Query 007661
Match_columns 594
No_of_seqs 440 out of 3818
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 07:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.4E-81 8.3E-86 708.1 33.0 529 14-594 25-570 (806)
2 1ypw_A Transitional endoplasmi 100.0 6E-59 2.1E-63 534.8 29.4 528 13-592 24-568 (806)
3 4b4t_J 26S protease regulatory 100.0 1.1E-51 3.9E-56 430.9 30.6 287 174-489 102-392 (405)
4 4b4t_I 26S protease regulatory 100.0 1.3E-50 4.3E-55 423.6 27.2 287 174-489 136-426 (437)
5 3hu3_A Transitional endoplasmi 100.0 3.7E-48 1.3E-52 420.6 38.7 444 13-506 24-483 (489)
6 4b4t_L 26S protease subunit RP 100.0 3E-49 1E-53 419.3 29.3 286 176-490 137-426 (437)
7 4b4t_M 26S protease regulatory 100.0 4.1E-49 1.4E-53 417.9 30.2 285 177-490 138-426 (434)
8 4b4t_H 26S protease regulatory 100.0 8.3E-49 2.8E-53 413.8 27.4 286 175-489 164-453 (467)
9 4b4t_K 26S protease regulatory 100.0 6.7E-48 2.3E-52 408.4 31.2 283 176-487 128-415 (428)
10 3cf2_A TER ATPase, transitiona 100.0 9.2E-45 3.1E-49 410.0 12.2 265 210-490 470-747 (806)
11 2x8a_A Nuclear valosin-contain 100.0 2.9E-38 9.9E-43 319.2 22.9 263 212-491 5-269 (274)
12 3cf0_A Transitional endoplasmi 100.0 3.5E-37 1.2E-41 316.1 23.6 264 211-490 9-285 (301)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 8.9E-37 3.1E-41 315.7 25.2 260 212-490 7-303 (322)
14 3eie_A Vacuolar protein sortin 100.0 4.5E-35 1.5E-39 303.2 23.6 260 211-490 12-302 (322)
15 2qp9_X Vacuolar protein sortin 100.0 1.2E-34 4.2E-39 303.7 23.3 259 212-490 46-335 (355)
16 2ce7_A Cell division protein F 100.0 7.6E-34 2.6E-38 305.7 26.9 247 212-488 11-258 (476)
17 2zan_A Vacuolar protein sortin 100.0 2.8E-34 9.7E-39 309.6 21.0 261 211-490 128-425 (444)
18 3h4m_A Proteasome-activating n 100.0 7.6E-33 2.6E-37 281.2 27.7 249 212-489 12-261 (285)
19 1lv7_A FTSH; alpha/beta domain 100.0 1.1E-32 3.9E-37 275.8 26.8 246 212-487 7-253 (257)
20 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.6E-32 1.2E-36 272.5 20.9 250 212-489 1-252 (262)
21 2dhr_A FTSH; AAA+ protein, hex 100.0 4.1E-32 1.4E-36 293.9 22.1 247 212-488 26-273 (499)
22 1ixz_A ATP-dependent metallopr 100.0 5.8E-31 2E-35 263.0 25.6 242 212-483 11-253 (254)
23 3d8b_A Fidgetin-like protein 1 100.0 2.3E-30 7.8E-35 271.6 25.3 258 212-490 79-338 (357)
24 1ypw_A Transitional endoplasmi 100.0 1E-33 3.5E-38 325.3 -0.5 265 210-490 470-747 (806)
25 3b9p_A CG5977-PA, isoform A; A 100.0 2.3E-30 7.9E-35 264.5 22.0 258 212-490 16-276 (297)
26 1iy2_A ATP-dependent metallopr 100.0 1.5E-29 5.1E-34 256.3 25.9 242 212-483 35-277 (278)
27 2r62_A Cell division protease 100.0 7.8E-32 2.7E-36 271.3 3.7 249 212-490 6-257 (268)
28 3vfd_A Spastin; ATPase, microt 100.0 3E-29 1E-33 266.3 23.4 258 212-490 110-369 (389)
29 1qcs_A N-ethylmaleimide sensit 100.0 4.8E-28 1.6E-32 232.6 20.4 190 6-202 1-204 (211)
30 1cr5_A SEC18P (residues 22 - 2 99.9 9.8E-27 3.3E-31 219.5 20.4 171 12-190 5-188 (189)
31 1r6b_X CLPA protein; AAA+, N-t 99.9 1.7E-26 5.7E-31 265.7 24.3 309 215-570 184-524 (758)
32 3t15_A Ribulose bisphosphate c 99.9 1.3E-25 4.3E-30 229.0 15.5 180 250-444 32-222 (293)
33 3pxi_A Negative regulator of g 99.9 1.3E-24 4.4E-29 249.8 20.6 304 215-571 178-561 (758)
34 1qvr_A CLPB protein; coiled co 99.9 4.6E-24 1.6E-28 247.8 18.5 205 214-453 167-392 (854)
35 2c9o_A RUVB-like 1; hexameric 99.9 3E-23 1E-27 224.5 1.0 204 212-448 32-262 (456)
36 3syl_A Protein CBBX; photosynt 99.8 1.5E-20 5.2E-25 192.6 16.4 215 221-459 33-268 (309)
37 4akg_A Glutathione S-transfera 99.8 2.9E-19 1E-23 223.2 21.7 320 252-591 1265-1663(2695)
38 1g41_A Heat shock protein HSLU 99.8 2.7E-20 9.2E-25 197.6 5.0 169 220-409 16-189 (444)
39 3uk6_A RUVB-like 2; hexameric 99.8 4.1E-18 1.4E-22 178.8 20.7 230 212-486 39-330 (368)
40 1d2n_A N-ethylmaleimide-sensit 99.8 7.1E-18 2.4E-22 169.7 19.7 224 221-487 35-265 (272)
41 4b4t_J 26S protease regulatory 99.8 1.7E-19 5.9E-24 188.3 6.5 96 494-593 142-240 (405)
42 1ofh_A ATP-dependent HSL prote 99.8 3.7E-18 1.3E-22 174.5 15.8 253 220-487 16-300 (310)
43 3qwz_A Transitional endoplasmi 99.8 5.1E-18 1.7E-22 161.5 15.0 179 13-223 27-211 (211)
44 3m6a_A ATP-dependent protease 99.7 2.5E-18 8.4E-23 189.5 11.9 229 221-486 83-341 (543)
45 3pfi_A Holliday junction ATP-d 99.7 1.2E-16 4.2E-21 165.7 21.8 213 214-486 26-254 (338)
46 4b4t_I 26S protease regulatory 99.7 1.7E-18 5.7E-23 181.3 6.6 96 494-593 176-274 (437)
47 3hws_A ATP-dependent CLP prote 99.7 3.6E-17 1.2E-21 171.7 16.4 248 221-482 17-345 (363)
48 4b4t_H 26S protease regulatory 99.7 2.4E-18 8.3E-23 181.7 6.4 96 494-593 203-301 (467)
49 4b4t_K 26S protease regulatory 99.7 4.8E-18 1.6E-22 179.9 7.5 96 494-593 166-264 (428)
50 4b4t_M 26S protease regulatory 99.7 3.6E-18 1.2E-22 181.0 5.6 96 494-593 175-273 (434)
51 4b4t_L 26S protease subunit RP 99.7 5.6E-18 1.9E-22 179.6 7.0 96 494-593 175-273 (437)
52 3tiw_A Transitional endoplasmi 99.7 2.2E-16 7.7E-21 147.5 16.7 156 13-188 24-185 (187)
53 1jbk_A CLPB protein; beta barr 99.7 1.3E-16 4.4E-21 150.3 13.4 160 214-408 19-194 (195)
54 2v1u_A Cell division control p 99.7 1.7E-15 5.7E-20 159.4 22.4 231 212-486 14-276 (387)
55 1l8q_A Chromosomal replication 99.7 1.3E-15 4.4E-20 157.1 19.7 226 212-486 6-240 (324)
56 1hqc_A RUVB; extended AAA-ATPa 99.7 5.1E-16 1.7E-20 159.9 15.1 214 214-486 9-238 (324)
57 2z4s_A Chromosomal replication 99.7 1.6E-15 5.6E-20 162.8 19.3 196 254-488 130-334 (440)
58 3te6_A Regulatory protein SIR3 99.6 1.3E-15 4.6E-20 155.2 13.2 164 221-416 22-215 (318)
59 2chg_A Replication factor C sm 99.6 3.9E-14 1.3E-18 136.5 23.0 208 213-484 13-224 (226)
60 3bos_A Putative DNA replicatio 99.6 1.2E-14 4.2E-19 142.3 19.1 209 212-484 23-241 (242)
61 3pvs_A Replication-associated 99.6 9.2E-15 3.1E-19 156.9 18.1 214 214-487 23-245 (447)
62 1njg_A DNA polymerase III subu 99.6 3.9E-14 1.3E-18 138.2 20.9 212 214-483 20-248 (250)
63 4fcw_A Chaperone protein CLPB; 99.6 3.8E-15 1.3E-19 152.3 14.0 205 221-458 19-283 (311)
64 2qby_A CDC6 homolog 1, cell di 99.6 3.5E-14 1.2E-18 149.0 21.5 230 212-487 15-273 (386)
65 2qby_B CDC6 homolog 3, cell di 99.6 1.8E-14 6.1E-19 151.7 19.1 220 214-487 17-271 (384)
66 1g8p_A Magnesium-chelatase 38 99.6 5.8E-15 2E-19 153.5 14.7 228 212-487 19-323 (350)
67 1cz4_A VCP-like ATPase; double 99.6 2.1E-14 7.1E-19 134.6 16.7 162 12-190 6-175 (185)
68 3pxg_A Negative regulator of g 99.6 4.3E-15 1.5E-19 160.9 13.8 189 215-454 178-386 (468)
69 1um8_A ATP-dependent CLP prote 99.6 1.1E-14 3.7E-19 153.4 16.6 248 221-484 23-363 (376)
70 2r44_A Uncharacterized protein 99.6 3.5E-14 1.2E-18 146.8 19.6 211 221-487 29-298 (331)
71 3cmw_A Protein RECA, recombina 99.6 9.7E-18 3.3E-22 201.5 -8.5 95 495-593 1015-1159(1706)
72 3u61_B DNA polymerase accessor 99.6 1.8E-14 6.3E-19 148.4 16.9 193 214-450 23-220 (324)
73 1sxj_A Activator 1 95 kDa subu 99.6 1.3E-14 4.4E-19 159.2 15.2 209 213-448 35-254 (516)
74 2p65_A Hypothetical protein PF 99.6 1.7E-14 5.7E-19 135.3 12.6 153 214-400 19-187 (187)
75 1in4_A RUVB, holliday junction 99.6 1.8E-13 6.2E-18 141.7 21.6 215 215-486 23-250 (334)
76 3vkg_A Dynein heavy chain, cyt 99.6 4.1E-14 1.4E-18 177.9 19.5 319 253-590 1303-1699(3245)
77 3pxi_A Negative regulator of g 99.6 3.3E-14 1.1E-18 163.2 16.9 202 220-457 492-728 (758)
78 1fnn_A CDC6P, cell division co 99.6 2.8E-13 9.6E-18 142.6 22.4 228 212-487 12-275 (389)
79 2bjv_A PSP operon transcriptio 99.5 5.3E-14 1.8E-18 140.7 12.3 201 214-454 3-241 (265)
80 1r6b_X CLPA protein; AAA+, N-t 99.5 1.8E-13 6.2E-18 157.2 17.7 202 221-457 460-719 (758)
81 1sxj_D Activator 1 41 kDa subu 99.5 5.8E-13 2E-17 138.4 19.5 216 213-484 33-261 (353)
82 1iqp_A RFCS; clamp loader, ext 99.5 1.1E-12 3.6E-17 134.7 19.5 192 213-450 21-216 (327)
83 2chq_A Replication factor C sm 99.5 1E-12 3.5E-17 134.4 18.3 192 213-450 13-208 (319)
84 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 2.3E-13 8E-18 147.3 13.8 200 220-456 23-269 (500)
85 4akg_A Glutathione S-transfera 99.5 1.1E-12 3.7E-17 164.5 21.0 170 254-452 645-839 (2695)
86 1sxj_B Activator 1 37 kDa subu 99.5 1.9E-12 6.5E-17 132.6 18.9 193 213-450 17-213 (323)
87 1jr3_A DNA polymerase III subu 99.5 2.3E-12 7.7E-17 135.0 19.7 192 214-452 13-227 (373)
88 1ojl_A Transcriptional regulat 99.4 4E-13 1.4E-17 137.2 12.0 194 221-453 4-235 (304)
89 1d2n_A N-ethylmaleimide-sensit 99.4 4.5E-13 1.5E-17 134.5 10.6 114 480-593 10-123 (272)
90 1qvr_A CLPB protein; coiled co 99.4 7.5E-13 2.6E-17 153.7 12.4 204 221-458 560-824 (854)
91 3cf0_A Transitional endoplasmi 99.4 2.2E-13 7.5E-18 139.0 6.8 96 494-593 9-107 (301)
92 3cmw_A Protein RECA, recombina 99.4 3.3E-13 1.1E-17 162.6 9.3 154 212-377 1015-1218(1706)
93 2x8a_A Nuclear valosin-contain 99.4 2.7E-13 9.1E-18 136.3 6.2 95 494-592 4-101 (274)
94 1sxj_E Activator 1 40 kDa subu 99.4 1E-11 3.6E-16 129.2 18.2 199 213-452 10-243 (354)
95 1xwi_A SKD1 protein; VPS4B, AA 99.4 2.3E-13 7.7E-18 140.2 5.4 95 494-593 6-104 (322)
96 3f9v_A Minichromosome maintena 99.3 4.8E-13 1.6E-17 148.6 6.0 222 220-487 296-588 (595)
97 1w5s_A Origin recognition comp 99.3 4.3E-11 1.5E-15 126.8 20.0 235 212-487 17-294 (412)
98 3co5_A Putative two-component 99.3 1E-12 3.5E-17 118.7 5.2 111 221-377 6-116 (143)
99 3n70_A Transport activator; si 99.3 5.5E-12 1.9E-16 114.1 9.8 112 221-377 3-116 (145)
100 3eie_A Vacuolar protein sortin 99.3 7.7E-13 2.6E-17 136.2 3.1 95 494-593 12-109 (322)
101 2krk_A 26S protease regulatory 99.3 6.7E-12 2.3E-16 102.5 7.7 78 395-489 7-84 (86)
102 1a5t_A Delta prime, HOLB; zinc 99.3 1.6E-10 5.4E-15 119.5 19.7 161 253-447 23-206 (334)
103 1sxj_C Activator 1 40 kDa subu 99.2 2.5E-10 8.5E-15 118.3 19.8 187 213-446 21-212 (340)
104 3kw6_A 26S protease regulatory 99.2 1.8E-11 6E-16 98.4 8.5 75 397-488 1-75 (78)
105 2qp9_X Vacuolar protein sortin 99.2 1.9E-12 6.6E-17 135.0 3.4 95 494-593 45-142 (355)
106 3k1j_A LON protease, ATP-depen 99.2 7.7E-11 2.6E-15 131.5 15.3 134 323-484 202-373 (604)
107 2gno_A DNA polymerase III, gam 99.2 2E-10 6.8E-15 117.0 14.9 129 255-412 19-152 (305)
108 3h4m_A Proteasome-activating n 99.2 2E-11 6.9E-16 123.0 7.3 95 495-593 12-109 (285)
109 2zan_A Vacuolar protein sortin 99.2 8.1E-12 2.8E-16 134.2 4.7 96 493-593 127-226 (444)
110 1wlf_A PEX1, peroxisome biogen 99.2 1.7E-10 5.7E-15 107.5 12.5 159 11-189 11-177 (179)
111 3hu3_A Transitional endoplasmi 99.1 2.7E-11 9.1E-16 131.3 5.8 91 499-593 203-296 (489)
112 3vlf_B 26S protease regulatory 99.1 9.7E-11 3.3E-15 96.2 7.8 74 400-490 2-75 (88)
113 1lv7_A FTSH; alpha/beta domain 99.1 3.6E-11 1.2E-15 119.4 6.1 91 497-592 9-102 (257)
114 2qz4_A Paraplegin; AAA+, SPG7, 99.1 2.9E-11 1E-15 120.0 5.2 90 498-592 4-96 (262)
115 3vkg_A Dynein heavy chain, cyt 99.1 1.2E-09 4E-14 138.1 19.5 167 255-451 605-798 (3245)
116 2ce7_A Cell division protein F 99.1 7.8E-11 2.7E-15 126.7 7.4 93 496-593 12-107 (476)
117 3aji_B S6C, proteasome (prosom 99.1 1.9E-10 6.6E-15 93.4 7.1 75 400-491 2-76 (83)
118 3t15_A Ribulose bisphosphate c 99.1 5.4E-11 1.8E-15 120.7 4.3 58 529-590 31-91 (293)
119 3b9p_A CG5977-PA, isoform A; A 99.1 6.4E-11 2.2E-15 120.1 4.7 94 495-593 16-112 (297)
120 2r62_A Cell division protease 99.1 4E-11 1.4E-15 119.7 2.6 92 496-592 7-101 (268)
121 3d8b_A Fidgetin-like protein 1 99.0 7E-11 2.4E-15 123.3 4.1 93 496-593 80-175 (357)
122 3cmu_A Protein RECA, recombina 99.0 3.5E-09 1.2E-13 129.2 17.8 119 250-376 1077-1217(2050)
123 3ec2_A DNA replication protein 99.0 6.9E-10 2.4E-14 103.8 8.3 108 248-377 32-143 (180)
124 2c9o_A RUVB-like 1; hexameric 99.0 7.5E-10 2.6E-14 119.4 8.3 71 514-590 44-119 (456)
125 3vfd_A Spastin; ATPase, microt 99.0 2.4E-10 8.2E-15 120.7 4.3 58 532-593 146-206 (389)
126 1ixz_A ATP-dependent metallopr 98.9 1.1E-09 3.8E-14 108.4 7.1 93 495-592 11-106 (254)
127 2dhr_A FTSH; AAA+ protein, hex 98.9 4.7E-10 1.6E-14 121.3 4.2 91 497-592 28-121 (499)
128 1g41_A Heat shock protein HSLU 98.9 1.5E-09 5.1E-14 115.1 8.0 57 532-592 48-109 (444)
129 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.5E-09 5.1E-14 109.7 5.0 122 250-384 119-242 (331)
130 1ny5_A Transcriptional regulat 98.8 1.1E-08 3.7E-13 107.8 11.3 172 254-453 160-370 (387)
131 2dzn_B 26S protease regulatory 98.8 1.6E-09 5.6E-14 87.6 3.3 69 402-487 1-69 (82)
132 1iy2_A ATP-dependent metallopr 98.8 6.4E-09 2.2E-13 104.4 6.9 92 496-592 36-130 (278)
133 2kjq_A DNAA-related protein; s 98.7 1.5E-08 5.2E-13 91.8 7.9 60 253-335 35-96 (149)
134 2w58_A DNAI, primosome compone 98.7 2.2E-08 7.4E-13 95.3 9.3 72 254-335 54-128 (202)
135 2r2a_A Uncharacterized protein 98.7 5.1E-08 1.8E-12 92.7 8.9 126 256-401 7-155 (199)
136 3dzd_A Transcriptional regulat 98.6 2E-07 6.9E-12 97.3 13.4 171 255-453 153-361 (368)
137 2qgz_A Helicase loader, putati 98.6 9.3E-08 3.2E-12 97.4 10.4 73 253-335 151-227 (308)
138 2fna_A Conserved hypothetical 98.6 8.7E-07 3E-11 91.3 18.0 185 221-448 15-252 (357)
139 2qen_A Walker-type ATPase; unk 98.6 1.4E-06 4.9E-11 89.4 19.2 191 221-447 14-247 (350)
140 3hws_A ATP-dependent CLP prote 98.6 4.2E-08 1.4E-12 102.4 7.4 55 533-590 50-108 (363)
141 3syl_A Protein CBBX; photosynt 98.5 8.3E-08 2.8E-12 97.5 7.4 85 502-591 33-130 (309)
142 3f8t_A Predicted ATPase involv 98.5 2.9E-07 1E-11 97.2 10.6 189 256-488 241-485 (506)
143 3cmu_A Protein RECA, recombina 98.5 3.5E-07 1.2E-11 111.8 11.4 124 243-374 1413-1561(2050)
144 1um8_A ATP-dependent CLP prote 98.4 3.3E-07 1.1E-11 95.9 8.6 57 531-590 69-129 (376)
145 1tue_A Replication protein E1; 98.4 2.1E-07 7.3E-12 87.8 5.6 31 250-280 54-84 (212)
146 1ofh_A ATP-dependent HSL prote 98.3 3.8E-07 1.3E-11 92.3 6.4 55 533-590 49-107 (310)
147 3uk6_A RUVB-like 2; hexameric 98.3 6.3E-07 2.2E-11 93.3 8.2 57 529-590 65-126 (368)
148 1svm_A Large T antigen; AAA+ f 98.3 1.2E-07 4.1E-12 98.9 1.2 120 249-398 164-284 (377)
149 3n70_A Transport activator; si 98.3 1.3E-06 4.5E-11 78.4 7.5 50 534-591 24-76 (145)
150 3pxg_A Negative regulator of g 98.3 7.4E-07 2.5E-11 96.1 6.9 58 532-593 199-266 (468)
151 3m6a_A ATP-dependent protease 98.2 1.4E-06 4.8E-11 95.6 8.2 56 533-592 107-174 (543)
152 3co5_A Putative two-component 98.1 8.6E-07 2.9E-11 79.4 3.1 36 534-570 27-62 (143)
153 1jbk_A CLPB protein; beta barr 98.1 1.8E-06 6.2E-11 80.1 5.1 56 532-591 41-111 (195)
154 2p65_A Hypothetical protein PF 98.1 1.5E-06 5.2E-11 80.4 4.3 57 532-592 41-112 (187)
155 3pfi_A Holliday junction ATP-d 98.1 4.2E-06 1.4E-10 86.0 7.9 39 532-570 53-91 (338)
156 3pvs_A Replication-associated 98.0 3.2E-06 1.1E-10 90.4 5.9 49 535-591 51-99 (447)
157 4fcw_A Chaperone protein CLPB; 98.0 8.7E-06 3E-10 82.4 7.1 41 530-570 43-86 (311)
158 1u0j_A DNA replication protein 98.0 3.9E-05 1.3E-09 75.6 11.3 26 253-278 103-128 (267)
159 3te6_A Regulatory protein SIR3 97.9 3.2E-06 1.1E-10 86.0 3.2 39 532-570 43-91 (318)
160 1hqc_A RUVB; extended AAA-ATPa 97.9 8.5E-06 2.9E-10 83.0 6.3 39 532-570 36-74 (324)
161 1sxj_A Activator 1 95 kDa subu 97.9 5.1E-06 1.8E-10 90.7 5.0 39 533-571 76-114 (516)
162 1l8q_A Chromosomal replication 97.9 6.1E-06 2.1E-10 84.4 5.2 40 532-571 35-77 (324)
163 1u0j_A DNA replication protein 97.9 3.1E-06 1E-10 83.5 2.7 34 525-558 95-128 (267)
164 2w58_A DNAI, primosome compone 97.9 8.9E-06 3E-10 76.9 5.9 38 534-571 54-94 (202)
165 1in4_A RUVB, holliday junction 97.9 1.1E-05 3.9E-10 82.8 7.0 56 515-571 33-88 (334)
166 1ye8_A Protein THEP1, hypothet 97.9 9.3E-05 3.2E-09 68.7 12.4 24 256-279 2-25 (178)
167 3ec2_A DNA replication protein 97.9 1E-05 3.5E-10 75.1 4.9 56 512-570 19-78 (180)
168 2bjv_A PSP operon transcriptio 97.8 1.9E-05 6.4E-10 78.2 6.9 37 534-570 29-68 (265)
169 1jr3_D DNA polymerase III, del 97.8 0.00019 6.3E-09 73.9 13.7 163 254-451 18-190 (343)
170 2r44_A Uncharacterized protein 97.8 8.8E-06 3E-10 83.4 3.6 33 535-567 47-79 (331)
171 3hr8_A Protein RECA; alpha and 97.8 9.4E-05 3.2E-09 76.3 10.8 116 250-373 57-194 (356)
172 3bos_A Putative DNA replicatio 97.7 3.2E-05 1.1E-09 74.7 6.4 38 533-570 51-91 (242)
173 3u61_B DNA polymerase accessor 97.7 3E-05 1E-09 79.1 6.3 38 532-569 46-83 (324)
174 1n0w_A DNA repair protein RAD5 97.7 6E-05 2E-09 73.1 7.6 41 250-290 20-68 (243)
175 2w0m_A SSO2452; RECA, SSPF, un 97.7 8.4E-05 2.9E-09 71.4 8.4 38 250-287 19-58 (235)
176 1xp8_A RECA protein, recombina 97.7 0.00012 4.1E-09 76.0 10.0 118 250-374 70-208 (366)
177 1ojl_A Transcriptional regulat 97.7 3.6E-05 1.2E-09 78.0 5.9 38 533-570 24-64 (304)
178 2qgz_A Helicase loader, putati 97.7 3.3E-05 1.1E-09 78.4 5.6 39 533-571 151-193 (308)
179 2cvh_A DNA repair and recombin 97.7 7E-05 2.4E-09 71.4 7.3 40 250-290 16-55 (220)
180 2qby_B CDC6 homolog 3, cell di 97.6 4.4E-05 1.5E-09 79.5 6.2 38 532-569 43-91 (384)
181 2z4s_A Chromosomal replication 97.6 4.2E-05 1.5E-09 81.6 5.8 37 534-570 130-171 (440)
182 4a74_A DNA repair and recombin 97.6 7E-05 2.4E-09 71.9 6.7 29 250-278 21-49 (231)
183 2ehv_A Hypothetical protein PH 97.6 0.00016 5.6E-09 70.3 9.5 26 250-275 26-51 (251)
184 3trf_A Shikimate kinase, SK; a 97.6 3.8E-05 1.3E-09 71.4 4.2 33 534-566 5-37 (185)
185 3vaa_A Shikimate kinase, SK; s 97.6 4.5E-05 1.5E-09 72.0 4.3 36 531-566 22-57 (199)
186 3lda_A DNA repair protein RAD5 97.6 0.00013 4.4E-09 76.6 8.1 123 250-376 174-327 (400)
187 1tue_A Replication protein E1; 97.5 6.3E-05 2.2E-09 70.9 5.0 31 534-564 58-88 (212)
188 2v1u_A Cell division control p 97.5 3.3E-05 1.1E-09 80.3 3.5 39 532-570 42-89 (387)
189 2zr9_A Protein RECA, recombina 97.5 0.00011 3.8E-09 75.8 7.1 40 250-289 57-98 (349)
190 1qhx_A CPT, protein (chloramph 97.5 6.8E-05 2.3E-09 69.1 4.9 33 535-567 4-36 (178)
191 2chg_A Replication factor C sm 97.5 0.0001 3.5E-09 69.8 6.2 35 536-570 40-79 (226)
192 2kjq_A DNAA-related protein; s 97.5 6.2E-05 2.1E-09 67.8 4.4 37 533-569 35-74 (149)
193 2z43_A DNA repair and recombin 97.5 0.00014 4.9E-09 74.2 7.3 41 250-290 103-151 (324)
194 2gno_A DNA polymerase III, gam 97.5 0.00019 6.6E-09 72.6 8.2 54 534-593 18-77 (305)
195 1v5w_A DMC1, meiotic recombina 97.5 0.00019 6.6E-09 73.9 8.1 41 250-290 118-166 (343)
196 3io5_A Recombination and repai 97.5 0.00022 7.6E-09 71.7 8.1 118 250-373 25-168 (333)
197 2rhm_A Putative kinase; P-loop 97.5 9.3E-05 3.2E-09 69.0 5.0 35 532-566 3-37 (193)
198 1u94_A RECA protein, recombina 97.4 0.00019 6.4E-09 74.2 7.6 118 250-374 59-197 (356)
199 1fnn_A CDC6P, cell division co 97.4 0.00018 6.1E-09 74.9 7.5 35 536-570 46-84 (389)
200 4gp7_A Metallophosphoesterase; 97.4 0.00022 7.5E-09 65.6 6.4 23 251-273 6-28 (171)
201 3kb2_A SPBC2 prophage-derived 97.4 0.0001 3.4E-09 67.4 4.0 31 536-566 3-33 (173)
202 3nbx_X ATPase RAVA; AAA+ ATPas 97.4 8.2E-05 2.8E-09 80.4 3.9 32 535-566 42-75 (500)
203 1y63_A LMAJ004144AAA protein; 97.4 7.4E-05 2.5E-09 69.6 3.1 33 534-566 10-43 (184)
204 1via_A Shikimate kinase; struc 97.3 9.5E-05 3.3E-09 68.1 3.4 30 536-565 6-35 (175)
205 1njg_A DNA polymerase III subu 97.3 0.00018 6E-09 69.0 5.4 27 534-560 45-71 (250)
206 2iyv_A Shikimate kinase, SK; t 97.3 8.8E-05 3E-09 68.9 3.0 30 537-566 5-34 (184)
207 3umf_A Adenylate kinase; rossm 97.3 0.00012 4E-09 70.3 3.8 35 530-564 25-59 (217)
208 1a5t_A Delta prime, HOLB; zinc 97.3 0.00028 9.7E-09 72.3 7.0 29 532-560 22-50 (334)
209 3iij_A Coilin-interacting nucl 97.3 0.00012 4.2E-09 67.6 3.8 34 533-566 10-43 (180)
210 1zp6_A Hypothetical protein AT 97.3 0.00019 6.4E-09 66.9 5.1 40 531-570 6-45 (191)
211 2jv2_A Putative uncharacterize 97.3 0.00086 2.9E-08 53.4 8.1 53 128-189 29-81 (83)
212 2cdn_A Adenylate kinase; phosp 97.3 0.00017 5.7E-09 68.0 4.7 34 532-565 18-51 (201)
213 1g8p_A Magnesium-chelatase 38 97.3 6.7E-05 2.3E-09 77.1 2.1 26 534-559 45-70 (350)
214 1pzn_A RAD51, DNA repair and r 97.3 0.0004 1.4E-08 71.7 7.9 30 249-278 126-155 (349)
215 2ze6_A Isopentenyl transferase 97.3 0.00012 4E-09 72.1 3.6 32 536-567 3-34 (253)
216 3sr0_A Adenylate kinase; phosp 97.3 0.00012 4E-09 69.7 3.5 30 536-565 2-31 (206)
217 3be4_A Adenylate kinase; malar 97.3 0.00013 4.3E-09 70.0 3.7 33 533-565 4-36 (217)
218 1aky_A Adenylate kinase; ATP:A 97.3 0.00013 4.6E-09 69.8 3.8 33 533-565 3-35 (220)
219 2qby_A CDC6 homolog 1, cell di 97.3 0.0001 3.5E-09 76.4 3.2 38 532-569 43-86 (386)
220 2vhj_A Ntpase P4, P4; non- hyd 97.3 0.0002 6.9E-09 72.3 5.2 41 531-571 120-162 (331)
221 1z6t_A APAF-1, apoptotic prote 97.3 0.0044 1.5E-07 68.4 16.4 167 221-439 126-322 (591)
222 2chq_A Replication factor C sm 97.2 0.00011 3.7E-09 74.3 3.0 35 536-570 40-79 (319)
223 1sxj_D Activator 1 41 kDa subu 97.2 0.00027 9.3E-09 72.5 5.8 35 536-570 60-100 (353)
224 1zuh_A Shikimate kinase; alpha 97.2 0.00019 6.5E-09 65.5 4.1 31 536-566 9-39 (168)
225 1kag_A SKI, shikimate kinase I 97.2 0.00017 5.8E-09 66.1 3.8 30 535-564 5-34 (173)
226 1tev_A UMP-CMP kinase; ploop, 97.2 0.00018 6.1E-09 67.0 4.0 32 534-565 3-34 (196)
227 3lw7_A Adenylate kinase relate 97.2 0.00017 5.7E-09 65.8 3.6 29 536-565 3-31 (179)
228 2orw_A Thymidine kinase; TMTK, 97.2 0.00017 6E-09 67.2 3.7 24 255-278 4-27 (184)
229 2p5t_B PEZT; postsegregational 97.2 0.00024 8.3E-09 69.7 4.9 40 531-570 29-68 (253)
230 1iqp_A RFCS; clamp loader, ext 97.2 0.00021 7E-09 72.5 4.5 35 536-570 48-87 (327)
231 3cm0_A Adenylate kinase; ATP-b 97.2 0.00018 6E-09 66.8 3.6 32 534-565 4-35 (186)
232 1zd8_A GTP:AMP phosphotransfer 97.2 0.0002 6.7E-09 69.0 4.0 33 533-565 6-38 (227)
233 2c95_A Adenylate kinase 1; tra 97.2 0.0002 6.9E-09 66.9 3.9 33 533-565 8-40 (196)
234 3sfz_A APAF-1, apoptotic pepti 97.2 0.0044 1.5E-07 74.3 16.5 171 220-440 125-323 (1249)
235 1nlf_A Regulatory protein REPA 97.2 0.00067 2.3E-08 67.5 7.8 29 250-278 26-54 (279)
236 1sxj_B Activator 1 37 kDa subu 97.2 0.00023 8E-09 71.9 4.4 34 537-570 45-83 (323)
237 3crm_A TRNA delta(2)-isopenten 97.1 0.00027 9.4E-09 71.6 4.7 37 535-571 6-42 (323)
238 3tlx_A Adenylate kinase 2; str 97.1 0.00038 1.3E-08 67.9 5.6 35 531-565 26-60 (243)
239 3dl0_A Adenylate kinase; phosp 97.1 0.00026 8.9E-09 67.5 4.3 30 536-565 2-31 (216)
240 1ak2_A Adenylate kinase isoenz 97.1 0.00023 7.7E-09 69.0 3.9 32 534-565 16-47 (233)
241 2i1q_A DNA repair and recombin 97.1 0.00049 1.7E-08 70.1 6.6 28 250-277 94-121 (322)
242 2vli_A Antibiotic resistance p 97.1 0.00021 7.1E-09 66.0 3.5 30 534-563 5-34 (183)
243 1e6c_A Shikimate kinase; phosp 97.1 0.0002 7E-09 65.4 3.4 31 536-566 4-34 (173)
244 1ly1_A Polynucleotide kinase; 97.1 0.00019 6.4E-09 66.0 3.1 30 535-564 3-33 (181)
245 3vaa_A Shikimate kinase, SK; s 97.1 0.00046 1.6E-08 65.0 5.9 41 251-294 22-62 (199)
246 3trf_A Shikimate kinase, SK; a 97.1 0.00048 1.6E-08 63.8 5.8 41 254-297 5-45 (185)
247 1qf9_A UMP/CMP kinase, protein 97.1 0.00032 1.1E-08 65.2 4.5 32 534-565 6-37 (194)
248 1gvn_B Zeta; postsegregational 97.1 0.00058 2E-08 68.4 6.7 41 251-292 30-70 (287)
249 1ukz_A Uridylate kinase; trans 97.1 0.00036 1.2E-08 65.8 4.9 33 534-566 15-47 (203)
250 1gvn_B Zeta; postsegregational 97.1 0.0008 2.7E-08 67.4 7.6 36 532-567 31-66 (287)
251 2yuj_A Ubiquitin fusion degrad 97.1 0.01 3.5E-07 54.6 14.1 145 11-165 16-173 (190)
252 3fb4_A Adenylate kinase; psych 97.1 0.00029 9.8E-09 67.1 4.0 30 536-565 2-31 (216)
253 1qhx_A CPT, protein (chloramph 97.1 0.0004 1.4E-08 63.8 4.9 35 254-289 3-37 (178)
254 2pez_A Bifunctional 3'-phospho 97.1 0.0004 1.4E-08 64.1 4.8 36 533-568 4-42 (179)
255 2pt5_A Shikimate kinase, SK; a 97.1 0.0003 1E-08 64.0 3.9 31 536-566 2-32 (168)
256 2dr3_A UPF0273 protein PH0284; 97.1 0.0029 9.9E-08 61.1 11.2 39 250-288 19-59 (247)
257 1kht_A Adenylate kinase; phosp 97.1 0.0002 6.9E-09 66.5 2.7 31 535-565 4-39 (192)
258 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00016 5.5E-09 74.0 2.1 31 534-564 24-54 (359)
259 1sxj_C Activator 1 40 kDa subu 97.1 0.00048 1.7E-08 70.6 5.7 33 537-569 49-86 (340)
260 2bwj_A Adenylate kinase 5; pho 97.1 0.00026 8.9E-09 66.3 3.4 32 534-565 12-43 (199)
261 3a8t_A Adenylate isopentenyltr 97.1 0.00033 1.1E-08 71.3 4.3 37 535-571 41-77 (339)
262 1jr3_A DNA polymerase III subu 97.1 0.0011 3.8E-08 68.4 8.5 27 534-560 38-64 (373)
263 1ex7_A Guanylate kinase; subst 97.1 0.0012 4E-08 61.6 7.7 25 255-279 2-26 (186)
264 3t61_A Gluconokinase; PSI-biol 97.1 0.00033 1.1E-08 66.1 3.9 32 534-565 18-49 (202)
265 3foz_A TRNA delta(2)-isopenten 97.0 0.00039 1.3E-08 69.8 4.5 38 534-571 10-47 (316)
266 2iut_A DNA translocase FTSK; n 97.0 0.0027 9.2E-08 69.0 11.2 75 323-409 344-420 (574)
267 1knq_A Gluconate kinase; ALFA/ 97.0 0.00045 1.6E-08 63.4 4.5 32 533-564 7-38 (175)
268 1e4v_A Adenylate kinase; trans 97.0 0.00038 1.3E-08 66.4 3.9 30 536-565 2-31 (214)
269 1zak_A Adenylate kinase; ATP:A 97.0 0.00023 7.7E-09 68.3 2.3 32 534-565 5-36 (222)
270 2ius_A DNA translocase FTSK; n 97.0 0.0021 7.2E-08 69.3 10.0 75 323-409 297-374 (512)
271 1svm_A Large T antigen; AAA+ f 97.0 0.00035 1.2E-08 72.6 3.5 41 529-569 164-204 (377)
272 2p5t_B PEZT; postsegregational 96.9 0.00084 2.9E-08 65.8 6.0 40 251-291 29-68 (253)
273 2a5y_B CED-4; apoptosis; HET: 96.9 0.012 4.3E-07 64.3 15.9 169 222-439 131-331 (549)
274 3e1s_A Exodeoxyribonuclease V, 96.9 0.00083 2.8E-08 74.0 6.3 24 255-278 205-228 (574)
275 2pbr_A DTMP kinase, thymidylat 96.9 0.00063 2.1E-08 63.3 4.5 32 537-568 3-37 (195)
276 2v54_A DTMP kinase, thymidylat 96.9 0.00063 2.2E-08 63.9 4.5 35 534-568 4-39 (204)
277 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00075 2.6E-08 66.5 5.2 35 534-568 4-41 (260)
278 1kag_A SKI, shikimate kinase I 96.9 0.0012 4.2E-08 60.2 6.2 37 254-293 4-40 (173)
279 2xb4_A Adenylate kinase; ATP-b 96.9 0.00046 1.6E-08 66.3 3.4 30 536-565 2-31 (223)
280 4eun_A Thermoresistant glucoki 96.9 0.00056 1.9E-08 64.5 3.8 36 532-569 27-62 (200)
281 3umf_A Adenylate kinase; rossm 96.9 0.0012 4E-08 63.3 6.0 41 251-294 26-66 (217)
282 2rhm_A Putative kinase; P-loop 96.9 0.00062 2.1E-08 63.3 4.0 29 251-279 2-30 (193)
283 1zc1_A Ubiquitin fusion degrad 96.9 0.0096 3.3E-07 55.6 11.8 132 25-165 42-178 (208)
284 1zp6_A Hypothetical protein AT 96.8 0.00074 2.5E-08 62.8 4.4 40 251-291 6-45 (191)
285 2zts_A Putative uncharacterize 96.8 0.0034 1.2E-07 60.7 9.3 38 250-287 26-66 (251)
286 3exa_A TRNA delta(2)-isopenten 96.8 0.00057 1.9E-08 68.7 3.6 36 536-571 5-40 (322)
287 2z0h_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 62.8 4.3 33 537-569 3-38 (197)
288 1cke_A CK, MSSA, protein (cyti 96.8 0.00056 1.9E-08 65.5 3.4 30 535-564 6-35 (227)
289 2bbw_A Adenylate kinase 4, AK4 96.8 0.00065 2.2E-08 66.3 3.9 32 533-564 26-57 (246)
290 3dm5_A SRP54, signal recogniti 96.8 0.0053 1.8E-07 64.9 11.1 210 253-487 99-341 (443)
291 3f9v_A Minichromosome maintena 96.8 0.00026 8.9E-09 78.4 1.0 30 535-564 328-357 (595)
292 2r6a_A DNAB helicase, replicat 96.8 0.0027 9.3E-08 67.8 8.8 39 250-288 199-240 (454)
293 3r20_A Cytidylate kinase; stru 96.8 0.00068 2.3E-08 65.6 3.7 31 534-564 9-39 (233)
294 2jaq_A Deoxyguanosine kinase; 96.8 0.00058 2E-08 64.0 3.2 31 536-566 2-32 (205)
295 1nks_A Adenylate kinase; therm 96.8 0.0004 1.4E-08 64.5 1.9 32 536-567 3-37 (194)
296 3uie_A Adenylyl-sulfate kinase 96.8 0.0012 4E-08 62.2 5.1 39 532-570 23-64 (200)
297 1uf9_A TT1252 protein; P-loop, 96.8 0.0011 3.8E-08 62.1 4.9 32 534-566 8-39 (203)
298 2plr_A DTMP kinase, probable t 96.7 0.0012 4E-08 62.3 5.0 35 534-568 4-40 (213)
299 2eyu_A Twitching motility prot 96.7 0.0014 4.8E-08 64.7 5.6 28 251-278 22-49 (261)
300 3jvv_A Twitching mobility prot 96.7 0.00078 2.7E-08 69.6 3.9 25 255-279 124-148 (356)
301 2b8t_A Thymidine kinase; deoxy 96.7 0.0032 1.1E-07 60.5 7.9 74 256-334 14-101 (223)
302 1y63_A LMAJ004144AAA protein; 96.7 0.0013 4.6E-08 60.9 5.1 38 252-291 8-45 (184)
303 3iij_A Coilin-interacting nucl 96.7 0.0013 4.3E-08 60.7 4.9 28 252-279 9-36 (180)
304 4g1u_C Hemin import ATP-bindin 96.7 0.0018 6.2E-08 64.0 6.3 27 252-278 35-61 (266)
305 1jjv_A Dephospho-COA kinase; P 96.7 0.00098 3.4E-08 62.9 4.1 29 536-565 4-32 (206)
306 2if2_A Dephospho-COA kinase; a 96.7 0.00085 2.9E-08 63.2 3.7 30 536-566 3-32 (204)
307 2qmh_A HPR kinase/phosphorylas 96.7 0.00074 2.5E-08 63.3 3.1 37 534-571 34-70 (205)
308 3rlf_A Maltose/maltodextrin im 96.7 0.0012 4.1E-08 68.6 5.0 27 252-278 27-53 (381)
309 2wwf_A Thymidilate kinase, put 96.7 0.00046 1.6E-08 65.3 1.8 33 533-565 9-41 (212)
310 1w5s_A Origin recognition comp 96.7 0.0018 6.2E-08 67.7 6.3 37 533-569 49-96 (412)
311 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0038 1.3E-07 61.3 8.3 39 254-292 4-44 (260)
312 1via_A Shikimate kinase; struc 96.7 0.0014 4.9E-08 60.0 4.7 34 256-292 6-39 (175)
313 1qf9_A UMP/CMP kinase, protein 96.6 0.0024 8.1E-08 59.1 6.3 38 253-293 5-42 (194)
314 1zuh_A Shikimate kinase; alpha 96.6 0.0014 4.7E-08 59.7 4.4 38 253-293 6-43 (168)
315 1g5t_A COB(I)alamin adenosyltr 96.6 0.017 5.9E-07 53.9 11.9 107 255-377 29-163 (196)
316 3nwj_A ATSK2; P loop, shikimat 96.6 0.00088 3E-08 65.6 3.2 32 534-565 48-79 (250)
317 1vma_A Cell division protein F 96.6 0.0064 2.2E-07 61.3 9.5 38 251-288 101-140 (306)
318 2fz4_A DNA repair protein RAD2 96.6 0.0043 1.5E-07 60.1 7.9 37 256-292 110-146 (237)
319 1ak2_A Adenylate kinase isoenz 96.6 0.0024 8.3E-08 61.6 6.1 38 253-293 15-52 (233)
320 2c95_A Adenylate kinase 1; tra 96.6 0.0028 9.5E-08 58.9 6.4 38 253-293 8-45 (196)
321 3upu_A ATP-dependent DNA helic 96.6 0.0029 1E-07 67.7 7.3 24 256-279 47-70 (459)
322 2r8r_A Sensor protein; KDPD, P 96.6 0.067 2.3E-06 51.1 15.9 34 255-288 7-42 (228)
323 1kht_A Adenylate kinase; phosp 96.6 0.0016 5.3E-08 60.3 4.5 25 255-279 4-28 (192)
324 2cdn_A Adenylate kinase; phosp 96.6 0.0029 1E-07 59.4 6.5 39 252-293 18-56 (201)
325 3ake_A Cytidylate kinase; CMP 96.6 0.0013 4.5E-08 61.8 3.9 31 536-566 4-34 (208)
326 1aky_A Adenylate kinase; ATP:A 96.6 0.0017 5.8E-08 62.0 4.7 38 253-293 3-40 (220)
327 2bwj_A Adenylate kinase 5; pho 96.5 0.0026 8.9E-08 59.3 5.9 37 254-293 12-48 (199)
328 3kl4_A SRP54, signal recogniti 96.5 0.0072 2.5E-07 63.8 9.8 36 253-288 96-133 (433)
329 2ewv_A Twitching motility prot 96.5 0.0016 5.4E-08 67.8 4.7 35 245-279 127-161 (372)
330 1zd8_A GTP:AMP phosphotransfer 96.5 0.0016 5.5E-08 62.5 4.3 39 252-293 5-43 (227)
331 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0022 7.6E-08 66.0 5.5 27 252-278 28-54 (359)
332 1sxj_E Activator 1 40 kDa subu 96.5 0.0011 3.9E-08 68.0 3.4 21 537-557 39-59 (354)
333 3eph_A TRNA isopentenyltransfe 96.5 0.0013 4.5E-08 68.4 3.8 38 534-571 2-39 (409)
334 1nn5_A Similar to deoxythymidy 96.5 0.00067 2.3E-08 64.3 1.5 34 533-566 8-44 (215)
335 3tui_C Methionine import ATP-b 96.5 0.0025 8.6E-08 65.7 5.8 27 252-278 52-78 (366)
336 3tlx_A Adenylate kinase 2; str 96.5 0.0029 1E-07 61.5 6.0 40 252-294 27-66 (243)
337 3sr0_A Adenylate kinase; phosp 96.5 0.0018 6.3E-08 61.4 4.3 35 256-293 2-36 (206)
338 4eun_A Thermoresistant glucoki 96.5 0.0026 8.8E-08 59.8 5.3 36 253-291 28-63 (200)
339 1tev_A UMP-CMP kinase; ploop, 96.5 0.002 6.7E-08 59.8 4.5 36 254-292 3-38 (196)
340 2q6t_A DNAB replication FORK h 96.5 0.0062 2.1E-07 64.8 8.9 39 250-288 196-237 (444)
341 3ney_A 55 kDa erythrocyte memb 96.5 0.0034 1.2E-07 59.0 6.0 31 249-279 14-44 (197)
342 2it1_A 362AA long hypothetical 96.5 0.0027 9.1E-08 65.6 5.7 27 252-278 27-53 (362)
343 2yyz_A Sugar ABC transporter, 96.4 0.0026 8.8E-08 65.6 5.5 27 252-278 27-53 (359)
344 2grj_A Dephospho-COA kinase; T 96.4 0.0015 5.2E-08 61.3 3.5 31 535-565 13-43 (192)
345 2iyv_A Shikimate kinase, SK; t 96.4 0.0017 5.7E-08 60.0 3.7 35 256-293 4-38 (184)
346 3kb2_A SPBC2 prophage-derived 96.4 0.0016 5.4E-08 59.2 3.5 35 256-293 3-37 (173)
347 1m7g_A Adenylylsulfate kinase; 96.4 0.0058 2E-07 57.9 7.5 40 252-291 23-65 (211)
348 1vht_A Dephospho-COA kinase; s 96.4 0.0021 7.2E-08 61.2 4.5 31 534-565 4-34 (218)
349 1ly1_A Polynucleotide kinase; 96.4 0.0016 5.4E-08 59.7 3.4 32 254-288 2-34 (181)
350 1knq_A Gluconate kinase; ALFA/ 96.4 0.0031 1.1E-07 57.7 5.4 35 254-291 8-42 (175)
351 3t61_A Gluconokinase; PSI-biol 96.4 0.0025 8.4E-08 59.9 4.8 35 254-291 18-52 (202)
352 2qt1_A Nicotinamide riboside k 96.4 0.002 7E-08 60.8 4.2 35 531-565 18-53 (207)
353 1z47_A CYSA, putative ABC-tran 96.4 0.0024 8E-08 65.8 5.0 27 252-278 39-65 (355)
354 3be4_A Adenylate kinase; malar 96.4 0.0024 8.3E-08 60.9 4.8 36 255-293 6-41 (217)
355 4e22_A Cytidylate kinase; P-lo 96.4 0.0018 6.3E-08 63.4 4.0 32 533-564 26-57 (252)
356 3cm0_A Adenylate kinase; ATP-b 96.4 0.0021 7.1E-08 59.4 4.1 37 254-293 4-40 (186)
357 3d3q_A TRNA delta(2)-isopenten 96.4 0.0016 5.5E-08 66.4 3.6 37 535-571 8-44 (340)
358 2yvu_A Probable adenylyl-sulfa 96.4 0.0032 1.1E-07 58.3 5.3 37 532-568 11-50 (186)
359 4dcu_A GTP-binding protein ENG 96.4 0.041 1.4E-06 58.6 14.7 24 534-557 195-218 (456)
360 3gfo_A Cobalt import ATP-bindi 96.3 0.0034 1.2E-07 62.3 5.6 27 252-278 32-58 (275)
361 1tf7_A KAIC; homohexamer, hexa 96.3 0.007 2.4E-07 65.9 8.5 29 529-557 276-304 (525)
362 2cvh_A DNA repair and recombin 96.3 0.0029 9.8E-08 60.0 4.8 40 530-569 16-55 (220)
363 3bh0_A DNAB-like replicative h 96.3 0.012 4.1E-07 59.6 9.7 38 250-287 64-103 (315)
364 1w4r_A Thymidine kinase; type 96.3 0.013 4.5E-07 54.6 9.1 34 254-287 20-55 (195)
365 1e6c_A Shikimate kinase; phosp 96.3 0.0049 1.7E-07 56.0 6.1 36 255-293 3-38 (173)
366 1m7g_A Adenylylsulfate kinase; 96.3 0.0032 1.1E-07 59.6 5.0 37 532-568 23-63 (211)
367 1q3t_A Cytidylate kinase; nucl 96.3 0.0023 8E-08 61.8 3.9 33 532-564 14-46 (236)
368 3lw7_A Adenylate kinase relate 96.3 0.0027 9.2E-08 57.5 4.1 33 256-292 3-35 (179)
369 1zak_A Adenylate kinase; ATP:A 96.3 0.0023 8E-08 61.1 3.8 38 253-293 4-41 (222)
370 2h92_A Cytidylate kinase; ross 96.3 0.0022 7.6E-08 61.0 3.6 31 535-565 4-34 (219)
371 3fdi_A Uncharacterized protein 96.3 0.0026 8.9E-08 60.1 4.0 29 536-564 8-36 (201)
372 1ukz_A Uridylate kinase; trans 96.3 0.0032 1.1E-07 59.0 4.7 38 253-293 14-51 (203)
373 1ltq_A Polynucleotide kinase; 96.3 0.0019 6.5E-08 64.8 3.2 32 535-566 3-35 (301)
374 2px0_A Flagellar biosynthesis 96.3 0.028 9.5E-07 56.3 11.8 36 253-288 104-142 (296)
375 3d31_A Sulfate/molybdate ABC t 96.2 0.0037 1.3E-07 64.2 5.3 28 251-278 23-50 (348)
376 2f6r_A COA synthase, bifunctio 96.2 0.0025 8.6E-08 63.5 4.0 31 534-565 75-105 (281)
377 1w36_D RECD, exodeoxyribonucle 96.2 0.02 6.7E-07 63.5 11.5 24 255-278 165-188 (608)
378 2qor_A Guanylate kinase; phosp 96.2 0.0024 8.2E-08 60.2 3.5 28 532-559 10-37 (204)
379 3uie_A Adenylyl-sulfate kinase 96.2 0.0028 9.4E-08 59.6 3.9 40 252-291 23-64 (200)
380 2v54_A DTMP kinase, thymidylat 96.2 0.0033 1.1E-07 58.9 4.4 33 253-285 3-35 (204)
381 1rz3_A Hypothetical protein rb 96.2 0.0097 3.3E-07 55.9 7.7 42 525-566 13-57 (201)
382 1uj2_A Uridine-cytidine kinase 96.2 0.0024 8E-08 62.5 3.5 30 533-562 21-50 (252)
383 2pez_A Bifunctional 3'-phospho 96.2 0.004 1.4E-07 57.2 4.9 37 253-289 4-42 (179)
384 1ye8_A Protein THEP1, hypothet 96.2 0.002 6.7E-08 59.7 2.7 28 536-563 2-29 (178)
385 3b6e_A Interferon-induced heli 96.2 0.012 4E-07 55.4 8.2 24 255-278 49-72 (216)
386 1odf_A YGR205W, hypothetical 3 96.2 0.0074 2.5E-07 60.4 7.0 48 512-559 9-56 (290)
387 2bdt_A BH3686; alpha-beta prot 96.2 0.0029 9.9E-08 58.7 3.7 32 536-568 4-35 (189)
388 3gmt_A Adenylate kinase; ssgci 96.2 0.0022 7.5E-08 61.8 2.9 30 536-565 10-39 (230)
389 1nks_A Adenylate kinase; therm 96.2 0.0025 8.4E-08 59.0 3.2 24 256-279 3-26 (194)
390 2pt5_A Shikimate kinase, SK; a 96.1 0.0038 1.3E-07 56.5 4.4 35 256-293 2-36 (168)
391 2gxq_A Heat resistant RNA depe 96.1 0.016 5.5E-07 54.1 8.9 24 254-277 38-62 (207)
392 2yvu_A Probable adenylyl-sulfa 96.1 0.0049 1.7E-07 57.0 5.2 39 252-290 11-51 (186)
393 2vli_A Antibiotic resistance p 96.1 0.0021 7.2E-08 59.1 2.6 26 254-279 5-30 (183)
394 3fb4_A Adenylate kinase; psych 96.1 0.0043 1.5E-07 58.8 4.9 35 256-293 2-36 (216)
395 2qor_A Guanylate kinase; phosp 96.1 0.0033 1.1E-07 59.3 3.9 29 251-279 9-37 (204)
396 3dl0_A Adenylate kinase; phosp 96.1 0.003 1E-07 60.0 3.7 35 256-293 2-36 (216)
397 3hr8_A Protein RECA; alpha and 96.1 0.0049 1.7E-07 63.4 5.5 42 529-570 56-100 (356)
398 2j41_A Guanylate kinase; GMP, 96.1 0.003 1E-07 59.2 3.7 28 251-278 3-30 (207)
399 2bbw_A Adenylate kinase 4, AK4 96.1 0.0037 1.3E-07 60.8 4.4 26 254-279 27-52 (246)
400 3nwj_A ATSK2; P loop, shikimat 96.1 0.0047 1.6E-07 60.4 5.0 38 254-294 48-85 (250)
401 3gd7_A Fusion complex of cysti 96.1 0.0072 2.5E-07 63.0 6.7 28 251-278 44-71 (390)
402 2plr_A DTMP kinase, probable t 96.1 0.0034 1.1E-07 59.1 3.8 27 254-280 4-30 (213)
403 2ze6_A Isopentenyl transferase 96.1 0.0037 1.3E-07 61.3 4.2 24 256-279 3-26 (253)
404 1kgd_A CASK, peripheral plasma 96.1 0.0036 1.2E-07 57.8 3.9 27 253-279 4-30 (180)
405 1n0w_A DNA repair protein RAD5 96.1 0.0044 1.5E-07 59.7 4.6 41 529-569 19-68 (243)
406 1v43_A Sugar-binding transport 96.1 0.0026 8.8E-08 65.9 3.1 27 252-278 35-61 (372)
407 3k1j_A LON protease, ATP-depen 96.1 0.0025 8.4E-08 70.8 3.1 26 535-560 61-86 (604)
408 3zvl_A Bifunctional polynucleo 96.0 0.0027 9.1E-08 67.1 3.2 35 532-566 256-290 (416)
409 3c8u_A Fructokinase; YP_612366 96.0 0.0029 9.8E-08 59.9 2.9 36 532-567 20-60 (208)
410 2wwf_A Thymidilate kinase, put 96.0 0.0042 1.5E-07 58.5 4.0 27 253-279 9-35 (212)
411 2j41_A Guanylate kinase; GMP, 96.0 0.0037 1.3E-07 58.6 3.5 26 533-558 5-30 (207)
412 1kgd_A CASK, peripheral plasma 96.0 0.0042 1.4E-07 57.3 3.8 25 535-559 6-30 (180)
413 2if2_A Dephospho-COA kinase; a 96.0 0.0067 2.3E-07 56.9 5.2 35 256-294 3-37 (204)
414 2fna_A Conserved hypothetical 95.9 0.0048 1.7E-07 62.8 4.5 35 535-569 31-65 (357)
415 2grj_A Dephospho-COA kinase; T 95.9 0.0075 2.6E-07 56.4 5.4 40 254-296 12-51 (192)
416 1nn5_A Similar to deoxythymidy 95.9 0.0045 1.5E-07 58.4 3.8 28 252-279 7-34 (215)
417 4a74_A DNA repair and recombin 95.9 0.0077 2.6E-07 57.3 5.5 30 529-558 20-49 (231)
418 1qde_A EIF4A, translation init 95.9 0.032 1.1E-06 52.9 9.8 24 254-277 51-75 (224)
419 3zvl_A Bifunctional polynucleo 95.8 0.011 3.9E-07 62.2 6.9 37 252-291 256-292 (416)
420 3asz_A Uridine kinase; cytidin 95.8 0.0041 1.4E-07 58.7 3.2 33 532-564 4-38 (211)
421 1uf9_A TT1252 protein; P-loop, 95.8 0.0053 1.8E-07 57.3 3.9 37 253-293 7-43 (203)
422 3e70_C DPA, signal recognition 95.8 0.051 1.7E-06 55.2 11.4 27 252-278 127-153 (328)
423 3tau_A Guanylate kinase, GMP k 95.8 0.0052 1.8E-07 58.1 3.8 27 533-559 7-33 (208)
424 3tr0_A Guanylate kinase, GMP k 95.8 0.0058 2E-07 57.2 4.1 33 533-567 6-38 (205)
425 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.004 1.4E-07 63.6 3.1 74 252-333 169-251 (330)
426 1e4v_A Adenylate kinase; trans 95.8 0.005 1.7E-07 58.4 3.5 34 256-292 2-35 (214)
427 2jaq_A Deoxyguanosine kinase; 95.8 0.0051 1.7E-07 57.4 3.5 24 256-279 2-25 (205)
428 2pbr_A DTMP kinase, thymidylat 95.8 0.005 1.7E-07 57.0 3.5 23 256-278 2-24 (195)
429 3tau_A Guanylate kinase, GMP k 95.8 0.0055 1.9E-07 58.0 3.7 27 253-279 7-33 (208)
430 3io5_A Recombination and repai 95.7 0.0078 2.7E-07 60.5 4.8 39 533-571 27-70 (333)
431 2xb4_A Adenylate kinase; ATP-b 95.7 0.0069 2.4E-07 58.0 4.3 35 256-293 2-36 (223)
432 1x6v_B Bifunctional 3'-phospho 95.7 0.0074 2.5E-07 66.6 5.0 35 533-567 51-88 (630)
433 1pzn_A RAD51, DNA repair and r 95.7 0.0099 3.4E-07 61.1 5.6 42 528-569 125-175 (349)
434 2z0h_A DTMP kinase, thymidylat 95.7 0.0064 2.2E-07 56.5 3.8 23 257-279 3-25 (197)
435 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0045 1.6E-07 59.0 2.8 28 530-557 19-46 (235)
436 1rz3_A Hypothetical protein rb 95.6 0.018 6.3E-07 53.9 6.9 27 252-278 20-46 (201)
437 3tr0_A Guanylate kinase, GMP k 95.6 0.0071 2.4E-07 56.6 3.9 27 252-278 5-31 (205)
438 1lvg_A Guanylate kinase, GMP k 95.6 0.0064 2.2E-07 57.1 3.5 27 253-279 3-29 (198)
439 3r20_A Cytidylate kinase; stru 95.6 0.0089 3E-07 57.7 4.6 36 254-292 9-44 (233)
440 2z43_A DNA repair and recombin 95.6 0.0083 2.8E-07 61.0 4.6 41 529-569 102-151 (324)
441 3c8u_A Fructokinase; YP_612366 95.6 0.01 3.6E-07 56.0 5.0 28 252-279 20-47 (208)
442 1jjv_A Dephospho-COA kinase; P 95.6 0.0088 3E-07 56.2 4.5 33 256-292 4-36 (206)
443 3iuy_A Probable ATP-dependent 95.6 0.099 3.4E-06 49.6 12.0 20 253-272 56-75 (228)
444 1htw_A HI0065; nucleotide-bind 95.6 0.0091 3.1E-07 54.0 4.3 29 250-278 29-57 (158)
445 1q0u_A Bstdead; DEAD protein, 95.6 0.032 1.1E-06 52.8 8.3 19 255-273 42-60 (219)
446 3crm_A TRNA delta(2)-isopenten 95.5 0.0098 3.4E-07 60.2 4.8 26 254-279 5-30 (323)
447 3hdt_A Putative kinase; struct 95.5 0.0078 2.7E-07 57.7 3.9 31 534-564 14-44 (223)
448 4eaq_A DTMP kinase, thymidylat 95.5 0.012 4.2E-07 56.6 5.3 36 533-568 25-62 (229)
449 1cke_A CK, MSSA, protein (cyti 95.5 0.0082 2.8E-07 57.2 4.0 35 255-292 6-40 (227)
450 1uj2_A Uridine-cytidine kinase 95.5 0.011 3.6E-07 57.8 4.9 41 253-293 21-68 (252)
451 2dr3_A UPF0273 protein PH0284; 95.5 0.012 4.1E-07 56.6 5.2 40 529-568 18-60 (247)
452 2bdt_A BH3686; alpha-beta prot 95.5 0.0075 2.5E-07 55.8 3.6 34 256-291 4-37 (189)
453 1hv8_A Putative ATP-dependent 95.5 0.03 1E-06 57.0 8.5 24 254-277 44-67 (367)
454 2ehv_A Hypothetical protein PH 95.5 0.0056 1.9E-07 59.1 2.8 38 530-567 26-67 (251)
455 2qt1_A Nicotinamide riboside k 95.5 0.011 3.6E-07 55.7 4.6 38 252-291 19-56 (207)
456 3llm_A ATP-dependent RNA helic 95.5 0.035 1.2E-06 53.3 8.5 23 253-275 75-97 (235)
457 3v9p_A DTMP kinase, thymidylat 95.5 0.013 4.3E-07 56.4 5.2 36 533-568 24-66 (227)
458 3b9q_A Chloroplast SRP recepto 95.5 0.013 4.3E-07 59.0 5.3 29 250-278 96-124 (302)
459 1htw_A HI0065; nucleotide-bind 95.5 0.022 7.6E-07 51.4 6.4 31 528-558 27-57 (158)
460 2xau_A PRE-mRNA-splicing facto 95.5 0.025 8.6E-07 64.4 8.3 60 213-277 71-132 (773)
461 4gp7_A Metallophosphoesterase; 95.4 0.0071 2.4E-07 55.3 3.1 23 533-555 8-30 (171)
462 1z6g_A Guanylate kinase; struc 95.4 0.0083 2.8E-07 57.2 3.7 29 251-279 20-48 (218)
463 2ged_A SR-beta, signal recogni 95.4 0.011 3.7E-07 54.6 4.4 47 512-558 26-72 (193)
464 1v5w_A DMC1, meiotic recombina 95.4 0.015 5E-07 59.7 5.7 41 529-569 117-166 (343)
465 3gmt_A Adenylate kinase; ssgci 95.4 0.026 8.8E-07 54.2 7.0 36 256-294 10-45 (230)
466 2qen_A Walker-type ATPase; unk 95.4 0.01 3.5E-07 60.3 4.4 31 535-567 32-62 (350)
467 3ney_A 55 kDa erythrocyte memb 95.4 0.013 4.5E-07 55.0 4.7 27 533-559 18-44 (197)
468 2v9p_A Replication protein E1; 95.3 0.011 3.7E-07 59.5 4.3 31 249-279 121-151 (305)
469 3a00_A Guanylate kinase, GMP k 95.3 0.0092 3.2E-07 55.2 3.5 25 255-279 2-26 (186)
470 1lvg_A Guanylate kinase, GMP k 95.3 0.0069 2.4E-07 56.8 2.6 25 534-558 4-28 (198)
471 1ex7_A Guanylate kinase; subst 95.3 0.01 3.6E-07 55.1 3.8 26 537-562 4-29 (186)
472 2og2_A Putative signal recogni 95.3 0.015 5.1E-07 59.9 5.3 29 250-278 153-181 (359)
473 1u94_A RECA protein, recombina 95.3 0.012 4.1E-07 60.6 4.5 41 529-569 58-101 (356)
474 1q57_A DNA primase/helicase; d 95.3 0.043 1.5E-06 59.3 9.2 39 250-288 238-279 (503)
475 3bgw_A DNAB-like replicative h 95.3 0.042 1.4E-06 58.3 8.9 39 250-288 193-233 (444)
476 1vht_A Dephospho-COA kinase; s 95.3 0.016 5.5E-07 54.9 5.2 36 254-293 4-39 (218)
477 3a00_A Guanylate kinase, GMP k 95.3 0.0089 3E-07 55.4 3.2 23 537-559 4-26 (186)
478 2zr9_A Protein RECA, recombina 95.3 0.014 4.6E-07 60.1 4.8 41 529-569 56-99 (349)
479 1gtv_A TMK, thymidylate kinase 95.2 0.0038 1.3E-07 58.9 0.6 23 537-559 3-25 (214)
480 3tqf_A HPR(Ser) kinase; transf 95.2 0.014 4.7E-07 53.3 4.1 30 534-564 16-45 (181)
481 1vt4_I APAF-1 related killer D 95.2 0.13 4.6E-06 59.6 13.1 44 221-277 130-173 (1221)
482 3thx_B DNA mismatch repair pro 95.2 0.036 1.2E-06 64.0 8.5 25 252-276 671-695 (918)
483 4edh_A DTMP kinase, thymidylat 95.2 0.029 9.8E-07 53.3 6.5 35 534-568 6-43 (213)
484 4eaq_A DTMP kinase, thymidylat 95.2 0.02 6.7E-07 55.1 5.4 28 253-280 25-52 (229)
485 4a1f_A DNAB helicase, replicat 95.1 0.064 2.2E-06 54.6 9.3 38 250-287 42-81 (338)
486 1ny5_A Transcriptional regulat 95.1 0.017 5.6E-07 60.3 4.9 37 534-570 160-199 (387)
487 1sky_E F1-ATPase, F1-ATP synth 95.1 0.19 6.4E-06 53.3 13.0 24 255-278 152-175 (473)
488 1znw_A Guanylate kinase, GMP k 95.1 0.013 4.5E-07 55.2 3.8 29 251-279 17-45 (207)
489 4e22_A Cytidylate kinase; P-lo 95.0 0.019 6.4E-07 56.1 4.9 36 253-291 26-61 (252)
490 3lda_A DNA repair protein RAD5 95.0 0.019 6.6E-07 60.0 5.2 41 529-569 173-222 (400)
491 2j37_W Signal recognition part 95.0 0.05 1.7E-06 58.5 8.6 37 252-288 99-137 (504)
492 2ga8_A Hypothetical 39.9 kDa p 95.0 0.024 8.1E-07 58.0 5.7 25 255-279 25-49 (359)
493 2oxc_A Probable ATP-dependent 95.0 0.1 3.6E-06 49.6 10.1 19 254-272 61-79 (230)
494 1cr0_A DNA primase/helicase; R 95.0 0.013 4.6E-07 58.4 3.8 40 249-288 30-72 (296)
495 1z6g_A Guanylate kinase; struc 95.0 0.011 3.6E-07 56.5 2.9 27 532-558 21-47 (218)
496 1znw_A Guanylate kinase, GMP k 95.0 0.012 4.2E-07 55.4 3.3 26 533-558 19-44 (207)
497 1ltq_A Polynucleotide kinase; 95.0 0.013 4.3E-07 58.7 3.5 34 255-290 3-36 (301)
498 1nlf_A Regulatory protein REPA 95.0 0.01 3.5E-07 58.8 2.8 24 533-556 29-52 (279)
499 3asz_A Uridine kinase; cytidin 94.9 0.014 4.7E-07 55.0 3.5 27 253-279 5-31 (211)
500 1xx6_A Thymidine kinase; NESG, 94.9 0.027 9.2E-07 52.6 5.4 95 257-378 11-119 (191)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.4e-81 Score=708.12 Aligned_cols=529 Identities=28% Similarity=0.398 Sum_probs=450.9
Q ss_pred eEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCc---EEEEEeeCCCCCCCceeeCHhhhhccCccCCCe
Q 007661 14 TMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTGDH 90 (594)
Q Consensus 14 ~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~ 90 (594)
+|.|..+.+++ .+.|++||++|.+|++. .|++|.|+|++ .++.+.++++++.+.|+||+.+|+|+++++||.
