Query 007664
Match_columns 594
No_of_seqs 110 out of 121
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 13:41:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05911 DUF869: Plant protein 100.0 9E-115 2E-119 969.8 46.0 467 79-592 1-738 (769)
2 COG1196 Smc Chromosome segrega 98.2 0.032 7E-07 67.7 51.9 80 60-139 232-318 (1163)
3 TIGR02168 SMC_prok_B chromosom 98.2 0.026 5.7E-07 66.1 49.7 75 387-461 675-749 (1179)
4 TIGR02169 SMC_prok_A chromosom 98.1 0.04 8.7E-07 65.0 54.0 52 389-440 674-725 (1164)
5 PF00261 Tropomyosin: Tropomyo 97.8 0.0078 1.7E-07 60.6 23.1 57 494-557 172-228 (237)
6 PF00261 Tropomyosin: Tropomyo 97.7 0.0049 1.1E-07 62.1 20.5 35 498-532 127-161 (237)
7 PF09730 BicD: Microtubule-ass 97.7 0.18 3.9E-06 58.9 46.3 166 395-560 264-453 (717)
8 PF05911 DUF869: Plant protein 97.5 0.43 9.3E-06 56.3 39.7 153 386-551 593-747 (769)
9 PF12718 Tropomyosin_1: Tropom 97.1 0.085 1.8E-06 50.0 19.6 135 386-556 4-138 (143)
10 KOG0161 Myosin class II heavy 97.1 0.11 2.4E-06 66.0 25.8 180 387-566 962-1144(1930)
11 KOG0161 Myosin class II heavy 97.1 1.6 3.5E-05 56.0 44.1 179 386-575 1615-1797(1930)
12 TIGR02169 SMC_prok_A chromosom 96.9 1.6 3.4E-05 51.9 54.0 64 386-449 678-741 (1164)
13 PRK11637 AmiB activator; Provi 96.7 1.3 2.9E-05 48.2 27.3 76 387-462 45-120 (428)
14 PRK11637 AmiB activator; Provi 96.5 0.78 1.7E-05 49.9 23.3 79 384-462 49-127 (428)
15 PRK02224 chromosome segregatio 96.4 2.9 6.2E-05 49.2 50.2 53 506-560 614-666 (880)
16 PF12718 Tropomyosin_1: Tropom 96.4 0.66 1.4E-05 44.1 19.1 7 548-554 116-122 (143)
17 PF00038 Filament: Intermediat 96.3 1.6 3.4E-05 45.0 25.5 180 387-566 52-281 (312)
18 TIGR02168 SMC_prok_B chromosom 96.3 3.5 7.7E-05 48.7 50.9 80 389-468 670-749 (1179)
19 PF05701 WEMBL: Weak chloropla 96.2 1.8 3.8E-05 48.9 24.6 134 424-568 211-358 (522)
20 KOG4674 Uncharacterized conser 96.2 6.4 0.00014 50.5 43.5 460 81-562 210-820 (1822)
21 PRK09039 hypothetical protein; 96.2 0.99 2.1E-05 48.4 21.5 133 397-536 47-182 (343)
22 PF07888 CALCOCO1: Calcium bin 96.0 1.7 3.7E-05 49.6 23.3 73 387-459 141-213 (546)
23 KOG0977 Nuclear envelope prote 95.9 1.8 3.9E-05 49.5 22.7 166 388-571 41-230 (546)
24 PRK02224 chromosome segregatio 95.6 6.7 0.00015 46.2 43.5 140 397-537 531-692 (880)
25 PF12128 DUF3584: Protein of u 95.5 9.4 0.0002 47.3 51.0 63 386-448 604-666 (1201)
26 KOG1003 Actin filament-coating 95.4 3.5 7.6E-05 41.7 22.8 147 386-536 15-175 (205)
27 PF00038 Filament: Intermediat 95.3 4.3 9.4E-05 41.9 27.8 66 385-450 71-136 (312)
28 PF10174 Cast: RIM-binding pro 95.2 5.7 0.00012 47.3 24.5 51 511-562 513-563 (775)
29 PF15070 GOLGA2L5: Putative go 95.1 7.6 0.00016 45.1 24.7 132 436-571 92-227 (617)
30 COG1579 Zn-ribbon protein, pos 95.1 2.5 5.3E-05 43.8 18.8 47 387-433 36-82 (239)
31 PF05667 DUF812: Protein of un 94.5 5 0.00011 46.4 21.1 172 388-559 327-510 (594)
32 KOG0250 DNA repair protein RAD 94.5 9.8 0.00021 46.6 24.0 79 405-485 264-342 (1074)
33 PF09726 Macoilin: Transmembra 94.4 5.2 0.00011 47.0 21.4 30 506-535 546-575 (697)
34 KOG0996 Structural maintenance 94.3 11 0.00025 46.5 24.2 151 384-534 400-564 (1293)
35 TIGR00606 rad50 rad50. This fa 94.3 20 0.00043 44.9 43.0 100 465-566 798-900 (1311)
36 PF14662 CCDC155: Coiled-coil 94.1 7.4 0.00016 39.3 22.9 166 393-558 19-190 (193)
37 PHA02562 46 endonuclease subun 94.0 12 0.00026 41.5 24.3 36 421-456 217-252 (562)
38 PF09726 Macoilin: Transmembra 94.0 6.2 0.00013 46.4 20.8 23 386-408 457-479 (697)
39 PF04849 HAP1_N: HAP1 N-termin 93.9 5.7 0.00012 42.6 18.7 139 389-527 160-305 (306)
40 COG1196 Smc Chromosome segrega 93.8 23 0.00049 43.9 46.8 175 390-564 668-859 (1163)
41 COG1579 Zn-ribbon protein, pos 93.8 9.7 0.00021 39.5 21.4 127 404-546 18-144 (239)
42 KOG0933 Structural maintenance 93.7 3.7 8.1E-05 49.8 18.5 124 412-535 789-936 (1174)
43 PF10473 CENP-F_leu_zip: Leuci 93.7 6.9 0.00015 37.6 17.8 90 388-477 9-105 (140)
44 KOG1029 Endocytic adaptor prot 93.6 8 0.00017 46.1 20.4 95 385-479 440-534 (1118)
45 KOG0963 Transcription factor/C 93.4 4 8.7E-05 47.2 17.6 102 422-529 240-341 (629)
46 PF07888 CALCOCO1: Calcium bin 93.4 18 0.0004 41.6 26.3 82 387-468 148-236 (546)
47 PRK03918 chromosome segregatio 93.2 22 0.00048 41.8 26.1 18 412-429 202-219 (880)
48 PF01576 Myosin_tail_1: Myosin 93.2 0.026 5.6E-07 66.8 0.0 155 405-563 548-702 (859)
49 PF05557 MAD: Mitotic checkpoi 93.0 0.084 1.8E-06 61.1 3.8 34 504-537 502-535 (722)
50 PRK03918 chromosome segregatio 92.5 27 0.00058 41.1 45.4 67 193-262 304-372 (880)
51 TIGR00606 rad50 rad50. This fa 92.5 37 0.0008 42.6 42.3 27 193-219 574-600 (1311)
52 KOG0612 Rho-associated, coiled 92.2 39 0.00085 42.2 35.6 55 67-121 475-534 (1317)
53 KOG4674 Uncharacterized conser 91.7 54 0.0012 42.7 38.6 183 58-264 634-824 (1822)
54 KOG1029 Endocytic adaptor prot 91.3 18 0.0004 43.3 19.5 56 497-552 530-589 (1118)
55 PF08614 ATG16: Autophagy prot 90.6 3.3 7.2E-05 40.7 11.4 28 498-525 151-178 (194)
56 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.4 15 0.00033 34.2 18.4 42 386-427 7-48 (132)
57 KOG0995 Centromere-associated 90.3 17 0.00038 41.9 17.9 100 454-560 289-391 (581)
58 KOG0971 Microtubule-associated 90.3 39 0.00083 41.3 21.1 87 451-537 324-442 (1243)
59 KOG0933 Structural maintenance 89.8 60 0.0013 40.1 47.5 127 131-259 361-500 (1174)
60 PRK04863 mukB cell division pr 89.7 72 0.0016 41.0 24.3 24 504-527 455-478 (1486)
61 KOG0971 Microtubule-associated 89.0 65 0.0014 39.5 25.2 162 394-564 229-413 (1243)
62 PRK09039 hypothetical protein; 89.0 35 0.00075 36.9 18.3 64 497-560 122-185 (343)
63 PF09730 BicD: Microtubule-ass 88.9 59 0.0013 38.8 31.5 152 102-264 265-438 (717)
64 PF05701 WEMBL: Weak chloropla 88.8 48 0.001 37.7 40.1 154 418-571 282-439 (522)
65 PF10481 CENP-F_N: Cenp-F N-te 88.6 17 0.00038 38.7 15.2 88 394-481 16-103 (307)
66 PF10473 CENP-F_leu_zip: Leuci 88.5 24 0.00053 33.9 18.9 110 400-520 7-116 (140)
67 KOG0976 Rho/Rac1-interacting s 88.2 69 0.0015 38.9 32.1 73 386-458 334-406 (1265)
68 PF13851 GAS: Growth-arrest sp 87.6 33 0.00071 34.4 18.5 59 398-456 29-87 (201)
69 PF15619 Lebercilin: Ciliary p 87.5 33 0.00072 34.4 19.1 33 498-530 157-189 (194)
70 KOG0994 Extracellular matrix g 87.4 34 0.00074 42.8 18.3 134 391-535 1614-1747(1758)
71 KOG0977 Nuclear envelope prote 87.4 63 0.0014 37.4 20.4 98 388-485 98-195 (546)
72 PRK04863 mukB cell division pr 87.2 1E+02 0.0023 39.7 25.2 27 510-536 440-466 (1486)
73 KOG0976 Rho/Rac1-interacting s 87.1 80 0.0017 38.4 22.5 68 390-457 100-167 (1265)
74 PF13851 GAS: Growth-arrest sp 86.9 36 0.00078 34.2 16.7 123 81-227 2-124 (201)
75 KOG0612 Rho-associated, coiled 86.8 98 0.0021 39.0 22.0 59 404-462 466-525 (1317)
76 PF04156 IncA: IncA protein; 86.7 31 0.00068 33.2 16.1 44 497-540 129-172 (191)
77 PF05667 DUF812: Protein of un 86.3 74 0.0016 37.2 22.1 63 386-448 318-380 (594)
78 PRK04778 septation ring format 86.1 69 0.0015 36.7 22.1 42 222-263 175-216 (569)
79 KOG0964 Structural maintenance 85.6 1E+02 0.0022 38.2 42.6 147 391-537 673-839 (1200)
80 KOG0964 Structural maintenance 85.6 61 0.0013 40.0 19.0 150 397-560 192-341 (1200)
81 TIGR01843 type_I_hlyD type I s 85.4 53 0.0012 34.7 19.9 13 397-409 138-150 (423)
82 PF04156 IncA: IncA protein; 85.0 38 0.00082 32.7 16.3 38 390-427 82-119 (191)
83 PF08317 Spc7: Spc7 kinetochor 84.5 60 0.0013 34.6 17.0 34 503-536 228-261 (325)
84 KOG0999 Microtubule-associated 84.4 91 0.002 36.5 34.8 136 391-534 313-457 (772)
85 KOG0980 Actin-binding protein 83.2 1.2E+02 0.0026 37.1 21.3 88 396-483 424-511 (980)
86 TIGR01843 type_I_hlyD type I s 82.7 69 0.0015 33.8 19.9 26 386-411 78-103 (423)
87 PF08614 ATG16: Autophagy prot 82.5 11 0.00023 37.2 9.9 20 497-516 164-183 (194)
88 KOG4643 Uncharacterized coiled 82.3 1.4E+02 0.0031 37.1 21.7 60 494-559 385-444 (1195)
89 PF07111 HCR: Alpha helical co 82.3 1.2E+02 0.0026 36.3 24.1 163 390-555 163-364 (739)
90 KOG1003 Actin filament-coating 81.9 65 0.0014 33.0 18.2 39 498-536 144-182 (205)
91 PF10174 Cast: RIM-binding pro 81.9 1.3E+02 0.0028 36.4 39.1 182 57-264 14-202 (775)
92 PF00769 ERM: Ezrin/radixin/mo 81.8 68 0.0015 33.1 16.9 50 408-457 3-52 (246)
93 PRK04778 septation ring format 81.6 1.1E+02 0.0023 35.2 22.9 20 194-213 110-129 (569)
94 PF08317 Spc7: Spc7 kinetochor 81.4 79 0.0017 33.7 21.2 39 498-536 209-247 (325)
95 COG4942 Membrane-bound metallo 81.3 1E+02 0.0022 34.8 22.7 64 386-449 42-105 (420)
96 PF15619 Lebercilin: Ciliary p 80.8 66 0.0014 32.3 20.6 56 506-561 126-185 (194)
97 KOG0946 ER-Golgi vesicle-tethe 80.6 97 0.0021 37.7 17.9 53 510-562 860-912 (970)
98 PF12795 MscS_porin: Mechanose 79.1 77 0.0017 32.1 16.5 46 401-446 83-128 (240)
99 PF08826 DMPK_coil: DMPK coile 78.6 29 0.00062 29.2 9.6 45 493-537 13-57 (61)
100 PF01576 Myosin_tail_1: Myosin 78.6 0.65 1.4E-05 55.3 0.0 161 396-560 398-559 (859)
101 PRK01156 chromosome segregatio 78.2 1.6E+02 0.0034 35.3 24.2 174 386-560 526-739 (895)
102 KOG4807 F-actin binding protei 78.1 1.3E+02 0.0027 34.1 17.6 113 59-174 244-378 (593)
103 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.8 60 0.0013 30.2 18.1 30 398-427 5-34 (132)
104 KOG1899 LAR transmembrane tyro 77.7 44 0.00095 39.4 13.8 143 386-528 115-261 (861)
105 PF09304 Cortex-I_coil: Cortex 77.2 63 0.0014 30.1 13.6 74 394-467 14-94 (107)
106 COG4942 Membrane-bound metallo 77.0 1.4E+02 0.0029 33.8 26.4 73 389-461 38-110 (420)
107 smart00787 Spc7 Spc7 kinetocho 76.4 1.2E+02 0.0025 32.7 18.9 41 497-537 217-257 (312)
108 PF04111 APG6: Autophagy prote 76.2 53 0.0012 35.1 13.3 84 385-468 46-129 (314)
109 PF14915 CCDC144C: CCDC144C pr 75.5 1.3E+02 0.0027 32.7 21.7 86 389-481 144-229 (305)
110 smart00787 Spc7 Spc7 kinetocho 75.2 1.2E+02 0.0027 32.5 19.0 37 500-536 206-242 (312)
111 KOG4593 Mitotic checkpoint pro 75.2 1.9E+02 0.0041 34.6 20.4 140 393-533 169-320 (716)
112 TIGR03007 pepcterm_ChnLen poly 75.0 1.4E+02 0.003 33.0 19.3 27 510-536 315-341 (498)
113 PF07989 Microtub_assoc: Micro 74.3 21 0.00047 30.8 8.0 65 193-263 4-68 (75)
114 KOG0980 Actin-binding protein 73.4 2.3E+02 0.0051 34.8 27.3 7 344-350 291-297 (980)
115 PF06160 EzrA: Septation ring 73.1 1.8E+02 0.0039 33.4 17.7 71 193-263 140-212 (560)
116 KOG0963 Transcription factor/C 72.9 2E+02 0.0044 33.9 19.6 47 511-560 284-330 (629)
117 KOG4643 Uncharacterized coiled 72.4 2.6E+02 0.0057 35.0 21.5 17 245-261 205-221 (1195)
118 KOG0804 Cytoplasmic Zn-finger 72.3 1.4E+02 0.003 34.1 15.5 13 523-535 432-444 (493)
119 TIGR02680 conserved hypothetic 71.5 3E+02 0.0065 35.2 23.4 137 395-536 229-371 (1353)
120 PF00769 ERM: Ezrin/radixin/mo 70.2 1.4E+02 0.003 30.9 17.5 91 393-483 2-92 (246)
121 KOG0804 Cytoplasmic Zn-finger 69.9 38 0.00082 38.4 10.6 55 98-152 357-411 (493)
122 PF12128 DUF3584: Protein of u 69.0 3.1E+02 0.0068 34.5 44.2 72 391-462 602-673 (1201)
123 PF10146 zf-C4H2: Zinc finger- 68.8 1.4E+02 0.0029 31.0 13.8 67 494-560 35-101 (230)
124 PF08826 DMPK_coil: DMPK coile 68.7 66 0.0014 27.1 9.4 27 497-523 31-57 (61)
125 PF06818 Fez1: Fez1; InterPro 68.6 1.5E+02 0.0032 30.5 14.0 22 521-542 133-154 (202)
126 PRK10884 SH3 domain-containing 68.3 87 0.0019 31.8 12.1 69 385-456 89-157 (206)
127 KOG0982 Centrosomal protein Nu 67.5 77 0.0017 35.9 12.3 104 463-566 212-344 (502)
128 PF10168 Nup88: Nuclear pore c 66.7 2.5E+02 0.0053 33.7 17.0 134 389-536 536-670 (717)
129 COG4026 Uncharacterized protei 66.6 99 0.0021 32.5 12.1 55 497-558 155-209 (290)
130 COG4026 Uncharacterized protei 66.5 89 0.0019 32.8 11.7 81 396-483 135-215 (290)
131 KOG0995 Centromere-associated 66.2 2.7E+02 0.0058 32.7 24.3 174 388-561 307-531 (581)
132 PF11559 ADIP: Afadin- and alp 66.2 1.2E+02 0.0025 28.6 13.9 26 470-495 105-130 (151)
133 PF05557 MAD: Mitotic checkpoi 66.2 1.9 4.2E-05 50.1 0.0 82 400-481 111-193 (722)
134 PF15066 CAGE1: Cancer-associa 65.5 2.6E+02 0.0056 32.2 21.1 51 410-460 383-433 (527)
135 KOG4673 Transcription factor T 65.3 3.1E+02 0.0068 33.1 21.6 154 386-542 577-762 (961)
136 KOG0018 Structural maintenance 65.2 3.7E+02 0.008 33.9 22.4 55 499-560 808-862 (1141)
137 PF10359 Fmp27_WPPW: RNA pol I 64.8 27 0.00058 39.2 8.5 35 382-416 156-190 (475)
138 PF04849 HAP1_N: HAP1 N-termin 63.3 1.3E+02 0.0029 32.5 12.8 57 387-443 232-288 (306)
139 PF09755 DUF2046: Uncharacteri 63.2 2.3E+02 0.005 30.9 21.0 159 398-560 108-285 (310)
140 PF10481 CENP-F_N: Cenp-F N-te 63.1 2.2E+02 0.0048 30.7 14.3 53 510-569 79-131 (307)
141 PF09738 DUF2051: Double stran 63.1 2.2E+02 0.0048 30.7 17.8 138 391-537 79-244 (302)
142 PF14073 Cep57_CLD: Centrosome 62.6 1.8E+02 0.0038 29.4 17.5 24 397-420 5-28 (178)
143 PRK10884 SH3 domain-containing 62.4 1.2E+02 0.0026 30.8 11.8 17 393-409 90-106 (206)
144 PF12777 MT: Microtubule-bindi 61.9 22 0.00047 38.1 6.9 65 397-468 215-279 (344)
145 PF15070 GOLGA2L5: Putative go 61.9 3.3E+02 0.0071 32.2 22.0 43 203-259 22-64 (617)
146 PF04111 APG6: Autophagy prote 61.7 1.3E+02 0.0029 32.2 12.6 50 397-446 44-93 (314)
147 KOG0999 Microtubule-associated 61.4 3.3E+02 0.0072 32.2 19.7 40 497-536 172-211 (772)
148 PF09728 Taxilin: Myosin-like 60.6 2.4E+02 0.0052 30.2 25.9 167 388-554 21-195 (309)
149 PRK11281 hypothetical protein; 60.3 1.7E+02 0.0037 36.8 14.7 54 396-449 128-181 (1113)
150 PF10498 IFT57: Intra-flagella 60.1 2.2E+02 0.0048 31.3 14.1 57 384-446 193-249 (359)
151 COG4372 Uncharacterized protei 59.2 3.1E+02 0.0067 31.1 25.0 96 390-485 75-177 (499)
152 PF15066 CAGE1: Cancer-associa 58.6 3.4E+02 0.0074 31.3 19.9 81 477-564 383-463 (527)
153 PF15290 Syntaphilin: Golgi-lo 58.5 46 0.00099 35.7 8.3 54 504-566 74-127 (305)
154 TIGR03007 pepcterm_ChnLen poly 58.4 2.9E+02 0.0064 30.6 22.0 30 506-535 318-347 (498)
155 PF10212 TTKRSYEDQ: Predicted 57.8 2.9E+02 0.0062 32.1 14.8 35 423-457 440-474 (518)
156 PF05278 PEARLI-4: Arabidopsis 57.2 1.1E+02 0.0024 32.6 10.8 42 408-449 191-232 (269)
157 PF05266 DUF724: Protein of un 57.1 1.8E+02 0.004 29.2 12.0 17 274-290 24-40 (190)
158 COG1340 Uncharacterized archae 56.4 2.9E+02 0.0063 29.9 24.6 66 423-488 33-98 (294)
159 PF10212 TTKRSYEDQ: Predicted 56.0 2.1E+02 0.0046 33.1 13.5 27 510-536 485-511 (518)
160 PF09787 Golgin_A5: Golgin sub 55.6 3.6E+02 0.0078 30.7 16.7 130 387-522 279-430 (511)
161 PF04899 MbeD_MobD: MbeD/MobD 54.6 1.2E+02 0.0025 26.2 8.7 54 483-536 5-59 (70)
162 PLN02939 transferase, transfer 54.4 5.3E+02 0.011 32.3 21.6 49 518-566 323-377 (977)
163 PRK10929 putative mechanosensi 54.0 2.7E+02 0.0058 35.2 14.9 24 530-553 259-282 (1109)
164 KOG0994 Extracellular matrix g 52.8 6.2E+02 0.014 32.6 23.9 89 386-481 1546-1634(1758)
165 TIGR01005 eps_transp_fam exopo 52.8 4.5E+02 0.0097 31.0 21.4 11 397-407 202-212 (754)
166 PF14197 Cep57_CLD_2: Centroso 52.0 1.5E+02 0.0033 25.3 9.4 51 486-536 14-64 (69)
167 PF11365 DUF3166: Protein of u 51.6 1.6E+02 0.0034 27.0 9.5 26 509-534 66-91 (96)
168 KOG4403 Cell surface glycoprot 50.8 2.5E+02 0.0053 32.2 12.6 37 497-533 346-382 (575)
169 PF12777 MT: Microtubule-bindi 50.3 61 0.0013 34.8 7.9 72 386-457 218-289 (344)
170 PF09755 DUF2046: Uncharacteri 49.2 3.9E+02 0.0084 29.2 20.1 17 446-462 85-101 (310)
171 PF09789 DUF2353: Uncharacteri 48.6 4E+02 0.0086 29.1 15.6 149 386-535 13-177 (319)
172 PF03980 Nnf1: Nnf1 ; InterPr 48.3 1.8E+02 0.0039 26.0 9.4 27 192-218 83-109 (109)
173 PF05278 PEARLI-4: Arabidopsis 47.7 3.8E+02 0.0083 28.7 13.3 41 496-536 219-259 (269)
174 PRK10929 putative mechanosensi 46.7 7.2E+02 0.016 31.6 17.6 13 437-449 108-120 (1109)
175 PLN03229 acetyl-coenzyme A car 46.6 6.2E+02 0.014 30.8 20.1 33 526-558 695-730 (762)
176 PF05546 She9_MDM33: She9 / Md 45.8 2.8E+02 0.006 28.7 11.2 45 405-449 34-78 (207)
177 PF08172 CASP_C: CASP C termin 45.6 2.8E+02 0.0061 29.0 11.6 33 392-424 2-34 (248)
178 PF12709 Kinetocho_Slk19: Cent 44.9 2.4E+02 0.0052 25.5 10.8 36 510-545 47-82 (87)
179 KOG4787 Uncharacterized conser 44.9 6.2E+02 0.013 30.3 19.3 78 387-468 330-409 (852)
180 KOG0979 Structural maintenance 44.2 7.6E+02 0.016 31.2 19.0 58 496-560 260-317 (1072)
181 COG2433 Uncharacterized conser 44.1 4.5E+02 0.0097 31.3 13.7 21 136-161 153-173 (652)
182 PF10168 Nup88: Nuclear pore c 43.5 5.4E+02 0.012 31.0 14.8 29 399-427 561-589 (717)
183 PRK02119 hypothetical protein; 43.1 1.6E+02 0.0036 25.2 7.9 55 390-444 3-57 (73)
184 PF11932 DUF3450: Protein of u 42.5 3.9E+02 0.0084 27.3 13.0 73 397-469 43-115 (251)
185 PF13870 DUF4201: Domain of un 42.2 3.3E+02 0.0071 26.3 19.5 30 506-535 146-175 (177)
186 COG4372 Uncharacterized protei 42.0 5.7E+02 0.012 29.1 18.5 108 413-531 77-184 (499)
187 PF05266 DUF724: Protein of un 40.7 4E+02 0.0086 26.8 12.7 32 427-458 127-158 (190)
188 TIGR02231 conserved hypothetic 39.8 1.8E+02 0.0039 32.8 9.8 17 515-531 148-164 (525)
189 COG0419 SbcC ATPase involved i 39.7 7.8E+02 0.017 30.0 25.8 178 386-564 229-427 (908)
190 TIGR02977 phageshock_pspA phag 39.3 4.2E+02 0.009 26.7 17.7 68 498-565 106-184 (219)
191 PF15254 CCDC14: Coiled-coil d 38.9 3.7E+02 0.0079 32.9 12.3 100 105-220 437-539 (861)
192 PF12795 MscS_porin: Mechanose 38.9 4.3E+02 0.0094 26.8 20.5 57 503-559 155-211 (240)
193 PF04880 NUDE_C: NUDE protein, 38.8 41 0.0009 33.3 4.2 49 514-566 2-50 (166)
194 PF06785 UPF0242: Uncharacteri 38.7 2.7E+02 0.006 30.9 10.4 96 394-489 125-224 (401)
195 TIGR01000 bacteriocin_acc bact 38.3 5.9E+02 0.013 28.2 22.6 31 385-415 93-123 (457)
196 PF10205 KLRAQ: Predicted coil 38.2 3.3E+02 0.0072 25.3 10.0 62 422-483 10-71 (102)
197 PF10304 DUF2411: Domain of un 38.1 26 0.00056 26.3 2.1 23 75-97 14-36 (36)
198 PF07106 TBPIP: Tat binding pr 37.9 1.5E+02 0.0033 28.4 7.8 34 386-419 76-109 (169)
199 COG3883 Uncharacterized protei 37.7 5.4E+02 0.012 27.5 21.1 16 393-408 42-57 (265)
200 PF06818 Fez1: Fez1; InterPro 37.4 4.8E+02 0.01 26.9 19.1 159 390-556 11-182 (202)
201 PF05010 TACC: Transforming ac 37.3 4.7E+02 0.01 26.8 23.1 56 497-552 142-201 (207)
202 KOG0978 E3 ubiquitin ligase in 36.7 8.4E+02 0.018 29.5 23.7 54 506-559 567-620 (698)
203 COG3883 Uncharacterized protei 36.1 5.7E+02 0.012 27.4 21.9 53 387-439 50-102 (265)
204 PF10146 zf-C4H2: Zinc finger- 34.5 5.5E+02 0.012 26.7 14.6 47 438-484 32-78 (230)
205 KOG0996 Structural maintenance 33.6 1.2E+03 0.025 30.2 45.4 32 193-224 483-514 (1293)
206 PF04012 PspA_IM30: PspA/IM30 33.4 4.9E+02 0.011 25.8 17.1 125 436-567 28-153 (221)
207 PF14193 DUF4315: Domain of un 33.3 81 0.0017 28.0 4.6 32 386-417 5-36 (83)
208 TIGR01010 BexC_CtrB_KpsE polys 33.2 6.3E+02 0.014 27.0 13.2 32 415-446 168-199 (362)
209 PF15035 Rootletin: Ciliary ro 32.9 5.1E+02 0.011 25.9 15.1 84 398-481 18-124 (182)
210 PF03962 Mnd1: Mnd1 family; I 32.5 2E+02 0.0044 28.6 7.9 61 504-564 61-127 (188)
211 PF04102 SlyX: SlyX; InterPro 32.3 2.3E+02 0.0049 23.8 7.0 50 395-444 3-52 (69)
212 PF12808 Mto2_bdg: Micro-tubul 31.9 1.4E+02 0.003 24.5 5.4 46 170-216 4-49 (52)
213 COG3599 DivIVA Cell division i 31.8 5.9E+02 0.013 26.2 14.7 128 134-265 15-147 (212)
214 PF10805 DUF2730: Protein of u 31.0 3.9E+02 0.0085 24.2 8.8 27 389-415 35-61 (106)
215 COG1842 PspA Phage shock prote 30.8 6.2E+02 0.013 26.2 19.1 164 387-556 29-220 (225)
216 PF05483 SCP-1: Synaptonemal c 30.6 1.1E+03 0.023 28.8 24.1 64 497-560 586-649 (786)
217 TIGR01005 eps_transp_fam exopo 30.5 9.6E+02 0.021 28.3 23.0 29 394-422 192-220 (754)
218 PF07889 DUF1664: Protein of u 30.2 4.9E+02 0.011 24.8 12.1 79 440-532 45-123 (126)
219 PF04201 TPD52: Tumour protein 30.2 1.2E+02 0.0026 30.1 5.7 42 408-449 27-68 (162)
220 PF03148 Tektin: Tektin family 30.1 7.7E+02 0.017 27.1 25.8 110 427-536 247-362 (384)
221 PF15294 Leu_zip: Leucine zipp 30.0 7.3E+02 0.016 26.7 14.8 75 468-560 192-266 (278)
222 PF15397 DUF4618: Domain of un 29.9 7E+02 0.015 26.5 22.0 120 397-521 39-165 (258)
223 PRK10636 putative ABC transpor 29.7 2.6E+02 0.0056 32.6 9.2 71 391-462 558-629 (638)
224 KOG0962 DNA repair protein RAD 29.6 1.4E+03 0.03 29.8 17.0 131 405-535 211-348 (1294)
225 PF14257 DUF4349: Domain of un 29.5 2.4E+02 0.0053 28.8 8.1 63 395-462 131-193 (262)
226 PRK04325 hypothetical protein; 29.3 3.5E+02 0.0077 23.2 7.8 51 394-444 7-57 (74)
227 PF10186 Atg14: UV radiation r 29.0 6.1E+02 0.013 25.6 16.7 121 132-264 25-145 (302)
228 PRK04406 hypothetical protein; 28.9 3.8E+02 0.0083 23.2 8.1 50 393-442 8-57 (75)
229 TIGR03017 EpsF chain length de 28.6 7.9E+02 0.017 26.7 17.5 27 528-554 344-370 (444)
230 TIGR02680 conserved hypothetic 28.6 1.4E+03 0.03 29.5 25.7 24 247-270 560-583 (1353)
231 TIGR02231 conserved hypothetic 28.5 4.9E+02 0.011 29.4 11.0 16 397-412 72-87 (525)
232 KOG1962 B-cell receptor-associ 28.3 3.7E+02 0.008 27.9 9.0 50 408-457 149-198 (216)
233 PF13514 AAA_27: AAA domain 28.3 1.3E+03 0.027 29.0 20.3 171 390-564 737-913 (1111)
234 COG1340 Uncharacterized archae 28.2 8.1E+02 0.017 26.7 22.0 82 388-469 19-100 (294)
235 PRK00846 hypothetical protein; 28.0 4.1E+02 0.0088 23.4 8.0 54 392-445 9-62 (77)
236 KOG3650 Predicted coiled-coil 27.8 1.4E+02 0.0031 27.8 5.4 41 165-217 58-98 (120)
237 PF08581 Tup_N: Tup N-terminal 27.6 4.3E+02 0.0092 23.3 9.7 51 504-564 24-74 (79)
238 PF11365 DUF3166: Protein of u 27.5 1.7E+02 0.0037 26.8 5.8 38 509-560 5-42 (96)
239 PF09738 DUF2051: Double stran 27.4 3.5E+02 0.0077 29.2 9.1 61 387-447 103-163 (302)
240 PF03670 UPF0184: Uncharacteri 27.4 1.6E+02 0.0035 26.4 5.5 49 101-149 25-73 (83)
241 PRK13729 conjugal transfer pil 27.3 1.9E+02 0.004 33.2 7.3 17 430-446 103-119 (475)
242 PRK02793 phi X174 lysis protei 27.2 4E+02 0.0086 22.8 7.8 50 394-443 6-55 (72)
243 PF15397 DUF4618: Domain of un 27.0 7.9E+02 0.017 26.2 19.9 24 439-462 121-144 (258)
244 PF02403 Seryl_tRNA_N: Seryl-t 26.6 4.5E+02 0.0097 23.2 8.4 29 496-524 72-100 (108)
245 KOG1265 Phospholipase C [Lipid 26.6 1.4E+03 0.03 28.9 17.4 100 51-157 1020-1137(1189)
246 PRK00736 hypothetical protein; 26.5 3.8E+02 0.0082 22.7 7.4 48 396-443 5-52 (68)
247 KOG1655 Protein involved in va 26.1 75 0.0016 32.6 3.6 30 240-269 27-57 (218)
248 PF10498 IFT57: Intra-flagella 26.0 9.2E+02 0.02 26.6 14.8 45 385-429 216-260 (359)
249 PRK00295 hypothetical protein; 25.8 4.1E+02 0.0089 22.5 8.0 50 395-444 4-53 (68)
250 TIGR02894 DNA_bind_RsfA transc 25.8 3.4E+02 0.0073 27.1 7.9 50 385-434 100-149 (161)
251 PF07106 TBPIP: Tat binding pr 25.6 3.8E+02 0.0083 25.7 8.3 39 388-426 71-109 (169)
252 COG5185 HEC1 Protein involved 25.4 1.1E+03 0.025 27.5 21.0 103 434-536 298-406 (622)
253 PF05308 Mito_fiss_reg: Mitoch 25.2 64 0.0014 33.8 3.1 29 238-266 115-143 (253)
254 PF10224 DUF2205: Predicted co 25.2 2.4E+02 0.0051 25.0 6.1 42 165-218 18-59 (80)
255 PRK11281 hypothetical protein; 25.1 1.5E+03 0.033 28.8 21.6 18 534-551 283-300 (1113)
256 PF02050 FliJ: Flagellar FliJ 25.0 4.3E+02 0.0092 22.4 12.0 66 389-454 5-75 (123)
257 TIGR03185 DNA_S_dndD DNA sulfu 24.9 1.2E+03 0.025 27.4 19.5 21 245-265 269-289 (650)
258 COG1382 GimC Prefoldin, chaper 24.8 6.1E+02 0.013 24.1 12.7 28 509-536 74-101 (119)
259 PF10779 XhlA: Haemolysin XhlA 24.7 3.9E+02 0.0084 22.5 7.2 44 393-436 3-46 (71)
260 TIGR03017 EpsF chain length de 24.4 9.3E+02 0.02 26.1 21.3 20 401-420 176-195 (444)
261 PF01920 Prefoldin_2: Prefoldi 24.3 4.6E+02 0.0099 22.5 9.9 27 510-536 67-93 (106)
262 PF07716 bZIP_2: Basic region 24.2 1.2E+02 0.0026 24.1 3.8 27 192-218 28-54 (54)
263 PF06005 DUF904: Protein of un 24.0 4.7E+02 0.01 22.5 7.9 54 514-573 6-59 (72)
264 KOG0250 DNA repair protein RAD 23.9 1.6E+03 0.034 28.6 46.9 65 104-168 276-346 (1074)
265 KOG4809 Rab6 GTPase-interactin 23.7 1.3E+03 0.028 27.5 15.6 41 135-175 110-150 (654)
266 KOG0249 LAR-interacting protei 23.6 1.4E+03 0.031 28.1 17.0 19 440-458 165-183 (916)