T Consensus 25 ~~~v~~~~~~d---~~~~~~~~~~~~~l~~~--~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd~ 99 (806)
T 3cf2_A 25 RLIVDEAINED---NSVVSLSQPKMDELQLF--RGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDV 99 (806)
T ss_dssp EEECBCCSSCC---TTEEEECHHHHHHTTCC--SSCEEEEECGGGCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTCE
T ss_pred eEEEccCCCCC---CCEEEECHHHHHHcCCC--CCCEEEEEcCCCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCCE
Confidence 68888887665 67999999999999993 24899998753 455667788999999999999999999999999
Q ss_pred EEEEEeCCCCcceeEeEEEE-eeeeecCCccccccHHHHHHHHHHHhc--cCcccCCcEEEEEEcCeeEEEEEEEeeecC
Q 007661 91 VSLNRFIPPEDFNLALLTVE-LEFVKKGSKNEQVDAVLLANQLRKRFI--NQVMTAGQRVVFEYHGNNYIFTVNGAAVEG 167 (594)
Q Consensus 91 v~v~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~ 167 (594)
|+|+++... ..+..|++. ++. ....++...+..+++..|. +++|..|+.+.+...+..+.|+|++++|
T Consensus 100 V~v~~~~~~--~~a~~v~l~p~~~-----~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P-- 170 (806)
T 3cf2_A 100 ISIQPCPDV--KYGKRIHVLPIDD-----TVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDP-- 170 (806)
T ss_dssp EEEEECCCC--CBCSBEEEEEBTT-----TSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESS--
T ss_pred EEEEECCCC--CcCCEEEEecccc-----chhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeC--
Confidence 999998522 123334432 111 1122334455666777764 4789999999998888889999999988
Q ss_pred ccccccccceeEcCCcEEEEEecCCCceeeecccCCccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhh
Q 007661 168 QEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTS 247 (594)
Q Consensus 168 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~ 247 (594)
.+.++++++|.|.+...+... .......|+++|+| |||+++++++| ++++.+|+.+|++|.
T Consensus 171 ------~~~~~v~~~T~i~~~~~~~~~----------~~~~~~~~~v~~~d--IgGl~~~~~~l-~e~v~~pl~~p~~f~ 231 (806)
T 3cf2_A 171 ------SPYCIVAPDTVIHCEGEPIKR----------EDEEESLNEVGYDD--IGGCRKQLAQI-KEMVELPLRHPALFK 231 (806)
T ss_dssp ------SSEEECCTTSBCCBCSCCBCC----------CTTSCCSSSCCGGG--CCSCCTTHHHH-HHHHHHHHHCCGGGT
T ss_pred ------CCCeEECCCcEEEEeccccCc----------ccccccCCCCChhh--hcCHHHHHHHH-HHHHHHHccCHHHHh
Confidence 457888888888765432111 00111237899999 99999999999 999999999999999
Q ss_pred hcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEE
Q 007661 248 KLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVII 327 (594)
Q Consensus 248 ~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~ 327 (594)
++|+++|+|||||||||||||++||++|+++ +.+++.++++++.++|.|+++.+++++|+.|+..+ |+|||
T Consensus 232 ~~g~~~p~GILL~GPPGTGKT~LAraiA~el-g~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~--------PsIIf 302 (806)
T 3cf2_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------PAIIF 302 (806)
T ss_dssp SCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-TCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSC--------SEEEE
T ss_pred hcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-CCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcC--------CeEEE
Confidence 9999999999999999999999999999998 46788999999999999999999999999999875 56999
Q ss_pred EccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHH
Q 007661 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQI 407 (594)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~I 407 (594)
|||||+|+++++...+ +..++++++|+..||++....+|+|||+||+++.||++|+|+|||+++|++++||.++|.+|
T Consensus 303 IDEiDal~~~r~~~~~--~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~I 380 (806)
T 3cf2_A 303 IDELDAIAPKREKTHG--EVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEI 380 (806)
T ss_dssp EESGGGTCCTTTTCCC--TTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHH
T ss_pred EehhcccccccCCCCC--hHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHH
Confidence 9999999999876543 56789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCc----ccchhhcchhHHHHHH
Q 007661 408 LQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPV----DEESIKVTMDDFLHAL 483 (594)
Q Consensus 408 L~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~----~~~~~~vt~~df~~al 483 (594)
|+.|++++. +..++|+..||..|+||+|+||.++|++|.+.|++|.....+..... ..+...++++||..|+
T Consensus 381 L~~~l~~~~----~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al 456 (806)
T 3cf2_A 381 LQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWAL 456 (806)
T ss_dssp HHHTCSSSE----ECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHH
T ss_pred HHHHhcCCC----CCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHH
Confidence 999998887 66889999999999999999999999999999998876543332211 2245679999999999
Q ss_pred HhcccCCCc----CCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 484 YEIVPAFGA----STDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 484 ~~~~ps~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
..+.|++.. ..+.+.|..++|+.+.+..+.+.+.++..+++.+.+.+.+|+.|+|||||||||||++|+++|++++
T Consensus 457 ~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp SSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 999998643 3567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeccccc---cccccchhhhHHHHHHHhhhcCC
Q 007661 560 FPFVKIISAESM---IGLHESTKCAQIVKVSECQFSGS 594 (594)
Q Consensus 560 ~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~~ 594 (594)
+||+++++|+++ +|+||++ ||++|+.||+++
T Consensus 537 ~~f~~v~~~~l~s~~vGese~~----vr~lF~~Ar~~~ 570 (806)
T 3cf2_A 537 ANFISIKGPELLTMWFGESEAN----VREIFDKARQAA 570 (806)
T ss_dssp CEEEECCHHHHHTTTCSSCHHH----HHHHHHHHHTTC
T ss_pred CceEEeccchhhccccchHHHH----HHHHHHHHHHcC
Confidence 999999999994 9999998 999999999753
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=6e-59 Score=534.82 Aligned_cols=528 Identities=28% Similarity=0.391 Sum_probs=424.7
Q ss_pred eeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCc---EEEEEeeCCCCCCCceeeCHhhhhccCccCCC
Q 007661 13 TTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTGD 89 (594)
Q Consensus 13 ~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~ 89 (594)
.+|+|..+...+. +.|+++|+.|.+|++. .|++|.|.|++ ++..++++++++.+.|+||+..|.|+|+.+||
T Consensus 24 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (806)
T 1ypw_A 24 NRLIVDEAINEDN---SVVSLSQPKMDELQLF--RGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 98 (806)
T ss_dssp TEEEEECCSSCCS---SCEEECHHHHHHHTCC--TTCEEEEEETTTEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTC
T ss_pred ceEEEccCcCCcC---CEEEECHHHHHHcCCC--CCCEEEEecCccCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCC
Confidence 3799999876653 8999999999999994 24999998765 67788998889999999999999999999999
Q ss_pred eEEEEEeC-CCCcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhc--cCcccCCcEEEEEEcCeeEEEEEEEeeec
Q 007661 90 HVSLNRFI-PPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFI--NQVMTAGQRVVFEYHGNNYIFTVNGAAVE 166 (594)
Q Consensus 90 ~v~v~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~~ 166 (594)
.|+|+++. ++ ++..|++.-- ... ...+....+..+++.+|. ++++.+|+.+.+......+.|+|++++|
T Consensus 99 ~v~~~~~~~~~---~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p- 170 (806)
T 1ypw_A 99 VISIQPCPDVK---YGKRIHVLPI--DDT--VEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDP- 170 (806)
T ss_dssp EEEEEECTTCC---BCSEEEEEEC--TTT--SSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETT-
T ss_pred EEEEEECCCCC---cCcEEEEeCC--ccc--hhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccC-
Confidence 99999993 33 2333443210 000 011111223345666665 5889999988777666779999999988
Q ss_pred CccccccccceeEcCCcEEEEEecCCCceeeecccCCccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhh
Q 007661 167 GQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVT 246 (594)
Q Consensus 167 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~ 246 (594)
.....+.+.|.+.+....... .. .. ...++++|++ |+|++.+++++ ++++..++.+|+++
T Consensus 171 -------~~~~~v~~~t~~~~~~~~~~~---~~-----~~--~~~~~v~~~d--i~G~~~~~~~l-~e~i~~~l~~~~~~ 230 (806)
T 1ypw_A 171 -------SPYCIVAPDTVIHCEGEPIKR---ED-----EE--ESLNEVGYDD--VGGCRKQLAQI-KEMVELPLRHPALF 230 (806)
T ss_dssp -------TTCCBCCSSSEEEECSCCCCC---CT-----TS--CCSSSCCGGG--CCSCSGGGGHH-HHHHHHHHHCGGGG
T ss_pred -------CCCceecCCeEEEecCccccc---hh-----hh--cccCCCCHHH--hCChHHHHHHH-HHHHHHHhhCHHHH
Confidence 456788889988875432111 00 00 0126789999 99999999999 89999999999999
Q ss_pred hhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEE
Q 007661 247 SKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVI 326 (594)
Q Consensus 247 ~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il 326 (594)
..++++++.++||+||||||||++|++++..+ ...++.++++++.+.+.|+.+..++.+|+.+.... |+++
T Consensus 231 ~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~--------p~il 301 (806)
T 1ypw_A 231 KAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------PAII 301 (806)
T ss_dssp TSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHC--------SEEE
T ss_pred HhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcC--------CcEE
Confidence 99999999999999999999999999999998 46678899999999999999999999999998875 5599
Q ss_pred EEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHH
Q 007661 327 IFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQ 406 (594)
Q Consensus 327 ~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~ 406 (594)
||||+|.++++++... .+...+++.+|+..+++.....++++|++||+++.+|+++++++||+..+.++.|+.++|.+
T Consensus 302 ~iDEid~l~~~~~~~~--~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~ 379 (806)
T 1ypw_A 302 FIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp EEESGGGTSCTTSCCC--SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHH
T ss_pred EeccHHHhhhcccccc--chHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHH
Confidence 9999999998876533 35667889999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCC----cccchhhcchhHHHHH
Q 007661 407 ILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKP----VDEESIKVTMDDFLHA 482 (594)
Q Consensus 407 IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~----~~~~~~~vt~~df~~a 482 (594)
||+.+++++. +..+.++..++..++||+++++..++++|...++++.......... .......++.+||..+
T Consensus 380 il~~~~~~~~----l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~a 455 (806)
T 1ypw_A 380 ILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWA 455 (806)
T ss_dssp HHHHTTTTSC----CCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHH
T ss_pred HHHHHHhcCC----CcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhcc
Confidence 9999888776 5677889999999999999999999999999888775433221110 0123456889999999
Q ss_pred HHhcccCCC----cCCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc
Q 007661 483 LYEIVPAFG----ASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 483 l~~~~ps~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
+....|+.. ...+.+.|..+.|+...+..+.+.+.++..+.+.+...+..|+.++|||||||||||+||+++|.++
T Consensus 456 l~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 456 LSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp HHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 998877643 2334566666777666665555555554444455556677889999999999999999999999999
Q ss_pred CCCEEEEecccc---ccccccchhhhHHHHHHHhhhc
Q 007661 559 DFPFVKIISAES---MIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 559 ~~~fi~v~~~e~---~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
+.+|+.++++++ |+|++|++ ++.+|+.|+.
T Consensus 536 ~~~~i~v~~~~l~~~~~g~~~~~----i~~~f~~a~~ 568 (806)
T 1ypw_A 536 QANFISIKGPELLTMWFGESEAN----VREIFDKARQ 568 (806)
T ss_dssp TCCCCCCCCSSSTTCCTTTSSHH----HHHHHHHHHH
T ss_pred CCCEEEEechHhhhhhcCccHHH----HHHHHHHHHh
Confidence 999999999998 49999987 9999999975
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-51 Score=430.89 Aligned_cols=287 Identities=31% Similarity=0.528 Sum_probs=253.3
Q ss_pred ccceeEcCCcEEEEEecCCCceeeecccCCc---cccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcC
Q 007661 174 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (594)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (594)
.+...+.+++.|.+........++.+....+ ...+.+.|+++|+| ||||++++++| ++++.+|+.+|++|.++|
T Consensus 102 ~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~d--IgGl~~~k~~l-~e~v~~Pl~~pe~f~~~g 178 (405)
T 4b4t_J 102 INVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDM--VGGLTKQIKEI-KEVIELPVKHPELFESLG 178 (405)
T ss_dssp SCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGG--SCSCHHHHHHH-HHHTHHHHHCHHHHHHHT
T ss_pred cCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHH--hCCHHHHHHHH-HHHHHHHHhCHHHHHhCC
Confidence 3445567788888877766666666544221 12234569999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+++|+|+|||||||||||++|+++|+++ +.+++.++++++.++|+|++++.++++|+.|+..+ ||||||||
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~a--------P~IIFiDE 249 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT-DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA--------PSIIFMDE 249 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH-TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTC--------SEEEEEES
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh-CCCceEEEhHHhhccccchHHHHHHHHHHHHHHhC--------CceEeeec
Confidence 9999999999999999999999999998 57788999999999999999999999999999885 56999999
Q ss_pred chhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
+|+++++|....+ +.....+++++||+.||++....+++||||||+|+.||+|++|||||+..|+|++||.++|.+||+
T Consensus 250 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 250 IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329 (405)
T ss_dssp SSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred chhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHH
Confidence 9999998866543 234567789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccC
Q 007661 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (594)
Q Consensus 410 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps 489 (594)
.|+++++ +..++|+..||+.|+||||+||.++|++|++.|+++. ...|+++||..|++++.+.
T Consensus 330 ~~~~~~~----l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~-------------~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 330 IHSRKMN----LTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER-------------RIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHTTSB----CCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-------------CSBCCHHHHHHHHHHHHHH
T ss_pred HHhcCCC----CCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHHHhCc
Confidence 9999887 6788999999999999999999999999999998752 3569999999999988664
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-50 Score=423.60 Aligned_cols=287 Identities=28% Similarity=0.489 Sum_probs=253.3
Q ss_pred ccceeEcCCcEEEEEecCCCceeeecccCCc---cccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcC
Q 007661 174 LERGIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLG 250 (594)
Q Consensus 174 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g 250 (594)
.+...+.+++.|.+.....+.+.+.+....+ ...+.+.|+++|+| ||||++++++| ++++.+|+.+|++|.++|
T Consensus 136 ~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~D--IgGld~~k~~L-~e~v~~Pl~~pe~f~~~G 212 (437)
T 4b4t_I 136 VDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSD--IGGLESQIQEI-KESVELPLTHPELYEEMG 212 (437)
T ss_dssp SCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGG--TCSCHHHHHHH-HHHHHHHHHCCHHHHHHT
T ss_pred cCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCccee--cCcHHHHHHHH-HHHHHHHHhCHHHHHhCC
Confidence 3455677788888777666666666543221 12234569999999 99999999999 999999999999999999
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+++|+|||||||||||||++|+++|+++ +.+++.++++++.++|+|++++.++.+|+.|+..+ ||||||||
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~-~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~a--------P~IIfiDE 283 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQT-SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENA--------PSIVFIDE 283 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHH-TCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTC--------SEEEEEEE
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHh-CCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcC--------CcEEEEeh
Confidence 9999999999999999999999999998 57788999999999999999999999999999885 56999999
Q ss_pred chhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 331 IDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 331 id~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
+|+++++|..... +.....+++.+||+.||++....+++||||||+|+.||+||+|||||+++|+|++||.++|.+||+
T Consensus 284 iDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 284 IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILG 363 (437)
T ss_dssp ESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHH
T ss_pred hhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHH
Confidence 9999999865443 334567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccC
Q 007661 410 IHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (594)
Q Consensus 410 ~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps 489 (594)
.|+++++ +..++|++.||+.|+||||+||+++|++|++.|+++. ...|+++||..|++.+.|+
T Consensus 364 ~~l~~~~----l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~-------------~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 364 IHTSKMN----LSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER-------------RMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHTTSC----BCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT-------------CSCBCHHHHHHHHHHHHHH
T ss_pred HHhcCCC----CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------------CCccCHHHHHHHHHHHhCC
Confidence 9999887 6788999999999999999999999999999998753 3469999999999998775
No 5
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=3.7e-48 Score=420.57 Aligned_cols=444 Identities=29% Similarity=0.433 Sum_probs=345.7
Q ss_pred eeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCc---EEEEEeeCCCCCCCceeeCHhhhhccCccCCC
Q 007661 13 TTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTGD 89 (594)
Q Consensus 13 ~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~ 89 (594)
.+|+|..+...+ .+.||+||+.|.+|++. .|++|.|+|++ .+..++++++++++.|+||+..|+|+|+.+||
T Consensus 24 ~~~~v~~~~~~d---~~~~~~~~~~~~~l~~~--~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd 98 (489)
T 3hu3_A 24 NRLIVDEAINED---NSVVSLSQPKMDELQLF--RGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 98 (489)
T ss_dssp TEEEEECCTTCC---TTEEEECHHHHHHHTCC--TTCEEEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTC
T ss_pred CeeEEccCCCCc---CCEEEECHHHHHHcCCC--CCCEEEEecCccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCC
Confidence 379999997665 49999999999999994 24999998865 78888998889999999999999999999999
Q ss_pred eEEEEEeC-CCCcceeEeEEEE-eeeeecCCccccccHHHHHHHHHHHh-cc--CcccCCcEEEEEEcCeeEEEEEEEee
Q 007661 90 HVSLNRFI-PPEDFNLALLTVE-LEFVKKGSKNEQVDAVLLANQLRKRF-IN--QVMTAGQRVVFEYHGNNYIFTVNGAA 164 (594)
Q Consensus 90 ~v~v~~~~-~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~g~~~~~~~~~~~~~~~v~~~~ 164 (594)
.|+|+++. .+ .+..|++. ++..... +....+ .++.+-| .. .++..|+.+.+......+.+.+...+
T Consensus 99 ~v~v~~~~~~~---~a~~v~~~~~~~av~a-----~~~ga~-d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (489)
T 3hu3_A 99 VISIQPCPDVK---YGKRIHVLPIDDTVEG-----ITGNLF-EVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETD 169 (489)
T ss_dssp EEEEEECTTCC---BCSEEEEEEBGGGSSS-----CCSCHH-HHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEECCCCC---ccCEEEEcCCCccccc-----ccchhH-HHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeec
Confidence 99999983 33 23333332 2211111 111212 2232333 22 45667888877777777888888877
Q ss_pred ecCccccccccceeEcCCcEEEEEecCCCceeeecccCCccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChh
Q 007661 165 VEGQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPH 244 (594)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~ 244 (594)
+ .....+.++|.+.+....... .. ... ..+.++|++ |+|++.+++++ ++++..++.+|+
T Consensus 170 ~--------~~~~~~~~~t~~~~~~~~~~~---~~-----~~~--~~~~~~~~~--i~G~~~~~~~l-~~~i~~~l~~~~ 228 (489)
T 3hu3_A 170 P--------SPYCIVAPDTVIHCEGEPIKR---ED-----EEE--SLNEVGYDD--IGGCRKQLAQI-KEMVELPLRHPA 228 (489)
T ss_dssp S--------SSEEEECTTCEEECCSSCBCH---HH-----HHH--HHTCCCGGG--CCSCHHHHHHH-HHHTHHHHHCHH
T ss_pred C--------CCceEEcCCeEEEEccCcccc---cc-----ccc--ccCCCCHHH--cCCHHHHHHHH-HHHHHHHhhCHH
Confidence 6 446678888888875432110 00 000 114678888 99999999999 899999999999
Q ss_pred hhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcE
Q 007661 245 VTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLH 324 (594)
Q Consensus 245 ~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~ 324 (594)
++..+|..+++++|||||||||||++|+++++++ +.+++.++|+++.+.|.|+.+..++.+|+.+.... |+
T Consensus 229 ~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~--------p~ 299 (489)
T 3hu3_A 229 LFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA--------PA 299 (489)
T ss_dssp HHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTC--------SE
T ss_pred HHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-CCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcC--------Cc
Confidence 9999999999999999999999999999999997 56788999999999999999999999999998875 56
Q ss_pred EEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHH
Q 007661 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGR 404 (594)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r 404 (594)
+|||||||.++++++... .+...+++++|+..|++.....+++||++||+++.||++++|+|||+..+++++|+.++|
T Consensus 300 iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR 377 (489)
T 3hu3_A 300 IIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (489)
T ss_dssp EEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred EEEecchhhhcccccccc--chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHH
Confidence 999999999998876543 356778999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCc----ccchhhcchhHHH
Q 007661 405 LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPV----DEESIKVTMDDFL 480 (594)
Q Consensus 405 ~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~----~~~~~~vt~~df~ 480 (594)
.+||+.+++.+. +..+.++..++..+.||+++||..+|++|...++++.....+..... ......++++||.
T Consensus 378 ~~IL~~~~~~~~----l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~ 453 (489)
T 3hu3_A 378 LEILQIHTKNMK----LADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFR 453 (489)
T ss_dssp HHHHHHHTTTSC----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHH
T ss_pred HHHHHHHHhcCC----CcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHH
Confidence 999999988776 56778999999999999999999999999999998876543333221 1234579999999
Q ss_pred HHHHhcccCC----CcCCccccccccCcce
Q 007661 481 HALYEIVPAF----GASTDDLERSRLNGMV 506 (594)
Q Consensus 481 ~al~~~~ps~----~~~~~~~~~~~~~~~~ 506 (594)
.|++++.|+. ....+.+.|.+++|..
T Consensus 454 ~Al~~~~ps~~re~~~e~p~v~W~dig~~~ 483 (489)
T 3hu3_A 454 WALSQSNPSALRETVVEVPQVTWEDIGGRS 483 (489)
T ss_dssp HHHTSHHHHHHHGGGC--------------
T ss_pred HHHHhCCchhhhcccccCCCCCHHHcCCCc
Confidence 9999998874 2345677788777654
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-49 Score=419.31 Aligned_cols=286 Identities=32% Similarity=0.556 Sum_probs=250.2
Q ss_pred ceeEcCCcEEEEEecCCCceeeecccCC---ccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCC
Q 007661 176 RGIITNETYFVFEASNDSGIKIVNQREG---ANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIK 252 (594)
Q Consensus 176 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 252 (594)
...+.+++.|.+.........+.+.... ....+.+.|+++|+| |||+++++++| ++++..|+.+|++|.++|++
T Consensus 137 ~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~d--igGl~~~k~~l-~e~v~~pl~~p~~f~~~g~~ 213 (437)
T 4b4t_L 137 RSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDG--IGGLTEQIREL-REVIELPLKNPEIFQRVGIK 213 (437)
T ss_dssp TTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGG--GCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCC
T ss_pred HhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhH--hCChHHHHHHH-HHHHHHHHhCHHHHHhCCCC
Confidence 3455666777766665555555544321 122334569999999 99999999999 99999999999999999999
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccch
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 332 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid 332 (594)
+|+|||||||||||||++|+++|+++ +.+++.++++++.++|+|+++..++.+|..|...+ ||||||||+|
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~-~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~--------P~IifiDEiD 284 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI-GANFIFSPASGIVDKYIGESARIIREMFAYAKEHE--------PCIIFMDEVD 284 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSC--------SEEEEEECCC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEehhhhccccchHHHHHHHHHHHHHHhcC--------Cceeeeeccc
Confidence 99999999999999999999999998 57788999999999999999999999999999885 5699999999
Q ss_pred hhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHH
Q 007661 333 AICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIH 411 (594)
Q Consensus 333 ~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~ 411 (594)
+++++|..... ......+++++||+.||++....+++||+|||+|+.|||||+|||||+..|+|++||.++|.+||+.|
T Consensus 285 ai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~ 364 (437)
T 4b4t_L 285 AIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIH 364 (437)
T ss_dssp SSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHH
T ss_pred ccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHH
Confidence 99998865433 33456778999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 412 TNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 412 ~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
+++++ +..++|+..||+.|+||||+||.++|++|++.|+++. ...|+++||.+|++++.|..
T Consensus 365 ~~~~~----~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~-------------~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 365 TAKVK----KTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDD-------------RDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp HHTSC----BCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTT-------------CSSBCHHHHHHHHHHHHHTC
T ss_pred hcCCC----CCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------------CCCCCHHHHHHHHHHHHhcc
Confidence 99887 5678999999999999999999999999999998753 24699999999999987753
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-49 Score=417.91 Aligned_cols=285 Identities=31% Similarity=0.469 Sum_probs=248.5
Q ss_pred eeEcCCcEEEEEecCCCceeeecccCCc---cccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCC
Q 007661 177 GIITNETYFVFEASNDSGIKIVNQREGA---NSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKH 253 (594)
Q Consensus 177 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~ 253 (594)
..+.+++.|.+.......+...+.+..+ .....+.|+++|+| |||+++++++| ++++.+|+.+|++|.++|+++
T Consensus 138 ~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~d--igGl~~~k~~l-~e~v~~pl~~pe~f~~~g~~~ 214 (434)
T 4b4t_M 138 DKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSD--VGGLDKQIEEL-VEAIVLPMKRADKFKDMGIRA 214 (434)
T ss_dssp TTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGG--SCSCHHHHHHH-HHHTHHHHHCSHHHHHHCCCC
T ss_pred hHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHh--cCcHHHHHHHH-HHHHHHHHhCHHHHHhCCCCC
Confidence 3455666666665555555555433211 11223459999999 99999999999 999999999999999999999
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~ 333 (594)
|+|||||||||||||++|+++|+++ +.+++.++++++.++|+|++++.++.+|..|...+ ||||||||+|+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~a--------P~IifiDEiDa 285 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT-NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKA--------PTIIFIDELDA 285 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHC--------SEEEEEECTHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh-CCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcC--------CeEEeecchhh
Confidence 9999999999999999999999998 57788999999999999999999999999999986 56999999999
Q ss_pred hhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHH
Q 007661 334 ICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHT 412 (594)
Q Consensus 334 l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~ 412 (594)
++++|..... +.....+++.+||+.||++....+++||||||+|+.||+|++|||||++.|+|++||.++|.+||+.|+
T Consensus 286 l~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 286 IGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp HHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 9999866433 233456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 413 NKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 413 ~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
++++ +..++|+..||+.|+||||+||.++|++|++.|+++. ...|+++||.+|+.++.|+.
T Consensus 366 ~~~~----~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~-------------~~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 366 RKMT----TDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG-------------QSSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp HHSC----BCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT-------------CSSBCHHHHHHHHHSCSSSC
T ss_pred cCCC----CCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHHHhCCC
Confidence 9987 6788999999999999999999999999999998763 34689999999999998874
No 8
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-49 Score=413.78 Aligned_cols=286 Identities=31% Similarity=0.484 Sum_probs=249.2
Q ss_pred cceeEcCCcEEEEEecCCCceeeecccCCcc---ccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCC
Q 007661 175 ERGIITNETYFVFEASNDSGIKIVNQREGAN---SNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGI 251 (594)
Q Consensus 175 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~ 251 (594)
+...+.+++.|.+.....+.+.+.+.+..+. -.+-+.|+++|+| |||+++++++| ++++.+|+.+|++|.++|+
T Consensus 164 ~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~D--IgGl~~~k~~L-~e~V~~pl~~pe~f~~~Gi 240 (467)
T 4b4t_H 164 SPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSD--VGGCKDQIEKL-REVVELPLLSPERFATLGI 240 (467)
T ss_dssp CSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSS--CTTCHHHHHHH-HHHTHHHHHCHHHHHHHTC
T ss_pred CHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHH--hccHHHHHHHH-HHHHHHHhcCHHHHHHCCC
Confidence 3445667777777665555555555442221 1233469999999 99999999999 9999999999999999999
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEI 331 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEi 331 (594)
++|+|||||||||||||++|+++|+++ +.+++.++++++.++|+|++++.++.+|..|+..+ ||||||||+
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~-~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~a--------P~IIfiDEi 311 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT-DATFIRVIGSELVQKYVGEGARMVRELFEMARTKK--------ACIIFFDEI 311 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH-TCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC--------SEEEEEECC
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc-CCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcC--------CceEeeccc
Confidence 999999999999999999999999998 57788999999999999999999999999999886 569999999
Q ss_pred hhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHH
Q 007661 332 DAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (594)
Q Consensus 332 d~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~ 410 (594)
|+++++|+.... ......+++.++|..||++....+++||+|||+|+.||+|++|||||+++|+|++||.++|.+||+.
T Consensus 312 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~ 391 (467)
T 4b4t_H 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRI 391 (467)
T ss_dssp TTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHH
T ss_pred ccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHH
Confidence 999998876443 2334567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccC
Q 007661 411 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (594)
Q Consensus 411 ~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps 489 (594)
|+++++ +..++|++.||+.|+||+|+||.++|++|++.|+++. ...++++||..|++++.+.
T Consensus 392 ~l~~~~----l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~-------------~~~it~~Df~~Al~kV~~g 453 (467)
T 4b4t_H 392 HSKSMS----VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------RKVATEKDFLKAVDKVISG 453 (467)
T ss_dssp HHTTSC----BCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-------------CSSBCHHHHHHHHHHHHHH
T ss_pred HhcCCC----CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-------------CCccCHHHHHHHHHHHhcC
Confidence 999887 6678999999999999999999999999999998763 3468999999999988653
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-48 Score=408.44 Aligned_cols=283 Identities=29% Similarity=0.473 Sum_probs=246.5
Q ss_pred ceeEcCCcEEEEEecCCCceeeecccCC---ccccccccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCC
Q 007661 176 RGIITNETYFVFEASNDSGIKIVNQREG---ANSNIFRHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIK 252 (594)
Q Consensus 176 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~ 252 (594)
...+.+++.+.+.........+.+.... ....+.+.|+++|+| |||+++++++| ++++..|+.+|++|.++|++
T Consensus 128 ~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~d--igGl~~~k~~l-~e~v~~pl~~p~~~~~~g~~ 204 (428)
T 4b4t_K 128 RELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYAD--VGGLDMQKQEI-REAVELPLVQADLYEQIGID 204 (428)
T ss_dssp TTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGG--SCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCC
T ss_pred HhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHH--hccHHHHHHHH-HHHHHHHHhCHHHHHhCCCC
Confidence 3445566677666655555555543321 112233469999999 99999999999 99999999999999999999
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccch
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEID 332 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid 332 (594)
+|+|+|||||||||||++|+++|+++ +.+++.++++++.++|+|+++..++.+|..|+..+ ||||||||+|
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a--------P~IifiDEiD 275 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST-KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENA--------PSIIFIDEVD 275 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC--------SEEEEEECTH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEecchhhccccchhHHHHHHHHHHHHHcC--------CCeeechhhh
Confidence 99999999999999999999999998 57788999999999999999999999999999875 5699999999
Q ss_pred hhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecC-CCCHHHHHHHHHH
Q 007661 333 AICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEIS-LPDENGRLQILQI 410 (594)
Q Consensus 333 ~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~-~P~~~~r~~IL~~ 410 (594)
+++++|..... +.....+++++||+.|||+....+++||||||+|+.||+|++|||||+..|+|| +|+.++|.+||+.
T Consensus 276 ~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~ 355 (428)
T 4b4t_K 276 SIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGT 355 (428)
T ss_dssp HHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHH
T ss_pred hhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 99998865433 334667899999999999999999999999999999999999999999999996 8999999999999
Q ss_pred HHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 411 HTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 411 ~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
|+++++ +..++|++.||..|+||||+||.++|++|++.|+++. ...|+++||.+|+....
T Consensus 356 ~~~~~~----l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~-------------~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 356 IASKMS----LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-------------RYVILQSDLEEAYATQV 415 (428)
T ss_dssp HHHSSC----BCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-------------CSSBCHHHHHHHHHHHS
T ss_pred HhcCCC----CCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC-------------CCCCCHHHHHHHHHHhh
Confidence 999887 6788999999999999999999999999999999763 34689999999998653
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.2e-45 Score=410.03 Aligned_cols=265 Identities=35% Similarity=0.602 Sum_probs=194.3
Q ss_pred ccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc
Q 007661 210 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (594)
Q Consensus 210 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~ 289 (594)
..|+++|++ |||+++.++++ ++++..|+.+|+.|.++|+++++|+|||||||||||++|+++|+++ +.+++.++++
T Consensus 470 ~~p~v~w~d--iggl~~~k~~l-~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-~~~f~~v~~~ 545 (806)
T 3cf2_A 470 EVPQVTWED--IGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISIKGP 545 (806)
T ss_dssp BCCCCCSTT--CCSCHHHHHHH-TTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-TCEEEECCHH
T ss_pred cCCCCCHHH--hCCHHHHHHHH-HHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-CCceEEeccc
Confidence 348889998 99999999998 9999999999999999999999999999999999999999999998 5678889999
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
+++++|+|+++++++++|+.|+..+ ||||||||+|+++++|+... ++.+..++++++||.+||++....+|
T Consensus 546 ~l~s~~vGese~~vr~lF~~Ar~~~--------P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V 617 (806)
T 3cf2_A 546 ELLTMWFGESEANVREIFDKARQAA--------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp HHHTTTCSSCHHHHHHHHHHHHTTC--------SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSE
T ss_pred hhhccccchHHHHHHHHHHHHHHcC--------CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCE
Confidence 9999999999999999999999875 56999999999999987542 33457789999999999999999999
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
+||||||+|+.||++++|||||++.|++++||.++|.+||+.++++++ +..++|+..||+.|+||||+||.++|++
T Consensus 618 ~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~----~~~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp EEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC------CCC----------------CHHHHHHH
T ss_pred EEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCC----CCCCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876 6788999999999999999999999999
Q ss_pred HHHHHHHhccCcccCCC------------CcccchhhcchhHHHHHHHhcccCC
Q 007661 449 AVSFALNRQLSMDDLTK------------PVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 449 A~~~a~~r~~~~~~~~~------------~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
|++.|+++.+....... ........|+++||.+|++.++|+.
T Consensus 694 A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 694 ACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp HHHHHHHHHHC-----------------------CCC----CCTTTC-------
T ss_pred HHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 99999988664321110 0012234699999999999999985
No 11
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.9e-38 Score=319.19 Aligned_cols=263 Identities=34% Similarity=0.575 Sum_probs=213.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
|+++|+| |||+++.++++ ++.+..|+.+++.++.+++..++|++|+||||||||++++++|..+. ..++.+++.++
T Consensus 5 ~~~~~~d--i~g~~~~~~~l-~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-~~~i~i~g~~l 80 (274)
T 2x8a_A 5 PNVTWAD--IGALEDIREEL-TMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-LNFISVKGPEL 80 (274)
T ss_dssp ---------CCHHHHHHHHH-HHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT-CEEEEEETTTT
T ss_pred CCCCHHH--hCCHHHHHHHH-HHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC-CCEEEEEcHHH
Confidence 7899999 99999999988 89999999999999999999999999999999999999999999974 46788999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
.++|.|+.+..++.+|+.+.... |+++|+||+|.+++.++... .+...+++++++..|++......++++
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~~~--------p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKNSA--------PCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHTC--------SEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhcC--------CCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhcccccCCEEEE
Confidence 99999999999999999987654 56999999999987654321 223457889999999999888889999
Q ss_pred EeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHc--CCCCHHHHHHHHHHH
Q 007661 372 GMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAART--KNYSGAELEGVAKSA 449 (594)
Q Consensus 372 ~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t--~g~sg~dl~~l~~~A 449 (594)
++||+|+.||++++|||||+..|++++|+.++|.+||+.+++... ...+..++++..+|..+ +||+|+||.++|++|
T Consensus 151 a~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a 229 (274)
T 2x8a_A 151 AATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT-KPPLDADVNLEAIAGDLRCDCYTGADLSALVREA 229 (274)
T ss_dssp EEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB-TTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHH
T ss_pred eecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc-CCCCccccCHHHHHHhhccCCcCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986422 11256789999999875 599999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCCC
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAFG 491 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~~ 491 (594)
++.|+++.+..... ........|+++||.+|++.++|+..
T Consensus 230 ~~~a~~~~~~~~~~--~~~~~~~~i~~~df~~al~~~~ps~~ 269 (274)
T 2x8a_A 230 SICALRQEMARQKS--GNEKGELKVSHKHFEEAFKKVRSSIS 269 (274)
T ss_dssp HHHHHHHHC-------------CCBCHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHhhccc--cccccCCeecHHHHHHHHHHhcCCCC
Confidence 99999876532211 11123457999999999999999863
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.5e-37 Score=316.05 Aligned_cols=264 Identities=36% Similarity=0.610 Sum_probs=227.8
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.|+++|++ |+|++..++++ ++++..++.+|+.+..+|+.+++++|||||||||||++|+++|+++. ..++.+++++
T Consensus 9 ~~~~~~~d--i~G~~~~~~~l-~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-~~~i~v~~~~ 84 (301)
T 3cf0_A 9 VPQVTWED--IGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGPE 84 (301)
T ss_dssp CCCCCGGG--SCSCHHHHHHH-HHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-CEEEEECHHH
T ss_pred CCCCCHHH--hCCHHHHHHHH-HHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-CCEEEEEhHH
Confidence 37889999 99999999998 89999999999999999999999999999999999999999999984 6778899999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
+.++|.|+++..++.+|+.+.... |++|||||+|.+++.++... ...+..++++++|+..|+++....+++
T Consensus 85 l~~~~~g~~~~~~~~~f~~a~~~~--------p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~ 156 (301)
T 3cf0_A 85 LLTMWFGESEANVREIFDKARQAA--------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 156 (301)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTC--------SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEE
T ss_pred HHhhhcCchHHHHHHHHHHHHhcC--------CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEE
Confidence 999999999999999999998764 56999999999998765422 223455678899999999988878999
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
||++||+++.+|++++|+|||+..+++++|+.++|.+||+.++++.. +..++++..++..++||+|+||.++|++|
T Consensus 157 vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~----~~~~~~~~~la~~~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 157 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VAKDVDLEFLAKMTNGFSGADLTEICQRA 232 (301)
T ss_dssp EEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC----BCSSCCHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred EEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC----CCccchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765 45778999999999999999999999999
Q ss_pred HHHHHHhccCcccCCCC--------c----ccchhhcchhHHHHHHHhcccCC
Q 007661 450 VSFALNRQLSMDDLTKP--------V----DEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~--------~----~~~~~~vt~~df~~al~~~~ps~ 490 (594)
.+.|..+.+........ . ......|+++||..|++++.|+.
T Consensus 233 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 233 CKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp HHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCC
Confidence 99998776532111000 0 01124799999999999999875
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.9e-37 Score=315.69 Aligned_cols=260 Identities=27% Similarity=0.483 Sum_probs=224.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
|+++|++ |||++..++.+ ++++..|+.+|+++.. +..+++++|||||||||||++|+++|+++.+..++.++++++
T Consensus 7 ~~~~~~d--i~G~~~~k~~l-~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 7 PNVKWSD--VAGLEGAKEAL-KEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp CCCCGGG--SCSCHHHHHHH-HHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred CCCCHHH--hcCHHHHHHHH-HHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 7889999 99999999988 8999999999999885 467889999999999999999999999986677888999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc-cCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES-LNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~-~~~v~v 370 (594)
.++|.|+++..++.+|+.+.... |+||||||+|.++++++... .+...+++++|+..|+++.. ..+++|
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~--------~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENK--------PSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTS--------SEEEEEETTTGGGCCSSSCC--TTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhcC--------CcEEEeecHHHhcccccccc--chHHHHHHHHHHHHHhcccccCCCEEE
Confidence 99999999999999999998764 56999999999998876543 35678899999999999863 578999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||+++.+|++++| ||+..+++++|+.++|.+||+.+++.... ...+.++..|++.|+||+|+||..+|++|.
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~~~A~ 227 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN---SLTEADFRELGRKTDGYSGADISIIVRDAL 227 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB---CCCHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999987652 236789999999999999999999999999
Q ss_pred HHHHHhccCcccCC--------------------------C-------Cccc---chhhcchhHHHHHHHhcccCC
Q 007661 451 SFALNRQLSMDDLT--------------------------K-------PVDE---ESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 451 ~~a~~r~~~~~~~~--------------------------~-------~~~~---~~~~vt~~df~~al~~~~ps~ 490 (594)
+.++++........ . .... ....|+++||..|+++++|+.
T Consensus 228 ~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~ 303 (322)
T 1xwi_A 228 MQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTV 303 (322)
T ss_dssp THHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCC
Confidence 99998754221000 0 0001 124799999999999999985
No 14
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=4.5e-35 Score=303.24 Aligned_cols=260 Identities=28% Similarity=0.472 Sum_probs=220.1
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.|+++|++ |+|++.+++++ ++++..++.+|+++.. +..+++++|||||||||||++|+++|+++ +.+++.+++++
T Consensus 12 ~~~~~~~d--i~G~~~~~~~l-~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~v~~~~ 86 (322)
T 3eie_A 12 KPNVKWED--VAGLEGAKEAL-KEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSD 86 (322)
T ss_dssp CCCCCGGG--SCSCHHHHHHH-HHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHH-TCEEEEEEHHH
T ss_pred CCCCCHHH--hcChHHHHHHH-HHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHH-CCCEEEEchHH
Confidence 37889999 99999999999 8999999999999887 56788999999999999999999999998 46788899999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc-ccCcEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-SLNNVL 369 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~-~~~~v~ 369 (594)
+.++|.|+.+..++.+|+.+.... |+||||||+|.++++++... .+..++++++++..|+++. ...+++
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~--------~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENK--------PSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTS--------SEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred HhhcccchHHHHHHHHHHHHHhcC--------CeEEEechhhhhhccCCCCc--chHHHHHHHHHHHHhccccccCCceE
Confidence 999999999999999999998875 56999999999998775432 3457788999999999885 456899
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
||++||+++.||++++| ||+..+++++|+.++|.+||+.++++... ...+.++..|+..++||+|+||..+|++|
T Consensus 157 vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l~~~a 231 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVVVKDA 231 (322)
T ss_dssp EEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999887542 23677899999999999999999999999
Q ss_pred HHHHHHhccCccc---CCC---------------------------CcccchhhcchhHHHHHHHhcccCC
Q 007661 450 VSFALNRQLSMDD---LTK---------------------------PVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 450 ~~~a~~r~~~~~~---~~~---------------------------~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
.+.++++...... ... ........|+++||.+|++.++|+.
T Consensus 232 ~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 232 LMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp TTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 9999887543210 000 0001125699999999999999986
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.2e-34 Score=303.67 Aligned_cols=259 Identities=29% Similarity=0.485 Sum_probs=214.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
++++|++ |+|++.+++.+ ++++..++.+|+++.. +..+++++|||||||||||++|+++|+++ +.+++.++++++
T Consensus 46 ~~~~~~d--i~G~~~~~~~l-~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~-~~~~~~v~~~~l 120 (355)
T 2qp9_X 46 PNVKWED--VAGLEGAKEAL-KEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEA-NSTFFSVSSSDL 120 (355)
T ss_dssp -CCCGGG--SCCGGGHHHHH-HHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHH-TCEEEEEEHHHH
T ss_pred CCCCHHH--hCCHHHHHHHH-HHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCEEEeeHHHH
Confidence 7889999 99999999998 8899999999999887 67888999999999999999999999998 467888999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc-cCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES-LNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~-~~~v~v 370 (594)
.++|.|+.+..++.+|..+.... |+||||||+|.+.+.++... .+...+++++|+..|+++.. ..+++|
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~--------~~vl~iDEid~l~~~r~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENK--------PSIIFIDQVDALTGTRGEGE--SEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTS--------SEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred hhhhcchHHHHHHHHHHHHHHcC--------CeEEEEechHhhcccCCCCc--chHHHHHHHHHHHHhhcccccCCCeEE
Confidence 99999999999999999998764 56999999999998775432 35678889999999998754 568999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||+++.||++++| ||+..+++++|+.++|.+||+.+++.... ...+.++..|+..++||+|+||.++|++|.
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~~~~l~~la~~t~G~sg~dl~~l~~~A~ 265 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS---VLTKEDYRTLGAMTEGYSGSDIAVVVKDAL 265 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999987642 236788999999999999999999999999
Q ss_pred HHHHHhccCccc---CC---------------C---------Cc---ccchhhcchhHHHHHHHhcccCC
Q 007661 451 SFALNRQLSMDD---LT---------------K---------PV---DEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 451 ~~a~~r~~~~~~---~~---------------~---------~~---~~~~~~vt~~df~~al~~~~ps~ 490 (594)
+.|+++...... .. . .. ......|+++||..|+.+++|+.
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 266 MQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp HHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 999987432100 00 0 00 01234699999999999999985
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=7.6e-34 Score=305.74 Aligned_cols=247 Identities=36% Similarity=0.615 Sum_probs=213.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+.++|++ |+|++..++++ ++.+.. +.+|+.+.++|.+.|+|+||+||||||||++|+++++++ +.+++.++++++
T Consensus 11 ~~~~f~d--i~G~~~~~~~l-~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~-~~~f~~is~~~~ 85 (476)
T 2ce7_A 11 KRVTFKD--VGGAEEAIEEL-KEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA-NVPFFHISGSDF 85 (476)
T ss_dssp CCCCGGG--CCSCHHHHHHH-HHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGT
T ss_pred CCCCHHH--hCCcHHHHHHH-HHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-CCCeeeCCHHHH
Confidence 5788998 99999999998 666554 567889999999999999999999999999999999998 467888999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
...|.|..+..++.+|+.+.... |+||||||+|.+.++++... +......+++++|+..||++....+++|
T Consensus 86 ~~~~~g~~~~~~r~lf~~A~~~~--------p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viV 157 (476)
T 2ce7_A 86 VELFVGVGAARVRDLFAQAKAHA--------PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIV 157 (476)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHTC--------SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEE
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--------CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEE
Confidence 99999999999999999998864 66999999999998775421 2234456789999999998887789999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||+++.+|++++|+|||+..+.+++|+.++|.+||+.++++.+ +.+++++..++..+.||+|+||.++|++|.
T Consensus 158 IaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~----l~~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 158 MAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP----LAEDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC----CcchhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765 567888999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
..|.++. ...|+.+||..++..+.+
T Consensus 234 l~A~~~~-------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 234 LLAAREG-------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHTT-------------CSSBCHHHHHHHHHHHC-
T ss_pred HHHHHcC-------------CCeecHHHHHHHHHHHhc
Confidence 9887642 235888888888887754
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=2.8e-34 Score=309.60 Aligned_cols=261 Identities=27% Similarity=0.475 Sum_probs=213.8
Q ss_pred cCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 211 HKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 211 ~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
.|+++|++ |+|++..++.+ ++++..|+.+|++|.. +..+++++|||||||||||++|+++|+++.+..++.+++++
T Consensus 128 ~~~~~~~d--i~G~~~~k~~l-~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 128 RPNVKWSD--VAGLEGAKEAL-KEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp CCCCCGGG--SCSCHHHHHHH-HHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred CCCCCHHH--hcCHHHHHHHH-HHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 47899999 99999999988 8889899999998875 35778999999999999999999999998667788899999
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc-cCcEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES-LNNVL 369 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~-~~~v~ 369 (594)
+.++|.|+++..++.+|..+.... |+||||||+|.+++++.... .+...+++++|+..|+++.. ..+++
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~--------~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENK--------PSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp --------CCCTHHHHHHHHHHSC--------SEEEEESCTTTTCCCSSCCC--CGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred HHhhhcchHHHHHHHHHHHHHHcC--------CeEEEEechHhhccCCCCcc--ccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 999999999999999999998764 56999999999998776542 35678899999999999863 57899
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
||++||+++.||++++| ||+..+++++|+.++|.+||+.+++.... ..++.++..|+..+.||+|+||..+|++|
T Consensus 274 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~~~a 348 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQN---SLTEADFQELGRKTDGYSGADISIIVRDA 348 (444)
T ss_dssp EEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCE---ECCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999987642 13678999999999999999999999999
Q ss_pred HHHHHHhccCcccCC---------------------------------CCc---ccchhhcchhHHHHHHHhcccCC
Q 007661 450 VSFALNRQLSMDDLT---------------------------------KPV---DEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~---------------------------------~~~---~~~~~~vt~~df~~al~~~~ps~ 490 (594)
.+.++++........ ... ......|+++||..|+..++|+.
T Consensus 349 ~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~ 425 (444)
T 2zan_A 349 LMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTV 425 (444)
T ss_dssp HTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCC
Confidence 999998754211000 000 01124799999999999999985
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.6e-33 Score=281.21 Aligned_cols=249 Identities=41% Similarity=0.639 Sum_probs=221.6
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
|+++|++ |+|++++++++ ++.+..++.+++.+.++|+.+++++||+||||||||++|+++++.+ +..++.+++.++
T Consensus 12 ~~~~~~~--i~G~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-~~~~~~v~~~~~ 87 (285)
T 3h4m_A 12 PNVRYED--IGGLEKQMQEI-REVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-NATFIRVVGSEL 87 (285)
T ss_dssp CCCCGGG--SCSCHHHHHHH-HHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-TCEEEEEEGGGG
T ss_pred CCCCHHH--hcCHHHHHHHH-HHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-CCCEEEEehHHH
Confidence 7888999 99999999999 8899999999999999999999999999999999999999999998 467788999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
...+.|+.+..++.+|..+.... |+||||||+|.+++++..... ........+.+++..++++....+++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~--------~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKA--------PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTC--------SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred HHhccchHHHHHHHHHHHHHHcC--------CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 99999999999999999998875 569999999999987765322 223455677888888888888889999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||.++.+|++++|++||+..++++.|+.++|.+||+.+++... +..+.++..++..+.|++++||..+|+.|.
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~ 235 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN----LAEDVNLEEIAKMTEGCVGAELKAICTEAG 235 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC----BCTTCCHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC----CCCcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988765 556788999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccC
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps 489 (594)
..|..+. ...|+.+||.+|+.++.+.
T Consensus 236 ~~a~~~~-------------~~~I~~~d~~~al~~~~~~ 261 (285)
T 3h4m_A 236 MNAIREL-------------RDYVTMDDFRKAVEKIMEK 261 (285)
T ss_dssp HHHHHTT-------------CSSBCHHHHHHHHHHHHHH
T ss_pred HHHHHhc-------------cCcCCHHHHHHHHHHHHhc
Confidence 9998753 2469999999999987543
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.1e-32 Score=275.83 Aligned_cols=246 Identities=35% Similarity=0.572 Sum_probs=209.8
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+..+|++ |+|++..++++ ++.+.. +.+++.+.++|.+.++++||+||||||||++|+++++.+. .+++.++++++
T Consensus 7 ~~~~~~~--i~G~~~~~~~l-~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-~~~~~i~~~~~ 81 (257)
T 1lv7_A 7 IKTTFAD--VAGCDEAKEEV-AELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-VPFFTISGSDF 81 (257)
T ss_dssp SCCCGGG--SCSCHHHHHHT-HHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-CCEEEECSCSS
T ss_pred CCCCHHH--hcCcHHHHHHH-HHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-CCEEEEeHHHH
Confidence 6778998 99999999998 666554 6778888999999999999999999999999999999984 56788999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
...+.|+.+..++.+|+.+.... |+++||||+|.+.+.++.... +.....+.+++++..++++....+++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~--------~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 153 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAA--------PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 153 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTC--------SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEE
T ss_pred HHHhhhhhHHHHHHHHHHHHHcC--------CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEE
Confidence 99999999999999999997654 569999999999887654321 223445788999999999888889999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
|++||+++.+|++++|++||+..+++++|+.++|.+|++.++++++ +.++.++..++..+.||+++||.++|++|.
T Consensus 154 I~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~----l~~~~~~~~la~~~~G~~~~dl~~l~~~a~ 229 (257)
T 1lv7_A 154 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP----LAPDIDAAIIARGTPGFSGADLANLVNEAA 229 (257)
T ss_dssp EEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC----CCccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988765 567788999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
..|..+. ...|+.+||..|++++.
T Consensus 230 ~~a~~~~-------------~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 230 LFAARGN-------------KRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHTT-------------CSSBCHHHHHHHHHHHT
T ss_pred HHHHHhC-------------CCcccHHHHHHHHHHHh
Confidence 9988652 24699999999998864
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=3.6e-32 Score=272.47 Aligned_cols=250 Identities=30% Similarity=0.466 Sum_probs=192.4
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
|+++|++ |+|++..++++ ++.+.. +.+|+.+..+|..+++++||+||||||||++|+++++++ +.+++.++++++
T Consensus 1 ~~~~~~~--i~G~~~~~~~l-~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~-~~~~~~~~~~~~ 75 (262)
T 2qz4_A 1 MGVSFKD--VAGMHEAKLEV-REFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA-QVPFLAMAGAEF 75 (262)
T ss_dssp CCCCTTS--SCSCHHHHHHH-HHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH-TCCEEEEETTTT
T ss_pred CCCCHHH--hCCHHHHHHHH-HHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEechHHH
Confidence 4577888 99999999988 666654 677888999999999999999999999999999999998 467888999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCC--CCchHHHHHHHHHHhhcCccccCcEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD--GTGVHDSIVNQLLTKIDGVESLNNVL 369 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~--~~~~~~~~v~~Ll~~ld~~~~~~~v~ 369 (594)
.+.+.+..+..++.+|+.+.... |+||||||+|.++.++..... ........+.+++..+++.....+++
T Consensus 76 ~~~~~~~~~~~~~~~~~~a~~~~--------~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 147 (262)
T 2qz4_A 76 VEVIGGLGAARVRSLFKEARARA--------PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVI 147 (262)
T ss_dssp SSSSTTHHHHHHHHHHHHHHHTC--------SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEE
T ss_pred HhhccChhHHHHHHHHHHHHhcC--------CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEE
Confidence 99999999999999999998764 569999999999876643221 12234567888999999887778999
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
+|++||.++.+|++++|+|||+..++++.|+.++|.+||+.+++..... ...+.....++..+.||+++||..+|++|
T Consensus 148 vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~~l~~~a 225 (262)
T 2qz4_A 148 VLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIANICNEA 225 (262)
T ss_dssp EEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876521 12233458899999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccC
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPA 489 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps 489 (594)
...|..+ ....|+.+||..|+.++.+.