267 PRK10698 phage shock protein P 23.5 8E+02 0.017 25.0 19.7 22 543-564 162-183 (222)
268 COG1382 GimC Prefoldin, chaper 23.4 6.5E+02 0.014 23.9 10.2 34 103-136 14-47 (119)
269 PRK10698 phage shock protein P 23.0 8.2E+02 0.018 25.0 21.9 10 551-560 205-214 (222)
270 PF15294 Leu_zip: Leucine zipp 22.9 9.7E+02 0.021 25.8 14.7 64 386-449 136-208 (278)
271 PRK06569 F0F1 ATP synthase sub 22.6 7.5E+02 0.016 24.4 15.0 30 477-506 107-136 (155)
272 KOG1899 LAR transmembrane tyro 22.6 1.4E+03 0.031 27.7 14.9 152 399-571 107-262 (861)
273 PRK15178 Vi polysaccharide exp 22.6 1.2E+03 0.026 26.7 12.8 28 419-446 244-271 (434)
274 COG3096 MukB Uncharacterized p 22.2 1.6E+03 0.035 28.1 18.3 179 386-584 446-675 (1480)
275 PF08232 Striatin: Striatin fa 22.1 2.1E+02 0.0046 27.0 5.7 18 523-540 50-67 (134)
276 TIGR00998 8a0101 efflux pump m 22.0 8.9E+02 0.019 25.0 14.0 109 427-536 76-203 (334)
277 COG2433 Uncharacterized conser 21.9 1.3E+03 0.028 27.8 12.6 48 389-436 415-462 (652)
278 KOG0946 ER-Golgi vesicle-tethe 21.7 1.6E+03 0.035 28.0 17.8 25 81-105 332-356 (970)
279 KOG0239 Kinesin (KAR3 subfamil 21.4 1.5E+03 0.032 27.3 17.0 23 345-367 116-138 (670)
280 KOG1962 B-cell receptor-associ 21.4 9.4E+02 0.02 25.1 11.4 17 345-361 56-72 (216)
281 PF03179 V-ATPase_G: Vacuolar 21.4 5.8E+02 0.012 22.6 10.1 56 125-180 6-61 (105)
282 PF14197 Cep57_CLD_2: Centroso 21.3 5.2E+02 0.011 22.1 9.5 20 409-428 4-23 (69)
283 smart00502 BBC B-Box C-termina 21.0 5.4E+02 0.012 22.2 15.5 32 505-536 72-103 (127)
284 KOG4360 Uncharacterized coiled 20.8 1.4E+03 0.031 26.9 16.9 47 481-527 258-304 (596)
285 TIGR01069 mutS2 MutS2 family p 20.7 1.5E+03 0.034 27.3 14.6 65 104-171 87-158 (771)
286 PF00170 bZIP_1: bZIP transcri 20.3 4.7E+02 0.01 21.2 8.1 46 489-534 17-62 (64)
287 PF13870 DUF4201: Domain of un 20.2 7.9E+02 0.017 23.7 17.3 82 470-551 53-137 (177)
288 PF05600 DUF773: Protein of un 20.1 1E+03 0.022 27.4 11.5 49 58-110 30-78 (507)
No 1
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=100.00 E-value=9.2e-115 Score=969.83 Aligned_cols=467 Identities=52% Similarity=0.672 Sum_probs=400.9
Q ss_pred chHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 007664 79 KEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQN 158 (594)
Q Consensus 79 Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks 158 (594)
||||||||+|||||||+||||||+||++||+|||+++++++++||||+||||||||||||||+|||||||+|||||+++|
T Consensus 1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s 80 (769)
T PF05911_consen 1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS 80 (769)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhh-----------------------HHHHHHHHHHHHhhhhhhHHHHHH
Q 007664 159 LEWESKKSELESKLVDLQKKLQTAKSEAAASAD-----------------------RDLCSKLEAAEKQNSALKLELLSL 215 (594)
Q Consensus 159 ~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~-----------------------~~L~~rLes~EKen~sLkyE~~~l 215 (594)
+||++++.+||.+|.++.++|..++++|+++.+ .+|++||+++||||++|||||||+
T Consensus 81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987654 589999999999999999999999
Q ss_pred HhhhhHhHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhhcCCCCC------------------C---CCCC
Q 007664 216 VKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTE------------------N---KSFT 274 (594)
Q Consensus 216 ~kELeiR~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK~lp~~d------------------~---rs~~ 274 (594)
+|||+|||+|||||+||||+|||||||||||||||||||||||+||||+||||. + |+.+
T Consensus 161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~ 240 (769)
T PF05911_consen 161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS 240 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999982 1 2222
Q ss_pred C-Ccccc---cCCCCCCC---chhhhhhccccccc-------------------------cc------------------
Q 007664 275 P-SSIYV---GSFTDSQS---DNGERLLGNETDNC-------------------------KI------------------ 304 (594)
Q Consensus 275 ~-~s~~~---~s~~d~~s---d~~erl~~~E~e~~-------------------------kl------------------ 304 (594)
+ ++++. .+++.++. .+++||++||+||+ ||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~ 320 (769)
T PF05911_consen 241 RPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELS 320 (769)
T ss_pred cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 2 22221 22222222 25999999999983 11
Q ss_pred ------------Cc-cccccCCCCCcchhhhhccCCCc--ccccccCCCC--CCCccccccchhHHHHHHhhcCCCCCCC
Q 007664 305 ------------SD-SEVNECEPNSSTSWASALAIEPD--KNVKAVGRNV--MVPSVDINLMDDFLEMERLAALPDTESR 367 (594)
Q Consensus 305 ------------s~-~~~~~~~~scs~SWAsALisEld--k~~k~~~~~~--~~~s~di~LMDDFlEMEkLA~l~~~~~~ 367 (594)
|. .+++||++||||||||||||||| |++|+++++. +.+++||+||||||||||||+||.++++
T Consensus 321 ~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~ 400 (769)
T PF05911_consen 321 SSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSS 400 (769)
T ss_pred cccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCC
Confidence 12 23579999999999999999999 7788766654 6667899999999999999999976655
Q ss_pred CccccCC-CCCCCCC-----------Cc----------------------------------------------------
Q 007664 368 SFCVEVG-PASDQPN-----------AD---------------------------------------------------- 383 (594)
Q Consensus 368 ~~~~~~~-~~sd~~~-----------~~---------------------------------------------------- 383 (594)
+++.... .+.+..+ ..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~ 480 (769)
T PF05911_consen 401 PSSCSSSEVDSDSSVTLESSSKRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNCDDDS 480 (769)
T ss_pred CCCCCCccccccccccccccccccccccchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccccccccc
Confidence 4443221 1111100 00
Q ss_pred -c-----c----------------------------chHHH---------------------------------------
Q 007664 384 -E-----S----------------------------SIKAE--------------------------------------- 390 (594)
Q Consensus 384 -~-----~----------------------------~l~~E--------------------------------------- 390 (594)
. . .|..+
T Consensus 481 ~~~~~~~~sL~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~ 560 (769)
T PF05911_consen 481 EEYESMEASLVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVS 560 (769)
T ss_pred chhhhhhhhHHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 0 0 00000
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 391 -----------------------LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447 (594)
Q Consensus 391 -----------------------lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL 447 (594)
.+........+++++++++++|.++++.|..|+.+++.++.+|+++++++.+||++
T Consensus 561 s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e- 639 (769)
T PF05911_consen 561 SMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE- 639 (769)
T ss_pred HHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 11122255677889999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007664 448 AFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK 527 (594)
Q Consensus 448 ~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~K 527 (594)
|.++++|+++++++|+|+...++.+++|+..+++|+..|+.|
T Consensus 640 --------------------------------------L~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~K 681 (769)
T PF05911_consen 640 --------------------------------------LESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSK 681 (769)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHHHHHHHhhhhcCccccchhhhcccccc
Q 007664 528 VISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQVSGLSFM 592 (594)
Q Consensus 528 V~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~~e~~~~~~~~s~~elKiKQEkELa~~ 592 (594)
|.+||.+|++||++|.++.+||++||++|+|++. +...++.+ +.++|++||+|||+.
T Consensus 682 i~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~------~~~~~~~~--~~~~k~kqe~EiaaA 738 (769)
T PF05911_consen 682 ISSLEEELEKERALSEELEAKCRELEEELERMKK------EESLQQLA--NEDKKIKQEKEIAAA 738 (769)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc------ccchhhcc--ccccccchHHHHHHH
Confidence 9999999999999999999999999999999984 34444434 999999999999874
No 2
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.24 E-value=0.032 Score=67.66 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=53.1
Q ss_pred hhHhhHhHHHHHHHhhcccchHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhh-------hhhhhhhhhchhhHH
Q 007664 60 DSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK-------NSALENRVSHLDGAL 132 (594)
Q Consensus 60 ~~~k~LnekLs~al~~~~~Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~-------~~~~e~rv~hLD~AL 132 (594)
..++.++.+|...-.+++.-...+..+..--.++-..++..+.++..+...+...... ...++..+.++..-+
T Consensus 232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777778877777777777777777777777778888887777777777766222 223444555555555
Q ss_pred HHHHHHH
Q 007664 133 KECVRQL 139 (594)
Q Consensus 133 KeCmrQL 139 (594)
+.+..++
T Consensus 312 ~~~~~~~ 318 (1163)
T COG1196 312 EELENEL 318 (1163)
T ss_pred HHHHHHH
Confidence 5554443
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.22 E-value=0.026 Score=66.05 Aligned_cols=75 Identities=25% Similarity=0.381 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM 461 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~v 461 (594)
+..+++.+..++..++..+..+..+...++..+..++.++...+..+..++..+..++.++.........++.++
T Consensus 675 l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 749 (1179)
T TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555444444444444444444444444444444444444444444333333333333333
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.14 E-value=0.04 Score=64.96 Aligned_cols=52 Identities=29% Similarity=0.418 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL 440 (594)
.++..+..++..++..+..+..+...++..+..++..+......+..+...+
T Consensus 674 ~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l 725 (1164)
T TIGR02169 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555554444444444444444433333333333333
No 5
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.80 E-value=0.0078 Score=60.63 Aligned_cols=57 Identities=32% Similarity=0.517 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHh
Q 007664 494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELS 557 (594)
Q Consensus 494 s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLs 557 (594)
..++..+..+...+++++.+...++..+..|...|..|+.+|..++. ++..+..+|-
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~-------~~~~~~~eld 228 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKE-------KYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 46777888889999999999999999999999999999999986654 4555555543
No 6
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.74 E-value=0.0049 Score=62.05 Aligned_cols=35 Identities=34% Similarity=0.601 Sum_probs=15.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLE 532 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE 532 (594)
..|..+......+++++..++.++..+...+.+||
T Consensus 127 ~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE 161 (237)
T PF00261_consen 127 QELERAEERAEAAESKIKELEEELKSVGNNLKSLE 161 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhh
Confidence 33333444444444444444444444444444444
No 7
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.73 E-value=0.18 Score=58.85 Aligned_cols=166 Identities=24% Similarity=0.300 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-------------
Q 007664 395 IHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM------------- 461 (594)
Q Consensus 395 ~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~v------------- 461 (594)
...|..|+..|..++.||..|-..|.++|.+|+.++..|.+-..++..|-.+++....-....+...
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d 343 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED 343 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence 4589999999999999999999999999999999999999999999999999998766211111110
Q ss_pred -----------HHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664 462 -----------KAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVIS 530 (594)
Q Consensus 462 -----------e~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~s 530 (594)
+-.+.+...+...+.-+..|++.+...-+.....+..+.....++...+..++..++...+.-..+|..
T Consensus 344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~ 423 (717)
T PF09730_consen 344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISE 423 (717)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 111122222223333344455544444444444555566666777778888888888877777888999
Q ss_pred hHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 531 LEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 531 LE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
||.++..=+.+..+....+.--.++|.-..
T Consensus 424 LE~ELr~l~~~A~E~q~~LnsAQDELvtfS 453 (717)
T PF09730_consen 424 LEKELRALSKLAGESQGSLNSAQDELVTFS 453 (717)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999998888888888888876
No 8
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=97.46 E-value=0.43 Score=56.28 Aligned_cols=153 Identities=27% Similarity=0.339 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
.+..+++.+......|+..+.+.......+...|.+....++..+.+|.-+..--..+..||.....++..++.++..++
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e 672 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE 672 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45667788887777777766666666666666677777777777777776666666778888889999999999999999
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHH
Q 007664 466 AARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN 545 (594)
Q Consensus 466 ~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~ 545 (594)
++..++-.+++.++.||.+......+.. ++...++-+|.....+....... .=+-.+.+|+.++.-.
T Consensus 673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~-----------~kc~~Le~el~r~~~~~~~~~~~--~~~~k~kqe~EiaaAA 739 (769)
T PF05911_consen 673 AEAEELQSKISSLEEELEKERALSEELE-----------AKCRELEEELERMKKEESLQQLA--NEDKKIKQEKEIAAAA 739 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhhh-----------hHHHHHHHHHHhhhcccchhhcc--ccccccchHHHHHHHH
Confidence 9999999999999999886655544332 33444555555554443222111 2333455555555433
Q ss_pred --HHHhHH
Q 007664 546 --IANFQK 551 (594)
Q Consensus 546 --~aKC~~ 551 (594)
.|-|++
T Consensus 740 ~KLAECQe 747 (769)
T PF05911_consen 740 EKLAECQE 747 (769)
T ss_pred HHHHHHHH
Confidence 666664
No 9
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.15 E-value=0.085 Score=50.04 Aligned_cols=135 Identities=22% Similarity=0.379 Sum_probs=96.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
++++|.+.++.+...++.++..++.+...++..+.-.+..+.....+|..++..+.+++..++........++
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E------- 76 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE------- 76 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-------
Confidence 5788999999999999999999998888888888777777777777777777777776666555444332221
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHH
Q 007664 466 AARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN 545 (594)
Q Consensus 466 ~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~ 545 (594)
.|.++|.++ +++|+.+....+....+|..+..-+..+..+|..||.+.. ..
T Consensus 77 ----~l~rriq~L------------------Eeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~-------~~ 127 (143)
T PF12718_consen 77 ----QLNRRIQLL------------------EEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERD-------QW 127 (143)
T ss_pred ----HHHhhHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHH-------HH
Confidence 334444444 4555566666777778888888888888888888888744 66
Q ss_pred HHHhHHHHHHH
Q 007664 546 IANFQKSKDEL 556 (594)
Q Consensus 546 ~aKC~~LEeeL 556 (594)
..||..|+.++
T Consensus 128 E~k~eel~~k~ 138 (143)
T PF12718_consen 128 EEKYEELEEKY 138 (143)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 10
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.15 E-value=0.11 Score=65.97 Aligned_cols=180 Identities=22% Similarity=0.288 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA 466 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~ 466 (594)
....+..+...+..+++.+.++-.++..+|-++..++..+......+..+......|..+|+........-+..-...+.
T Consensus 962 ~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek 1041 (1930)
T KOG0161|consen 962 AENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEK 1041 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777777777777777777776666666666555555555555544433332222222223333
Q ss_pred hhhhhhhhhhhHHHHHHH---HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcH
Q 007664 467 ARGVAESKLSVVEAEMKT---QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE 543 (594)
Q Consensus 467 ~~~~lEskl~~~eaEik~---~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~ 543 (594)
....+++.+..++..|.. .-.--.....-.+.++..+.++.......+..++..+..|...|.-|+++++.||+.=.
T Consensus 1042 ~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~ 1121 (1930)
T KOG0161|consen 1042 AKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA 1121 (1930)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455544333332221 11111112223455666667777777777777888888888999999999999999999
Q ss_pred HHHHHhHHHHHHHhhhhHHHHHH
Q 007664 544 ENIANFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 544 E~~aKC~~LEeeLsr~k~e~e~~ 566 (594)
.+..+.++|..++.-...+++-+
T Consensus 1122 K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1122 KAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998777766
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.12 E-value=1.6 Score=56.00 Aligned_cols=179 Identities=23% Similarity=0.304 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
.++.=+..+....++++..+.++..-..+++..+..++...+....++.+++.++.-|++.+..... .+..+.
T Consensus 1615 elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~-------~l~~~~ 1687 (1930)
T KOG0161|consen 1615 ELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELRE-------KLEALE 1687 (1930)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4566666666677777777777766666666666666666555555555555555554444333333 333333
Q ss_pred HhhhhhhhhhhhHHHHHHHHH---HHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 007664 466 AARGVAESKLSVVEAEMKTQL---ALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALS 542 (594)
Q Consensus 466 ~~~~~lEskl~~~eaEik~~L---~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS 542 (594)
..+..+|+.+.-+-..|.... .+...-+.-.+.++..+++...+--+.++.+...+++...-..-+-.++..||.-+
T Consensus 1688 Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~ 1767 (1930)
T KOG0161|consen 1688 RARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETS 1767 (1930)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333444443333333333211 11112234455666667777777778888888888888888888888898888766
Q ss_pred HHHHHHhHHHHHHHhhhhHHHHHH-HHHHHhhhh
Q 007664 543 EENIANFQKSKDELSKVKQEIELQ-HEVKLQYLA 575 (594)
Q Consensus 543 ~E~~aKC~~LEeeLsr~k~e~e~~-~e~~~~~~~ 575 (594)
..+..--..||.+ ..+++++ +|+.....+
T Consensus 1768 ~~le~~k~~LE~~----~kdLq~rL~e~E~~a~~ 1797 (1930)
T KOG0161|consen 1768 QKLERLKKSLERQ----VKDLQLRLDEAEQAALK 1797 (1930)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHhhhh
Confidence 5554444444443 3345555 666654444
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.88 E-value=1.6 Score=51.87 Aligned_cols=64 Identities=22% Similarity=0.388 Sum_probs=34.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~ 449 (594)
.+..+++.+..++..++..+..++.+...++..+..+...+.....++..++..+..+..++..
T Consensus 678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~ 741 (1164)
T TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666655555555555555555554444444444444444444444333
No 13
>PRK11637 AmiB activator; Provisional
Probab=96.68 E-value=1.3 Score=48.19 Aligned_cols=76 Identities=18% Similarity=0.295 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
+..++.....++..++.++..+..+..+++..+.....++......+..++..+..++.+++..+..+..++.++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655555555555555555555555555555555544444444444444444444444444444433
No 14
>PRK11637 AmiB activator; Provisional
Probab=96.49 E-value=0.78 Score=49.91 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=59.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 384 ~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
-..++.++.....++..++.++..++.+...++..+...+.++.....++..++.++..++.++.............+.
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777888888888888888888888888888888888888888888888888888888877776666655555554
No 15
>PRK02224 chromosome segregation protein; Provisional
Probab=96.44 E-value=2.9 Score=49.16 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 506 KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 506 ~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
.+..++.....+..++..++..|..|+..+..++. ..+..++..++..+....
T Consensus 614 ~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~--e~l~~~~~~~~~~~~~l~ 666 (880)
T PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFDEARI--EEAREDKERAEEYLEQVE 666 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33333333344455555556666655554444432 234444444555444443
No 16
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.35 E-value=0.66 Score=44.10 Aligned_cols=7 Identities=0% Similarity=0.098 Sum_probs=2.7
Q ss_pred HhHHHHH
Q 007664 548 NFQKSKD 554 (594)
Q Consensus 548 KC~~LEe 554 (594)
++..||.
T Consensus 116 kv~~le~ 122 (143)
T PF12718_consen 116 KVKALEQ 122 (143)
T ss_pred HHHHHHh
Confidence 3333433
No 17
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.33 E-value=1.6 Score=45.04 Aligned_cols=180 Identities=24% Similarity=0.353 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA 466 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~ 466 (594)
...++..++.++..+-..-.+++.+.+.+...+...+.+++........++..+..|+..++.+.-....+++++.....
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e 131 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE 131 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 44455555555555555445555555555555555555555555555555555555555555555555555555443333
Q ss_pred hh-----------hhhhhhhh-hHH---------------HHHHHHHHHH-----HhhHHHHH--------------HHH
Q 007664 467 AR-----------GVAESKLS-VVE---------------AEMKTQLALA-----NKSKQAAE--------------EEV 500 (594)
Q Consensus 467 ~~-----------~~lEskl~-~~e---------------aEik~~L~la-----~eS~s~~~--------------eeL 500 (594)
+. ..|..++. ..- .+|..+.+.. .+....|. ..+
T Consensus 132 El~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~ 211 (312)
T PF00038_consen 132 ELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEEL 211 (312)
T ss_dssp HHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhccccccccccccccccccc
Confidence 22 23333331 000 1222121110 01112222 233
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHhhc---HHHHHHhHHHHHHHhhhhHHHHHH
Q 007664 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK-ERALS---EENIANFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 501 ~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek-ERalS---~E~~aKC~~LEeeLsr~k~e~e~~ 566 (594)
.....+...+..++..+.+++..|..+...|+..|.. +..+. ..+...+..||.+|.....++.-+
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 3345555556666666666666666666666666532 11111 234555667777777766555444
No 18
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.30 E-value=3.5 Score=48.74 Aligned_cols=80 Identities=26% Similarity=0.336 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~ 468 (594)
.++..+..++..++..+..+......++..+..++.++.....++..++..+..++.++..+......+..++.......
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 749 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555544444444333
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.20 E-value=1.8 Score=48.89 Aligned_cols=134 Identities=28% Similarity=0.378 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH----H---HHhhHHHH
Q 007664 424 RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLA----L---ANKSKQAA 496 (594)
Q Consensus 424 ~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~----l---a~eS~s~~ 496 (594)
.........|.+++.++..|..++ .....++.++..+- ..+..+++|++.... . .+......
T Consensus 211 ~~~~~~~~~leeae~~l~~L~~e~----~~~k~Le~kL~~a~-------~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~ 279 (522)
T PF05701_consen 211 QDAEEWEKELEEAEEELEELKEEL----EAAKDLESKLAEAS-------AELESLQAELEAAKESKLEEEAEAKEKSSEL 279 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhHHhhhhhhhH
Confidence 333445555677777777777775 33333444444433 333334444432222 1 22223344
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHH-------HhHHHHHHHhhhhHHHHHHHH
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIA-------NFQKSKDELSKVKQEIELQHE 568 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~a-------KC~~LEeeLsr~k~e~e~~~e 568 (594)
...|..+..+...+...|..+..|+..|+..|.+|..+|+++|.--..+.. .+..|+.+|.+...+++..+.
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~ 358 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKA 358 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHh
Confidence 455888899999999999999999999999999999999999988766554 466788888888877766533
No 20
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=96.18 E-value=6.4 Score=50.52 Aligned_cols=460 Identities=22% Similarity=0.248 Sum_probs=228.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHH------HHHHHHH
Q 007664 81 DLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQE------QRIQETV 154 (594)
Q Consensus 81 ~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqE------qki~eav 154 (594)
.+=.+|..+.++==.--.-...+...+-.+.+...+++--+.-+|.-+++-|+.|-.+.-+-.++=+ .+|-|..
T Consensus 210 ~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ 289 (1822)
T KOG4674|consen 210 SLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELW 289 (1822)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444555666677777777778888888888888889999999887654433221 3555666
Q ss_pred HHHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhh-------------------------------------------
Q 007664 155 SKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASAD------------------------------------------- 191 (594)
Q Consensus 155 ~kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~------------------------------------------- 191 (594)
..++.+|..--.+|...|.++.+-|.++...++...+
T Consensus 290 ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~ 369 (1822)
T KOG4674|consen 290 KSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMV 369 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchh
Confidence 6666666655556666666665555544332221000
Q ss_pred -----------------HHHHHHHHHHHHhhhhhhHHHHHHH--------------hhhhHhHHhhhhhhhHHHHHhHHh
Q 007664 192 -----------------RDLCSKLEAAEKQNSALKLELLSLV--------------KELELRIVERDLSTKAAETASKQH 240 (594)
Q Consensus 192 -----------------~~L~~rLes~EKen~sLkyE~~~l~--------------kELeiR~~Ere~s~~aae~a~KQh 240 (594)
.++......+.-++.+++.|+--++ =.|+=-..+-+-...+.-.-+..|
T Consensus 370 s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el 449 (1822)
T KOG4674|consen 370 SEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEEL 449 (1822)
T ss_pred hhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0222233333333333333333322 222222333333344455567889
Q ss_pred HHhHHHHHHHHHHHHHHHHHHhhcCCCC--------C-----------------CCCCCCCcccccCCCCCCCchhhhhh
Q 007664 241 LESIKKLAKVEAECLRLKAVVRKASPNT--------E-----------------NKSFTPSSIYVGSFTDSQSDNGERLL 295 (594)
Q Consensus 241 lEsvKKiakLEaECqRLr~l~rK~lp~~--------d-----------------~rs~~~~s~~~~s~~d~~sd~~erl~ 295 (594)
-.+.++|.++|++.++|+...+..---+ | ....+.+++.+...+|++.-+.+||.
T Consensus 450 ~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv 529 (1822)
T KOG4674|consen 450 DFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLV 529 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHH
Confidence 9999999999999999987655432211 0 01112233324444555555677774
Q ss_pred cccccc------cc-----------cCccccc-cCCCC----CcchhhhhccCCCcccccccCCCCCCCccccc-cch--
Q 007664 296 GNETDN------CK-----------ISDSEVN-ECEPN----SSTSWASALAIEPDKNVKAVGRNVMVPSVDIN-LMD-- 350 (594)
Q Consensus 296 ~~E~e~------~k-----------ls~~~~~-~~~~s----cs~SWAsALisEldk~~k~~~~~~~~~s~di~-LMD-- 350 (594)
..=+-+ .. +-..+.. +.... ----=|++=|.+|.+--... ..-|+ |.-
T Consensus 530 ~F~nI~eLqekN~eLL~~vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~-------~~~i~sLl~er 602 (1822)
T KOG4674|consen 530 EFSNINELQEKNVELLNAVRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQ-------EQRIESLLTER 602 (1822)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 432211 00 0000000 00000 00001233333333110000 01111 111
Q ss_pred hHHHHHHhhcCCCCCCCCccccCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007664 351 DFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQ 430 (594)
Q Consensus 351 DFlEMEkLA~l~~~~~~~~~~~~~~~sd~~~~~~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~ 430 (594)
||+- +.||-.-+..+..+++....-.+..+. .-.++-.|++.++....|+.+-.+-|. .++...+
T Consensus 603 d~y~-e~l~~~e~~~~~k~nss~~~~t~~~~~-----------~e~~l~qLe~~le~~~~E~~~~~~~l~---e~~~~l~ 667 (1822)
T KOG4674|consen 603 DMYK-ELLAELEDSHQLKPNSSALDQTEAPRA-----------KEKRLRQLENELESYKKEKRENLKKLQ---EDFDSLQ 667 (1822)
T ss_pred HHHH-HhhhcccccccCCCCchhhcccccchh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 2322 667655444212222222111222111 335677777777777777766665554 5555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----------HHHHHHhhHHHHHHHH
Q 007664 431 NQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT----------QLALANKSKQAAEEEV 500 (594)
Q Consensus 431 ~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~----------~L~la~eS~s~~~eeL 500 (594)
.......-.+..+.++++|+.+....++.-+....+...+|..+-..++.=|-+ +|..++.--.....++
T Consensus 668 ~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev 747 (1822)
T KOG4674|consen 668 KEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAEL 747 (1822)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 555566666777888888887777777777776666666665555544442222 2444444444444455
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH------HHHHHh-----hcHHHHHHhHHHHHHHhhhhHH
Q 007664 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE------VEKERA-----LSEENIANFQKSKDELSKVKQE 562 (594)
Q Consensus 501 ~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E------IekERa-----lS~E~~aKC~~LEeeLsr~k~e 562 (594)
..+..+.+.+-.-...+..|...|+....+|..- +..++- .-..+..+..+|+..|++.+.+
T Consensus 748 ~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k 820 (1822)
T KOG4674|consen 748 SNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK 820 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444444443333333443333333333211 111111 1233445666777777776654
No 21
>PRK09039 hypothetical protein; Validated
Probab=96.16 E-value=0.99 Score=48.40 Aligned_cols=133 Identities=13% Similarity=0.216 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLS 476 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~ 476 (594)
++..++.+|..++++..+ .-.-+..-+.+...++..+.+|+.++..+...+..++.-..........++.++.
T Consensus 47 ~i~~~~~eL~~L~~qIa~-------L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~ 119 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE-------LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG 119 (343)
T ss_pred HHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHH
Confidence 555555555555555544 3344455556666677778888888888777777766655533333345555555
Q ss_pred hHHHHHHHHHHHHHhhH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 477 VVEAEMKTQLALANKSK---QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 477 ~~eaEik~~L~la~eS~---s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
.+.+++..+.....+.. ...-.++.+++.+.-.++..|..++..-.....+|..|+.+|+
T Consensus 120 ~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 120 ELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333333222222 1233344444444444444444444444444444444444443
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.02 E-value=1.7 Score=49.61 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEV 459 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~ 459 (594)
+...++.+.....+|......|+.+...++..+...+..|...+.....+..+..++....+.+...+..+..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~ 213 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKE 213 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566656555555555555555555555555555555444444444444444444444433333333333
No 23
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.89 E-value=1.8 Score=49.45 Aligned_cols=166 Identities=24% Similarity=0.294 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007664 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQR---------------RLETSQNQLKEAELKLEELETQLAFANK 452 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~---------------qle~S~~~L~Eae~kL~ELQ~QL~~aN~ 452 (594)
+.||-.+..+++.-=+|+..||++=..|+..+...+. .+...+.-+.++....++++..+.-+.+
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4588888889999999999999988888888765443 3444444455554455555555444444
Q ss_pred hHHHHHHHHHHH-------HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007664 453 SKQAVEVEMKAA-------IAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLR 525 (594)
Q Consensus 453 sk~~~e~~ve~~-------~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~ 525 (594)
....+..++..+ ..+......+++-+++| +.-....++.|+..+..+..|...|.
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe------------------~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAE------------------INTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhH------------------HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 444333333322 22222333333333333 33446667778999999999999999
Q ss_pred HHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh--HHHHHHHHHHH
Q 007664 526 SKVISLEDEVEKERALSEENIANFQKSKDELSKVK--QEIELQHEVKL 571 (594)
Q Consensus 526 ~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k--~e~e~~~e~~~ 571 (594)
..|..+-.++++|..+-.++..+|+.|-++|.=+. ++.+|-++...
T Consensus 183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~ 230 (546)
T KOG0977|consen 183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999998774 33444444433
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=95.59 E-value=6.7 Score=46.17 Aligned_cols=140 Identities=23% Similarity=0.339 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLS 476 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~ 476 (594)
++...+.+++.+..+..+++..+.......+.....+.++..++.++..+++.++..+..++ .+.++..+...+++.+.
T Consensus 531 ~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~ 609 (880)
T PRK02224 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIE 609 (880)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443344444444444445555555555555444444 34444444433333333
Q ss_pred hHHHHHHHH----------HHHH------------HhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664 477 VVEAEMKTQ----------LALA------------NKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (594)
Q Consensus 477 ~~eaEik~~----------L~la------------~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E 534 (594)
-++.++... |.-- ..--......+.........+..++..++.+...+...+..|+..
T Consensus 610 ~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~~~ 689 (880)
T PRK02224 610 RLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENE 689 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322111 1000 011113334444555555666666666666667777777666665
Q ss_pred HHH
Q 007664 535 VEK 537 (594)
Q Consensus 535 Iek 537 (594)
++.
T Consensus 690 ~e~ 692 (880)
T PRK02224 690 LEE 692 (880)
T ss_pred HHH
Confidence 543
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.50 E-value=9.4 Score=47.27 Aligned_cols=63 Identities=21% Similarity=0.373 Sum_probs=33.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA 448 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~ 448 (594)
.++.+++.+..++..+.+..+.++.........+..+...+......+.-++.++..++.+..
T Consensus 604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 666 (1201)
T PF12128_consen 604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNERE 666 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 566666666666666666655555554444444444444444444444444444444444433
No 26
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=95.40 E-value=3.5 Score=41.73 Aligned_cols=147 Identities=19% Similarity=0.271 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEM--------------DLKESQRRLETSQNQLKEAELKLEELETQLAFAN 451 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~--------------aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN 451 (594)
.++.+++.++.+...+..|++..+-.-++-+. .......+|..+++-..+++.|..+.-..|-.++
T Consensus 15 ~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE 94 (205)
T KOG1003|consen 15 LLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIE 94 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888887777776654433222211 1222334556666666666777777777777776
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664 452 KSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISL 531 (594)
Q Consensus 452 ~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sL 531 (594)
+.-...+.+.+.++.+..+|+-.+..+..-++ +-..+...+.+.++-.....+.+..+|...++-++-...-|..|
T Consensus 95 ~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk----~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakL 170 (205)
T KOG1003|consen 95 GELERAEERAEAAESQSEELEEDLRILDSNLK----SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKL 170 (205)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 66666666666555555555554444433322 22222334444445555555555555555555555555555555
Q ss_pred HHHHH
Q 007664 532 EDEVE 536 (594)
Q Consensus 532 E~EIe 536 (594)
+.+++
T Consensus 171 eke~D 175 (205)
T KOG1003|consen 171 EKERD 175 (205)
T ss_pred cccHH
Confidence 55544
No 27
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.25 E-value=4.3 Score=41.87 Aligned_cols=66 Identities=21% Similarity=0.368 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA 450 (594)
Q Consensus 385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~a 450 (594)
+.+..++..+...+..|..+++........++..+..++..++..-..-..++.++.-|+-+|++.
T Consensus 71 a~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl 136 (312)
T PF00038_consen 71 ARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL 136 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence 356677777888888888888887777777888887777777777777777777777777777774
No 28
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.21 E-value=5.7 Score=47.28 Aligned_cols=51 Identities=31% Similarity=0.417 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHH
Q 007664 511 ESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562 (594)
Q Consensus 511 EsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e 562 (594)
.+.++.++.+++..+.++.-|+.++.+.|+. .++..+|+.|+.+..++..+
T Consensus 513 ~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~-~e~~~r~~~Le~ev~~~~ee 563 (775)
T PF10174_consen 513 DSEIERLEIELEKKREKHEKLEKQLEKLRAN-AELRDRIQQLEQEVTRYREE 563 (775)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-HhhcchHHHHHHHHHHHHHH
Confidence 3566677788888899999999999997766 58888899999888777543
No 29
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.12 E-value=7.6 Score=45.14 Aligned_cols=132 Identities=16% Similarity=0.227 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH---HHHHHHHHhhHHHHHHHHHHHHhhHHHHHH
Q 007664 436 AELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM---KTQLALANKSKQAAEEEVKSAKSKKEAAES 512 (594)
Q Consensus 436 ae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEi---k~~L~la~eS~s~~~eeL~a~~a~kkelEs 512 (594)
+...+..|..+|+.-...+..+..-...-+.+..+|+..|+.+.... .+.|+.-. +...+ +..+-+..++|..
T Consensus 92 L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lq---sdk~t-~SRAlsQN~eLK~ 167 (617)
T PF15070_consen 92 LRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQ---SDKAT-ASRALSQNRELKE 167 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccchH-HHHHHHhHHHHHH
Confidence 34444555555544333333443333344455556666666554432 22222211 11112 2233455678888
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHH-HHHHH
Q 007664 513 RLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ-HEVKL 571 (594)
Q Consensus 513 qLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~-~e~~~ 571 (594)
||..++.=+..|++.---|...+.-|...--++..||.+|+..+-.++.-++.. +|+..
T Consensus 168 QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~ 227 (617)
T PF15070_consen 168 QLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQS 227 (617)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 888888888888888878888888888888899999999998888876655555 44443
No 30
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.10 E-value=2.5 Score=43.80 Aligned_cols=47 Identities=36% Similarity=0.538 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQL 433 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L 433 (594)
+..+++.+...+..++..++.++.++..++..+.++..++...+..+
T Consensus 36 ~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555444444
No 31
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.48 E-value=5 Score=46.39 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHH
Q 007664 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN---KSKQAVEVEMKAA 464 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN---~sk~~~e~~ve~~ 464 (594)
..|++.+..++..+...++.++.+...+...+..+...++.......+.+..+.=...-.++.. .....++.-+.+.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555554444444444444433333332222222222 2333344445555
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-Hhhc-
Q 007664 465 IAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKE-RALS- 542 (594)
Q Consensus 465 ~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekE-RalS- 542 (594)
.++...|.++-+-..+.+...+..-+...+....+....-.+.+.+..+++.+..|+......+.-|..++++= +..+
T Consensus 407 ~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~R 486 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNR 486 (594)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH
Confidence 55666666666666655544433333322222222222234444455555555555555555555555544420 0000
Q ss_pred -------HHHHHHhHHHHHHHhhh
Q 007664 543 -------EENIANFQKSKDELSKV 559 (594)
Q Consensus 543 -------~E~~aKC~~LEeeLsr~ 559 (594)
-|+..-.++=.++|.|.
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI~KI 510 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEIEKI 510 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 24555566666666666
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.47 E-value=9.8 Score=46.59 Aligned_cols=79 Identities=15% Similarity=0.275 Sum_probs=39.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 007664 405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT 484 (594)
Q Consensus 405 leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~ 484 (594)
+..++++.+|.- +....++|......+.-.+++...++..+.........+..++.+.+++.+.+-.-+.....||+.
T Consensus 264 l~~Lk~k~~W~~--V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~ 341 (1074)
T KOG0250|consen 264 LEQLKAKMAWAW--VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEE 341 (1074)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHH
Confidence 445555555432 333444555555555555555555555555555555555544555555555444444444555444
Q ss_pred H
Q 007664 485 Q 485 (594)
Q Consensus 485 ~ 485 (594)
.
T Consensus 342 ~ 342 (1074)
T KOG0250|consen 342 A 342 (1074)
T ss_pred H
Confidence 3
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.41 E-value=5.2 Score=47.04 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 506 KKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (594)
Q Consensus 506 ~kkelEsqLe~~EaEa~~L~~KV~sLE~EI 535 (594)
.++.||..+..+..|++.....+..||.++
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.35 E-value=11 Score=46.47 Aligned_cols=151 Identities=21% Similarity=0.310 Sum_probs=91.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hh
Q 007664 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA-----------NK 452 (594)
Q Consensus 384 ~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~a-----------N~ 452 (594)
+..++..+..+.+++-.|+..+++...++.+++.++..++..+..++..+.-+...++-.+..|+.. .+
T Consensus 400 ~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~ 479 (1293)
T KOG0996|consen 400 DVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE 479 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 4567788999999999999999999999999999988888877777766666655555555555542 33
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 453 SKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQ---AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVI 529 (594)
Q Consensus 453 sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s---~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~ 529 (594)
.+..++.++.....+.+++.+++..++.|++=++...+.-.. .....|.++.+.+.+-...+-.+..++..+..++.
T Consensus 480 e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~ 559 (1293)
T KOG0996|consen 480 EIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELK 559 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344455555555555567777777777776644444332221 12223333334444444444444444444333333
Q ss_pred hhHHH
Q 007664 530 SLEDE 534 (594)
Q Consensus 530 sLE~E 534 (594)
..+.+
T Consensus 560 ~~~k~ 564 (1293)
T KOG0996|consen 560 EKEKE 564 (1293)
T ss_pred HHHHh
Confidence 33333
No 35
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.27 E-value=20 Score=44.87 Aligned_cols=100 Identities=13% Similarity=0.199 Sum_probs=59.0
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHhh
Q 007664 465 IAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISL---EDEVEKERAL 541 (594)
Q Consensus 465 ~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sL---E~EIekERal 541 (594)
..+...++.+|..+..+....-. ..+-.....++...+.++..+...+..+..+...+..+|..| ..++..++.-
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~--~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klk 875 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQ 875 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555544444331110 122344556666667777777666677777777777777777 5555555555
Q ss_pred cHHHHHHhHHHHHHHhhhhHHHHHH
Q 007664 542 SEENIANFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 542 S~E~~aKC~~LEeeLsr~k~e~e~~ 566 (594)
-.+-..+-.+|+.+|.....+++-+
T Consensus 876 l~~~l~~r~~le~~L~el~~el~~l 900 (1311)
T TIGR00606 876 IGTNLQRRQQFEEQLVELSTEVQSL 900 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667778888888876655444
No 36
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.09 E-value=7.4 Score=39.29 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 007664 393 VLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA---ELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469 (594)
Q Consensus 393 ~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Ea---e~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~ 469 (594)
-+.+++..|+-.++.++-.=+.|--.+.....++...+..+..+ +..+++|+.-+...++.+..+-..-+-++....
T Consensus 19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q 98 (193)
T PF14662_consen 19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQ 98 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777777777778888888888888777 888999999999999999998888888888888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHH
Q 007664 470 VAESKLSVVEAEMKTQLALANKSKQ---AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI 546 (594)
Q Consensus 470 ~lEskl~~~eaEik~~L~la~eS~s---~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~ 546 (594)
.|..++.-++.|-++.+.-....+. ...++-..+..+.=++++=+--..+.+..-...|..|..-|+.=|+.-.++.
T Consensus 99 ~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR 178 (193)
T PF14662_consen 99 SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELR 178 (193)
T ss_pred HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777655443332 2222333344444445555556778888888899999999998899999999
Q ss_pred HHhHHHHHHHhh
Q 007664 547 ANFQKSKDELSK 558 (594)
Q Consensus 547 aKC~~LEeeLsr 558 (594)
.+...||++|+-
T Consensus 179 ~e~s~LEeql~q 190 (193)
T PF14662_consen 179 LEKSRLEEQLSQ 190 (193)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.03 E-value=12 Score=41.51 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007664 421 ESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (594)
Q Consensus 421 ~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~ 456 (594)
..+.+++.........+..+..|+.++...+.....
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~ 252 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIED 252 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 334444444444444444444444444444444333
No 38
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.97 E-value=6.2 Score=46.44 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=12.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENM 408 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKlekl 408 (594)
.++.||..++++...|+.|+-.|
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L 479 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNL 479 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554433
No 39
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.95 E-value=5.7 Score=42.59 Aligned_cols=139 Identities=22% Similarity=0.337 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRR----LETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~q----le~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~ 464 (594)
.-++.++.++-.|++.-..|..|-..|...-.....+ +.-+-.+|.+|..+++.|+..|..-.+.......++-..
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788878777766666665555443322221 233556777888888888888877777777777777766
Q ss_pred HHhhhhhhhhhhhHHH---HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007664 465 IAARGVAESKLSVVEA---EMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK 527 (594)
Q Consensus 465 ~~~~~~lEskl~~~ea---Eik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~K 527 (594)
....-.+..++...-. |+...|..++++......+|.-+..+|.++..-|..++.|+++++.+
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~ 305 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR 305 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 6666666766664433 56666888899988888999999999999999999999999999875
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=93.81 E-value=23 Score=43.87 Aligned_cols=175 Identities=29% Similarity=0.382 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~ 469 (594)
++..+..++..++..+.+...+...+...+..+..++...+.++..+...+..+..++.........+..++........
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666666666666666666665555555555555555555444444444444444444443
Q ss_pred hhhhhhhhHHHHHHHH---HHHHHhhH--------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007664 470 VAESKLSVVEAEMKTQ---LALANKSK--------------QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLE 532 (594)
Q Consensus 470 ~lEskl~~~eaEik~~---L~la~eS~--------------s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE 532 (594)
.+...+..++.++... +....+.. ....+.+......+..+..++..++.++..+......|+
T Consensus 748 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1163)
T COG1196 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLE 827 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332222222111 11111111 122234444445555555555555555555555555555
Q ss_pred HHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHH
Q 007664 533 DEVEKERALSEENIANFQKSKDELSKVKQEIE 564 (594)
Q Consensus 533 ~EIekERalS~E~~aKC~~LEeeLsr~k~e~e 564 (594)
.+|+.=+.--.++..+|..|...+......++
T Consensus 828 ~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 859 (1163)
T COG1196 828 QEIEELEEEIEELEEKLDELEEELEELEKELE 859 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555333334677777777777766544433
No 41
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.78 E-value=9.7 Score=39.55 Aligned_cols=127 Identities=26% Similarity=0.345 Sum_probs=62.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 007664 404 ELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK 483 (594)
Q Consensus 404 KleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik 483 (594)
....++-.......+|..++..++.....+..++..+.+|+.| +.+++.++.++..+...++.++. .++
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~q-------v~~~e~ei~~~r~r~~~~e~kl~----~v~ 86 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQ-------VSQLESEIQEIRERIKRAEEKLS----AVK 86 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh----ccc
Confidence 3344444444445555555555555555444444444444444 55555555555555544433221 111
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHH
Q 007664 484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI 546 (594)
Q Consensus 484 ~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~ 546 (594)
. +++. .++.-++.........++..+..+..+...|..++..|...+..-+....++.
T Consensus 87 ~----~~e~-~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 87 D----EREL-RALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred c----HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111 23344455555566666666666666666666666666666655555444443
No 42
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.74 E-value=3.7 Score=49.77 Aligned_cols=124 Identities=20% Similarity=0.251 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHH-------HHHH
Q 007664 412 KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEA-------EMKT 484 (594)
Q Consensus 412 K~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~ea-------Eik~ 484 (594)
+.++++.|.....+++.+...+...++...-|+...+..+.+....+..+...+.....|.+.+--+++ +.++
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~ 868 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKK 868 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 344555555555555555555555555555555554444444444444444333333333333322222 2222
Q ss_pred HHHHHH-----------------hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 485 QLALAN-----------------KSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (594)
Q Consensus 485 ~L~la~-----------------eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EI 535 (594)
.+..-+ -+......+...+.-+++.++..+..++.|....+.+|..|..+.
T Consensus 869 ~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~ 936 (1174)
T KOG0933|consen 869 AQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKH 936 (1174)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhc
Confidence 211111 111122233333466788888888888888888888888888774
No 43
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.69 E-value=6.9 Score=37.56 Aligned_cols=90 Identities=21% Similarity=0.233 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007664 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKE-------SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVE 460 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~-------~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ 460 (594)
..+|..+..+.+.|+.+++.|+++....+..+-. ++..+.+...++.++-..+..|...|+.+...+..+...
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666777777777777777666555554443 444445555556666666666777777777777777776
Q ss_pred HHHHHHhhhhhhhhhhh
Q 007664 461 MKAAIAARGVAESKLSV 477 (594)
Q Consensus 461 ve~~~~~~~~lEskl~~ 477 (594)
+..+-++..+|++....
T Consensus 89 lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 89 LQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHhHH
Confidence 66666666665554433
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.61 E-value=8 Score=46.08 Aligned_cols=95 Identities=19% Similarity=0.326 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007664 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (594)
Q Consensus 385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~ 464 (594)
..+..||+.+..++-.|..||--+...+-....++.....+.+.+......+.+++.|+|..|...--+++-++.+++.+
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~ 519 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQK 519 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 45789999999999999999999999988888899999899888888888889999999998888777888888888765
Q ss_pred HHhhhhhhhhhhhHH
Q 007664 465 IAARGVAESKLSVVE 479 (594)
Q Consensus 465 ~~~~~~lEskl~~~e 479 (594)
-.-+..-.+++..++
T Consensus 520 q~a~~~~~~~~s~L~ 534 (1118)
T KOG1029|consen 520 QSAHKETTQRKSELE 534 (1118)
T ss_pred hhhccCcchHHHHHH
Confidence 555544344343333
No 45
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=93.44 E-value=4 Score=47.16 Aligned_cols=102 Identities=27% Similarity=0.271 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHH
Q 007664 422 SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVK 501 (594)
Q Consensus 422 ~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~ 501 (594)
+...++..++++..++...+.|..||..+|++..... ......+...||+.+.+|..+...-.........++.
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~------~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e 313 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAK------IDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEERE 313 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc------CCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888899999999999999999998877541 1122466778888888988776555555555556666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 502 SAKSKKEAAESRLRAVEAEMETLRSKVI 529 (594)
Q Consensus 502 a~~a~kkelEsqLe~~EaEa~~L~~KV~ 529 (594)
...+....++.++.....++++|..|..
T Consensus 314 ~~~~qI~~le~~l~~~~~~leel~~kL~ 341 (629)
T KOG0963|consen 314 KHKAQISALEKELKAKISELEELKEKLN 341 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666666665543
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.43 E-value=18 Score=41.62 Aligned_cols=82 Identities=30% Similarity=0.406 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL-------EELETQLAFANKSKQAVEV 459 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL-------~ELQ~QL~~aN~sk~~~e~ 459 (594)
+..|.+.+......|+..+..|..+...++..|...+...+....+..++.... ..|+.++..+...+..++.
T Consensus 148 ~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEe 227 (546)
T PF07888_consen 148 CQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEE 227 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777777777777666666555554444443333 3444444444445555555
Q ss_pred HHHHHHHhh
Q 007664 460 EMKAAIAAR 468 (594)
Q Consensus 460 ~ve~~~~~~ 468 (594)
++..+..+.
T Consensus 228 di~~l~qk~ 236 (546)
T PF07888_consen 228 DIKTLTQKE 236 (546)
T ss_pred HHHHHHHHH
Confidence 554443333
No 47
>PRK03918 chromosome segregation protein; Provisional
Probab=93.17 E-value=22 Score=41.80 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007664 412 KSELEMDLKESQRRLETS 429 (594)
Q Consensus 412 K~eLE~aL~~~~~qle~S 429 (594)
...+...+..++.++...