T Consensus 226 ~~~a~~~-------------~~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 226 ALHAARE-------------GHTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp HTC---------------------CCBCCHHHHHHHHHHH
T ss_pred HHHHHHc-------------CCCCCCHHHHHHHHHHhccC
Confidence 9877653 23568999999999988654
No 21
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=4.1e-32 Score=293.92 Aligned_cols=247 Identities=34% Similarity=0.558 Sum_probs=211.7
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+.++|++ |+|++..+.++ ++.... +.+|..+.+++.+.++|+||+||||||||++|++++.++. .+++.++++++
T Consensus 26 ~~~~f~d--v~G~~~~k~~l-~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~ 100 (499)
T 2dhr_A 26 PKVTFKD--VAGAEEAKEEL-KEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF 100 (499)
T ss_dssp CCCCTTS--SCSCHHHHHHH-HHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGG
T ss_pred CCCCHHH--cCCcHHHHHHH-HHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHH
Confidence 5778998 99999999988 665543 5678889999999999999999999999999999999984 67888999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
...+.|.....++.+|+.+.... |+++||||+|.+..+++... .......+.+++|+..|++......+++
T Consensus 101 ~~~~~g~~~~~v~~lfq~a~~~~--------p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viv 172 (499)
T 2dhr_A 101 VEMFVGVGAARVRDLFETAKRHA--------PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 172 (499)
T ss_dssp TSSCTTHHHHHHHHHTTTSSSSS--------SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEE
T ss_pred HHhhhhhHHHHHHHHHHHHHhcC--------CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEE
Confidence 99999999999999999876543 56999999999987765321 1234456788999999999888788999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
+++||+|+.||++++|+|||+..|++++|+.++|.+||+.+++... +.+++++..+|..+.||+|+||+++|++|+
T Consensus 173 iAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~----l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa 248 (499)
T 2dhr_A 173 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP----LAEDVDLALLAKRTPGFVGADLENLLNEAA 248 (499)
T ss_dssp EECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC----CCCSSTTHHHHTTSCSCCHHHHHHHHHHHH
T ss_pred EEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC----CChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887654 667889999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
..|.++. ...|+++||..++..+.+
T Consensus 249 ~~A~~~~-------------~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 249 LLAAREG-------------RRKITMKDLEEAADRVMM 273 (499)
T ss_dssp HHHTTTC-------------CSSCCSHHHHHHHHHHTT
T ss_pred HHHHHhC-------------CCccCHHHHHHHHHHHhc
Confidence 8886532 235777888888777654
No 22
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.98 E-value=5.8e-31 Score=262.99 Aligned_cols=242 Identities=35% Similarity=0.571 Sum_probs=204.3
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
|.++|++ |+|++..+.++ +.+... ..++..+..+++..++|++|+||||||||++++++++.+. ..++.+++.++
T Consensus 11 ~~~~~~~--i~g~~~~~~~l-~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~~~ 85 (254)
T 1ixz_A 11 PKVTFKD--VAGAEEAKEEL-KEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF 85 (254)
T ss_dssp CSCCGGG--CCSCHHHHHHH-HHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred CCCCHHH--hCCcHHHHHHH-HHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHHHH
Confidence 7889999 99999998888 665543 4567888999999999999999999999999999999985 66788899999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCC-CCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGST-RDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~-~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
...+.+.....++.+|+.+.... |+++++||+|.+...+... ........+.+++++..|++......+++
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~--------~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHA--------PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSS--------SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred HHHHhhHHHHHHHHHHHHHHhcC--------CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 88888888889999999987543 5699999999998765431 11223456788999999999887778999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
+++||+|+.+|++++|++||+..++++.|+.++|.+||+.+++.+. +..++++..++..+.||+|+||+++|++|.
T Consensus 158 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~----~~~~~~~~~la~~~~G~~~~dl~~~~~~a~ 233 (254)
T 1ixz_A 158 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP----LAEDVDLALLAKRTPGFVGADLENLLNEAA 233 (254)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887654 567888999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHH
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHAL 483 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al 483 (594)
..|..+. ...|+.+||.+++
T Consensus 234 ~~a~~~~-------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 234 LLAAREG-------------RRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHTT-------------CSSBCHHHHHHHT
T ss_pred HHHHHhc-------------CCCcCHHHHHHHh
Confidence 9887642 2358999998875
No 23
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.3e-30 Score=271.61 Aligned_cols=258 Identities=29% Similarity=0.453 Sum_probs=211.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+..+|++ |+|++.+++++ ++++..++.+|+++..++ .+++++||+||||||||++|+++|+++ +..++.++++++
T Consensus 79 ~~~~~~~--i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~-~~~~~~i~~~~l 153 (357)
T 3d8b_A 79 PPVNWED--IAGVEFAKATI-KEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQS-GATFFSISASSL 153 (357)
T ss_dssp CCCCGGG--SCSCHHHHHHH-HHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHT-TCEEEEEEGGGG
T ss_pred CCCCHHH--hCChHHHHHHH-HHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHc-CCeEEEEehHHh
Confidence 6788998 99999999998 888888888888887764 678999999999999999999999998 467888999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc--cCcEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES--LNNVL 369 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~--~~~v~ 369 (594)
..+|.|+.+..++.+|..+.... |+||||||+|.+++++.... .....+++++|+..+++... ..+++
T Consensus 154 ~~~~~g~~~~~~~~~~~~a~~~~--------~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 154 TSKWVGEGEKMVRALFAVARCQQ--------PAVIFIDEIDSLLSQRGDGE--HESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp CCSSTTHHHHHHHHHHHHHHHTC--------SEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred hccccchHHHHHHHHHHHHHhcC--------CeEEEEeCchhhhccCCCCc--chHHHHHHHHHHHHHhcccccCCCCEE
Confidence 99999999999999999988764 56999999999998765432 34567888999999998753 45899
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
||++||+++.++++++| ||+..+++++|+.++|.+|++.+++.... ...+.++..++..+.||+++||..+|+.|
T Consensus 224 vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp EEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999876532 23566899999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
...++++.... ........+...|+.+||..|+.++.|+.
T Consensus 299 ~~~~ir~l~~~-~~~~~~~~~~~~i~~~d~~~al~~~~ps~ 338 (357)
T 3d8b_A 299 SLGPIRSLQTA-DIATITPDQVRPIAYIDFENAFRTVRPSV 338 (357)
T ss_dssp HTHHHHHCCC-----------CCCBCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhhhh-hhccccccccCCcCHHHHHHHHHhcCCCC
Confidence 99888753211 11111112345799999999999999875
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=1e-33 Score=325.31 Aligned_cols=265 Identities=35% Similarity=0.599 Sum_probs=215.3
Q ss_pred ccCccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc
Q 007661 210 RHKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (594)
Q Consensus 210 ~~~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~ 289 (594)
..+.++|++ ++|+++.++++ .+++..++.+++.+.++++.+++++||+||||||||++|+++|+.+. ..++.++++
T Consensus 470 ~~~~v~~~d--i~gl~~vk~~l-~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~-~~~i~v~~~ 545 (806)
T 1ypw_A 470 EVPQVTWED--IGGLEDVKREL-QELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-ANFISIKGP 545 (806)
T ss_dssp CCCCCSSCS--SSCCCCHHHHH-HTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT-CCCCCCCCS
T ss_pred cCccccccc--cccchhhhhhH-HHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC-CCEEEEech
Confidence 347788998 99999999988 88999999999999999999999999999999999999999999984 567789999
Q ss_pred hhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCC-CCchHHHHHHHHHHhhcCccccCcE
Q 007661 290 EVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD-GTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 290 ~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
++.++|.|+++..++.+|+.+.... |+||||||+|.+++.++.... ......+++++||..||++....++
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~~--------p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v 617 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQAA--------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 617 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHHC--------SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CC
T ss_pred HhhhhhcCccHHHHHHHHHHHHhcC--------CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCe
Confidence 9999999999999999999999875 459999999999988765322 2345678999999999999888899
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
+||+|||+++.||++++|||||+..|+++.|+.++|.+||+.++++.+ +..++++..|++.+.||+|+||.++|++
T Consensus 618 ~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~----~~~~~~l~~la~~t~g~sgadi~~l~~~ 693 (806)
T 1ypw_A 618 FIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP----VAKDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp BCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC--------CCCCSCSCGGGSSSCCHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC----CCcccCHHHHHHhccccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988765 5678899999999999999999999999
Q ss_pred HHHHHHHhccCcccCCC------------CcccchhhcchhHHHHHHHhcccCC
Q 007661 449 AVSFALNRQLSMDDLTK------------PVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 449 A~~~a~~r~~~~~~~~~------------~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
|...|+++.+....... ........|+++||.++++..+|+.
T Consensus 694 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~sv 747 (806)
T 1ypw_A 694 ACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp HHHHHHSCC------------------------CCTTTTTTSSCCCCCC-----
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 99999987654211000 0011124688899988888777764
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=2.3e-30 Score=264.54 Aligned_cols=258 Identities=29% Similarity=0.400 Sum_probs=210.4
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
++.+|++ |+|++..++.+ ++++..+..+|+++..++ .+++++||+||||||||++|+++++++ +.+++.++++++
T Consensus 16 ~~~~~~~--i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~-~~~~~~i~~~~l 90 (297)
T 3b9p_A 16 AKVEWTD--IAGQDVAKQAL-QEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATEC-SATFLNISAASL 90 (297)
T ss_dssp SCCCGGG--SCCCHHHHHHH-HHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHT-TCEEEEEESTTT
T ss_pred CCCCHHH--hCChHHHHHHH-HHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEEeeHHHH
Confidence 6788998 99999999998 888888888999888765 567899999999999999999999998 466788999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcccc---CcE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL---NNV 368 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~---~~v 368 (594)
...+.|+.+..++.+|..+.... |++|||||+|.++..+.... .+....+.++|+..+++.... .++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~--------~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQ--------PSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTC--------SEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CE
T ss_pred hhcccchHHHHHHHHHHHHHHcC--------CcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcE
Confidence 99999999999999999988764 56999999999998765432 234567788899888876543 579
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
+||++||+++.++++++| ||+..+++++|+.++|.+|++.+++.... ..++.++..++..+.||+++||..+|++
T Consensus 161 ~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l~~~ 235 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTALAKD 235 (297)
T ss_dssp EEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999999876542 2345678999999999999999999999
Q ss_pred HHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 449 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 449 A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
|...+.++...... ..........|+.+||..|+..+.|+.
T Consensus 236 a~~~a~r~~~~~~~-~~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 236 AALEPIRELNVEQV-KCLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp HTTHHHHTCC---------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred HHHHHHHHHhhhhc-ccccccccCCcCHHHHHHHHHHcCCCC
Confidence 99998876432110 000112235799999999999998874
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=1.5e-29 Score=256.31 Aligned_cols=242 Identities=35% Similarity=0.569 Sum_probs=203.8
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
|.++|++ |+|++..++++ +.+... ...+..+..+++..++|++|+||||||||+++++++..+. ..++.+++.++
T Consensus 35 ~~~~~~~--i~g~~~~~~~l-~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFKD--VAGAEEAKEEL-KEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDF 109 (278)
T ss_dssp CCCCGGG--SSSCHHHHHHH-HHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHHHH
T ss_pred CCCCHHH--hCChHHHHHHH-HHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-CCEEEecHHHH
Confidence 7788998 99999998888 555443 4567888999999999999999999999999999999985 66788899998
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC-CCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR-DGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~-~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
...+.+.....+..+|+.+.... |+++++||+|.+...+.... .........+++++..+++......+++
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~~--------~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~ 181 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRHA--------PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 181 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTSC--------SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEE
T ss_pred HHHHhhHHHHHHHHHHHHHHhcC--------CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 88888888889999999987543 56999999999986654311 1123456778899999998877778999
Q ss_pred EEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Q 007661 371 IGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAV 450 (594)
Q Consensus 371 I~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~ 450 (594)
+++||+|+.+|++++|++||+..++++.|+.++|.+||+.+++... +..++++..++..+.||+++||+++|++|.
T Consensus 182 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~----~~~~~~~~~la~~~~G~~~~dl~~l~~~a~ 257 (278)
T 1iy2_A 182 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP----LAEDVDLALLAKRTPGFVGADLENLLNEAA 257 (278)
T ss_dssp EEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC----BCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred EEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887654 567788999999999999999999999999
Q ss_pred HHHHHhccCcccCCCCcccchhhcchhHHHHHH
Q 007661 451 SFALNRQLSMDDLTKPVDEESIKVTMDDFLHAL 483 (594)
Q Consensus 451 ~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al 483 (594)
..|..+. ...|+.+||.+|+
T Consensus 258 ~~a~~~~-------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 258 LLAAREG-------------RRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHTT-------------CCSBCHHHHHHHT
T ss_pred HHHHHhC-------------CCCcCHHHHHHHh
Confidence 8887542 2358999998875
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=7.8e-32 Score=271.33 Aligned_cols=249 Identities=35% Similarity=0.534 Sum_probs=205.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+.++|++ |+|++..++++ ++++.. +.+|+.+.++|.+.++++||+||||||||++|+++++++. .+++.+++.++
T Consensus 6 ~~~~~~~--i~G~~~~~~~l-~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-~~~~~v~~~~~ 80 (268)
T 2r62_A 6 PNVRFKD--MAGNEEAKEEV-VEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH-VPFFSMGGSSF 80 (268)
T ss_dssp CCCCSTT--SSSCTTTHHHH-HHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT-CCCCCCCSCTT
T ss_pred CCCCHHH--hCCcHHHHHHH-HHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC-CCEEEechHHH
Confidence 6778998 99999999988 666554 6789999999999999999999999999999999999984 56778899999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCC--CCCchHHHHHHHHHHhhcCcccc-CcE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTR--DGTGVHDSIVNQLLTKIDGVESL-NNV 368 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~--~~~~~~~~~v~~Ll~~ld~~~~~-~~v 368 (594)
...+.|..+..++.+|+.+.... |+||||||+|.+.+++.... .........+++|+..+++.... .++
T Consensus 81 ~~~~~~~~~~~~~~~~~~a~~~~--------~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 152 (268)
T 2r62_A 81 IEMFVGLGASRVRDLFETAKKQA--------PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPV 152 (268)
T ss_dssp TTSCSSSCSSSSSTTHHHHHHSC--------SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCC
T ss_pred HHhhcchHHHHHHHHHHHHHhcC--------CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCE
Confidence 99998888888889999988754 45999999999987653211 11122334667788888876543 459
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
+||++||.++.+|++++|++||+..++++.|+.++|.+||+.+++.+. +..+.++..++..+.||+|+||.++|+.
T Consensus 153 ~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~----~~~~~~~~~la~~~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 153 IVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK----LANDVNLQEVAKLTAGLAGADLANIINE 228 (268)
T ss_dssp EEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC----CCSSCCTTTTTSSSCSSCHHHHHHHHHH
T ss_pred EEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC----CCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887664 4567788999999999999999999999
Q ss_pred HHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 449 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 449 A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
|...|..+ ....|+.+|+..++.++.|..
T Consensus 229 a~~~a~~~-------------~~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 229 AALLAGRN-------------NQKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp HHHTTSSS-------------CCCSCCHHHHHTSCTTCCCCC
T ss_pred HHHHHHHh-------------ccCCcCHHHHHHHHHHHhhcc
Confidence 99877542 224689999999998887764
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=3e-29 Score=266.27 Aligned_cols=258 Identities=29% Similarity=0.437 Sum_probs=203.9
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+.++|++ |+|++.+++.+ ++.+..+..+++++..++ .+++++|||||||||||++|+++|+++ +.+++.+++.++
T Consensus 110 ~~~~~~~--iiG~~~~~~~l-~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~-~~~~~~v~~~~l 184 (389)
T 3vfd_A 110 TAVKFDD--IAGQDLAKQAL-QEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAES-NATFFNISAASL 184 (389)
T ss_dssp CCCCGGG--SCSCHHHHHHH-HHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHT-TCEEEEECSCCC
T ss_pred CCCChHH--hCCHHHHHHHH-HHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhh-cCcEEEeeHHHh
Confidence 6778998 99999999998 888888888899888776 557899999999999999999999997 467889999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc--cCcEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES--LNNVL 369 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~--~~~v~ 369 (594)
.+.|.|+.+..++.+|+.+.... |+||||||||.++..+.... .....++++.|+..+++... ..+++
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~--------~~il~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQ--------PSIIFIDQVDSLLCERREGE--HDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -------CHHHHHHHHHHHHHSS--------SEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred hccccchHHHHHHHHHHHHHhcC--------CeEEEEECchhhcccCCCcc--chHHHHHHHHHHHHhhcccccCCCCEE
Confidence 99999999999999999998865 45999999999987664432 24567888899999987754 45799
Q ss_pred EEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHH
Q 007661 370 LIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSA 449 (594)
Q Consensus 370 vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A 449 (594)
||++||+++.+|++++| ||...++++.|+.++|.+||+.++..... ...+.++..|+..+.||++++|..+|+.|
T Consensus 255 vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTALAKDA 329 (389)
T ss_dssp EEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred EEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999988876432 23456889999999999999999999999
Q ss_pred HHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcccCC
Q 007661 450 VSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVPAF 490 (594)
Q Consensus 450 ~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ps~ 490 (594)
...++++..... .......+...|+.+||..++..+.|+.
T Consensus 330 ~~~~~rel~~~~-~~~~~~~~~~~i~~~d~~~al~~~~~s~ 369 (389)
T 3vfd_A 330 ALGPIRELKPEQ-VKNMSASEMRNIRLSDFTESLKKIKRSV 369 (389)
T ss_dssp TTHHHHTSCCC----CCSSSCCCCCCHHHHHHHHHHCCCSS
T ss_pred HHHHHHhhhhhh-hhccchhhcCCcCHHHHHHHHHHcCCCC
Confidence 998887643211 1111123345789999999999988764
No 29
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=99.96 E-value=4.8e-28 Score=232.65 Aligned_cols=190 Identities=23% Similarity=0.418 Sum_probs=161.6
Q ss_pred CCCCCCceeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEE-e--CCcEEEEEeeCCCCCCCceeeCHhhhhc
Q 007661 6 GSQSSGVTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASV-A--GDSFVLSLASHPSVNKGQIALNSVQRRH 82 (594)
Q Consensus 6 ~~~~~~~~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v-~--g~~~v~~~~~~~~~~~~~i~~~~~~r~~ 82 (594)
||+.|-.+.|+|++||++++++||||||||+||+. ..|+.+ . ++.|||++.+++++++|+|++|..||+|
T Consensus 1 ~~~~ma~~~l~v~~~P~~~la~TN~~~vsp~Df~~-------~~~v~v~~~~~~~fVft~~~~~~i~~G~Igls~~QR~w 73 (211)
T 1qcs_A 1 GSHNMAGRSMQAARCPTDELSLSNCAVVSEKDYQS-------GQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRKW 73 (211)
T ss_dssp ---CCSCEEEEEEECSCHHHHHHTCEEECTTTCCT-------TCEEEEEEETTEEEEEEEEECTTSCTTEEEECHHHHHH
T ss_pred CCCcccCceEEEecCCChhhhhcceEEECHHHcCC-------CceEEEEecCCCeEEEEEecCCCCCCCEeecCHHHHhh
Confidence 78888888999999999999999999999999974 235555 2 2569999999999999999999999999
Q ss_pred cCccCCCeEEEEEeCCC-CcceeEeEEEEeeeeecCCc-cccccHHHHHHHHHHHhccCcccCCcEEEEEEcCeeEEEEE
Q 007661 83 AKVSTGDHVSLNRFIPP-EDFNLALLTVELEFVKKGSK-NEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTV 160 (594)
Q Consensus 83 ~~~~~~~~v~v~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v 160 (594)
+++++||.|+|++|.++ ...++..+++||+|..+++. ...+|.++|+..|+++|.+|+|++||.+.+.|.|..+.++|
T Consensus 74 a~lsl~~~v~V~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~gQ~l~f~~~g~~l~l~V 153 (211)
T 1qcs_A 74 AGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQAFSVGQQLVFSFNDKLFGLLV 153 (211)
T ss_dssp HTCCTTCEEEEEEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHTTCEEETTCEEEEEETTEEEEEEE
T ss_pred hcccCCCcEEEEEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHcCCCCCCCCEEEEEECCcEEEEEE
Confidence 99999999999999755 45689999999999876553 56799999999999999999999999999999999999999
Q ss_pred EEeeecC------cc---ccccccceeEcCCcEEEEEecCCCceeeecccC
Q 007661 161 NGAAVEG------QE---KSNALERGIITNETYFVFEASNDSGIKIVNQRE 202 (594)
Q Consensus 161 ~~~~~~~------~~---~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 202 (594)
++++... .. ......+|+++++|.|.|.+...+.+++.++.+
T Consensus 154 ~~v~~~d~~~~~~~~~~~~~~~~~~GiL~~~T~i~F~k~~~S~i~L~~~~~ 204 (211)
T 1qcs_A 154 KDIEAMDPSILKGEPASGKRQKIEVGLVVGNSQVAFEKAENSSLNLIGKAK 204 (211)
T ss_dssp EEEEECCCCTTC-------CCBCSEEECCTTCEEEEEECTTCCCEEESSSB
T ss_pred eEEEEecccccccCcccccCCCcceeEEcCCcEEEEEECCCCCEEEEECCC
Confidence 9987621 11 112356899999999999999999999987654
No 30
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=99.95 E-value=9.8e-27 Score=219.46 Aligned_cols=171 Identities=22% Similarity=0.358 Sum_probs=146.1
Q ss_pred ceeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCcEEEEEeeCCCCCCCceeeCHhhhhccCccCCCeE
Q 007661 12 VTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDSFVLSLASHPSVNKGQIALNSVQRRHAKVSTGDHV 91 (594)
Q Consensus 12 ~~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~~~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v 91 (594)
...|+|++||++++++||||||||+||+. ..|++| ++.|||++.+++++++|+|++|..||+|+++++||.|
T Consensus 5 ~~~l~v~~~P~~~la~TN~~~vsp~Df~~-------~~~v~v-~~~fVft~~~~~~i~~G~I~ls~~QR~wa~lsl~~~v 76 (189)
T 1cr5_A 5 TRHLKVSNCPNNSYALANVAAVSPNDFPN-------NIYIII-DNLFVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDV 76 (189)
T ss_dssp CEEEEEEECCCHHHHTTTEEEECTTTSCS-------SCEEEE-TTTEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEE
T ss_pred ccEEEEEeCCChhhhhcceEEECHHHcCC-------CceEEE-cCcEEEEEecCCCCCCCEEecCHHHHHhhcccCCCeE
Confidence 34799999999999999999999999973 258888 6779999999999999999999999999999999999
Q ss_pred EEEEeCCC----CcceeEeEEEEeeeeecCCc-cccccHHHHHHHHHHHhccCcccCCcEEEEEEcCeeEEEEEEEeee-
Q 007661 92 SLNRFIPP----EDFNLALLTVELEFVKKGSK-NEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAV- 165 (594)
Q Consensus 92 ~v~~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~- 165 (594)
+|++|.|+ ...++..+++||+|..+++. ...+|.++|+..|+++|.+|+|++||.+.+.|+|..+.++|++++.
T Consensus 77 ~V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~gQ~l~f~~~g~~l~l~V~~i~~~ 156 (189)
T 1cr5_A 77 QAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIFSPTQYLIMEFQGHFFDLKIRNVQAI 156 (189)
T ss_dssp EEEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTTCEECTTCEEEEEETTEEEEEEEEEEEEE
T ss_pred EEEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHcCCCCCCCCEEEEEECCcEEEEEEEEEEEe
Confidence 99999762 34689999999999876653 6789999999999999999999999999999999999999999876
Q ss_pred c-C------ccccccccceeEcCCcEEEEEec
Q 007661 166 E-G------QEKSNALERGIITNETYFVFEAS 190 (594)
Q Consensus 166 ~-~------~~~~~~~~~~~~~~~t~~~~~~~ 190 (594)
+ + ...+....+|++.++|.|.|.+.
T Consensus 157 d~~~~~~~~~~~~~~~~~GiL~~~T~i~F~k~ 188 (189)
T 1cr5_A 157 DLGDIEPTSAVATGIETKGILTKQTQINFFKG 188 (189)
T ss_dssp CTTSSSCSSCCBCSTTCCEECCTTCEEEEEEC
T ss_pred ccccccccCcCCCCccceEEEcCCcEEEEEeC
Confidence 1 1 11223456899999999998864
No 31
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.95 E-value=1.7e-26 Score=265.69 Aligned_cols=309 Identities=19% Similarity=0.245 Sum_probs=203.9
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~ 285 (594)
.|++ +.|.+.+++.+ .+.+. ...+.++||+||||||||++|+++++.+. ...++.
T Consensus 184 ~~d~--~iGr~~~i~~l-~~~l~-------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 184 GIDP--LIGREKELERA-IQVLC-------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp CSCC--CCSCHHHHHHH-HHHHT-------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred CCCC--ccCCHHHHHHH-HHHHh-------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 5676 89999998887 44332 23557899999999999999999998872 233455
Q ss_pred Eecchhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 286 VNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 286 v~~~~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
++...+. .+|.|+.+..++.+|+.+.... +.||||||+|.+++.++...+ .....+.|.. +-
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~--------~~iL~IDEi~~l~~~~~~~~~----~~~~~~~L~~----~l 311 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDT--------NSILFIDEIHTIIGAGAASGG----QVDAANLIKP----LL 311 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSS--------CEEEEETTTTTTTTSCCSSSC----HHHHHHHHSS----CS
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcC--------CeEEEEechHHHhhcCCCCcc----hHHHHHHHHH----HH
Confidence 6666665 4688999999999999887643 459999999999876543211 2223333333 33
Q ss_pred ccCcEEEEEeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccC-CCCCCcccHHHHHHHcCC-
Q 007661 364 SLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN-SFLAPDVNLQELAARTKN- 436 (594)
Q Consensus 364 ~~~~v~vI~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~-~~l~~~~~l~~la~~t~g- 436 (594)
..+++.+|++||.++ .+|++|.| ||. .+.++.|+.+++.+||+.+.+.+... .....+..+..++..+.+
T Consensus 312 ~~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 312 SSGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp SSCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred hCCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 456899999999865 36899998 898 69999999999999999877653211 111234456666666544
Q ss_pred ----CCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc--cCCCcCCcccccc-----ccCcc
Q 007661 437 ----YSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV--PAFGASTDDLERS-----RLNGM 505 (594)
Q Consensus 437 ----~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~--ps~~~~~~~~~~~-----~~~~~ 505 (594)
+.+..+..++.+|...+..... ......++.+|+..++..+. |.......+.... .+...
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~~~---------~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~~l~~~ 459 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLMPV---------SKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKML 459 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHSSS---------CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHHHHTTT
T ss_pred cccccCchHHHHHHHHHHHHHhcccc---------cccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhh
Confidence 4455677788887754432110 01234689999999998763 3222222211100 01111
Q ss_pred eeccchhhHHHHHHHHHHHHHH---hcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 506 VDCGDRHKHIYQRAMLLVEQVK---VSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
+.. ..+.+..+.......+ ..+.+|..++||+||||||||++|+++|..++.+|+.+++++.
T Consensus 460 v~g---~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 460 VFG---QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp SCS---CHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred ccC---HHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 111 1223333323333222 2334677889999999999999999999999999999999886
No 32
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=1.3e-25 Score=229.03 Aligned_cols=180 Identities=21% Similarity=0.290 Sum_probs=138.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
+.++|+++|||||||||||++|+++|+++ +.+++.++++++.++|.|+.+..++++|+.+..... ...|+|||||
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l-~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~----~~~~~vl~iD 106 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR----KGNMCCLFIN 106 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHH-TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT----TSSCCCEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh----cCCCeEEEEe
Confidence 67889999999999999999999999999 577889999999999999999999999999953211 1236799999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc-----------ccCcEEEEEeeCCcccccHHhhCCCCccceeecCC
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-----------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL 398 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~-----------~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~ 398 (594)
|||.+++.++...........+.+.|+..||+.. ...+++||+|||+++.||++++|+|||+..++ .
T Consensus 107 EiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~ 184 (293)
T 3t15_A 107 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--A 184 (293)
T ss_dssp CCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--C
T ss_pred chhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--C
Confidence 9999998665433333345677789999988543 45689999999999999999999999998887 5
Q ss_pred CCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHH
Q 007661 399 PDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEG 444 (594)
Q Consensus 399 P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~ 444 (594)
|+.++|.+|++.++.. .++++..++..+.+|++++|..
T Consensus 185 P~~~~r~~Il~~~~~~--------~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 185 PTREDRIGVCTGIFRT--------DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CCHHHHHHHHHHHHGG--------GCCCHHHHHHHHHHSCSCCHHH
T ss_pred cCHHHHHHHHHHhccC--------CCCCHHHHHHHhCCCCcccHHH
Confidence 7999999999977753 3567899999999999999864
No 33
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.92 E-value=1.3e-24 Score=249.77 Aligned_cols=304 Identities=19% Similarity=0.260 Sum_probs=177.9
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh---------CCCCcEE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML---------NGMEPKI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l---------~~~~~~~ 285 (594)
.+++ |.|.+++++++ ...+.. ....++||+||||||||++|+++|+.+ .+..++.
T Consensus 178 ~ld~--iiG~~~~i~~l-~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 178 SLDP--VIGRSKEIQRV-IEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp CSCC--CCCCHHHHHHH-HHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCC--ccCchHHHHHH-HHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 4666 99999999988 444322 345689999999999999999999997 2334444
Q ss_pred EecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcccc
Q 007661 286 VNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL 365 (594)
Q Consensus 286 v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~ 365 (594)
+++ ..+|.|+.+..++.+|+.+.... ++||||| +. ....+.|+..++ .
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~--------~~iLfiD---------~~--------~~~~~~L~~~l~----~ 289 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAG--------NIILFID---------AA--------IDASNILKPSLA----R 289 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCC--------CCEEEEC---------C----------------CCCTT----S
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcC--------CEEEEEc---------Cc--------hhHHHHHHHHHh----c
Confidence 554 56788999999999999998754 4599999 10 112234444443 5
Q ss_pred CcEEEEEeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCC-CCCcccHHHHHHHcC----
Q 007661 366 NNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF-LAPDVNLQELAARTK---- 435 (594)
Q Consensus 366 ~~v~vI~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~-l~~~~~l~~la~~t~---- 435 (594)
+.+.+|++||..+ .+|++++| ||. .|.|+.|+.+++.+||+.+...+..... ...+..+..++..++
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~ 366 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccc
Confidence 6899999999988 58999999 994 6999999999999999987766543211 223444566655543
Q ss_pred -CCCHHHHHHHHHHHHHHHHHhccCcccCCCC--------------------------------------------c---
Q 007661 436 -NYSGAELEGVAKSAVSFALNRQLSMDDLTKP--------------------------------------------V--- 467 (594)
Q Consensus 436 -g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~--------------------------------------------~--- 467 (594)
++.+.....++.+|+..+..+.......... +
T Consensus 367 ~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 446 (758)
T 3pxi_A 367 DRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEK 446 (758)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHH
T ss_pred cCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777765543322110000000 0
Q ss_pred -ccchhhcchhHHHHHHHhcc--cCCCcCCccccccccCcceec----cchhhHHHHHHHHHHHHHH---hcCCCcceEE
Q 007661 468 -DEESIKVTMDDFLHALYEIV--PAFGASTDDLERSRLNGMVDC----GDRHKHIYQRAMLLVEQVK---VSKGSPLVTC 537 (594)
Q Consensus 468 -~~~~~~vt~~df~~al~~~~--ps~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~p~~gv 537 (594)
......++.+++...+.... |.......+ +..+..+... -....+.+..+...+.... ..+.+|..++
T Consensus 447 ~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~--~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~ 524 (758)
T 3pxi_A 447 QGQENSEVTVDDIAMVVSSWTGVPVSKIAQTE--TDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSF 524 (758)
T ss_dssp HHCC---CCTHHHHHHHHTTC-------CHHH--HSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEE
T ss_pred hcccCcccCHHHHHHHHHHHhCCChHHhhHHH--HHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEE
Confidence 00112344444444444331 111000000 0000000000 0011223333333333332 2234566689
Q ss_pred EeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 538 LLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 538 LL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
||+||||||||++|+++|..+ +.+|+.++++++.
T Consensus 525 Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 525 IFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 999999999999999999886 8999999999886
No 34
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.91 E-value=4.6e-24 Score=247.83 Aligned_cols=205 Identities=19% Similarity=0.258 Sum_probs=129.8
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh---------CCCCcE
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML---------NGMEPK 284 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l---------~~~~~~ 284 (594)
-+|++ +.|.+++++.++ +.+.. ..+.++||+||||||||++|+++|+.+ .+..++
T Consensus 167 ~~ld~--viGr~~~i~~l~-~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 167 GKLDP--VIGRDEEIRRVI-QILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp TCSCC--CCSCHHHHHHHH-HHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred CCCcc--cCCcHHHHHHHH-HHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 45776 899999888883 33321 234579999999999999999999987 245677
Q ss_pred EEecchhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc
Q 007661 285 IVNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (594)
Q Consensus 285 ~v~~~~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~ 362 (594)
.+++..+. .+|.|+.+..++.+|+.+.... .++||||||+|.+.+.+.... ...+.+.|...++
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~-------~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~-- 296 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQ-------GEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA-- 296 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTC-------SSEEEEECCC------------------------HHHHH--
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcC-------CCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh--
Confidence 88888887 5788999999999999988641 256999999999986543321 1122223333332
Q ss_pred cccCcEEEEEeeCCccc----ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccC-CCCCCcccHHHHHHHcC--
Q 007661 363 ESLNNVLLIGMTNRKDM----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN-SFLAPDVNLQELAARTK-- 435 (594)
Q Consensus 363 ~~~~~v~vI~~tn~~~~----ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~-~~l~~~~~l~~la~~t~-- 435 (594)
.+++.+|++||.++. +|++|.| ||.. +.++.|+.+++.+||+.++...... .....+..+..++..++
T Consensus 297 --~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~ 371 (854)
T 1qvr_A 297 --RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 (854)
T ss_dssp --TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred --CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhh
Confidence 357889999998764 7999999 8885 9999999999999999877654311 11123344556665543
Q ss_pred ---CCCHHHHHHHHHHHHHHH
Q 007661 436 ---NYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 436 ---g~sg~dl~~l~~~A~~~a 453 (594)
.|.+.....++.+|+..+
T Consensus 372 i~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 372 ITERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp CCSSCTHHHHHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHH
Confidence 455666666777666544
No 35
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=3e-23 Score=224.48 Aligned_cols=204 Identities=18% Similarity=0.192 Sum_probs=138.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC-CCcEEEecch
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG-MEPKIVNGPE 290 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~-~~~~~v~~~~ 290 (594)
|...|++ |+|++..++.+ ...+.. -..|..+++++|||||||||||++|+++|++++. .+++.+++++
T Consensus 32 ~~~~~~~--iiG~~~~~~~l-~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~ 100 (456)
T 2c9o_A 32 AKQAASG--LVGQENAREAC-GVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSE 100 (456)
T ss_dssp BCSEETT--EESCHHHHHHH-HHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGG
T ss_pred hhhchhh--ccCHHHHHHHH-HHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHH
Confidence 5667887 99999998877 554432 1236678899999999999999999999999842 5778899999
Q ss_pred hhhcccchhHHHHHHHHHHH---HhhccccCCCCCcEEEEEccchhhhccCCCCCCCC--chHH---------------H
Q 007661 291 VLSKFVGETEKNIRDLFADA---ENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGT--GVHD---------------S 350 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a---~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~--~~~~---------------~ 350 (594)
+.++|.|+++. ++++|+.| ... .|+||||||+|.++++++....+. .... +
T Consensus 101 ~~~~~~~~~~~-~~~~f~~a~~~~~~--------~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 171 (456)
T 2c9o_A 101 VYSTEIKKTEV-LMENFRRAIGLRIK--------ETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLK 171 (456)
T ss_dssp GCCSSSCHHHH-HHHHHHHTEEEEEE--------EEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEE
T ss_pred HHHHhhhhhHH-HHHHHHHHHhhhhc--------CCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHh
Confidence 99999999997 99999998 443 367999999999999886542210 0111 2
Q ss_pred HHHHHHHhhc--CccccCcEEEEEeeCCcccccHHhhCCCCccc--eeecCCCC--HHHHHHHHHHHHhccccCCCCCCc
Q 007661 351 IVNQLLTKID--GVESLNNVLLIGMTNRKDMLDEALLRPGRLEV--QVEISLPD--ENGRLQILQIHTNKMKENSFLAPD 424 (594)
Q Consensus 351 ~v~~Ll~~ld--~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~--~i~i~~P~--~~~r~~IL~~~~~~~~~~~~l~~~ 424 (594)
+.++++..++ ++.....++|+++||+++.+|++++|++||+. .+.++.|+ .++|.+|++.++.
T Consensus 172 ~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~----------- 240 (456)
T 2c9o_A 172 LDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL----------- 240 (456)
T ss_dssp ECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-----------
T ss_pred hhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-----------
Confidence 2234555554 33343446667999999999999999999998 56677774 4778888764331
Q ss_pred ccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 425 VNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 425 ~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
.|++.++..+.| |+|+.++|..
T Consensus 241 ~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 241 HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp HHHHHTC-----------------
T ss_pred HHHHHHHHhCCC--hhHHHHHHhh
Confidence 278899999999 9999999854
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.84 E-value=1.5e-20 Score=192.58 Aligned_cols=215 Identities=18% Similarity=0.228 Sum_probs=165.8
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCC---ceEEEEcCCCCcHHHHHHHHHHhhC------CCCcEEEecchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHV---KGMLLYGPPGTGKTLMARQIGKMLN------GMEPKIVNGPEV 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---~giLL~GppGtGKT~lar~ia~~l~------~~~~~~v~~~~l 291 (594)
|+|+++.++.+ ++.+.... .+....++|+.++ .++||+||||||||++|+++++.+. ..+++.+++.++
T Consensus 33 i~G~~~~~~~l-~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 33 LIGLKPVKDRI-RETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp SSSCHHHHHHH-HHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred ccChHHHHHHH-HHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 99999999998 66666544 3666677776544 4699999999999999999999873 226788999999
Q ss_pred hhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEE
Q 007661 292 LSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLI 371 (594)
Q Consensus 292 ~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI 371 (594)
.+.+.|.....+..+|+.+.. +||||||+|.+++.++.. .....+++.|+..|+. ...++++|
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~-----------~vl~iDEid~l~~~~~~~----~~~~~~~~~Ll~~l~~--~~~~~~~i 173 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAMG-----------GVLFIDEAYYLYRPDNER----DYGQEAIEILLQVMEN--NRDDLVVI 173 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHTT-----------SEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHH--CTTTCEEE
T ss_pred hhhcccccHHHHHHHHHhcCC-----------CEEEEEChhhhccCCCcc----cccHHHHHHHHHHHhc--CCCCEEEE
Confidence 999999999999999988742 399999999998654331 2346677888888874 34578999
Q ss_pred EeeCCccc-----ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHH-------cCCCCH
Q 007661 372 GMTNRKDM-----LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAAR-------TKNYSG 439 (594)
Q Consensus 372 ~~tn~~~~-----ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~-------t~g~sg 439 (594)
+++|.++. ++|+|++ ||+..++|+.|+.+++.+|++.+++.... ..++..+..++.. ...-++
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~---~~~~~~~~~l~~~~~~~~~~~~~gn~ 248 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNY---QMTPEAETALRAYIGLRRNQPHFANA 248 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHHHHHHTTSSSCCHH
T ss_pred EeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhccCCCCCcH
Confidence 99987642 5799998 99999999999999999999999876432 1233345666665 223358
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 007661 440 AELEGVAKSAVSFALNRQLS 459 (594)
Q Consensus 440 ~dl~~l~~~A~~~a~~r~~~ 459 (594)
+++.++++.|...+..|...
T Consensus 249 r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 249 RSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888777543
No 37
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.81 E-value=2.9e-19 Score=223.19 Aligned_cols=320 Identities=16% Similarity=0.160 Sum_probs=184.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhcc-ccC------CCCCcE
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQR-TRG------DQSDLH 324 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~-~~~------~~~~~~ 324 (594)
...+++||+||||||||++|+.+........+..++++...+ ...+...++....... ..| .....+
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence 345799999999999999997766665555666677665432 2345555554322110 000 022357
Q ss_pred EEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc--------cCcEEEEEeeCCcc-----cccHHhhCCCCcc
Q 007661 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES--------LNNVLLIGMTNRKD-----MLDEALLRPGRLE 391 (594)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~--------~~~v~vI~~tn~~~-----~ld~al~r~gRf~ 391 (594)
||||||+|.....+.+ ++..-+++.|+++. .++.. ..++.+|||||+|. .|+++++| ||
T Consensus 1339 VlFiDEinmp~~d~yg----~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf- 1410 (2695)
T 4akg_A 1339 VLFCDEINLPKLDKYG----SQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA- 1410 (2695)
T ss_dssp EEEEETTTCSCCCSSS----CCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-
T ss_pred EEEecccccccccccC----chhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-
Confidence 9999999975443322 23455677777643 22211 23689999999994 79999999 77
Q ss_pred ceeecCCCCHHHHHHHHHHHHhccccCCCCCCccc-------------HHHHHHH-------cCCCCHHHHHHHHHHHHH
Q 007661 392 VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVN-------------LQELAAR-------TKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 392 ~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~-------------l~~la~~-------t~g~sg~dl~~l~~~A~~ 451 (594)
..+.++.|+.+++..|+..+++..... .+++. +..+... -.-|+.+||..+++-...
T Consensus 1411 ~vi~i~~P~~~~l~~I~~~il~~~l~~---~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1411 AILYLGYPSGKSLSQIYEIYYKAIFKL---VPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp EEEECCCCTTTHHHHHHHHHHHHHTTS---SGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 579999999999999999988754321 11110 1111111 124789999887765443
Q ss_pred HHHHhccCc-ccC------------CC-CcccchhhcchhHHHHHHHhcccCCCcC---Ccccccccc--Ccceecc---
Q 007661 452 FALNRQLSM-DDL------------TK-PVDEESIKVTMDDFLHALYEIVPAFGAS---TDDLERSRL--NGMVDCG--- 509 (594)
Q Consensus 452 ~a~~r~~~~-~~~------------~~-~~~~~~~~vt~~df~~al~~~~ps~~~~---~~~~~~~~~--~~~~~~~--- 509 (594)
......... ..+ .+ -.+.++.....+-+.+.+.+.-+..... ...+-.... ....++.
T Consensus 1488 ~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~df~~~~Y~~v~~~~ 1567 (2695)
T 4akg_A 1488 AINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSGLLSLDFKEVNKTD 1567 (2695)
T ss_dssp HHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEESSSSSSCEECCHHH
T ss_pred cCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccchhhhccCCceeeecCCCcceecCHHH
Confidence 211110000 000 00 0011112222222233333322211000 000000000 0111111
Q ss_pred --chhhHH---------------HHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccccc
Q 007661 510 --DRHKHI---------------YQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMI 572 (594)
Q Consensus 510 --~~~~~~---------------~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~v 572 (594)
..+++. +..+..|+-++.+.-.+|.+++||+|++|||||+|+|..|..+++.+++|..+..|
T Consensus 1568 l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y- 1646 (2695)
T 4akg_A 1568 LVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHS- 1646 (2695)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTC-
T ss_pred HHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCC-
Confidence 111111 12244455555566668999999999999999999999999999999999999988
Q ss_pred ccccchhhhHHHHHHHhhh
Q 007661 573 GLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 573 G~sE~~~~~~ir~~F~~A~ 591 (594)
|.+|-.. .||+++++|-
T Consensus 1647 ~~~~f~e--DLk~l~~~aG 1663 (2695)
T 4akg_A 1647 NLSDFDM--ILKKAISDCS 1663 (2695)
T ss_dssp CHHHHHH--HHHHHHHHHH
T ss_pred CHHHHHH--HHHHHHHHcC
Confidence 5556443 4999999883
No 38
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=2.7e-20 Score=197.57 Aligned_cols=169 Identities=20% Similarity=0.212 Sum_probs=79.6
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCC-CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-cccc
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIK-HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVG 297 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~-~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~-~~~g 297 (594)
.|+|++..++.+ ..++..+...+.++..+... +++++||+||||||||++|+++|+.+ +.+++.++++.+.+ .|+|
T Consensus 16 ~IvGqe~ak~~l-~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l-~~~~~~v~~~~~~~~g~vG 93 (444)
T 1g41_A 16 HIIGQADAKRAV-AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVG 93 (444)
T ss_dssp TCCSCHHHHHHH-HHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEGGGGC----CC
T ss_pred HhCCHHHHHHHH-HHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc-CCCceeecchhhcccceee
Confidence 399999999888 67776665555554444433 67899999999999999999999998 46778899999888 5999
Q ss_pred h-hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEe-eC
Q 007661 298 E-TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGM-TN 375 (594)
Q Consensus 298 ~-~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~-tn 375 (594)
+ .+..++.+|+.+... +++||++.+.... .....++++++|+..||++....++ +++ ||
T Consensus 94 ~d~e~~lr~lf~~a~~~------------~~~De~d~~~~~~-----~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN 154 (444)
T 1g41_A 94 KEVDSIIRDLTDSAMKL------------VRQQEIAKNRARA-----EDVAEERILDALLPPAKNQWGEVEN--HDSHSS 154 (444)
T ss_dssp CCTHHHHHHHHHHHHHH------------HHHHHHHSCC-----------------------------------------
T ss_pred ccHHHHHHHHHHHHHhc------------chhhhhhhhhccc-----hhhHHHHHHHHHHHHhhcccccccc--cccccc
Confidence 5 899999999998764 3578888765322 2245689999999999999776665 455 99
Q ss_pred CcccccHHhhCCCCccceeecCCCCHH-HHHHHHH
Q 007661 376 RKDMLDEALLRPGRLEVQVEISLPDEN-GRLQILQ 409 (594)
Q Consensus 376 ~~~~ld~al~r~gRf~~~i~i~~P~~~-~r~~IL~ 409 (594)
+++.||++|+|+|||+++|++++|+.. .|.+|+.
T Consensus 155 ~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 155 TRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp -----------------------------------
T ss_pred CHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhc
Confidence 999999999999999999999999987 7888864
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.78 E-value=4.1e-18 Score=178.83 Aligned_cols=230 Identities=19% Similarity=0.175 Sum_probs=159.8
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC-CcEEEecch
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM-EPKIVNGPE 290 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~-~~~~v~~~~ 290 (594)
|..+|++ +.|.+..++.+ ..+.... .-|..+++++||+||||||||++|+++++.+... +++.+++..
T Consensus 39 p~~~~~~--ivG~~~~~~~l-~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 39 PRQASQG--MVGQLAARRAA-GVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp BCSEETT--EESCHHHHHHH-HHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred cCcchhh--ccChHHHHHHH-HHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 6667888 99999987765 3222111 1134456899999999999999999999998643 566677766
Q ss_pred hhhcccch-------------------------------------------------hHHHHHHHHHHHHhhccccC-CC
Q 007661 291 VLSKFVGE-------------------------------------------------TEKNIRDLFADAENDQRTRG-DQ 320 (594)
Q Consensus 291 l~~~~~g~-------------------------------------------------~~~~i~~lf~~a~~~~~~~~-~~ 320 (594)
+...+.+. ....++..+..+.......+ ..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~ 187 (368)
T 3uk6_A 108 IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAE 187 (368)
T ss_dssp GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC--
T ss_pred hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccc
Confidence 54433332 23445556655544321111 11
Q ss_pred CCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEee-----------CCcccccHHhhCCCC
Q 007661 321 SDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMT-----------NRKDMLDEALLRPGR 389 (594)
Q Consensus 321 ~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~t-----------n~~~~ld~al~r~gR 389 (594)
..|+||||||+|.+. ....+.|+..++... ..++++++. |.+..+++++++ |
T Consensus 188 ~~~~vl~IDEi~~l~-------------~~~~~~L~~~le~~~--~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R 250 (368)
T 3uk6_A 188 IIPGVLFIDEVHMLD-------------IESFSFLNRALESDM--APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--R 250 (368)
T ss_dssp -CBCEEEEESGGGSB-------------HHHHHHHHHHTTCTT--CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--T
T ss_pred ccCceEEEhhccccC-------------hHHHHHHHHHhhCcC--CCeeeeecccceeeeeccCCCCcccCCHHHHh--h
Confidence 125699999999884 234566666665432 245554443 346779999999 8
Q ss_pred ccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCccc
Q 007661 390 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDE 469 (594)
Q Consensus 390 f~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~ 469 (594)
|.. +++++|+.+++.+||+.+++.... ..++..+..+++.+.+.+++++.++++.|...|..+
T Consensus 251 ~~~-i~~~~~~~~e~~~il~~~~~~~~~---~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------------- 313 (368)
T 3uk6_A 251 LLI-VSTTPYSEKDTKQILRIRCEEEDV---EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------------- 313 (368)
T ss_dssp EEE-EEECCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-------------
T ss_pred ccE-EEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-------------
Confidence 875 899999999999999988876331 234456888999988669999999999999888654
Q ss_pred chhhcchhHHHHHHHhc
Q 007661 470 ESIKVTMDDFLHALYEI 486 (594)
Q Consensus 470 ~~~~vt~~df~~al~~~ 486 (594)
+...|+.+|+.+++..+
T Consensus 314 ~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 314 KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp TCSSBCHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 23568999999998875
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=7.1e-18 Score=169.68 Aligned_cols=224 Identities=19% Similarity=0.226 Sum_probs=151.1
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh-hcccchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL-SKFVGET 299 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~-~~~~g~~ 299 (594)
+.|.+..+++++...-.. ...+...+..++.++||+||||||||++|+++++.++ .+++.+++++.. +...+..
T Consensus 35 ~i~~~~~~~~i~~~~~~l----~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~-~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 35 IIKWGDPVTRVLDDGELL----VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN-FPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp CCCCSHHHHHHHHHHHHH----HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT-CSEEEEECGGGCTTCCHHHH
T ss_pred CCCccHHHHHHHHHHHHH----HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC-CCEEEEeCHHHhcCCchHHH
Confidence 777777777774321110 1222333467788999999999999999999999974 566777776532 2222334
Q ss_pred HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc-cCcEEEEEeeCCcc
Q 007661 300 EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES-LNNVLLIGMTNRKD 378 (594)
Q Consensus 300 ~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~-~~~v~vI~~tn~~~ 378 (594)
...++.+|+.+.... +++|||||+|.++..+... ......+++.|...+++... ..++++|++||.++
T Consensus 110 ~~~~~~~~~~~~~~~--------~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~ 178 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQ--------LSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD 178 (272)
T ss_dssp HHHHHHHHHHHHTSS--------EEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH
T ss_pred HHHHHHHHHHHHhcC--------CcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh
Confidence 467888888886543 5699999999998654322 23345677778787776543 34688999999999
Q ss_pred cccH-HhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCC----CHHHHHHHHHHHHHHH
Q 007661 379 MLDE-ALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNY----SGAELEGVAKSAVSFA 453 (594)
Q Consensus 379 ~ld~-al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~----sg~dl~~l~~~A~~~a 453 (594)
.+++ .+++ ||...+++|.++. |.+|.+...+.. ..++.++..+++.+.|| +.+++.++++.|...+
T Consensus 179 ~l~~~~l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~-----~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 179 VLQEMEMLN--AFSTTIHVPNIAT--GEQLLEALELLG-----NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp HHHHTTCTT--TSSEEEECCCEEE--HHHHHHHHHHHT-----CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC
T ss_pred hcchhhhhc--ccceEEcCCCccH--HHHHHHHHHhcC-----CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc
Confidence 8888 5555 9988888876654 334444333321 23566789999999997 6778877777665221
Q ss_pred HHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 454 LNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 454 ~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
.....++|..++.+..
T Consensus 250 ------------------~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 250 ------------------PEYRVRKFLALLREEG 265 (272)
T ss_dssp ------------------GGGHHHHHHHHHHHTS
T ss_pred ------------------hHHHHHHHHHHHHHcC
Confidence 2245667777776653
No 41
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.7e-19 Score=188.27 Aligned_cols=96 Identities=20% Similarity=0.218 Sum_probs=91.6
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+++.|.+++|+.+....+.+.+.+++.+++.+.+.+..||+|+|||||||||||+||+|+|++++++|+.|++++++
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK 221 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -cccccchhhhHHHHHHHhhhcC
Q 007661 572 -IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|+||++ ||++|+.|++.
T Consensus 222 ~vGese~~----vr~lF~~Ar~~ 240 (405)
T 4b4t_J 222 YIGEGSRM----VRELFVMAREH 240 (405)
T ss_dssp STTHHHHH----HHHHHHHHHHT
T ss_pred ccchHHHH----HHHHHHHHHHh
Confidence 9999998 99999999875
No 42
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=3.7e-18 Score=174.48 Aligned_cols=253 Identities=22% Similarity=0.278 Sum_probs=164.9
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhc-CCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-cccc
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKL-GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS-KFVG 297 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~-g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~-~~~g 297 (594)
.|.|.+.+++.+ ..++..+...+.+...+ +-..+.++||+||||||||++|+++++.+ +.+++.++++++.. .|.|
T Consensus 16 ~i~G~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~i~~~~~~~~~~~~ 93 (310)
T 1ofh_A 16 HIIGQADAKRAV-AIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYVG 93 (310)
T ss_dssp TCCSCHHHHHHH-HHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH-TCCEEEEEGGGGSSCCSGG
T ss_pred hcCChHHHHHHH-HHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh-CCCEEEEcchhcccCCccC
Confidence 389999999888 55554432221111111 11356799999999999999999999998 45678899998876 5665
Q ss_pred hh-HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc--------ccCcE
Q 007661 298 ET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE--------SLNNV 368 (594)
Q Consensus 298 ~~-~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~--------~~~~v 368 (594)
.. ...+++++..+...... ...++||||||+|.+.+....... ......+.+.|+..+++.. ...++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEi~~l~~~~~~~~~-~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~ 169 (310)
T 1ofh_A 94 KEVDSIIRDLTDSAGGAIDA---VEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 169 (310)
T ss_dssp GSTTHHHHHHHHTTTTCHHH---HHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTC
T ss_pred ccHHHHHHHHHHHhhHHHhh---ccCCCEEEEEChhhcCcccccccc-chhHHHHHHHHHHHhcCCeEecccccccCCcE
Confidence 43 34566666533100000 001349999999999876532211 1122234677888877642 23478
Q ss_pred EEEEe----eCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHH----HHhcc----ccCC--CCCCcccHHHHHHHc
Q 007661 369 LLIGM----TNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQI----HTNKM----KENS--FLAPDVNLQELAART 434 (594)
Q Consensus 369 ~vI~~----tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~----~~~~~----~~~~--~l~~~~~l~~la~~t 434 (594)
++|++ ++.+..+++++++ ||+..++|++|+.+++.+|++. ..+.. .... ...++..++.|++.+
T Consensus 170 ~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 247 (310)
T 1ofh_A 170 LFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 247 (310)
T ss_dssp EEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHH
T ss_pred EEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHh
Confidence 88888 4577889999998 9998899999999999999983 11110 0000 012344577777776
Q ss_pred C-------CCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 435 K-------NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 435 ~-------g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
. +.+.+++.++++.+...+..+.... ......|+.+++.+++.+..
T Consensus 248 ~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~-------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 248 FRVNEKTENIGARRLHTVMERLMDKISFSASDM-------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC-------TTCEEEECHHHHHHHTCSSS
T ss_pred hhhcccccccCcHHHHHHHHHHHHhhhcCCccc-------cCCEEEEeeHHHHHHHHhhh
Confidence 2 4688999999998876554332110 12234599999999988653
No 43
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.76 E-value=5.1e-18 Score=161.52 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=130.8
Q ss_pred eeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCc---EEEEEeeCCCCCCCceeeCHhhhhccCccCCC
Q 007661 13 TTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTGD 89 (594)
Q Consensus 13 ~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~ 89 (594)
.+|+|..+..++ .+.|++||+.|.+|++. .|++|+|+|++ +++.+|+.++++.+.|+||+..|+|+|+.+||
T Consensus 27 ~~l~V~ea~~~D---rgivrl~p~~m~~Lgl~--~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD 101 (211)
T 3qwz_A 27 NRLIVDEAINED---NSVVSLSQPKMDELQLF--RGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 101 (211)
T ss_dssp EEEEEEECSCCC---TTEEEECHHHHHHHTCC--BTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC
T ss_pred CeeEEcccccCC---CcEEEECHHHHHHcCCC--CCCEEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCC
Confidence 479999998765 89999999999999993 23899998865 89999999999999999999999999999999
Q ss_pred eEEEEEe-CCCCcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhc--cCcccCCcEEEEEEcCeeEEEEEEEeeec
Q 007661 90 HVSLNRF-IPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFI--NQVMTAGQRVVFEYHGNNYIFTVNGAAVE 166 (594)
Q Consensus 90 ~v~v~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~~~ 166 (594)
.|+|+++ ..+ ++..|+|.. ....-..++.+.+..+++..|. +++|..|+.+.+.+.+..+.|+|++++|
T Consensus 102 ~V~V~~~~~v~---~A~~V~LaP----~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P- 173 (211)
T 3qwz_A 102 VISIQPCPDVK---YGKRIHVLP----IDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDP- 173 (211)
T ss_dssp EEEEEECTTCC---BCSEEEEEE----BGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEES-
T ss_pred EEEEEECCCCC---CceEEEEec----cCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecC-
Confidence 9999999 444 344444421 0001111344456788888887 7999999999998888899999999999
Q ss_pred CccccccccceeEcCCcEEEEEecCCCceeeecccCCccccccccCccccccCCccC
Q 007661 167 GQEKSNALERGIITNETYFVFEASNDSGIKIVNQREGANSNIFRHKEFNLQSLGIGG 223 (594)
Q Consensus 167 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igG 223 (594)
.+.++++++|.|.+...+... ...+ -+.+.++|+| |||
T Consensus 174 -------~g~viV~~~T~I~~~~~pv~~---~~~e-------~~~~~VtYeD--IGG 211 (211)
T 3qwz_A 174 -------SPYCIVAPDTVIHCEGEPIKR---EDEE-------ESLNEVGYDD--IGG 211 (211)
T ss_dssp -------SSEEEECTTCEEECCSCCBCC---CGGG-------SCCC-----------
T ss_pred -------CCCEEECCCcEEEEcCccccc---cccc-------ccCCCcceeC--CCC
Confidence 468899999999986543221 1000 0127899999 998
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.75 E-value=2.5e-18 Score=189.47 Aligned_cols=229 Identities=22% Similarity=0.235 Sum_probs=145.0
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh-------
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS------- 293 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~------- 293 (594)
+.|+++.++.+ .+.........+ + ++..++|+||||||||++|++++..+. ..+..+++..+..
T Consensus 83 i~G~~~vk~~i-~~~~~l~~~~~~------~-~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 83 HHGLEKVKERI-LEYLAVQKLTKS------L-KGPILCLAGPPGVGKTSLAKSIAKSLG-RKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp CSSCHHHHHHH-HHHHHHHHHSSS------C-CSCEEEEESSSSSSHHHHHHHHHHHHT-CEEEEECCCC----------
T ss_pred hccHHHHHHHH-HHHHHHHHhccc------C-CCCEEEEECCCCCCHHHHHHHHHHhcC-CCeEEEEecccchhhhhhhH
Confidence 99999988887 454433222211 1 566899999999999999999999984 5566677665433
Q ss_pred --cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccc-------
Q 007661 294 --KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVES------- 364 (594)
Q Consensus 294 --~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~------- 364 (594)
.|.|.....+...|..+.... | +|||||+|.+.+.+.. ...+.|+..||....
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~--------~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLN--------P-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp ----------CHHHHHHTTCSSS--------E-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSS
T ss_pred HHHHhccCchHHHHHHHHhhccC--------C-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeeccc
Confidence 567777777777777665432 2 9999999999754321 134557777764321
Q ss_pred ------cCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhcc--ccC-----CCCCCcccHHHHH
Q 007661 365 ------LNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKM--KEN-----SFLAPDVNLQELA 431 (594)
Q Consensus 365 ------~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~--~~~-----~~l~~~~~l~~la 431 (594)
..++++|+|||+++.++++|++ ||+ .|+++.|+.+++.+|++.++... ... ....++..+..++
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~ 292 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDII 292 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHH
T ss_pred CCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHH
Confidence 1578999999999999999999 995 79999999999999999876221 000 0011233456666
Q ss_pred HHcCC-CCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 432 ARTKN-YSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 432 ~~t~g-~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
....+ .+.++|++.+..++..+..+.+.. ......|+.+++.+++...