T Consensus 202 ~~~l~~ei~~l~~e~~~l 219 (880)
T PRK03918 202 LEEVLREINEISSELPEL 219 (880)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 48
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=93.15 E-value=0.026 Score=66.77 Aligned_cols=155 Identities=20% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 007664 405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT 484 (594)
Q Consensus 405 leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~ 484 (594)
-.+|+++..+|++.|............+++-+...+.+||.+|+.+......+...+..++.+...|.+.|.-+...
T Consensus 548 kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee~~~~--- 624 (859)
T PF01576_consen 548 KKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEELREA--- 624 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 46788888888988888888888888888888888889998888877777666544444433333333333322222
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHH
Q 007664 485 QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563 (594)
Q Consensus 485 ~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~ 563 (594)
++.+......++.++.-+......+-.+--.+..+...|...|..|+.+++.+..-.....-|+++...+..++..++
T Consensus 625 -~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~eL 702 (859)
T PF01576_consen 625 -LEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAEEL 702 (859)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 555555566666777777777777776766777777888888888888888888888888888888888888876443
No 49
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=92.97 E-value=0.084 Score=61.05 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (594)
Q Consensus 504 ~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek 537 (594)
...+..+..++..++.++..|...+..|+.+|++
T Consensus 502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 502 SEELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999986
No 50
>PRK03918 chromosome segregation protein; Provisional
Probab=92.50 E-value=27 Score=41.10 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhhhh--hhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHh
Q 007664 193 DLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLS--TKAAETASKQHLESIKKLAKVEAECLRLKAVVR 262 (594)
Q Consensus 193 ~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere~s--~~aae~a~KQhlEsvKKiakLEaECqRLr~l~r 262 (594)
.+...++.++++...++.++..+++.+. ..+..+. ....... ++-.+....+..+..++.+++.+.+
T Consensus 304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~--~~e~~~~~~~e~~~~~-~~~~~~~~~l~~~~~~l~~~~~~~~ 372 (880)
T PRK03918 304 EYLDELREIEKRLSRLEEEINGIEERIK--ELEEKEERLEELKKKL-KELEKRLEELEERHELYEEAKAKKE 372 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666554 1111111 1111111 3333444555555556666555543
No 51
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.47 E-value=37 Score=42.59 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 007664 193 DLCSKLEAAEKQNSALKLELLSLVKEL 219 (594)
Q Consensus 193 ~L~~rLes~EKen~sLkyE~~~l~kEL 219 (594)
.+..-+....++...+.-++..+++++
T Consensus 574 ~l~~~~~~~~~el~~~~~~~~~~~~el 600 (1311)
T TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKEL 600 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444
No 52
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.17 E-value=39 Score=42.25 Aligned_cols=55 Identities=27% Similarity=0.343 Sum_probs=34.1
Q ss_pred HHHHHHHhhcccch-HHHHHHHHHHHHHhh----hHHHhHHHHHHHHHHHHHHhhhhhhh
Q 007664 67 EKLSAALLNVSAKE-DLVKQHAKVAEEAVS----GWEKAENELSTLKQQLKAASQKNSAL 121 (594)
Q Consensus 67 ekLs~al~~~~~Kd-~lvkqh~KvaeEAv~----GwEKae~E~~~lK~~Le~~~~~~~~~ 121 (594)
++|-....++.-++ .|.-+..|.+++=++ --.+.++.+..++.+|+.+.+.+..+
T Consensus 475 ~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 475 EKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555333 444455666665443 55677888888888888886666554
No 53
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.65 E-value=54 Score=42.74 Aligned_cols=183 Identities=23% Similarity=0.309 Sum_probs=116.9
Q ss_pred hhhhHhhHhHHHHHHHhhcccchHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhH---HHH
Q 007664 58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGA---LKE 134 (594)
Q Consensus 58 ~~~~~k~LnekLs~al~~~~~Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~A---LKe 134 (594)
+...|+.|+.-|.....+.++.+. ..++.+ .+..-|+..++.+|+...-...-..+|..-|-.. +|.
T Consensus 634 ~e~~l~qLe~~le~~~~E~~~~~~-------~l~e~~---~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~ 703 (1822)
T KOG4674|consen 634 KEKRLRQLENELESYKKEKRENLK-------KLQEDF---DSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKE 703 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999977777765543 334444 3456688899999988877777777777766654 455
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHH---HHHHHHHHHHHHHhhhhhhhhhh--HHHHHHHHHHHHhhhhhh
Q 007664 135 CVRQLRQAREEQEQRIQETVSKQNLEWESKKSEL---ESKLVDLQKKLQTAKSEAAASAD--RDLCSKLEAAEKQNSALK 209 (594)
Q Consensus 135 CmrQLr~~rEEqEqki~eav~kks~e~e~~~~el---E~kl~e~~~~L~~~~~e~~a~~~--~~L~~rLes~EKen~sLk 209 (594)
=|-.|+ ++-+.++..|.+.=+....+..+| ..++.-+...+...+.|+....+ .-|..-++++ ...+
T Consensus 704 e~~tL~----er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l----~~e~ 775 (1822)
T KOG4674|consen 704 EVETLE----ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKL----SAEQ 775 (1822)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence 555555 667777777776644333333332 23444444555555555543221 2344444444 4456
Q ss_pred HHHHHHHhhhhHhHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhhc
Q 007664 210 LELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKA 264 (594)
Q Consensus 210 yE~~~l~kELeiR~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK~ 264 (594)
|.++.+-..|++=..+++.+ ++|-|+.++ .+|-.|+-+.++|+.=....
T Consensus 776 ~~L~~~l~~lQt~~~~~e~s----~~~~k~~~e--~~i~eL~~el~~lk~klq~~ 824 (1822)
T KOG4674|consen 776 ESLQLLLDNLQTQKNELEES----EMATKDKCE--SRIKELERELQKLKKKLQEK 824 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776665 567788887 78899999999987655443
No 54
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.30 E-value=18 Score=43.27 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=31.9
Q ss_pred HHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHH
Q 007664 497 EEEVKSAKSKKEAA----ESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS 552 (594)
Q Consensus 497 ~eeL~a~~a~kkel----EsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~L 552 (594)
..+|++...++..+ +-++..++.|.+..-..|+.+-..+.+=|.-..-...+|++|
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~ 589 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEEL 589 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544444433 344555667777777777777777666555554445555544
No 55
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.61 E-value=3.3 Score=40.67 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=15.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLR 525 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~ 525 (594)
.++.+++-.+..++.++..++.|-..|.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666655554
No 56
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.39 E-value=15 Score=34.15 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLE 427 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle 427 (594)
++..++..+...+.....++..+..+..........++..|+
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE 48 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE 48 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666555555555555665555
No 57
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.31 E-value=17 Score=41.88 Aligned_cols=100 Identities=21% Similarity=0.323 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHH---HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664 454 KQAVEVEMKAAIAARGVAESKLSVVEA---EMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVIS 530 (594)
Q Consensus 454 k~~~e~~ve~~~~~~~~lEskl~~~ea---Eik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~s 530 (594)
++.++..|+.+-.....-|+.++.++. ++++.++++.=|- .+...|+.++.++.--+..+..+...|+.+|-.
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~----~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISG----EDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444443333333333333333443 3444455553332 567788999999999999999999999999999
Q ss_pred hHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 531 LEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 531 LE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
++.+++. .-.++..+..++-..+.|.+
T Consensus 365 ~~l~~~~---~f~~le~~~~~~~~l~~~i~ 391 (581)
T KOG0995|consen 365 LKLEIED---FFKELEKKFIDLNSLIRRIK 391 (581)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 9988763 33344445555555555544
No 58
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.30 E-value=39 Score=41.32 Aligned_cols=87 Identities=20% Similarity=0.338 Sum_probs=55.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH--------------HHHHH------------------hhHHHHHH
Q 007664 451 NKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQ--------------LALAN------------------KSKQAAEE 498 (594)
Q Consensus 451 N~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~--------------L~la~------------------eS~s~~~e 498 (594)
.+--..+..+|+..-++..+|+--|+.+.+||... |+-+| -..+-...
T Consensus 324 EERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~k 403 (1243)
T KOG0971|consen 324 EERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQK 403 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 33334444555555555567777777777776543 22222 11123455
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (594)
Q Consensus 499 eL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek 537 (594)
+|+..+++..++..+-+.+..++..+..+|.-|.++|+.
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDA 442 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDA 442 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888888888888888888887777763
No 59
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.80 E-value=60 Score=40.14 Aligned_cols=127 Identities=22% Similarity=0.200 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhh--hH-------HHHHHHHHH
Q 007664 131 ALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASA--DR-------DLCSKLEAA 201 (594)
Q Consensus 131 ALKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~--~~-------~L~~rLes~ 201 (594)
.|++-+.-++-.=+..++.+.-...-.|..=+ ...-|+.+|......+-.+..+..... -. .....+...
T Consensus 361 ~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~-~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~ 439 (1174)
T KOG0933|consen 361 KLKEAFQEDSKLLEKAEELVESLTAGLSSNED-EEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATA 439 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 46666666666666666555555444444433 566677777776666555544332111 00 111222222
Q ss_pred HHhhhhhhHHHHHHHhhhh---HhHHhhhhhhhHHHHHhHHhHHhH-HHHHHHHHHHHHHHH
Q 007664 202 EKQNSALKLELLSLVKELE---LRIVERDLSTKAAETASKQHLESI-KKLAKVEAECLRLKA 259 (594)
Q Consensus 202 EKen~sLkyE~~~l~kELe---iR~~Ere~s~~aae~a~KQhlEsv-KKiakLEaECqRLr~ 259 (594)
-+++-...-++..++.+.+ -|-....|. -..+.+-+||.... .-|.+|..+..||.+
T Consensus 440 ~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~-~~~~e~l~q~~~~l~~~~~~lk~~~~~l~a 500 (1174)
T KOG0933|consen 440 SAEYVKDIEELDALQNEVEKLKKRLQSLGYK-IGQEEALKQRRAKLHEDIGRLKDELDRLLA 500 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222223333332221 111111222 23456667777766 456788888777765
No 60
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.74 E-value=72 Score=41.04 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=9.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 007664 504 KSKKEAAESRLRAVEAEMETLRSK 527 (594)
Q Consensus 504 ~a~kkelEsqLe~~EaEa~~L~~K 527 (594)
......++.++..+++....++..
T Consensus 455 e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 455 TEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444333333
No 61
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.00 E-value=65 Score=39.51 Aligned_cols=162 Identities=25% Similarity=0.363 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 007664 394 LIHRTAELEEELENMRAEKSELEMDLKES------QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467 (594)
Q Consensus 394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~------~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~ 467 (594)
++.|+.+|.+||+-+...+.|=...|.+. .+++..-+.++++. -++||.+|..+......+..=-+.--..
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~q---qa~Lqrel~raR~e~keaqe~ke~~k~e 305 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQ---QADLQRELKRARKEAKEAQEAKERYKEE 305 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999888776665544443322 24555666666654 6678888777665444321100000000
Q ss_pred hhhhhhhhhh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---------------HHHHHHh
Q 007664 468 RGVAESKLSV--VEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMET---------------LRSKVIS 530 (594)
Q Consensus 468 ~~~lEskl~~--~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~---------------L~~KV~s 530 (594)
....-.-+++ ++-|+ |.+--.-...++.++.....+|+.-|+.+.+|+++ |.-.-..
T Consensus 306 mad~ad~iEmaTldKEm------AEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~r 379 (1243)
T KOG0971|consen 306 MADTADAIEMATLDKEM------AEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNAR 379 (1243)
T ss_pred HHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHH
Confidence 0000000000 00111 11111122334445555555555555555555443 2222233
Q ss_pred hHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHH
Q 007664 531 LEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564 (594)
Q Consensus 531 LE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e 564 (594)
|-+-+-.=|.+|.....--+++-.++.++..|+.
T Consensus 380 LKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~ 413 (1243)
T KOG0971|consen 380 LKDALVRLRDLSASEKQDHQKLQKELEKKNSELE 413 (1243)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHH
Confidence 4444455567777777777777777777765543
No 62
>PRK09039 hypothetical protein; Validated
Probab=88.96 E-value=35 Score=36.88 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=52.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
..+|....+.+.+.-.++..+..++..|+..+..|+..|..=.....+..++..+|+..|....
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777888888888999999999999999999999998777777788888888877777653
No 63
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.88 E-value=59 Score=38.82 Aligned_cols=152 Identities=22% Similarity=0.256 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH
Q 007664 102 NELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQT 181 (594)
Q Consensus 102 ~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~ 181 (594)
.|+.-||+||.-+-..+.. |-..|.++-.||-..+.+=- .-|+-|..-+..+..++..-..+ +...-..
T Consensus 265 ~EiqKL~qQL~qve~EK~~-------L~~~L~e~Q~qLe~a~~als-~q~eki~~L~e~l~aL~~l~~~k--e~~~~~d- 333 (717)
T PF09730_consen 265 SEIQKLKQQLLQVEREKSS-------LLSNLQESQKQLEHAQGALS-EQQEKINRLTEQLDALRKLQEDK--EQQSAED- 333 (717)
T ss_pred HHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccch--hhhhhhh-
Confidence 4688899999977666664 77889999999987765422 11122222222222222100000 0000000
Q ss_pred hhhhhhhh-----------hhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhH---hH-HhhhhhhhHHHHHhHHhHHhHH-
Q 007664 182 AKSEAAAS-----------ADRDLCSKLEAAEKQNSALKLELLSLVKELEL---RI-VERDLSTKAAETASKQHLESIK- 245 (594)
Q Consensus 182 ~~~e~~a~-----------~~~~L~~rLes~EKen~sLkyE~~~l~kELei---R~-~Ere~s~~aae~a~KQhlEsvK- 245 (594)
...+.... ....|..++..+..|+..||-||..|..++.- +- .++.........-..++.-..+
T Consensus 334 ~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~ 413 (717)
T PF09730_consen 334 SEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKS 413 (717)
T ss_pred cccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000000 01357788888899999999998888664432 21 2222223333444444444445
Q ss_pred ------HHHHHHHHHHHHHHHHhhc
Q 007664 246 ------KLAKVEAECLRLKAVVRKA 264 (594)
Q Consensus 246 ------KiakLEaECqRLr~l~rK~ 264 (594)
+|..||++++-++.++...
T Consensus 414 ~re~qeri~~LE~ELr~l~~~A~E~ 438 (717)
T PF09730_consen 414 SREDQERISELEKELRALSKLAGES 438 (717)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 8999999999999998874
No 64
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=88.76 E-value=48 Score=37.68 Aligned_cols=154 Identities=19% Similarity=0.241 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH---HHHHHhhHH
Q 007664 418 DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQ---LALANKSKQ 494 (594)
Q Consensus 418 aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~---L~la~eS~s 494 (594)
.|..+...|+..+..|..+...+.-|+.-.+..+.........+..+.++-+...+.+..+++++.+. |.....-..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 34444444444444444444444444444444444444444444444444455555556666655433 333322222
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHH-HHHHH
Q 007664 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ-HEVKL 571 (594)
Q Consensus 495 ~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~-~e~~~ 571 (594)
.....+..+......+-+..+.+..++...+..+.-+-.+++.=|+--.....||+....++.-.+.-..++ .++..
T Consensus 362 ~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~ 439 (522)
T PF05701_consen 362 KAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKA 439 (522)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222344455666666666667777777777777777777777777777788888888877777765444444 44443
No 65
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.63 E-value=17 Score=38.66 Aligned_cols=88 Identities=17% Similarity=0.295 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhh
Q 007664 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAES 473 (594)
Q Consensus 394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEs 473 (594)
+.++|.+|+..+++|..|+-..+.-|.-+..-|..-+....+......-|++.....-++-..++..-.-+..+.+.=++
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 56799999999999999998877777666666666666666666666666666555444444443333333333344455
Q ss_pred hhhhHHHH
Q 007664 474 KLSVVEAE 481 (594)
Q Consensus 474 kl~~~eaE 481 (594)
+|+++++-
T Consensus 96 qv~~lEgQ 103 (307)
T PF10481_consen 96 QVNFLEGQ 103 (307)
T ss_pred HHHHHHHH
Confidence 55555543
No 66
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.46 E-value=24 Score=33.91 Aligned_cols=110 Identities=24% Similarity=0.262 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 007664 400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE 479 (594)
Q Consensus 400 eLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~e 479 (594)
...+++..++.+++-++--. ......|...+.....+-.+...+...+..+..++..+...+..|+.-|..+-
T Consensus 7 ~v~~kLK~~~~e~dsle~~v-------~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHV-------ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667776666555444 33334444444444455555556666667777777777777776666655555
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007664 480 AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAE 520 (594)
Q Consensus 480 aEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaE 520 (594)
.|.. .|.....-....+.+|+....+ +...|...+.+
T Consensus 80 sEk~-~L~k~lq~~q~kv~eLE~~~~~---~~~~l~~~E~e 116 (140)
T PF10473_consen 80 SEKE-NLDKELQKKQEKVSELESLNSS---LENLLQEKEQE 116 (140)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHH
Confidence 5533 2332223333445555544443 33445555554
No 67
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=88.24 E-value=69 Score=38.88 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e 458 (594)
.|+.+|-.++-+...|-.|+..||.+.+.+.|....++..+++-..-++-+-...+++|.|.+.....+.+++
T Consensus 334 dirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 334 DIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3455556666677777778888888888888888888888888887777777778888888888777776664
No 68
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.63 E-value=33 Score=34.43 Aligned_cols=59 Identities=31% Similarity=0.352 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007664 398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (594)
Q Consensus 398 vaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~ 456 (594)
|..|.+.+..|...-...++.+.++..++.....-|..++....+|+.+|.....-+..
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~ 87 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS 87 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554455556667777777777778888888888888887775554444
No 69
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.54 E-value=33 Score=34.40 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=19.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVIS 530 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~s 530 (594)
-++-.-..+..++...+..+..|+..|..+|.-
T Consensus 157 rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 157 RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666666666643
No 70
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.41 E-value=34 Score=42.77 Aligned_cols=134 Identities=21% Similarity=0.285 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGV 470 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~ 470 (594)
+.++.+++.+|+.++++|+-+.+.---+-..++..-...+.+.+.|++.+..||.+++.++.- ++.+++...+.
T Consensus 1614 ~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l---~~~r~~g~~~a--- 1687 (1758)
T KOG0994|consen 1614 ATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRL---LEKRMEGSQAA--- 1687 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhcchhH---
Confidence 334444666666666666655544333334444445555666667777777777775555432 22222211111
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 471 AESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (594)
Q Consensus 471 lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EI 535 (594)
-.|.+.+..|-.++|.-++.-. .-|+-++..|..-+-+|....+++.-|...|.++-.-|
T Consensus 1688 -r~rAe~L~~eA~~Ll~~a~~kl----~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1688 -RERAEQLRTEAEKLLGQANEKL----DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1123335555555555554333 23444555666666666666666666665555554443
No 71
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=87.35 E-value=63 Score=37.42 Aligned_cols=98 Identities=21% Similarity=0.320 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 007664 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~ 467 (594)
+--++......+.++.++.++..+..++..-+.+.+......+..+......+.++++++..++.-+..++.++..+...
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~e 177 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAE 177 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555677888888888888888888888888888888888888888899999999999999999988888887777
Q ss_pred hhhhhhhhhhHHHHHHHH
Q 007664 468 RGVAESKLSVVEAEMKTQ 485 (594)
Q Consensus 468 ~~~lEskl~~~eaEik~~ 485 (594)
...|...|..+...+..+
T Consensus 178 n~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 178 NSRLREELARARKQLDDE 195 (546)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 777777666655554444
No 72
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.15 E-value=1e+02 Score=39.69 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 510 AESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 510 lEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
|+..+......+..+..++..|+.++.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~ 466 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLS 466 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 73
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=87.13 E-value=80 Score=38.38 Aligned_cols=68 Identities=15% Similarity=0.218 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~ 457 (594)
++-....|+..|+.+.-.+|.+|..|+-+...++.++......|.++..++.++--.|..--+.++.+
T Consensus 100 dlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~ 167 (1265)
T KOG0976|consen 100 DLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMI 167 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHH
Confidence 44455557777888877777777777777777776666666666666666666655555544444444
No 74
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=86.93 E-value=36 Score=34.15 Aligned_cols=123 Identities=24% Similarity=0.329 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 007664 81 DLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLE 160 (594)
Q Consensus 81 ~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks~e 160 (594)
+|++.|.+. ...+|.=-.+.|.-|+. |=..||+=|-++|.--+..+..++++....- .
T Consensus 2 ~L~~~He~a--------------f~~iK~YYndIT~~NL~-------lIksLKeei~emkk~e~~~~k~m~ei~~eN~-~ 59 (201)
T PF13851_consen 2 ELMKNHEKA--------------FQEIKNYYNDITLNNLE-------LIKSLKEEIAEMKKKEERNEKLMAEISQENK-R 59 (201)
T ss_pred hHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 577888776 67788889999999997 6778999999999977777777777766543 3
Q ss_pred HhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhh
Q 007664 161 WESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERD 227 (594)
Q Consensus 161 ~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere 227 (594)
+-.-=..++..+.+|+++|..-.....+ -..+..|+..++++...|+.|-.+|.--+.---.||+
T Consensus 60 L~epL~~a~~e~~eL~k~L~~y~kdK~~--L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 60 LSEPLKKAEEEVEELRKQLKNYEKDKQS--LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344566777777777654433322 2367889999999999999999998877776666665
No 75
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=86.77 E-value=98 Score=39.03 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 404 ELENMRAEKSELEMDLKESQ-RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 404 KleklEaEK~eLE~aL~~~~-~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
....++.....+.+..++++ .+....++...+.+.++.+...++..+.........+++
T Consensus 466 ~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele 525 (1317)
T KOG0612|consen 466 MDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELE 525 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444 244444444444444444444444433333333333333
No 76
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.69 E-value=31 Score=33.23 Aligned_cols=44 Identities=23% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERA 540 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERa 540 (594)
.+.++.....++.+...+..+..+.......+..+...+...+.
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~ 172 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQE 172 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443333
No 77
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.32 E-value=74 Score=37.15 Aligned_cols=63 Identities=30% Similarity=0.416 Sum_probs=48.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA 448 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~ 448 (594)
+...+...-...+.+|+..+..+.....+++..+..++..+......+.+.+....+++.++.
T Consensus 318 ~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 318 TEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777888889999999988888888888887777777777777777777777766643
No 78
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=86.15 E-value=69 Score=36.68 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=27.3
Q ss_pred hHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhh
Q 007664 222 RIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRK 263 (594)
Q Consensus 222 R~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK 263 (594)
-+.|.+|+.=.-=+.+=-|++.=.-+.+|+.+...|..++.+
T Consensus 175 ~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~ 216 (569)
T PRK04778 175 ENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEE 216 (569)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666677777777777777665
No 79
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.60 E-value=1e+02 Score=38.17 Aligned_cols=147 Identities=18% Similarity=0.273 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-------H
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK-------A 463 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve-------~ 463 (594)
+...+.+..+|++.|..+..+..+.-.....|.+++..-..+..........|...+..+++.+++++.-++ .
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~ 752 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEE 752 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Confidence 344566888888888888888888877788888888888888888888888999999999888888876655 6
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHhhH------------HHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHh
Q 007664 464 AIAARGVAESKLSVVEAEMKTQLALANKSK------------QAAEEEVKSAKSKKEAAESRLRAVEAEME-TLRSKVIS 530 (594)
Q Consensus 464 ~~~~~~~lEskl~~~eaEik~~L~la~eS~------------s~~~eeL~a~~a~kkelEsqLe~~EaEa~-~L~~KV~s 530 (594)
+...++.++++.+.+++|+...|.++.... ...-.+|.+...++..++.+.-.++++.. .|...+..
T Consensus 753 i~~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~~~ 832 (1200)
T KOG0964|consen 753 IKTSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRVNE 832 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 667778999999999999998877665332 13334455555555555555555555543 35555555
Q ss_pred hHHHHHH
Q 007664 531 LEDEVEK 537 (594)
Q Consensus 531 LE~EIek 537 (594)
|+.+|-.
T Consensus 833 l~~ei~~ 839 (1200)
T KOG0964|consen 833 LEQEIGD 839 (1200)
T ss_pred HHHHhhh
Confidence 5555544
No 80
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.58 E-value=61 Score=40.00 Aligned_cols=150 Identities=21% Similarity=0.255 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhh
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLS 476 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~ 476 (594)
-+--++++|..|+.||.+|+.- .+++.-+.+|.=+ =.-..|+.+|+...+++.....+-.+-...-+.+.
T Consensus 192 ll~yieerLreLEeEKeeL~~Y-----qkldk~rr~lEYt-----iYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~ 261 (1200)
T KOG0964|consen 192 LLKYIEERLRELEEEKEELEKY-----QKLDKERRSLEYT-----IYDRELNEINGELERLEEDRSSAPEESEQYIDALD 261 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-----HHHHHhHhhhhhh-----hhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445677888888888776653 2444444444322 12234444555555555555544444444444444
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHH
Q 007664 477 VVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDEL 556 (594)
Q Consensus 477 ~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeL 556 (594)
-+++++...=. .-+.....|..+..++..+..+--.+-..-.+|..+|..|.++|.-.+..-.....-.+++++.+
T Consensus 262 ~~~d~~~~~~~----~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki 337 (1200)
T KOG0964|consen 262 KVEDESEDLKC----EIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKI 337 (1200)
T ss_pred HHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 44444432100 01111222333333333333332223333444555566666666655544433444444444444
Q ss_pred hhhh
Q 007664 557 SKVK 560 (594)
Q Consensus 557 sr~k 560 (594)
+.++
T Consensus 338 ~e~~ 341 (1200)
T KOG0964|consen 338 EEKK 341 (1200)
T ss_pred HHHH
Confidence 4443
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=85.36 E-value=53 Score=34.67 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 007664 397 RTAELEEELENMR 409 (594)
Q Consensus 397 qvaeLEeKleklE 409 (594)
+...++..+..++
T Consensus 138 ~~~~~~~~~~~l~ 150 (423)
T TIGR01843 138 RKSTLRAQLELIL 150 (423)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 82
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.05 E-value=38 Score=32.67 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLE 427 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle 427 (594)
++.....++..++.++..+.....++...+...+..+.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~ 119 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQ 119 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444444443333333
No 83
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=84.53 E-value=60 Score=34.58 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=14.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 503 ~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
...+...++.++..+...++.+..++.-+..+|.
T Consensus 228 ~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~ 261 (325)
T PF08317_consen 228 KKKELAELQEELEELEEKIEELEEQKQELLAEIA 261 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 84
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=91 Score=36.48 Aligned_cols=136 Identities=24% Similarity=0.309 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH---HHHHHHh
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVE---MKAAIAA 467 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~---ve~~~~~ 467 (594)
-+..+..+..|+..+..++.+|..+=.-|...+.+++-++..|++...++.-|-.-++....-......+ =++-..+
T Consensus 313 sel~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~k 392 (772)
T KOG0999|consen 313 SELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEK 392 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccccccccc
Confidence 3456678889999999999999999999999999999999999887766655544433322111111100 0000000
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH------HHHHHHHHHHHHHHHhhHHH
Q 007664 468 RGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRL------RAVEAEMETLRSKVISLEDE 534 (594)
Q Consensus 468 ~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqL------e~~EaEa~~L~~KV~sLE~E 534 (594)
..+.+..|.-++ | ++.... ++..++.-+..+.+.+-+++ -..+.++..+..|+.+||.-
T Consensus 393 ad~~e~~l~a~e--~-----~a~k~~-~a~~e~i~lk~ql~~l~~~~n~tde~~~~e~evq~l~~kl~lleka 457 (772)
T KOG0999|consen 393 ADLYEVDLNALE--I-----LACKYA-VAVDEMIQLKDQLKALYHQLNYTDEKVQYEKEVQELVEKLRLLEKA 457 (772)
T ss_pred chhHHhhhhhHH--H-----HHHHHH-HHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHh
Confidence 011111111110 1 122222 34455555666666666653 34678888888898888765
No 85
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=83.21 E-value=1.2e+02 Score=37.08 Aligned_cols=88 Identities=19% Similarity=0.320 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 007664 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475 (594)
Q Consensus 396 ~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl 475 (594)
.+...+.+|+..+..+..+|-..+...+.|++..+.....++.+..+|-.+|..+...-+.++.+.++.......++..+
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El 503 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQEL 503 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35666666677777788788777888888888777777777766666666666666666665555554444444444444
Q ss_pred hhHHHHHH
Q 007664 476 SVVEAEMK 483 (594)
Q Consensus 476 ~~~eaEik 483 (594)
..+..|+.
T Consensus 504 ~~l~~e~~ 511 (980)
T KOG0980|consen 504 ALLLIELE 511 (980)
T ss_pred HHHHHHHH
Confidence 44444433
No 86
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.67 E-value=69 Score=33.84 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=15.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAE 411 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaE 411 (594)
.+..++..+..++..++..+..+.+.
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l~~~ 103 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARLRAE 103 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665554443
No 87
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.50 E-value=11 Score=37.16 Aligned_cols=20 Identities=15% Similarity=0.249 Sum_probs=10.1
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 007664 497 EEEVKSAKSKKEAAESRLRA 516 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~ 516 (594)
++.+..++.+.+.|-.|...
T Consensus 164 e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 164 EEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555443
No 88
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.27 E-value=1.4e+02 Score=37.14 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhh
Q 007664 494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559 (594)
Q Consensus 494 s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~ 559 (594)
-...+++... +|.++-|+.-.++.+-+.|+.|+.-||++|-... ...++|++++--|..-
T Consensus 385 t~tleelqss--s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~----qq~~eled~~K~L~~E 444 (1195)
T KOG4643|consen 385 TGTLEELQSS--SYEELISKHLELEKEHKNLSKKHEILEERINQLL----QQLAELEDLEKKLQFE 444 (1195)
T ss_pred HHHHHHHhhh--hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3444555444 8999999999999999999999999999998654 4566777777665544
No 89
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=82.26 E-value=1.2e+02 Score=36.29 Aligned_cols=163 Identities=20% Similarity=0.286 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----------hhh
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEE-------LETQLAF----------ANK 452 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~E-------LQ~QL~~----------aN~ 452 (594)
++..+.+++..|++.|+.++......-+.|+.++...+..+.+|.-+...++- |+.-.+. -|.
T Consensus 163 ~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~we~ 242 (739)
T PF07111_consen 163 ALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAWEP 242 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHHHH
Confidence 56667779999999999999999888999999999999888888766554432 1111111 145
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH---HHHHHh---------------hHHHHHHHHHHHHhhHHHHHHHH
Q 007664 453 SKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQ---LALANK---------------SKQAAEEEVKSAKSKKEAAESRL 514 (594)
Q Consensus 453 sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~---L~la~e---------------S~s~~~eeL~a~~a~kkelEsqL 514 (594)
.+..+..-|.....++..|-.-+++++.=+..+ |.++.+ +..-...=|.+-..+.=.|-.||
T Consensus 243 Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~d~Le~e~~~K~q~LL~~WREKVFaLmVQL 322 (739)
T PF07111_consen 243 EREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPSDPLEPEFSRKCQQLLSRWREKVFALMVQL 322 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777766666666666544443 333321 11111122334466666677676
Q ss_pred HHH----HHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHH
Q 007664 515 RAV----EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE 555 (594)
Q Consensus 515 e~~----EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEee 555 (594)
+.- ...+..|+.+|.+||.++... +.+...=-|.|++.
T Consensus 323 kaQeleh~~~~~qL~~qVAsLQeev~sq---~qEqaiLq~SLqDK 364 (739)
T PF07111_consen 323 KAQELEHRDSVKQLRGQVASLQEEVASQ---QQEQAILQHSLQDK 364 (739)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHH
Confidence 664 445677999999999999854 33333334444443
No 90
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=81.91 E-value=65 Score=32.99 Aligned_cols=39 Identities=31% Similarity=0.392 Sum_probs=17.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
++++-+..+.++.+.+.+.++-=|..|-..|+-||..+.
T Consensus 144 ~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~ 182 (205)
T KOG1003|consen 144 EELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLE 182 (205)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhH
Confidence 344444444444444444444444444444444444433
No 91
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.91 E-value=1.3e+02 Score=36.41 Aligned_cols=182 Identities=21% Similarity=0.315 Sum_probs=82.5
Q ss_pred hhhhhHhhHhHHHHHHHhhcccc-hHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHH
Q 007664 57 VVNDSVKTLTEKLSAALLNVSAK-EDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKEC 135 (594)
Q Consensus 57 ~~~~~~k~LnekLs~al~~~~~K-d~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeC 135 (594)
-|...+.....||.+...+|..- -.-++.-..+..+ .-+++..++.||...-..+-. +...+-.+
T Consensus 14 ~L~~ele~~~~~l~~~~~~i~~fwspElkrer~~rke-------e~a~l~~~k~qlr~~q~e~q~-------~~~ei~~L 79 (775)
T PF10174_consen 14 RLRRELERKQSKLGSSMNSIKTFWSPELKRERALRKE-------EAAELSRLKEQLRVTQEENQK-------AQEEIQAL 79 (775)
T ss_pred HHHHHHHHHHhHHHHHHHhHhcccchhhHHHHHHHHH-------HHHHHHhHHHHHHHHHhhHHH-------HHHHHHHH
Confidence 35566667778888888877541 1222222223222 234566677777655544443 33333333
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHH---HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHH
Q 007664 136 VRQLRQAREEQEQRIQETVSKQNLEWESKKSELE---SKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLEL 212 (594)
Q Consensus 136 mrQLr~~rEEqEqki~eav~kks~e~e~~~~elE---~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~ 212 (594)
=-.||..++-. +++.-+-+.+.+++.+.. ++ ..+..+.+..+.+..+. ..|...++.++-.+..++.++
T Consensus 80 qeELr~q~e~~--rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~El-----~~lr~~lE~~q~~~e~~q~~l 151 (775)
T PF10174_consen 80 QEELRAQRELN--RLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQREL-----ERLRKTLEELQLRIETQQQTL 151 (775)
T ss_pred HHHHHHhhHHH--HHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 33332222211 233333333444444443 32 22222333333222222 233444444444444444444
Q ss_pred HHHHhhhhHhHHhhh---hhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhhc
Q 007664 213 LSLVKELELRIVERD---LSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKA 264 (594)
Q Consensus 213 ~~l~kELeiR~~Ere---~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK~ 264 (594)
.....+++.-.+..+ .+. ++..-+|. -.+-|+-+|+.|.+|..+.-.+
T Consensus 152 ~~~~eei~kL~e~L~~~g~~~---~~~~~~~~-~~~~~~~~e~~~~~le~lle~~ 202 (775)
T PF10174_consen 152 DKADEEIEKLQEMLQSKGLSA---EAEEEDNE-ALRRIREAEARIMRLESLLERK 202 (775)
T ss_pred HHHHHHHHHHHHHHhhcCCcc---cchhhhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443333221 111 22222222 3346889999999999877554
No 92
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.75 E-value=68 Score=33.14 Aligned_cols=50 Identities=32% Similarity=0.445 Sum_probs=27.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664 408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (594)
Q Consensus 408 lEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~ 457 (594)
.+-++.+|+.-|...+.+.+..+..|.+.+.....|..++..+......+
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~L 52 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEEL 52 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666655555555555544444434333
No 93
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.58 E-value=1.1e+02 Score=35.23 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhhhhhHHHH
Q 007664 194 LCSKLEAAEKQNSALKLELL 213 (594)
Q Consensus 194 L~~rLes~EKen~sLkyE~~ 213 (594)
+...|+.++.+...+.-+|.
T Consensus 110 ~~~~l~~~e~~~~~i~~~l~ 129 (569)
T PRK04778 110 IESLLDLIEEDIEQILEELQ 129 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 94
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.44 E-value=79 Score=33.68 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=19.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
.+|..+..+.......+.....++..|..++..|..+|+
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~ 247 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIE 247 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555555555544
No 95
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=81.33 E-value=1e+02 Score=34.79 Aligned_cols=64 Identities=17% Similarity=0.334 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~ 449 (594)
.+..+++.....+..-..+..+|+.+...++..+.....++-.+...+.+.+.++.++-..|+-
T Consensus 42 q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 42 QIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 4555666655555555555555555555555555555555555555555555555554444444
No 96
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=80.82 E-value=66 Score=32.35 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhH
Q 007664 506 KKEAAESRLRAVEAEMETLRSKV----ISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561 (594)
Q Consensus 506 ~kkelEsqLe~~EaEa~~L~~KV----~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~ 561 (594)
+...++..+...+..+..|..++ .++-.++..|+--+.++...|..|..++.+..+
T Consensus 126 kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 126 KLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444 455677888888888999999999999888754
No 97
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.56 E-value=97 Score=37.66 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHH
Q 007664 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562 (594)
Q Consensus 510 lEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e 562 (594)
+-+++......+..++.|+.+|++..+-|-.--+=..+|-.+|+-++..+++|
T Consensus 860 l~~~~k~~~nli~~ltEk~~sl~~qadse~l~ka~~~~k~~nl~lki~s~kqe 912 (970)
T KOG0946|consen 860 LQEKIKFGNNLIKELTEKISSLEAQADSETLSKALKTVKSENLSLKIVSNKQE 912 (970)
T ss_pred HHHHhhhhhhHHHHHhhhhhhHHHhhcchHHHHHHHHhhcccchhcccchhhh
Confidence 34456666678889999999999887777444344445556666666666543
No 98
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=79.07 E-value=77 Score=32.11 Aligned_cols=46 Identities=26% Similarity=0.362 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 401 LEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 401 LEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
|+.++....+....++..|...+.++.....+...+...+.+.+.+
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~ 128 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQR 128 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 3333333333333333344433333333333333333333333333
No 99
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=78.64 E-value=29 Score=29.16 Aligned_cols=45 Identities=36% Similarity=0.439 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (594)
Q Consensus 493 ~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek 537 (594)
++...++|..+.+..-.++++|.+++.-...|..+|..|+.+++.
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777788889999999999999999999999988875
No 100
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=78.59 E-value=0.65 Score=55.29 Aligned_cols=161 Identities=20% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 007664 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475 (594)
Q Consensus 396 ~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl 475 (594)
.....++.....+.++...|...|.+...+++.....-+.+...+.+|..+++.++.+.+.++......+....++...|
T Consensus 398 ~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~l 477 (859)
T PF01576_consen 398 AERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQL 477 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555556666666666666666666666677777777777777777776666665555555554444
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHH
Q 007664 476 SVVEAEMKTQLALANKSKQAAEEEVKSAKSKK-EAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD 554 (594)
Q Consensus 476 ~~~eaEik~~L~la~eS~s~~~eeL~a~~a~k-kelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEe 554 (594)
.-+++.+.- ......-..-+|..+..++ +.+..+-+.++.--+.+...|..|+..++.|+-.-.++..--++||.
T Consensus 478 eE~E~~l~~----~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~ 553 (859)
T PF01576_consen 478 EEAEDALEA----EEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLES 553 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444443321 1111111111222222221 22333333333334444667777777787777777766666666766
Q ss_pred HHhhhh
Q 007664 555 ELSKVK 560 (594)
Q Consensus 555 eLsr~k 560 (594)
+|.-..
T Consensus 554 ~l~eLe 559 (859)
T PF01576_consen 554 DLNELE 559 (859)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 665543
No 101
>PRK01156 chromosome segregation protein; Provisional
Probab=78.22 E-value=1.6e+02 Score=35.26 Aligned_cols=174 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEM-----------------------DLKESQRRLETSQNQLKEAELKLEE 442 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~-----------------------aL~~~~~qle~S~~~L~Eae~kL~E 442 (594)
.+..++..+..++..|+.++.+...=+..+.. .+..+..++.....++..++..+.+
T Consensus 526 ~l~~~l~~~~~~l~~le~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~~l~~~l~~ 605 (895)
T PRK01156 526 SARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQE 605 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHH--------------HHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHH
Q 007664 443 LET--------------QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKE 508 (594)
Q Consensus 443 LQ~--------------QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kk 508 (594)
|.. +|...-.........+.....+...+...+.-+..+|. .+.............+......+.
T Consensus 606 le~~~~~~~~~~~~~~~~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~-~l~~~~~~~~~~~~~~~~~~~~~~ 684 (895)
T PRK01156 606 IEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIA-EIDSIIPDLKEITSRINDIEDNLK 684 (895)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 509 AAESRLRAVEAEMETLRSKVISLEDE---VEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 509 elEsqLe~~EaEa~~L~~KV~sLE~E---IekERalS~E~~aKC~~LEeeLsr~k 560 (594)
.++.++..+...+..+..++..+... +..+..--.....+...++.-+....
T Consensus 685 ~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~~~~~~~l~ 739 (895)
T PRK01156 685 KSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKIKKAIGDLK 739 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 102
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.10 E-value=1.3e+02 Score=34.05 Aligned_cols=113 Identities=21% Similarity=0.290 Sum_probs=74.2
Q ss_pred hhhHhhHhHHHHHHHhhcccchHHHHHHHHHHHHHh----h----------hHHHhHHHHHHHHHHHHHHhhhhhhhhhh
Q 007664 59 NDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAV----S----------GWEKAENELSTLKQQLKAASQKNSALENR 124 (594)
Q Consensus 59 ~~~~k~LnekLs~al~~~~~Kd~lvkqh~KvaeEAv----~----------GwEKae~E~~~lK~~Le~~~~~~~~~e~r 124 (594)
++....|.+-.+.-+-++ +++.--|.|-.--+. + |-+--+.+|-.|..|||+-..+.-+.+.-
T Consensus 244 Edq~~~LsE~~~k~~q~L---e~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~ 320 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQEL---EKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSA 320 (593)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence 567788888777766655 444444444332222 1 56667889999999999887776544332
Q ss_pred hhch------h-hHH-HHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHH
Q 007664 125 VSHL------D-GAL-KECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVD 174 (594)
Q Consensus 125 v~hL------D-~AL-KeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e 174 (594)
+.-+ | ..+ --|-|-+--..+-+-++|.|.--.--+|+++++-+-+.=|+|
T Consensus 321 ~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAE 378 (593)
T KOG4807|consen 321 LRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAE 378 (593)
T ss_pred HhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2211 1 112 248787878888888888888888888888888776665554
No 103
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.76 E-value=60 Score=30.19 Aligned_cols=30 Identities=23% Similarity=0.456 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664 398 TAELEEELENMRAEKSELEMDLKESQRRLE 427 (594)
Q Consensus 398 vaeLEeKleklEaEK~eLE~aL~~~~~qle 427 (594)
+..|+.++..+.......+..+...+..+.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~ 34 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLREDLE 34 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444433333333333333333
No 104
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=77.74 E-value=44 Score=39.40 Aligned_cols=143 Identities=19% Similarity=0.194 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
.++.+-|+++-||.-|-+.++--...+.+||..+.+-+++|-+....|+--=-....|.+|.=..=...-.+-.++-+++
T Consensus 115 RLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 115 RLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHH
Confidence 34445556666777777676666666678888887777777766665543323334454442222223333444445788
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHH--H-Hhh-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 007664 466 AARGVAESKLSVVEAEMKTQLAL--A-NKS-KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKV 528 (594)
Q Consensus 466 ~~~~~lEskl~~~eaEik~~L~l--a-~eS-~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV 528 (594)
.++.+.|.|+...+.+|...-.+ . -.. .-+|++.|++.....-.|..|......|+..|..+.
T Consensus 195 keq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~l 261 (861)
T KOG1899|consen 195 KEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTL 261 (861)
T ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHHHHHHH
Confidence 88888899999888876633211 0 011 126778888888888888888888888877776654
No 105
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.19 E-value=63 Score=30.10 Aligned_cols=74 Identities=24% Similarity=0.331 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007664 394 LIHRTAELEEELEN-------MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA 466 (594)
Q Consensus 394 ~~~qvaeLEeKlek-------lEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~ 466 (594)
+..+++.|+.-++. +-.++++|.-.+.-.+.+....-.++.+++.++.|+..+|+.-.-.+..++..+..++.
T Consensus 14 l~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 14 LQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555444 44555566666665555555555555555555555555555433333333333333333
Q ss_pred h
Q 007664 467 A 467 (594)
Q Consensus 467 ~ 467 (594)
+
T Consensus 94 d 94 (107)
T PF09304_consen 94 D 94 (107)
T ss_dssp H
T ss_pred h
Confidence 3
No 106
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=77.00 E-value=1.4e+02 Score=33.81 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM 461 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~v 461 (594)
..+..++.+++.++.++....-+...|+..|......+....++|.+....+.++..++...|..+..++.+-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3577777788888888888888888888888888888888888888888888888888777777777765554
No 107
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=76.42 E-value=1.2e+02 Score=32.74 Aligned_cols=41 Identities=27% Similarity=0.366 Sum_probs=23.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek 537 (594)
..++..+..+..+++.++..+...++....++.-+..+|..
T Consensus 217 ~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 217 LQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555556665566666555555555555553
No 108
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=76.22 E-value=53 Score=35.09 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007664 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (594)
Q Consensus 385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~ 464 (594)
..+..++..+..+...+...++.++.+..++...+...+.+.......-...=...+.++.++....+..+.++.++.-+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888888888888888777777776665555555666777777777777667666666554
Q ss_pred HHhh
Q 007664 465 IAAR 468 (594)
Q Consensus 465 ~~~~ 468 (594)
....
T Consensus 126 ~~~L 129 (314)
T PF04111_consen 126 SNQL 129 (314)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 109
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=75.54 E-value=1.3e+02 Score=32.71 Aligned_cols=86 Identities=20% Similarity=0.297 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~ 468 (594)
-..+.+.+++..-+.|+..|+-+....--+|.+-.=-++..++.|.-++-.+-|+ ..--+.-+.+|....+++
T Consensus 144 d~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~-------e~m~qne~~kv~k~~~Kq 216 (305)
T PF14915_consen 144 DNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI-------EHMYQNEQDKVNKYIGKQ 216 (305)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHH
Confidence 3445555555555555555554444443344333333444444444443333333 333444455666667777
Q ss_pred hhhhhhhhhHHHH
Q 007664 469 GVAESKLSVVEAE 481 (594)
Q Consensus 469 ~~lEskl~~~eaE 481 (594)
.-++.+|+-++.|
T Consensus 217 es~eERL~QlqsE 229 (305)
T PF14915_consen 217 ESLEERLSQLQSE 229 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877777
No 110
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.24 E-value=1.2e+02 Score=32.52 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=15.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 500 VKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 500 L~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
|+...++......++..+..++..+...+..|...|+
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444
No 111
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.23 E-value=1.9e+02 Score=34.63 Aligned_cols=140 Identities=21% Similarity=0.223 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhhHHHHHHHHHH
Q 007664 393 VLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF---------ANKSKQAVEVEMKA 463 (594)
Q Consensus 393 ~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~---------aN~sk~~~e~~ve~ 463 (594)
.++.++..++.++..+...+..+++-|...-.++..-++.+++....+.++---..- .+.....++..+..
T Consensus 169 ~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~d 248 (716)
T KOG4593|consen 169 ELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKD 248 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHH
Confidence 345677788888888888888888888877777777777777766555554322221 11222223233333
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHhhH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007664 464 AIAARGVAESKLSVVEAEMKTQLALANKSK---QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLED 533 (594)
Q Consensus 464 ~~~~~~~lEskl~~~eaEik~~L~la~eS~---s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~ 533 (594)
-......++..+..+-.|.+..-+. +.+. .+..+.|.+.-.....+.++...++-|...|..+..+-|.
T Consensus 249 qlqel~~l~~a~~q~~ee~~~~re~-~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~ 320 (716)
T KOG4593|consen 249 QLQELEELERALSQLREELATLREN-RETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWER 320 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2333333333333333333321111 1111 2333334444444555666777777776666666554443
No 112
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=74.96 E-value=1.4e+02 Score=33.02 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 510 AESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 510 lEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
+..++..+++++..+..++..|..++.
T Consensus 315 l~~~l~~~~~~~~~l~~~~~~l~~~~~ 341 (498)
T TIGR03007 315 LQIELAEAEAEIASLEARVAELTARIE 341 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555443
No 113
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=74.31 E-value=21 Score=30.77 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhh
Q 007664 193 DLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRK 263 (594)
Q Consensus 193 ~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK 263 (594)
+....++.+.|||-.||..++-+.+-|. ..+-...+.+.|+..+-=--+..|--|+++++.+++.
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~------~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ------KLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788999999999998888887 3444567777888777555677788888888877765
No 114
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.37 E-value=2.3e+02 Score=34.84 Aligned_cols=7 Identities=43% Similarity=0.638 Sum_probs=4.2
Q ss_pred cccccch
Q 007664 344 VDINLMD 350 (594)
Q Consensus 344 ~di~LMD 350 (594)
..++|||
T Consensus 291 ~~~n~~~ 297 (980)
T KOG0980|consen 291 EEMNLPD 297 (980)
T ss_pred ccccccc
Confidence 4566665
No 115
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=73.06 E-value=1.8e+02 Score=33.43 Aligned_cols=71 Identities=24% Similarity=0.265 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhhh--HhHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhh
Q 007664 193 DLCSKLEAAEKQNSALKLELLSLVKELE--LRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRK 263 (594)
Q Consensus 193 ~L~~rLes~EKen~sLkyE~~~l~kELe--iR~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK 263 (594)
.|..+...+.|...+-.+.+----..|+ +.+.|.+|+.=.-=+.+=-|++.=.-+.+|+.++..|..++.+
T Consensus 140 ~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~ 212 (560)
T PF06160_consen 140 ELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMED 212 (560)
T ss_pred HHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555554443333333 4466666666555566666777777777777777777777665
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=72.94 E-value=2e+02 Score=33.94 Aligned_cols=47 Identities=23% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 511 ESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 511 EsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
.+.|-.++.++..|..-|..++.-..+||.-| .+....||.++..+.
T Consensus 284 ~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~---~~qI~~le~~l~~~~ 330 (629)
T KOG0963|consen 284 GSVLNQKDSEIAQLSNDIERLEASLVEEREKH---KAQISALEKELKAKI 330 (629)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444456666666666666666666666433 333444555544443
No 117
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.41 E-value=2.6e+02 Score=34.99 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007664 245 KKLAKVEAECLRLKAVV 261 (594)
Q Consensus 245 KKiakLEaECqRLr~l~ 261 (594)
.-|.-|||||-+||.=.
T Consensus 205 ~eLddleae~~klrqe~ 221 (1195)
T KOG4643|consen 205 NELDDLEAEISKLRQEI 221 (1195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45777888888888644
No 118
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.26 E-value=1.4e+02 Score=34.14 Aligned_cols=13 Identities=15% Similarity=0.447 Sum_probs=5.7
Q ss_pred HHHHHHHhhHHHH
Q 007664 523 TLRSKVISLEDEV 535 (594)
Q Consensus 523 ~L~~KV~sLE~EI 535 (594)
.+-.+|.-|+++|
T Consensus 432 s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 432 SKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 119
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=71.51 E-value=3e+02 Score=35.25 Aligned_cols=137 Identities=18% Similarity=0.250 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 007664 395 IHRTAELEEELENMRAEKSELEMDLKESQR----RLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGV 470 (594)
Q Consensus 395 ~~qvaeLEeKleklEaEK~eLE~aL~~~~~----qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~ 470 (594)
..++..++.+++.++.....|+.-+...+. .+...-..+..+...+.+++.++..+.........++..+.++...
T Consensus 229 ~~~~~~~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1353)
T TIGR02680 229 LEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEA 308 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666666666665555444332211 2333334445555556666666666666666666666666666666
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 471 AESKLSVVEAEMKTQLALANKSKQAA--EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 471 lEskl~~~eaEik~~L~la~eS~s~~--~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
++.++.-++.++..+ +.| .++ .++|.......+.+...+......+.....+...+..+++
T Consensus 309 le~~~~~l~~~~~~l----~~~-~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~e~~~~~~~ 371 (1353)
T TIGR02680 309 LEREADALRTRLEAL----QGS-PAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLD 371 (1353)
T ss_pred HHHHHHHHHHHHHHh----cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555554421 111 111 2444444444455555555555555544444444444443
No 120
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=70.24 E-value=1.4e+02 Score=30.91 Aligned_cols=91 Identities=32% Similarity=0.338 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhh
Q 007664 393 VLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAE 472 (594)
Q Consensus 393 ~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lE 472 (594)
.+-.+..+|+.+|..++.+......+|...+......--.++.++.....|...-..+...+..+..........+..|+
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le 81 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLE 81 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888888888888888887777766666677777777777777766666666666655555455555666
Q ss_pred hhhhhHHHHHH
Q 007664 473 SKLSVVEAEMK 483 (594)
Q Consensus 473 skl~~~eaEik 483 (594)
.++.-+..+|.
T Consensus 82 ~e~~e~~~~i~ 92 (246)
T PF00769_consen 82 QELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 121
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.87 E-value=38 Score=38.39 Aligned_cols=55 Identities=27% Similarity=0.471 Sum_probs=46.0
Q ss_pred HHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHH
Q 007664 98 EKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQE 152 (594)
Q Consensus 98 EKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~e 152 (594)
+..-.|+.+|++.+..+...+-.+|+|...++.-+|.|..||-.-||+..--|-+
T Consensus 357 e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 357 ELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455678888888888888899999999999999999999999988776655443
No 122
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=69.03 E-value=3.1e+02 Score=34.49 Aligned_cols=72 Identities=24% Similarity=0.406 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
-+.+..++..++..+......+.+++..|...+.++...+..+..+...+.-.+-.+...+...+.+..+..
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555555555555555555555555555555555555555555555555554444
No 123
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=68.83 E-value=1.4e+02 Score=31.02 Aligned_cols=67 Identities=18% Similarity=0.314 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 494 s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
..|+.++.++..+|+.....|+....++.+|-.-|..++.+-.+-+..-...-.-|..|.+++-++.
T Consensus 35 ~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 35 EEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777888888888888888887777777777777655433333333333444445444444
No 124
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=68.69 E-value=66 Score=27.06 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=10.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMET 523 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~ 523 (594)
...|+.+.....+|..++..++.+++.
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444333
No 125
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=68.57 E-value=1.5e+02 Score=30.49 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhHHHHHHHHhhc
Q 007664 521 METLRSKVISLEDEVEKERALS 542 (594)
Q Consensus 521 a~~L~~KV~sLE~EIekERalS 542 (594)
+..|+..|..|-++|..||.-.
T Consensus 133 ~~~l~~e~erL~aeL~~er~~~ 154 (202)
T PF06818_consen 133 LGSLRREVERLRAELQRERQRR 154 (202)
T ss_pred chhHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555555555433
No 126
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.28 E-value=87 Score=31.81 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007664 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (594)
Q Consensus 385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~ 456 (594)
.+++.-+..+..+++.|+.++..+..+-. .-.++.+..+..+.....+++.+..+|+.||..+......
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666677777666666654422 2223333444444444444444444444444444433333
No 127
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.50 E-value=77 Score=35.91 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=70.5
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHH---hhHH---HHHHHHH----HHHhhHHHHHH-------------------H
Q 007664 463 AAIAARGVAESKLSVVEAEMKTQLALAN---KSKQ---AAEEEVK----SAKSKKEAAES-------------------R 513 (594)
Q Consensus 463 ~~~~~~~~lEskl~~~eaEik~~L~la~---eS~s---~~~eeL~----a~~a~kkelEs-------------------q 513 (594)
.|+.-...++.||.|++-++..+-+-++ +-++ ..+.+|. +++..+++-+. .
T Consensus 212 ~mee~r~di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~ 291 (502)
T KOG0982|consen 212 GMEEERIDIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKK 291 (502)
T ss_pred hhhchhhhHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5666677888888888887765433221 1111 2222222 22333333322 2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHH
Q 007664 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 514 Le~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~ 566 (594)
-+....+++.+..++-.|+.+...=|..-..+.+-|.+|.++.+|....++..