T Consensus 293 ~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~-------~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 293 RYYTREAGVRSLERQLAAICRKAAKAIVAE-------ERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHCCCSSSHHHHHHHHHHHHHHHHHHHTT-------CCSCCEECTTTTHHHHCSC
T ss_pred HhCChhhchhHHHHHHHHHHHHHHHHHHhc-------CCcceecCHHHHHHHhCCc
Confidence 54443 455777666655555544433221 1234578999999988754
No 45
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=1.2e-16 Score=165.67 Aligned_cols=213 Identities=21% Similarity=0.264 Sum_probs=152.0
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.+|++ +.|.+..++++ ..++..... .-.++.++||+||||||||++|+++++.+ +..++.++++.+.
T Consensus 26 ~~~~~--iiG~~~~~~~l-~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~-~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 26 SNFDG--YIGQESIKKNL-NVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEM-SANIKTTAAPMIE- 92 (338)
T ss_dssp CSGGG--CCSCHHHHHHH-HHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHT-TCCEEEEEGGGCC-
T ss_pred CCHHH--hCChHHHHHHH-HHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHh-CCCeEEecchhcc-
Confidence 36888 99999999888 555543211 12456689999999999999999999997 4567778887552
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc----------
Q 007661 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------- 363 (594)
Q Consensus 294 ~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------- 363 (594)
....+...+... ..+.+|||||+|.+. ....+.|+..++...
T Consensus 93 -----~~~~~~~~~~~~----------~~~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~~~~~~ 144 (338)
T 3pfi_A 93 -----KSGDLAAILTNL----------SEGDILFIDEIHRLS-------------PAIEEVLYPAMEDYRLDIIIGSGPA 144 (338)
T ss_dssp -----SHHHHHHHHHTC----------CTTCEEEEETGGGCC-------------HHHHHHHHHHHHTSCC---------
T ss_pred -----chhHHHHHHHhc----------cCCCEEEEechhhcC-------------HHHHHHHHHHHHhccchhhcccCcc
Confidence 222333333321 124599999999884 224445555555321
Q ss_pred ------ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCC
Q 007661 364 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNY 437 (594)
Q Consensus 364 ------~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~ 437 (594)
...++++|++||+...++++|++ ||+..+++++|+.+++.++++.+++.... ..++..+..++..+.|
T Consensus 145 ~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G- 218 (338)
T 3pfi_A 145 AQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRS- 218 (338)
T ss_dssp CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTT-
T ss_pred ccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCc-
Confidence 11248999999999999999998 99999999999999999999988876431 1234457778886554
Q ss_pred CHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 438 SGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 438 sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
+.+++.++++.+...+... ....++.+++..++...
T Consensus 219 ~~r~l~~~l~~~~~~a~~~-------------~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 219 TPRIALRLLKRVRDFADVN-------------DEEIITEKRANEALNSL 254 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHT-------------TCSEECHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhh-------------cCCccCHHHHHHHHHHh
Confidence 6789999999887666532 12357788888777664
No 46
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.7e-18 Score=181.30 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=91.1
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+++.|.+++|+.+....+.+.+.+++.+++.+...+..||+|||||||||||||+||+|+|++++++|+.|++++++
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK 255 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc
Confidence 467889999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -cccccchhhhHHHHHHHhhhcC
Q 007661 572 -IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|++|++ +|++|+.|++.
T Consensus 256 ~vGesek~----ir~lF~~Ar~~ 274 (437)
T 4b4t_I 256 YLGDGPRL----CRQIFKVAGEN 274 (437)
T ss_dssp SSSHHHHH----HHHHHHHHHHT
T ss_pred cCchHHHH----HHHHHHHHHhc
Confidence 9999998 99999999875
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.73 E-value=3.6e-17 Score=171.67 Aligned_cols=248 Identities=20% Similarity=0.260 Sum_probs=159.1
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhh-h-hcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc-ccc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVT-S-KLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK-FVG 297 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~-~-~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~-~~g 297 (594)
|.|++..++.+ ..++.......... . .-...++.++||+||||||||++|+++|+.+ +.+++.+++.++... |.|
T Consensus 17 i~G~~~~~~~l-~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-~~~~~~~~~~~l~~~~~~g 94 (363)
T 3hws_A 17 VIGQEQAKKVL-AVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-DVPFTMADATTLTEAGYVG 94 (363)
T ss_dssp CCSCHHHHHHH-HHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-TCCEEEEEHHHHTTCHHHH
T ss_pred ccCHHHHHHHH-HHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-CCCEEEechHHhccccccc
Confidence 79999999888 55553221110000 0 0011367899999999999999999999998 567888999988754 777
Q ss_pred hh-HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCch-HHHHHHHHHHhhcCcc------------
Q 007661 298 ET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGV-HDSIVNQLLTKIDGVE------------ 363 (594)
Q Consensus 298 ~~-~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~-~~~~v~~Ll~~ld~~~------------ 363 (594)
.. ...++.+|..+..... ...++||||||+|.+.+.+.....+... ...+++.|+..|++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~----~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~ 170 (363)
T 3hws_A 95 EDVENIIQKLLQKCDYDVQ----KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHP 170 (363)
T ss_dssp HHHTHHHHHHHHHTTTCHH----HHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-------------
T ss_pred ccHHHHHHHHHHHhhhhHH----hcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccC
Confidence 76 5667777776521100 0014599999999998876554322222 2348889999998431
Q ss_pred -------ccCcEEEEEeeCCc----------------------------------------cc-----ccHHhhCCCCcc
Q 007661 364 -------SLNNVLLIGMTNRK----------------------------------------DM-----LDEALLRPGRLE 391 (594)
Q Consensus 364 -------~~~~v~vI~~tn~~----------------------------------------~~-----ld~al~r~gRf~ 391 (594)
...++++|+++|.. +. +.|+|.. ||+
T Consensus 171 ~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~ 248 (363)
T 3hws_A 171 QQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLP 248 (363)
T ss_dssp ---CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCC
T ss_pred CCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccC
Confidence 22345556555532 11 5777877 999
Q ss_pred ceeecCCCCHHHHHHHHHH----HHhccc----cCC--CCCCcccHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccC
Q 007661 392 VQVEISLPDENGRLQILQI----HTNKMK----ENS--FLAPDVNLQELAA--RTKNYSGAELEGVAKSAVSFALNRQLS 459 (594)
Q Consensus 392 ~~i~i~~P~~~~r~~IL~~----~~~~~~----~~~--~l~~~~~l~~la~--~t~g~sg~dl~~l~~~A~~~a~~r~~~ 459 (594)
..+.+++|+.+++.+|++. ..+.+. ... ...++..++.|++ ....+..++|+++++.+...++.+...
T Consensus 249 ~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~ 328 (363)
T 3hws_A 249 VVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPS 328 (363)
T ss_dssp EEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTT
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999985 322211 100 0123344667775 445677799999999999888876432
Q ss_pred cccCCCCcccchhhcchhHHHHH
Q 007661 460 MDDLTKPVDEESIKVTMDDFLHA 482 (594)
Q Consensus 460 ~~~~~~~~~~~~~~vt~~df~~a 482 (594)
... .....|+.+++.+.
T Consensus 329 ~~~------~~~~~I~~~~v~~~ 345 (363)
T 3hws_A 329 MED------VEKVVIDESVIDGQ 345 (363)
T ss_dssp CCC------SEEEECHHHHTTCC
T ss_pred ccC------CceeEEcHHHHhCc
Confidence 211 12345666666443
No 48
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.4e-18 Score=181.74 Aligned_cols=96 Identities=23% Similarity=0.321 Sum_probs=90.9
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+++.|.+++|+.+....+.+.+.+++.+++.+...+..||+|||||||||||||+||+|+|++++++|+.|++++++
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK 282 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -cccccchhhhHHHHHHHhhhcC
Q 007661 572 -IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|+||++ +|++|..|++.
T Consensus 283 ~vGesek~----ir~lF~~Ar~~ 301 (467)
T 4b4t_H 283 YVGEGARM----VRELFEMARTK 301 (467)
T ss_dssp SSSHHHHH----HHHHHHHHHHT
T ss_pred cCCHHHHH----HHHHHHHHHhc
Confidence 9999998 99999999865
No 49
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.8e-18 Score=179.89 Aligned_cols=96 Identities=17% Similarity=0.233 Sum_probs=90.7
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+++.|.+++|+.+.+..+.+.+.++..+++.+...+..||+|+|||||||||||+||+|+|++++++|+.|++++++
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK 245 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -cccccchhhhHHHHHHHhhhcC
Q 007661 572 -IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|++|++ ||++|+.|++.
T Consensus 246 ~~Ge~e~~----ir~lF~~A~~~ 264 (428)
T 4b4t_K 246 YLGEGPRM----VRDVFRLAREN 264 (428)
T ss_dssp SCSHHHHH----HHHHHHHHHHT
T ss_pred ccchhHHH----HHHHHHHHHHc
Confidence 9999998 99999999864
No 50
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.6e-18 Score=180.98 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=90.2
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+...|.+++|+.+....+.+.+.+++.+++.+.+.+..||+|||||||||||||+||+|+|++++++|+.|++++++
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred -cccccchhhhHHHHHHHhhhcC
Q 007661 572 -IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|++|++ +|.+|..|++.
T Consensus 255 ~vGese~~----ir~lF~~A~~~ 273 (434)
T 4b4t_M 255 YIGEGAKL----VRDAFALAKEK 273 (434)
T ss_dssp CSSHHHHH----HHHHHHHHHHH
T ss_pred ccchHHHH----HHHHHHHHHhc
Confidence 9999998 99999999863
No 51
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=5.6e-18 Score=179.63 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=90.7
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+++.|.+++|+.+....+.+.+.+++.+++.+...+..||+|+|||||||||||+||+|+|++++++|+.|++++++
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK 254 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc
Confidence 467888999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -cccccchhhhHHHHHHHhhhcC
Q 007661 572 -IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|++|++ +|.+|..|+..
T Consensus 255 ~~Gese~~----ir~~F~~A~~~ 273 (437)
T 4b4t_L 255 YIGESARI----IREMFAYAKEH 273 (437)
T ss_dssp SSSHHHHH----HHHHHHHHHHS
T ss_pred cchHHHHH----HHHHHHHHHhc
Confidence 9999998 99999999864
No 52
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.71 E-value=2.2e-16 Score=147.51 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=125.4
Q ss_pred eeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCCc---EEEEEeeCCCCCCCceeeCHhhhhccCccCCC
Q 007661 13 TTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGDS---FVLSLASHPSVNKGQIALNSVQRRHAKVSTGD 89 (594)
Q Consensus 13 ~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~~---~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~ 89 (594)
.+|+|..+..++ .+.|++||+.|.+|++. .|++|+|+|++ .++.+|+.++++.+.|+||+..|+|+|+.+||
T Consensus 24 ~~l~V~ea~~~D---~givrl~p~~m~~Lgl~--~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD 98 (187)
T 3tiw_A 24 NRLIVDEAINED---NSVVSLSQPKMDELQLF--RGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD 98 (187)
T ss_dssp CEEEEEECSSCC---TTEEEECHHHHHHHTCC--TTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC
T ss_pred CeEEEcccccCC---CcEEEECHHHHHHcCCC--CCCEEEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCC
Confidence 479999998765 88999999999999993 24899998754 89999999999999999999999999999999
Q ss_pred eEEEEEe-CCCCcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhcc--CcccCCcEEEEEEcCeeEEEEEEEeeec
Q 007661 90 HVSLNRF-IPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFIN--QVMTAGQRVVFEYHGNNYIFTVNGAAVE 166 (594)
Q Consensus 90 ~v~v~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~v~~~~~~ 166 (594)
.|+|+++ ..+ ++..|+|.. ....-..++.+.+..+++..|.+ +++..|+.+.+.+.+..+.|+|++++|
T Consensus 99 ~V~V~~~~~v~---~A~~V~LaP----~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P- 170 (187)
T 3tiw_A 99 VISIQPCPDVK---YGKRIHVLP----IDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDP- 170 (187)
T ss_dssp EEEEEECTTCE---ECSEEEEEE----CCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEES-
T ss_pred EEEEEECCCCC---CceEEEEec----cccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecC-
Confidence 9999998 433 444455421 00000113334567888999985 999999999999988899999999999
Q ss_pred CccccccccceeEcCCcEEEEE
Q 007661 167 GQEKSNALERGIITNETYFVFE 188 (594)
Q Consensus 167 ~~~~~~~~~~~~~~~~t~~~~~ 188 (594)
.+..+++++|.|.++
T Consensus 171 -------~~~v~V~~~T~I~~e 185 (187)
T 3tiw_A 171 -------SPYCIVAPDTVIHCE 185 (187)
T ss_dssp -------SSEEECCTTCEEECC
T ss_pred -------CCCEEECCCcEEEec
Confidence 458899999999874
No 53
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=1.3e-16 Score=150.31 Aligned_cols=160 Identities=19% Similarity=0.332 Sum_probs=115.9
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh---------CCCCcE
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML---------NGMEPK 284 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l---------~~~~~~ 284 (594)
-.|++ +.|.+++++++ .+.+.. ..+.+++|+||||||||++|+++++.+ .+..++
T Consensus 19 ~~~~~--~~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 19 GKLDP--VIGRDEEIRRT-IQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp TCSCC--CCSCHHHHHHH-HHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred ccccc--cccchHHHHHH-HHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 45777 89999998888 443321 345789999999999999999999987 245667
Q ss_pred EEecchhh--hcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc
Q 007661 285 IVNGPEVL--SKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (594)
Q Consensus 285 ~v~~~~l~--~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~ 362 (594)
.+++.++. ..+.+.....+..+++.+.... .+.+|+|||+|.+.+.+.... .......+..++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~vl~iDe~~~l~~~~~~~~--~~~~~~~l~~~~~----- 148 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQE-------GNVILFIDELHTMVGAGKADG--AMDAGNMLKPALA----- 148 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHST-------TTEEEEEETGGGGTT--------CCCCHHHHHHHHH-----
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcC-------CCeEEEEeCHHHHhccCcccc--hHHHHHHHHHhhc-----
Confidence 78887776 4566777788888888765432 356999999999976543211 1122333333332
Q ss_pred cccCcEEEEEeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHH
Q 007661 363 ESLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQIL 408 (594)
Q Consensus 363 ~~~~~v~vI~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL 408 (594)
..++.+|++||.++ .+++++++ ||. .++++.|+.+++.+||
T Consensus 149 --~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 149 --RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred --cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 25788999999876 68999998 888 6999999999998876
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.68 E-value=1.7e-15 Score=159.37 Aligned_cols=231 Identities=19% Similarity=0.192 Sum_probs=155.1
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--------CCCc
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEP 283 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--------~~~~ 283 (594)
+.+.+++ +.|.+++++++ ...+...+ ....+.+++|+||||||||++++++++.+. ...+
T Consensus 14 ~~~~p~~--~~gr~~~~~~l-~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 81 (387)
T 2v1u_A 14 PDYVPDV--LPHREAELRRL-AEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKP 81 (387)
T ss_dssp TTCCCSC--CTTCHHHHHHH-HHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred CccCCCC--CCCHHHHHHHH-HHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEE
Confidence 4455566 99999999988 44443221 124567899999999999999999998872 3456
Q ss_pred EEEecchhhhcc----------------cchhHH-HHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCc
Q 007661 284 KIVNGPEVLSKF----------------VGETEK-NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTG 346 (594)
Q Consensus 284 ~~v~~~~l~~~~----------------~g~~~~-~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~ 346 (594)
+.+++....+.+ .|.... ....+++..... ..+++|||||+|.+...+
T Consensus 82 ~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vlilDEi~~l~~~~-------- 146 (387)
T 2v1u_A 82 IYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRL-------RGIYIIVLDEIDFLPKRP-------- 146 (387)
T ss_dssp EEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTS-------CSEEEEEEETTTHHHHST--------
T ss_pred EEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc-------CCeEEEEEccHhhhcccC--------
Confidence 678876533211 122122 233444333221 237799999999997432
Q ss_pred hHHHHHHHHHHhhcCccccCcEEEEEeeCCc---ccccHHhhCCCCccc-eeecCCCCHHHHHHHHHHHHhccccCCCCC
Q 007661 347 VHDSIVNQLLTKIDGVESLNNVLLIGMTNRK---DMLDEALLRPGRLEV-QVEISLPDENGRLQILQIHTNKMKENSFLA 422 (594)
Q Consensus 347 ~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~---~~ld~al~r~gRf~~-~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~ 422 (594)
.....+..++..++......++.+|++||.+ +.+++.+.+ ||.. .+.+++|+.+++.+|++.+++...... ..
T Consensus 147 ~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~ 223 (387)
T 2v1u_A 147 GGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPG-VL 223 (387)
T ss_dssp THHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT-TB
T ss_pred CCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC-CC
Confidence 1345667777766544324688999999987 678999998 7765 899999999999999998876421111 22
Q ss_pred CcccHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 423 PDVNLQELAARTK---NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 423 ~~~~l~~la~~t~---g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
++..++.+++.+. | ..+.+.++++.|...+..+ +...++.+++..++...
T Consensus 224 ~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~-------------~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 224 DPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERR-------------REERVRREHVYSARAEI 276 (387)
T ss_dssp CSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHT-------------TCSCBCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHc-------------CCCCcCHHHHHHHHHHH
Confidence 3445777888776 5 5678888999988777542 22457888888888765
No 55
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.68 E-value=1.3e-15 Score=157.13 Aligned_cols=226 Identities=16% Similarity=0.264 Sum_probs=146.9
Q ss_pred CccccccCCcc-CcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEec
Q 007661 212 KEFNLQSLGIG-GLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNG 288 (594)
Q Consensus 212 ~~~~~~~~~ig-Gl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~ 288 (594)
+..+|++.-+| +.......+ +.+...+ ...+.+++|+||||||||++|+++++.+. +..++++++
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~-~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVV-KEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHH-HHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCCcccCCCCCcHHHHHHHH-HHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 67788884223 233333333 4444322 12456899999999999999999999873 466788999
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcE
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
.++...+.+.........|...... +++|||||++.+..++ .....++..++.....+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~~~~~~~ 133 (324)
T 1l8q_A 74 DDFAQAMVEHLKKGTINEFRNMYKS---------VDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTLYLLEKQ 133 (324)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHT---------CSEEEEECGGGGTTCH-----------HHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHcCcHHHHHHHhcC---------CCEEEEcCcccccCCh-----------HHHHHHHHHHHHHHHCCCe
Confidence 8887665554433333333333221 4499999999986321 1122233333322233456
Q ss_pred EEEEeeCCcc---cccHHhhCCCCcc--ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHH
Q 007661 369 LLIGMTNRKD---MLDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELE 443 (594)
Q Consensus 369 ~vI~~tn~~~---~ld~al~r~gRf~--~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~ 443 (594)
+|+++++.+. .++++|++ ||. ..+++++ +.+++.+||+.+++.... ..++..++.|+..+ -+.+++.
T Consensus 134 iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~---~l~~~~l~~l~~~~--g~~r~l~ 205 (324)
T 1l8q_A 134 IILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNL---ELRKEVIDYLLENT--KNVREIE 205 (324)
T ss_dssp EEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHC--SSHHHHH
T ss_pred EEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhC--CCHHHHH
Confidence 7777777766 58899998 775 6799999 999999999998875432 23445688899988 4789999
Q ss_pred HHHHHHHHHHHHhccCcccCCCCcccchhhc-chhHHHHHHHhc
Q 007661 444 GVAKSAVSFALNRQLSMDDLTKPVDEESIKV-TMDDFLHALYEI 486 (594)
Q Consensus 444 ~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~v-t~~df~~al~~~ 486 (594)
+++..+.... ...+. ..+...+ +.+++.+++.+.
T Consensus 206 ~~l~~~~~~~-~~~l~--------~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 206 GKIKLIKLKG-FEGLE--------RKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHC-HHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-HHHhc--------cccccCCCCHHHHHHHHHHH
Confidence 9888877650 00000 0123457 889999888865
No 56
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=5.1e-16 Score=159.85 Aligned_cols=214 Identities=19% Similarity=0.288 Sum_probs=146.3
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.+|++ +.|.+..++++ +.++.... . .-..+.++||+||||||||++|+++++.+. ..+..++++.+..
T Consensus 9 ~~~~~--~ig~~~~~~~l-~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 9 KTLDE--YIGQERLKQKL-RVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELG-VNLRVTSGPAIEK 76 (324)
T ss_dssp CSTTT--CCSCHHHHHHH-HHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHT-CCEEEECTTTCCS
T ss_pred ccHHH--hhCHHHHHHHH-HHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeccccCC
Confidence 36777 99999988887 55543211 1 113457899999999999999999999984 5667788776532
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc----------
Q 007661 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------- 363 (594)
Q Consensus 294 ~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------- 363 (594)
...+...|..+ ...+.+|||||+|.+.+ .....|+..++...
T Consensus 77 ------~~~l~~~l~~~---------~~~~~~l~lDEi~~l~~-------------~~~~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 77 ------PGDLAAILANS---------LEEGDILFIDEIHRLSR-------------QAEEHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp ------HHHHHHHHTTT---------CCTTCEEEETTTTSCCH-------------HHHHHHHHHHHHSEEEECCSSSSS
T ss_pred ------hHHHHHHHHHh---------ccCCCEEEEECCccccc-------------chHHHHHHHHHhhhhHHhcccccc
Confidence 22222333220 11355999999998752 12233444443221
Q ss_pred ------ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCC
Q 007661 364 ------SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNY 437 (594)
Q Consensus 364 ------~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~ 437 (594)
...++.+|++||+++.+++++.+ ||...+.+++|+.+++.++++.++..... ..++..+..++..+.|
T Consensus 129 ~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G- 202 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRG- 202 (324)
T ss_dssp CCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCS-
T ss_pred ccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccC-
Confidence 11368899999999999999988 89889999999999999999988875432 2344567888888866
Q ss_pred CHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 438 SGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 438 sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
+.+++.++++.+...+..+ ....++.+++..++...
T Consensus 203 ~~r~l~~~l~~~~~~a~~~-------------~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 203 TMRVAKRLFRRVRDFAQVA-------------GEEVITRERALEALAAL 238 (324)
T ss_dssp CHHHHHHHHHHHTTTSTTT-------------SCSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh-------------cCCCCCHHHHHHHHHHh
Confidence 5688888888776444211 12346777777776654
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.66 E-value=1.6e-15 Score=162.83 Aligned_cols=196 Identities=14% Similarity=0.295 Sum_probs=134.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
+.+++||||||||||++|+++++.+. +..++++++.++...+.+.........|...... .+++||||
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~vL~ID 201 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRK--------KVDILLID 201 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTT--------TCSEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcC--------CCCEEEEe
Confidence 56899999999999999999999872 4567788888876554443322222233333221 24599999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCccc---ccHHhhCCCCcc--ceeecCCCCHHHH
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDM---LDEALLRPGRLE--VQVEISLPDENGR 404 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~---ld~al~r~gRf~--~~i~i~~P~~~~r 404 (594)
|++.+..+. .....|+..++.....+..+||++.+.+.. +++++++ ||. ..+++++|+.++|
T Consensus 202 Ei~~l~~~~-----------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r 268 (440)
T 2z4s_A 202 DVQFLIGKT-----------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETR 268 (440)
T ss_dssp CGGGGSSCH-----------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHH
T ss_pred CcccccCCh-----------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHH
Confidence 999986321 112223333333233345566655555655 7899998 664 7899999999999
Q ss_pred HHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 405 LQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 405 ~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
.+||+..++.... ..++..+..|+..+.| +.+++.++++.+...+... ...|+.+++.+++.
T Consensus 269 ~~iL~~~~~~~~~---~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~--------------~~~It~~~~~~~l~ 330 (440)
T 2z4s_A 269 KSIARKMLEIEHG---ELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT--------------GKEVDLKEAILLLK 330 (440)
T ss_dssp HHHHHHHHHHHTC---CCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS--------------SSCCCHHHHHHHTS
T ss_pred HHHHHHHHHHcCC---CCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh--------------CCCCCHHHHHHHHH
Confidence 9999988764321 1234458889988875 8999999999998777532 12478888888888
Q ss_pred hccc
Q 007661 485 EIVP 488 (594)
Q Consensus 485 ~~~p 488 (594)
...+
T Consensus 331 ~~~~ 334 (440)
T 2z4s_A 331 DFIK 334 (440)
T ss_dssp TTTC
T ss_pred HHhh
Confidence 7653
No 58
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.3e-15 Score=155.23 Aligned_cols=164 Identities=9% Similarity=0.087 Sum_probs=115.8
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---------CCCcEEEecchh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---------GMEPKIVNGPEV 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---------~~~~~~v~~~~l 291 (594)
+-|.++|+++| ...+... +.-..+.+++|+||||||||++++++++++. ...++.+||..+
T Consensus 22 L~~Re~E~~~i-~~~L~~~---------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 22 LKSQVEDFTRI-FLPIYDS---------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHH-HHHHHHH---------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCHHHHHHHH-HHHHHHH---------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 77888888888 3333322 2235778999999999999999999999983 224567888765
Q ss_pred hhc----------c------cchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHH
Q 007661 292 LSK----------F------VGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQL 355 (594)
Q Consensus 292 ~~~----------~------~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~L 355 (594)
.+. . .+.....++.+|+..... ...+.||+|||+|.+. .+.++..|
T Consensus 92 ~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~------~~~~~ii~lDE~d~l~------------~q~~L~~l 153 (318)
T 3te6_A 92 AGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKA------KKRKTLILIQNPENLL------------SEKILQYF 153 (318)
T ss_dssp C--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGG------GSCEEEEEEECCSSSC------------CTHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhc------cCCceEEEEecHHHhh------------cchHHHHH
Confidence 432 1 233556777788764211 1236799999999996 12456666
Q ss_pred HHhhcCccccCcEEEEEeeCCccc----ccHHhhCCCCcc-ceeecCCCCHHHHHHHHHHHHhccc
Q 007661 356 LTKIDGVESLNNVLLIGMTNRKDM----LDEALLRPGRLE-VQVEISLPDENGRLQILQIHTNKMK 416 (594)
Q Consensus 356 l~~ld~~~~~~~v~vI~~tn~~~~----ld~al~r~gRf~-~~i~i~~P~~~~r~~IL~~~~~~~~ 416 (594)
+.... ....++.+|+++|..+. +++++++ ||. ..|.|++++.++..+||+.+++...
T Consensus 154 ~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~ 215 (318)
T 3te6_A 154 EKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLL 215 (318)
T ss_dssp HHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_pred Hhccc--ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 65432 23457999999999865 4555666 775 5899999999999999999987653
No 59
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=3.9e-14 Score=136.46 Aligned_cols=208 Identities=16% Similarity=0.146 Sum_probs=138.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC----CCcEEEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG----MEPKIVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~----~~~~~v~~ 288 (594)
...|++ +.|.+.+++.+ +..+... .+.+++|+||||||||++++++++.+.. ..+..+++
T Consensus 13 p~~~~~--~~g~~~~~~~l-~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 13 PRTLDE--VVGQDEVIQRL-KGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp CSSGGG--CCSCHHHHHHH-HHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred CCCHHH--HcCcHHHHHHH-HHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 445777 89999999888 5555321 2235999999999999999999988621 23445555
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcE
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
.+... ...+...+.......+. ....+.+|+|||+|.+.+ ...+.|+..++. ...++
T Consensus 77 ~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~vliiDe~~~l~~-------------~~~~~l~~~l~~--~~~~~ 133 (226)
T 2chg_A 77 SDERG------IDVVRHKIKEFARTAPI--GGAPFKIIFLDEADALTA-------------DAQAALRRTMEM--YSKSC 133 (226)
T ss_dssp TCTTC------HHHHHHHHHHHHTSCCS--TTCSCEEEEEETGGGSCH-------------HHHHHHHHHHHH--TTTTE
T ss_pred ccccC------hHHHHHHHHHHhcccCC--CccCceEEEEeChhhcCH-------------HHHHHHHHHHHh--cCCCC
Confidence 43321 12233333333221111 113467999999999752 123334444442 23578
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
.+|++||.++.+++++.+ |+. .+++++|+.+++.++++.+++.... ..++..+..++..+.| +.+.+.++++.
T Consensus 134 ~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g-~~r~l~~~l~~ 206 (226)
T 2chg_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGG-DFRKAINALQG 206 (226)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred eEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 889999999999999998 777 8999999999999999988765331 1234467788888766 66777776666
Q ss_pred HHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 449 AVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 449 A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
+...+ ..|+.+|+.+++.
T Consensus 207 ~~~~~------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 207 AAAIG------------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHTC------------------SCBCHHHHHHHHH
T ss_pred HHhcC------------------ceecHHHHHHHhc
Confidence 65322 2588888888765
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.62 E-value=1.2e-14 Score=142.27 Aligned_cols=209 Identities=14% Similarity=0.129 Sum_probs=136.6
Q ss_pred CccccccCCcc--CcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEe
Q 007661 212 KEFNLQSLGIG--GLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVN 287 (594)
Q Consensus 212 ~~~~~~~~~ig--Gl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~ 287 (594)
+..+|++. ++ +.+..++.+ +.+... ..+.+++|+||||||||++|+++++.+. +..+.+++
T Consensus 23 ~~~~~~~~-~~~~~~~~~~~~l-~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 23 DDETFTSY-YPAAGNDELIGAL-KSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp TTCSTTTS-CC--CCHHHHHHH-HHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCChhhc-cCCCCCHHHHHHH-HHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 45678873 33 334555555 444332 2456899999999999999999998874 35667788
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
+.++...+... ++.. ..+.+|+|||+|.+... ......|+..++.....+.
T Consensus 88 ~~~~~~~~~~~--------~~~~----------~~~~vliiDe~~~~~~~-----------~~~~~~l~~~l~~~~~~~~ 138 (242)
T 3bos_A 88 LGIHASISTAL--------LEGL----------EQFDLICIDDVDAVAGH-----------PLWEEAIFDLYNRVAEQKR 138 (242)
T ss_dssp GGGGGGSCGGG--------GTTG----------GGSSEEEEETGGGGTTC-----------HHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHH--------HHhc----------cCCCEEEEeccccccCC-----------HHHHHHHHHHHHHHHHcCC
Confidence 87766543211 1111 12459999999998532 1112233333333333344
Q ss_pred E-EEEEeeCCcc---cccHHhhCCCCcc--ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHH
Q 007661 368 V-LLIGMTNRKD---MLDEALLRPGRLE--VQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 441 (594)
Q Consensus 368 v-~vI~~tn~~~---~ld~al~r~gRf~--~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~d 441 (594)
+ +|++++..++ .+++++.+ ||. ..++++.|+.+++.++++.+++.... ..++..++.++..+.| +.++
T Consensus 139 ~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g-~~r~ 212 (242)
T 3bos_A 139 GSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMAR-DLRT 212 (242)
T ss_dssp CEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTT-CHHH
T ss_pred CeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccC-CHHH
Confidence 4 4444444443 35688887 664 78999999999999999988875331 2344567888888865 8899
Q ss_pred HHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 442 LEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 442 l~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
+.++++.+...+... ...|+.+++.++++
T Consensus 213 l~~~l~~~~~~a~~~--------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 213 LFDVLDRLDKASMVH--------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHHH--------------TCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--------------CCCCcHHHHHHHhh
Confidence 999999988877532 23488888887764
No 61
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.61 E-value=9.2e-15 Score=156.90 Aligned_cols=214 Identities=21% Similarity=0.276 Sum_probs=144.7
Q ss_pred cccccCCccCcHHHH---HHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 214 FNLQSLGIGGLSAEF---ADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 214 ~~~~~~~igGl~~~~---~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
-+|++ +.|.+..+ +.+ +.++... ...++||+||||||||++|+++++.++ ..+..+++..
T Consensus 23 ~~l~~--ivGq~~~~~~~~~L-~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~-~~f~~l~a~~ 85 (447)
T 3pvs_A 23 ENLAQ--YIGQQHLLAAGKPL-PRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYAN-ADVERISAVT 85 (447)
T ss_dssp CSTTT--CCSCHHHHSTTSHH-HHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTT-CEEEEEETTT
T ss_pred CCHHH--hCCcHHHHhchHHH-HHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhC-CCeEEEEecc
Confidence 46777 99999887 455 5555432 125799999999999999999999984 4555565432
Q ss_pred hhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEE
Q 007661 291 VLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLL 370 (594)
Q Consensus 291 l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~v 370 (594)
.....++++|+.+..... ...+.+|||||+|.+... ..+.|+..++. +.+++
T Consensus 86 -------~~~~~ir~~~~~a~~~~~----~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~v~l 137 (447)
T 3pvs_A 86 -------SGVKEIREAIERARQNRN----AGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GTITF 137 (447)
T ss_dssp -------CCHHHHHHHHHHHHHHHH----TTCCEEEEEETTTCC-------------------CCHHHHHT----TSCEE
T ss_pred -------CCHHHHHHHHHHHHHhhh----cCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----CceEE
Confidence 234567777777765422 123569999999998532 12235555543 46778
Q ss_pred EEee--CCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhcccc----CCCCCCcccHHHHHHHcCCCCHHHHHH
Q 007661 371 IGMT--NRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEG 444 (594)
Q Consensus 371 I~~t--n~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~----~~~l~~~~~l~~la~~t~g~sg~dl~~ 444 (594)
|++| |....++++|++ |+. .+.++.|+.+++.++++..+..... .....++..++.|+..+.| +.+++.+
T Consensus 138 I~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln 213 (447)
T 3pvs_A 138 IGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALN 213 (447)
T ss_dssp EEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHH
T ss_pred EecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHH
Confidence 8777 444578999999 665 7889999999999999998876321 1112344567888888765 7888999
Q ss_pred HHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 445 VAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 445 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
+++.+...+.... .+...|+.+++.+++....
T Consensus 214 ~Le~a~~~a~~~~-----------~~~~~It~e~v~~~l~~~~ 245 (447)
T 3pvs_A 214 TLEMMADMAEVDD-----------SGKRVLKPELLTEIAGERS 245 (447)
T ss_dssp HHHHHHHHSCBCT-----------TSCEECCHHHHHHHHTCCC
T ss_pred HHHHHHHhccccc-----------CCCCccCHHHHHHHHhhhh
Confidence 9998886553110 0123577777777776543
No 62
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.61 E-value=3.9e-14 Score=138.21 Aligned_cols=212 Identities=18% Similarity=0.198 Sum_probs=140.5
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE-Eec----
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI-VNG---- 288 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~-v~~---- 288 (594)
-.|++ +.|.+.+++.+ ..++... ..+..++|+||||||||++++++++.+....... ..+
T Consensus 20 ~~~~~--~~g~~~~~~~l-~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 20 QTFAD--VVGQEHVLTAL-ANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp CSGGG--CCSCHHHHHHH-HHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred ccHHH--HhCcHHHHHHH-HHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 35676 89999999888 5555321 2335799999999999999999998874321100 000
Q ss_pred --c--------hhhhc--ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHH
Q 007661 289 --P--------EVLSK--FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLL 356 (594)
Q Consensus 289 --~--------~l~~~--~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll 356 (594)
. ++... ........++.+++.+... .....+.+|+|||+|.+. ...++.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vlviDe~~~l~-------------~~~~~~l~ 147 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----PARGRFKVYLIDEVHMLS-------------RHSFNALL 147 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCS----CSSSSSEEEEEETGGGSC-------------HHHHHHHH
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhc----hhcCCceEEEEECccccc-------------HHHHHHHH
Confidence 0 00000 0012233455555543221 112346799999999873 22445566
Q ss_pred HhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCC
Q 007661 357 TKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKN 436 (594)
Q Consensus 357 ~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g 436 (594)
..++.. ..++.+|++||.++.+++++.+ |+ ..+++++|+.++..++++.+++.... ..++..+..+++.+.|
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEG 219 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTT
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCC
Confidence 666532 3578999999999999999988 54 58999999999999999988865321 1234467889999977
Q ss_pred CCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHH
Q 007661 437 YSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHAL 483 (594)
Q Consensus 437 ~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al 483 (594)
+.+.+..+++.|...+ ...|+.+++.+++
T Consensus 220 -~~~~~~~~~~~~~~~~-----------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 220 -SLRDALSLTDQAIASG-----------------DGQVSTQAVSAML 248 (250)
T ss_dssp -CHHHHHHHHHHHHTTT-----------------TSSBCHHHHHHHS
T ss_pred -CHHHHHHHHHHHHhcc-----------------CceecHHHHHHHh
Confidence 8889998888875221 1258888887765
No 63
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.61 E-value=3.8e-15 Score=152.32 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=138.2
Q ss_pred ccCcHHHHHHHHHHHHHcc---CCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcc
Q 007661 221 IGGLSAEFADIFRRAFASR---VFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKF 295 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~---~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~ 295 (594)
+.|.+..++.+ ..++... +.+| -++..++||+||||||||++|+++++.+. ..+++.++++.+....
T Consensus 19 i~G~~~~~~~l-~~~i~~~~~~~~~~-------~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 19 VVGQDEAIRAV-ADAIRRARAGLKDP-------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH 90 (311)
T ss_dssp CCSCHHHHHHH-HHHHHHHHHTCSCT-------TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTT
T ss_pred cCCHHHHHHHH-HHHHHHHhcCCCCC-------CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccc
Confidence 88999998888 4544332 1111 12345799999999999999999999874 2346778887654321
Q ss_pred -----c-------chhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc
Q 007661 296 -----V-------GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE 363 (594)
Q Consensus 296 -----~-------g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~ 363 (594)
. |... ...+..+....+ ..+|||||+|.+. ..+.+.|+..|+...
T Consensus 91 ~~~~l~g~~~~~~~~~~---~~~~~~~~~~~~-------~~vl~lDEi~~l~-------------~~~~~~Ll~~le~~~ 147 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEE---GGQLTEAVRRRP-------YSVILFDAIEKAH-------------PDVFNILLQMLDDGR 147 (311)
T ss_dssp HHHHHHCCCTTSTTTTT---CCHHHHHHHHCS-------SEEEEEETGGGSC-------------HHHHHHHHHHHHHSE
T ss_pred cHHHhcCCCCccccccc---cchHHHHHHhCC-------CeEEEEeChhhcC-------------HHHHHHHHHHHhcCE
Confidence 1 1110 012222222221 3599999999874 235556666665321
Q ss_pred ---------ccCcEEEEEeeCC--------------------------cccccHHhhCCCCccceeecCCCCHHHHHHHH
Q 007661 364 ---------SLNNVLLIGMTNR--------------------------KDMLDEALLRPGRLEVQVEISLPDENGRLQIL 408 (594)
Q Consensus 364 ---------~~~~v~vI~~tn~--------------------------~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL 408 (594)
...++++|++||. ...++++|.+ ||+..+.+++|+.+++.+|+
T Consensus 148 ~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~ 225 (311)
T 4fcw_A 148 LTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIV 225 (311)
T ss_dssp EECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHH
T ss_pred EEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHH
Confidence 1136789999998 4467888987 99999999999999999999
Q ss_pred HHHHhccccC------CCCCCcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcc
Q 007661 409 QIHTNKMKEN------SFLAPDVNLQELAARTK--NYSGAELEGVAKSAVSFALNRQL 458 (594)
Q Consensus 409 ~~~~~~~~~~------~~l~~~~~l~~la~~t~--g~sg~dl~~l~~~A~~~a~~r~~ 458 (594)
+.++++.... ....++..+..|+.... ..+.++|.++++.+...++.+.+
T Consensus 226 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 226 EIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 9877654211 01123445777888766 67889999999998887776544
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=3.5e-14 Score=149.03 Aligned_cols=230 Identities=20% Similarity=0.233 Sum_probs=151.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC-----CCCcEEE
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN-----GMEPKIV 286 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~-----~~~~~~v 286 (594)
+...+++ +.|.+++++.+ .+.+...+. -..+..++|+||||||||++++++++.+. ...++++
T Consensus 15 ~~~~p~~--~~gr~~e~~~l-~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 15 PDYIPDE--LPHREDQIRKI-ASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp SSCCCSC--CTTCHHHHHHH-HHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred CccCCCC--CCChHHHHHHH-HHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 4455566 99999999888 544432111 14566899999999999999999999873 3456677
Q ss_pred ecchhhh------c----------ccch-hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHH
Q 007661 287 NGPEVLS------K----------FVGE-TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (594)
Q Consensus 287 ~~~~l~~------~----------~~g~-~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (594)
++..... . ..+. .......+++..... ..|.+|+|||++.+....+ .
T Consensus 83 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vlilDE~~~l~~~~~---------~ 146 (386)
T 2qby_A 83 NTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY-------GSQVVIVLDEIDAFVKKYN---------D 146 (386)
T ss_dssp EHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC-------CSCEEEEEETHHHHHHSSC---------S
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc-------CCeEEEEEcChhhhhccCc---------C
Confidence 7654321 1 0111 222234444443322 1367999999999975421 2
Q ss_pred HHHHHHHHhhcCccccCcEEEEEeeCCcc---cccHHhhCCCCcc-ceeecCCCCHHHHHHHHHHHHhccccCCCCCCcc
Q 007661 350 SIVNQLLTKIDGVESLNNVLLIGMTNRKD---MLDEALLRPGRLE-VQVEISLPDENGRLQILQIHTNKMKENSFLAPDV 425 (594)
Q Consensus 350 ~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~---~ld~al~r~gRf~-~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~ 425 (594)
.++..|+..++.. ...++.+|++||.++ .+++.+.+ ||. ..+++++|+.++..+|++.++....... ..++.
T Consensus 147 ~~l~~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~~ 222 (386)
T 2qby_A 147 DILYKLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPG-VLPDN 222 (386)
T ss_dssp THHHHHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSS-CSCHH
T ss_pred HHHHHHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCC-CCCHH
Confidence 3566676666544 345789999999874 57788877 554 4899999999999999998776422111 22344
Q ss_pred cHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 426 NLQELAARTK---NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 426 ~l~~la~~t~---g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
.+..++..+. | +.+.+..+++.|...+... ....++.+++..++.+..
T Consensus 223 ~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~-------------~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 223 VIKLCAALAAREHG-DARRALDLLRVSGEIAERM-------------KDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHT-------------TCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHh
Confidence 5667777765 5 5667777888888766542 224588888888887663
No 65
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=1.8e-14 Score=151.68 Aligned_cols=220 Identities=21% Similarity=0.156 Sum_probs=147.4
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC----------CCCc
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN----------GMEP 283 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~----------~~~~ 283 (594)
..+++ +.|.+++++++ ...+...+. -..+.+++|+||||||||++|+++++.+. +..+
T Consensus 17 ~~p~~--l~gr~~~~~~l-~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 84 (384)
T 2qby_B 17 SVFKE--IPFREDILRDA-AIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQ 84 (384)
T ss_dssp HHCSS--CTTCHHHHHHH-HHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEE
T ss_pred cCCCC--CCChHHHHHHH-HHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceE
Confidence 33455 99999999988 555533221 24456899999999999999999998861 4556
Q ss_pred EEEecchhh-hcc-----------------cchh-HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCC
Q 007661 284 KIVNGPEVL-SKF-----------------VGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG 344 (594)
Q Consensus 284 ~~v~~~~l~-~~~-----------------~g~~-~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~ 344 (594)
+.+++.+.. +.+ .+.. ...+..+++.+... +.+|+|||+|.+.....
T Consensus 85 ~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~vlilDEi~~l~~~~~----- 150 (384)
T 2qby_B 85 AYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI---------RAIIYLDEVDTLVKRRG----- 150 (384)
T ss_dssp EEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS---------CEEEEEETTHHHHHSTT-----
T ss_pred EEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC---------CCEEEEECHHHhccCCC-----
Confidence 778876543 110 0111 22233333322221 22999999999974321
Q ss_pred CchHHHH-HHHHHHhhcCccccCcEEEEEeeCCc---ccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCC
Q 007661 345 TGVHDSI-VNQLLTKIDGVESLNNVLLIGMTNRK---DMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSF 420 (594)
Q Consensus 345 ~~~~~~~-v~~Ll~~ld~~~~~~~v~vI~~tn~~---~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~ 420 (594)
..+ +..|+... .++.+|++||.+ +.+++++++ ||...+++++|+.++..+|++.+++......
T Consensus 151 ----~~~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~- 217 (384)
T 2qby_B 151 ----GDIVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKG- 217 (384)
T ss_dssp ----SHHHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTT-
T ss_pred ----CceeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccC-
Confidence 223 55555543 689999999987 678999988 8877999999999999999998876311111
Q ss_pred CCCcccHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 421 LAPDVNLQELAARTKN--YSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 421 l~~~~~l~~la~~t~g--~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
..++..++.+++.+.+ -..+.+.++++.|...|. ....|+.+++..++.+..
T Consensus 218 ~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~---------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS---------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT---------------SSSCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc---------------CCCccCHHHHHHHHHHHh
Confidence 2334457788887762 245677778888876553 124578888888887763
No 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.60 E-value=5.8e-15 Score=153.51 Aligned_cols=228 Identities=20% Similarity=0.246 Sum_probs=136.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC------CCcEE
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG------MEPKI 285 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~------~~~~~ 285 (594)
+.++|++ |.|.+..++.+ ..+... ....++||+||||||||++|+++++.+.. .++
T Consensus 19 ~~~~f~~--i~G~~~~~~~l-~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~-- 80 (350)
T 1g8p_A 19 PVFPFSA--IVGQEDMKLAL-LLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV-- 80 (350)
T ss_dssp CCCCGGG--SCSCHHHHHHH-HHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT--
T ss_pred CCCCchh--ccChHHHHHHH-HHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccc--
Confidence 6778998 99998866554 322221 12346999999999999999999998752 111
Q ss_pred Eecchhh---------------------hcccchhHHHH------HHHHHHHHhhc-cccCCCCCcEEEEEccchhhhcc
Q 007661 286 VNGPEVL---------------------SKFVGETEKNI------RDLFADAENDQ-RTRGDQSDLHVIIFDEIDAICKS 337 (594)
Q Consensus 286 v~~~~l~---------------------~~~~g~~~~~i------~~lf~~a~~~~-~~~~~~~~~~Il~iDEid~l~~~ 337 (594)
++.... ....+.++..+ ...+....... +.......+.+|||||+|.+.+
T Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~- 158 (350)
T 1g8p_A 81 -SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED- 158 (350)
T ss_dssp -CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH-
T ss_pred -cccccccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH-
Confidence 111110 00011111111 11222221100 0000000145999999998742
Q ss_pred CCCCCCCCchHHHHHHHHHHhhcC----c-------cccCcEEEEEeeCCcc-cccHHhhCCCCccceeecCCC-CHHHH
Q 007661 338 RGSTRDGTGVHDSIVNQLLTKIDG----V-------ESLNNVLLIGMTNRKD-MLDEALLRPGRLEVQVEISLP-DENGR 404 (594)
Q Consensus 338 ~~~~~~~~~~~~~~v~~Ll~~ld~----~-------~~~~~v~vI~~tn~~~-~ld~al~r~gRf~~~i~i~~P-~~~~r 404 (594)
...+.|+..++. + ....++++|+++|..+ .++++|++ ||+..++++.| +.+++
T Consensus 159 ------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~ 224 (350)
T 1g8p_A 159 ------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETR 224 (350)
T ss_dssp ------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHH
T ss_pred ------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHH
Confidence 233445554442 1 1123789999999855 79999999 99988999999 67888
Q ss_pred HHHHHHHHhc---------------------------cccCCCCCCcccHHHHHHHcCCC---CHHHHHHHHHHHHHHHH
Q 007661 405 LQILQIHTNK---------------------------MKENSFLAPDVNLQELAARTKNY---SGAELEGVAKSAVSFAL 454 (594)
Q Consensus 405 ~~IL~~~~~~---------------------------~~~~~~l~~~~~l~~la~~t~g~---sg~dl~~l~~~A~~~a~ 454 (594)
.+|++.+++. .... ...++..++.|+....+. +.+.+.++++.|...|.
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~ 303 (350)
T 1g8p_A 225 VEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPK-VEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAA 303 (350)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGG-CBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 8888763211 0001 122344456666555432 56999999999887776
Q ss_pred HhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 455 NRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 455 ~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
.+ +...|+.+|+..++..+.
T Consensus 304 ~~-------------~~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 304 LE-------------GATAVGRDHLKRVATMAL 323 (350)
T ss_dssp HT-------------TCSBCCHHHHHHHHHHHH
T ss_pred Hc-------------CCCcCCHHHHHHHHHHHH
Confidence 43 123589999999888663
No 67
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.60 E-value=2.1e-14 Score=134.60 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=126.0
Q ss_pred ceeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCC-cEEEEEeeC--CCCCCCceeeCHhhhhccCccCC
Q 007661 12 VTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGD-SFVLSLASH--PSVNKGQIALNSVQRRHAKVSTG 88 (594)
Q Consensus 12 ~~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~-~~v~~~~~~--~~~~~~~i~~~~~~r~~~~~~~~ 88 (594)
+-+|+|..+.. .+.+++.||+||+.|.+|++. .|++|+|.|+ ..+..+|+. ++++.+.|+||+..|+|+|+.+|
T Consensus 6 ~i~L~V~~a~~-~D~gr~ivrl~p~~m~~Lgl~--~GD~V~I~G~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iG 82 (185)
T 1cz4_A 6 GIILRVAEANS-TDPGMSRVRLDESSRRLLDAE--IGDVVEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIG 82 (185)
T ss_dssp EEEEEEECCSS-CCCCSSEEEECHHHHHTTCCC--TTCEEEEESSSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTT
T ss_pred cEEEEEecCcc-cccCCCEEEECHHHHHHcCCC--CCCEEEEEcCCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCC
Confidence 46899999864 456899999999999999994 2499999875 477788874 67889999999999999999999
Q ss_pred CeEEEEEeCCCCcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhccCcccCCcEEEEEE---cCe-eEEEEEEEee
Q 007661 89 DHVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFINQVMTAGQRVVFEY---HGN-NYIFTVNGAA 164 (594)
Q Consensus 89 ~~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~-~~~~~v~~~~ 164 (594)
|.|+|++...+ ++..|+|..- ........+. ..+..+++..|.++++..|+.+.+.+ .|. .+.|+|.+++
T Consensus 83 D~V~V~~~~~~---~A~~V~l~P~--~~~~~~~~~~-~~~~~~l~~~l~~rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~ 156 (185)
T 1cz4_A 83 DKVKVRKVRTE---IAKKVTLAPI--IRKDQRLKFG-EGIEEYVQRALIRRPMLEQDNISVPGLTLAGQTGLLFKVVKTL 156 (185)
T ss_dssp CEEEEEEECCC---BCSEEEEEEE--CSTTCCSCCC-SSHHHHHHHHHTTCEECTTCEECCSSCCCSSCCCCEEEEEEES
T ss_pred CEEEEEECCCC---CccEEEEecc--cccccccccc-cchHHHHHHHHCCCcccCCCEEEEeeeccCCCeEEEEEEEEEc
Confidence 99999998754 4445555311 0000001122 22467888999999999999998876 777 8999999999
Q ss_pred ecCcccccccc-ceeEcCCcEEEEEec
Q 007661 165 VEGQEKSNALE-RGIITNETYFVFEAS 190 (594)
Q Consensus 165 ~~~~~~~~~~~-~~~~~~~t~~~~~~~ 190 (594)
| .. .++++++|.|.+...
T Consensus 157 P--------~~~~v~Vt~~T~I~i~~~ 175 (185)
T 1cz4_A 157 P--------SKVPVEIGEETKIEIREE 175 (185)
T ss_dssp S--------SSSCEECCTTCEEEECSC
T ss_pred C--------CCceEEEcCCeEEEECCc
Confidence 8 44 789999999998654
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.60 E-value=4.3e-15 Score=160.90 Aligned_cols=189 Identities=19% Similarity=0.288 Sum_probs=127.7
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh---------CCCCcEE
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML---------NGMEPKI 285 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l---------~~~~~~~ 285 (594)
.|++ |.|.+.+++.+ ...+.. ....++||+||||||||++|+++|+.+ .+..++.
T Consensus 178 ~ld~--iiGr~~~i~~l-~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 178 SLDP--VIGRSKEIQRV-IEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp CSCC--CCCCHHHHHHH-HHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCC--ccCcHHHHHHH-HHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 4666 99999999988 444322 234589999999999999999999997 2445566
Q ss_pred EecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcccc
Q 007661 286 VNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESL 365 (594)
Q Consensus 286 v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~ 365 (594)
+++. .+|.|+.+..++.+|+.+.... +.||||| +. ....+.|+..|+ .
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~--------~~iLfiD---------~~--------~~a~~~L~~~L~----~ 289 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAG--------NIILFID---------AA--------IDASNILKPSLA----R 289 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCC--------CCEEEEC---------C----------------CCCTT----S
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcC--------CeEEEEe---------Cc--------hhHHHHHHHhhc----C
Confidence 6666 7788888889999999998653 4599999 10 112233444443 4
Q ss_pred CcEEEEEeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccC-CCCCCcccHHHHHHHcCCCC-
Q 007661 366 NNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN-SFLAPDVNLQELAARTKNYS- 438 (594)
Q Consensus 366 ~~v~vI~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~-~~l~~~~~l~~la~~t~g~s- 438 (594)
+++.+|++||.++ .+|++++| ||. .|.|+.|+.+++.+||+.+..++... ....++..+..++..+.+|.
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~ 366 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 6899999999987 58999999 997 59999999999999999877664322 12234556777777665554
Q ss_pred ----HHHHHHHHHHHHHHHH
Q 007661 439 ----GAELEGVAKSAVSFAL 454 (594)
Q Consensus 439 ----g~dl~~l~~~A~~~a~ 454 (594)
+.....++.+|...+.
T Consensus 367 ~~~lp~~ai~ll~~a~~~~~ 386 (468)
T 3pxg_A 367 DRFLPDKAIDLIDEAGSKVR 386 (468)
T ss_dssp CSCTTHHHHHHHHHHHHHHH
T ss_pred cCcCCcHHHHHHHHHHHHHH
Confidence 3466677777775543
No 69
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.60 E-value=1.1e-14 Score=153.40 Aligned_cols=248 Identities=19% Similarity=0.232 Sum_probs=145.9
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhh-----------------hhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVT-----------------SKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEP 283 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~-----------------~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~ 283 (594)
|.|++..++.+ ..++.........- ..-...++.++||+||||||||++|+++|+.+ +.++
T Consensus 23 viGq~~ak~~l-~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l-~~~~ 100 (376)
T 1um8_A 23 VIGQEQAKKVF-SVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL-DIPI 100 (376)
T ss_dssp CCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-TCCE
T ss_pred ccCcHHHHHHH-HHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-CCCE
Confidence 89999998888 55553211111000 00112456789999999999999999999998 4667
Q ss_pred EEEecchhh-hcccchh-HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCc-hHHHHHHHHHHhhc
Q 007661 284 KIVNGPEVL-SKFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTG-VHDSIVNQLLTKID 360 (594)
Q Consensus 284 ~~v~~~~l~-~~~~g~~-~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~-~~~~~v~~Ll~~ld 360 (594)
+.+++..+. ..|.|.. +..+..++..+...... ..+.||||||+|.+.+.++......+ ....+.+.|+..|+
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le 176 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQK----AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVE 176 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHH----HTTSEEEEETGGGC--------------CHHHHHHHHHHHH
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhh----cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhh
Confidence 888888765 3555653 44455665543211000 01349999999999876433211111 11236778888887
Q ss_pred Ccc-------------------ccCcEEEEEeeCCccc------------------------------------------
Q 007661 361 GVE-------------------SLNNVLLIGMTNRKDM------------------------------------------ 379 (594)
Q Consensus 361 ~~~-------------------~~~~v~vI~~tn~~~~------------------------------------------ 379 (594)
+.. ...++++|+++|. +.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~-~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 255 (376)
T 1um8_A 177 GSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAF-DGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 255 (376)
T ss_dssp CCEEC---------------CEECTTCEEEEEECC-TTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred ccceecccccccccCCcceEEEecCCeEEEecCCH-HHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence 531 1256788888772 21
Q ss_pred ccHHhhCCCCccceeecCCCCHHHHHHHHHH----HHh----ccccC--CCCCCcccHHHHHHHcC--CCCHHHHHHHHH
Q 007661 380 LDEALLRPGRLEVQVEISLPDENGRLQILQI----HTN----KMKEN--SFLAPDVNLQELAARTK--NYSGAELEGVAK 447 (594)
Q Consensus 380 ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~----~~~----~~~~~--~~l~~~~~l~~la~~t~--g~sg~dl~~l~~ 447 (594)
+.+.|.+ |++..+.+++++.++..+|+.. +++ .+... ....++..+..|+.... ....++|.+++.
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le 333 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIE 333 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 4466666 8888899999999999999862 211 11000 01123445677777644 367899999999
Q ss_pred HHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 448 SAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 448 ~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
.+...++.+.... ......|+.+++..+.+
T Consensus 334 ~~~~~~~~~~~~~-------~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 334 DFCLDIMFDLPKL-------KGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHHHTGGGG-------TTSEEEECHHHHTTSSC
T ss_pred HHHHHHHhhccCC-------CCCEEEEeHHHhcCCCC
Confidence 9988877654321 12335688888765443
No 70
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.59 E-value=3.5e-14 Score=146.80 Aligned_cols=211 Identities=16% Similarity=0.201 Sum_probs=134.5
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc------hhhhc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP------EVLSK 294 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~------~l~~~ 294 (594)
|.|.+..++.+ ..++.. ..++||+||||||||++|+++++.+. ..+..+++. ++.+.
T Consensus 29 i~g~~~~~~~l-~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~-~~~~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 29 VVGQKYMINRL-LIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMD-LDFHRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp CCSCHHHHHHH-HHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCCHHHHHEE
T ss_pred eeCcHHHHHHH-HHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhC-CCeEEEecCCCCChhhcCCc
Confidence 88999888777 333321 25899999999999999999999984 456666653 12221
Q ss_pred ccchhHHHHHHHHHHHHhhc-cccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc---------cc
Q 007661 295 FVGETEKNIRDLFADAENDQ-RTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV---------ES 364 (594)
Q Consensus 295 ~~g~~~~~i~~lf~~a~~~~-~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~---------~~ 364 (594)
..... ..... ...+. ...+||||||+|.+.+ ...+.|+..|+.. ..
T Consensus 92 ~~~~~----------~~~~~~~~~g~-l~~~vl~iDEi~~~~~-------------~~~~~Ll~~l~~~~~~~~g~~~~~ 147 (331)
T 2r44_A 92 MIYNQ----------HKGNFEVKKGP-VFSNFILADEVNRSPA-------------KVQSALLECMQEKQVTIGDTTYPL 147 (331)
T ss_dssp EEEET----------TTTEEEEEECT-TCSSEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTEEEEC
T ss_pred eeecC----------CCCceEeccCc-ccccEEEEEccccCCH-------------HHHHHHHHHHhcCceeeCCEEEEC
Confidence 11000 00000 00000 0125999999998642 2344455555421 12
Q ss_pred cCcEEEEEeeCCcc-----cccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccC-------------------CC
Q 007661 365 LNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN-------------------SF 420 (594)
Q Consensus 365 ~~~v~vI~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~-------------------~~ 420 (594)
..++++|+++|+.+ .+++++++ ||...++++.|+.+++.+||+.++...... ..
T Consensus 148 ~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v 225 (331)
T 2r44_A 148 DNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKV 225 (331)
T ss_dssp CSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTC
T ss_pred CCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccC
Confidence 34688888888654 28999999 998889999999999999999887643211 00
Q ss_pred CCCcccHHHHHHHc-------------------CCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHH
Q 007661 421 LAPDVNLQELAART-------------------KNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLH 481 (594)
Q Consensus 421 l~~~~~l~~la~~t-------------------~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~ 481 (594)
..++..++.++... .|.+.+.+..+++.|...|.-+ +...|+.+|+.+
T Consensus 226 ~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-------------g~~~v~~~dv~~ 292 (331)
T 2r44_A 226 TISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-------------NRDYVLPEDIKE 292 (331)
T ss_dssp BCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-------------TCSBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc-------------CCCCCCHHHHHH
Confidence 11222244444322 2558888888888887766532 234589999999
Q ss_pred HHHhcc
Q 007661 482 ALYEIV 487 (594)
Q Consensus 482 al~~~~ 487 (594)
++..+.
T Consensus 293 ~~~~vl 298 (331)
T 2r44_A 293 VAYDIL 298 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988763
No 71
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.59 E-value=9.7e-18 Score=201.47 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=63.4
Q ss_pred ccccccccCcceeccchhhHHHHHHHHH----------HHHHHh------cC----------CCcceE--EEeecCCCCc
Q 007661 495 DDLERSRLNGMVDCGDRHKHIYQRAMLL----------VEQVKV------SK----------GSPLVT--CLLEGPSGSG 546 (594)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~------~~----------~~p~~g--vLL~GPpG~G 546 (594)
....|..++++.+.+..+.+...|++.+ .+.++. .+ ..+|+| +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 3466777777777776667777777643 112222 11 225566 9999999999
Q ss_pred hHHHHHHHHhhcCCC-----EEEEec--ccc-----------cccc----ccchhhhHHHHHHHhhhcC
Q 007661 547 KTALAATAGIDSDFP-----FVKIIS--AES-----------MIGL----HESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 547 KT~lAkalA~~~~~~-----fi~v~~--~e~-----------~vG~----sE~~~~~~ir~~F~~A~~~ 593 (594)
||+||+++|.++..+ ||++.. +++ |+|+ ||++ |+.+|.+||++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~----l~~~~~~ar~~ 1159 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQA----LEICDALARSG 1159 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHH----HHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHH----HHHHHHHHHhc
Confidence 999999999999877 888876 222 3677 8987 99999999875
No 72
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.59 E-value=1.8e-14 Score=148.39 Aligned_cols=193 Identities=16% Similarity=0.167 Sum_probs=130.9
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
-+|++ +.|.+..++.+ +.++.. -..+..+|++||||||||++|+++++.+ +..++.+++++.