T Consensus 292 eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~l 344 (502)
T KOG0982|consen 292 EREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEAL 344 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 23366778889999999999999999999999999999999999998887775
No 128
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.71 E-value=2.5e+02 Score=33.70 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 007664 389 AELEVLIHRTAELEEE-LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeK-leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~ 467 (594)
.=++.+.+-+.-|.+. +.+...=+.+++.-....+.+.+ .|+ .++.+++...+.+...-+.+..+++.+..+
T Consensus 536 E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e---~Ql----~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~ 608 (717)
T PF10168_consen 536 ECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKE---QQL----KELQELQEERKSLRESAEKLAERYEEAKDK 608 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666665 45555444445544443333333 222 344555666666666677778888888888
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 468 RGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 468 ~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
+..|..|+..+=.- +....-.-+.++ ..+..+.+.+..++..+.+-++.++.|+...+..++
T Consensus 609 Qe~L~~R~~~vl~~----l~~~~P~LS~AE---r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 609 QEKLMKRVDRVLQL----LNSQLPVLSEAE---REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHH----HhccCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88877776633222 211111112222 122333444555555555555666666666555554
No 129
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.58 E-value=99 Score=32.50 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=33.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhh
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSK 558 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr 558 (594)
..+|...++++++...+|+.++.|.-.|..+...|.+++. .+..++.+|+..+.-
T Consensus 155 ~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~-------~L~~r~~ELe~~~El 209 (290)
T COG4026 155 LKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY-------DLKKRWDELEPGVEL 209 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH-------HHHHHHHHhcccccc
Confidence 3445555666666666677777776666666666666665 455555566555443
No 130
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.48 E-value=89 Score=32.84 Aligned_cols=81 Identities=26% Similarity=0.282 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 007664 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475 (594)
Q Consensus 396 ~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl 475 (594)
....++.+|++.+..||.+|-..|.+.+..++.-+.+|+. |.-.+...|+....+..++.....+..+|+..|
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~-------le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKR-------LEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 3555666777777777777776666666666655555544 334444444445555556666667777888888
Q ss_pred hhHHHHHH
Q 007664 476 SVVEAEMK 483 (594)
Q Consensus 476 ~~~eaEik 483 (594)
++++-+.-
T Consensus 208 El~e~~~i 215 (290)
T COG4026 208 ELPEEELI 215 (290)
T ss_pred cchHHHHH
Confidence 88777644
No 131
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.25 E-value=2.7e+02 Score=32.71 Aligned_cols=174 Identities=21% Similarity=0.264 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhh
Q 007664 388 KAELEVLIHRTAELEEE----------LENMRAEKSELEMDLKESQRRLETSQNQLKEA----ELKLEELETQLAFANKS 453 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeK----------leklEaEK~eLE~aL~~~~~qle~S~~~L~Ea----e~kL~ELQ~QL~~aN~s 453 (594)
+.|++.++.++.+|.++ +++|-.|+.+|...|..++-+++....-+-+. +.--.+++.++-.+|+.
T Consensus 307 EeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 307 EEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766 55677777777777777776666554443322 22334555666566666
Q ss_pred HHHHHHH-HHHHHH-hh-------------hhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH--------------H
Q 007664 454 KQAVEVE-MKAAIA-AR-------------GVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA--------------K 504 (594)
Q Consensus 454 k~~~e~~-ve~~~~-~~-------------~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~--------------~ 504 (594)
...+-.- ++-..+ .+ .+..-.+|.+-.||...+.-+.+-+.-++..++-+ .
T Consensus 387 ~~~i~l~~~~~~~n~~~~pe~~~~~~~d~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~ 466 (581)
T KOG0995|consen 387 IRRIKLGIAENSKNLERNPERAATNGVDLKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIE 466 (581)
T ss_pred HHHHHHHHHHHhccCCcCCccCccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655444 221111 11 13344455666677766665543332222222222 2
Q ss_pred hhHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHhhc----HHHHHHhHHHHHHHhhhhH
Q 007664 505 SKKEAAESRLRAVEAEME----TLRSKVISLEDEVEKERALS----EENIANFQKSKDELSKVKQ 561 (594)
Q Consensus 505 a~kkelEsqLe~~EaEa~----~L~~KV~sLE~EIekERalS----~E~~aKC~~LEeeLsr~k~ 561 (594)
.+...+++..+....+++ .-+.-+..||.++..+...+ .+........+-++.++.+
T Consensus 467 ~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~~~~ 531 (581)
T KOG0995|consen 467 LELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDRMVA 531 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333332222222 23344666777777666554 3444455555555555543
No 132
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=66.22 E-value=1.2e+02 Score=28.55 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=11.6
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhHHH
Q 007664 470 VAESKLSVVEAEMKTQLALANKSKQA 495 (594)
Q Consensus 470 ~lEskl~~~eaEik~~L~la~eS~s~ 495 (594)
.+...+.....|+.+.-.........
T Consensus 105 ~~~~~~k~~kee~~klk~~~~~~~tq 130 (151)
T PF11559_consen 105 SLEAKLKQEKEELQKLKNQLQQRKTQ 130 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444443333334
No 133
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=66.19 E-value=1.9 Score=50.13 Aligned_cols=82 Identities=29% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 007664 400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL-EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVV 478 (594)
Q Consensus 400 eLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL-~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~ 478 (594)
+|+..+..+.....+++..+...+.++...+..|.....++ .|....+..+++....+++++..+......++.++..+
T Consensus 111 ele~~~~~l~~~~~~le~el~~~~e~~~~~k~~le~~~~~L~~E~~~~~~e~~~~~~~l~~~~~~l~~~~~~~e~~~~~l 190 (722)
T PF05557_consen 111 ELEARLKQLEEREEELEEELEEAEEELEQLKRKLEEEKRRLQREKEQLLEEAREEISSLKNELSELERQAENAESQIQSL 190 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444443333333 33344444445545555555555444444444444444
Q ss_pred HHH
Q 007664 479 EAE 481 (594)
Q Consensus 479 eaE 481 (594)
+.+
T Consensus 191 ~~e 193 (722)
T PF05557_consen 191 ESE 193 (722)
T ss_dssp ---
T ss_pred HHH
Confidence 443
No 134
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=65.50 E-value=2.6e+02 Score=32.24 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007664 410 AEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVE 460 (594)
Q Consensus 410 aEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ 460 (594)
.||.+++..|...+.-+..++..|.+....-+-||.||.-.+..--.+..+
T Consensus 383 LEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEr 433 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQER 433 (527)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHH
Confidence 445555555555555555555555555544455555555444444444333
No 135
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=65.29 E-value=3.1e+02 Score=33.14 Aligned_cols=154 Identities=15% Similarity=0.197 Sum_probs=90.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
.++.+-+.+.++|-+|-.+|.+.+-.-+-.|--|. ..++..+.+|++++.+-.+|-.++...--+--+-=.-|-++.
T Consensus 577 ear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R---~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl 653 (961)
T KOG4673|consen 577 EARERESMLVQQVEDLRQTLSKKEQQAARREDMFR---GEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETL 653 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 56678888999999999999988776666665554 888899999999999999887776553322211111111111
Q ss_pred Hhhh--------hhh-----------hhhhhHHHHHHHHHHHHH-----hh-H-------HHHHHHHHHHHhhHHHHHHH
Q 007664 466 AARG--------VAE-----------SKLSVVEAEMKTQLALAN-----KS-K-------QAAEEEVKSAKSKKEAAESR 513 (594)
Q Consensus 466 ~~~~--------~lE-----------skl~~~eaEik~~L~la~-----eS-~-------s~~~eeL~a~~a~kkelEsq 513 (594)
.++. .|. .-|...++|-..+|.+-- .+ . ++.-..|....-.....+-+
T Consensus 654 ~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllraE~~~l~~~le~e~nr~~~~~~e 733 (961)
T KOG4673|consen 654 SKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLRAEQGQLSKSLEKERNRAAENRQE 733 (961)
T ss_pred hhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1111 111 111122333333333210 00 1 12222222223333344556
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhc
Q 007664 514 LRAVEAEMETLRSKVISLEDEVEKERALS 542 (594)
Q Consensus 514 Le~~EaEa~~L~~KV~sLE~EIekERalS 542 (594)
+-.++.|+.+|...+..|+.++.++|..+
T Consensus 734 ~~~~qeE~~~l~~r~~~le~e~r~~k~~~ 762 (961)
T KOG4673|consen 734 YLAAQEEADTLEGRANQLEVEIRELKRKH 762 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999988887655
No 136
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=65.23 E-value=3.7e+02 Score=33.91 Aligned_cols=55 Identities=24% Similarity=0.429 Sum_probs=32.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 499 eL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
.+.........++..++.++-....+...|.++ +++++ |. ..+..+.+.++...+
T Consensus 808 ~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~-k~-----k~~~~~~~~e~~e~~ 862 (1141)
T KOG0018|consen 808 RVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEK-KN-----KSKFEKKEDEINEVK 862 (1141)
T ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHH-HH-----HHHHHHHHHHHHHHH
Confidence 334445555555556666666666666666666 55555 33 566666666666554
No 137
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=64.81 E-value=27 Score=39.22 Aligned_cols=35 Identities=31% Similarity=0.527 Sum_probs=23.9
Q ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 382 ADESSIKAELEVLIHRTAELEEELENMRAEKSELE 416 (594)
Q Consensus 382 ~~~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE 416 (594)
..+.|...-.+.+..++..|+..++..+....+++
T Consensus 156 ~~~~p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~ 190 (475)
T PF10359_consen 156 GDNDPRRVQIELIQERLDELEEQIEKHEEKLGELE 190 (475)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 44557777777788888888777777665554443
No 138
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=63.27 E-value=1.3e+02 Score=32.52 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~EL 443 (594)
-..|+..+..++++|+.++..+-.|..+|...|..++..-......|.+++.|-.|.
T Consensus 232 QQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~ 288 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAEC 288 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777788877777777777777777655544444444444444443333
No 139
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.17 E-value=2.3e+02 Score=30.86 Aligned_cols=159 Identities=23% Similarity=0.318 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH----HHHHhhhhhh
Q 007664 398 TAELEEELENMRAEKSELEMDLKESQRR-LETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK----AAIAARGVAE 472 (594)
Q Consensus 398 vaeLEeKleklEaEK~eLE~aL~~~~~q-le~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve----~~~~~~~~lE 472 (594)
+-.|..|+.+|..||.+|+..|..=+.. .......+..++....-+|..|.-....|..+++-++ .++++.+.
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~K-- 185 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWK-- 185 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--
Confidence 3567788999999999999998754432 3455566666666666778888888888888888777 33444332
Q ss_pred hhhhhHHHHHHHH---HHHHH---hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH--------HHHH
Q 007664 473 SKLSVVEAEMKTQ---LALAN---KSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE--------VEKE 538 (594)
Q Consensus 473 skl~~~eaEik~~---L~la~---eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E--------IekE 538 (594)
++.-+.+|-..+ |+-+- -|-.... ........-..+.+++..+..|+..|+..+..-+.+ +++|
T Consensus 186 -qm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~-~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~ee 263 (310)
T PF09755_consen 186 -QMDKLEAEKRRLQEKLEQPVSAPPSPRDTV-NVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEE 263 (310)
T ss_pred -HHHHHHHHHHHHHHHHccccCCCCCcchHH-hhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333331111 22100 0000000 000001122336667777777777777766655544 4667
Q ss_pred HhhcHHHHHHhHHHHHHHhhhh
Q 007664 539 RALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 539 RalS~E~~aKC~~LEeeLsr~k 560 (594)
|.+-.++..--+.|.-++.|..
T Consensus 264 k~ireEN~rLqr~L~~E~erre 285 (310)
T PF09755_consen 264 KEIREENRRLQRKLQREVERRE 285 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888864
No 140
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=63.14 E-value=2.2e+02 Score=30.70 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHHHHH
Q 007664 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEV 569 (594)
Q Consensus 510 lEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~~e~ 569 (594)
++-.-..+.-++......|..||+.+..= ......|+.++.|.+.|+|-.|-.
T Consensus 79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~-------Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 79 LEKTRQKLSHDLQVKESQVNFLEGQLNSC-------KKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445566666667777888777633 235677888888888877754433
No 141
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.12 E-value=2.2e+02 Score=30.67 Aligned_cols=138 Identities=22% Similarity=0.296 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGV 470 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~ 470 (594)
+..+...+.++|+|+.|-=-.-+.|.-.=+.+.=+.+..++.|.+++.-+.++|.++.. ... +++..-.....
T Consensus 79 ~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e---K~~----elEr~K~~~d~ 151 (302)
T PF09738_consen 79 LRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE---KIR----ELERQKRAHDS 151 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHH
Confidence 44567888999999888544444444444445577788888888888888888877531 111 12222222234
Q ss_pred hhhhhhhHHHHHHHH--------HHHHH--------h-------hH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664 471 AESKLSVVEAEMKTQ--------LALAN--------K-------SK-----QAAEEEVKSAKSKKEAAESRLRAVEAEME 522 (594)
Q Consensus 471 lEskl~~~eaEik~~--------L~la~--------e-------S~-----s~~~eeL~a~~a~kkelEsqLe~~EaEa~ 522 (594)
|...+..+.++|+.. |.+-- . .. .....-|+.+ --=.|..||+.+-.|-+
T Consensus 152 L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~a--G~g~LDvRLkKl~~eke 229 (302)
T PF09738_consen 152 LREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESA--GDGSLDVRLKKLADEKE 229 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhccc--CCCCHHHHHHHHHHHHH
Confidence 444444455544322 00000 0 00 1111222222 01225567888888888
Q ss_pred HHHHHHHhhHHHHHH
Q 007664 523 TLRSKVISLEDEVEK 537 (594)
Q Consensus 523 ~L~~KV~sLE~EIek 537 (594)
.|...|..|..+++.
T Consensus 230 ~L~~qv~klk~qLee 244 (302)
T PF09738_consen 230 ELLEQVRKLKLQLEE 244 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888877753
No 142
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=62.64 E-value=1.8e+02 Score=29.38 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Q 007664 397 RTAELEEELENMRAEKSELEMDLK 420 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~ 420 (594)
=+--|++|+.+||.|+..-+..|.
T Consensus 5 ALK~LQeKIrrLELER~qAe~nl~ 28 (178)
T PF14073_consen 5 ALKNLQEKIRRLELERSQAEDNLK 28 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999988877777664
No 143
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.42 E-value=1.2e+02 Score=30.84 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007664 393 VLIHRTAELEEELENMR 409 (594)
Q Consensus 393 ~~~~qvaeLEeKleklE 409 (594)
.++.++..|+.++.+++
T Consensus 90 ~~~~rlp~le~el~~l~ 106 (206)
T PRK10884 90 SLRTRVPDLENQVKTLT 106 (206)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 144
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=61.92 E-value=22 Score=38.06 Aligned_cols=65 Identities=31% Similarity=0.373 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~ 468 (594)
.|.=+..+++.++.+ |...+.+|...+..|..++.++..|+.+++.+...+..++.++..+..+.
T Consensus 215 ~V~P~~~~l~~a~~~-------l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 215 EVEPKRQKLEEAEAE-------LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKL 279 (344)
T ss_dssp CCCHHHHHHHHCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344444444433 44455566666666777777777777777777777777766666655444
No 145
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=61.88 E-value=3.3e+02 Score=32.19 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=22.5
Q ss_pred HhhhhhhHHHHHHHhhhhHhHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHH
Q 007664 203 KQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKA 259 (594)
Q Consensus 203 Ken~sLkyE~~~l~kELeiR~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~ 259 (594)
.+++.++-.+.-++.++.+-..|++-+ +..|..||.-...|+.
T Consensus 22 ~e~a~~qqr~~qmseev~~L~eEk~~~--------------~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 22 EESAQWQQRMQQMSEEVRTLKEEKEHD--------------ISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 344445555555555555555554432 2235666666666544
No 146
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.73 E-value=1.3e+02 Score=32.16 Aligned_cols=50 Identities=40% Similarity=0.557 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
.+..++.++++++.|..++...|...+.+.+....++..++....+|+.+
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e 93 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE 93 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666655555555555554444444444433
No 147
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.44 E-value=3.3e+02 Score=32.16 Aligned_cols=40 Identities=28% Similarity=0.370 Sum_probs=25.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
|.+|+.-+-......+-|+.-++|.+-|+--|..||++++
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~e 211 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETE 211 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 4555555555555556666667777777777777777665
No 148
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=60.59 E-value=2.4e+02 Score=30.24 Aligned_cols=167 Identities=18% Similarity=0.202 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-H
Q 007664 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETS---QNQLKEAELKLEELETQLAFANKSKQAVEVEMK-A 463 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S---~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve-~ 463 (594)
...++.+..+.+++......+..+...+++.+...+...+.. ......+..+|+.|=++|+-.|.....-...+. .
T Consensus 21 eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~e 100 (309)
T PF09728_consen 21 EEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRARE 100 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666665555555444544333333222222 223344455555555555555543332222222 3
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHH
Q 007664 464 AIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRA----VEAEMETLRSKVISLEDEVEKER 539 (594)
Q Consensus 464 ~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~----~EaEa~~L~~KV~sLE~EIekER 539 (594)
-+.++.++..+....=..|...++-...-+.....+-..+..+.+.+-.|.+. ...-++.....|.++++.++..+
T Consensus 101 ee~kR~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~ 180 (309)
T PF09728_consen 101 EEEKRKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQ 180 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544333322333333333444433333332 22233344444555555555555
Q ss_pred hhcHHHHHHhHHHHH
Q 007664 540 ALSEENIANFQKSKD 554 (594)
Q Consensus 540 alS~E~~aKC~~LEe 554 (594)
..-..-..+++.+.+
T Consensus 181 ~~~~~e~~k~~~~~~ 195 (309)
T PF09728_consen 181 EEAEQEKEKAKQEKE 195 (309)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555555555
No 149
>PRK11281 hypothetical protein; Provisional
Probab=60.28 E-value=1.7e+02 Score=36.82 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (594)
Q Consensus 396 ~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~ 449 (594)
+++..++..+...+.........|...+.+.+..+.++.++..++.+++.+|+.
T Consensus 128 q~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 128 SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455555555555566666666666667777777777777777777777766
No 150
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=60.11 E-value=2.2e+02 Score=31.33 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=26.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 384 ~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
...++.|+|-+--++ |+---...|+|. .-|..++.........+-++...|..|+.+
T Consensus 193 ~~eWklEvERV~PqL-----Kv~~~~d~kDWR-~hleqm~~~~~~I~~~~~~~~~~L~kl~~~ 249 (359)
T PF10498_consen 193 PAEWKLEVERVLPQL-----KVTIRADAKDWR-SHLEQMKQHKKSIESALPETKSQLDKLQQD 249 (359)
T ss_pred HHHHHHHHHHHhhhh-----eeeccCCcchHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 446777887776665 221111124332 344444444444444444444444444444
No 151
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=59.24 E-value=3.1e+02 Score=31.08 Aligned_cols=96 Identities=22% Similarity=0.299 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEM-------DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~-------aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
+++-+..++--+...|+-.+.+|...++ .|......-+.-+.++.++...+..-|-.|.-.-+.-+.+..+|.
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~ 154 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555 333333333444444444444444444444445555666667777
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHH
Q 007664 463 AAIAARGVAESKLSVVEAEMKTQ 485 (594)
Q Consensus 463 ~~~~~~~~lEskl~~~eaEik~~ 485 (594)
-..+....|+.+..++.++-+-+
T Consensus 155 ~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 155 TLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777665543
No 152
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=58.56 E-value=3.4e+02 Score=31.33 Aligned_cols=81 Identities=14% Similarity=0.305 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHH
Q 007664 477 VVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDEL 556 (594)
Q Consensus 477 ~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeL 556 (594)
+=..+|.+-|---.+.-......|.....+++.|..+| +++...-..|+++--.|=..-......|-+++-=|
T Consensus 383 LEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlel-------kK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~L 455 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLEL-------KKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTL 455 (527)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 33344444443333333333344444444444444444 44444445555555555555556666677777666
Q ss_pred hhhhHHHH
Q 007664 557 SKVKQEIE 564 (594)
Q Consensus 557 sr~k~e~e 564 (594)
+++.-|++
T Consensus 456 skKeeeve 463 (527)
T PF15066_consen 456 SKKEEEVE 463 (527)
T ss_pred hhhHHHHH
Confidence 66655544
No 153
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.48 E-value=46 Score=35.70 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=41.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHH
Q 007664 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 504 ~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~ 566 (594)
.++.++.+.+|..-++|+..|+.+...+.+. =+..-||-.|+||.-++.--||+
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrED---------WIEEECHRVEAQLALKEARkEIk 127 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMRED---------WIEEECHRVEAQLALKEARKEIK 127 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778888888899999999888877554 23334999999999887655554
No 154
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=58.42 E-value=2.9e+02 Score=30.55 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 506 KKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (594)
Q Consensus 506 ~kkelEsqLe~~EaEa~~L~~KV~sLE~EI 535 (594)
.+..++.++..+......|...+..++.++
T Consensus 318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 347 (498)
T TIGR03007 318 ELAEAEAEIASLEARVAELTARIERLESLL 347 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 155
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.78 E-value=2.9e+02 Score=32.12 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664 423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (594)
Q Consensus 423 ~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~ 457 (594)
..+.+..+.+|..++....-+..+|..++..+..+
T Consensus 440 ~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~L 474 (518)
T PF10212_consen 440 YAECRALQKRLESAEKEKESLEEELKEANQNISRL 474 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555555554
No 156
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.24 E-value=1.1e+02 Score=32.62 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=20.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (594)
Q Consensus 408 lEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~ 449 (594)
.+.+|......+......++.....|...+.++.|++.+...
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e 232 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITE 232 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445444455555555555555555555555433
No 157
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=57.11 E-value=1.8e+02 Score=29.15 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=11.3
Q ss_pred CCCcccccCCCCCCCch
Q 007664 274 TPSSIYVGSFTDSQSDN 290 (594)
Q Consensus 274 ~~~s~~~~s~~d~~sd~ 290 (594)
.|.+||..++..+..+.
T Consensus 24 vPQ~PHF~pL~~~~e~~ 40 (190)
T PF05266_consen 24 VPQSPHFSPLQEFKEEL 40 (190)
T ss_pred CCCCCCChhhhcCcHHh
Confidence 57777777777655554
No 158
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=56.36 E-value=2.9e+02 Score=29.88 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 007664 423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLAL 488 (594)
Q Consensus 423 ~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~l 488 (594)
+.+...-...-.++..+.-|+.-+.+..+.....++.+|...-+++.++.+++.-+-.++.+.+..
T Consensus 33 ~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 33 RKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444455555555555555555555554444444444333
No 159
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=56.00 E-value=2.1e+02 Score=33.10 Aligned_cols=27 Identities=11% Similarity=0.353 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 510 AESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 510 lEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
-|.||-.|..-+-.|..++..-.++|+
T Consensus 485 YE~QLs~MSEHLasmNeqL~~Q~eeI~ 511 (518)
T PF10212_consen 485 YEEQLSMMSEHLASMNEQLAKQREEIQ 511 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554
No 160
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=55.60 E-value=3.6e+02 Score=30.69 Aligned_cols=130 Identities=24% Similarity=0.282 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL---ETQLAFANKSKQAVEVEMKA 463 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~EL---Q~QL~~aN~sk~~~e~~ve~ 463 (594)
++.|.+.++.++..|+-.++.+.++..+++..+. .+.+..+..++.+...+..+ ..++...+....-+. +.
T Consensus 279 l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~---~~~~~~~~~~~~~~~~~~~~~~~e~e~~l~~~el~~~~---ee 352 (511)
T PF09787_consen 279 LKQERDHLQEEIQLLERQIEQLRAELQDLEAQLE---GEQESFREQPQELSQQLEPELTTEAELRLYYQELYHYR---EE 352 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH---HH
Q ss_pred HHHhhhhhhhhhhhHHHHHHHH-------------------HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664 464 AIAARGVAESKLSVVEAEMKTQ-------------------LALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEME 522 (594)
Q Consensus 464 ~~~~~~~lEskl~~~eaEik~~-------------------L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~ 522 (594)
+..-...+..|+.+-+.||.+. |..=.++--...+.|+.+.+++..+..||+.++....
T Consensus 353 ~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~l~ 430 (511)
T PF09787_consen 353 LSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQLK 430 (511)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHHHH
No 161
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=54.61 E-value=1.2e+02 Score=26.22 Aligned_cols=54 Identities=20% Similarity=0.203 Sum_probs=44.6
Q ss_pred HHHHHHHHh-hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 483 KTQLALANK-SKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 483 k~~L~la~e-S~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
..+|-+|-+ ..+.|..++++-...|..+...+..+..+...|+..|..|-..|.
T Consensus 5 E~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 5 EKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334555643 356788899999999999999999999999999999999988865
No 162
>PLN02939 transferase, transferring glycosyl groups
Probab=54.42 E-value=5.3e+02 Score=32.29 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhhHHHHH-----HHHhhcHHHH-HHhHHHHHHHhhhhHHHHHH
Q 007664 518 EAEMETLRSKVISLEDEVE-----KERALSEENI-ANFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 518 EaEa~~L~~KV~sLE~EIe-----kERalS~E~~-aKC~~LEeeLsr~k~e~e~~ 566 (594)
-..-..|+.||+.||+-++ |-|.--.++. .|..-+|+.+++--+|+..+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (977)
T PLN02939 323 LDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSY 377 (977)
T ss_pred hccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3445678888888876554 3333333433 66667777777765555443
No 163
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=54.02 E-value=2.7e+02 Score=35.15 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=14.9
Q ss_pred hhHHHHHHHHhhcHHHHHHhHHHH
Q 007664 530 SLEDEVEKERALSEENIANFQKSK 553 (594)
Q Consensus 530 sLE~EIekERalS~E~~aKC~~LE 553 (594)
.+..+++.=|.+|.++...-+.+.
T Consensus 259 ~i~~~~~~N~~Ls~~L~~~t~~~n 282 (1109)
T PRK10929 259 SIVAQFKINRELSQALNQQAQRMD 282 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666777776666555543
No 164
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=52.84 E-value=6.2e+02 Score=32.64 Aligned_cols=89 Identities=16% Similarity=0.256 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
.|..+-+.+..+-..++.+.+.+..-..+-+.|.-+++.-++..-..++-+++.|..+|.. -.++|..+-.|-
T Consensus 1546 ~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~-------t~~aE~~~~~a~ 1618 (1758)
T KOG0994|consen 1546 NLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEE-------TAAAEKLATSAT 1618 (1758)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 3455555666666666666666655555555555555555555555555555555555554 445555555555
Q ss_pred HhhhhhhhhhhhHHHH
Q 007664 466 AARGVAESKLSVVEAE 481 (594)
Q Consensus 466 ~~~~~lEskl~~~eaE 481 (594)
...++|+.+++-+..+
T Consensus 1619 q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1619 QQLGELETRMEELKHK 1634 (1758)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666544443
No 165
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=52.76 E-value=4.5e+02 Score=30.97 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 007664 397 RTAELEEELEN 407 (594)
Q Consensus 397 qvaeLEeKlek 407 (594)
|+..+..+++.
T Consensus 202 ql~~l~~~l~~ 212 (754)
T TIGR01005 202 EIADLSKQSRD 212 (754)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 166
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.99 E-value=1.5e+02 Score=25.28 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=42.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 486 LALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 486 L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
|+.+..-.+.+...++.+..++..+..+|-.+-.+...|...+..|..+++
T Consensus 14 Ld~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 14 LDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555556677888889999999999999999999999999999998865
No 167
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=51.64 E-value=1.6e+02 Score=26.98 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664 509 AAESRLRAVEAEMETLRSKVISLEDE 534 (594)
Q Consensus 509 elEsqLe~~EaEa~~L~~KV~sLE~E 534 (594)
.+...|+.++.++..|+.||--|+-+
T Consensus 66 ~l~~eLk~a~~qi~~Ls~kv~eLq~E 91 (96)
T PF11365_consen 66 ELQEELKLAREQINELSGKVMELQYE 91 (96)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhc
Confidence 46777888999999999999888754
No 168
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=50.79 E-value=2.5e+02 Score=32.21 Aligned_cols=37 Identities=30% Similarity=0.338 Sum_probs=28.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLED 533 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~ 533 (594)
+-++.-.+.++...+-||..+...+++|..|-.+|=.
T Consensus 346 E~E~q~~~kkrqnaekql~~Ake~~eklkKKrssv~g 382 (575)
T KOG4403|consen 346 EVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKRSSVFG 382 (575)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence 3344445778888999999999999999988777643
No 169
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=50.35 E-value=61 Score=34.75 Aligned_cols=72 Identities=32% Similarity=0.340 Sum_probs=55.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~ 457 (594)
|.+..++.+...+...+..+.....+..+++..|..++.+++........++......+..|+.++.=..++
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L 289 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGL 289 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhh
Confidence 788888888888888888888888888888888888888887777777777777777677666666544444
No 170
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=49.15 E-value=3.9e+02 Score=29.19 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=8.2
Q ss_pred HHHHhhhhHHHHHHHHH
Q 007664 446 QLAFANKSKQAVEVEMK 462 (594)
Q Consensus 446 QL~~aN~sk~~~e~~ve 462 (594)
.|+.++..|..+-..++
T Consensus 85 kl~~l~keKe~L~~~~e 101 (310)
T PF09755_consen 85 KLQQLKKEKETLALKYE 101 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544444
No 171
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.59 E-value=4e+02 Score=29.15 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=75.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQ-NQLKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~-~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~ 464 (594)
.+..||+.++.+...+..+++.|......+.....+...+...-- ..+.- ...-..|..-|..+.+.+..+..+++..