T Consensus 23 ~~~~~--ivg~~~~~~~l-~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l-~~~~~~i~~~~~-- 84 (324)
T 3u61_B 23 STIDE--CILPAFDKETF-KSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDV-NADMMFVNGSDC-- 84 (324)
T ss_dssp CSTTT--SCCCHHHHHHH-HHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHT-TEEEEEEETTTC--
T ss_pred CCHHH--HhCcHHHHHHH-HHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHh-CCCEEEEccccc--
Confidence 46888 89999998887 666652 1344568888999999999999999998 456777887652
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEe
Q 007661 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGM 373 (594)
Q Consensus 294 ~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~ 373 (594)
+ ...+++.+.......+. ...+.+|||||+|.+.. ....+.|+..++.. ..++.+|++
T Consensus 85 ---~--~~~i~~~~~~~~~~~~~---~~~~~vliiDEi~~l~~------------~~~~~~L~~~le~~--~~~~~iI~~ 142 (324)
T 3u61_B 85 ---K--IDFVRGPLTNFASAASF---DGRQKVIVIDEFDRSGL------------AESQRHLRSFMEAY--SSNCSIIIT 142 (324)
T ss_dssp ---C--HHHHHTHHHHHHHBCCC---SSCEEEEEEESCCCGGG------------HHHHHHHHHHHHHH--GGGCEEEEE
T ss_pred ---C--HHHHHHHHHHHHhhccc---CCCCeEEEEECCcccCc------------HHHHHHHHHHHHhC--CCCcEEEEE
Confidence 1 34555555554433222 22467999999999851 12334455555432 257889999
Q ss_pred eCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccc----cCCCCCCc-ccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 374 TNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMK----ENSFLAPD-VNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 374 tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~----~~~~l~~~-~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
||+++.+++++++ |+. .++|+.|+.++|.+|++.+.+.+. ......++ ..+..++..+.| ..+++.+.++.
T Consensus 143 ~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~ 218 (324)
T 3u61_B 143 ANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDS 218 (324)
T ss_dssp ESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHH
T ss_pred eCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 9999999999998 775 799999999998887765543321 11112234 567888888766 44455555554
Q ss_pred HH
Q 007661 449 AV 450 (594)
Q Consensus 449 A~ 450 (594)
+.
T Consensus 219 ~~ 220 (324)
T 3u61_B 219 YS 220 (324)
T ss_dssp HG
T ss_pred Hh
Confidence 44
No 73
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=1.3e-14 Score=159.18 Aligned_cols=209 Identities=21% Similarity=0.241 Sum_probs=126.4
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHcc-CCChhhhhhcCCC---CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASR-VFPPHVTSKLGIK---HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~-~~~~~~~~~~g~~---~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~ 288 (594)
..+|++ +.|.+.+++++ ++++... ..++..++..|.. +++++||+||||||||++|+++|+++ +..++.+++
T Consensus 35 P~~~~d--liG~~~~~~~L-~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-~~~~i~in~ 110 (516)
T 1sxj_A 35 PTNLQQ--VCGNKGSVMKL-KNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-GYDILEQNA 110 (516)
T ss_dssp CSSGGG--CCSCHHHHHHH-HHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-TCEEEEECT
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-CCCEEEEeC
Confidence 347888 99999999988 6666542 1122333334433 66899999999999999999999998 567788888
Q ss_pred chhhhcccchhHH-------HHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC
Q 007661 289 PEVLSKFVGETEK-------NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG 361 (594)
Q Consensus 289 ~~l~~~~~g~~~~-------~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~ 361 (594)
+++...+..+... .+..+|..+... ......+.||||||+|.+.... ...++.|+..++.
T Consensus 111 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~vliIDEid~l~~~~----------~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 111 SDVRSKTLLNAGVKNALDNMSVVGYFKHNEEA---QNLNGKHFVIIMDEVDGMSGGD----------RGGVGQLAQFCRK 177 (516)
T ss_dssp TSCCCHHHHHHTGGGGTTBCCSTTTTTC-------CCSSTTSEEEEECSGGGCCTTS----------TTHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHhccccHHHHHhhhhhh---hhccCCCeEEEEECCCccchhh----------HHHHHHHHHHHHh
Confidence 8765543211100 011222222100 0112347799999999986421 1123444444432
Q ss_pred ccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHH
Q 007661 362 VESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 441 (594)
Q Consensus 362 ~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~d 441 (594)
....+++|+++.....+.+ ++ |+...+.|+.|+.+++.++|+..+.+... ..++..+..|++.+.| ..+.
T Consensus 178 --~~~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~---~i~~~~l~~la~~s~G-diR~ 247 (516)
T 1sxj_A 178 --TSTPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKF---KLDPNVIDRLIQTTRG-DIRQ 247 (516)
T ss_dssp --CSSCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTC---CCCTTHHHHHHHHTTT-CHHH
T ss_pred --cCCCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-cHHH
Confidence 1224555544433333443 44 44558999999999999999877654321 1234458889988865 4445
Q ss_pred HHHHHHH
Q 007661 442 LEGVAKS 448 (594)
Q Consensus 442 l~~l~~~ 448 (594)
+.++++.
T Consensus 248 ~i~~L~~ 254 (516)
T 1sxj_A 248 VINLLST 254 (516)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 4444443
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.56 E-value=1.7e-14 Score=135.32 Aligned_cols=153 Identities=19% Similarity=0.329 Sum_probs=108.6
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh---------CCCCcE
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML---------NGMEPK 284 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l---------~~~~~~ 284 (594)
-.|++ +.|.+.+++.+ .+.+.. ..+.++||+||||||||++|+++++.+ ....++
T Consensus 19 ~~~~~--~~g~~~~~~~l-~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 19 GKLDP--VIGRDTEIRRA-IQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp TCSCC--CCSCHHHHHHH-HHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred cccch--hhcchHHHHHH-HHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 35777 89999988888 343321 345689999999999999999999987 244566
Q ss_pred EEecchhhh--cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc
Q 007661 285 IVNGPEVLS--KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (594)
Q Consensus 285 ~v~~~~l~~--~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~ 362 (594)
.+++..+.. .+.+.....+..++..+.... .+.+|||||+|.+.+.+..... ...+.+.|...++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~vl~iDe~~~l~~~~~~~~~----~~~~~~~l~~~~~-- 149 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAE-------GQVVMFIDEIHTVVGAGAVAEG----ALDAGNILKPMLA-- 149 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTT-------TSEEEEETTGGGGSSSSSSCTT----SCCTHHHHHHHHH--
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcC-------CceEEEEeCHHHhccccccccc----chHHHHHHHHHHh--
Confidence 677776653 356677777888888776541 2569999999999765432111 1122333333333
Q ss_pred cccCcEEEEEeeCCcc-----cccHHhhCCCCccceeecCCCC
Q 007661 363 ESLNNVLLIGMTNRKD-----MLDEALLRPGRLEVQVEISLPD 400 (594)
Q Consensus 363 ~~~~~v~vI~~tn~~~-----~ld~al~r~gRf~~~i~i~~P~ 400 (594)
..++.+|+++|.++ .+++++++ ||.. ++++.|+
T Consensus 150 --~~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 150 --RGELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp --TTCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred --cCCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 25788999999876 58999999 9984 9999986
No 75
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.56 E-value=1.8e-13 Score=141.68 Aligned_cols=215 Identities=19% Similarity=0.291 Sum_probs=141.7
Q ss_pred ccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 215 NLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 215 ~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
+|++ +.|.+..++.+ ...+.... . .-.++.+++|+|||||||||+++++++.++ ..+...+++.+..
T Consensus 23 ~l~~--~~g~~~~~~~l-~~~i~~~~-------~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~-~~~~~~sg~~~~~- 89 (334)
T 1in4_A 23 SLDE--FIGQENVKKKL-SLALEAAK-------M-RGEVLDHVLLAGPPGLGKTTLAHIIASELQ-TNIHVTSGPVLVK- 89 (334)
T ss_dssp SGGG--CCSCHHHHHHH-HHHHHHHH-------H-HTCCCCCEEEESSTTSSHHHHHHHHHHHHT-CCEEEEETTTCCS-
T ss_pred cHHH--ccCcHHHHHHH-HHHHHHHH-------h-cCCCCCeEEEECCCCCcHHHHHHHHHHHhC-CCEEEEechHhcC-
Confidence 5676 67777777766 44442210 0 013456799999999999999999999985 3444555543321
Q ss_pred ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhc-------Ccc----
Q 007661 295 FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID-------GVE---- 363 (594)
Q Consensus 295 ~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld-------~~~---- 363 (594)
...+..++.... ..+|+||||++.+.+. ....+...+.... +..
T Consensus 90 -----~~~l~~~~~~~~----------~~~v~~iDE~~~l~~~----------~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 90 -----QGDMAAILTSLE----------RGDVLFIDEIHRLNKA----------VEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp -----HHHHHHHHHHCC----------TTCEEEEETGGGCCHH----------HHHHHHHHHHTSCCCC-----------
T ss_pred -----HHHHHHHHHHcc----------CCCEEEEcchhhcCHH----------HHHHHHHHHHhcccceeeccCcccccc
Confidence 122333332211 1349999999998531 1222222222110 000
Q ss_pred --ccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHH
Q 007661 364 --SLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAE 441 (594)
Q Consensus 364 --~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~d 441 (594)
....+.++++|+++..|++.+++ ||...+.+++|+.+++.+||+...+.... ..++..+..++.++.| +.++
T Consensus 145 ~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G-~~R~ 218 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRG-TPRI 218 (334)
T ss_dssp ----CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTT-CHHH
T ss_pred cccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCC-ChHH
Confidence 11247788899999999999999 99888999999999999999988765431 1234457889998887 5688
Q ss_pred HHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhc
Q 007661 442 LEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEI 486 (594)
Q Consensus 442 l~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~ 486 (594)
+.++++.+..+|..+. ...|+.+++.+++...
T Consensus 219 a~~ll~~~~~~a~~~~-------------~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 219 AIRLTKRVRDMLTVVK-------------ADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHHHHHHHT-------------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-------------CCCcCHHHHHHHHHHh
Confidence 9999998887775431 2357888888888765
No 76
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.56 E-value=4.1e-14 Score=177.93 Aligned_cols=319 Identities=16% Similarity=0.193 Sum_probs=175.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhc------cccCC--CCCcE
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQ------RTRGD--QSDLH 324 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~------~~~~~--~~~~~ 324 (594)
..+++||+||||||||++++.....+....++.++++.-.+ ...+...++..-... +..++ .....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 45689999999999998887776666555566677765433 344444454321111 00111 12346
Q ss_pred EEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC-------ccccCcEEEEEeeCCcc-----cccHHhhCCCCccc
Q 007661 325 VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-------VESLNNVLLIGMTNRKD-----MLDEALLRPGRLEV 392 (594)
Q Consensus 325 Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~-------~~~~~~v~vI~~tn~~~-----~ld~al~r~gRf~~ 392 (594)
|+||||++.-.+...+ ++..-.++.++++.-.- .....++.+|||+|+|. .|++++.| ||.
T Consensus 1377 VlFiDDiNmp~~D~yG----tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~- 1449 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYG----TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP- 1449 (3245)
T ss_dssp EEEETTTTCCCCCTTS----CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-
T ss_pred EEEecccCCCCccccc----cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-
Confidence 9999999974433222 23345566676654211 11234789999999984 49999999 776
Q ss_pred eeecCCCCHHHHHHHHHHHHhccccCCCCCCccc--HHHHH-----------HH-------cCCCCHHHHHHHHHHHHHH
Q 007661 393 QVEISLPDENGRLQILQIHTNKMKENSFLAPDVN--LQELA-----------AR-------TKNYSGAELEGVAKSAVSF 452 (594)
Q Consensus 393 ~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~--l~~la-----------~~-------t~g~sg~dl~~l~~~A~~~ 452 (594)
.+.++.|+.+....|+..+++.+... .+++. ...++ .. -.-|+.+|+..+++--...
T Consensus 1450 vi~i~~ps~esL~~If~til~~~l~~---~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRALMKL---LPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTTS---CGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 49999999999999988776543211 11110 01111 11 1246899998887754432
Q ss_pred HHHhc-cCcccC------------CC-CcccchhhcchhHHHHHHHhcccCCCcC--Ccccccccc-C-cceecc-chhh
Q 007661 453 ALNRQ-LSMDDL------------TK-PVDEESIKVTMDDFLHALYEIVPAFGAS--TDDLERSRL-N-GMVDCG-DRHK 513 (594)
Q Consensus 453 a~~r~-~~~~~~------------~~-~~~~~~~~vt~~df~~al~~~~ps~~~~--~~~~~~~~~-~-~~~~~~-~~~~ 513 (594)
..... .....+ .+ -.+.++.....+-+.+.+.+.-+..... ...+-.... . ....+. +.+.
T Consensus 1527 ~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~f~~~~Y~~v~~~~l~ 1606 (3245)
T 3vkg_A 1527 IQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPSVNLDALKRPILYSNWLTKDYQPVNRSDLR 1606 (3245)
T ss_dssp HHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCSSCC----CCCHHHHH
T ss_pred cCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcchhhhcccCcchhhhccccCccCCHHHHH
Confidence 11000 000000 00 0011111222222222333222211000 000000000 0 000000 0011
Q ss_pred -------------------HHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccccccc
Q 007661 514 -------------------HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGL 574 (594)
Q Consensus 514 -------------------~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~vG~ 574 (594)
.++..+..|+-++.+.-.+|.+++||+|.+||||++|+|..|..+|+.++.|.....| |.
T Consensus 1607 ~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k~Y-~~ 1685 (3245)
T 3vkg_A 1607 EYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNNNY-KS 1685 (3245)
T ss_dssp HHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC----C-CH
T ss_pred HHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeCCC-CH
Confidence 1123444555556666678999999999999999999999999999999999999988 55
Q ss_pred ccchhhhHHHHHHHhh
Q 007661 575 HESTKCAQIVKVSECQ 590 (594)
Q Consensus 575 sE~~~~~~ir~~F~~A 590 (594)
.|-.. .||+++.+|
T Consensus 1686 ~~f~e--DLk~l~~~a 1699 (3245)
T 3vkg_A 1686 SDFDD--DLRMLLKRA 1699 (3245)
T ss_dssp HHHHH--HHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH
Confidence 55443 499999987
No 77
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.55 E-value=3.3e-14 Score=163.21 Aligned_cols=202 Identities=16% Similarity=0.285 Sum_probs=138.7
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhh
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGI----KHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLS 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~ 293 (594)
.+.|.+..++.+ .+++.... .|. ++..++||+||||||||++|+++++.+ .+.+++.++++++..
T Consensus 492 ~viGq~~a~~~l-~~~i~~~~--------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~ 562 (758)
T 3pxi_A 492 RVIGQDEAVVAV-AKAVRRAR--------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYME 562 (758)
T ss_dssp TSCSCHHHHHHH-HHHHHHHT--------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCS
T ss_pred cCcChHHHHHHH-HHHHHHHH--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccc
Confidence 389999998888 45444321 122 222369999999999999999999997 346788999999988
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc---------c
Q 007661 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE---------S 364 (594)
Q Consensus 294 ~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~---------~ 364 (594)
.+... ...++....... ++||||||||.+. ..+.+.|+..|+.-. .
T Consensus 563 ~~~~~----~~~l~~~~~~~~--------~~vl~lDEi~~~~-------------~~~~~~Ll~~le~g~~~~~~g~~~~ 617 (758)
T 3pxi_A 563 KHSTS----GGQLTEKVRRKP--------YSVVLLDAIEKAH-------------PDVFNILLQVLEDGRLTDSKGRTVD 617 (758)
T ss_dssp SCCCC-------CHHHHHHCS--------SSEEEEECGGGSC-------------HHHHHHHHHHHHHSBCC-----CCB
T ss_pred ccccc----cchhhHHHHhCC--------CeEEEEeCccccC-------------HHHHHHHHHHhccCeEEcCCCCEec
Confidence 77654 112222333222 3499999999863 346666777776421 2
Q ss_pred cCcEEEEEeeCCccc------------ccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccC------CCCCCccc
Q 007661 365 LNNVLLIGMTNRKDM------------LDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN------SFLAPDVN 426 (594)
Q Consensus 365 ~~~v~vI~~tn~~~~------------ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~------~~l~~~~~ 426 (594)
..++++|+|||.+.. +.|.|++ ||+..|.|++|+.+++.+|++.+++.+... ....++..
T Consensus 618 ~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a 695 (758)
T 3pxi_A 618 FRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAA 695 (758)
T ss_dssp CTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHH
T ss_pred cCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHH
Confidence 347899999996543 6788887 999999999999999999999887654211 00123345
Q ss_pred HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHhc
Q 007661 427 LQELAAR--TKNYSGAELEGVAKSAVSFALNRQ 457 (594)
Q Consensus 427 l~~la~~--t~g~sg~dl~~l~~~A~~~a~~r~ 457 (594)
++.|++. ...++.++|+++++.+...++.+.
T Consensus 696 ~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 696 KAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp HHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHH
T ss_pred HHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 6777664 345677999999998887776554
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=2.8e-13 Score=142.58 Aligned_cols=228 Identities=12% Similarity=0.109 Sum_probs=151.7
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCc--eEEEEcCCCCcHHHHHHHHHHhhCC---CCcEEE
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVK--GMLLYGPPGTGKTLMARQIGKMLNG---MEPKIV 286 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--giLL~GppGtGKT~lar~ia~~l~~---~~~~~v 286 (594)
+.+.+++ +.|.+++++++ ...+...+. + ..+. +++|+||||||||++++++++.+.. ..++.+
T Consensus 12 ~~~~p~~--l~gr~~~~~~l-~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i 79 (389)
T 1fnn_A 12 PSYVPKR--LPHREQQLQQL-DILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 79 (389)
T ss_dssp TTCCCSC--CTTCHHHHHHH-HHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred CccCCCC--CCChHHHHHHH-HHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence 4445566 99999999988 555433211 1 2233 8999999999999999999999853 345667
Q ss_pred ecchhhhc------c----------cchhHHH-HHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHH
Q 007661 287 NGPEVLSK------F----------VGETEKN-IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHD 349 (594)
Q Consensus 287 ~~~~l~~~------~----------~g~~~~~-i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~ 349 (594)
+|....+. . .+..... ...+.+..... ..|.+|+|||+|.+. .
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~vlilDE~~~l~-------------~ 139 (389)
T 1fnn_A 80 NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER-------DLYMFLVLDDAFNLA-------------P 139 (389)
T ss_dssp ETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHT-------TCCEEEEEETGGGSC-------------H
T ss_pred eCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhc-------CCeEEEEEECccccc-------------h
Confidence 76543320 0 0111112 22222222211 236799999999871 2
Q ss_pred HHHHHHHHhhcCccc--cCcEEEEEeeCCc---ccccHHhhCCCCccc-eeecCCCCHHHHHHHHHHHHhccccCCCCCC
Q 007661 350 SIVNQLLTKIDGVES--LNNVLLIGMTNRK---DMLDEALLRPGRLEV-QVEISLPDENGRLQILQIHTNKMKENSFLAP 423 (594)
Q Consensus 350 ~~v~~Ll~~ld~~~~--~~~v~vI~~tn~~---~~ld~al~r~gRf~~-~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~ 423 (594)
..+..|+..++.... ..++.+|+++|.+ +.+++.+.+ ||.. .+.+++++.++..++++..+....... ..+
T Consensus 140 ~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~-~~~ 216 (389)
T 1fnn_A 140 DILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG-SYS 216 (389)
T ss_dssp HHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT-SSC
T ss_pred HHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC-CCC
Confidence 356667677665432 2488999999987 567888877 7764 799999999999999998876422111 234
Q ss_pred cccHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 424 DVNLQELAARTK--------NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 424 ~~~l~~la~~t~--------g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
+..+..+++.+. +-..+.+..+++.|...+..+. ...++.+++..++....
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~-------------~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 217 EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNG-------------RKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTT-------------CSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhC-------------CCCcCHHHHHHHHHHHh
Confidence 556788888884 2266888889999887776532 23578888888887764
No 79
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.51 E-value=5.3e-14 Score=140.65 Aligned_cols=201 Identities=18% Similarity=0.143 Sum_probs=113.0
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchh
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEV 291 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l 291 (594)
.+|++ +.|.+..++++++ .+.... ..+.++||+||||||||++|+++++.+. ..+++.++|+.+
T Consensus 3 ~~f~~--~ig~~~~~~~~~~-~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 3 EYKDN--LLGEANSFLEVLE-QVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp ---------CCCHHHHHHHH-HHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred ccccc--ceeCCHHHHHHHH-HHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 46777 8899888888743 332211 2346899999999999999999999874 246788998876
Q ss_pred hhcc-----cchhHHH-------HHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhh
Q 007661 292 LSKF-----VGETEKN-------IRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI 359 (594)
Q Consensus 292 ~~~~-----~g~~~~~-------i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~l 359 (594)
.... .|..... ....|+.+ ...+|||||+|.+.+ .....|+..+
T Consensus 69 ~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a-----------~~~~l~lDEi~~l~~-------------~~q~~Ll~~l 124 (265)
T 2bjv_A 69 NENLLDSELFGHEAGAFTGAQKRHPGRFERA-----------DGGTLFLDELATAPM-------------MVQEKLLRVI 124 (265)
T ss_dssp CHHHHHHHHHCCC---------CCCCHHHHT-----------TTSEEEEESGGGSCH-------------HHHHHHHHHH
T ss_pred ChhHHHHHhcCCcccccccccccccchhhhc-----------CCcEEEEechHhcCH-------------HHHHHHHHHH
Confidence 3321 1110000 00112211 124999999999852 2334455554
Q ss_pred cCc---------cccCcEEEEEeeCCc-c------cccHHhhCCCCccc-eeecCCCCH--HHHHHHHHHHHhccccCCC
Q 007661 360 DGV---------ESLNNVLLIGMTNRK-D------MLDEALLRPGRLEV-QVEISLPDE--NGRLQILQIHTNKMKENSF 420 (594)
Q Consensus 360 d~~---------~~~~~v~vI~~tn~~-~------~ld~al~r~gRf~~-~i~i~~P~~--~~r~~IL~~~~~~~~~~~~ 420 (594)
+.- ....++.+|++||.+ + .+++.|.+ ||.. .+.+|+.++ ++...+++.+++.......
T Consensus 125 ~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~ 202 (265)
T 2bjv_A 125 EYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIK 202 (265)
T ss_dssp HHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTT
T ss_pred HhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhC
Confidence 421 112468899999984 2 25677877 7753 455554433 3444555544443221100
Q ss_pred -----CCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 007661 421 -----LAPDVNLQELAARTKNYSGAELEGVAKSAVSFAL 454 (594)
Q Consensus 421 -----l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~ 454 (594)
..++..+..|.......+.++|.++++.+...+-
T Consensus 203 ~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~ 241 (265)
T 2bjv_A 203 LPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG 241 (265)
T ss_dssp CSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC
T ss_pred CCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC
Confidence 1223345556555444567899999999886654
No 80
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.51 E-value=1.8e-13 Score=157.16 Aligned_cols=202 Identities=20% Similarity=0.275 Sum_probs=139.2
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCC----CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc--
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIK----HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK-- 294 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~----~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~-- 294 (594)
+.|.+..++.+ ..++... ..|+. +..++||+||||||||++|+++++.+ +..++.++++++..+
T Consensus 460 v~g~~~~~~~l-~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l-~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 460 VFGQDKAIEAL-TEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GIELLRFDMSEYMERHT 529 (758)
T ss_dssp SCSCHHHHHHH-HHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH-TCEEEEEEGGGCSSSSC
T ss_pred ccCHHHHHHHH-HHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh-cCCEEEEechhhcchhh
Confidence 78888888777 4444321 22332 33479999999999999999999998 467888999888653
Q ss_pred ----------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc-
Q 007661 295 ----------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE- 363 (594)
Q Consensus 295 ----------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~- 363 (594)
|.|..+.. .+.+...... ++||||||+|.+. ..+++.|+..|+.-.
T Consensus 530 ~~~l~g~~~g~~g~~~~~--~l~~~~~~~~--------~~vl~lDEi~~~~-------------~~~~~~Ll~~le~~~~ 586 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGG--LLTDAVIKHP--------HAVLLLDEIEKAH-------------PDVFNILLQVMDNGTL 586 (758)
T ss_dssp CSSSCCCCSCSHHHHHTT--HHHHHHHHCS--------SEEEEEETGGGSC-------------HHHHHHHHHHHHHSEE
T ss_pred HhhhcCCCCCCcCccccc--hHHHHHHhCC--------CcEEEEeCccccC-------------HHHHHHHHHHhcCcEE
Confidence 44433221 1233333321 3599999999863 346677777776321
Q ss_pred --------ccCcEEEEEeeCCcc-------------------------cccHHhhCCCCccceeecCCCCHHHHHHHHHH
Q 007661 364 --------SLNNVLLIGMTNRKD-------------------------MLDEALLRPGRLEVQVEISLPDENGRLQILQI 410 (594)
Q Consensus 364 --------~~~~v~vI~~tn~~~-------------------------~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~ 410 (594)
...++++|+|||.+. .++|+|++ ||+..|.|++|+.+++.+|++.
T Consensus 587 ~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~ 664 (758)
T 1r6b_X 587 TDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDK 664 (758)
T ss_dssp EETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHH
T ss_pred EcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHH
Confidence 124688999999853 56788888 9999999999999999999998
Q ss_pred HHhcccc----CC--CCCCcccHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHhc
Q 007661 411 HTNKMKE----NS--FLAPDVNLQELAART--KNYSGAELEGVAKSAVSFALNRQ 457 (594)
Q Consensus 411 ~~~~~~~----~~--~l~~~~~l~~la~~t--~g~sg~dl~~l~~~A~~~a~~r~ 457 (594)
+++++.. .. ...++..++.|+... .++..+++..+++.+...++.+.
T Consensus 665 ~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~ 719 (758)
T 1r6b_X 665 FIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_dssp HHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 8764321 00 012334566777654 34568999999988887665443
No 81
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=5.8e-13 Score=138.40 Aligned_cols=216 Identities=16% Similarity=0.153 Sum_probs=137.8
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC-----CCcEEEe
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG-----MEPKIVN 287 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~-----~~~~~v~ 287 (594)
..+|++ +.|.+..++.+ ..++.. ..+.++||+||||||||++|+++++.+.+ ..+..++
T Consensus 33 p~~~~~--i~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 33 PKNLDE--VTAQDHAVTVL-KKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp CSSTTT--CCSCCTTHHHH-HHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCHHH--hhCCHHHHHHH-HHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 346787 89999988877 554421 11235999999999999999999998632 2455566
Q ss_pred cchhhhcccchhHHHHHHHHHHHHhhccc--------cCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhh
Q 007661 288 GPEVLSKFVGETEKNIRDLFADAENDQRT--------RGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKI 359 (594)
Q Consensus 288 ~~~l~~~~~g~~~~~i~~lf~~a~~~~~~--------~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~l 359 (594)
+++... ...+++.+......... ......+.||+|||+|.+.+ ...+.|+..|
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~-------------~~~~~Ll~~l 157 (353)
T 1sxj_D 97 ASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA-------------DAQSALRRTM 157 (353)
T ss_dssp SSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-------------HHHHHHHHHH
T ss_pred cccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-------------HHHHHHHHHH
Confidence 654321 12223322222211000 00112356999999999852 1234455555
Q ss_pred cCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCH
Q 007661 360 DGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSG 439 (594)
Q Consensus 360 d~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg 439 (594)
+.. ..+..+|.++|.++.+++++++ |+. .+++++|+.++..++++..++.... ..++..++.+++.+.| ..
T Consensus 158 e~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G-~~ 228 (353)
T 1sxj_D 158 ETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENV---KCDDGVLERILDISAG-DL 228 (353)
T ss_dssp HHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHTSS-CH
T ss_pred Hhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCC-CH
Confidence 532 2356777788999999999998 765 7999999999999999988764321 2345568889998886 56
Q ss_pred HHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 440 AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 440 ~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
+.+.++++.+...+-+.. ....|+.+|+..++.
T Consensus 229 r~~~~~l~~~~~~~~~~~------------~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 229 RRGITLLQSASKGAQYLG------------DGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHHHTHHHHHHHC------------SCCCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCc------------cCccccHHHHHHHhC
Confidence 666667766665443210 001467777776655
No 82
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.1e-12 Score=134.72 Aligned_cols=192 Identities=17% Similarity=0.183 Sum_probs=127.1
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC----CcEEEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~----~~~~v~~ 288 (594)
..+|++ +.|.+..++.+ +.++... ...++||+||||||||++|+++++.+.+. .+..+++
T Consensus 21 p~~~~~--~~g~~~~~~~l-~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 21 PQRLDD--IVGQEHIVKRL-KHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp CCSTTT--CCSCHHHHHHH-HHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred CCCHHH--hhCCHHHHHHH-HHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 346777 99999999888 5555321 22359999999999999999999987432 2445565
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcE
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
++..+ ...+++.+.......+.. ...+.+|+|||+|.+.+ ...+.|+..++. ...++
T Consensus 85 ~~~~~------~~~~~~~~~~~~~~~~~~--~~~~~vliiDe~~~l~~-------------~~~~~L~~~le~--~~~~~ 141 (327)
T 1iqp_A 85 SDERG------INVIREKVKEFARTKPIG--GASFKIIFLDEADALTQ-------------DAQQALRRTMEM--FSSNV 141 (327)
T ss_dssp TCHHH------HHTTHHHHHHHHHSCCGG--GCSCEEEEEETGGGSCH-------------HHHHHHHHHHHH--TTTTE
T ss_pred cccCc------hHHHHHHHHHHHhhCCcC--CCCCeEEEEeCCCcCCH-------------HHHHHHHHHHHh--cCCCC
Confidence 54321 112222222222222211 02356999999998742 233445555543 23578
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
.+|+++|.++.+++++.+ |+. .+++++|+.++..++++.+++.... ..++..+..++..+.| +.+.+.++++.
T Consensus 142 ~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g-~~r~~~~~l~~ 214 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEG-DMRRAINILQA 214 (327)
T ss_dssp EEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 888899999999999988 665 7999999999999999988765331 1234467788888866 56666666665
Q ss_pred HH
Q 007661 449 AV 450 (594)
Q Consensus 449 A~ 450 (594)
+.
T Consensus 215 ~~ 216 (327)
T 1iqp_A 215 AA 216 (327)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 83
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.47 E-value=1e-12 Score=134.36 Aligned_cols=192 Identities=17% Similarity=0.153 Sum_probs=127.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC----CcEEEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM----EPKIVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~----~~~~v~~ 288 (594)
..+|++ +.|.+..++.+ +..+.. ....++||+||||||||++|+++++.+.+. .++.+++
T Consensus 13 p~~~~~--~~g~~~~~~~l-~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 13 PRTLDE--VVGQDEVIQRL-KGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp CSSGGG--SCSCHHHHHHH-HTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred CCCHHH--HhCCHHHHHHH-HHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 346787 99999988877 443321 122349999999999999999999987322 3566776
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcE
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
++..+. ..+++.+.......+.. ...+.+|+|||+|.+.+ ...+.|+..++. ...++
T Consensus 77 ~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~vliiDe~~~l~~-------------~~~~~L~~~le~--~~~~~ 133 (319)
T 2chq_A 77 SDERGI------DVVRHKIKEFARTAPIG--GAPFKIIFLDEADALTA-------------DAQAALRRTMEM--YSKSC 133 (319)
T ss_dssp TSTTCT------TTSSHHHHHHHHSCCSS--SCCCEEEEEETGGGSCH-------------HHHHTTGGGTSS--SSSSE
T ss_pred ccccCh------HHHHHHHHHHHhcCCCC--CCCceEEEEeCCCcCCH-------------HHHHHHHHHHHh--cCCCC
Confidence 654221 11222222222121111 12367999999998742 234556666654 23578
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
.+|++||.++.+++++.+ |+. .+++++|+.+++.++++.++++... ..++..+..++..+.| +.+.+.++++.
T Consensus 134 ~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G-~~r~~~~~l~~ 206 (319)
T 2chq_A 134 RFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGG-DFRKAINALQG 206 (319)
T ss_dssp EEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred eEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 899999999999999998 665 8999999999999999988775431 1234457788877655 55566555555
Q ss_pred HH
Q 007661 449 AV 450 (594)
Q Consensus 449 A~ 450 (594)
+.
T Consensus 207 ~~ 208 (319)
T 2chq_A 207 AA 208 (319)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 84
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.47 E-value=2.3e-13 Score=147.34 Aligned_cols=200 Identities=19% Similarity=0.207 Sum_probs=116.2
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCC-CcEEEec-----chhhh
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGM-EPKIVNG-----PEVLS 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~-~~~~v~~-----~~l~~ 293 (594)
.|.|.+..++.++. ++. ...++||+||||||||++|+++++.+... ++..+++ +++++
T Consensus 23 ~ivGq~~~i~~l~~-al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 23 GLYERSHAIRLCLL-AAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TCSSCHHHHHHHHH-HHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhHHHHHHHHHHHH-HHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 38899888877733 221 12489999999999999999999987432 2233333 23333
Q ss_pred cccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc--------ccc
Q 007661 294 KFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV--------ESL 365 (594)
Q Consensus 294 ~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~--------~~~ 365 (594)
.+.+..... ...|..+... .-..++|||||||+.+. ..+.+.|+..|+.- ...
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g-----~l~~~~IL~IDEI~r~~-------------~~~q~~LL~~lee~~v~i~G~~~~~ 147 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSG-----YLPEAEIVFLDEIWKAG-------------PAILNTLLTAINERQFRNGAHVEKI 147 (500)
T ss_dssp CBC-----------CBCCTT-----SGGGCSEEEEESGGGCC-------------HHHHHHHHHHHHSSEEECSSSEEEC
T ss_pred cccHHHHhh-chhHHhhhcc-----CCCcceeeeHHhHhhhc-------------HHHHHHHHHHHHHHhccCCCCcCCc
Confidence 222221111 1112111111 10125699999998753 34556677777521 111
Q ss_pred CcEEEEEeeCCccc---ccHHhhCCCCccceeecCCCCH-HHHHHHHHHHHhccccC--------------------CCC
Q 007661 366 NNVLLIGMTNRKDM---LDEALLRPGRLEVQVEISLPDE-NGRLQILQIHTNKMKEN--------------------SFL 421 (594)
Q Consensus 366 ~~v~vI~~tn~~~~---ld~al~r~gRf~~~i~i~~P~~-~~r~~IL~~~~~~~~~~--------------------~~l 421 (594)
+..++|++||++.. ..+++.+ ||...++++.|+. +++.+|++.+....... ...
T Consensus 148 ~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~ 225 (500)
T 3nbx_X 148 PMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEIT 225 (500)
T ss_dssp CCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCB
T ss_pred chhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCccc
Confidence 22346788886432 4468888 9999999999986 78889987543211100 001
Q ss_pred CCcccHHHHHHHc---------CCCCHHHHHHHHHHHHHHHHHh
Q 007661 422 APDVNLQELAART---------KNYSGAELEGVAKSAVSFALNR 456 (594)
Q Consensus 422 ~~~~~l~~la~~t---------~g~sg~dl~~l~~~A~~~a~~r 456 (594)
.++.-++.++... .|.+.+.+..+++.|...|.-+
T Consensus 226 v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~ 269 (500)
T 3nbx_X 226 LPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFS 269 (500)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhc
Confidence 1222234444433 4788999999998887777643
No 85
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.46 E-value=1.1e-12 Score=164.55 Aligned_cols=170 Identities=18% Similarity=0.253 Sum_probs=106.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDA 333 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~ 333 (594)
..|++++||+|||||++++++|+.+ +.+++.++|++-++ ...+..+|..+... .++++|||++.
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~l-g~~~v~~nc~e~ld------~~~lg~~~~g~~~~---------Gaw~~~DE~nr 708 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNL-GRVVVVFNCDDSFD------YQVLSRLLVGITQI---------GAWGCFDEFNR 708 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTT-TCCCEEEETTSSCC------HHHHHHHHHHHHHH---------TCEEEEETTTS
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHh-CCcEEEEECCCCCC------hhHhhHHHHHHHhc---------CCEeeehhhhh
Confidence 3589999999999999999999998 67888999987654 24556777766654 34999999998
Q ss_pred hhccCCCCCCCCchHHHHHHHHH---Hhhc---------C--ccccCcEEEEEeeCC----cccccHHhhCCCCccceee
Q 007661 334 ICKSRGSTRDGTGVHDSIVNQLL---TKID---------G--VESLNNVLLIGMTNR----KDMLDEALLRPGRLEVQVE 395 (594)
Q Consensus 334 l~~~~~~~~~~~~~~~~~v~~Ll---~~ld---------~--~~~~~~v~vI~~tn~----~~~ld~al~r~gRf~~~i~ 395 (594)
+-+ ++...+..++. ..+. | +.-..++.|++|.|+ ...|++++++ || +.+.
T Consensus 709 ~~~---------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~ 776 (2695)
T 4akg_A 709 LDE---------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFS 776 (2695)
T ss_dssp SCH---------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEE
T ss_pred cCh---------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEE
Confidence 743 22222222222 2111 1 122345778888884 3458999998 55 3799
Q ss_pred cCCCCHHHHHHHHHHHHhccccCCCCCC-cccHHHH-HHHc-----CCCCHHHHHHHHHHHHHH
Q 007661 396 ISLPDENGRLQILQIHTNKMKENSFLAP-DVNLQEL-AART-----KNYSGAELEGVAKSAVSF 452 (594)
Q Consensus 396 i~~P~~~~r~~IL~~~~~~~~~~~~l~~-~~~l~~l-a~~t-----~g~sg~dl~~l~~~A~~~ 452 (594)
+..||.+...+|+-... .......+.. -+.+-.+ .+.. ..|.-+.+..+.+.|...
T Consensus 777 m~~Pd~~~i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 777 MKSPQSGTIAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp CCCCCHHHHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred eeCCCHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 99999998888853221 1110000000 0111112 2222 236889998888877643
No 86
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.45 E-value=1.9e-12 Score=132.57 Aligned_cols=193 Identities=15% Similarity=0.119 Sum_probs=127.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCC----CCcEEEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNG----MEPKIVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~----~~~~~v~~ 288 (594)
..+|++ +.|.+..++.+ +.++... ..+ ++||+||||+|||++|+++++.+.+ ..+..+++
T Consensus 17 p~~~~~--~~g~~~~~~~l-~~~l~~~------------~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 17 PQVLSD--IVGNKETIDRL-QQIAKDG------------NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp CSSGGG--CCSCTHHHHHH-HHHHHSC------------CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred CCCHHH--HHCCHHHHHHH-HHHHHcC------------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 345777 89999998888 6655321 222 3999999999999999999998632 22445565
Q ss_pred chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcE
Q 007661 289 PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNV 368 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v 368 (594)
++.. ....++++++......... ....+.+|+|||+|.+.. ...+.|+..++. ...++
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~-~~~~~~viiiDe~~~l~~-------------~~~~~L~~~le~--~~~~~ 138 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHL-PPGKHKIVILDEADSMTA-------------GAQQALRRTMEL--YSNST 138 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCC-CTTCCEEEEEESGGGSCH-------------HHHHTTHHHHHH--TTTTE
T ss_pred cccc------ChHHHHHHHHHHHhccccC-CCCCceEEEEECcccCCH-------------HHHHHHHHHHhc--cCCCc
Confidence 4421 2345566665554211110 012367999999999752 123334444442 23578
Q ss_pred EEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 369 LLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 369 ~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
.+|++||.++.+.+.+++ |+. .+++++|+.+++.++++.+++.... ..++..+..+++.+.| +.+.+.++++.
T Consensus 139 ~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G-~~r~a~~~l~~ 211 (323)
T 1sxj_B 139 RFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEG-DMRQAINNLQS 211 (323)
T ss_dssp EEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred eEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 888899999999999998 554 8999999999999999988765321 1234467888888876 45555555554
Q ss_pred HH
Q 007661 449 AV 450 (594)
Q Consensus 449 A~ 450 (594)
+.
T Consensus 212 ~~ 213 (323)
T 1sxj_B 212 TV 213 (323)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 87
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=2.3e-12 Score=134.99 Aligned_cols=192 Identities=19% Similarity=0.228 Sum_probs=131.7
Q ss_pred cccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC-----------
Q 007661 214 FNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME----------- 282 (594)
Q Consensus 214 ~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~----------- 282 (594)
.+|++ +.|.+.+++.+ +.++... +.+..+||+||||||||++|+++++.+.+..
T Consensus 13 ~~~~~--~vg~~~~~~~L-~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 13 QTFAD--VVGQEHVLTAL-ANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp CSTTT--SCSCHHHHHHH-HHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred Cchhh--ccCcHHHHHHH-HHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 35777 99999999888 6655321 2334789999999999999999999885422
Q ss_pred ------------cEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHH
Q 007661 283 ------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDS 350 (594)
Q Consensus 283 ------------~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~ 350 (594)
+..+++.. ......++++++.+... +. ...+.||+|||+|.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~-~~---~~~~~vliiDe~~~l~-------------~~ 134 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYA-PA---RGRFKVYLIDEVHMLS-------------RH 134 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSC-CS---SSSSEEEEEECGGGSC-------------HH
T ss_pred HHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhc-cc---cCCeEEEEEECcchhc-------------HH
Confidence 11111110 01122355666655432 11 2235699999999874 12
Q ss_pred HHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHH
Q 007661 351 IVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (594)
Q Consensus 351 ~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~l 430 (594)
..+.|+..++. ...++++|++|+.++.+.+.+++ |+ ..+++++|+.++..++++.+++.... ..++..+..+
T Consensus 135 ~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l 206 (373)
T 1jr3_A 135 SFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLL 206 (373)
T ss_dssp HHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHH
T ss_pred HHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHH
Confidence 34556666654 34578899999999899999988 54 58999999999999999988765431 1233457788
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 007661 431 AARTKNYSGAELEGVAKSAVSF 452 (594)
Q Consensus 431 a~~t~g~sg~dl~~l~~~A~~~ 452 (594)
++.+.| +.+++.++++.+..+
T Consensus 207 ~~~~~G-~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 207 ARAAEG-SLRDALSLTDQAIAS 227 (373)
T ss_dssp HHHSSS-CHHHHHHHHHHHHHH
T ss_pred HHHCCC-CHHHHHHHHHHHHHh
Confidence 888876 778888888777543
No 88
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.43 E-value=4e-13 Score=137.16 Aligned_cols=194 Identities=21% Similarity=0.220 Sum_probs=116.9
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcc---
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKF--- 295 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~--- 295 (594)
|.|.+..+++++. .+... ...+.+|||+||||||||++|+++++... ..+++.++|+.+....
T Consensus 4 iig~s~~~~~~~~-~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 4 MIGSSPAMQHLLN-EIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCSHHHHHHHH-HHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred cEECCHHHHHHHH-HHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 7888888888843 33221 13456899999999999999999999763 3567788987664321
Q ss_pred --cc--------hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc--
Q 007661 296 --VG--------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE-- 363 (594)
Q Consensus 296 --~g--------~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~-- 363 (594)
.| ... .....|+.+.. .+|||||++.+.. .....|+..++...
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a~~-----------g~L~LDEi~~l~~-------------~~q~~Ll~~l~~~~~~ 126 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEADG-----------GTLFLDEIGDISP-------------LMQVRLLRAIQEREVQ 126 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHHTT-----------SEEEEESCTTCCH-------------HHHHHHHHHHHSSBCC
T ss_pred HhcCccccccCchhh-hhcCHHHhcCC-----------CEEEEeccccCCH-------------HHHHHHHHHHhcCEee
Confidence 11 110 11233444432 2999999999852 23445666555322
Q ss_pred -------ccCcEEEEEeeCCc--c-----cccHHhhCCCCcc-ceeecCCCC--HHHHHHHHHHHHhcccc----CCCCC
Q 007661 364 -------SLNNVLLIGMTNRK--D-----MLDEALLRPGRLE-VQVEISLPD--ENGRLQILQIHTNKMKE----NSFLA 422 (594)
Q Consensus 364 -------~~~~v~vI~~tn~~--~-----~ld~al~r~gRf~-~~i~i~~P~--~~~r~~IL~~~~~~~~~----~~~l~ 422 (594)
...++.+|++||++ + .+++.|.. ||. ..|.+|+.. .++...+++.+++.... .....
T Consensus 127 ~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~ 204 (304)
T 1ojl_A 127 RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGF 204 (304)
T ss_dssp BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCC
Confidence 12468999999985 1 13455555 654 234444443 34445566655544321 11112
Q ss_pred CcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 423 PDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 423 ~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
++..+..|......-+.++|.++++.|...+
T Consensus 205 s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 205 TPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 3334666766654456789999999988654
No 89
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.41 E-value=4.5e-13 Score=134.48 Aligned_cols=114 Identities=40% Similarity=0.679 Sum_probs=85.6
Q ss_pred HHHHHhcccCCCcCCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 480 LHALYEIVPAFGASTDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 480 ~~al~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
..+..+++|.|+.+.+.+......+++.+...+.+++.......+.+......++.++||+||||||||++|+++|.+.+
T Consensus 10 ~~~~~~~~~~fg~~~~~l~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 10 HGSTMDIKPAFGTNQEDYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp ---------------CCSTTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCccccCCCCCCCHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56778899999999888887777778877777777877766677777777778899999999999999999999999999
Q ss_pred CCEEEEeccccccccccchhhhHHHHHHHhhhcC
Q 007661 560 FPFVKIISAESMIGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 560 ~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
.+|+.++.|+.++|+++..+...++++|+.|+++
T Consensus 90 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 123 (272)
T 1d2n_A 90 FPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS 123 (272)
T ss_dssp CSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhc
Confidence 9999999999999998877777899999998753
No 90
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.40 E-value=7.5e-13 Score=153.69 Aligned_cols=204 Identities=22% Similarity=0.312 Sum_probs=137.1
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhc
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGI----KHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSK 294 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~----~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~ 294 (594)
|.|.+..++.+ ..++.... .|+ ++..++||+||||||||++|+++++.+. ..+++.++|+++...
T Consensus 560 viG~~~a~~~l-~~~i~~~~--------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 560 VVGQDEAIRAV-ADAIRRAR--------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 630 (854)
T ss_dssp SCSCHHHHHHH-HHHHHHHG--------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSS
T ss_pred cCCcHHHHHHH-HHHHHHHh--------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccch
Confidence 88999988888 44443211 121 2335899999999999999999999883 346788998877653
Q ss_pred ------------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc
Q 007661 295 ------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV 362 (594)
Q Consensus 295 ------------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~ 362 (594)
|+|..+ ...+....... + +++|||||+|.+. ..+++.|+..|+.-
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~-~-------~~vl~lDEi~~l~-------------~~~~~~Ll~~l~~~ 687 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVRRR-P-------YSVILFDEIEKAH-------------PDVFNILLQILDDG 687 (854)
T ss_dssp GGGGGC----------------CHHHHHHHC-S-------SEEEEESSGGGSC-------------HHHHHHHHHHHTTT
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHHhC-C-------CeEEEEecccccC-------------HHHHHHHHHHhccC
Confidence 222222 12222223222 1 3599999999863 34677788888743
Q ss_pred c---------ccCcEEEEEeeCCc--------------------------ccccHHhhCCCCccceeecCCCCHHHHHHH
Q 007661 363 E---------SLNNVLLIGMTNRK--------------------------DMLDEALLRPGRLEVQVEISLPDENGRLQI 407 (594)
Q Consensus 363 ~---------~~~~v~vI~~tn~~--------------------------~~ld~al~r~gRf~~~i~i~~P~~~~r~~I 407 (594)
. ...++++|+|||.. ..+.|.|.. |++..+.+.+|+.+++..|
T Consensus 688 ~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i 765 (854)
T 1qvr_A 688 RLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQI 765 (854)
T ss_dssp EECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHH
T ss_pred ceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHH
Confidence 2 12478899999972 123566665 8988999999999999999
Q ss_pred HHHHHhccccC----C--CCCCcccHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcc
Q 007661 408 LQIHTNKMKEN----S--FLAPDVNLQELAARTK--NYSGAELEGVAKSAVSFALNRQL 458 (594)
Q Consensus 408 L~~~~~~~~~~----~--~l~~~~~l~~la~~t~--g~sg~dl~~l~~~A~~~a~~r~~ 458 (594)
++.+++.+... . ...++..++.|+.... .++.++|.++++.+...++.+.+
T Consensus 766 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 766 VEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99887643211 0 0123445777888766 67889999999998887776543
No 91
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.39 E-value=2.2e-13 Score=138.98 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=86.0
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+.+.|..+.|.......+.+.+.++..+++.+...+..++.++|||||||||||+||+++|.+++.+|+.+++++++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~ 88 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 88 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh
Confidence 455677788888888888888888888888888888999999999999999999999999999999999999999984
Q ss_pred -cccccchhhhHHHHHHHhhhcC
Q 007661 572 -IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|+++++ ++.+|+.|+..
T Consensus 89 ~~g~~~~~----~~~~f~~a~~~ 107 (301)
T 3cf0_A 89 WFGESEAN----VREIFDKARQA 107 (301)
T ss_dssp HHTTCTTH----HHHHHHHHHHT
T ss_pred hcCchHHH----HHHHHHHHHhc
Confidence 8999987 99999999753
No 92
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.39 E-value=3.3e-13 Score=162.56 Aligned_cols=154 Identities=20% Similarity=0.254 Sum_probs=114.0
Q ss_pred CccccccCCccCcHHHHHHHHHHHHHccCCC----------hhhhhh------cCCC----------CCce--EEEEcCC
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAFASRVFP----------PHVTSK------LGIK----------HVKG--MLLYGPP 263 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~~~~~~~----------~~~~~~------~g~~----------~~~g--iLL~Gpp 263 (594)
+...|++ |||++..++++ .++...++.+ ++.++. .|+. +|+| +||||||
T Consensus 1015 ~~~~~~~--~~~~~~~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~ 1091 (1706)
T 3cmw_A 1015 SGSSTGS--MSAIDENKQKA-LAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPE 1091 (1706)
T ss_dssp -----------CTTHHHHHH-HHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECST
T ss_pred CCceeee--cCCccHHHHHH-HHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCC
Confidence 5678998 99999999988 7788888733 566666 4444 5566 9999999
Q ss_pred CCcHHHHHHHHHHhh--CCCCcEEEecchhh------------hcccch----hHHHHHHHHHHHHhhccccCCCCCcEE
Q 007661 264 GTGKTLMARQIGKML--NGMEPKIVNGPEVL------------SKFVGE----TEKNIRDLFADAENDQRTRGDQSDLHV 325 (594)
Q Consensus 264 GtGKT~lar~ia~~l--~~~~~~~v~~~~l~------------~~~~g~----~~~~i~~lf~~a~~~~~~~~~~~~~~I 325 (594)
|||||++|++++.+. ++.+..+|+..+.+ ++|+++ +|+.++.+|..|+... |++
T Consensus 1092 g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~--------~~~ 1163 (1706)
T 3cmw_A 1092 SSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA--------VDV 1163 (1706)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC--------CSE
T ss_pred CCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC--------CeE
Confidence 999999999999765 34556667766544 677788 8999999999888765 569
Q ss_pred EEEccchhhhccCC---CCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 326 IIFDEIDAICKSRG---STRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 326 l~iDEid~l~~~~~---~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
||+|++|+|+|.++ ...+ ..+...++++|+|+.|+++....+|+|| +||+.
T Consensus 1164 i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1164 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred EEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 99999999999842 2221 2367788999999999999888899888 77774
No 93
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=136.33 Aligned_cols=95 Identities=20% Similarity=0.267 Sum_probs=79.4
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+.+.|.+++|+.+.+..+.+.+.++....+.+...+..++.|+||+||||||||+||+++|.+.+.+|+.++++++.
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 456778888999888888888888888888899999999999999999999999999999999999999999999884
Q ss_pred -cccccchhhhHHHHHHHhhhc
Q 007661 572 -IGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~ 592 (594)
+|+++++ |+.+|+.|+.
T Consensus 84 ~~~~~~~~----i~~vf~~a~~ 101 (274)
T 2x8a_A 84 YVGESERA----VRQVFQRAKN 101 (274)
T ss_dssp TTHHHHHH----HHHHHHHHHH
T ss_pred hhhHHHHH----HHHHHHHHHh
Confidence 8888876 9999999854
No 94
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=1e-11 Score=129.15 Aligned_cols=199 Identities=14% Similarity=0.142 Sum_probs=124.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC----------
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME---------- 282 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~---------- 282 (594)
..+|++ +.|.+..++.+ +.++. .. + +.+ +++|+||+||||||+++++++.+.+..
T Consensus 10 P~~~~~--~vg~~~~~~~l-~~~~~---~~-------~-~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 10 PKSLNA--LSHNEELTNFL-KSLSD---QP-------R-DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp CCSGGG--CCSCHHHHHHH-HTTTT---CT-------T-CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred CCCHHH--hcCCHHHHHHH-HHHHh---hC-------C-CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 346787 88999887766 44320 11 1 223 399999999999999999999652211
Q ss_pred ------------------cEEEecchhhhcccchhHHHHHHHHHHHHhhcccc------CCCCCcEEEEEccchhhhccC
Q 007661 283 ------------------PKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTR------GDQSDLHVIIFDEIDAICKSR 338 (594)
Q Consensus 283 ------------------~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~------~~~~~~~Il~iDEid~l~~~~ 338 (594)
...++..+. .......+++.++.+....+.. +-...|.+|+|||++.+-+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-- 148 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDM----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-- 148 (354)
T ss_dssp -----------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH--
T ss_pred ecccccccceeeeecccceEEecHhhc----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH--
Confidence 011111110 0001113555555554322210 1123577999999998531
Q ss_pred CCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccC
Q 007661 339 GSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKEN 418 (594)
Q Consensus 339 ~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~ 418 (594)
...+.|+..++.. ..+..+|.+||.++.+.+.+++ |+ ..++|++|+.+++.++|+..+++...
T Consensus 149 -----------~~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~- 211 (354)
T 1sxj_E 149 -----------DAQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERI- 211 (354)
T ss_dssp -----------HHHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred -----------HHHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence 1233444444432 2467888899999999999998 66 58999999999999999988765331
Q ss_pred CCCCC-cccHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 007661 419 SFLAP-DVNLQELAARTKNYSGAELEGVAKSAVSF 452 (594)
Q Consensus 419 ~~l~~-~~~l~~la~~t~g~sg~dl~~l~~~A~~~ 452 (594)
..+ +..+..+++.+.| +.+++.++++.+...
T Consensus 212 --~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 212 --QLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp --EECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred --CCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 123 4567888888866 677777777766644
No 95
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.37 E-value=2.3e-13 Score=140.18 Aligned_cols=95 Identities=20% Similarity=0.302 Sum_probs=80.2
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc-CCCEEEEeccccc-
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS-DFPFVKIISAESM- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~-~~~fi~v~~~e~~- 571 (594)
.+.+.|.++.|.......+.+.+.++..+.+.+. ....|+.++|||||||||||+||+++|+++ +.+|+.+++++++
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~-~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSC-TTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHh-CCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 4567788888888887777777777776666554 246788999999999999999999999999 9999999999985
Q ss_pred --cccccchhhhHHHHHHHhhhcC
Q 007661 572 --IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 --vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|++|+. ++++|+.|+..
T Consensus 85 ~~~g~~~~~----~~~lf~~a~~~ 104 (322)
T 1xwi_A 85 KWLGESEKL----VKNLFQLAREN 104 (322)
T ss_dssp SSCCSCHHH----HHHHHHHHHHT
T ss_pred hhhhHHHHH----HHHHHHHHHhc
Confidence 8999987 99999999754
No 96
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.34 E-value=4.8e-13 Score=148.58 Aligned_cols=222 Identities=17% Similarity=0.143 Sum_probs=128.1
Q ss_pred CccCcHHHHHHHHHHHHHccCCCh--hhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE---Eecchhhhc
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPP--HVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI---VNGPEVLSK 294 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~--~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~---v~~~~l~~~ 294 (594)
.|.|.+..++.+ ...+... .......++...++||+||||||||++|+++++.+....+.. .++.++...
T Consensus 296 ~I~G~e~vk~al-----~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~ 370 (595)
T 3f9v_A 296 SIYGHWELKEAL-----ALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAA 370 (595)
T ss_dssp TTSCCHHHHHHH-----TTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEE
T ss_pred hhcChHHHHHHH-----HHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccce
Confidence 388998866554 2222110 000001223444899999999999999999999874221110 122222221
Q ss_pred cc-----chhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCcc------
Q 007661 295 FV-----GETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVE------ 363 (594)
Q Consensus 295 ~~-----g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~------ 363 (594)
.. |..... ...+..|.. .|+||||+|.+.+ ...+.|+..|+.-.
T Consensus 371 ~~~~~~~g~~~~~-~G~l~~A~~-----------gil~IDEid~l~~-------------~~q~~Ll~~le~~~i~i~~~ 425 (595)
T 3f9v_A 371 VVREKGTGEYYLE-AGALVLADG-----------GIAVIDEIDKMRD-------------EDRVAIHEAMEQQTVSIAKA 425 (595)
T ss_dssp CSSGGGTSSCSEE-ECHHHHHSS-----------SEECCTTTTCCCS-------------HHHHHHHHHHHSSSEEEESS
T ss_pred eeecccccccccc-CCeeEecCC-----------CcEEeehhhhCCH-------------hHhhhhHHHHhCCEEEEecC
Confidence 11 110000 011222222 3999999998742 23445666655311
Q ss_pred -----ccCcEEEEEeeCCcc-------------cccHHhhCCCCcc-ceeecCCCCHHHHHHHHHHHHhccccC---C--
Q 007661 364 -----SLNNVLLIGMTNRKD-------------MLDEALLRPGRLE-VQVEISLPDENGRLQILQIHTNKMKEN---S-- 419 (594)
Q Consensus 364 -----~~~~v~vI~~tn~~~-------------~ld~al~r~gRf~-~~i~i~~P~~~~r~~IL~~~~~~~~~~---~-- 419 (594)
...++.||+|||++. .+++++++ ||+ ..+..+.|+.+ ...|.+..++..... .
T Consensus 426 g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l 502 (595)
T 3f9v_A 426 GIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNII 502 (595)
T ss_dssp SSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTT
T ss_pred CcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCC
Confidence 124688999999986 78999999 997 45566677777 777777665532210 0
Q ss_pred -----------------CCCCcccHHHHHHH--------------cCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcc
Q 007661 420 -----------------FLAPDVNLQELAAR--------------TKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVD 468 (594)
Q Consensus 420 -----------------~l~~~~~l~~la~~--------------t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~ 468 (594)
+..++...+.|... ..+.+.+.++++++.|...|.-+
T Consensus 503 ~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~------------ 570 (595)
T 3f9v_A 503 DIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMA------------ 570 (595)
T ss_dssp CCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTT------------
T ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHh------------
Confidence 01112223334433 34678888888888887777543
Q ss_pred cchhhcchhHHHHHHHhcc
Q 007661 469 EESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 469 ~~~~~vt~~df~~al~~~~ 487 (594)
....|+.+|+.+|+.-+.
T Consensus 571 -~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 571 -LKAEVTREDAERAINIMR 588 (595)
T ss_dssp -SSCCSSHHHHHHHHHHHH
T ss_pred -CcCCCCHHHHHHHHHHHH
Confidence 234688999998887653
No 97
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.33 E-value=4.3e-11 Score=126.84 Aligned_cols=235 Identities=13% Similarity=0.103 Sum_probs=143.2
Q ss_pred CccccccCCccCcHHHHHHHHHHHH-HccCCChhhhhhcCCCCCceEEE--EcCCCCcHHHHHHHHHHhhCC--------
Q 007661 212 KEFNLQSLGIGGLSAEFADIFRRAF-ASRVFPPHVTSKLGIKHVKGMLL--YGPPGTGKTLMARQIGKMLNG-------- 280 (594)
Q Consensus 212 ~~~~~~~~~igGl~~~~~~i~~~~~-~~~~~~~~~~~~~g~~~~~giLL--~GppGtGKT~lar~ia~~l~~-------- 280 (594)
|...++. +.|.+++++++ .+++ ......+ -..+..++| +||||+|||++++++++.+..
T Consensus 17 ~~~~p~~--l~gR~~el~~l-~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 86 (412)
T 1w5s_A 17 ENYIPPE--LRVRRGEAEAL-ARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLT 86 (412)
T ss_dssp TTCCCSS--CSSSCHHHHHH-HHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CccCCCC--CCChHHHHHHH-HHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCc
Confidence 4444455 99999999988 5554 3221110 024567999 999999999999999988732
Q ss_pred CCcEEEecchhhh------cc---c-------chhH-HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCC
Q 007661 281 MEPKIVNGPEVLS------KF---V-------GETE-KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRD 343 (594)
Q Consensus 281 ~~~~~v~~~~l~~------~~---~-------g~~~-~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~ 343 (594)
..++++++....+ .. . +... .....+.+..... ..+.+|+|||+|.+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-------~~~~llvlDe~~~l~~~~~~--- 156 (412)
T 1w5s_A 87 VKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE-------NHYLLVILDEFQSMLSSPRI--- 156 (412)
T ss_dssp EEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH-------TCEEEEEEESTHHHHSCTTS---
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEeCHHHHhhccCc---
Confidence 3455667543211 10 0 1111 1122222222211 12669999999998643110
Q ss_pred CCchHHHHHHHHHHhhcCcc-cc--CcEEEEEeeCCccc---cc---HHhhCCCCccceeecCCCCHHHHHHHHHHHHhc
Q 007661 344 GTGVHDSIVNQLLTKIDGVE-SL--NNVLLIGMTNRKDM---LD---EALLRPGRLEVQVEISLPDENGRLQILQIHTNK 414 (594)
Q Consensus 344 ~~~~~~~~v~~Ll~~ld~~~-~~--~~v~vI~~tn~~~~---ld---~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~ 414 (594)
....+..++..++... .. .++.+|++++.++. ++ +.+.+ ++...+.+++++.++..++++.++..
T Consensus 157 ----~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~ 230 (412)
T 1w5s_A 157 ----AAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAEL 230 (412)
T ss_dssp ----CHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ----chHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHh
Confidence 1234455555444332 12 57889989887653 45 66666 55556999999999999999877654
Q ss_pred cccCCCCCCcccHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 415 MKENSFLAPDVNLQELAARTK------NYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 415 ~~~~~~l~~~~~l~~la~~t~------g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
..... ..++..+..+++.+. | .++.+..+++.|...+..+. ...++.+++..++.+..
T Consensus 231 ~~~~~-~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~-------------~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 231 GLRDT-VWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMG-------------RDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HBCTT-SCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTT-------------CSSCCHHHHHHHHHHC-
T ss_pred cCCCC-CCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcC-------------CCCCCHHHHHHHHHHHh
Confidence 32111 233445778888888 6 56778888888876665431 23467778877776653
No 98
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.31 E-value=1e-12 Score=118.66 Aligned_cols=111 Identities=21% Similarity=0.179 Sum_probs=75.8
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhH
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETE 300 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~ 300 (594)
+.|.+.+++++ ++.+.... ..+.+|||+||||||||++|+++++... +++.++|.++...+
T Consensus 6 ~iG~s~~~~~l-~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~~~~~~~~----- 66 (143)
T 3co5_A 6 KLGNSAAIQEM-NREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT--PWVSPARVEYLIDM----- 66 (143)
T ss_dssp --CCCHHHHHH-HHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS--CEECCSSTTHHHHC-----
T ss_pred ceeCCHHHHHH-HHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC--CeEEechhhCChHh-----
Confidence 78888888888 44443221 3446899999999999999999999874 77888888776543
Q ss_pred HHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 301 KNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 301 ~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
...+|+.+... +|||||+|.+.+ .....|+..++... ..++.+|++||.+
T Consensus 67 --~~~~~~~a~~~-----------~l~lDei~~l~~-------------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 --PMELLQKAEGG-----------VLYVGDIAQYSR-------------NIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp --HHHHHHHTTTS-----------EEEEEECTTCCH-------------HHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred --hhhHHHhCCCC-----------eEEEeChHHCCH-------------HHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 45566655432 999999999852 12333444444221 3568899999864
No 99
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=5.5e-12 Score=114.11 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=76.0
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccch
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGE 298 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~ 298 (594)
+.|.+..++++. +.+... ...+.+|||+||||||||++|+++++... +.+++ ++|..+...
T Consensus 3 iiG~s~~~~~~~-~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 3 LIGRSEWINQYR-RRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp -CCSSHHHHHHH-HHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred ceeCCHHHHHHH-HHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 678888888883 333221 13446799999999999999999998762 34566 898876654
Q ss_pred hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 299 TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 299 ~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
......|+.+... +|||||+|.+.+ .....|+..|.. ...++.+|++||.+
T Consensus 66 --~~~~~~~~~a~~g-----------~l~ldei~~l~~-------------~~q~~Ll~~l~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQGG-----------TLVLSHPEHLTR-------------EQQYHLVQLQSQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHTTS-----------CEEEECGGGSCH-------------HHHHHHHHHHHS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcCCc-----------EEEEcChHHCCH-------------HHHHHHHHHHhh--cCCCEEEEEECCcC
Confidence 2344556666443 999999999852 233445555532 23467899999975
No 100
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.28 E-value=7.7e-13 Score=136.22 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=77.6
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES--- 570 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~--- 570 (594)
.+.+.|..+.|.......+.+.+.++..+.+.+.. ...|+.++|||||||||||+||+++|++++.+|+.++++++
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 45566777777777766666666666655554433 56788999999999999999999999999999999999987
Q ss_pred ccccccchhhhHHHHHHHhhhcC
Q 007661 571 MIGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 571 ~vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
++|++|+. ++.+|+.|+..
T Consensus 91 ~~g~~~~~----~~~~f~~a~~~ 109 (322)
T 3eie_A 91 WMGESEKL----VKQLFAMAREN 109 (322)
T ss_dssp TGGGHHHH----HHHHHHHHHHT
T ss_pred ccchHHHH----HHHHHHHHHhc
Confidence 48999887 99999999864
No 101
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.28 E-value=6.7e-12 Score=102.54 Aligned_cols=78 Identities=37% Similarity=0.581 Sum_probs=70.2
Q ss_pred ecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhc
Q 007661 395 EISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKV 474 (594)
Q Consensus 395 ~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~v 474 (594)
.-.+||.++|.+||+.++++++ +..++|+..||+.|.||||+||.++|++|++.|+++. ...|
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~----l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-------------~~~I 69 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMN----LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-------------RVHV 69 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSE----ECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-------------CSEE
T ss_pred CCCCcCHHHHHHHHHHHHcCCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-------------CCCC
Confidence 3468999999999999999987 5678999999999999999999999999999999864 3579
Q ss_pred chhHHHHHHHhcccC
Q 007661 475 TMDDFLHALYEIVPA 489 (594)
Q Consensus 475 t~~df~~al~~~~ps 489 (594)
+++||..|+..+.|.
T Consensus 70 ~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 70 TQEDFEMAVAKVMQK 84 (86)
T ss_dssp CHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHccC
Confidence 999999999998774
No 102
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.27 E-value=1.6e-10 Score=119.48 Aligned_cols=161 Identities=12% Similarity=0.108 Sum_probs=109.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCC-----------------------cEEEecchhhhcccchhHHHHHHHHHH
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGME-----------------------PKIVNGPEVLSKFVGETEKNIRDLFAD 309 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~-----------------------~~~v~~~~l~~~~~g~~~~~i~~lf~~ 309 (594)
.+..+||+||||+|||++|+++|+.+.+.. +..++..+ .-.......++++++.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHHH
Confidence 445799999999999999999999985432 11222110 0001234557777776
Q ss_pred HHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCC
Q 007661 310 AENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGR 389 (594)
Q Consensus 310 a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gR 389 (594)
+... |. .+...|++|||+|.+. ....+.|+..++. ...++++|.+||.++.+.+.+++ |
T Consensus 100 ~~~~-~~---~~~~kvviIdead~l~-------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--R 158 (334)
T 1a5t_A 100 LNEH-AR---LGGAKVVWVTDAALLT-------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--R 158 (334)
T ss_dssp TTSC-CT---TSSCEEEEESCGGGBC-------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--T
T ss_pred Hhhc-cc---cCCcEEEEECchhhcC-------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--c
Confidence 6532 21 2235699999999984 2245667777764 34578899999999999999998 5
Q ss_pred ccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 007661 390 LEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (594)
Q Consensus 390 f~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (594)
.. .++|+.|+.++..++|+... ..++..+..++..+.| +.+.+.++++
T Consensus 159 c~-~~~~~~~~~~~~~~~L~~~~--------~~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 159 CR-LHYLAPPPEQYAVTWLSREV--------TMSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp SE-EEECCCCCHHHHHHHHHHHC--------CCCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred ce-eeeCCCCCHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 43 79999999999999988654 1234456778888776 4444444433
No 103
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=2.5e-10 Score=118.27 Aligned_cols=187 Identities=21% Similarity=0.238 Sum_probs=118.9
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCC----cEEEec
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGME----PKIVNG 288 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~----~~~v~~ 288 (594)
.-+|++ +.|.+..++.+ +..+.. | +.+ +++|+||||||||++|+++++.+.+.. +..++.
T Consensus 21 p~~~~~--~~g~~~~~~~L-~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 21 PETLDE--VYGQNEVITTV-RKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp CSSGGG--CCSCHHHHHHH-HHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred CCcHHH--hcCcHHHHHHH-HHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 346777 88888888877 555432 1 122 499999999999999999999975432 334444
Q ss_pred chhhhcccchhHHHHHHHHHHHHhh-ccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCc
Q 007661 289 PEVLSKFVGETEKNIRDLFADAEND-QRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNN 367 (594)
Q Consensus 289 ~~l~~~~~g~~~~~i~~lf~~a~~~-~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~ 367 (594)
++.. + ...+++.+...... .+. ...+.|++|||+|.+.. ...+.|+..++.. ..+
T Consensus 85 ~~~~----~--~~~ir~~i~~~~~~~~~~---~~~~~viiiDe~~~l~~-------------~~~~~L~~~le~~--~~~ 140 (340)
T 1sxj_C 85 SDDR----G--IDVVRNQIKDFASTRQIF---SKGFKLIILDEADAMTN-------------AAQNALRRVIERY--TKN 140 (340)
T ss_dssp TSCC----S--HHHHHTHHHHHHHBCCSS---SCSCEEEEETTGGGSCH-------------HHHHHHHHHHHHT--TTT
T ss_pred cccc----c--HHHHHHHHHHHHhhcccC---CCCceEEEEeCCCCCCH-------------HHHHHHHHHHhcC--CCC
Confidence 4321 1 23444444443321 111 12367999999998742 1234455555432 346
Q ss_pred EEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHH
Q 007661 368 VLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVA 446 (594)
Q Consensus 368 v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~ 446 (594)
..+|.++|.++.+.+++++ |+. .+.+..++.++..+++...++.... -.++..+..++..+.| ..+.+.+++
T Consensus 141 ~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~---~i~~~~~~~i~~~s~G-~~r~~~~~l 212 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKL---KLSPNAEKALIELSNG-DMRRVLNVL 212 (340)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTC---CBCHHHHHHHHHHHTT-CHHHHHHHT
T ss_pred eEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 7788889999999999998 654 7899999999999998877753221 1233456677777655 334433333
No 104
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.24 E-value=1.8e-11 Score=98.37 Aligned_cols=75 Identities=37% Similarity=0.604 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcch
Q 007661 397 SLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTM 476 (594)
Q Consensus 397 ~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~ 476 (594)
|+||.++|.+||+.|+++++ +..++|+..||..|.||||+||.++|++|++.|+++. ...|++
T Consensus 1 plPd~~~R~~Il~~~l~~~~----~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------~~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMN----LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-------------RVHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSE----ECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-------------CSEECH
T ss_pred CcCCHHHHHHHHHHHhcCCC----CCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-------------CCCCCH
Confidence 68999999999999999987 5678999999999999999999999999999999863 356999
Q ss_pred hHHHHHHHhccc
Q 007661 477 DDFLHALYEIVP 488 (594)
Q Consensus 477 ~df~~al~~~~p 488 (594)
+||..|+.++..
T Consensus 64 ~d~~~Al~~v~~ 75 (78)
T 3kw6_A 64 EDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998744
No 105
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.24 E-value=1.9e-12 Score=135.02 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=73.5
Q ss_pred CccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc--
Q 007661 494 TDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM-- 571 (594)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~-- 571 (594)
.+...|..+.|.......+.+.+.++..+.+.+.. ...|+.++|||||||||||+||+++|.+++.+|+.+++++++
T Consensus 45 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 45 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp --CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 34566777777777766666666666555555543 567889999999999999999999999999999999999884
Q ss_pred -cccccchhhhHHHHHHHhhhcC
Q 007661 572 -IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 -vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|++|+. ++.+|..|+..
T Consensus 124 ~~g~~~~~----~~~~f~~a~~~ 142 (355)
T 2qp9_X 124 WMGESEKL----VKQLFAMAREN 142 (355)
T ss_dssp C---CHHH----HHHHHHHHHHT
T ss_pred hcchHHHH----HHHHHHHHHHc
Confidence 8999887 99999998753
No 106
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.22 E-value=7.7e-11 Score=131.54 Aligned_cols=134 Identities=19% Similarity=0.261 Sum_probs=81.3
Q ss_pred cEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCc-------------------cccCcEEEEEeeCCc--cccc
Q 007661 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGV-------------------ESLNNVLLIGMTNRK--DMLD 381 (594)
Q Consensus 323 ~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~-------------------~~~~~v~vI~~tn~~--~~ld 381 (594)
+.+|||||++.+.+ .+.+.|+..|+.- .-..++.||++||+. +.++
T Consensus 202 ~gvL~LDEi~~l~~-------------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~ 268 (604)
T 3k1j_A 202 KGVLFIDEIATLSL-------------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMH 268 (604)
T ss_dssp TSEEEETTGGGSCH-------------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSC
T ss_pred CCEEEEechhhCCH-------------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcC
Confidence 34999999999732 2334455544410 112368899999986 6799
Q ss_pred HHhhCCCCcc---ceeecCCC---CHHHHHHHHHHHHhcccc--CCCCCCcccHHHHHHHc---CCC------CHHHHHH
Q 007661 382 EALLRPGRLE---VQVEISLP---DENGRLQILQIHTNKMKE--NSFLAPDVNLQELAART---KNY------SGAELEG 444 (594)
Q Consensus 382 ~al~r~gRf~---~~i~i~~P---~~~~r~~IL~~~~~~~~~--~~~l~~~~~l~~la~~t---~g~------sg~dl~~ 444 (594)
++|++ ||. ..+.++.. +.+....+++...+.... .....++..+..|.+.. .|- +.+++.+
T Consensus 269 ~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ 346 (604)
T 3k1j_A 269 PALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGG 346 (604)
T ss_dssp HHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHH
T ss_pred HHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHH
Confidence 99998 875 45555432 355666676655443321 11122334455665543 442 6899999
Q ss_pred HHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHH
Q 007661 445 VAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALY 484 (594)
Q Consensus 445 l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~ 484 (594)
+++.|...|..+. ...|+.+|+.+|+.
T Consensus 347 llr~A~~~A~~~~-------------~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 347 IVRAAGDIAVKKG-------------KKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHTT-------------CSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-------------cccccHHHHHHHHH
Confidence 9999987775432 23456666666654
No 107
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.18 E-value=2e-10 Score=116.98 Aligned_cols=129 Identities=9% Similarity=0.078 Sum_probs=95.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC-----CCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEc
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN-----GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFD 329 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~-----~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iD 329 (594)
..+|||||||+|||++|+++++.+. ...+..++.+. + ......++++++.+... |..+ ...|+|||
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~-p~~~---~~kvviId 89 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYS-PELY---TRKYVIVH 89 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSC-CSSS---SSEEEEET
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhc-cccC---CceEEEec
Confidence 4799999999999999999998641 23445555431 0 12345678888887643 3322 34699999
Q ss_pred cchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHH
Q 007661 330 EIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQ 409 (594)
Q Consensus 330 Eid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~ 409 (594)
|+|.+- ....+.|+..|+. ...++++|.+|+.++.|.+.+++ | .+++++|+.++..+.|+
T Consensus 90 ead~lt-------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 90 DCERMT-------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp TGGGBC-------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHH
T ss_pred cHHHhC-------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHH
Confidence 999984 2235667777774 34578888888999999999999 6 78999999999999988
Q ss_pred HHH
Q 007661 410 IHT 412 (594)
Q Consensus 410 ~~~ 412 (594)
..+
T Consensus 150 ~~~ 152 (305)
T 2gno_A 150 EKI 152 (305)
T ss_dssp HHH
T ss_pred HHh
Confidence 765
No 108
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.18 E-value=2e-11 Score=123.04 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=80.1
Q ss_pred ccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---
Q 007661 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM--- 571 (594)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~--- 571 (594)
+.+.+..+.|.......+.+.+..+....+.+...+..++.++|||||||||||++|+++|.+.+.+|+.+.+++++
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 91 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF 91 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence 34556667777777667777777777777888888889999999999999999999999999999999999999885
Q ss_pred cccccchhhhHHHHHHHhhhcC
Q 007661 572 IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|+++.. ++++|..|+..
T Consensus 92 ~~~~~~~----~~~~~~~~~~~ 109 (285)
T 3h4m_A 92 IGEGASL----VKDIFKLAKEK 109 (285)
T ss_dssp TTHHHHH----HHHHHHHHHHT
T ss_pred cchHHHH----HHHHHHHHHHc
Confidence 7877776 99999998754
No 109
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.18 E-value=8.1e-12 Score=134.24 Aligned_cols=96 Identities=20% Similarity=0.300 Sum_probs=69.9
Q ss_pred CCccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc-CCCEEEEeccccc
Q 007661 493 STDDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS-DFPFVKIISAESM 571 (594)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~-~~~fi~v~~~e~~ 571 (594)
..+.+.|..+.|.......+.+.+.++..+.+.+. ....|+.++|||||||||||+||+++|.++ +.+|+.+++++++
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~-~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFT-GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTS-GGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhh-ccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 34556677777776665555555555554444432 234678999999999999999999999999 9999999999984
Q ss_pred ---cccccchhhhHHHHHHHhhhcC
Q 007661 572 ---IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 ---vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|++|.. ++.+|+.|+..
T Consensus 206 ~~~~g~~~~~----~~~~f~~a~~~ 226 (444)
T 2zan_A 206 SKWLGESEKL----VKNLFQLAREN 226 (444)
T ss_dssp ------CCCT----HHHHHHHHHHS
T ss_pred hhhcchHHHH----HHHHHHHHHHc
Confidence 8999987 99999998753
No 110
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.17 E-value=1.7e-10 Score=107.48 Aligned_cols=159 Identities=13% Similarity=0.064 Sum_probs=113.4
Q ss_pred CceeEEEeecCCcccccccEEEeChhhhcccCCCCCCceEEEEeCC-cEEEEEeeC-C---CCCCCceeeCHhhhhccCc
Q 007661 11 GVTTMNVINTPSADLALTNLAYCSPADLLNFRVPNSNLFLASVAGD-SFVLSLASH-P---SVNKGQIALNSVQRRHAKV 85 (594)
Q Consensus 11 ~~~~l~v~~~p~~~~~~tn~a~vsp~~~~~l~~~g~~~~~v~v~g~-~~v~~~~~~-~---~~~~~~i~~~~~~r~~~~~ 85 (594)
..+.++|.=.+. ..++|+++++.|..|++. .+++|++.|+ +.++.+|+. + +.+.+.|+||+..|+|+|+
T Consensus 11 ~~~~~~v~~~~~----~~~~vrL~~~~~~~L~~~--~gd~VeI~g~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv 84 (179)
T 1wlf_A 11 GGAVVTVAFTNA----RDCFLHLPRRLVAQLHLL--QNQAIEVASDHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGL 84 (179)
T ss_dssp CCEEEEEEEECC----SSSCEEECHHHHHHTTCC--TTCCEEEESSSCCEEECEEECSSCC---CCEEEEEHHHHHHTTC
T ss_pred CcEEEEEEEECC----CCcEEECCHHHHHHcCCC--CCcEEEEEeCCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCC
Confidence 345777775543 478999999999999983 1388988764 345555543 2 4678899999999999999
Q ss_pred cCCCeEEEEEeCCCCcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhcc--CcccCCcEEEEEEcC-eeEEEEEEE
Q 007661 86 STGDHVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFIN--QVMTAGQRVVFEYHG-NNYIFTVNG 162 (594)
Q Consensus 86 ~~~~~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~-~~~~~~v~~ 162 (594)
++||.|+|+++.. ...+..|.++-- ..+.-.+. +....+++.+|.+ +++..||.+.+.+.| ..+.|+|++
T Consensus 85 ~~Gd~V~V~~~~~--~~~A~~V~laP~----~~dD~ei~-e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~ 157 (179)
T 1wlf_A 85 SSGDQVFLRPCSH--VVSCQQVEVEPL----SADDWEIL-ELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVT 157 (179)
T ss_dssp CTTCEEEEEECSC--CEECSEEEEEES----SHHHHHHH-HHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEE
T ss_pred CCCCEEEEEECCC--CccceEEEEEcC----CcCCeEEe-hhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEE
Confidence 9999999998431 224555665411 00001121 2235778888889 999999999999877 789999999
Q ss_pred eeecCccccccccceeEcCCcEEEEEe
Q 007661 163 AAVEGQEKSNALERGIITNETYFVFEA 189 (594)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~t~~~~~~ 189 (594)
+.|. ...+.++++|+|.+..
T Consensus 158 ~~P~-------~~~v~It~~TeI~v~p 177 (179)
T 1wlf_A 158 LMPA-------APYGRLETNTKLLIQP 177 (179)
T ss_dssp EESC-------CSSEECCTTCEEEECC
T ss_pred eeCC-------CCeEEECCCcEEEEec
Confidence 9882 2478999999998743
No 111
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.13 E-value=2.7e-11 Score=131.27 Aligned_cols=91 Identities=23% Similarity=0.206 Sum_probs=78.1
Q ss_pred ccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---ccccc
Q 007661 499 RSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIGLH 575 (594)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG~s 575 (594)
|..+.|.......+.+.+.++..+.+.+...+..++.++|||||||||||++|+++|.+++.+|+.++++++ |+|++
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~ 282 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchh
Confidence 344566666666677777777788888888889999999999999999999999999999999999999887 48988
Q ss_pred cchhhhHHHHHHHhhhcC
Q 007661 576 ESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 576 E~~~~~~ir~~F~~A~~~ 593 (594)
+.+ ++.+|+.|+..
T Consensus 283 ~~~----~~~~f~~A~~~ 296 (489)
T 3hu3_A 283 ESN----LRKAFEEAEKN 296 (489)
T ss_dssp HHH----HHHHHHHHHHT
T ss_pred HHH----HHHHHHHHHhc
Confidence 887 99999999764
No 112
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.13 E-value=9.7e-11 Score=96.20 Aligned_cols=74 Identities=28% Similarity=0.464 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHH
Q 007661 400 DENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDF 479 (594)
Q Consensus 400 ~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df 479 (594)
|.++|.+||+.|+++++ +.+++|+..||+.|+||||+||.++|++|++.|+++.. ..|+++||
T Consensus 2 d~~~R~~Il~~~~~~~~----~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMS----VERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSC----BCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCC----CCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-------------ccCCHHHH
Confidence 67899999999999987 66889999999999999999999999999999998742 35999999
Q ss_pred HHHHHhcccCC
Q 007661 480 LHALYEIVPAF 490 (594)
Q Consensus 480 ~~al~~~~ps~ 490 (594)
..|+..+.+..
T Consensus 65 ~~Al~~v~~~~ 75 (88)
T 3vlf_B 65 LKAVDKVISGY 75 (88)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhcCc
Confidence 99999997753
No 113
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.13 E-value=3.6e-11 Score=119.40 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=65.1
Q ss_pred ccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---cc
Q 007661 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---IG 573 (594)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---vG 573 (594)
..+..+.|.......+.++..+ ....+.+...+..++.++||+||||||||++|+++|.+++.+|+.++++++. +|
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~ 87 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 87 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCC
T ss_pred CCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhh
Confidence 4455556655555444444433 2222333444567788999999999999999999999999999999998874 88
Q ss_pred cccchhhhHHHHHHHhhhc
Q 007661 574 LHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 574 ~sE~~~~~~ir~~F~~A~~ 592 (594)
++++. ++.+|+.|+.
T Consensus 88 ~~~~~----~~~~~~~a~~ 102 (257)
T 1lv7_A 88 VGASR----VRDMFEQAKK 102 (257)
T ss_dssp CCHHH----HHHHHHHHHT
T ss_pred hhHHH----HHHHHHHHHH
Confidence 88876 9999999875
No 114
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.12 E-value=2.9e-11 Score=120.04 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=63.4
Q ss_pred cccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---ccc
Q 007661 498 ERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---IGL 574 (594)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---vG~ 574 (594)
.+..+.|.......+.++..+ ....+.+...+..++.++|||||||||||++|+++|.+.+.+|+.+.++++. .|+
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTH
T ss_pred CHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccCh
Confidence 344455555444444444333 2223344455668889999999999999999999999999999999999874 777
Q ss_pred ccchhhhHHHHHHHhhhc
Q 007661 575 HESTKCAQIVKVSECQFS 592 (594)
Q Consensus 575 sE~~~~~~ir~~F~~A~~ 592 (594)
++.. ++.+|+.|++
T Consensus 83 ~~~~----~~~~~~~a~~ 96 (262)
T 2qz4_A 83 GAAR----VRSLFKEARA 96 (262)
T ss_dssp HHHH----HHHHHHHHHH
T ss_pred hHHH----HHHHHHHHHh
Confidence 7765 9999999875
No 115
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.10 E-value=1.2e-09 Score=138.08 Aligned_cols=167 Identities=22% Similarity=0.250 Sum_probs=103.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAI 334 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l 334 (594)
.|..+.||+|||||.+++.+|+.+ +.++++++|++-++. ..+..+|.-+... .++.+|||++.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~l-gr~~~vfnC~~~~d~------~~~g~i~~G~~~~---------GaW~cfDEfNrl 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQL-GRFVLVFCCDEGFDL------QAMSRIFVGLCQC---------GAWGCFDEFNRL 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT-TCCEEEEECSSCCCH------HHHHHHHHHHHHH---------TCEEEEETTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHh-CCeEEEEeCCCCCCH------HHHHHHHhhHhhc---------CcEEEehhhhcC
Confidence 467899999999999999999999 678888999865442 3455666665543 239999999997
Q ss_pred hccCCCCCCCCchHHHHHHHHHHhh-------------c-C--ccccCcEEEEEeeCC----cccccHHhhCCCCcccee
Q 007661 335 CKSRGSTRDGTGVHDSIVNQLLTKI-------------D-G--VESLNNVLLIGMTNR----KDMLDEALLRPGRLEVQV 394 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~v~~Ll~~l-------------d-~--~~~~~~v~vI~~tn~----~~~ld~al~r~gRf~~~i 394 (594)
-. ++. .++.+.+..+ . | +.-..++.+++|.|+ ...|+++|+. ||- .|
T Consensus 669 ~~---------~vL-Svv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr-~v 735 (3245)
T 3vkg_A 669 EE---------RIL-SAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFR-SM 735 (3245)
T ss_dssp CH---------HHH-HHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TEE-EE
T ss_pred CH---------HHH-HHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hcE-EE
Confidence 42 122 2222222211 1 1 223346788888885 2458999998 543 69
Q ss_pred ecCCCCHHHHHHHHHHHHhccccCCCCCC-cccHHHHHH-----H-cCCCCHHHHHHHHHHHHH
Q 007661 395 EISLPDENGRLQILQIHTNKMKENSFLAP-DVNLQELAA-----R-TKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 395 ~i~~P~~~~r~~IL~~~~~~~~~~~~l~~-~~~l~~la~-----~-t~g~sg~dl~~l~~~A~~ 451 (594)
.+..||.+...+|+-.- ........+.. -+.+-.|+. + -..|.-+-++.++..|..
T Consensus 736 ~m~~Pd~~~i~ei~L~s-~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~ 798 (3245)
T 3vkg_A 736 AMIKPDREMIAQVMLYS-QGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGG 798 (3245)
T ss_dssp ECCSCCHHHHHHHHHHT-TTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHH
Confidence 99999999888886321 11110000000 011112221 1 124778889988888774
No 116
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.10 E-value=7.8e-11 Score=126.71 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=72.1
Q ss_pred cccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---cc
Q 007661 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MI 572 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~v 572 (594)
.+.+.++.|.......+.++... ....+.+...+.+++.|+||+||||||||+||+++|.+.+.+|+.+++++. |+
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~ 90 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFV 90 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHh
Confidence 34455566666555555555443 223445667778889999999999999999999999999999999999987 48
Q ss_pred ccccchhhhHHHHHHHhhhcC
Q 007661 573 GLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 573 G~sE~~~~~~ir~~F~~A~~~ 593 (594)
|.++.. +|.+|+.|+..
T Consensus 91 g~~~~~----~r~lf~~A~~~ 107 (476)
T 2ce7_A 91 GVGAAR----VRDLFAQAKAH 107 (476)
T ss_dssp THHHHH----HHHHHHHHHHT
T ss_pred cccHHH----HHHHHHHHHhc
Confidence 888776 99999999753
No 117
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.07 E-value=1.9e-10 Score=93.41 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHH
Q 007661 400 DENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDF 479 (594)
Q Consensus 400 ~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df 479 (594)
|.++|.+||+.|+++++ +.+++|+..||+.|+||||+||.++|++|++.|+++. ...|+++||
T Consensus 2 d~~~R~~Il~~~l~~~~----~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------~~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMN----LSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------RYIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSC----BCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCC----CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------cCCcCHHHH
Confidence 78999999999999887 5678999999999999999999999999999998753 256999999
Q ss_pred HHHHHhcccCCC
Q 007661 480 LHALYEIVPAFG 491 (594)
Q Consensus 480 ~~al~~~~ps~~ 491 (594)
..|+..+.|+..
T Consensus 65 ~~Al~~~~ps~~ 76 (83)
T 3aji_B 65 EKAYKTVIKKDE 76 (83)
T ss_dssp HHHHHHHCC---
T ss_pred HHHHHHHccCch
Confidence 999999999864
No 118
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.07 E-value=5.4e-11 Score=120.71 Aligned_cols=58 Identities=12% Similarity=-0.033 Sum_probs=51.3
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---ccccccchhhhHHHHHHHhh
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG~sE~~~~~~ir~~F~~A 590 (594)
.+.++|.++|||||||||||+||+++|.+++.+|+.++++++ |+|+++.. |+++|+.|
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~----i~~~f~~a 91 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKL----IRQRYREA 91 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHH----HHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHH----HHHHHHHH
Confidence 456788999999999999999999999999999999999988 48988887 99999998
No 119
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.06 E-value=6.4e-11 Score=120.11 Aligned_cols=94 Identities=20% Similarity=0.204 Sum_probs=67.0
Q ss_pred ccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---
Q 007661 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM--- 571 (594)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~--- 571 (594)
+...|..+.|.......+.+.+.++..+.+.+... ..|+.++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 34455556665554444444444333332222222 25678999999999999999999999999999999999985
Q ss_pred cccccchhhhHHHHHHHhhhcC
Q 007661 572 IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 572 vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
+|+++.. ++.+|..|+..
T Consensus 95 ~~~~~~~----~~~~~~~~~~~ 112 (297)
T 3b9p_A 95 VGDGEKL----VRALFAVARHM 112 (297)
T ss_dssp CSCHHHH----HHHHHHHHHHT
T ss_pred cchHHHH----HHHHHHHHHHc
Confidence 7877765 99999988753
No 120
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.05 E-value=4e-11 Score=119.74 Aligned_cols=92 Identities=21% Similarity=0.267 Sum_probs=72.5
Q ss_pred cccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---cc
Q 007661 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MI 572 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~v 572 (594)
...+..+.|.......+.+++.+ ....+.+...+..++.++|||||||||||++|+++|.+.+.+|+.++++++ ++
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~ 85 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFV 85 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCS
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhc
Confidence 34455566666665556655544 345566777788888999999999999999999999999999999998877 48
Q ss_pred ccccchhhhHHHHHHHhhhc
Q 007661 573 GLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 573 G~sE~~~~~~ir~~F~~A~~ 592 (594)
|+++.. ++.+|+.|+.
T Consensus 86 ~~~~~~----~~~~~~~a~~ 101 (268)
T 2r62_A 86 GLGASR----VRDLFETAKK 101 (268)
T ss_dssp SSCSSS----SSTTHHHHHH
T ss_pred chHHHH----HHHHHHHHHh
Confidence 888876 8889998875
No 121
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.04 E-value=7e-11 Score=123.33 Aligned_cols=93 Identities=20% Similarity=0.210 Sum_probs=68.0
Q ss_pred cccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---c
Q 007661 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---I 572 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---v 572 (594)
...|..+.|.......+.+.+.++....+.+... ..++.++||+||||||||++|+++|.+++.+|+.+++++++ +
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~ 158 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWV 158 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcccc
Confidence 3455556665555444444444443333322222 36788999999999999999999999999999999999985 7
Q ss_pred ccccchhhhHHHHHHHhhhcC
Q 007661 573 GLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 573 G~sE~~~~~~ir~~F~~A~~~ 593 (594)
|+++.. ++.+|..|+..
T Consensus 159 g~~~~~----~~~~~~~a~~~ 175 (357)
T 3d8b_A 159 GEGEKM----VRALFAVARCQ 175 (357)
T ss_dssp THHHHH----HHHHHHHHHHT
T ss_pred chHHHH----HHHHHHHHHhc
Confidence 888776 99999998753
No 122
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.01 E-value=3.5e-09 Score=129.21 Aligned_cols=119 Identities=20% Similarity=0.321 Sum_probs=69.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhccc----c------------hhHHHHHHHHHHHH
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKFV----G------------ETEKNIRDLFADAE 311 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~~----g------------~~~~~i~~lf~~a~ 311 (594)
|+++...++|+||||||||++|.+++.+. .+....+++..+...... | ..+ ....+.+...
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e-~~~~i~~~l~ 1155 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE-QALEICDALA 1155 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHH-HHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchH-HHHHHHHHHH
Confidence 58899999999999999999999998664 355667777665433211 1 111 2222323222
Q ss_pred hhccccCCCCCcEEEEEccchhhhccCCC----CCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCC
Q 007661 312 NDQRTRGDQSDLHVIIFDEIDAICKSRGS----TRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR 376 (594)
Q Consensus 312 ~~~~~~~~~~~~~Il~iDEid~l~~~~~~----~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~ 376 (594)
+.. .|++|+||++..+.+.... .....+...+.+.+++..+.......++.+|.+...
T Consensus 1156 ~~~-------~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1156 RSG-------AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 1217 (2050)
T ss_dssp HHT-------CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred HhC-------CCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHhCCeEEEEecCC
Confidence 221 2569999999999654321 111113344455555444444334456666655433
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.99 E-value=6.9e-10 Score=103.84 Aligned_cols=108 Identities=17% Similarity=0.233 Sum_probs=64.2
Q ss_pred hcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEecchhhhcccchhHHH-HHHHHHHHHhhccccCCCCCc
Q 007661 248 KLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGPEVLSKFVGETEKN-IRDLFADAENDQRTRGDQSDL 323 (594)
Q Consensus 248 ~~g~~~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~~~l~~~~~g~~~~~-i~~lf~~a~~~~~~~~~~~~~ 323 (594)
.+.+.++.+++|+||||||||++++++++.+. +..+.+++..++...+....... ...+++... .|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 101 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL----------NS 101 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH----------TC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc----------CC
Confidence 34445678999999999999999999998873 44566777777665432211110 011222221 24
Q ss_pred EEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 324 HVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 324 ~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
.+|+|||++... ........+..++.... . .+..+|.+||.+
T Consensus 102 ~llilDE~~~~~--------~~~~~~~~l~~ll~~~~---~-~~~~ii~tsn~~ 143 (180)
T 3ec2_A 102 PVLVLDDLGSER--------LSDWQRELISYIITYRY---N-NLKSTIITTNYS 143 (180)
T ss_dssp SEEEEETCSSSC--------CCHHHHHHHHHHHHHHH---H-TTCEEEEECCCC
T ss_pred CEEEEeCCCCCc--------CCHHHHHHHHHHHHHHH---H-cCCCEEEEcCCC
Confidence 599999998542 11234444445544321 1 245677777765
No 124
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.96 E-value=7.5e-10 Score=119.37 Aligned_cols=71 Identities=28% Similarity=0.379 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcC--CCEEEEeccccc---cccccchhhhHHHHHHH
Q 007661 514 HIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISAESM---IGLHESTKCAQIVKVSE 588 (594)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~--~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~ 588 (594)
+++..+....+.+ ..+..|+.++|||||||||||++|+++|.+++ ++|+.+++++++ +|++|. ++++|+
T Consensus 44 ~~~~~l~~~~~~~-~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~ 117 (456)
T 2c9o_A 44 NAREACGVIVELI-KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-----LMENFR 117 (456)
T ss_dssp HHHHHHHHHHHHH-HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHHH-HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-----HHHHHH
Confidence 3344433444444 34667889999999999999999999999999 999999999996 887774 999999
Q ss_pred hh
Q 007661 589 CQ 590 (594)
Q Consensus 589 ~A 590 (594)
+|
T Consensus 118 ~a 119 (456)
T 2c9o_A 118 RA 119 (456)
T ss_dssp HT
T ss_pred HH
Confidence 98
No 125
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.96 E-value=2.4e-10 Score=120.69 Aligned_cols=58 Identities=29% Similarity=0.364 Sum_probs=49.7
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---cccccchhhhHHHHHHHhhhcC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM---IGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
.++.++|||||||||||++|+++|.+++.+|+.++++++. +|+++.. ++.+|+.|+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~----~~~~~~~a~~~ 206 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKL----VRALFAVAREL 206 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHH----HHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHH----HHHHHHHHHhc
Confidence 5678999999999999999999999999999999999984 8888876 99999998763
No 126
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.92 E-value=1.1e-09 Score=108.35 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=68.6
Q ss_pred ccccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc---
Q 007661 495 DDLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM--- 571 (594)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~--- 571 (594)
+.+.+..+.|.......+.++.... .....+...+...+.|++|+||||||||+||+++|.+.+.+++.+.+.++.
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 89 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 89 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence 3455555666555544444444332 223455666778888899999999999999999999999999999998763
Q ss_pred cccccchhhhHHHHHHHhhhc
Q 007661 572 IGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 572 vG~sE~~~~~~ir~~F~~A~~ 592 (594)
+|++++. ++.+|+.|+.
T Consensus 90 ~~~~~~~----i~~~~~~~~~ 106 (254)
T 1ixz_A 90 VGVGAAR----VRDLFETAKR 106 (254)
T ss_dssp TTHHHHH----HHHHHHHHTT
T ss_pred hhHHHHH----HHHHHHHHHh
Confidence 6766655 9999999864
No 127
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.91 E-value=4.7e-10 Score=121.31 Aligned_cols=91 Identities=19% Similarity=0.250 Sum_probs=64.8
Q ss_pred ccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---ccc
Q 007661 497 LERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MIG 573 (594)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~vG 573 (594)
+.+.++.|.......+.++.... .....+...+..++.|+||+||||||||+||+++|.+++.+|+.++++++ ++|
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l-~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g 106 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVG 106 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHH-HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHh-hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhh
Confidence 33444455444433333333221 11222334456778899999999999999999999999999999999886 478
Q ss_pred cccchhhhHHHHHHHhhhc
Q 007661 574 LHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 574 ~sE~~~~~~ir~~F~~A~~ 592 (594)
.++++ ++.+|+.|++
T Consensus 107 ~~~~~----v~~lfq~a~~ 121 (499)
T 2dhr_A 107 VGAAR----VRDLFETAKR 121 (499)
T ss_dssp HHHHH----HHHHTTTSSS
T ss_pred hHHHH----HHHHHHHHHh
Confidence 77765 9999999874
No 128
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.91 E-value=1.5e-09 Score=115.15 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=50.1
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc----cccc-ccchhhhHHHHHHHhhhc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGL-HESTKCAQIVKVSECQFS 592 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~----~vG~-sE~~~~~~ir~~F~~A~~ 592 (594)
.++.++||+||||||||++|+++|.+++.+|+.++++.+ |+|+ +|.. ++++|+.|++
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~----lr~lf~~a~~ 109 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI----IRDLTDSAMK 109 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHH----HHHHHHHHHH
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHH----HHHHHHHHHh
Confidence 367899999999999999999999999999999999876 5885 6766 9999999863
No 129
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.85 E-value=1.5e-09 Score=109.73 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=75.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEec--chhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEE
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNG--PEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVII 327 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~--~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~ 327 (594)
|+.+...++|+||||||||++|.+++.. .+..+.+++. .+.++.+..+.+..+..+++...+. . +|+
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~---------~-LLV 187 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH---------R-VIV 187 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC---------S-EEE
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC---------C-EEE
Confidence 4556667899999999999999999987 3334334444 4444444455566666666666543 2 999
Q ss_pred EccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHh
Q 007661 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEAL 384 (594)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al 384 (594)
||+++.+........ ..+...+.+.+++..|+++....++.+|+++|. ...|+++
T Consensus 188 IDsI~aL~~~~~~~s-~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~deal 242 (331)
T 2vhj_A 188 IDSLKNVIGAAGGNT-TSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDKI 242 (331)
T ss_dssp EECCTTTC------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSSH
T ss_pred Eeccccccccccccc-ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchhH
Confidence 999999965433211 111123456667777766655567888888884 4455543
No 130
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.83 E-value=1.1e-08 Score=107.80 Aligned_cols=172 Identities=22% Similarity=0.279 Sum_probs=97.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcc-------------cchhHHHHHHHHHHHHhhccccC
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKF-------------VGETEKNIRDLFADAENDQRTRG 318 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~-------------~g~~~~~i~~lf~~a~~~~~~~~ 318 (594)
..++|++|++||||+++|+++..... ..+++.++|..+.... .|... .....|+.|..+
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~g----- 233 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADGG----- 233 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTTS-----
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCCc-----
Confidence 45789999999999999999998753 3568889998764321 11110 012344444443
Q ss_pred CCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC-----ccc----cCcEEEEEeeCCcccccHHhhCCCC
Q 007661 319 DQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----VES----LNNVLLIGMTNRKDMLDEALLRPGR 389 (594)
Q Consensus 319 ~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~-----~~~----~~~v~vI~~tn~~~~ld~al~r~gR 389 (594)
+||||||+.+.+ .+...|+..++. +.. ..++.+|++||+. +...+ +.|+
T Consensus 234 ------tlfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~~~~-~~g~ 291 (387)
T 1ny5_A 234 ------TLFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRN--IKELV-KEGK 291 (387)
T ss_dssp ------EEEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSC--HHHHH-HTTS
T ss_pred ------EEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCC--HHHHH-HcCC
Confidence 999999999842 234445554442 111 2368899999974 22222 2233
Q ss_pred cc-------ceeecCCCCHH----HHHHHHHHHHhcc----ccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 390 LE-------VQVEISLPDEN----GRLQILQIHTNKM----KENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 390 f~-------~~i~i~~P~~~----~r~~IL~~~~~~~----~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
|. ..+.+..|... +...+.+.++++. .....-.+...+..|.....--+.++|++++++|+..+
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 32 12344555544 4444445444433 21111112233455555443335579999999988654
No 131
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=98.81 E-value=1.6e-09 Score=87.62 Aligned_cols=69 Identities=26% Similarity=0.317 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHH
Q 007661 402 NGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLH 481 (594)
Q Consensus 402 ~~r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~ 481 (594)
++|.+||+.|+++++ +.+++|+..||..|+||||+||.++|++|++.|+++. ...|+++||..
T Consensus 1 ~~R~~Il~~~l~~~~----~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-------------~~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMS----LAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-------------RYVILQSDLEE 63 (82)
T ss_dssp -------------CE----ECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-------------CSEECHHHHHH
T ss_pred CHHHHHHHHHHcCCC----CCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-------------cCCcCHHHHHH
Confidence 479999999999887 5678999999999999999999999999999999863 24699999999
Q ss_pred HHHhcc
Q 007661 482 ALYEIV 487 (594)
Q Consensus 482 al~~~~ 487 (594)
|+.++.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 999984
No 132
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.77 E-value=6.4e-09 Score=104.40 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=66.2
Q ss_pred cccccccCcceeccchhhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc---cc
Q 007661 496 DLERSRLNGMVDCGDRHKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES---MI 572 (594)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~---~v 572 (594)
.+.+..+.|.......+.++.... .....+...+...+.|++|+||||||||+||+++|.+.+.+++.+.+.++ +.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~ 114 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 114 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTT
T ss_pred CCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHh
Confidence 344555555554444444443322 22344556677778889999999999999999999999999999998876 36
Q ss_pred ccccchhhhHHHHHHHhhhc
Q 007661 573 GLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 573 G~sE~~~~~~ir~~F~~A~~ 592 (594)
|+.++. ++.+|+.|+.
T Consensus 115 ~~~~~~----i~~~~~~~~~ 130 (278)
T 1iy2_A 115 GVGAAR----VRDLFETAKR 130 (278)
T ss_dssp THHHHH----HHHHHHHHHT
T ss_pred hHHHHH----HHHHHHHHHh
Confidence 666654 9999999864
No 133
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.75 E-value=1.5e-08 Score=91.81 Aligned_cols=60 Identities=13% Similarity=0.245 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+...++|+||+|+|||+++++++..+. +...+++++.++... . | .. .+.+|+|||
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------~-~----~~--------~~~lLilDE 91 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------D-A----AF--------EAEYLAVDQ 91 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------G-G----GG--------GCSEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------H-H----Hh--------CCCEEEEeC
Confidence 456899999999999999999999873 333677777766543 0 0 11 245999999
Q ss_pred chhhh
Q 007661 331 IDAIC 335 (594)
Q Consensus 331 id~l~ 335 (594)
++.+.
T Consensus 92 ~~~~~ 96 (149)
T 2kjq_A 92 VEKLG 96 (149)
T ss_dssp TTCCC
T ss_pred ccccC
Confidence 99864
No 134
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.74 E-value=2.2e-08 Score=95.28 Aligned_cols=72 Identities=24% Similarity=0.432 Sum_probs=47.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhhcccchh-HHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLSKFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~~~~g~~-~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+++++|+||||||||++|+++++.+. +..+.+++++++........ ...+..+++.... +.+|+|||
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~lilDe 123 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK----------VPVLMLDD 123 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH----------SSEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC----------CCEEEEcC
Confidence 47999999999999999999999873 34566788877655332111 0011223333322 23999999
Q ss_pred chhhh
Q 007661 331 IDAIC 335 (594)
Q Consensus 331 id~l~ 335 (594)
++...
T Consensus 124 i~~~~ 128 (202)
T 2w58_A 124 LGAEA 128 (202)
T ss_dssp ECCC-
T ss_pred CCCCc
Confidence 97653
No 135
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.66 E-value=5.1e-08 Score=92.66 Aligned_cols=126 Identities=17% Similarity=0.219 Sum_probs=78.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhh-------CC-CCcEEEecchhhhccc----------ch-----hHHHHHHHHHHHHh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKML-------NG-MEPKIVNGPEVLSKFV----------GE-----TEKNIRDLFADAEN 312 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l-------~~-~~~~~v~~~~l~~~~~----------g~-----~~~~i~~lf~~a~~ 312 (594)
-.|++|+||||||++|...+... .+ .++++.+.+++...+. .. ....+.+.+..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 57899999999999998865442 23 5565667665543221 10 11112221111111
Q ss_pred hccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccc
Q 007661 313 DQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEV 392 (594)
Q Consensus 313 ~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~ 392 (594)
..++|+|||++.+.+.+.... +. . .++..+.. .....+.+|.+|++++.|+.+++. |++.
T Consensus 87 ---------~~~vliIDEAq~l~~~~~~~~---e~-~----rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~ 146 (199)
T 2r2a_A 87 ---------IGSIVIVDEAQDVWPARSAGS---KI-P----ENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRK 146 (199)
T ss_dssp ---------TTCEEEETTGGGTSBCCCTTC---CC-C----HHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEE
T ss_pred ---------CceEEEEEChhhhccCccccc---hh-H----HHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--Hhhe
Confidence 134999999999987653211 11 1 24444432 233467788889999999999988 9999
Q ss_pred eeecCCCCH
Q 007661 393 QVEISLPDE 401 (594)
Q Consensus 393 ~i~i~~P~~ 401 (594)
++++..|..
T Consensus 147 ~~~l~~~~~ 155 (199)
T 2r2a_A 147 HYHIASNKM 155 (199)
T ss_dssp EEEEEECSS
T ss_pred EEEEcCccc
Confidence 999988654
No 136
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.63 E-value=2e-07 Score=97.34 Aligned_cols=171 Identities=19% Similarity=0.284 Sum_probs=98.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCC-CCcEEEecchhhhccc-----c--------hhHHHHHHHHHHHHhhccccCCC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNG-MEPKIVNGPEVLSKFV-----G--------ETEKNIRDLFADAENDQRTRGDQ 320 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~-~~~~~v~~~~l~~~~~-----g--------~~~~~i~~lf~~a~~~~~~~~~~ 320 (594)
..+|++|++||||+++|+++...... ..++.+||..+..... | ... .-...|+.|..+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a~~g------- 224 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELADQG------- 224 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHTTTS-------
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhcCCC-------
Confidence 46999999999999999999987632 2378899987643211 1 000 011234444443
Q ss_pred CCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcC-----ccc----cCcEEEEEeeCCcccccHHhhCCCCcc
Q 007661 321 SDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDG-----VES----LNNVLLIGMTNRKDMLDEALLRPGRLE 391 (594)
Q Consensus 321 ~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~-----~~~----~~~v~vI~~tn~~~~ld~al~r~gRf~ 391 (594)
+||||||+.+.+ .+...|+..++. +.. .-++.+|++||.. +...+ ..|+|.
T Consensus 225 ----tlfldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~--l~~~v-~~g~fr 284 (368)
T 3dzd_A 225 ----TLFLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKN--LEEEI-KKGNFR 284 (368)
T ss_dssp ----EEEEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSC--HHHHH-HTTSSC
T ss_pred ----eEEecChhhCCH-------------HHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCC--HHHHH-HcCCcc
Confidence 999999999842 344455555542 111 1267899999964 22222 223332
Q ss_pred c---------eeecCCCCH--HHHHHHHHHHHhcccc----CCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 007661 392 V---------QVEISLPDE--NGRLQILQIHTNKMKE----NSFLAPDVNLQELAARTKNYSGAELEGVAKSAVSFA 453 (594)
Q Consensus 392 ~---------~i~i~~P~~--~~r~~IL~~~~~~~~~----~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a 453 (594)
. .|++|+..+ ++...+++.++++... ...-.++..+..|.....--+.++|+++++.|...+
T Consensus 285 ~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 285 EDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence 2 455555544 4555666655544321 111122334555655554445699999999887543
No 137
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.63 E-value=9.3e-08 Score=97.40 Aligned_cols=73 Identities=23% Similarity=0.448 Sum_probs=46.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEecchhhhcccchh-HHHHHHHHHHHHhhccccCCCCCcEEEEE
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGPEVLSKFVGET-EKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~~~l~~~~~g~~-~~~i~~lf~~a~~~~~~~~~~~~~~Il~i 328 (594)
+..+++|+||||||||++|+++++.+. +..+.++++++++....... .......+..... ..+|+|
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----------~~lLii 220 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN----------VPVLIL 220 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT----------SSEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC----------CCEEEE
Confidence 357999999999999999999998764 35667788887765432211 1111222222221 349999
Q ss_pred ccchhhh
Q 007661 329 DEIDAIC 335 (594)
Q Consensus 329 DEid~l~ 335 (594)
||++...
T Consensus 221 Ddig~~~ 227 (308)
T 2qgz_A 221 DDIGAEQ 227 (308)
T ss_dssp ETCCC--
T ss_pred cCCCCCC
Confidence 9997653
No 138
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.63 E-value=8.7e-07 Score=91.25 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=109.0
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh-----h--
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL-----S-- 293 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~-----~-- 293 (594)
+.|.+++++.+ .+ +.. ..++++||+|+|||++++.+++.+.. ..+++++.... +
T Consensus 15 ~~gR~~el~~L-~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 15 FFDREKEIEKL-KG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNL-PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SCCCHHHHHHH-HH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTC-CEEEEEGGGGTTCSCCCHH
T ss_pred hcChHHHHHHH-HH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCC-CEEEEEchhhccccCCCHH
Confidence 88999998887 43 321 37999999999999999999998743 35667765431 0
Q ss_pred cccchh---------------------------------------HHHHHHHHHHHHhhccccCCCCCcEEEEEccchhh
Q 007661 294 KFVGET---------------------------------------EKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAI 334 (594)
Q Consensus 294 ~~~g~~---------------------------------------~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l 334 (594)
...... ...+..+++...... . .|.+|+|||++.+
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~--~~~vlvlDe~~~~ 149 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQAS----K--DNVIIVLDEAQEL 149 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTC----S--SCEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcC----C--CCeEEEEECHHHh
Confidence 000000 012233333333211 0 2679999999998
Q ss_pred hccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHh--h-----CCCCccceeecCCCCHHHHHHH
Q 007661 335 CKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEAL--L-----RPGRLEVQVEISLPDENGRLQI 407 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al--~-----r~gRf~~~i~i~~P~~~~r~~I 407 (594)
..... .+ ....+..+.... .++.+|.+++....+...+ . -.+|+...+++++.+.++..++
T Consensus 150 ~~~~~-----~~-~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 150 VKLRG-----VN-LLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp GGCTT-----CC-CHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred hccCc-----hh-HHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHH
Confidence 64210 11 122334443321 3667777776543222210 0 1336667899999999999999
Q ss_pred HHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHH
Q 007661 408 LQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKS 448 (594)
Q Consensus 408 L~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~ 448 (594)
++..+.... ...+ +...+...+.|+.. -+..++..
T Consensus 218 l~~~~~~~~----~~~~-~~~~i~~~t~G~P~-~l~~~~~~ 252 (357)
T 2fna_A 218 LRRGFQEAD----IDFK-DYEVVYEKIGGIPG-WLTYFGFI 252 (357)
T ss_dssp HHHHHHHHT----CCCC-CHHHHHHHHCSCHH-HHHHHHHH
T ss_pred HHHHHHHcC----CCCC-cHHHHHHHhCCCHH-HHHHHHHH
Confidence 987765322 1112 23888899988654 45544443
No 139
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.62 E-value=1.4e-06 Score=89.41 Aligned_cols=191 Identities=14% Similarity=0.149 Sum_probs=109.0
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh--------
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL-------- 292 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~-------- 292 (594)
+.|.+++++++ .+++.. | ..++++||+|+|||++++.+++... .+++++....
T Consensus 14 ~~gR~~el~~L-~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 14 IFDREEESRKL-EESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP---GILIDCRELYAERGHITR 74 (350)
T ss_dssp SCSCHHHHHHH-HHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS---EEEEEHHHHHHTTTCBCH
T ss_pred cCChHHHHHHH-HHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC---cEEEEeecccccccCCCH
Confidence 88999999988 555532 1 4799999999999999999998863 5566664331
Q ss_pred ----h---cccch---------------------hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCC
Q 007661 293 ----S---KFVGE---------------------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDG 344 (594)
Q Consensus 293 ----~---~~~g~---------------------~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~ 344 (594)
. ...+. ....+.++++........ ..|.+|+|||++.+.....
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~vlvlDe~~~~~~~~~----- 145 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEE----LGEFIVAFDEAQYLRFYGS----- 145 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHH----HSCEEEEEETGGGGGGBTT-----
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhc----cCCEEEEEeCHHHHhccCc-----
Confidence 0 00000 001122233222211000 0156999999999863100
Q ss_pred CchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHH-----hh--CCCCccceeecCCCCHHHHHHHHHHHHhcccc
Q 007661 345 TGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEA-----LL--RPGRLEVQVEISLPDENGRLQILQIHTNKMKE 417 (594)
Q Consensus 345 ~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~a-----l~--r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~ 417 (594)
.....++..|...++.. .++.+|.++.....++.. .. -.+|+...+++++.+.++..++++..+.....
T Consensus 146 -~~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 146 -RGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp -TTTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred -cchhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 00122333333333321 366677666543222221 00 12466668999999999999999876653221
Q ss_pred CCCCCCcccHHHHHHHcCCCCHHHHHHHHH
Q 007661 418 NSFLAPDVNLQELAARTKNYSGAELEGVAK 447 (594)
Q Consensus 418 ~~~l~~~~~l~~la~~t~g~sg~dl~~l~~ 447 (594)
..++..+..+...+.|+.. -+..++.
T Consensus 222 ---~~~~~~~~~i~~~tgG~P~-~l~~~~~ 247 (350)
T 2qen_A 222 ---DVPENEIEEAVELLDGIPG-WLVVFGV 247 (350)
T ss_dssp ---CCCHHHHHHHHHHHTTCHH-HHHHHHH
T ss_pred ---CCCHHHHHHHHHHhCCCHH-HHHHHHH
Confidence 1234467788889988654 4544443
No 140
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.61 E-value=4.2e-08 Score=102.38 Aligned_cols=55 Identities=33% Similarity=0.329 Sum_probs=47.8
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc----ccccccchhhhHHHHHHHhh
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~----~vG~sE~~~~~~ir~~F~~A 590 (594)
++.++||+||||||||++|+++|..++.+|+.++++++ |+|++... .++++|+.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~---~~~~~~~~~ 108 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN---IIQKLLQKC 108 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTH---HHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHH---HHHHHHHHh
Confidence 67889999999999999999999999999999999876 47876333 388888876
No 141
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.55 E-value=8.3e-08 Score=97.47 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=58.5
Q ss_pred cCcceeccchhhHHHHHHHHHHHHHHhcC---CCcceEEEeecCCCCchHHHHHHHHhhc-------CCCEEEEeccccc
Q 007661 502 LNGMVDCGDRHKHIYQRAMLLVEQVKVSK---GSPLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISAESM 571 (594)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p~~gvLL~GPpG~GKT~lAkalA~~~-------~~~fi~v~~~e~~ 571 (594)
+.|.......+.+++.+... .+.....+ ..+..++||+||||||||++|+++|.+. ..+|+.++.+++.
T Consensus 33 i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred ccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 34455544444444443321 22222222 3556679999999999999999999877 4499999988874
Q ss_pred ---cccccchhhhHHHHHHHhhh
Q 007661 572 ---IGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 572 ---vG~sE~~~~~~ir~~F~~A~ 591 (594)
+|+++.. ++++|+.|.
T Consensus 112 ~~~~g~~~~~----~~~~~~~~~ 130 (309)
T 3syl_A 112 GQYIGHTAPK----TKEVLKRAM 130 (309)
T ss_dssp CSSTTCHHHH----HHHHHHHHT
T ss_pred hhcccccHHH----HHHHHHhcC
Confidence 7877765 899998874
No 142
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.52 E-value=2.9e-07 Score=97.16 Aligned_cols=189 Identities=15% Similarity=0.106 Sum_probs=103.5
Q ss_pred eEEEEcCCCCcHHHHHHHH-HHhhCCCCcEEEec--c---hhhhcccch--hHHHHHHHHHHHHhhccccCCCCCcEEEE
Q 007661 256 GMLLYGPPGTGKTLMARQI-GKMLNGMEPKIVNG--P---EVLSKFVGE--TEKNIRDLFADAENDQRTRGDQSDLHVII 327 (594)
Q Consensus 256 giLL~GppGtGKT~lar~i-a~~l~~~~~~~v~~--~---~l~~~~~g~--~~~~i~~lf~~a~~~~~~~~~~~~~~Il~ 327 (594)
+|||.|+||| ||++|+++ ++.+.. ..++.+ + .+.....+. .... ...+..|..+ ++|
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~~gLt~s~r~~tG~~~~-~G~l~LAdgG-----------vl~ 305 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTELTDLTAVLKEDRGWALR-AGAAVLADGG-----------ILA 305 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCHHHHSEEEEESSSEEEE-ECHHHHTTTS-----------EEE
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCccCceEEEEcCCCcccC-CCeeEEcCCC-----------eee
Confidence 7999999999 99999999 665532 222221 1 111110000 0000 0011222222 999
Q ss_pred EccchhhhccCCCCCCCCchHHHHHHHHHHhhc-------CccccCcEEEEEeeCCcc-----------cccHHhhCCCC
Q 007661 328 FDEIDAICKSRGSTRDGTGVHDSIVNQLLTKID-------GVESLNNVLLIGMTNRKD-----------MLDEALLRPGR 389 (594)
Q Consensus 328 iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld-------~~~~~~~v~vI~~tn~~~-----------~ld~al~r~gR 389 (594)
+|||+.+- ......|++.|+ |..-..++.||||+|+.+ .|+++++. |
T Consensus 306 lDEIn~~~-------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--R 370 (506)
T 3f8t_A 306 VDHLEGAP-------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--H 370 (506)
T ss_dssp EECCTTCC-------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--T
T ss_pred hHhhhhCC-------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--h
Confidence 99999874 234455555554 222234789999999865 68889998 9
Q ss_pred cccee-ecCCCCHHHH---------HHHHHHHHhccc---cCCCCCCcccHHHHHH-----------------HcCCCCH
Q 007661 390 LEVQV-EISLPDENGR---------LQILQIHTNKMK---ENSFLAPDVNLQELAA-----------------RTKNYSG 439 (594)
Q Consensus 390 f~~~i-~i~~P~~~~r---------~~IL~~~~~~~~---~~~~l~~~~~l~~la~-----------------~t~g~sg 439 (594)
|+..+ .++.|+.+.- .+.|+.+..... ....+. +...+++.. ...|.+.
T Consensus 371 FDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls-~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSp 449 (506)
T 3f8t_A 371 FDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELT-EEARKRLEHWYETRREEVEERLGMGLPTLPVTR 449 (506)
T ss_dssp CSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEEC-HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCH
T ss_pred eeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeC-HHHHHHHHHHHHHHhcCcccccccccccccccH
Confidence 97543 3455554331 122222211111 011111 111111110 2447889
Q ss_pred HHHHHHHHHHHHHHHHhccCcccCCCCcccchhhcchhHHHHHHHhccc
Q 007661 440 AELEGVAKSAVSFALNRQLSMDDLTKPVDEESIKVTMDDFLHALYEIVP 488 (594)
Q Consensus 440 ~dl~~l~~~A~~~a~~r~~~~~~~~~~~~~~~~~vt~~df~~al~~~~p 488 (594)
+.+++|++.|...|.-+. ...|+.+|+..|+.-+..