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~-~~~~~~La~lL~~sre~Nk~L~~Ev~~L 91 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPP-EKENKNLAQLLSESREQNKKLKEEVEEL 91 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888777555444444332221000000 00000 0001122222333444455666666655
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHH------H--hhHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHH
Q 007664 465 IAARGVAESKLSVVEAEMKTQLALA------N--KSKQAAEEEVKSAKSKKEAAESRLRA-------VEAEMETLRSKVI 529 (594)
Q Consensus 465 ~~~~~~lEskl~~~eaEik~~L~la------~--eS~s~~~eeL~a~~a~kkelEsqLe~-------~EaEa~~L~~KV~ 529 (594)
..+.+++.+-+.++.--+.+.-... . .-.+.++.+|+.++.+...++.-+.. +.+|--..+.|+.
T Consensus 92 rqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444333321111 1 33467788888877777777765554 4444445566666
Q ss_pred hhHHHH
Q 007664 530 SLEDEV 535 (594)
Q Consensus 530 sLE~EI 535 (594)
.|-.|+
T Consensus 172 RLN~EL 177 (319)
T PF09789_consen 172 RLNHEL 177 (319)
T ss_pred HHHHHH
Confidence 666555
No 172
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=48.30 E-value=1.8e+02 Score=25.96 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhh
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKE 218 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kE 218 (594)
..|..+|+.++++|..|.-+|..+.+|
T Consensus 83 ~~L~~~l~~l~~eN~~L~~~i~~~r~e 109 (109)
T PF03980_consen 83 EQLNARLQELEEENEALAEEIQEQRKE 109 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 368899999999999999998876654
No 173
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=47.67 E-value=3.8e+02 Score=28.68 Aligned_cols=41 Identities=32% Similarity=0.432 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 496 ~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
.+.++.-......++..||-.++.+-..|...|.++.-.|+
T Consensus 219 ~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~ 259 (269)
T PF05278_consen 219 KEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVE 259 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555666666666666666655555554
No 174
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=46.72 E-value=7.2e+02 Score=31.59 Aligned_cols=13 Identities=23% Similarity=0.258 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 007664 437 ELKLEELETQLAF 449 (594)
Q Consensus 437 e~kL~ELQ~QL~~ 449 (594)
++++...+.+|..
T Consensus 108 eq~l~~~~~~L~~ 120 (1109)
T PRK10929 108 EQEILQVSSQLLE 120 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 175
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=46.56 E-value=6.2e+02 Score=30.83 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=17.4
Q ss_pred HHHHhhHHHHHH---HHhhcHHHHHHhHHHHHHHhh
Q 007664 526 SKVISLEDEVEK---ERALSEENIANFQKSKDELSK 558 (594)
Q Consensus 526 ~KV~sLE~EIek---ERalS~E~~aKC~~LEeeLsr 558 (594)
.||..|+.+|.+ +-.-|+++..|+.+|+.+|.-
T Consensus 695 ~kieal~~qik~~~~~a~~~~~lkek~e~l~~e~~~ 730 (762)
T PLN03229 695 EKIEALEQQIKQKIAEALNSSELKEKFEELEAELAA 730 (762)
T ss_pred HHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHH
Confidence 555555555543 333455555555555555543
No 176
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=45.76 E-value=2.8e+02 Score=28.69 Aligned_cols=45 Identities=13% Similarity=0.262 Sum_probs=29.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (594)
Q Consensus 405 leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~ 449 (594)
+++|+....++|..|..++..+...+.....+-++....|.+++.
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~ 78 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNE 78 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666666554
No 177
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=45.56 E-value=2.8e+02 Score=29.00 Aligned_cols=33 Identities=36% Similarity=0.441 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 007664 392 EVLIHRTAELEEELENMRAEKSELEMDLKESQR 424 (594)
Q Consensus 392 E~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~ 424 (594)
+.++.++..++.++++.+.=...||.+|...+.
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456667777777777776666677777766653
No 178
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=44.94 E-value=2.4e+02 Score=25.51 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHH
Q 007664 510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN 545 (594)
Q Consensus 510 lEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~ 545 (594)
.+.++..++.+...|...|..|..+++.||.-..++
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~L 82 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQEL 82 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888755544
No 179
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.86 E-value=6.2e+02 Score=30.29 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQ--LKEAELKLEELETQLAFANKSKQAVEVEMKAA 464 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~--L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~ 464 (594)
...-++.+..++.-+.-++++++.+++-|-..|. .+++-|.+ .-+|-+|+.|++-|++.+.+-+..++..++..
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~----~~~~~~~R~~~s~A~~K~~E~K~~~~~~~~~~r~i~~~~~~~ 405 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIV----ELEADCKRGGVTSAHSKAGEFKLTPEMEKDMSKMIVTISELE 405 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHhhhhcccchHHHHHHhhhhhcChHhHhHHHHHHHHHHHHH
Confidence 6677888888899999999999999987777775 45555543 45666899999999999999999888888764
Q ss_pred HHhh
Q 007664 465 IAAR 468 (594)
Q Consensus 465 ~~~~ 468 (594)
+.+.
T Consensus 406 ~~~~ 409 (852)
T KOG4787|consen 406 RKNL 409 (852)
T ss_pred Hhcc
Confidence 4433
No 180
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=44.25 E-value=7.6e+02 Score=31.16 Aligned_cols=58 Identities=22% Similarity=0.388 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 496 ~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
+..++..+......++.+.+.++.+..+++.++..+-.++. ++.+||+.+-+.+-.+.
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~-------e~~~k~~~~~ek~~~~~ 317 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELN-------EALAKVQEKFEKLKEIE 317 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 34555666777777788888888888888888888888877 66667766666555544
No 181
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=44.08 E-value=4.5e+02 Score=31.32 Aligned_cols=21 Identities=29% Similarity=0.238 Sum_probs=16.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHhhhH
Q 007664 136 VRQLRQAREEQEQRIQETVSKQNLEW 161 (594)
Q Consensus 136 mrQLr~~rEEqEqki~eav~kks~e~ 161 (594)
|.|=|..| +||.+|...++++
T Consensus 153 wSq~RY~R-----~vh~av~~~~reI 173 (652)
T COG2433 153 WSQNRYRR-----RVHGAVKRVVREI 173 (652)
T ss_pred ccHHHHHH-----HHHHHHHHHHHHH
Confidence 67777765 7899998888775
No 182
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.51 E-value=5.4e+02 Score=30.95 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664 399 AELEEELENMRAEKSELEMDLKESQRRLE 427 (594)
Q Consensus 399 aeLEeKleklEaEK~eLE~aL~~~~~qle 427 (594)
.+++.++.-+..++...-..|..|++...
T Consensus 561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~ 589 (717)
T PF10168_consen 561 EEIQRRVKLLKQQKEQQLKELQELQEERK 589 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666555555555544433
No 183
>PRK02119 hypothetical protein; Provisional
Probab=43.15 E-value=1.6e+02 Score=25.21 Aligned_cols=55 Identities=29% Similarity=0.259 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ 444 (594)
+...+..++..||.++-=.+--..+|-.++..-+.++...+.+|+.+-.++.+++
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667888888887777777777777777777777766666666655555543
No 184
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.53 E-value=3.9e+02 Score=27.29 Aligned_cols=73 Identities=22% Similarity=0.280 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~ 469 (594)
++..+...-..+..+...+...+.-.+..++.....+...+.++++|+.|++.+......+.--|..|.....
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~ 115 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE 115 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555555566666667777777888888877777777777666666666554
No 185
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=42.18 E-value=3.3e+02 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 506 KKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (594)
Q Consensus 506 ~kkelEsqLe~~EaEa~~L~~KV~sLE~EI 535 (594)
+|......+..++..+..+..++..|+..|
T Consensus 146 Dy~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555566666777777777777777665
No 186
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=42.00 E-value=5.7e+02 Score=29.10 Aligned_cols=108 Identities=20% Similarity=0.301 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhh
Q 007664 413 SELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKS 492 (594)
Q Consensus 413 ~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS 492 (594)
+++...|...+.++.+..-.+.+++...+...++|+-+...++.+..++.++..... .+.-++.+ -.+-
T Consensus 77 ddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~-------kAqQ~lar----~t~Q 145 (499)
T COG4372 77 DDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLA-------KAQQELAR----LTKQ 145 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH----HHHH
Confidence 344455555556666666666666666666666666666666666555443222111 11111111 1111
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISL 531 (594)
Q Consensus 493 ~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sL 531 (594)
.....+.|+-+.++|..++.++..+.++-+.|..-+.-|
T Consensus 146 ~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql 184 (499)
T COG4372 146 AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223445566666666666666666666655555433333
No 187
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=40.66 E-value=4e+02 Score=26.84 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 007664 427 ETSQNQLKEAELKLEELETQLAFANKSKQAVE 458 (594)
Q Consensus 427 e~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e 458 (594)
......+.+++.++-+||.+.......+.+..
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~ 158 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKD 158 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666677776655555555543
No 188
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=39.78 E-value=1.8e+02 Score=32.84 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 007664 515 RAVEAEMETLRSKVISL 531 (594)
Q Consensus 515 e~~EaEa~~L~~KV~sL 531 (594)
..++.+.+.+..++.-|
T Consensus 148 ~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 148 REAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 189
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=39.69 E-value=7.8e+02 Score=29.96 Aligned_cols=178 Identities=27% Similarity=0.313 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRA---------------------EKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEa---------------------EK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ 444 (594)
++..+++.+..+..+|+.-.+.++. ..+++...+..++..+......-.+.......++
T Consensus 229 ~l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~ 308 (908)
T COG0419 229 ELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007664 445 TQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETL 524 (594)
Q Consensus 445 ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L 524 (594)
. .....+....+...+.........++.+++-+..++.......+.-.+...+-+......+..++.++...-.-...+
T Consensus 309 ~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~ 387 (908)
T COG0419 309 G-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQL 387 (908)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHH
Q 007664 525 RSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564 (594)
Q Consensus 525 ~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e 564 (594)
...+.-+-.+...-.+...++...+.+++..+......++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 427 (908)
T COG0419 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELE 427 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 190
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=39.31 E-value=4.2e+02 Score=26.70 Aligned_cols=68 Identities=15% Similarity=0.290 Sum_probs=32.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-------h----cHHHHHHhHHHHHHHhhhhHHHHH
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERA-------L----SEENIANFQKSKDELSKVKQEIEL 565 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERa-------l----S~E~~aKC~~LEeeLsr~k~e~e~ 565 (594)
.++.........+..++..++..+..++.+-..|=.....=++ + +.........+|+.+.+++.+.+.
T Consensus 106 ~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea 184 (219)
T TIGR02977 106 RELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAES 184 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555555555554444333322222 1 234445556667766666654443
No 191
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=38.91 E-value=3.7e+02 Score=32.88 Aligned_cols=100 Identities=30% Similarity=0.374 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhchhhH---HHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHH
Q 007664 105 STLKQQLKAASQKNSALENRVSHLDGA---LKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQT 181 (594)
Q Consensus 105 ~~lK~~Le~~~~~~~~~e~rv~hLD~A---LKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~ 181 (594)
.+|..||.+.+...-.+.-+...|-.. +|+=-+.|+..=.|.++.+-+-=-.-.-|..+++.+++.-|.++
T Consensus 437 ~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~------ 510 (861)
T PF15254_consen 437 MSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNV------ 510 (861)
T ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhh
Q 007664 182 AKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELE 220 (594)
Q Consensus 182 ~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELe 220 (594)
..++-+|+..||||.-|...|+-.-.|+.
T Consensus 511 ----------k~~q~kLe~sekEN~iL~itlrQrDaEi~ 539 (861)
T PF15254_consen 511 ----------KSLQFKLEASEKENQILGITLRQRDAEIE 539 (861)
T ss_pred ----------HHHhhhHHHHHhhhhHhhhHHHHHHHHHH
No 192
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=38.88 E-value=4.3e+02 Score=26.77 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=26.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhh
Q 007664 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559 (594)
Q Consensus 503 ~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~ 559 (594)
..+++-.+..++..++.|......-..++..+++--..--..+......|++.|.+.
T Consensus 155 l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 155 LQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555444444444444444433333334444455555555544
No 193
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=38.82 E-value=41 Score=33.28 Aligned_cols=49 Identities=33% Similarity=0.432 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHH
Q 007664 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 514 Le~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~ 566 (594)
|+++|.-...-..+-.+||.|| .|| +.+.+.|+-|.||+.-.++|+.++
T Consensus 2 LeD~EsklN~AIERnalLE~EL-dEK---E~L~~~~QRLkDE~RDLKqEl~V~ 50 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL-DEK---ENLREEVQRLKDELRDLKQELIVQ 50 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHCH-----------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666667777888888 444 468889999999999999888554
No 194
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=38.68 E-value=2.7e+02 Score=30.87 Aligned_cols=96 Identities=23% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh----h
Q 007664 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR----G 469 (594)
Q Consensus 394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~----~ 469 (594)
+.+++.-||.=+.+++.|..-+++.|.....+...-...-..+...|.|.-.=-+..|+.-++--.+-..|..++ +
T Consensus 125 ~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~ 204 (401)
T PF06785_consen 125 TKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIG 204 (401)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHHH
Q 007664 470 VAESKLSVVEAEMKTQLALA 489 (594)
Q Consensus 470 ~lEskl~~~eaEik~~L~la 489 (594)
.||+||.-+--||..+|-+.
T Consensus 205 ~LEsKVqDLm~EirnLLQle 224 (401)
T PF06785_consen 205 KLESKVQDLMYEIRNLLQLE 224 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhh
No 195
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=38.32 E-value=5.9e+02 Score=28.21 Aligned_cols=31 Identities=10% Similarity=0.241 Sum_probs=26.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 385 SSIKAELEVLIHRTAELEEELENMRAEKSEL 415 (594)
Q Consensus 385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eL 415 (594)
..+..++..+..++..++..+..+.+++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 93 GNEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999888654
No 196
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=38.21 E-value=3.3e+02 Score=25.26 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 007664 422 SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK 483 (594)
Q Consensus 422 ~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik 483 (594)
.+.+..+.+-.+-+-+.+-.+|+.+|-.-......++.++.+.-=....|..+|..++.|+.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444555555444444555555555555555677888888888876
No 197
>PF10304 DUF2411: Domain of unknown function (DUF2411); InterPro: IPR019414 This entry represents a 38 residue domain of unknown function that is found at the extreme C-terminal end of some HEAT repeats.
Probab=38.13 E-value=26 Score=26.31 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=19.5
Q ss_pred hcccchHHHHHHHHHHHHHhhhH
Q 007664 75 NVSAKEDLVKQHAKVAEEAVSGW 97 (594)
Q Consensus 75 ~~~~Kd~lvkqh~KvaeEAv~Gw 97 (594)
..+..|.+|++||.+|=|.+.+|
T Consensus 14 ~~~D~D~lvr~hA~~~Le~Le~~ 36 (36)
T PF10304_consen 14 ESTDNDDLVREHAQDALEELEAW 36 (36)
T ss_pred HHhCCcHHHHHHHHHHHHHHhcC
Confidence 34566899999999999988887
No 198
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.90 E-value=1.5e+02 Score=28.38 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=16.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDL 419 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL 419 (594)
.+..++..++.++..|...+..++++...|...+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444444444555544555544444444443
No 199
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.68 E-value=5.4e+02 Score=27.53 Aligned_cols=16 Identities=19% Similarity=0.437 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 007664 393 VLIHRTAELEEELENM 408 (594)
Q Consensus 393 ~~~~qvaeLEeKlekl 408 (594)
.+......++++++.|
T Consensus 42 ~~~~~~~~~q~ei~~L 57 (265)
T COG3883 42 ELQKEKKNIQNEIESL 57 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 200
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=37.45 E-value=4.8e+02 Score=26.87 Aligned_cols=159 Identities=20% Similarity=0.285 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~ 469 (594)
|+..+.+++-+.+..+-.-..|..-|-..|. .++..+...+..+.+|+..+..-+-+....++++-.......
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~-------e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~ 83 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLR-------ELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAE 83 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHH
Confidence 3444445555555554444444444433333 333333333344444444433333333333444433333334
Q ss_pred hhhhhhhhHHHHHHHH---HHHHH----------hhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 470 VAESKLSVVEAEMKTQ---LALAN----------KSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 470 ~lEskl~~~eaEik~~---L~la~----------eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
.|-.+|-.+++|+..+ ++... .+..+ ...-.+-......+..+++.+.+|+...+.+..-.-.-++
T Consensus 84 lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~dea-k~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe 162 (202)
T PF06818_consen 84 LLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEA-KAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFE 162 (202)
T ss_pred HhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchh-HHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4555555566555544 22220 00000 0000001223445666777777777777777776666777
Q ss_pred HHHhhcHHHHHHhHHHHHHH
Q 007664 537 KERALSEENIANFQKSKDEL 556 (594)
Q Consensus 537 kERalS~E~~aKC~~LEeeL 556 (594)
.||..=.+=..|--.-..+|
T Consensus 163 ~ER~~W~eEKekVi~YQkQL 182 (202)
T PF06818_consen 163 QERRTWQEEKEKVIRYQKQL 182 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77765444333333333333
No 201
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=37.30 E-value=4.7e+02 Score=26.79 Aligned_cols=56 Identities=27% Similarity=0.300 Sum_probs=31.1
Q ss_pred HHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHH
Q 007664 497 EEEVKSAKSKKEAAES----RLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS 552 (594)
Q Consensus 497 ~eeL~a~~a~kkelEs----qLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~L 552 (594)
.++|.-++.+...+.+ .+..+.+.++....+|.||+..|+.-.---.++..=|-+|
T Consensus 142 eekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 142 EEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443333 4455677777777777777777665554445555555444
No 202
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=36.68 E-value=8.4e+02 Score=29.51 Aligned_cols=54 Identities=22% Similarity=0.294 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhh
Q 007664 506 KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559 (594)
Q Consensus 506 ~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~ 559 (594)
....|..++...++.++.+...+.-++.+|++++---..+...|..|-..++|.
T Consensus 567 ~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~ 620 (698)
T KOG0978|consen 567 SLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERL 620 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666666666666666667777766554444444444444444444
No 203
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.10 E-value=5.7e+02 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELK 439 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~k 439 (594)
+..+++.+..++.++..|+..+..+.++++..+...+.++..+..++.+-+..
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555556666666665555555555555555555555555555444433
No 204
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.52 E-value=5.5e+02 Score=26.68 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 007664 438 LKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT 484 (594)
Q Consensus 438 ~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~ 484 (594)
.-|.|+..+.+..+.++.+...+|..+.++...||.-+..+..|..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666678888888888888888877766666655443
No 205
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.64 E-value=1.2e+03 Score=30.21 Aligned_cols=32 Identities=25% Similarity=0.183 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHH
Q 007664 193 DLCSKLEAAEKQNSALKLELLSLVKELELRIV 224 (594)
Q Consensus 193 ~L~~rLes~EKen~sLkyE~~~l~kELeiR~~ 224 (594)
.+...|.-..++..-.+-|+++.+-||+|-..
T Consensus 483 ~~ekel~~~~~~~n~~~~e~~vaesel~~L~~ 514 (1293)
T KOG0996|consen 483 KLEKELMPLLKQVNEARSELDVAESELDILLS 514 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666667777777777766544
No 206
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.45 E-value=4.9e+02 Score=25.79 Aligned_cols=125 Identities=21% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH-hhHHHHHHHHHHHHhhHHHHHHHH
Q 007664 436 AELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALAN-KSKQAAEEEVKSAKSKKEAAESRL 514 (594)
Q Consensus 436 ae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~-eS~s~~~eeL~a~~a~kkelEsqL 514 (594)
+++.+.+++.+|..++.....+-..-..+..+...++..+...+.-..-.|..++ ++-..+.............++.++
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~ 107 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQL 107 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHHH
Q 007664 515 RAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQH 567 (594)
Q Consensus 515 e~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~~ 567 (594)
......+..|...+..|+.+|. ++..|...|-.....-+.-..+..
T Consensus 108 ~~~~~~~~~l~~~l~~l~~kl~-------e~k~k~~~l~ar~~~a~a~~~~~~ 153 (221)
T PF04012_consen 108 DQAEAQVEKLKEQLEELEAKLE-------ELKSKREELKARENAAKAQKKVNE 153 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
No 207
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=33.26 E-value=81 Score=27.99 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEM 417 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~ 417 (594)
.+..|++-...++++++++++.|+..|.++|-
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888876664
No 208
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.16 E-value=6.3e+02 Score=26.96 Aligned_cols=32 Identities=6% Similarity=0.184 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 415 LEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 415 LE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
...++.-.+.++...+.+|.+++.++.+.|.+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 199 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIK 199 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666777788888888888888887776
No 209
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=32.89 E-value=5.1e+02 Score=25.88 Aligned_cols=84 Identities=27% Similarity=0.326 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhH
Q 007664 398 TAELEEELENMRAEKSELEMDLKES----------------QRRLETSQNQLKEAELKLEE-------LETQLAFANKSK 454 (594)
Q Consensus 398 vaeLEeKleklEaEK~eLE~aL~~~----------------~~qle~S~~~L~Eae~kL~E-------LQ~QL~~aN~sk 454 (594)
|..|+.|+.....--.+++.-+... -..|+....+|.+-..+..+ |..||+-++..+
T Consensus 18 v~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N 97 (182)
T PF15035_consen 18 VQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKAN 97 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544211 13455566667777777777 999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 007664 455 QAVEVEMKAAIAARGVAESKLSVVEAE 481 (594)
Q Consensus 455 ~~~e~~ve~~~~~~~~lEskl~~~eaE 481 (594)
.++..++..+-.+...+-..|..-+.+
T Consensus 98 ~~L~~dl~klt~~~~~l~~eL~~ke~~ 124 (182)
T PF15035_consen 98 EALQEDLQKLTQDWERLRDELEQKEAE 124 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887666665544444433433
No 210
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=32.46 E-value=2e+02 Score=28.63 Aligned_cols=61 Identities=28% Similarity=0.519 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHH------HHHhHHHHHHHhhhhHHHH
Q 007664 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN------IANFQKSKDELSKVKQEIE 564 (594)
Q Consensus 504 ~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~------~aKC~~LEeeLsr~k~e~e 564 (594)
......+..++..+..++..+..++..|+.+|+..+.--.+. ..++..|+.++.....+++
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
No 211
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.26 E-value=2.3e+02 Score=23.85 Aligned_cols=50 Identities=34% Similarity=0.363 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 395 IHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444 (594)
Q Consensus 395 ~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ 444 (594)
..++.+||.++-=.+--..+|-..+..-+.+++..+.+++.+..++.++.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44666666666666666666666666666666666666655555555544
No 212
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=31.89 E-value=1.4e+02 Score=24.52 Aligned_cols=46 Identities=28% Similarity=0.362 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007664 170 SKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLV 216 (594)
Q Consensus 170 ~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~ 216 (594)
.+|.|+..+|-... +.-....+....+|..++.||..|+-+|..++
T Consensus 4 ~Rl~ELe~klkaer-E~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 4 LRLEELERKLKAER-EARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHHhH-HhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666655332 44445567889999999999999999987654
No 213
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=31.80 E-value=5.9e+02 Score=26.22 Aligned_cols=128 Identities=19% Similarity=0.202 Sum_probs=81.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhh----hhhhhhHHHHHHHHHHHHhhhhhh
Q 007664 134 ECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSE----AAASADRDLCSKLEAAEKQNSALK 209 (594)
Q Consensus 134 eCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~~~~e----~~a~~~~~L~~rLes~EKen~sLk 209 (594)
+--+..|...++.-.-..|.|.+.--.+-.....|+.++.+|.++|.....- ...........-..+..++|..+-
T Consensus 15 ~F~~~~rGy~~eEVdeFLD~V~~dye~~l~e~~~l~~~i~~L~~~l~~~~~~~~s~~i~~a~~~a~~~~~~a~~ea~~il 94 (212)
T COG3599 15 EFGTGFRGYDEEEVDEFLDDVIDDYEQLLDENEDLEDEIDELKEELKEAADAEDSQAIQQAETEAEELKQAAEAEADDIL 94 (212)
T ss_pred HhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334677788888888888887777777777788888888888888765432 111111222345667777777776
Q ss_pred HHHHHHHhhhhHhHHhhhhhhhHH-HHHhHHhHHhHHHHHHHHHHHHHHHHHHhhcC
Q 007664 210 LELLSLVKELELRIVERDLSTKAA-ETASKQHLESIKKLAKVEAECLRLKAVVRKAS 265 (594)
Q Consensus 210 yE~~~l~kELeiR~~Ere~s~~aa-e~a~KQhlEsvKKiakLEaECqRLr~l~rK~l 265 (594)
-++..+.+.+- +.=..++.+.. ++.-.+-++.+|.-+++ +|+|||..+.-.+
T Consensus 95 ~~a~~~a~~v~--~~a~~~a~~~~~~a~~~~e~e~~~~q~~~--~~~rl~~~~~~ql 147 (212)
T COG3599 95 KRASAQAQRVF--GKAQYKADRYLEDAKIAQELEDLKRQAQV--ERQRLRSDIEAQL 147 (212)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 66666544332 22222332222 23566778888877765 7999998877554
No 214
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=30.98 E-value=3.9e+02 Score=24.22 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSEL 415 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eL 415 (594)
.+++.+..++......+..+|.+...|
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444444444444444333
No 215
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.80 E-value=6.2e+02 Score=26.17 Aligned_cols=164 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA-------------------ELKLEELETQL 447 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Ea-------------------e~kL~ELQ~QL 447 (594)
|..-+..|...+..+..-+-++-+.+..+++.+..++...+....+-+.| +....-++.++
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~ 108 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAEL 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHH---------HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007664 448 AFANKSKQAVEVEMKAAIAARGVAESKLSVVEA---------EMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518 (594)
Q Consensus 448 ~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~ea---------Eik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~E 518 (594)
..+......+...+..++.+..++..+...+.+ -+.+.++...- +..+..|+.++.+...++-+.....
T Consensus 109 ~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~--~sa~~~fer~e~kiee~ea~a~~~~ 186 (225)
T COG1842 109 QQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS--SSAMAAFERMEEKIEEREARAEAAA 186 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHH
Q 007664 519 AEMETLRSKVISLEDEVEKERALSEENIANFQKSKDEL 556 (594)
Q Consensus 519 aEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeL 556 (594)
.=. ......|+.++.+-.+ ..........|.+.+
T Consensus 187 el~---~~~~~dl~~e~a~~~~-~~~v~~~La~lka~~ 220 (225)
T COG1842 187 ELA---EGSGDDLDKEFAQAGA-QSAVDSRLAALKARM 220 (225)
T ss_pred Hhh---ccCcccHHHHHHHhcc-cccHHHHHHHHHHhh
No 216
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=30.60 E-value=1.1e+03 Score=28.84 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=45.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
..++++...+...+..+.+....=++.|...-..|-.++-+|=..+.-+..|...|+.++...+
T Consensus 586 ~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~k 649 (786)
T PF05483_consen 586 EKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLK 649 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666555556666666677777888888888888888888888888774
No 217
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=30.50 E-value=9.6e+02 Score=28.30 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007664 394 LIHRTAELEEELENMRAEKSELEMDLKES 422 (594)
Q Consensus 394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~ 422 (594)
...-..-|...+..+..+..+.|.+|..-
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555444433
No 218
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=30.24 E-value=4.9e+02 Score=24.82 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 007664 440 LEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEA 519 (594)
Q Consensus 440 L~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~Ea 519 (594)
.+-+-.||+.+.++..+. +..|.+||.-+...+.. +.+....-.+++-.+..+...+-..+.....
T Consensus 45 ~~~v~kql~~vs~~l~~t----------KkhLsqRId~vd~klDe----~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 45 VASVSKQLEQVSESLSST----------KKHLSQRIDRVDDKLDE----QKEISKQIKDEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334555655555554443 33444555555555333 3333333233343344444444444444444
Q ss_pred HHHHHHHHHHhhH
Q 007664 520 EMETLRSKVISLE 532 (594)
Q Consensus 520 Ea~~L~~KV~sLE 532 (594)
=+..|..||..||
T Consensus 111 ~V~~Le~ki~~ie 123 (126)
T PF07889_consen 111 MVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
No 219
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=30.22 E-value=1.2e+02 Score=30.14 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=33.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449 (594)
Q Consensus 408 lEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~ 449 (594)
.+.|+.+|...|.+..+.+.+.+.-|..-+....||+++|+.