T Consensus 450 R~leaLiRlA~A~A~L~g-------------R~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 450 RQLESVERLAKAHARMRL-------------SDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHHHHHHHTT-------------CSEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC-------------cCCCCHHHHHHHHHHHHH
Confidence 999999999988886542 456899999999886643
No 143
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.47 E-value=3.5e-07 Score=111.81 Aligned_cols=124 Identities=23% Similarity=0.348 Sum_probs=86.3
Q ss_pred hhhhhhcC---CCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhh----cccc------------hhHH
Q 007661 243 PHVTSKLG---IKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLS----KFVG------------ETEK 301 (594)
Q Consensus 243 ~~~~~~~g---~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~----~~~g------------~~~~ 301 (594)
+++...+| ++++++++|+||||||||+||.+++.+. ++..+.+++..+.+. +..| ..+.
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~ 1492 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQ 1492 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHH
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHH
Confidence 45666666 8999999999999999999999998775 334566666553321 1122 3456
Q ss_pred HHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccC---CCCCC-CCchHHHHHHHHHHhhcCccccCcEEEEEee
Q 007661 302 NIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSR---GSTRD-GTGVHDSIVNQLLTKIDGVESLNNVLLIGMT 374 (594)
Q Consensus 302 ~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~---~~~~~-~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~t 374 (594)
.++.++..++... |++||||+++.+.+.. +...+ ......+++.++|..|.+.....++.+|.+-
T Consensus 1493 ~l~~~~~lvr~~~--------~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1493 ALEICDALARSGA--------VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHHHHHHHHTC--------CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHHHHHHHHhcCC--------CCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 6676776776654 5599999999998742 22111 1122467889999999988877787777553
No 144
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.43 E-value=3.3e-07 Score=95.94 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=43.2
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc----ccccccchhhhHHHHHHHhh
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~----~vG~sE~~~~~~ir~~F~~A 590 (594)
..+..++||+||||||||++|+++|..++.+|+.++++.+ |+|++... .++++|..+
T Consensus 69 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~ 129 (376)
T 1um8_A 69 ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVEN---ILTRLLQAS 129 (376)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTH---HHHHHHHHT
T ss_pred ccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHH---HHHHHHhhc
Confidence 3456789999999999999999999999999999998876 46765433 377777654
No 145
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.41 E-value=2.1e-07 Score=87.75 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=26.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhCC
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLNG 280 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~~ 280 (594)
+++..+++|+|||||||||++|.++++.+.+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444568999999999999999999999854
No 146
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.35 E-value=3.8e-07 Score=92.35 Aligned_cols=55 Identities=24% Similarity=0.411 Sum_probs=45.3
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc----ccccccchhhhHHHHHHHhh
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES----MIGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~----~vG~sE~~~~~~ir~~F~~A 590 (594)
++.++||+||||||||++|+++|..++.+|+.+++++. |+|..... .++++|..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~ 107 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDS---IIRDLTDSA 107 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTH---HHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHH---HHHHHHHHh
Confidence 45789999999999999999999999999999999886 35644332 388888754
No 147
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.35 E-value=6.3e-07 Score=93.28 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=46.2
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhcC--CCEEEEeccccc---cccccchhhhHHHHHHHhh
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISAESM---IGLHESTKCAQIVKVSECQ 590 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~--~~fi~v~~~e~~---vG~sE~~~~~~ir~~F~~A 590 (594)
.+..|+.++|||||||||||++|+++|.+++ .+|+.+.+++++ ++.+| .+.+.|+++
T Consensus 65 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 126 (368)
T 3uk6_A 65 EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTE-----ALTQAFRRS 126 (368)
T ss_dssp TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHH-----HHHHHHHHS
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhH-----HHHHHHHHH
Confidence 3555678999999999999999999999887 499999999876 44444 377777764
No 148
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.30 E-value=1.2e-07 Score=98.90 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=75.8
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEE
Q 007661 249 LGIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIF 328 (594)
Q Consensus 249 ~g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~i 328 (594)
++++++..++|+||||+||||++++++..+.+. ++.++.++- . ....+..+| + ..++++
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~-~~~~~~~~~--~----~~~~lg~~~------q--------~~~~l~ 222 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK-ALNVNLPLD--R----LNFELGVAI------D--------QFLVVF 222 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE-EECCSSCTT--T----HHHHHGGGT------T--------CSCEEE
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCc-EEEEeccch--h----HHHHHHHhc------c--------hhHHHH
Confidence 478889999999999999999999999987543 222232221 0 011111111 1 237899
Q ss_pred ccchhhhc-cCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCC
Q 007661 329 DEIDAICK-SRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL 398 (594)
Q Consensus 329 DEid~l~~-~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~ 398 (594)
||++.++. .++.... ... . ....+.+.+|| .+.|+++||+++.+ +++.+|+|++..+....
T Consensus 223 dd~~~~~~~~r~l~~~-~~~-~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 223 EDVKGTGGESRDLPSG-QGI-N-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCSTTTTTTCCCC-SHH-H-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHHHHHhhcccc-Ccc-h-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 99999875 2221111 111 0 12344555554 45678889999999 78999999987766644
No 149
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.28 E-value=1.3e-06 Score=78.38 Aligned_cols=50 Identities=14% Similarity=0.028 Sum_probs=39.2
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccccccccchhhhHHHHHHHhhh
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESMIGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~ 591 (594)
...|||+||||||||++|++++..+ +.+|+ ++++.+.-. .. +...|..|.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---~~----~~~~~~~a~ 76 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---PQ----LNDFIALAQ 76 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---SC----HHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---hh----hhcHHHHcC
Confidence 3569999999999999999999987 88999 998875411 22 566666664
No 150
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.28 E-value=7.4e-07 Score=96.12 Aligned_cols=58 Identities=22% Similarity=0.177 Sum_probs=42.0
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc----------CCCEEEEeccccccccccchhhhHHHHHHHhhhcC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESMIGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~----------~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
....++||+||||||||++|+++|... +.+|+.++.+..|.|+.|.. ++.+|+.++++
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~----~~~~~~~~~~~ 266 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDR----LKKVMDEIRQA 266 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTT----HHHHHHHHHTC
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHH----HHHHHHHHHhc
Confidence 345679999999999999999999885 89999999887788998876 99999988753
No 151
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.24 E-value=1.4e-06 Score=95.64 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=42.8
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc------------cccccccchhhhHHHHHHHhhhc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE------------SMIGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e------------~~vG~sE~~~~~~ir~~F~~A~~ 592 (594)
+...+||+||||||||+||+++|..++.+|+.|.... .|+|..... ++..|..|..
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~----~~~~~~~a~~ 174 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGR----IIQGMKKAGK 174 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------C----HHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchH----HHHHHHHhhc
Confidence 6678999999999999999999999999999998765 247777776 8889988854
No 152
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.14 E-value=8.6e-07 Score=79.45 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=32.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
..+|||+||||||||++|++++.+++ +|+.++++++
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence 34699999999999999999999998 9999988764
No 153
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.12 E-value=1.8e-06 Score=80.14 Aligned_cols=56 Identities=18% Similarity=0.092 Sum_probs=43.6
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc----------CCCEEEEeccccc-----cccccchhhhHHHHHHHhhh
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESM-----IGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~----------~~~fi~v~~~e~~-----vG~sE~~~~~~ir~~F~~A~ 591 (594)
..+.++||+||||||||++|+++|.+. +.+++.++.++.+ .|..+.. ++++|+.+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 111 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEER----LKGVLNDLA 111 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHH----HHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHH----HHHHHHHHh
Confidence 446779999999999999999999885 8999999887765 3333333 777777553
No 154
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=1.5e-06 Score=80.45 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=43.9
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc----------CCCEEEEeccccc-----cccccchhhhHHHHHHHhhhc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAESM-----IGLHESTKCAQIVKVSECQFS 592 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~----------~~~fi~v~~~e~~-----vG~sE~~~~~~ir~~F~~A~~ 592 (594)
....++||+||||||||++|+++|.+. +.+++.+....++ .|..+.. ++++|..+.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 112 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEER----LKSILKEVQD 112 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHH----HHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHH----HHHHHHHHHh
Confidence 446689999999999999999999886 8899999877664 3333333 7777776654
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.10 E-value=4.2e-06 Score=85.97 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=35.6
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
.++.++||+||||||||++|+++|.+.+.+|+.++++..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 456679999999999999999999999999999998765
No 156
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.05 E-value=3.2e-06 Score=90.42 Aligned_cols=49 Identities=24% Similarity=0.248 Sum_probs=41.1
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccccccccchhhhHHHHHHHhhh
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESMIGLHESTKCAQIVKVSECQF 591 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~ 591 (594)
.++||+||||||||++|+++|..++.+|+.++... .+... ++++|+.|+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~----~~~~~----ir~~~~~a~ 99 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT----SGVKE----IREAIERAR 99 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT----CCHHH----HHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc----CCHHH----HHHHHHHHH
Confidence 57999999999999999999999999999998642 23333 888888876
No 157
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.97 E-value=8.7e-06 Score=82.42 Aligned_cols=41 Identities=32% Similarity=0.462 Sum_probs=35.4
Q ss_pred CCCcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEecccc
Q 007661 530 KGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES 570 (594)
Q Consensus 530 ~~~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~ 570 (594)
..+|...+||+||||||||++|+++|..+ +.+|+.++.++.
T Consensus 43 ~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 43 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 44566789999999999999999999887 677999998765
No 158
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.96 E-value=3.9e-05 Score=75.58 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+.++++||||||||||++|+++|+.+
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34579999999999999999999975
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.94 E-value=3.2e-06 Score=85.96 Aligned_cols=39 Identities=18% Similarity=0.098 Sum_probs=34.6
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc----------CCCEEEEecccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS----------DFPFVKIISAES 570 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~----------~~~fi~v~~~e~ 570 (594)
.++.+++||||||||||+++++++.+. ++.++.|++..+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 467889999999999999999999887 578999998774
No 160
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.94 E-value=8.5e-06 Score=83.01 Aligned_cols=39 Identities=31% Similarity=0.360 Sum_probs=35.1
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
.++.++||+||||||||++|+++|.+++.+|+.+.++..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 74 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI 74 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTC
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 345679999999999999999999999999999988765
No 161
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=5.1e-06 Score=90.70 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=36.1
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
++.++||+||||||||++|+++|.+++++++.++.++..
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 567899999999999999999999999999999998763
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.93 E-value=6.1e-06 Score=84.35 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=35.2
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
....++|||||||||||+||+++|.+. +.+|+.++..+..
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 345679999999999999999999988 9999999887653
No 163
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.93 E-value=3.1e-06 Score=83.47 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=26.6
Q ss_pred HHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc
Q 007661 525 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 525 ~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
.+......+..++|||||||||||++|++||+..
T Consensus 95 ~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 95 GWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3434333446789999999999999999999864
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.93 E-value=8.9e-06 Score=76.95 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=33.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAESM 571 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~~ 571 (594)
+.+++|+||||||||+||+++|.++ +.+++.+..++++
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~ 94 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELF 94 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHH
Confidence 3789999999999999999999876 7889888888754
No 165
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.92 E-value=1.1e-05 Score=82.84 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 515 IYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
++..+...++.....+ .++..++|+||||||||+||+++|.+.+.+|....|+-..
T Consensus 33 ~~~~l~~~i~~~~~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 33 VKKKLSLALEAAKMRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHHHHHHHHHHHHhcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 3444433344333222 3556799999999999999999999999999888877543
No 166
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.91 E-value=9.3e-05 Score=68.73 Aligned_cols=24 Identities=33% Similarity=0.668 Sum_probs=21.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.+.|.||+|+||||+++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998873
No 167
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.86 E-value=1e-05 Score=75.15 Aligned_cols=56 Identities=14% Similarity=0.017 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc----CCCEEEEecccc
Q 007661 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS----DFPFVKIISAES 570 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~----~~~fi~v~~~e~ 570 (594)
.++++..+..+. ......+..+++|+||||||||+||+++|... |..++.+..+++
T Consensus 19 ~~~~~~~~~~~~---~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 19 QNRALLTIRVFV---HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp HHHHHHHHHHHH---HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred HHHHHHHHHHHH---HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 344444444333 33444556789999999999999999999765 777777766655
No 168
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.85 E-value=1.9e-05 Score=78.21 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=33.0
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcC---CCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSD---FPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~---~~fi~v~~~e~ 570 (594)
..++||+||||||||++|+++|..+. .+|+.++.+++
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 35799999999999999999998875 78999998765
No 169
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.80 E-value=0.00019 Score=73.86 Aligned_cols=163 Identities=15% Similarity=0.069 Sum_probs=100.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCC---CcEEEecchhhhcccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEcc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGM---EPKIVNGPEVLSKFVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDE 330 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~---~~~~v~~~~l~~~~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDE 330 (594)
+...|||||+|.||++.++.+++.+.+. ....+. +-+ ...++++++.+... |..+ ...|++|||
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~-plf~---~~kvvii~~ 84 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAM-SLFA---SRQTLLLLL 84 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHH-HHCC---SCEEEEEEC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCc-CCcc---CCeEEEEEC
Confidence 4478999999999999999999876321 111111 111 13456677666543 2222 245999999
Q ss_pred chh-hhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc------ccccHHhhCCCCccceeecCCCCHHH
Q 007661 331 IDA-ICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK------DMLDEALLRPGRLEVQVEISLPDENG 403 (594)
Q Consensus 331 id~-l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~------~~ld~al~r~gRf~~~i~i~~P~~~~ 403 (594)
+|. +. ....+.|+..++.. ..++++|.+++.+ ..+-+++.+++ ..+++..|+.++
T Consensus 85 ~~~kl~-------------~~~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~sr~---~~~~~~~l~~~~ 146 (343)
T 1jr3_D 85 PENGPN-------------AAINEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALANRS---VQVTCQTPEQAQ 146 (343)
T ss_dssp CSSCCC-------------TTHHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTTTC---EEEEECCCCTTH
T ss_pred CCCCCC-------------hHHHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHhCc---eEEEeeCCCHHH
Confidence 997 52 12345566666543 2345555444442 34677887744 378999999999
Q ss_pred HHHHHHHHHhccccCCCCCCcccHHHHHHHcCCCCHHHHHHHHHHHHH
Q 007661 404 RLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVAKSAVS 451 (594)
Q Consensus 404 r~~IL~~~~~~~~~~~~l~~~~~l~~la~~t~g~sg~dl~~l~~~A~~ 451 (594)
..+.++..++.... -.++..+..|++.+.| +.+++.+.+.....
T Consensus 147 l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 147 LPRWVAARAKQLNL---ELDDAANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp HHHHHHHHHHHTTC---EECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 99888887765431 1233456777776654 55666555555443
No 170
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.80 E-value=8.8e-06 Score=83.38 Aligned_cols=33 Identities=33% Similarity=0.311 Sum_probs=31.3
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
.++|||||||||||+||+++|...+.+|+.+..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 479999999999999999999999999999986
No 171
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.77 E-value=9.4e-05 Score=76.30 Aligned_cols=116 Identities=16% Similarity=0.275 Sum_probs=65.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhc-------------c---cchhHHHHHHHHHHHH
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSK-------------F---VGETEKNIRDLFADAE 311 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~-------------~---~g~~~~~i~~lf~~a~ 311 (594)
|+++..-++|+||||+|||+++.+++..+ .+..+.+++..+.... + ....+..+ ...+...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l-~~~~~l~ 135 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQAL-EIVDELV 135 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHH-HHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHH-HHHHHHh
Confidence 45666779999999999999999999875 2345666766543220 0 01112222 2222221
Q ss_pred hhccccCCCCCcEEEEEccchhhhccC--CCCCCCC--chHHHHHHHHHHhhcCccccCcEEEEEe
Q 007661 312 NDQRTRGDQSDLHVIIFDEIDAICKSR--GSTRDGT--GVHDSIVNQLLTKIDGVESLNNVLLIGM 373 (594)
Q Consensus 312 ~~~~~~~~~~~~~Il~iDEid~l~~~~--~~~~~~~--~~~~~~v~~Ll~~ld~~~~~~~v~vI~~ 373 (594)
.. ..+.+++||.+..+.+.. .+..++. ....+.+.+++..+..+....++.||.+
T Consensus 136 ~~-------~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 136 RS-------GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp HT-------SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hh-------cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 11 135699999999988621 1110111 1234556677666666555556655554
No 172
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.74 E-value=3.2e-05 Score=74.67 Aligned_cols=38 Identities=24% Similarity=0.150 Sum_probs=32.1
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcC---CCEEEEecccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSD---FPFVKIISAES 570 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~---~~fi~v~~~e~ 570 (594)
+..++||+||||||||++|+++|.+.. .+++.+..++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 457899999999999999999997654 78888877654
No 173
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.73 E-value=3e-05 Score=79.11 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=34.0
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
.++..+|++||||||||++|+++|++.+.+|+.+++++
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 44556899999999999999999999999999999765
No 174
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.70 E-value=6e-05 Score=73.11 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--C------CCCcEEEecch
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--N------GMEPKIVNGPE 290 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~------~~~~~~v~~~~ 290 (594)
|+++..-++|+||||+|||++++.++... . ....+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 56677789999999999999999999852 1 23455666544
No 175
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.68 E-value=8.4e-05 Score=71.37 Aligned_cols=38 Identities=32% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEe
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVN 287 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~ 287 (594)
|+++..-++|+||||+|||++++.++..+ .+..+.+++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46667779999999999999999999654 233444443
No 176
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.68 E-value=0.00012 Score=75.97 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=65.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhcc----cc-----------hhHHHHHHHHHHHHh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSKF----VG-----------ETEKNIRDLFADAEN 312 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~~----~g-----------~~~~~i~~lf~~a~~ 312 (594)
|+++..-++|+||||+|||++|..++... .+..+.+++...-.... .| .+...+.+..+....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56677789999999999999999988765 34456666654322111 01 111222233332222
Q ss_pred hccccCCCCCcEEEEEccchhhhccCCCC-C-CC--CchHHHHHHHHHHhhcCccccCcEEEEEee
Q 007661 313 DQRTRGDQSDLHVIIFDEIDAICKSRGST-R-DG--TGVHDSIVNQLLTKIDGVESLNNVLLIGMT 374 (594)
Q Consensus 313 ~~~~~~~~~~~~Il~iDEid~l~~~~~~~-~-~~--~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~t 374 (594)
. ..+.+|+||.+..+.+..... . ++ .+...+.+.+++..+..+-...++.||.+.
T Consensus 150 ~-------~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 S-------GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp T-------TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred c-------CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 1 135699999999998532211 0 00 012224455666666544444566666653
No 177
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.68 E-value=3.6e-05 Score=77.99 Aligned_cols=38 Identities=34% Similarity=0.402 Sum_probs=33.3
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEecccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES 570 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~ 570 (594)
...++||+||||||||++|++++..+ +.+|+.++++.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 35679999999999999999999865 789999998765
No 178
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.67 E-value=3.3e-05 Score=78.43 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=33.0
Q ss_pred cceEEEeecCCCCchHHHHHHHHhh----cCCCEEEEeccccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGID----SDFPFVKIISAESM 571 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~----~~~~fi~v~~~e~~ 571 (594)
+..+++||||||||||.||+++|.+ .|.+++.+..|+++
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4678999999999999999999974 45888888877653
No 179
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.66 E-value=7e-05 Score=71.43 Aligned_cols=40 Identities=33% Similarity=0.413 Sum_probs=31.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
|+++..-++|+||||+|||++++.++. ..+..+.+++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 467777899999999999999999998 4455566666543
No 180
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.65 E-value=4.4e-05 Score=79.48 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=33.4
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc-----------CCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS-----------DFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~-----------~~~fi~v~~~e 569 (594)
.++.+++|+||||||||++|+++|.+. +.+|+.+++++
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 445689999999999999999999987 99999998654
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.62 E-value=4.2e-05 Score=81.63 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=33.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc-----CCCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~ 570 (594)
..+++||||||||||+||+++|++. +.+++.+.+++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 5679999999999999999999988 899999988775
No 182
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.62 E-value=7e-05 Score=71.95 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=25.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
|+++..-+.|.||+|+||||+++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 56777789999999999999999999754
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.62 E-value=0.00016 Score=70.26 Aligned_cols=26 Identities=42% Similarity=0.496 Sum_probs=23.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHH
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIG 275 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia 275 (594)
|+++..-+.|.||+|+||||+++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56677789999999999999999998
No 184
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.59 E-value=3.8e-05 Score=71.38 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=30.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
...|+|.||||||||++|+.||...|++|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 456999999999999999999999999999764
No 185
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.55 E-value=4.5e-05 Score=72.03 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=30.7
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
..+...|+|.||||||||++|++||...|++|+..+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 345567999999999999999999999999998654
No 186
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.55 E-value=0.00013 Score=76.64 Aligned_cols=123 Identities=13% Similarity=0.169 Sum_probs=62.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC--------CCCcEEEecchhhh--------cccch---------------
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEPKIVNGPEVLS--------KFVGE--------------- 298 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~--------~~~~~~v~~~~l~~--------~~~g~--------------- 298 (594)
|+.+..-++|+||||||||+|++.++-... ....+++++.+... ..+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 677788899999999999999997764321 12355666544211 00010
Q ss_pred hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCC
Q 007661 299 TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNR 376 (594)
Q Consensus 299 ~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~ 376 (594)
.......+...+..... ...|.+|+||++-.++.......++.....+.+.+++..+..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~----~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMS----ESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHH----HSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHH----hcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 00111122222211100 013679999999988754322111111122334555555554444446777776654
No 187
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.54 E-value=6.3e-05 Score=70.89 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=25.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
..++|||||||||||++|.++|+..+-..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 4579999999999999999999887644433
No 188
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.54 E-value=3.3e-05 Score=80.28 Aligned_cols=39 Identities=23% Similarity=0.157 Sum_probs=34.5
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc---------CCCEEEEecccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIISAES 570 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~---------~~~fi~v~~~e~ 570 (594)
..+.+++|+||||||||++|++++.+. +.+|+.+++++.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 455689999999999999999999888 899999997753
No 189
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.53 E-value=0.00011 Score=75.85 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecc
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGP 289 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~ 289 (594)
|+++..-++|+||||+|||+++..++... .+..+.+++..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 56667779999999999999999998665 23455666654
No 190
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.52 E-value=6.8e-05 Score=69.10 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.7
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
.-|+|.||||||||++|++||...+.+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 458999999999999999999999999987654
No 191
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.51 E-value=0.0001 Score=69.80 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=29.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhc-----CCCEEEEecccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAES 570 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~ 570 (594)
++||+||||||||++|+++|.+. ...++.+..++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 49999999999999999999864 567888876543
No 192
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.51 E-value=6.2e-05 Score=67.76 Aligned_cols=37 Identities=19% Similarity=0.045 Sum_probs=31.5
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEeccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAE 569 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e 569 (594)
+...++|+||+|||||+|++++|... |.+.+.+.+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 55679999999999999999999766 77788887664
No 193
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.49 E-value=0.00014 Score=74.23 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC--------CCCcEEEecch
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEPKIVNGPE 290 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~--------~~~~~~v~~~~ 290 (594)
|+++..-++|+||||+|||+++..++.... +..+.+++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 567777899999999999999999997642 23456666543
No 194
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.49 E-value=0.00019 Score=72.56 Aligned_cols=54 Identities=9% Similarity=-0.012 Sum_probs=39.9
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc------CCCEEEEeccccccccccchhhhHHHHHHHhhhcC
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS------DFPFVKIISAESMIGLHESTKCAQIVKVSECQFSG 593 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~------~~~fi~v~~~e~~vG~sE~~~~~~ir~~F~~A~~~ 593 (594)
...+|||||||||||++|+++|..+ ..+|+.++.+.. ..++..||++.+.|+.+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~------~~~id~ir~li~~~~~~ 77 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE------NIGIDDIRTIKDFLNYS 77 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS------CBCHHHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC------CCCHHHHHHHHHHHhhc
Confidence 4479999999999999999999863 457766664321 12344589999988754
No 195
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.47 E-value=0.00019 Score=73.86 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC--------CCCcEEEecch
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN--------GMEPKIVNGPE 290 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~--------~~~~~~v~~~~ 290 (594)
|+++..-++|+||||+|||++|..++.... +..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 567777799999999999999999998631 33455666543
No 196
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.46 E-value=0.00022 Score=71.71 Aligned_cols=118 Identities=11% Similarity=0.179 Sum_probs=62.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC----CCCcEEEecchhhh----cccc-----------hhHHHH-HHHHHH
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN----GMEPKIVNGPEVLS----KFVG-----------ETEKNI-RDLFAD 309 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~----~~~~~~v~~~~l~~----~~~g-----------~~~~~i-~~lf~~ 309 (594)
|+.+. -++++||||+|||+|+-.++.... +..+.+++..+-+. ..+| .+...+ .++.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 589999999999999888776552 34566776654322 0011 111121 222222
Q ss_pred HHhhccccCCCCCcEEEEEccchhhhccCCCC-C-CC----CchHHHHHHHHHHhhcCccccCcEEEEEe
Q 007661 310 AENDQRTRGDQSDLHVIIFDEIDAICKSRGST-R-DG----TGVHDSIVNQLLTKIDGVESLNNVLLIGM 373 (594)
Q Consensus 310 a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~-~-~~----~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~ 373 (594)
...- ....|.+|+||-+.++.++.+-. . ++ +....+.+.+.|..+.++-...++.+|.+
T Consensus 104 l~~i-----~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 104 LDAI-----ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HHTC-----CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHh-----hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 2110 12347899999999998643211 1 11 01234556666666555444456655543
No 197
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.45 E-value=9.3e-05 Score=69.02 Aligned_cols=35 Identities=17% Similarity=0.292 Sum_probs=30.8
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.++.-|+|.||||||||++|+.||...+++++..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D 37 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKD 37 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence 45567999999999999999999999999988753
No 198
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.44 E-value=0.00019 Score=74.22 Aligned_cols=118 Identities=20% Similarity=0.346 Sum_probs=63.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecchhhhc----ccc-----------hhHHHHHHHHHHHHh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPEVLSK----FVG-----------ETEKNIRDLFADAEN 312 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~l~~~----~~g-----------~~~~~i~~lf~~a~~ 312 (594)
|+++..-++|+||||+|||++|..++... .+..+.+++...-... ..| .....+.++++....
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46677789999999999999999998765 3445667766322110 001 112233344433322
Q ss_pred hccccCCCCCcEEEEEccchhhhccCC--CCCCCC--chHHHHHHHHHHhhcCccccCcEEEEEee
Q 007661 313 DQRTRGDQSDLHVIIFDEIDAICKSRG--STRDGT--GVHDSIVNQLLTKIDGVESLNNVLLIGMT 374 (594)
Q Consensus 313 ~~~~~~~~~~~~Il~iDEid~l~~~~~--~~~~~~--~~~~~~v~~Ll~~ld~~~~~~~v~vI~~t 374 (594)
.. .+.+|+||.+..+.+... ...++. +...+.+.+++..+..+-...++.||.+.
T Consensus 139 ~~-------~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 139 SG-------AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp HT-------CCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred cc-------CCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 11 255999999999875211 000000 01223444555554443334466666543
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.44 E-value=0.00018 Score=74.86 Aligned_cols=35 Identities=26% Similarity=0.095 Sum_probs=31.2
Q ss_pred EEEeecCCCCchHHHHHHHHhhc----CCCEEEEecccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDS----DFPFVKIISAES 570 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~----~~~fi~v~~~e~ 570 (594)
.++|+||||||||+++++++.+. +.+++.++++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 79999999999999999999887 788999986553
No 200
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.37 E-value=0.00022 Score=65.62 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=19.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHH
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQ 273 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ 273 (594)
++++.-+.|.||+|+||||++++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 34556689999999999999994
No 201
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=0.0001 Score=67.36 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=28.1
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
-|+|.||||||||++|+.||...+++|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999999998654
No 202
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.37 E-value=8.2e-05 Score=80.39 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.4
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCC--CEEEEe
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDF--PFVKII 566 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~--~fi~v~ 566 (594)
.++||+||||||||+||+++|..++. +|..+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~ 75 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLM 75 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEEC
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 57999999999999999999998843 444443
No 203
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.37 E-value=7.4e-05 Score=69.62 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=29.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHhh-cCCCEEEEe
Q 007661 534 LVTCLLEGPSGSGKTALAATAGID-SDFPFVKII 566 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~-~~~~fi~v~ 566 (594)
...|+|.|+||||||++|+.||.. .|++|+.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 456999999999999999999999 798888754
No 204
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.33 E-value=9.5e-05 Score=68.10 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=27.7
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.|+|.||||||||++|++||...+++|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 489999999999999999999999998864
No 205
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.33 E-value=0.00018 Score=69.01 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+..+||+||||||||++|+++|.+.+.
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 347999999999999999999987654
No 206
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.32 E-value=8.8e-05 Score=68.85 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=28.3
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
|+|.|+||||||++|+.||...|++|+..+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 899999999999999999999999998865
No 207
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.31 E-value=0.00012 Score=70.25 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=29.5
Q ss_pred CCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 530 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 530 ~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
..+.++-|+|.|||||||+|.|+.||...|++.|+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 34555678999999999999999999999877665
No 208
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.31 E-value=0.00028 Score=72.30 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=24.8
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+.+..+|||||||||||++|+++|.....
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 45567999999999999999999987553
No 209
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.31 E-value=0.00012 Score=67.64 Aligned_cols=34 Identities=29% Similarity=0.453 Sum_probs=30.0
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.+..|+|.||||||||++|++||...+++|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 3456999999999999999999999999988764
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.31 E-value=0.00019 Score=66.93 Aligned_cols=40 Identities=28% Similarity=0.260 Sum_probs=33.5
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
..+..-+.|.|||||||||+++.||...+.+.+.+++-++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3455668999999999999999999988888888876543
No 211
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=97.30 E-value=0.00086 Score=53.41 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=48.6
Q ss_pred HHHHHHHHhccCcccCCcEEEEEEcCeeEEEEEEEeeecCccccccccceeEcCCcEEEEEe
Q 007661 128 LANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAVEGQEKSNALERGIITNETYFVFEA 189 (594)
Q Consensus 128 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ 189 (594)
+..++++.|.|+++..||.+.+.+.|..+.|.|.+++| . ..+++++|.|.+..
T Consensus 29 ~~~~lk~~L~grPV~~GD~I~i~~~G~~i~F~Vv~t~P--------~-~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 29 FVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAYP--------S-PLRVEDRTKITLVT 81 (83)
T ss_dssp HHHHHHHHHTTSEECTTCEEEEEETTEEEEEEEEEEES--------S-SEECCTTSEEEECC
T ss_pred HHHHHHHHHCCCCccCCCEEEEeeCCCEEEEEEEEecC--------c-cEEECCCcEEEEEe
Confidence 47999999999999999999999999999999999999 5 88999999998853
No 212
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.30 E-value=0.00017 Score=68.05 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=29.8
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
..+.-|+|.||||||||++|+.||...+++++.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3345699999999999999999999999998876
No 213
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.29 E-value=6.7e-05 Score=77.08 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=23.6
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
..++|||||||||||++|+++|..++
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 34699999999999999999999876
No 214
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.29 E-value=0.0004 Score=71.68 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=26.7
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 249 LGIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 249 ~g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.|+++..-+.|+||||+|||++++.++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 367777789999999999999999999876
No 215
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.29 E-value=0.00012 Score=72.12 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=29.8
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
-+++.||||||||+||++||...+..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999999866
No 216
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.28 E-value=0.00012 Score=69.74 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=28.0
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
-|+|.|||||||+|.|+.||...|++.|+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 378999999999999999999999999985
No 217
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.28 E-value=0.00013 Score=69.98 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=29.5
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+...|+|.||||||||++|+.||...+++++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 345689999999999999999999999988876
No 218
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.27 E-value=0.00013 Score=69.83 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=29.5
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
++.-|+|.||||||||++|+.||...+++++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 345699999999999999999999999988775
No 219
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.27 E-value=0.0001 Score=76.42 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=33.5
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc------CCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS------DFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~------~~~fi~v~~~e 569 (594)
.++..++|+||||||||+||+++|.+. +.+++.+++++
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 445679999999999999999999888 89999998664
No 220
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.27 E-value=0.0002 Score=72.31 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=31.2
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhcC--CCEEEEeccccc
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISAESM 571 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~~--~~fi~v~~~e~~ 571 (594)
..+...+||+||||||||+||.++|.+.| ..|++...+|.+
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v 162 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL 162 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhh
Confidence 34445679999999999999999998654 457777555553
No 221
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.25 E-value=0.0044 Score=68.36 Aligned_cols=167 Identities=14% Similarity=0.103 Sum_probs=90.3
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh----CC--CCcEEEecchh---
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML----NG--MEPKIVNGPEV--- 291 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l----~~--~~~~~v~~~~l--- 291 (594)
+.|.+.++++| .+++... -..++-++++||+|+|||++|+.+++.. .. ..+..++....
T Consensus 126 ~vGR~~~l~~L-~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 126 FVTRKKLVNAI-QQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKS 193 (591)
T ss_dssp CCCCHHHHHHH-HHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHH
T ss_pred ecccHHHHHHH-HHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchH
Confidence 89999999998 5554321 1234568999999999999999997532 11 12344443221
Q ss_pred --hhcc------cc----------hhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHH
Q 007661 292 --LSKF------VG----------ETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVN 353 (594)
Q Consensus 292 --~~~~------~g----------~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~ 353 (594)
.... .+ .....+...+...-... ..+.+|+||+++...
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~LLVLDdv~~~~------------------ 249 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRK------HPRSLLILDDVWDSW------------------ 249 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHT------CTTCEEEEEEECCHH------------------
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccC------CCCeEEEEeCCCCHH------------------
Confidence 1100 00 01111222222211110 024599999997421
Q ss_pred HHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeec---CCCCHHHHHHHHHHHHhccccCCCCCCcccHHHH
Q 007661 354 QLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEI---SLPDENGRLQILQIHTNKMKENSFLAPDVNLQEL 430 (594)
Q Consensus 354 ~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i---~~P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~l 430 (594)
.+..+ ..+..||.||....... .. .+ ..+++ +..+.++-.++|..+...-. .........+
T Consensus 250 -~l~~l-----~~~~~ilvTsR~~~~~~-~~--~~---~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i 313 (591)
T 1z6t_A 250 -VLKAF-----DSQCQILLTTRDKSVTD-SV--MG---PKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSI 313 (591)
T ss_dssp -HHHTT-----CSSCEEEEEESCGGGGT-TC--CS---CEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHH
T ss_pred -HHHHh-----cCCCeEEEECCCcHHHH-hc--CC---CceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHH
Confidence 11222 23566777776543211 11 11 23444 35788999999987764311 1113357889
Q ss_pred HHHcCCCCH
Q 007661 431 AARTKNYSG 439 (594)
Q Consensus 431 a~~t~g~sg 439 (594)
++.+.|...
T Consensus 314 ~~~~~G~PL 322 (591)
T 1z6t_A 314 IKECKGSPL 322 (591)
T ss_dssp HHHHTTCHH
T ss_pred HHHhCCCcH
Confidence 999988654
No 222
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.25 E-value=0.00011 Score=74.32 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=30.1
Q ss_pred EEEeecCCCCchHHHHHHHHhhc-----CCCEEEEecccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAES 570 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~ 570 (594)
++|||||||||||++|+++|.+. +.+|+.++.++.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 39999999999999999999885 556888887764
No 223
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.23 E-value=0.00027 Score=72.53 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=29.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhc------CCCEEEEecccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDS------DFPFVKIISAES 570 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~------~~~fi~v~~~e~ 570 (594)
++||+||||||||++|+++|.+. ...++.++.++.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 100 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE 100 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc
Confidence 39999999999999999999874 457888876653
No 224
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.23 E-value=0.00019 Score=65.50 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=28.5
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.|+|.|+||||||++|+.||...|++|+..+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 5899999999999999999999999998753
No 225
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.22 E-value=0.00017 Score=66.06 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=26.6
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
.-+.|.||||||||++++.||...+.+|+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 348999999999999999999999887664
No 226
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.22 E-value=0.00018 Score=67.05 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=28.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.-|+|.|+||||||++|+.||...+++++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999999888764
No 227
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.21 E-value=0.00017 Score=65.78 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=27.1
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
-|+|.||||||||++|+.| ...|++++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 9999999996
No 228
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.21 E-value=0.00017 Score=67.24 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l 278 (594)
+-++++||+|+||||++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999997666554
No 229
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.21 E-value=0.00024 Score=69.75 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=33.8
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEecccc
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAES 570 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~ 570 (594)
..++.-++|.||||||||++|+.||...+.+++.+++-.+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4556779999999999999999999998877777777554
No 230
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=0.00021 Score=72.48 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=28.6
Q ss_pred EEEeecCCCCchHHHHHHHHhhc-----CCCEEEEecccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAES 570 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~ 570 (594)
++||+||||||||++|+++|.+. ..+++.+++++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 49999999999999999999874 245777776543
No 231
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.19 E-value=0.00018 Score=66.78 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=28.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.-|+|.||||||||++|+.||...|++++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 44689999999999999999999998877664
No 232
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.19 E-value=0.0002 Score=69.03 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=28.9
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
++.-|+|.||||||||++|+.||...+++++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345699999999999999999999999888765
No 233
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.18 E-value=0.0002 Score=66.87 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=29.1
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
++.-|.|.||||||||++|+.||...+++++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345699999999999999999999999888765
No 234
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.17 E-value=0.0044 Score=74.30 Aligned_cols=171 Identities=15% Similarity=0.071 Sum_probs=95.1
Q ss_pred CccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhh---CCC---CcEEEecchhhh
Q 007661 220 GIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKML---NGM---EPKIVNGPEVLS 293 (594)
Q Consensus 220 ~igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l---~~~---~~~~v~~~~l~~ 293 (594)
.+.|.++++++| .+.+... -..++-|.|+|+.|+|||+||+.+++.. ... .++.++......
T Consensus 125 ~~vgR~~~~~~l-~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 125 IFVTRKKLVHAI-QQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SCCCCHHHHHHH-HHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred eeccHHHHHHHH-HHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 389999999998 5544221 1234568899999999999999998652 211 133444332100
Q ss_pred -----c----------------ccchhHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHH
Q 007661 294 -----K----------------FVGETEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIV 352 (594)
Q Consensus 294 -----~----------------~~g~~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v 352 (594)
. ........+.+.+....... ..+.+|+||+++...
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~LlvlDd~~~~~----------------- 249 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK------HPRSLLILDDVWDPW----------------- 249 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS------SCSCEEEEESCCCHH-----------------
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc------CCCEEEEEecCCCHH-----------------
Confidence 0 00011122222222221111 114599999998531
Q ss_pred HHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCC-CCHHHHHHHHHHHHhccccCCCCCCcccHHHHH
Q 007661 353 NQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISL-PDENGRLQILQIHTNKMKENSFLAPDVNLQELA 431 (594)
Q Consensus 353 ~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~-P~~~~r~~IL~~~~~~~~~~~~l~~~~~l~~la 431 (594)
++ +.+ ..+..||.||..+...... ......+.++. ++.++-.++|..+..... ........+++
T Consensus 250 -~~----~~~--~~~~~ilvTtR~~~~~~~~----~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~ 314 (1249)
T 3sfz_A 250 -VL----KAF--DNQCQILLTTRDKSVTDSV----MGPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSII 314 (1249)
T ss_dssp -HH----TTT--CSSCEEEEEESSTTTTTTC----CSCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHH
T ss_pred -HH----Hhh--cCCCEEEEEcCCHHHHHhh----cCCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHH
Confidence 11 111 2355778888765432111 12234677876 788999999987663322 11223467899
Q ss_pred HHcCCCCHH
Q 007661 432 ARTKNYSGA 440 (594)
Q Consensus 432 ~~t~g~sg~ 440 (594)
+.+.|...+
T Consensus 315 ~~~~glPLa 323 (1249)
T 3sfz_A 315 KECKGSPLV 323 (1249)
T ss_dssp HHTTTCHHH
T ss_pred HHhCCCHHH
Confidence 999887643
No 235
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.17 E-value=0.00067 Score=67.50 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
|+.+..-++|+||||+||||+++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56677779999999999999999998755
No 236
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.16 E-value=0.00023 Score=71.92 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=29.5
Q ss_pred EEeecCCCCchHHHHHHHHhhc-----CCCEEEEecccc
Q 007661 537 CLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAES 570 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~ 570 (594)
+|||||||||||++|+++|.+. +.+++.++.++.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 9999999999999999999874 567888887653
No 237
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.15 E-value=0.00027 Score=71.63 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.2
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
.-+++.||||||||+||+.||...+..+|++++-..|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 4689999999999999999999999999999876554
No 238
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.14 E-value=0.00038 Score=67.93 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=30.9
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
..++.-|+|.||||||||++|+.||...+++++++
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 34677899999999999999999999998888765
No 239
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.14 E-value=0.00026 Score=67.48 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=28.4
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.|+|.||||||||++|+.||...++++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999999999988
No 240
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.14 E-value=0.00023 Score=68.98 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=28.9
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+..|+|.|+||||||++|+.||...+++|+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35699999999999999999999999888775
No 241
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.14 E-value=0.00049 Score=70.10 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=24.8
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKM 277 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~ 277 (594)
|+++..-++|+||||+|||++|..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5677777999999999999999999875
No 242
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.14 E-value=0.00021 Score=66.04 Aligned_cols=30 Identities=33% Similarity=0.289 Sum_probs=23.8
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFV 563 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi 563 (594)
+.-|+|.|+||||||++|+.||...+.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 346899999999999999999999999998
No 243
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.14 E-value=0.0002 Score=65.43 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=28.0
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
-|+|.|+||||||++|+.||...|++++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 4899999999999999999999999888654
No 244
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.14 E-value=0.00019 Score=66.02 Aligned_cols=30 Identities=27% Similarity=0.246 Sum_probs=24.8
Q ss_pred eEEEeecCCCCchHHHHHHHHh-hcCCCEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGI-DSDFPFVK 564 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~-~~~~~fi~ 564 (594)
.-|+|.||||||||++|+.||. ..++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4589999999999999999998 55555554
No 245
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.13 E-value=0.00046 Score=65.00 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=30.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
+.+.+.|+|.|||||||||+++.+++.+. .. +++..++...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~-~~--~i~~d~~~~~ 62 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLN-VP--FIDLDWYIEE 62 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHT-CC--EEEHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcC-CC--EEcchHHHHH
Confidence 44567899999999999999999999984 33 3555555443
No 246
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.12 E-value=0.00048 Score=63.78 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhcccc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFVG 297 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~g 297 (594)
++.|+|.|||||||||+++.+++.++ . .+++..++.....|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~-~--~~i~~d~~~~~~~g 45 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK-R--ILYDSDKEIEKRTG 45 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC-C--CEEEHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-C--CEEEChHHHHHHcC
Confidence 56799999999999999999999984 3 34565555544333
No 247
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.12 E-value=0.00032 Score=65.21 Aligned_cols=32 Identities=22% Similarity=0.211 Sum_probs=28.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.-|+|.|+||||||++|+.||...+++++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45689999999999999999999999888765
No 248
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.11 E-value=0.00058 Score=68.42 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
...|.-|+|.||||+||||+++.+++.+. .....+++..+.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~D~~R 70 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDNDTFK 70 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECTHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechHhH
Confidence 34567799999999999999999999874 245667765443
No 249
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.11 E-value=0.00036 Score=65.75 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=29.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
+.-|+|.||||||||++|+.||...|++++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 456899999999999999999999998887754
No 250
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.0008 Score=67.38 Aligned_cols=36 Identities=28% Similarity=0.301 Sum_probs=29.8
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
..+.-++|.||||||||++|+.|+.+.+..++.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 445679999999999999999999988556666654
No 251
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.09 E-value=0.01 Score=54.65 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=93.3
Q ss_pred CceeEEEeec---C----CcccccccEEEeChhhhcccCCCC-CCceEEEEeC---Cc-EEEEEeeCCCCCCCceeeCHh
Q 007661 11 GVTTMNVINT---P----SADLALTNLAYCSPADLLNFRVPN-SNLFLASVAG---DS-FVLSLASHPSVNKGQIALNSV 78 (594)
Q Consensus 11 ~~~~l~v~~~---p----~~~~~~tn~a~vsp~~~~~l~~~g-~~~~~v~v~g---~~-~v~~~~~~~~~~~~~i~~~~~ 78 (594)
|..++++=.+ | ..++-.+++|.+.|..+.+|--.+ ...-...+.+ ++ ..+-+.. -.-+.|.|+|+.-
T Consensus 16 f~~~~~cy~~s~~~~~~~r~~~~~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlE-FsA~EG~i~lP~w 94 (190)
T 2yuj_A 16 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLE-FVADEGICYLPHW 94 (190)
T ss_dssp CEEEEEEECSTTSSSSSCCSTTTTTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEE-CCCBTTBEECCSH
T ss_pred ccceEEEEehhHcCCcccccccCCCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEE-EecCCCeEEeCHH
Confidence 5556665432 2 246778999999999988753211 1122333432 22 2333333 4457899999999
Q ss_pred hhhccCccCCCeEEEEEeCCCCcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhcc-CcccCCcEEEEEEcCeeEE
Q 007661 79 QRRHAKVSTGDHVSLNRFIPPEDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFIN-QVMTAGQRVVFEYHGNNYI 157 (594)
Q Consensus 79 ~r~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~ 157 (594)
.++++++..||.|.|+....|....++.-..+.+|. +....++.+...+.+ ..++.|+.|.+.+++..|.
T Consensus 95 mm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl---------~i~npKavLE~~LrnfstLT~Gd~I~I~~~~~~y~ 165 (190)
T 2yuj_A 95 MMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFL---------DITNPKAVLENALRNFACLTTGDVIAINYNEKIYE 165 (190)
T ss_dssp HHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHH---------HSSCHHHHHHHHHTTCCEECTTCEEEEESSSCEEE
T ss_pred HHHhcCCCCCCEEEEEEeecCCCcEEEEEECCcccc---------ccccHHHHHHHHHhcCcccccCCEEEEEeCCEEEE
Confidence 999999999999999988877443332211111221 112233444444443 3589999999999999999
Q ss_pred EEEEEeee
Q 007661 158 FTVNGAAV 165 (594)
Q Consensus 158 ~~v~~~~~ 165 (594)
|.|.+++|
T Consensus 166 l~V~e~kP 173 (190)
T 2yuj_A 166 LRVMETKP 173 (190)
T ss_dssp EEEEEESS
T ss_pred EEEEEEcC
Confidence 99999988
No 252
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.09 E-value=0.00029 Score=67.15 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=28.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.|+|.||||||||++|+.||...|+++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999999987
No 253
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.09 E-value=0.0004 Score=63.79 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGP 289 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~ 289 (594)
++-|+|.|+||+||||+++++++.+. ..++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~-~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP-EPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS-SCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-CCeEEeccc
Confidence 35699999999999999999999984 344444443
No 254
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.08 E-value=0.0004 Score=64.06 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=31.5
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEecc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISA 568 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~ 568 (594)
+..-+.|.|++|||||++++.||... |++++.+++-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 45568899999999999999999886 9999988764
No 255
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.08 E-value=0.0003 Score=63.97 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=28.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
.|+|.|+||||||++|+.||...+++++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 4899999999999999999999999998754
No 256
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.08 E-value=0.0029 Score=61.06 Aligned_cols=39 Identities=36% Similarity=0.343 Sum_probs=29.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~ 288 (594)
|+++..-++|+||||+|||+++..++... .+..+.+++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56777789999999999999998887654 2344555543
No 257
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.07 E-value=0.0002 Score=66.50 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=27.0
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcC-----CCEEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSD-----FPFVKI 565 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~-----~~fi~v 565 (594)
.-|+|.||||||||++|+.||...+ ++|+.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 4589999999999999999999877 777763
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.07 E-value=0.00016 Score=74.05 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=28.0
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
...++|.||||||||+++++||...+++|+.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3569999999999999999999999999855
No 259
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=0.00048 Score=70.64 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=26.4
Q ss_pred EEeecCCCCchHHHHHHHHhhcC-----CCEEEEeccc
Q 007661 537 CLLEGPSGSGKTALAATAGIDSD-----FPFVKIISAE 569 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~-----~~fi~v~~~e 569 (594)
+|||||||||||++|+++|.... ..++.++.++
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 99999999999999999998743 3356665553
No 260
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.06 E-value=0.00026 Score=66.27 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=28.3
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.-|.|.||||||||++|+.||...+++++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 45699999999999999999999999877764
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.06 E-value=0.00033 Score=71.31 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=33.5
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
.-|++.||+|||||+||..||...+..||+.++-.+|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvY 77 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVY 77 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTB
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccc
Confidence 4689999999999999999999999999998887654
No 262
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.06 E-value=0.0011 Score=68.40 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
+..+||+||||||||++|+++|...+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 447899999999999999999987654
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.05 E-value=0.0012 Score=61.62 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.|+|.||+|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4589999999999999999998764
No 264
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.05 E-value=0.00033 Score=66.08 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=28.3
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.-|+|.||||||||++|+.||...|+.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 34689999999999999999999999888764
No 265
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.04 E-value=0.00039 Score=69.82 Aligned_cols=38 Identities=32% Similarity=0.274 Sum_probs=34.3
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
+.-+++.||+|||||+||..||...+..+|+.++-.+|
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIY 47 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTB
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccc
Confidence 45688999999999999999999999999999887776
No 266
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.02 E-value=0.0027 Score=69.03 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=53.6
Q ss_pred cEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcc--cccHHhhCCCCccceeecCCCC
Q 007661 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKD--MLDEALLRPGRLEVQVEISLPD 400 (594)
Q Consensus 323 ~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~--~ld~al~r~gRf~~~i~i~~P~ 400 (594)
+.+|+|||++.+....+ ......+.++... ...-++.+|.+|.+|. .|+..++. -|...|.+...+
T Consensus 344 ~ivvVIDE~~~L~~~~~------~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG------KKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEEESCCTTHHHHTC------HHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred cEEEEEeCHHHHhhhhh------HHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 46899999998874321 1223344444444 2345799999999987 78888877 677788999999
Q ss_pred HHHHHHHHH
Q 007661 401 ENGRLQILQ 409 (594)
Q Consensus 401 ~~~r~~IL~ 409 (594)
..+-..||.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877874
No 267
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.01 E-value=0.00045 Score=63.35 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=27.3
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
+..-++|.||||||||++++.||...|..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34568999999999999999999988776655
No 268
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.00 E-value=0.00038 Score=66.37 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=28.6
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.|+|.||||||||++|+.||...|++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999999998
No 269
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.00 E-value=0.00023 Score=68.33 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=28.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.-|+|.||||||||++|+.||...++.++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 34689999999999999999999999877664
No 270
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.99 E-value=0.0021 Score=69.26 Aligned_cols=75 Identities=13% Similarity=0.239 Sum_probs=51.1
Q ss_pred cE-EEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcc--cccHHhhCCCCccceeecCCC
Q 007661 323 LH-VIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKD--MLDEALLRPGRLEVQVEISLP 399 (594)
Q Consensus 323 ~~-Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~--~ld~al~r~gRf~~~i~i~~P 399 (594)
|. +|+|||+..+.... ......++..|... ...-++.+|.+|.+|+ .++..++. .+...|.+...
T Consensus 297 P~ivlvIDE~~~ll~~~------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~ 364 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVS 364 (512)
T ss_dssp CEEEEEEETHHHHHHHH------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCS
T ss_pred CcEEEEEeCHHHHHhhh------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcC
Confidence 54 89999998876311 01122333333333 2234788889999987 58888876 67778899999
Q ss_pred CHHHHHHHHH
Q 007661 400 DENGRLQILQ 409 (594)
Q Consensus 400 ~~~~r~~IL~ 409 (594)
+..+...|+.
T Consensus 365 s~~dsr~ilg 374 (512)
T 2ius_A 365 SKIDSRTILD 374 (512)
T ss_dssp SHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9998888875
No 271
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.95 E-value=0.00035 Score=72.64 Aligned_cols=41 Identities=24% Similarity=0.079 Sum_probs=35.2
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
....+...++|+||||||||+|+++||...+..++.+.+|+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~ 204 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL 204 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc
Confidence 36677788999999999999999999999888887766554
No 272
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.95 E-value=0.00084 Score=65.82 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
...|..|+|.|+||+||||+++.++..+. .....+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHH
Confidence 45667899999999999999999999884 33456666554
No 273
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.93 E-value=0.012 Score=64.26 Aligned_cols=169 Identities=11% Similarity=0.086 Sum_probs=89.5
Q ss_pred cCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH----hhCCCC--cEEEecchhh---
Q 007661 222 GGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGK----MLNGME--PKIVNGPEVL--- 292 (594)
Q Consensus 222 gGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~----~l~~~~--~~~v~~~~l~--- 292 (594)
.|.+.++++| .+++... +-...+-|.++|++|+|||+||+.+++ .....+ .++++.++..
T Consensus 131 ~GR~~~~~~l-~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~ 199 (549)
T 2a5y_B 131 YIREYHVDRV-IKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 199 (549)
T ss_dssp CCCHHHHHHH-HHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred CCchHHHHHH-HHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCC
Confidence 3999999998 4444221 112356789999999999999999996 332221 2233333211
Q ss_pred -----hcc---cch-------------hHHHHHHHHHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHH
Q 007661 293 -----SKF---VGE-------------TEKNIRDLFADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSI 351 (594)
Q Consensus 293 -----~~~---~g~-------------~~~~i~~lf~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~ 351 (594)
... .+. ....+...+...-... ...+|++|+++... .+
T Consensus 200 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~-------kr~LlVLDdv~~~~--------------~~ 258 (549)
T 2a5y_B 200 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDR-------PNTLFVFDDVVQEE--------------TI 258 (549)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTS-------TTEEEEEEEECCHH--------------HH
T ss_pred HHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCC-------CcEEEEEECCCCch--------------hh
Confidence 000 000 0111122222221111 14599999998631 11
Q ss_pred HHHHHHhhcCccccCcEEEEEeeCCcccccHHhhCCCCccceeecCCCCHHHHHHHHHHHHhccccCCCCCCc--ccHHH
Q 007661 352 VNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPD--VNLQE 429 (594)
Q Consensus 352 v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~al~r~gRf~~~i~i~~P~~~~r~~IL~~~~~~~~~~~~l~~~--~~l~~ 429 (594)
.+... .+..||.||+.... .... +.....++++..+.++-.++|..+..... ..++ ....+
T Consensus 259 --~~~~~-------~gs~ilvTTR~~~v-~~~~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~----~~~~~~~~~~~ 321 (549)
T 2a5y_B 259 --RWAQE-------LRLRCLVTTRDVEI-SNAA---SQTCEFIEVTSLEIDECYDFLEAYGMPMP----VGEKEEDVLNK 321 (549)
T ss_dssp --HHHHH-------TTCEEEEEESBGGG-GGGC---CSCEEEEECCCCCHHHHHHHHHHTSCCCC------CHHHHHHHH
T ss_pred --ccccc-------CCCEEEEEcCCHHH-HHHc---CCCCeEEECCCCCHHHHHHHHHHHhcCCC----CchhHHHHHHH
Confidence 11111 45567777775432 1111 11234688999999999999987632211 1011 12456
Q ss_pred HHHHcCCCCH
Q 007661 430 LAARTKNYSG 439 (594)
Q Consensus 430 la~~t~g~sg 439 (594)
+++.+.|..-
T Consensus 322 I~~~c~GlPL 331 (549)
T 2a5y_B 322 TIELSSGNPA 331 (549)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHhCCChH
Confidence 7777777654
No 274
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.92 E-value=0.00083 Score=73.96 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l 278 (594)
..+++.||||||||+++++++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999876
No 275
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.91 E-value=0.00063 Score=63.26 Aligned_cols=32 Identities=25% Similarity=0.138 Sum_probs=29.1
Q ss_pred EEeecCCCCchHHHHHHHHhhc---CCCEEEEecc
Q 007661 537 CLLEGPSGSGKTALAATAGIDS---DFPFVKIISA 568 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~ 568 (594)
|.|.|+||||||++|+.||... |++++..+-|
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~ 37 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREP 37 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7899999999999999999987 9999998754
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.90 E-value=0.00063 Score=63.93 Aligned_cols=35 Identities=17% Similarity=0.015 Sum_probs=30.5
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc-CCCEEEEecc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS-DFPFVKIISA 568 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~-~~~fi~v~~~ 568 (594)
+.-|.|.||||||||++++.||... |++++.+.-|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~ 39 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFP 39 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 4568999999999999999999998 6889887654
No 277
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.90 E-value=0.00075 Score=66.51 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=29.9
Q ss_pred ceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEecc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISA 568 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~~ 568 (594)
+.-|+|.|+||||||++|+.||.. .|++++.+++-
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 456899999999999999999987 89998866543
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.89 E-value=0.0012 Score=60.18 Aligned_cols=37 Identities=27% Similarity=0.570 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
+..|.|.|||||||||+++.++..+. +.++++..+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEeccHHHH
Confidence 35699999999999999999999874 34566555443
No 279
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.88 E-value=0.00046 Score=66.30 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=28.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
-|+|.||||||||++|+.||...+++++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999999999998
No 280
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.87 E-value=0.00056 Score=64.45 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=28.0
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
.++.-+.|.||||||||++++.||...|..+ +++-+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~ 62 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADA 62 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Ecccc
Confidence 3455689999999999999999999886554 44443
No 281
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.86 E-value=0.0012 Score=63.26 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=33.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
++.++-|+|.||||+||+|.|+.+++.++ +..++..+++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~ 66 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRA 66 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHH
Confidence 45667899999999999999999999984 556777666653
No 282
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.85 E-value=0.00062 Score=63.30 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.+.+.-|+|.|+||+||||+++.+++.++
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45667899999999999999999999884
No 283
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0096 Score=55.58 Aligned_cols=132 Identities=14% Similarity=0.193 Sum_probs=84.9
Q ss_pred cccccEEEeChhhhcccCCCC-CCceEEEEeC----CcEEEEEeeCCCCCCCceeeCHhhhhccCccCCCeEEEEEeCCC
Q 007661 25 LALTNLAYCSPADLLNFRVPN-SNLFLASVAG----DSFVLSLASHPSVNKGQIALNSVQRRHAKVSTGDHVSLNRFIPP 99 (594)
Q Consensus 25 ~~~tn~a~vsp~~~~~l~~~g-~~~~~v~v~g----~~~v~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~v~v~~~~~~ 99 (594)
.-++++|.+.|..+.+|--.+ ...-+..+.+ +.+.+-+.. -.-+.|.|+|..-.++++++..||.|.|+....|
T Consensus 42 ~~~GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlE-F~A~EG~v~lP~wmm~~L~l~~gd~V~i~~~~LP 120 (208)
T 1zc1_A 42 ANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLE-FIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVP 120 (208)
T ss_dssp HHHSSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEE-ECCSSCEEEECHHHHHHHTCCTTCEEEEEEEECC
T ss_pred cCCCCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEE-EEcCCCeEEcCHHHHHhcCCCCCCEEEEEEeEcC
Confidence 557899999999988653311 0122333332 223333333 2346899999999999999999999999988766
Q ss_pred CcceeEeEEEEeeeeecCCccccccHHHHHHHHHHHhccCcccCCcEEEEEEcCeeEEEEEEEeee
Q 007661 100 EDFNLALLTVELEFVKKGSKNEQVDAVLLANQLRKRFINQVMTAGQRVVFEYHGNNYIFTVNGAAV 165 (594)
Q Consensus 100 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~ 165 (594)
....++.-..+.+|.. ..--...|+..++ +| ..++.|+.|.+.++++.|.|.|.+++|
T Consensus 121 kgt~vklqP~~~~Fld-----i~npKavLE~~LR-nf--stLT~Gd~I~i~~~~~~y~l~V~e~kP 178 (208)
T 1zc1_A 121 LGQFVKLEPQSVDFLD-----ISDPKAVLENVLR-NF--STLTVDDVIEISYNGKTFKIKILEVKP 178 (208)
T ss_dssp CCSEEEEECCHHHHHT-----SSCHHHHHHHHHH-HC--SCEESSSEEEEEETTEEEEEEEEEEEC
T ss_pred CCCEEEEeECcccccc-----ccCHHHHHHHHhh-cC--ccccCCCEEEEEeCCEEEEEEEEEEcC
Confidence 4333221111111210 0001123455554 33 468999999999999999999999998
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.84 E-value=0.00074 Score=62.75 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=30.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
++++.-+.|.||||+||||+++.++... ....+.+++.++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccch
Confidence 4566779999999999999999999874 334455665544
No 285
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.0034 Score=60.65 Aligned_cols=38 Identities=34% Similarity=0.309 Sum_probs=28.0
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh---CCCCcEEEe
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML---NGMEPKIVN 287 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l---~~~~~~~v~ 287 (594)
|+++..-++++|+||+|||++|..++... .+..+.+++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 56777779999999999999999876432 234455544
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.82 E-value=0.00057 Score=68.75 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=32.9
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
-+++.||+|||||+||..||...+..+|+.++-.+|
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvY 40 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVY 40 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGB
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceeecCcccce
Confidence 478999999999999999999999999998888776
No 287
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.82 E-value=0.00078 Score=62.84 Aligned_cols=33 Identities=18% Similarity=0.098 Sum_probs=28.5
Q ss_pred EEeecCCCCchHHHHHHHHhhc---CCCEEEEeccc
Q 007661 537 CLLEGPSGSGKTALAATAGIDS---DFPFVKIISAE 569 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e 569 (594)
|.|.|||||||||+|+.|+... |++++...-|.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~ 38 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCC
Confidence 7899999999999999999988 99999876554
No 288
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.82 E-value=0.00056 Score=65.52 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=27.0
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
.-|.|.|||||||||+|+.||...|++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458999999999999999999999988765
No 289
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.81 E-value=0.00065 Score=66.25 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=27.9
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
++.-+.|.|||||||||+++.||...|+..+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 35679999999999999999999998887654
No 290
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.81 E-value=0.0053 Score=64.86 Aligned_cols=210 Identities=11% Similarity=0.119 Sum_probs=99.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhhh-------------------ccc-chhHHHHHHHHHHH
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVLS-------------------KFV-GETEKNIRDLFADA 310 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~~-------------------~~~-g~~~~~i~~lf~~a 310 (594)
+|.-|++.|++|+||||++..+|..+. +..+..+.+..+.. ... .+....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998773 34455555432110 011 12233445566666
Q ss_pred HhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcccccH--HhhCCC
Q 007661 311 ENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDE--ALLRPG 388 (594)
Q Consensus 311 ~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~~ld~--al~r~g 388 (594)
.... .++++||..-.+. ....+...+.....-.....-++|+-++...+.++. .+....
T Consensus 179 ~~~~--------~DvVIIDTaGrl~-----------~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~ 239 (443)
T 3dm5_A 179 KSKG--------VDIIIVDTAGRHK-----------EDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEAT 239 (443)
T ss_dssp HHTT--------CSEEEEECCCCSS-----------CCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSC
T ss_pred HhCC--------CCEEEEECCCccc-----------chHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhC
Confidence 5532 3499999774331 112233333222221122223455545443333222 222111
Q ss_pred CccceeecCCCCHHHHHHHHHHHHhc--ccc----CCC-C--CCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccC
Q 007661 389 RLEVQVEISLPDENGRLQILQIHTNK--MKE----NSF-L--APDVNLQELAARTKNYSGAELEGVAKSAVSFALNRQLS 459 (594)
Q Consensus 389 Rf~~~i~i~~P~~~~r~~IL~~~~~~--~~~----~~~-l--~~~~~l~~la~~t~g~sg~dl~~l~~~A~~~a~~r~~~ 459 (594)
.+. -+-+.-.|...+...+...... .+. .+. + ....+.+.++.+.-|+ .|+..|++.|....-.....
T Consensus 240 ~i~-gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg~--gd~~~l~e~~~~~~~~~~~~ 316 (443)
T 3dm5_A 240 PIG-SIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGL--GDIQGLLEKFKELEKEVEIK 316 (443)
T ss_dssp TTE-EEEEECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTTT--TCHHHHHHHHHHHHTTHHHH
T ss_pred CCe-EEEEECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcCC--CcHHHHHHHHHHhhhhhHHH
Confidence 221 1233333433332222211111 110 000 1 1223567888877664 48888888776432111000
Q ss_pred cccCCCCcccchhhcchhHHHHHHHhcc
Q 007661 460 MDDLTKPVDEESIKVTMDDFLHALYEIV 487 (594)
Q Consensus 460 ~~~~~~~~~~~~~~vt~~df~~al~~~~ 487 (594)
. .+.+ .......+.+||.+.++.+.
T Consensus 317 ~-~~~~--k~~~~~f~l~d~~~q~~~~~ 341 (443)
T 3dm5_A 317 E-EDIE--RFLRGKFTLKDMYAQLEAMR 341 (443)
T ss_dssp H-HHHH--HHHTTCCCHHHHHHHHHHHH
T ss_pred H-HHHH--HHhhCCcCHHHHHHHHHHHH
Confidence 0 0000 01223588999999888764
No 291
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.80 E-value=0.00026 Score=78.37 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=26.6
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
.++||+||||||||+||+++|..++..++.
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 379999999999999999999999866554
No 292
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.78 E-value=0.0027 Score=67.83 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=30.9
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~ 288 (594)
|+.+..-++|.|+||+|||+++..++..+. +..+.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 678888899999999999999999987652 345555543
No 293
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.78 E-value=0.00068 Score=65.61 Aligned_cols=31 Identities=16% Similarity=0.418 Sum_probs=27.5
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
+.-+.+.||||||||++|+.||...|++++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568999999999999999999999987754
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.00058 Score=64.03 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=28.2
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
-|.|.|+|||||||+|+.||...+..|+.-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~ 32 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEP 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEccc
Confidence 3789999999999999999999999888764
No 295
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.77 E-value=0.0004 Score=64.52 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=25.8
Q ss_pred EEEeecCCCCchHHHHHHHHhhcC---CCEEEEec
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSD---FPFVKIIS 567 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~---~~fi~v~~ 567 (594)
-|+|.||||||||++|+.||...+ +++..+.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 489999999999999999998655 44555553
No 296
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.76 E-value=0.0012 Score=62.22 Aligned_cols=39 Identities=21% Similarity=0.101 Sum_probs=30.5
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEecccc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISAES 570 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~e~ 570 (594)
.++.-+.|.||+|||||++|++||... |...+.+++-.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 455678999999999999999999876 655456666444
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.76 E-value=0.0011 Score=62.12 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=28.3
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
+.-|.|.|++|||||++|+.||.. |++|+..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 456899999999999999999998 88888654
No 298
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.0012 Score=62.34 Aligned_cols=35 Identities=23% Similarity=0.076 Sum_probs=28.6
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCC--CEEEEecc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDF--PFVKIISA 568 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~--~fi~v~~~ 568 (594)
+.-|+|.||||||||++|+.||...+. +++...-|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 40 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWN 40 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCC
Confidence 456899999999999999999998776 47665544
No 299
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.74 E-value=0.0014 Score=64.66 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+++..-++|.||+|+||||++++++..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 3455668999999999999999999876
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.00078 Score=69.57 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
..+++.||+|+||||++++++..++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 4589999999999999999998773
No 301
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.73 E-value=0.0032 Score=60.46 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=42.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEecch-------hhhcccchh-----HHHHHHHHHHHHhhccccCCCC
Q 007661 256 GMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNGPE-------VLSKFVGET-----EKNIRDLFADAENDQRTRGDQS 321 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~~~-------l~~~~~g~~-----~~~i~~lf~~a~~~~~~~~~~~ 321 (594)
-++++||+|+||||++..++..+ .+..+.+++... +.+. .|-. .....++++.+..... ..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~----~~ 88 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSF----ND 88 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTS----CT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhh----CC
Confidence 46788999999999999888776 334455553221 1111 1210 0112345555554211 12
Q ss_pred CcEEEEEccchhh
Q 007661 322 DLHVIIFDEIDAI 334 (594)
Q Consensus 322 ~~~Il~iDEid~l 334 (594)
.+++|+|||+..+
T Consensus 89 ~~dvViIDEaQ~l 101 (223)
T 2b8t_A 89 ETKVIGIDEVQFF 101 (223)
T ss_dssp TCCEEEECSGGGS
T ss_pred CCCEEEEecCccC
Confidence 3569999999875
No 302
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.72 E-value=0.0013 Score=60.93 Aligned_cols=38 Identities=34% Similarity=0.469 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
..+..|+|+|+|||||||+++.+++.+.+ +.+++..++
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g--~~~id~d~~ 45 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDG--FQHLEVGKL 45 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTT--EEEEEHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCC--CEEeeHHHH
Confidence 34567999999999999999999998312 345555444
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.72 E-value=0.0013 Score=60.68 Aligned_cols=28 Identities=29% Similarity=0.558 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
..++.|+|+|+||+||||+++.+++.++
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999999884
No 304
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.72 E-value=0.0018 Score=64.00 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+..-+.|.||+|+||||+++.++..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445568899999999999999999765
No 305
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.71 E-value=0.00098 Score=62.89 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=26.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
-+.|.||+||||||+++.||. .|++|+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 478999999999999999998 89999874
No 306
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.71 E-value=0.00085 Score=63.17 Aligned_cols=30 Identities=20% Similarity=0.097 Sum_probs=27.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
-|.+.||+|||||++++.||. .|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 478999999999999999999 899998854
No 307
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.70 E-value=0.00074 Score=63.29 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.7
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
..+++|.||||+|||+||..||...+ .+|+-++..+|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~ 70 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVY 70 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhee
Confidence 36799999999999999999999877 88888877776
No 308
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.70 E-value=0.0012 Score=68.56 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
++..-+.|.||+||||||++|.|+...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 444568899999999999999999776
No 309
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.70 E-value=0.00046 Score=65.29 Aligned_cols=33 Identities=18% Similarity=0.024 Sum_probs=26.7
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.+.-|.|.|+||||||++|+.||...+.+++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 455699999999999999999998766554443
No 310
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.67 E-value=0.0018 Score=67.74 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=30.6
Q ss_pred cceEEEe--ecCCCCchHHHHHHHHhhc---------CCCEEEEeccc
Q 007661 533 PLVTCLL--EGPSGSGKTALAATAGIDS---------DFPFVKIISAE 569 (594)
Q Consensus 533 p~~gvLL--~GPpG~GKT~lAkalA~~~---------~~~fi~v~~~e 569 (594)
.+..+++ +||||||||+||++++.+. ++.++.+.+.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 4567899 9999999999999999765 66788888643
No 311
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.67 E-value=0.0038 Score=61.34 Aligned_cols=39 Identities=21% Similarity=0.497 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchhh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEVL 292 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l~ 292 (594)
+.-|+|.|+||+||||+++.+++.+. +..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 45699999999999999999999852 3444434655544
No 312
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.65 E-value=0.0014 Score=60.04 Aligned_cols=34 Identities=24% Similarity=0.445 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
.|+|.|||||||||+++.+++.++ +.+++..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~ 39 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLI 39 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHH
Confidence 589999999999999999999984 3455655544
No 313
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.64 E-value=0.0024 Score=59.11 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.++-|+|.|+|||||||+++.+++.++ ...++..++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~ 42 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLR 42 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHH
Confidence 345799999999999999999999874 34556555443
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.63 E-value=0.0014 Score=59.70 Aligned_cols=38 Identities=29% Similarity=0.622 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
+..+|+|.|+|||||||+++.+++.+. .+ +++..++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg-~~--~id~D~~~~ 43 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK-LE--VLDTDMIIS 43 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT-CC--EEEHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC-CC--EEEChHHHH
Confidence 446899999999999999999999984 33 355554443
No 315
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.62 E-value=0.017 Score=53.93 Aligned_cols=107 Identities=12% Similarity=0.165 Sum_probs=61.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEE---ecc------hhhhccc-----------------chhHHHHHHH
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKML--NGMEPKIV---NGP------EVLSKFV-----------------GETEKNIRDL 306 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v---~~~------~l~~~~~-----------------g~~~~~i~~l 306 (594)
..|++|+++|.||||+|-.+|-.. .+..+.++ .+. .++.... .+.....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 369999999999999999888665 34455554 321 2333220 0113445666
Q ss_pred HHHHHhhccccCCCCCcEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCc
Q 007661 307 FADAENDQRTRGDQSDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRK 377 (594)
Q Consensus 307 f~~a~~~~~~~~~~~~~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~ 377 (594)
++.+.+... +...++|++||+....+-+.- ..+.++ ..+.. ...+.-||.|+|.+
T Consensus 109 l~~a~~~l~----~~~yDlvILDEi~~al~~g~l------~~~ev~----~~l~~--Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLA----DPLLDMVVLDELTYMVAYDYL------PLEEVI----SALNA--RPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTT----CTTCSEEEEETHHHHHHTTSS------CHHHHH----HHHHT--SCTTCEEEEECSSC
T ss_pred HHHHHHHHh----cCCCCEEEEeCCCccccCCCC------CHHHHH----HHHHh--CcCCCEEEEECCCC
Confidence 666666531 223569999999875432211 122333 33331 23467788888775
No 316
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.62 E-value=0.00088 Score=65.62 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=28.5
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
...|.|.||+|||||++++.||...|++|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 34599999999999999999999999988764
No 317
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.60 E-value=0.0064 Score=61.31 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=29.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEec
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNG 288 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~ 288 (594)
..+++-+++.||+|+||||++..+|..+. +..+..+.+
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 45677799999999999999999998773 334444443
No 318
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.59 E-value=0.0043 Score=60.14 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=26.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
.++++||+|+|||.++.+++..+....++.+...++.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 5899999999999999999888743333333333443
No 319
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.59 E-value=0.0024 Score=61.58 Aligned_cols=38 Identities=26% Similarity=0.376 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.+..|+|.|+|||||||+++.+++.+. +.+++..+++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~ 52 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLR 52 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHH
Confidence 345799999999999999999999984 34566555543
No 320
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.59 E-value=0.0028 Score=58.93 Aligned_cols=38 Identities=18% Similarity=0.316 Sum_probs=29.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.+.-|+|.|+|||||||+++.+++.++ ..+++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~ 45 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLR 45 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHH
Confidence 456799999999999999999999884 34555555444
No 321
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.59 E-value=0.0029 Score=67.69 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.+++.|+||||||+++.+++..+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999998873
No 322
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.58 E-value=0.067 Score=51.10 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEec
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNG 288 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~ 288 (594)
..|++.|+||+||||++-.+|..+ .+..+.++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999988776 3445544443
No 323
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.58 E-value=0.0016 Score=60.34 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.-|+|.|+||+||||+++.+++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.58 E-value=0.0029 Score=59.35 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
..+..|+|.|+||+||||+++.+++.+. .. +++..+++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~--~i~~d~~~r 56 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG-IP--QISTGELFR 56 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT-CC--EEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-Cc--EEehhHHHH
Confidence 3455699999999999999999999884 32 455544443
No 325
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.56 E-value=0.0013 Score=61.81 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=28.3
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
-|.+.||+|||||++|+.||...|++|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999999998743
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.56 E-value=0.0017 Score=61.97 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
++..|+|.|+||+||||+++.+++.+. ..+++..+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~ 40 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLR 40 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHH
Confidence 456799999999999999999999984 34566555544
No 327
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.55 E-value=0.0026 Score=59.30 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
+.-|+|.|+||+||||+++.+++.++ +.+++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHH
Confidence 45799999999999999999999884 44566655543
No 328
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.54 E-value=0.0072 Score=63.81 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=27.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEec
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNG 288 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~ 288 (594)
++.-+++.||+|+||||++..+|..+. +..+..+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 467789999999999999999997773 444555543
No 329
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.54 E-value=0.0016 Score=67.75 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=28.0
Q ss_pred hhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 245 VTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 245 ~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.+..+.+++...+++.||+|+||||++++++..++
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 33444456667799999999999999999998763
No 330
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.52 E-value=0.0016 Score=62.53 Aligned_cols=39 Identities=21% Similarity=0.426 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
..+..|+|.|+|||||||+++.+++.++ ...++..+++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~ 43 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLR 43 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHH
Confidence 3456799999999999999999999874 34555555443
No 331
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.52 E-value=0.0022 Score=66.02 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+..-+.|.||+||||||++|.|+...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 444558899999999999999999865
No 332
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.0011 Score=67.96 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=20.2
Q ss_pred EEeecCCCCchHHHHHHHHhh
Q 007661 537 CLLEGPSGSGKTALAATAGID 557 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~ 557 (594)
+||+||||||||++|+++|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999985
No 333
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.51 E-value=0.0013 Score=68.44 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=32.9
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
+.-|.+.||+|+|||+||..||...+..+|+.++-.+|
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvY 39 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVY 39 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTB
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCcccee
Confidence 44578999999999999999999999889988776555
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.50 E-value=0.00067 Score=64.25 Aligned_cols=34 Identities=15% Similarity=0.019 Sum_probs=26.7
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEe
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKII 566 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~ 566 (594)
++.-|.|.|+||||||++|+.||... +++...+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 45669999999999999999999865 45554443
No 335
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.50 E-value=0.0025 Score=65.68 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=23.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
++..-+.|.||+|+|||||+|+++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 445568899999999999999999765
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.49 E-value=0.0029 Score=61.54 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
++|..|+|.||||+||||+++.+++.++ +..++..+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~ 66 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLRE 66 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHH
Confidence 3567899999999999999999999873 445666555543
No 337
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.47 E-value=0.0018 Score=61.38 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.|+|.||||+||+|.|+.+++.++ +..++..+++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHH
Confidence 378999999999999999999984 55677766654
No 338
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.47 E-value=0.0026 Score=59.78 Aligned_cols=36 Identities=17% Similarity=0.335 Sum_probs=29.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
++.-+.|.||+|+||||+++.++..+. ...+++.++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g---~~~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG---LEFAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC---CEEEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC---CeEEccccc
Confidence 456799999999999999999999872 345666554
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.47 E-value=0.002 Score=59.78 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
|.-|+|.|+|||||||+++.+++.++ ..+++..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~ 38 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELL 38 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHH
Confidence 45699999999999999999999874 3446655554
No 340
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.47 E-value=0.0062 Score=64.83 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~ 288 (594)
|+.+..-++|.|+||+|||+++..+|.... +.++.+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 677877899999999999999999987652 345555544
No 341
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.46 E-value=0.0034 Score=59.00 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=24.6
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 249 LGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 249 ~g~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+....++-+.|.||+|+|||||++.++....
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3344566799999999999999999998763
No 342
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.0027 Score=65.59 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
++..-+.|.||+||||||++|.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 444568899999999999999999775
No 343
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.44 E-value=0.0026 Score=65.62 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
++..-+.|.||+||||||+.|.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 444568899999999999999999775
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.44 E-value=0.0015 Score=61.26 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=27.8
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.-|.|.|++|||||++|+.+|...|+++|..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 4478999999999999999999889988874
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.44 E-value=0.0017 Score=60.05 Aligned_cols=35 Identities=26% Similarity=0.565 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.|+|.|+|||||||+++.+++.++ .. +++..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg-~~--~id~D~~~~ 38 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG-VG--LLDTDVAIE 38 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT-CC--EEEHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC-CC--EEeCchHHH
Confidence 589999999999999999999884 33 455555543
No 346
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.44 E-value=0.0016 Score=59.21 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
-|+|.||||+||||+++.+++.+. . .+++...+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~-~--~~i~~d~~~~ 37 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK-Y--PIIKGSSFEL 37 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC-C--CEEECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-C--eeecCccccc
Confidence 589999999999999999999984 2 3455554443
No 347
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.43 E-value=0.0058 Score=57.87 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEecchh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNGPEV 291 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~~~l 291 (594)
.++.-|+|.|+||+||||+++.++..+. +.....+++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4556799999999999999999998874 334566665444
No 348
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.42 E-value=0.0021 Score=61.18 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=27.2
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.-|.|.|++|||||++++.||. .|++++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 45689999999999999999998 78887765
No 349
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.42 E-value=0.0016 Score=59.67 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=24.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH-hhCCCCcEEEec
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGK-MLNGMEPKIVNG 288 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~-~l~~~~~~~v~~ 288 (594)
|.-|+|.|+||+||||+++.+++ .+ ....++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~---~~~~i~~ 34 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP---GFYNINR 34 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST---TEEEECH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC---CcEEecH
Confidence 34689999999999999999998 33 2445554
No 350
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.42 E-value=0.0031 Score=57.66 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+..++|.||||+||||+++.++..+. ..++++.++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g---~~~i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC---cEEEeCccc
Confidence 45689999999999999999999873 345666554
No 351
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.41 E-value=0.0025 Score=59.91 Aligned_cols=35 Identities=17% Similarity=0.393 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
++-|+|.|+||+||||+++.+++.+. ...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcC
Confidence 45799999999999999999999884 334555554
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.41 E-value=0.002 Score=60.75 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=28.4
Q ss_pred CCcceEEEeecCCCCchHHHHHHHHhhc-CCCEEEE
Q 007661 531 GSPLVTCLLEGPSGSGKTALAATAGIDS-DFPFVKI 565 (594)
Q Consensus 531 ~~p~~gvLL~GPpG~GKT~lAkalA~~~-~~~fi~v 565 (594)
..+..-+.+.||||||||++|+.|+... ++.++..
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 3445668999999999999999999987 6666554
No 353
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.41 E-value=0.0024 Score=65.79 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
++..-+.|.||+||||||++|.|+...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999999775
No 354
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.41 E-value=0.0024 Score=60.87 Aligned_cols=36 Identities=25% Similarity=0.417 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
..|+|.|+|||||||+++.+++.++ +.+++..+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~ 41 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDMLR 41 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHHH
Confidence 4699999999999999999999984 34556555544
No 355
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.41 E-value=0.0018 Score=63.37 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=27.8
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
+..-|.|.||+|||||++++.||...|+.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34568999999999999999999999987764
No 356
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.40 E-value=0.0021 Score=59.37 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
+..|+|.|+|||||||+++.+++.+. ...++..++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~ 40 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILR 40 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHH
Confidence 34689999999999999999999874 34555544443
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.40 E-value=0.0016 Score=66.42 Aligned_cols=37 Identities=22% Similarity=0.235 Sum_probs=32.4
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccccc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAESM 571 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e~~ 571 (594)
.-|.+.||+|||||+||+.||...+..+|+.++=.+|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvY 44 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVY 44 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTB
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccccccc
Confidence 4589999999999999999999999888888776555
No 358
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0032 Score=58.29 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=28.9
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEecc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISA 568 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~ 568 (594)
.++.-++|.|+||||||++++.||... +.+++.+++-
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 455668999999999999999999764 5556666543
No 359
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.37 E-value=0.041 Score=58.64 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhh
Q 007661 534 LVTCLLEGPSGSGKTALAATAGID 557 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~ 557 (594)
...+.+.|.||+|||+|..++..+
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cceeEEecCCCCCHHHHHHHHhCC
Confidence 456899999999999999999854
No 360
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.34 E-value=0.0034 Score=62.28 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
++..-+.|.||+|+||||+++.++..+
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 444568899999999999999999765
No 361
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.34 E-value=0.007 Score=65.92 Aligned_cols=29 Identities=24% Similarity=0.154 Sum_probs=24.4
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhh
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGID 557 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~ 557 (594)
.+..+..-+++.||||||||+|++.+|..
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35566677899999999999999999854
No 362
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.34 E-value=0.0029 Score=59.98 Aligned_cols=40 Identities=30% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCCcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 530 KGSPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 530 ~~~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
+..+..-++++||||||||+|++.+|...+.+.+.+...+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566667899999999999999999986666666666544
No 363
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.32 E-value=0.012 Score=59.55 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEe
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVN 287 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~ 287 (594)
|+.+..-++|.|+||+|||+++..+|... ++.++.+++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67777789999999999999999998664 233455554
No 364
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.32 E-value=0.013 Score=54.61 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHhh-CCCCcEEEe
Q 007661 254 VKGMLLYGPPGTGKT-LMARQIGKML-NGMEPKIVN 287 (594)
Q Consensus 254 ~~giLL~GppGtGKT-~lar~ia~~l-~~~~~~~v~ 287 (594)
.+=.++|||.|+||| .|.+++.+.. .+..+.++.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 344788999999999 8888888765 334555554
No 365
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.31 E-value=0.0049 Score=56.01 Aligned_cols=36 Identities=19% Similarity=0.425 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
+.|+|.|+|||||||+++.+++.+. ..+++..++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~~ 38 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFMQ 38 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHHH
Confidence 3589999999999999999999884 33455555443
No 366
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.30 E-value=0.0032 Score=59.63 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=30.0
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhh----cCCCEEEEecc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGID----SDFPFVKIISA 568 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~----~~~~fi~v~~~ 568 (594)
.++.-++|.|+||||||++|+.||.. .|.+++.+++-
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 34566899999999999999999975 45778888753
No 367
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.28 E-value=0.0023 Score=61.83 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=28.7
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
.+..-|.|.|++|||||++++.||...|++++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 344568999999999999999999999988876
No 368
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.28 E-value=0.0027 Score=57.54 Aligned_cols=33 Identities=30% Similarity=0.527 Sum_probs=24.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
-|+|.||||+||||+++.+ +.++ +.+++..+++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~ 35 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVV 35 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHH
Confidence 5889999999999999999 6653 3345544443
No 369
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.27 E-value=0.0023 Score=61.08 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=29.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.+..|+|.||||+||||+++.+++.++ ...++..+++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~ 41 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLR 41 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHH
Confidence 456799999999999999999999985 34555555443
No 370
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.26 E-value=0.0022 Score=60.96 Aligned_cols=31 Identities=23% Similarity=0.524 Sum_probs=28.2
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.-+.|.|+||||||++|+.||...|++|+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4589999999999999999999999998874
No 371
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.26 E-value=0.0026 Score=60.05 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=27.4
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
-|.+.||+|||||++|+.||...|++|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999984
No 372
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.26 E-value=0.0032 Score=59.04 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.++-|+|.|+|||||||+++.+++.++ ..+++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~~ 51 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLR 51 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHHH
Confidence 455799999999999999999999874 34555555443
No 373
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.26 E-value=0.0019 Score=64.77 Aligned_cols=32 Identities=25% Similarity=0.154 Sum_probs=26.2
Q ss_pred eEEEeecCCCCchHHHHHHHHhhc-CCCEEEEe
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDS-DFPFVKII 566 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~-~~~fi~v~ 566 (594)
.-|+|.||||||||++|+.||... ++.++..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEeccc
Confidence 458999999999999999999864 66666543
No 374
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.25 E-value=0.028 Score=56.33 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEec
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNG 288 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~ 288 (594)
++.-++|.||+|+||||++..+|..+. +..+..+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 566799999999999999999998763 335555544
No 375
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.25 E-value=0.0037 Score=64.22 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+++..-+.|.||+||||||++|.++...
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3445568899999999999999999775
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.24 E-value=0.0025 Score=63.50 Aligned_cols=31 Identities=29% Similarity=0.296 Sum_probs=27.3
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
+.-|.|.|+||||||++|+.|| +.|+++|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 4569999999999999999999 678888775
No 377
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.23 E-value=0.02 Score=63.48 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l 278 (594)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999998887665
No 378
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.21 E-value=0.0024 Score=60.22 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.2
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
.++.-++|.||||||||++++.|+...+
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4555689999999999999999998774
No 379
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.21 E-value=0.0028 Score=59.59 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecchh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPEV 291 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~l 291 (594)
.++.-|.|.||+|+||||+++.++..+. +...+++++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3456789999999999999999999874 222235555444
No 380
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.21 E-value=0.0033 Score=58.89 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=26.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEE
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKI 285 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~ 285 (594)
.++-|.|.|++|+||||+++.+++.+.+.+++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 345799999999999999999999873333443
No 381
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.21 E-value=0.0097 Score=55.87 Aligned_cols=42 Identities=21% Similarity=0.166 Sum_probs=30.9
Q ss_pred HHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEe
Q 007661 525 QVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKII 566 (594)
Q Consensus 525 ~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~ 566 (594)
.+......++.-+.+.||+|||||++++.|+... +.+++.+.
T Consensus 13 ~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 13 TILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp HHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 3333344556678999999999999999999753 66665553
No 382
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.20 E-value=0.0024 Score=62.50 Aligned_cols=30 Identities=17% Similarity=-0.003 Sum_probs=26.5
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCE
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPF 562 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~f 562 (594)
.+.-|.+.||||||||++|+.||...|+++
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 345689999999999999999999999873
No 383
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.20 E-value=0.004 Score=57.23 Aligned_cols=37 Identities=24% Similarity=0.340 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecc
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGP 289 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~ 289 (594)
++.-|.|.|++|+||||+++.++..+. +.+++.+++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 456689999999999999999999872 4445555543
No 384
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.19 E-value=0.002 Score=59.67 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.0
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFV 563 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi 563 (594)
.+.|.||+|||||+|++.|+...+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999987766554
No 385
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.18 E-value=0.012 Score=55.36 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l 278 (594)
+++++.+|+|+|||+++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999988777543
No 386
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.17 E-value=0.0074 Score=60.38 Aligned_cols=48 Identities=13% Similarity=0.009 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
+..++..+..++.........++.-|.+.||+|||||+||+.|+...+
T Consensus 9 ~~~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 9 LDYTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 344444444444443333445667789999999999999999997664
No 387
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.16 E-value=0.0029 Score=58.69 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=24.5
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEEecc
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKIISA 568 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~ 568 (594)
-+.|.||||||||++++.||...+. .+.+++-
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d 35 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGD 35 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEccc
Confidence 3689999999999999999975543 2455543
No 388
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.16 E-value=0.0022 Score=61.75 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=27.2
Q ss_pred EEEeecCCCCchHHHHHHHHhhcCCCEEEE
Q 007661 536 TCLLEGPSGSGKTALAATAGIDSDFPFVKI 565 (594)
Q Consensus 536 gvLL~GPpG~GKT~lAkalA~~~~~~fi~v 565 (594)
.+=|.||||||||++|+.||...++++|+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 456899999999999999999999998876
No 389
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.15 E-value=0.0025 Score=59.02 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~ 279 (594)
-|+|.|+||+||||+++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999885
No 390
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.15 E-value=0.0038 Score=56.47 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.|+|.|+||+||||+++.+++.+. . .+++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-~--~~i~~d~~~~ 36 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-I--PFYDVDEEVQ 36 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-C--CEEEHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-C--CEEECcHHHH
Confidence 489999999999999999999884 3 2455555443
No 391
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.14 E-value=0.016 Score=54.14 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=18.1
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHh
Q 007661 254 VKGMLLYGPPGTGKTLMAR-QIGKM 277 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar-~ia~~ 277 (594)
.+++++.+|+|+|||+.+- .+...
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHH
Confidence 3679999999999998743 33444
No 392
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.13 E-value=0.0049 Score=56.98 Aligned_cols=39 Identities=28% Similarity=0.509 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEecch
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNGPE 290 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~~~ 290 (594)
.++.-|+|.|+||+||||+++.++..+. +..+.++++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 3456799999999999999999999874 23344555443
No 393
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.13 E-value=0.0021 Score=59.10 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=19.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.-|+|.|+||+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45699999999999999999999874
No 394
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.13 E-value=0.0043 Score=58.77 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.|+|.||||+||||+++.+++.+. . ..++..+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-~--~~i~~d~~~r 36 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE-I--PHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-C--CEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-C--cEeeHHHHHH
Confidence 488999999999999999999874 2 3455555544
No 395
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.12 E-value=0.0033 Score=59.27 Aligned_cols=29 Identities=17% Similarity=0.486 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
..+++-|+|.||||+||||+++.++..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34567799999999999999999999874
No 396
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.12 E-value=0.003 Score=59.97 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.|+|.||||+||||+++.+++.+. +..++..+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHH
Confidence 488999999999999999999873 23455545443
No 397
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.12 E-value=0.0049 Score=63.42 Aligned_cols=42 Identities=21% Similarity=0.000 Sum_probs=33.5
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEecccc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAES 570 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~~e~ 570 (594)
.+..+..-++++||||||||+||..+|.. .+.+.+.|++.+.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 35566667899999999999999999965 4677888877664
No 398
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.12 E-value=0.003 Score=59.23 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+.++.-+.|.||+|+||||+++.++..+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456678999999999999999999876
No 399
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.11 E-value=0.0037 Score=60.77 Aligned_cols=26 Identities=27% Similarity=0.657 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.-+.|.||+|+||||+++.+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999998874
No 400
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0047 Score=60.41 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
...|.|.|++|+||||+++.++..+. +.+++...+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~d~~~~~ 85 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDCDTLIEQ 85 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeCcHHHHH
Confidence 46799999999999999999999884 345565555443
No 401
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.10 E-value=0.0072 Score=63.01 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
+++..-+.|.||+||||||++|.|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4555678999999999999999999754
No 402
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.09 E-value=0.0034 Score=59.10 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCC
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNG 280 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~ 280 (594)
+.-|+|.|+||+||||+++.+++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 356899999999999999999998854
No 403
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.08 E-value=0.0037 Score=61.25 Aligned_cols=24 Identities=46% Similarity=0.571 Sum_probs=22.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~ 279 (594)
-++|.|||||||||+|+.+|+.++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 478999999999999999999985
No 404
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.07 E-value=0.0036 Score=57.77 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.+-+.|.||+|+||||+++.++..+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345689999999999999999998763
No 405
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.06 E-value=0.0044 Score=59.69 Aligned_cols=41 Identities=15% Similarity=0.028 Sum_probs=31.1
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhc---------CCCEEEEeccc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIISAE 569 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---------~~~fi~v~~~e 569 (594)
.+..+..-++|+||||||||+|++.+|... +...+.+.+.+
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 345566678999999999999999999842 44566666554
No 406
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.06 E-value=0.0026 Score=65.94 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
++..-+.|.||+||||||++|.++...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 444568899999999999999999765
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.06 E-value=0.0025 Score=70.77 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=23.5
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCC
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDF 560 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~ 560 (594)
..+||+||||||||+||+++|..+..
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 47999999999999999999988753
No 408
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.05 E-value=0.0027 Score=67.09 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=29.2
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcCCCEEEEe
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSDFPFVKII 566 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~ 566 (594)
..+.-|+|.||||||||++|+.||...++.+|..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D 290 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRD 290 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccc
Confidence 34556899999999999999999999887776543
No 409
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.01 E-value=0.0029 Score=59.92 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=27.9
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcC-----CCEEEEec
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSD-----FPFVKIIS 567 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~-----~~fi~v~~ 567 (594)
.+..-+.+.||+|||||||++.|+.... ...|.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 4556688999999999999999997664 44555544
No 410
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.99 E-value=0.0042 Score=58.50 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.+.-|+|.|+|||||||+++.+++.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999874
No 411
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.97 E-value=0.0037 Score=58.62 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.8
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
++.-+.|.||+|||||++++.|+...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 44568999999999999999999876
No 412
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.97 E-value=0.0042 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcC
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
.-+.|.||+|||||+|++.|+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999997653
No 413
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.95 E-value=0.0067 Score=56.86 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
.|.|.|++||||||+++.+++ ++ +.+++..++...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHHHHH
Confidence 588999999999999999999 63 445666665543
No 414
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.94 E-value=0.0048 Score=62.82 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=30.5
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEeccc
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIISAE 569 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~~e 569 (594)
..++++||+|+|||+|++.++.+.+.+++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 37999999999999999999998877888887653
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.93 E-value=0.0075 Score=56.42 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhccc
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSKFV 296 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~~~ 296 (594)
..-|.|.|++||||||+++.+++.+. +.++++.++.....
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~ 51 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVL 51 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHH
Confidence 34588999999999999999999863 44577666654433
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.90 E-value=0.0045 Score=58.44 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.+.-|+|.|+|||||||+++.+++.++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999874
No 417
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.90 E-value=0.0077 Score=57.34 Aligned_cols=30 Identities=30% Similarity=0.205 Sum_probs=25.0
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
.+..+..-+.|.||+|||||+|++.+|...
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 355666678999999999999999999743
No 418
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.88 E-value=0.032 Score=52.86 Aligned_cols=24 Identities=25% Similarity=0.098 Sum_probs=18.1
Q ss_pred CceEEEEcCCCCcHHHHH-HHHHHh
Q 007661 254 VKGMLLYGPPGTGKTLMA-RQIGKM 277 (594)
Q Consensus 254 ~~giLL~GppGtGKT~la-r~ia~~ 277 (594)
.+++++.+|+|+|||..+ -.+...
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHH
Confidence 467999999999999873 334443
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.84 E-value=0.011 Score=62.20 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
..+.-|+|+|+||+||||+++.+++.+. ...++..++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEccchH
Confidence 4556799999999999999999998873 455665554
No 420
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.84 E-value=0.0041 Score=58.69 Aligned_cols=33 Identities=21% Similarity=0.227 Sum_probs=26.5
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhcC--CCEEE
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDSD--FPFVK 564 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~~--~~fi~ 564 (594)
.++.-+.|.||+|||||||++.|+...+ +.++.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 3455688999999999999999999876 55544
No 421
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.83 E-value=0.0053 Score=57.31 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
.+..|.|.|++||||||+++.+++. + +.+++..++..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~--g--~~~id~d~~~~ 43 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW--G--YPVLDLDALAA 43 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT--T--CCEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC--C--CEEEcccHHHH
Confidence 3456899999999999999999987 3 33566665544
No 422
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.82 E-value=0.051 Score=55.23 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.++.-+.|.||+|+||||+++.++..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 566779999999999999999999876
No 423
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.81 E-value=0.0052 Score=58.12 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.2
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
++.-+.|.||+|+|||+|++.|+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 344588999999999999999998764
No 424
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.81 E-value=0.0058 Score=57.19 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=25.3
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
+..-+.|.||+|||||||++.|+... +-+.+.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~--~~~~~~~ 38 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL--AEIKISI 38 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS--SSEEECC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC--CCeEEec
Confidence 33457899999999999999999875 3444444
No 425
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.79 E-value=0.004 Score=63.58 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=45.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCC-CCcEEEecchhhh-----c---ccchhHHHHHHHHHHHHhhccccCCCCC
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNG-MEPKIVNGPEVLS-----K---FVGETEKNIRDLFADAENDQRTRGDQSD 322 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~-~~~~~v~~~~l~~-----~---~~g~~~~~i~~lf~~a~~~~~~~~~~~~ 322 (594)
++...+++.||+|+||||++++++..+.. ...+.+++..... . ++.......+..+..|....
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~-------- 240 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR-------- 240 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSC--------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhC--------
Confidence 34567999999999999999999988742 2334454432211 1 12001123444555555443
Q ss_pred cEEEEEccchh
Q 007661 323 LHVIIFDEIDA 333 (594)
Q Consensus 323 ~~Il~iDEid~ 333 (594)
|.+|++||+-.
T Consensus 241 p~ilildE~~~ 251 (330)
T 2pt7_A 241 PDRIILGELRS 251 (330)
T ss_dssp CSEEEECCCCS
T ss_pred CCEEEEcCCCh
Confidence 56999999764
No 426
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.78 E-value=0.005 Score=58.44 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
.|+|.|+||+||||+++.+++.++ . .+++..+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g-~--~~i~~d~~~ 35 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG-I--PQISTGDML 35 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC-C--CEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-C--eEEeHHHHH
Confidence 489999999999999999999884 3 345554443
No 427
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.77 E-value=0.0051 Score=57.44 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.|.|.|+|||||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999985
No 428
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.77 E-value=0.005 Score=56.97 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l 278 (594)
-|.|.|+|||||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 429
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.75 E-value=0.0055 Score=57.99 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+++-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445688999999999999999998874
No 430
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.73 E-value=0.0078 Score=60.54 Aligned_cols=39 Identities=23% Similarity=0.060 Sum_probs=30.2
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc-----CCCEEEEeccccc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS-----DFPFVKIISAESM 571 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~-----~~~fi~v~~~e~~ 571 (594)
|+.-++++||||||||+||-.+|.+. +-..+.|++.+-+
T Consensus 27 ~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 27 QSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp CSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 34468999999999999987776443 6778888877654
No 431
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.72 E-value=0.0069 Score=57.96 Aligned_cols=35 Identities=17% Similarity=0.437 Sum_probs=27.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
-|+|.|+||+||||+++.+++.++ ...++..+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHHH
Confidence 479999999999999999999884 34566555543
No 432
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.71 E-value=0.0074 Score=66.58 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=31.4
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEec
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIIS 567 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~ 567 (594)
.+.-|+|.|+||||||++|++||... |.+|+.+++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 45669999999999999999999988 999999874
No 433
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.70 E-value=0.0099 Score=61.13 Aligned_cols=42 Identities=24% Similarity=0.109 Sum_probs=32.4
Q ss_pred hcCCCcceEEEeecCCCCchHHHHHHHHhhcC---------CCEEEEeccc
Q 007661 528 VSKGSPLVTCLLEGPSGSGKTALAATAGIDSD---------FPFVKIISAE 569 (594)
Q Consensus 528 ~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~~---------~~fi~v~~~e 569 (594)
..+..+..-++++||||||||+|++.+|.... -..+.|++-+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 34566667789999999999999999997762 3457776644
No 434
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.68 E-value=0.0064 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhC
Q 007661 257 MLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l~ 279 (594)
|.|.|++||||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999873
No 435
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.68 E-value=0.0045 Score=58.97 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=23.0
Q ss_pred CCCcceEEEeecCCCCchHHHHHHHHhh
Q 007661 530 KGSPLVTCLLEGPSGSGKTALAATAGID 557 (594)
Q Consensus 530 ~~~p~~gvLL~GPpG~GKT~lAkalA~~ 557 (594)
+..+..-++++||||||||+|++.+|..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445566899999999999999999943
No 436
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.64 E-value=0.018 Score=53.94 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.++.-+.|.||+|+||||+++.++..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345568899999999999999999876
No 437
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.62 E-value=0.0071 Score=56.59 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.++.-+.|.||+|+||||+++.++..+
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 344568899999999999999999886
No 438
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.62 E-value=0.0064 Score=57.09 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+++.+.|.||+|+||||+++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456789999999999999999998763
No 439
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.62 E-value=0.0089 Score=57.68 Aligned_cols=36 Identities=22% Similarity=0.437 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
+..|.|.|||||||||+++.+++.+. +.+++...+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d~g~~~ 44 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG---ARYLDTGAMY 44 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCCcHH
Confidence 45799999999999999999999884 3455555543
No 440
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.61 E-value=0.0083 Score=60.99 Aligned_cols=41 Identities=22% Similarity=0.109 Sum_probs=31.0
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhc---------CCCEEEEeccc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIISAE 569 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---------~~~fi~v~~~e 569 (594)
.+..+..-++++||||||||++|..+|... +.+.+.+...+
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 345566678999999999999999999765 44566665543
No 441
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.61 E-value=0.01 Score=55.96 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=24.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+++.-+.|.||+|+||||+++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4555688999999999999999999874
No 442
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.61 E-value=0.0088 Score=56.20 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
-|.|.||+||||||+++.++. + +. .+++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l-g~--~~id~d~~~ 36 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L-GV--PLVDADVVA 36 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T-TC--CEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-CC--cccchHHHH
Confidence 578999999999999999987 4 33 345655543
No 443
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.59 E-value=0.099 Score=49.61 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=16.7
Q ss_pred CCceEEEEcCCCCcHHHHHH
Q 007661 253 HVKGMLLYGPPGTGKTLMAR 272 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar 272 (594)
..+.+++.+|+|+|||+.+-
T Consensus 56 ~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 56 QGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TTCCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCChHHHHHH
Confidence 34689999999999998654
No 444
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.57 E-value=0.0091 Score=53.96 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=25.3
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+++..-+.|.||.|+||||++|.++..+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45566678999999999999999999987
No 445
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.56 E-value=0.032 Score=52.82 Aligned_cols=19 Identities=32% Similarity=0.260 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 007661 255 KGMLLYGPPGTGKTLMARQ 273 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ 273 (594)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 6799999999999987443
No 446
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.54 E-value=0.0098 Score=60.18 Aligned_cols=26 Identities=31% Similarity=0.508 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
++.|+|+||+|||||++++.+|+.++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999984
No 447
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.53 E-value=0.0078 Score=57.72 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=28.1
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
..-|.+.|++|||||++|+.||...|++|+-
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 3468999999999999999999999999965
No 448
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.53 E-value=0.012 Score=56.60 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=28.6
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcC--CCEEEEecc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSD--FPFVKIISA 568 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~--~~fi~v~~~ 568 (594)
+..-|.|.|||||||||+++.|+...+ .+++...-|
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p 62 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREP 62 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCC
Confidence 455689999999999999999998765 677665443
No 449
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.53 E-value=0.0082 Score=57.22 Aligned_cols=35 Identities=17% Similarity=0.428 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVL 292 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~ 292 (594)
..|.|.||+||||||+++.+++.+. +..++..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g---~~~~d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CCcccCccee
Confidence 4689999999999999999999874 3345544443
No 450
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.52 E-value=0.011 Score=57.79 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCC-------CcEEEecchhhh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGM-------EPKIVNGPEVLS 293 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~-------~~~~v~~~~l~~ 293 (594)
.+.-|.|.|++||||||+++.+++.+... .+..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 44568999999999999999999987421 234677766654
No 451
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.52 E-value=0.012 Score=56.61 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=29.3
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEecc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISA 568 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~~ 568 (594)
.+..+..-++++||||+|||++|..+|.. .+-+.+.+...
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 34556667899999999999999888753 35566665543
No 452
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.52 E-value=0.0075 Score=55.84 Aligned_cols=34 Identities=21% Similarity=0.514 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
-+.|.||+|+||||+++.++....+ .+.+++.++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g--~~~i~~d~~ 37 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN--SAYIEGDII 37 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS--EEEEEHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC--eEEEcccch
Confidence 4789999999999999999986532 245666554
No 453
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.52 E-value=0.03 Score=57.03 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=19.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKM 277 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~ 277 (594)
.+++++.+|+|+|||+.+-..+..
T Consensus 44 ~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 44 EYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHH
Confidence 368999999999999987655443
No 454
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.51 E-value=0.0056 Score=59.15 Aligned_cols=38 Identities=32% Similarity=0.199 Sum_probs=27.1
Q ss_pred CCCcceEEEeecCCCCchHHHHHHHH--h--hcCCCEEEEec
Q 007661 530 KGSPLVTCLLEGPSGSGKTALAATAG--I--DSDFPFVKIIS 567 (594)
Q Consensus 530 ~~~p~~gvLL~GPpG~GKT~lAkalA--~--~~~~~fi~v~~ 567 (594)
+..+..-++|.||+|||||+|++.+| . ..+-..+.+.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 34455668999999999999999998 2 23444444443
No 455
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.50 E-value=0.011 Score=55.71 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+++.-|.|.|++|+||||+++.++..+. .+.+++..++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCcc
Confidence 4455688999999999999999998763 2445555544
No 456
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.49 E-value=0.035 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIG 275 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia 275 (594)
..+.+++.||+|||||++...+.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 35679999999999998766554
No 457
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.49 E-value=0.013 Score=56.40 Aligned_cols=36 Identities=19% Similarity=-0.026 Sum_probs=26.4
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc-------CCCEEEEecc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS-------DFPFVKIISA 568 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~-------~~~fi~v~~~ 568 (594)
+..=|.|.||+|||||++++.|+... |++.+...-|
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep 66 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP 66 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence 34458999999999999999999765 7777777666
No 458
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.47 E-value=0.013 Score=59.04 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+.++.-+.|.||+|+||||+++.++..+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35567779999999999999999999886
No 459
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.46 E-value=0.022 Score=51.39 Aligned_cols=31 Identities=23% Similarity=0.218 Sum_probs=25.7
Q ss_pred hcCCCcceEEEeecCCCCchHHHHHHHHhhc
Q 007661 528 VSKGSPLVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 528 ~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
.....+..-+.|.||.|||||+|.+.+|...
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3455666678999999999999999999764
No 460
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.45 E-value=0.025 Score=64.40 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=35.6
Q ss_pred ccccccCCccCcHHHHHHHHHHHHHccCCC--hhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007661 213 EFNLQSLGIGGLSAEFADIFRRAFASRVFP--PHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKM 277 (594)
Q Consensus 213 ~~~~~~~~igGl~~~~~~i~~~~~~~~~~~--~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~ 277 (594)
..+|++ -|+...+.+++......|... .++... +.....+++.||+|+|||+++..++..
T Consensus 71 ~~~f~~---~~l~~~~~~~l~~r~~lP~~~q~~~i~~~--l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 71 INPFTG---REFTPKYVDILKIRRELPVHAQRDEFLKL--YQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp BCTTTC---SBCCHHHHHHHHHHTTSGGGGGHHHHHHH--HHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCccc---cCCCHHHHHHHHHhhcCChHHHHHHHHHH--HhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345776 345555655655544444322 112111 233457999999999999977776543
No 461
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.44 E-value=0.0071 Score=55.30 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=19.3
Q ss_pred cceEEEeecCCCCchHHHHHHHH
Q 007661 533 PLVTCLLEGPSGSGKTALAATAG 555 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA 555 (594)
+..-+.|.||+|||||+|++++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34558999999999999999754
No 462
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.44 E-value=0.0083 Score=57.23 Aligned_cols=29 Identities=17% Similarity=0.505 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
++++.-+.|.||+|+||||+++.++....
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45556689999999999999999998763
No 463
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.011 Score=54.57 Aligned_cols=47 Identities=23% Similarity=0.176 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEEEeecCCCCchHHHHHHHHhhc
Q 007661 512 HKHIYQRAMLLVEQVKVSKGSPLVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~p~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
+..+...+.............+...|++.|++|+|||+|..+++...
T Consensus 26 ~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44444444444444433334556689999999999999999998654
No 464
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.42 E-value=0.015 Score=59.70 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=30.7
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhc---------CCCEEEEeccc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIISAE 569 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---------~~~fi~v~~~e 569 (594)
.+..+..-++++||||||||+||..+|..+ +.+.+.|+.-+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 355566668999999999999999999863 44555565443
No 465
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.39 E-value=0.026 Score=54.20 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhhc
Q 007661 256 GMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLSK 294 (594)
Q Consensus 256 giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~~ 294 (594)
.+-|.||||+||||+++.+++.++ +..++..+++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~ 45 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRA 45 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHH
Confidence 467899999999999999999884 345666565543
No 466
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.38 E-value=0.01 Score=60.26 Aligned_cols=31 Identities=23% Similarity=0.078 Sum_probs=26.7
Q ss_pred eEEEeecCCCCchHHHHHHHHhhcCCCEEEEec
Q 007661 535 VTCLLEGPSGSGKTALAATAGIDSDFPFVKIIS 567 (594)
Q Consensus 535 ~gvLL~GPpG~GKT~lAkalA~~~~~~fi~v~~ 567 (594)
..++++||+|||||+|++.++.+.+ .+.++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEe
Confidence 4799999999999999999999876 666654
No 467
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.36 E-value=0.013 Score=54.96 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.2
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhcC
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~~ 559 (594)
+..-+.|.||+|||||+|+++|+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 445588999999999999999998764
No 468
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.33 E-value=0.011 Score=59.47 Aligned_cols=31 Identities=29% Similarity=0.603 Sum_probs=27.4
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 249 LGIKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 249 ~g~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.+++...+.|+||+|+|||||++.++..+.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 4567778899999999999999999999873
No 469
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.33 E-value=0.0092 Score=55.24 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+-+.|.||+|+||||+++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 470
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.32 E-value=0.0069 Score=56.84 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=21.2
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
..-+.|.||+|+|||+|++.|+...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4458999999999999999998654
No 471
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.30 E-value=0.01 Score=55.11 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=22.9
Q ss_pred EEeecCCCCchHHHHHHHHhhcCCCE
Q 007661 537 CLLEGPSGSGKTALAATAGIDSDFPF 562 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~~~f 562 (594)
|.|.||+|+|||+|++.|..+..-+|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 78999999999999999988775555
No 472
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.30 E-value=0.015 Score=59.90 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.6
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l 278 (594)
.+.++.-+.|.||+|+||||+++.++..+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45667779999999999999999999887
No 473
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.29 E-value=0.012 Score=60.65 Aligned_cols=41 Identities=20% Similarity=0.050 Sum_probs=32.4
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEeccc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAE 569 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~~e 569 (594)
.+..+..-++++||||||||+||..+|.+ .+.+.+.++..+
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34566677999999999999999998864 467788787643
No 474
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.29 E-value=0.043 Score=59.28 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=31.1
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~ 288 (594)
|+.+..-++|.|+||+|||+++..+|.... +..+.+++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 677778899999999999999999997763 345566554
No 475
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.28 E-value=0.042 Score=58.34 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEec
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVNG 288 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~~ 288 (594)
|+.+..-++|.|+||+|||+++..+|... .+..+.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 67777789999999999999999998765 2344555543
No 476
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.28 E-value=0.016 Score=54.90 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchhhh
Q 007661 254 VKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEVLS 293 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l~~ 293 (594)
+.-|.|.|++||||||+++.++. + + +.+++..++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l-g--~~~id~D~~~~ 39 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L-G--INVIDADIIAR 39 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T-T--CEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c-C--CEEEEccHHHH
Confidence 45689999999999999999998 5 2 34566655443
No 477
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.27 E-value=0.0089 Score=55.36 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred EEeecCCCCchHHHHHHHHhhcC
Q 007661 537 CLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~ 559 (594)
+.|.||+|||||+|++.|+....
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999996543
No 478
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.25 E-value=0.014 Score=60.08 Aligned_cols=41 Identities=22% Similarity=0.059 Sum_probs=31.2
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhh---cCCCEEEEeccc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGID---SDFPFVKIISAE 569 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~---~~~~fi~v~~~e 569 (594)
.+..+..-++++||||||||+||..+|.. .+.+.+.+...+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 35556667899999999999999999854 356666666544
No 479
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.25 E-value=0.0038 Score=58.93 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEeecCCCCchHHHHHHHHhhcC
Q 007661 537 CLLEGPSGSGKTALAATAGIDSD 559 (594)
Q Consensus 537 vLL~GPpG~GKT~lAkalA~~~~ 559 (594)
|.|.||+||||||+|+.|+...+
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998764
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.22 E-value=0.014 Score=53.29 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.4
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcCCCEEE
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSDFPFVK 564 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~~~fi~ 564 (594)
..|+||.||+|+|||++|.++... |..|++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lva 45 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLVC 45 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEec
Confidence 468999999999999999999974 566655
No 481
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.21 E-value=0.13 Score=59.62 Aligned_cols=44 Identities=23% Similarity=0.284 Sum_probs=33.4
Q ss_pred ccCcHHHHHHHHHHHHHccCCChhhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHh
Q 007661 221 IGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKM 277 (594)
Q Consensus 221 igGl~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lar~ia~~ 277 (594)
..|.+.++++| .+.+... ...+-|.++||+|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL-~elL~~~------------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKL-RQALLEL------------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHH-HHHHHHC------------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHH-HHHHhcc------------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 48899999888 5544311 12456899999999999999999853
No 482
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.19 E-value=0.036 Score=63.97 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGK 276 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~ 276 (594)
....-++|.||.|+||||+.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 4455689999999999999999874
No 483
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.18 E-value=0.029 Score=53.34 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=28.5
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhc---CCCEEEEecc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDS---DFPFVKIISA 568 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~---~~~fi~v~~~ 568 (594)
..=|.|.||+|||||++++.|+... |++.+...-|
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p 43 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREP 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCC
Confidence 4457899999999999999999644 6788777666
No 484
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.17 E-value=0.02 Score=55.12 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNG 280 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~ 280 (594)
.+.-|.|.||||+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4456889999999999999999999863
No 485
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.13 E-value=0.064 Score=54.64 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCCcHHHHHHHHHHhh--CCCCcEEEe
Q 007661 250 GIKHVKGMLLYGPPGTGKTLMARQIGKML--NGMEPKIVN 287 (594)
Q Consensus 250 g~~~~~giLL~GppGtGKT~lar~ia~~l--~~~~~~~v~ 287 (594)
|+.+..-++|.|+||+|||+++..+|... .+..+.+++
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 67777779999999999999999998765 234444443
No 486
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.08 E-value=0.017 Score=60.34 Aligned_cols=37 Identities=35% Similarity=0.381 Sum_probs=32.2
Q ss_pred ceEEEeecCCCCchHHHHHHHHhhcC---CCEEEEecccc
Q 007661 534 LVTCLLEGPSGSGKTALAATAGIDSD---FPFVKIISAES 570 (594)
Q Consensus 534 ~~gvLL~GPpG~GKT~lAkalA~~~~---~~fi~v~~~e~ 570 (594)
...+|++|++|||||++|+++...+. -+|+.|+++.+
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~ 199 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASI 199 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTS
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCC
Confidence 34589999999999999999997764 79999998765
No 487
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.08 E-value=0.19 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhh
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKML 278 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l 278 (594)
..++|+||+|+|||+|++.++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 458999999999999999988664
No 488
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.08 E-value=0.013 Score=55.22 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 251 IKHVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 251 ~~~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
+.+..-+.|.||+|+||||+++.++..+.
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34556688999999999999999998874
No 489
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.04 E-value=0.019 Score=56.09 Aligned_cols=36 Identities=19% Similarity=0.432 Sum_probs=27.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecchh
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPEV 291 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~l 291 (594)
+..-|.|.||+||||||+++.+++.+. +..++...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg---~~~~d~g~i 61 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN---WRLLDSGAI 61 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC---CCcCCCCce
Confidence 345688999999999999999999874 334444443
No 490
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.03 E-value=0.019 Score=59.98 Aligned_cols=41 Identities=17% Similarity=0.063 Sum_probs=29.7
Q ss_pred cCCCcceEEEeecCCCCchHHHHHHHHhhc---------CCCEEEEeccc
Q 007661 529 SKGSPLVTCLLEGPSGSGKTALAATAGIDS---------DFPFVKIISAE 569 (594)
Q Consensus 529 ~~~~p~~gvLL~GPpG~GKT~lAkalA~~~---------~~~fi~v~~~e 569 (594)
.+..+..-++|+||||||||+|+..+|... +-..+.+++-+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 455666678999999999999999877443 23366666544
No 491
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.02 E-value=0.05 Score=58.53 Aligned_cols=37 Identities=16% Similarity=0.330 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHhhC--CCCcEEEec
Q 007661 252 KHVKGMLLYGPPGTGKTLMARQIGKMLN--GMEPKIVNG 288 (594)
Q Consensus 252 ~~~~giLL~GppGtGKT~lar~ia~~l~--~~~~~~v~~ 288 (594)
..++.|++.|+||+||||++..++..+. +..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3567899999999999999999997763 345555654
No 492
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.01 E-value=0.024 Score=58.01 Aligned_cols=25 Identities=32% Similarity=0.729 Sum_probs=22.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
.+|+|+||||+||||++++++..+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4699999999999999999999874
No 493
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.00 E-value=0.1 Score=49.64 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=16.2
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 007661 254 VKGMLLYGPPGTGKTLMAR 272 (594)
Q Consensus 254 ~~giLL~GppGtGKT~lar 272 (594)
.+++++.+|+|+|||...-
T Consensus 61 ~~~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp TCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHH
Confidence 4689999999999998743
No 494
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.00 E-value=0.013 Score=58.44 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=30.5
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHhhC---CCCcEEEec
Q 007661 249 LGIKHVKGMLLYGPPGTGKTLMARQIGKMLN---GMEPKIVNG 288 (594)
Q Consensus 249 ~g~~~~~giLL~GppGtGKT~lar~ia~~l~---~~~~~~v~~ 288 (594)
+|+.+..-++|.||||+||||+++.++..+. +..+.+++.
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3667777899999999999999999998763 324444443
No 495
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.99 E-value=0.011 Score=56.51 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.5
Q ss_pred CcceEEEeecCCCCchHHHHHHHHhhc
Q 007661 532 SPLVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 532 ~p~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
.+..-+.|.||+|||||+|++.|+...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344458899999999999999999866
No 496
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.98 E-value=0.012 Score=55.40 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.2
Q ss_pred cceEEEeecCCCCchHHHHHHHHhhc
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGIDS 558 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~~~ 558 (594)
+..-+.|.||+|||||+|+++|+...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34457899999999999999999765
No 497
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.97 E-value=0.013 Score=58.67 Aligned_cols=34 Identities=29% Similarity=0.290 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHhhCCCCcEEEecch
Q 007661 255 KGMLLYGPPGTGKTLMARQIGKMLNGMEPKIVNGPE 290 (594)
Q Consensus 255 ~giLL~GppGtGKT~lar~ia~~l~~~~~~~v~~~~ 290 (594)
+-|+|.|+||+||||+++.+++.+. .+.+++...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~D~ 36 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDD 36 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST--TEEEECHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCC--CcEEecccH
Confidence 4689999999999999999998642 234555443
No 498
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.96 E-value=0.01 Score=58.81 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.7
Q ss_pred cceEEEeecCCCCchHHHHHHHHh
Q 007661 533 PLVTCLLEGPSGSGKTALAATAGI 556 (594)
Q Consensus 533 p~~gvLL~GPpG~GKT~lAkalA~ 556 (594)
+..-++++||||||||+|++.+|.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 345589999999999999999984
No 499
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.94 E-value=0.014 Score=54.98 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHhhC
Q 007661 253 HVKGMLLYGPPGTGKTLMARQIGKMLN 279 (594)
Q Consensus 253 ~~~giLL~GppGtGKT~lar~ia~~l~ 279 (594)
++.-+.|.||+|+||||+++.++..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445688999999999999999999874
No 500
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.93 E-value=0.027 Score=52.56 Aligned_cols=95 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh--CCCCcEEE-------ecchhhhcccchh-----HHHHHHHHHHHHhhccccCCCCC
Q 007661 257 MLLYGPPGTGKTLMARQIGKML--NGMEPKIV-------NGPEVLSKFVGET-----EKNIRDLFADAENDQRTRGDQSD 322 (594)
Q Consensus 257 iLL~GppGtGKT~lar~ia~~l--~~~~~~~v-------~~~~l~~~~~g~~-----~~~i~~lf~~a~~~~~~~~~~~~ 322 (594)
.+++||+|+||||.+-.+++.+ .+..+..+ .+...+....|.. .....++++.+...
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~--------- 81 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEED--------- 81 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTT---------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhcc---------
Q ss_pred cEEEEEccchhhhccCCCCCCCCchHHHHHHHHHHhhcCccccCcEEEEEeeCCcc
Q 007661 323 LHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKD 378 (594)
Q Consensus 323 ~~Il~iDEid~l~~~~~~~~~~~~~~~~~v~~Ll~~ld~~~~~~~v~vI~~tn~~~ 378 (594)
.++|+|||+..+ ....+..+....+ .++.||.+.-+.+
T Consensus 82 ~dvViIDEaqfl-------------~~~~v~~l~~l~~-----~~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 82 TEVIAIDEVQFF-------------DDEIVEIVNKIAE-----SGRRVICAGLDMD 119 (191)
T ss_dssp CSEEEECSGGGS-------------CTHHHHHHHHHHH-----TTCEEEEEECSBC
T ss_pred CCEEEEECCCCC-------------CHHHHHHHHHHHh-----CCCEEEEEecccc
Done!