T Consensus 27 sEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGi 68 (162)
T PF04201_consen 27 SEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGI 68 (162)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 356666777778888888888888888888889999999865
No 220
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=30.14 E-value=7.7e+02 Score=27.08 Aligned_cols=110 Identities=22% Similarity=0.287 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH-----HHHHHhhH-HHHHHHH
Q 007664 427 ETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQ-----LALANKSK-QAAEEEV 500 (594)
Q Consensus 427 e~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~-----L~la~eS~-s~~~eeL 500 (594)
.+...++.++..-..+|+.||..+-..+..++..+...+...+.-+.++.+++-=+..- .++.++.- -.+..+.
T Consensus 247 ~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev 326 (384)
T PF03148_consen 247 AALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEV 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHH
Confidence 33445555556667778888888888888888888777777777777777666543211 22233222 2444556
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 501 ~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
.........|..+|..+++....|......||.+|.
T Consensus 327 ~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 327 KELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777777777777777777765
No 221
>PF15294 Leu_zip: Leucine zipper
Probab=30.02 E-value=7.3e+02 Score=26.75 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=35.9
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHH
Q 007664 468 RGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIA 547 (594)
Q Consensus 468 ~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~a 547 (594)
...||.++.-+..++.+.+.--. +..+.|+.-|.....++-.....+..-+.++++ -++. .+
T Consensus 192 l~dLE~k~a~lK~e~ek~~~d~~--------------~~~k~L~e~L~~~KhelL~~QeqL~~aekeLek--Kfqq--T~ 253 (278)
T PF15294_consen 192 LSDLENKMAALKSELEKALQDKE--------------SQQKALEETLQSCKHELLRVQEQLSLAEKELEK--KFQQ--TA 253 (278)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcchhhhcchhhHHH--HhCc--cH
Confidence 35566666666655443322111 122233334444444444444444443444433 3332 55
Q ss_pred HhHHHHHHHhhhh
Q 007664 548 NFQKSKDELSKVK 560 (594)
Q Consensus 548 KC~~LEeeLsr~k 560 (594)
.|+++.+-|.+..
T Consensus 254 ay~NMk~~ltkKn 266 (278)
T PF15294_consen 254 AYRNMKEILTKKN 266 (278)
T ss_pred HHHHhHHHHHhcc
Confidence 6788887777776
No 222
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=29.93 E-value=7e+02 Score=26.55 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHHHHH--HHHHhhhh
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE----LKLEELETQLAFANKSKQAVEVEMK--AAIAARGV 470 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae----~kL~ELQ~QL~~aN~sk~~~e~~ve--~~~~~~~~ 470 (594)
+|-.|-.+.+....=.+-++-..+ .+++..+..|.+.+ .++..||.|++.+|..+.....+|. .++-+++|
T Consensus 39 ~Vr~lLqqy~~~~~~i~~le~~~~---~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EY 115 (258)
T PF15397_consen 39 KVRKLLQQYDIYRTAIDILEYSNH---KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEY 115 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCh---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 444555555555554444554444 45555666665544 4567788888888888887777776 56666665
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHH-HhhHHHHHHHHHHHHHHH
Q 007664 471 AESKLSVVEAEMKTQLALANKSKQAAEEEVKSA-KSKKEAAESRLRAVEAEM 521 (594)
Q Consensus 471 lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~-~a~kkelEsqLe~~EaEa 521 (594)
-..-|+ =+++.++|.-..++......+|.-+ ...+..|+.+.....-++
T Consensus 116 PvK~vq--Ia~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~i 165 (258)
T PF15397_consen 116 PVKAVQ--IANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEI 165 (258)
T ss_pred hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333222 2345555555555555544444443 334444444444444333
No 223
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=29.68 E-value=2.6e+02 Score=32.56 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLET-SQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~-S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
+.....++..++.++++++.++.+++..|.... -+.. -...+.++-..+.+++.+|+..+..=..+..+++
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~ 629 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSE-LYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLE 629 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666777777777666666664210 0000 0113555555555555555555554444444443
No 224
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=29.60 E-value=1.4e+03 Score=29.80 Aligned_cols=131 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 007664 405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF---ANKSKQAVEVEMKAAIAARGVAESKLSVVEAE 481 (594)
Q Consensus 405 leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~---aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaE 481 (594)
+..+.-.+..+....+.++..++.++.+..+.++.+.+.+.-+.. ..........++..+...+-.+..++.-+...
T Consensus 211 lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~ 290 (1294)
T KOG0962|consen 211 LKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREK 290 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHH----HHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 482 MKTQ----LALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (594)
Q Consensus 482 ik~~----L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EI 535 (594)
|... +.--.+..+...+.+.-++.++..++-++..++.+-..|+..-..|..++
T Consensus 291 i~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~ 348 (1294)
T KOG0962|consen 291 ILKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQ 348 (1294)
T ss_pred cccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 225
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.48 E-value=2.4e+02 Score=28.76 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 395 IHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 395 ~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
..+..+++..++.++.+...|..-|.++. +-..+.+++.+|.++|.+++..+.....+...+.
T Consensus 131 T~~y~D~~arl~~l~~~~~rl~~ll~ka~-----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 131 TEQYVDLEARLKNLEAEEERLLELLEKAK-----TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35777888888887777666555554222 4456777788888888887777776666655443
No 226
>PRK04325 hypothetical protein; Provisional
Probab=29.26 E-value=3.5e+02 Score=23.23 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444 (594)
Q Consensus 394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ 444 (594)
+..++.+||.|+-=.+-=..+|-.++..-+.++.....+|+.+-.++.++.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777777777766666677777777777777666666666555555543
No 227
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.04 E-value=6.1e+02 Score=25.56 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHH
Q 007664 132 LKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLE 211 (594)
Q Consensus 132 LKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE 211 (594)
++.+..+++..++.-.++|.+++......--.....+..++...+.++. .|..+++...+++..++-.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~------------~l~~~i~~~~~~i~~~r~~ 92 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLE------------RLRERIERLRKRIEQKRER 92 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhHhHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHHhhc
Q 007664 212 LLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKA 264 (594)
Q Consensus 212 ~~~l~kELeiR~~Ere~s~~aae~a~KQhlEsvKKiakLEaECqRLr~l~rK~ 264 (594)
+..+...|.-|..-..-.....+.-.++..+....+...+..-..+...+..+
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 145 (302)
T PF10186_consen 93 LEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARR 145 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 228
>PRK04406 hypothetical protein; Provisional
Probab=28.94 E-value=3.8e+02 Score=23.18 Aligned_cols=50 Identities=26% Similarity=0.227 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 393 VLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEE 442 (594)
Q Consensus 393 ~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~E 442 (594)
.+..++..||.++-=.+-=..+|-.++..-+.++...+.+|+.+-.++.+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567777777777666666677777776666666666666555444444
No 229
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=28.62 E-value=7.9e+02 Score=26.70 Aligned_cols=27 Identities=11% Similarity=0.304 Sum_probs=16.3
Q ss_pred HHhhHHHHHHHHhhcHHHHHHhHHHHH
Q 007664 528 VISLEDEVEKERALSEENIANFQKSKD 554 (594)
Q Consensus 528 V~sLE~EIekERalS~E~~aKC~~LEe 554 (594)
...|+++++-=|.+-..+..|..+.+-
T Consensus 344 ~~~L~r~~~~~~~~y~~ll~r~~e~~l 370 (444)
T TIGR03017 344 MSVLQRDVENAQRAYDAAMQRYTQTRI 370 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666665543
No 230
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=28.59 E-value=1.4e+03 Score=29.54 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCC
Q 007664 247 LAKVEAECLRLKAVVRKASPNTEN 270 (594)
Q Consensus 247 iakLEaECqRLr~l~rK~lp~~d~ 270 (594)
+..|.+++..|+......-|+|++
T Consensus 560 ~~~l~e~~~el~~e~~~~e~~~~~ 583 (1353)
T TIGR02680 560 EEVLEEERDALRTERERLEQGTDR 583 (1353)
T ss_pred HHHHHHHHHHHHHHHhccccCCCC
Confidence 566777788888887777777654
No 231
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.51 E-value=4.9e+02 Score=29.38 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhH
Q 007664 397 RTAELEEELENMRAEK 412 (594)
Q Consensus 397 qvaeLEeKleklEaEK 412 (594)
++..|+.++..++.+.
T Consensus 72 ~~~~l~~~l~~l~~~~ 87 (525)
T TIGR02231 72 RLAELRKQIRELEAEL 87 (525)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 232
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=28.33 E-value=3.7e+02 Score=27.94 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=29.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664 408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (594)
Q Consensus 408 lEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~ 457 (594)
++++.+.+...+...+.+++.....|.-++.+...|+.|.+..+.+-+++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 44555555555555556666666666666666666666655555544444
No 233
>PF13514 AAA_27: AAA domain
Probab=28.28 E-value=1.3e+03 Score=28.95 Aligned_cols=171 Identities=21% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLET------SQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA 463 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~------S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~ 463 (594)
++.....++..+...++.++.+....+..+...-..+.. .-..+..+...+...+.. ......+...+..
T Consensus 737 ~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l~~~~~~~~~~~~~~~L~~~l~~a~~~----~~~~~~l~~~~~~ 812 (1111)
T PF13514_consen 737 ELREALAEIRELRRRIEQMEADLAAFEEQVAALAERLGPDLPEDPAEEALEALRARLEEAREA----QEERERLQEQLEE 812 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcH
Q 007664 464 AIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE 543 (594)
Q Consensus 464 ~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~ 543 (594)
+......+...+..++.++..++..+.-..-....++......+..+..++..++..+.....-...-+-.-+.+-.--.
T Consensus 813 ~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~e~~~~d~~ 892 (1111)
T PF13514_consen 813 LEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREELEDLERQLERQADGLDLEELEEELEELDPD 892 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHhhccCHH
Q ss_pred HHHHHhHHHHHHHhhhhHHHH
Q 007664 544 ENIANFQKSKDELSKVKQEIE 564 (594)
Q Consensus 544 E~~aKC~~LEeeLsr~k~e~e 564 (594)
++......++.++.....+++
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~ 913 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELE 913 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 234
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=28.16 E-value=8.1e+02 Score=26.66 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 007664 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~ 467 (594)
.-.+.....+-.+|...+..+.+..+++-....+...+...-+.+-.++.+++.+++...+..|..-..+-..+.....+
T Consensus 19 k~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~ 98 (294)
T COG1340 19 KEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEK 98 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455666666777777777777777777777777777777777777777777666666665554444444444
Q ss_pred hh
Q 007664 468 RG 469 (594)
Q Consensus 468 ~~ 469 (594)
.+
T Consensus 99 ~~ 100 (294)
T COG1340 99 RN 100 (294)
T ss_pred hh
Confidence 43
No 235
>PRK00846 hypothetical protein; Provisional
Probab=27.96 E-value=4.1e+02 Score=23.43 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 392 EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445 (594)
Q Consensus 392 E~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~ 445 (594)
+.+..++.+||.++-=.+-=..+|-.++..-+..++..+.+++-+-.++.+++.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345567777777766666666666667776666666666666666666555553
No 236
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.78 E-value=1.4e+02 Score=27.75 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHh
Q 007664 165 KSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVK 217 (594)
Q Consensus 165 ~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~k 217 (594)
+.-|-.++.||+.-|. ||.+|.+++..||--||.|=+||-.
T Consensus 58 KaRlItQVLELQnTLd------------DLSqRVdsVKEEnLKLrSENQVLGQ 98 (120)
T KOG3650|consen 58 KARLITQVLELQNTLD------------DLSQRVDSVKEENLKLRSENQVLGQ 98 (120)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 3344556666666554 7889999999999999999988854
No 237
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=27.60 E-value=4.3e+02 Score=23.27 Aligned_cols=51 Identities=25% Similarity=0.504 Sum_probs=40.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHH
Q 007664 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564 (594)
Q Consensus 504 ~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e 564 (594)
......++.++..--.|+..++.+|.-||..-. .+..+| |++|.|.+.+++
T Consensus 24 k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~-------kmK~~Y---EeEI~rLr~eLe 74 (79)
T PF08581_consen 24 KHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR-------KMKQQY---EEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHH
Confidence 446777888888889999999999999998743 444444 899999987654
No 238
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=27.49 E-value=1.7e+02 Score=26.79 Aligned_cols=38 Identities=42% Similarity=0.510 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 509 AAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 509 elEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
+|.-||...+.|+.-||.++.-||.+ -+.|..+|.|++
T Consensus 5 eLR~qLqFvEEEa~LlRRkl~ele~e--------------N~~l~~EL~kyk 42 (96)
T PF11365_consen 5 ELRRQLQFVEEEAELLRRKLSELEDE--------------NKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 47789999999999999999988887 556777888876
No 239
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.45 E-value=3.5e+02 Score=29.19 Aligned_cols=61 Identities=25% Similarity=0.395 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL 447 (594)
|.-|-..+.-+|.-|..+++.++....++...+-+-...++-.++.+..+...+.+|+.+|
T Consensus 103 LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 103 LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778899999999998888888888887666777777777777777777777775
No 240
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.36 E-value=1.6e+02 Score=26.37 Aligned_cols=49 Identities=29% Similarity=0.369 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHH
Q 007664 101 ENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQR 149 (594)
Q Consensus 101 e~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqk 149 (594)
+.|..++-.+||..-----.+|+|..||-+-|++-+.-=|++|-+-.+-
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888887777777899999999999999887777777665443
No 241
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.33 E-value=1.9e+02 Score=33.24 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007664 430 QNQLKEAELKLEELETQ 446 (594)
Q Consensus 430 ~~~L~Eae~kL~ELQ~Q 446 (594)
...|.+.+.....|+.|
T Consensus 103 e~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 242
>PRK02793 phi X174 lysis protein; Provisional
Probab=27.19 E-value=4e+02 Score=22.80 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443 (594)
Q Consensus 394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~EL 443 (594)
+..++.+||.++-=.+-=..+|-.++..-+.++...+.+++.+-.++.++
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677788877777776677777777777777766666666555555443
No 243
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.05 E-value=7.9e+02 Score=26.19 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 439 KLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 439 kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
+.++|.+||+.+.++-+.=..++.
T Consensus 121 qIa~L~rqlq~lk~~qqdEldel~ 144 (258)
T PF15397_consen 121 QIANLVRQLQQLKDSQQDELDELN 144 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777776665554333333
No 244
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=26.60 E-value=4.5e+02 Score=23.19 Aligned_cols=29 Identities=31% Similarity=0.464 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007664 496 AEEEVKSAKSKKEAAESRLRAVEAEMETL 524 (594)
Q Consensus 496 ~~eeL~a~~a~kkelEsqLe~~EaEa~~L 524 (594)
...+......+...++.++..++.++..+
T Consensus 72 l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 72 LKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555554443
No 245
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.60 E-value=1.4e+03 Score=28.91 Aligned_cols=100 Identities=26% Similarity=0.366 Sum_probs=68.2
Q ss_pred CCCChhhhhhhHhhHhHHHHHHHhhcc---------cchHHHHHH----HHHHHHHhhhHHHh-----HHHHHHHHHHHH
Q 007664 51 APPLDEVVNDSVKTLTEKLSAALLNVS---------AKEDLVKQH----AKVAEEAVSGWEKA-----ENELSTLKQQLK 112 (594)
Q Consensus 51 ~~~~~e~~~~~~k~LnekLs~al~~~~---------~Kd~lvkqh----~KvaeEAv~GwEKa-----e~E~~~lK~~Le 112 (594)
+...+.++...++.|-.+...-|++.. -|+..++++ .||+.+|-.|.-|+ |+|--.||++|+
T Consensus 1020 ~~~~~~d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~ 1099 (1189)
T KOG1265|consen 1020 PAALNSDNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLD 1099 (1189)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777666555432 244444443 57888888888776 667778888888
Q ss_pred HHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007664 113 AASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQ 157 (594)
Q Consensus 113 ~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kk 157 (594)
.....+... |...|.=+.+-|.+||=...-|.+.|...
T Consensus 1100 kkr~e~ik~-------~~~~kdK~e~er~~rE~n~s~i~~~V~e~ 1137 (1189)
T KOG1265|consen 1100 KKRMEDIKV-------DKVIKDKAERERRKRELNSSNIKEFVEER 1137 (1189)
T ss_pred HHHHHhhhh-------ccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554442 66677777888888888888888877654
No 246
>PRK00736 hypothetical protein; Provisional
Probab=26.51 E-value=3.8e+02 Score=22.68 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443 (594)
Q Consensus 396 ~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~EL 443 (594)
.++.+||.|+-=.+-=..+|-.++..-+.++.....+|..+-.++.++
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666655555555666666666666665555555555554443
No 247
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.06 E-value=75 Score=32.62 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=26.5
Q ss_pred hHHhH-HHHHHHHHHHHHHHHHHhhcCCCCC
Q 007664 240 HLESI-KKLAKVEAECLRLKAVVRKASPNTE 269 (594)
Q Consensus 240 hlEsv-KKiakLEaECqRLr~l~rK~lp~~d 269 (594)
--+|| +||.+|++|...+|--+.|.-|||.
T Consensus 27 r~dSve~KIskLDaeL~k~~~Qi~k~R~gpa 57 (218)
T KOG1655|consen 27 RSDSVEKKISKLDAELCKYKDQIKKTRPGPA 57 (218)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34566 8999999999999999999999985
No 248
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=26.04 E-value=9.2e+02 Score=26.63 Aligned_cols=45 Identities=16% Similarity=0.381 Sum_probs=26.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007664 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETS 429 (594)
Q Consensus 385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S 429 (594)
..++.-++.|......+...+.-.......+...++...+++..+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sR 260 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESR 260 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888877666666665555555555555555444444433
No 249
>PRK00295 hypothetical protein; Provisional
Probab=25.83 E-value=4.1e+02 Score=22.48 Aligned_cols=50 Identities=28% Similarity=0.196 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 395 IHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444 (594)
Q Consensus 395 ~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ 444 (594)
..++.+||.++-=.+-=..+|-.++..-+.++...+.++..+-.++.++.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34677777776666666666666777666666666666665555555543
No 250
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=25.80 E-value=3.4e+02 Score=27.10 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=41.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLK 434 (594)
Q Consensus 385 ~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~ 434 (594)
..+..|.+.+..++..|+.+++.|+.+...|+..+..++..|++.-.-+.
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999988888886654443
No 251
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.59 E-value=3.8e+02 Score=25.67 Aligned_cols=39 Identities=31% Similarity=0.349 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007664 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRL 426 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~ql 426 (594)
..|+..+..++..|.+++..++.+...|+..|......+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 457888888888888888888888777777776544443
No 252
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.39 E-value=1.1e+03 Score=27.50 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH------HHHHHhhHHHHHHHHHHHHhhH
Q 007664 434 KEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQ------LALANKSKQAAEEEVKSAKSKK 507 (594)
Q Consensus 434 ~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~------L~la~eS~s~~~eeL~a~~a~k 507 (594)
++++.+--.|++-++.-.....++..+.+.--++...|.+-++..+.||+-+ |..+-.-..--.++.+-|++++
T Consensus 298 ~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er 377 (622)
T COG5185 298 KTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQER 377 (622)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3444444455555555444455555555544444444444455555555422 1111111112235677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 508 EAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 508 kelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
..|--.|.-+-.+..+|+.-|.+-+-+++
T Consensus 378 e~L~reL~~i~~~~~~L~k~V~~~~leaq 406 (622)
T COG5185 378 EKLTRELDKINIQSDKLTKSVKSRKLEAQ 406 (622)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhHHHHHH
Confidence 88887777777777777777766555443
No 253
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=25.24 E-value=64 Score=33.83 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=23.4
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHHHhhcCC
Q 007664 238 KQHLESIKKLAKVEAECLRLKAVVRKASP 266 (594)
Q Consensus 238 KQhlEsvKKiakLEaECqRLr~l~rK~lp 266 (594)
.=..+.++||+-||.|..+||+-+=+=-.
T Consensus 115 ~~~~~AlqKIsALEdELs~LRaQIA~IV~ 143 (253)
T PF05308_consen 115 PANEAALQKISALEDELSRLRAQIAKIVA 143 (253)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667889999999999999987766443
No 254
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.20 E-value=2.4e+02 Score=25.00 Aligned_cols=42 Identities=29% Similarity=0.402 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhh
Q 007664 165 KSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKE 218 (594)
Q Consensus 165 ~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kE 218 (594)
+.+|..++.+|+..|. +|..|++.+..||..|+-|=.+|++=
T Consensus 18 k~~Li~ei~~LQ~sL~------------~L~~Rve~Vk~E~~kL~~EN~~Lq~Y 59 (80)
T PF10224_consen 18 KEELIQEILELQDSLE------------ALSDRVEEVKEENEKLESENEYLQQY 59 (80)
T ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666554 78889999999999999998888763
No 255
>PRK11281 hypothetical protein; Provisional
Probab=25.09 E-value=1.5e+03 Score=28.85 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=8.0
Q ss_pred HHHHHHhhcHHHHHHhHH
Q 007664 534 EVEKERALSEENIANFQK 551 (594)
Q Consensus 534 EIekERalS~E~~aKC~~ 551 (594)
+++.=+.+|..+..--+.
T Consensus 283 ~~~~N~~Ls~~L~~~t~~ 300 (1113)
T PRK11281 283 ELEINLQLSQRLLKATEK 300 (1113)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 256
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=25.03 E-value=4.3e+02 Score=22.40 Aligned_cols=66 Identities=26% Similarity=0.337 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQ-----RRLETSQNQLKEAELKLEELETQLAFANKSK 454 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~-----~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk 454 (594)
..|..+..+......++..+...+..+...+.... ..+.....-+..++..+..++.++..+....
T Consensus 5 ~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~ 75 (123)
T PF02050_consen 5 QELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEV 75 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655555555444 3344444444444444444444443333333
No 257
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.88 E-value=1.2e+03 Score=27.37 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 007664 245 KKLAKVEAECLRLKAVVRKAS 265 (594)
Q Consensus 245 KKiakLEaECqRLr~l~rK~l 265 (594)
+.+..++++..+.+.-+++-.
T Consensus 269 ~ei~~le~e~~e~~~~l~~l~ 289 (650)
T TIGR03185 269 RQLKEIEAARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666655544
No 258
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=6.1e+02 Score=24.12 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 509 AAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 509 elEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
+|+-+++.++..+.+|......|+.+++
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~ 101 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLE 101 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666543
No 259
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.72 E-value=3.9e+02 Score=22.46 Aligned_cols=44 Identities=16% Similarity=0.271 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 393 VLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA 436 (594)
Q Consensus 393 ~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Ea 436 (594)
.+..++...+.++..++.....+|++......++...|.+|...
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777777777777776666666666666544
No 260
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=24.39 E-value=9.3e+02 Score=26.13 Aligned_cols=20 Identities=10% Similarity=0.323 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 007664 401 LEEELENMRAEKSELEMDLK 420 (594)
Q Consensus 401 LEeKleklEaEK~eLE~aL~ 420 (594)
|+..+..++.+....|.+|.
T Consensus 176 l~~ql~~~~~~l~~ae~~l~ 195 (444)
T TIGR03017 176 FVQQIAALREDLARAQSKLS 195 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444334444443
No 261
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=24.30 E-value=4.6e+02 Score=22.51 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 510 AESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 510 lEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
++.+...++.++..|..++..++.++.
T Consensus 67 L~~~~~~~~~~i~~l~~~~~~l~~~l~ 93 (106)
T PF01920_consen 67 LEERIEKLEKEIKKLEKQLKYLEKKLK 93 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555544444443
No 262
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=24.23 E-value=1.2e+02 Score=24.11 Aligned_cols=27 Identities=26% Similarity=0.458 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhh
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKE 218 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kE 218 (594)
.+|..++..++.+|..|+.++..|..|
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 478888899999999999999888765
No 263
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.96 E-value=4.7e+02 Score=22.54 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHHHHHHHHHhh
Q 007664 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQY 573 (594)
Q Consensus 514 Le~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e~~~e~~~~~ 573 (594)
|..++.-+..+..+|..|..+|+.-+.-...+...-..|.++..+.+ +|-..|.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~------~e~~~~~ 59 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLK------QERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHHHHHH
No 264
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.88 E-value=1.6e+03 Score=28.65 Aligned_cols=65 Identities=20% Similarity=0.357 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhh------HHHHHHHHHHHHHHhhhHhhhhHHH
Q 007664 104 LSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAR------EEQEQRIQETVSKQNLEWESKKSEL 168 (594)
Q Consensus 104 ~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~r------EEqEqki~eav~kks~e~e~~~~el 168 (594)
|...-.||+.......-.++|+.-|+.-+++-..-++.+| |.+.+.+.+-+.-...|++.++..+
T Consensus 276 V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~ 346 (1074)
T KOG0250|consen 276 VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDL 346 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4444455555555555555666555555555544444444 4455555555555555555554333
No 265
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.75 E-value=1.3e+03 Score=27.51 Aligned_cols=41 Identities=29% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHH
Q 007664 135 CVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDL 175 (594)
Q Consensus 135 CmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~ 175 (594)
|=.+||+.++-+=-..+..+....++.+-.+.+++-+-.-+
T Consensus 110 ~~~sLrq~kds~i~dlQ~q~k~lqrE~~nlkvelelkeekL 150 (654)
T KOG4809|consen 110 CPQSLRQLKDSLLADLQRQAKLLQREEHNLKVELELKEEKL 150 (654)
T ss_pred CcHHHHhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 44555665655555566666666666666665555544433
No 266
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=23.63 E-value=1.4e+03 Score=28.05 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 007664 440 LEELETQLAFANKSKQAVE 458 (594)
Q Consensus 440 L~ELQ~QL~~aN~sk~~~e 458 (594)
+..|..+++.-|.+-+++.
T Consensus 165 ~~kl~~~~qe~naeL~rar 183 (916)
T KOG0249|consen 165 TRKLEEQLEELNAELQRAR 183 (916)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443
No 267
>PRK10698 phage shock protein PspA; Provisional
Probab=23.50 E-value=8e+02 Score=25.04 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=13.0
Q ss_pred HHHHHHhHHHHHHHhhhhHHHH
Q 007664 543 EENIANFQKSKDELSKVKQEIE 564 (594)
Q Consensus 543 ~E~~aKC~~LEeeLsr~k~e~e 564 (594)
......+..+|+.+.+++.+.+
T Consensus 162 ~~a~~~f~rmE~ki~~~Ea~ae 183 (222)
T PRK10698 162 DEAMARFESFERRIDQMEAEAE 183 (222)
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666665544
No 268
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=23.40 E-value=6.5e+02 Score=23.94 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHH
Q 007664 103 ELSTLKQQLKAASQKNSALENRVSHLDGALKECV 136 (594)
Q Consensus 103 E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCm 136 (594)
+.--|.++|.....++..+|-.+...+.||.||=
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele 47 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELE 47 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456778888888888888888888888888874
No 269
>PRK10698 phage shock protein PspA; Provisional
Probab=22.97 E-value=8.2e+02 Score=24.96 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=6.3
Q ss_pred HHHHHHhhhh
Q 007664 551 KSKDELSKVK 560 (594)
Q Consensus 551 ~LEeeLsr~k 560 (594)
.++++|.+.+
T Consensus 205 ~ve~ELa~LK 214 (222)
T PRK10698 205 EISEQLAALK 214 (222)
T ss_pred hHHHHHHHHH
Confidence 3666666666
No 270
>PF15294 Leu_zip: Leucine zipper
Probab=22.93 E-value=9.7e+02 Score=25.82 Aligned_cols=64 Identities=31% Similarity=0.370 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQ---------NQLKEAELKLEELETQLAF 449 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~---------~~L~Eae~kL~ELQ~QL~~ 449 (594)
.+..|.+.+..++..++...-..-.|+..++..|...+.....-+ .++..++.+++-++.+++-
T Consensus 136 rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek 208 (278)
T PF15294_consen 136 RLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEK 208 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHH
Confidence 456677778888888888877777788888888887777322222 2355566666666666443
No 271
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=22.62 E-value=7.5e+02 Score=24.37 Aligned_cols=30 Identities=7% Similarity=0.081 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 007664 477 VVEAEMKTQLALANKSKQAAEEEVKSAKSK 506 (594)
Q Consensus 477 ~~eaEik~~L~la~eS~s~~~eeL~a~~a~ 506 (594)
+++.+|++-...+.+.++.+.++|-.+...
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 136 (155)
T PRK06569 107 SINQNIEDINLAAKQFRTNKSEAIIKLAVN 136 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455566655556666676666666555443
No 272
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=22.61 E-value=1.4e+03 Score=27.67 Aligned_cols=152 Identities=19% Similarity=0.252 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 007664 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVV 478 (594)
Q Consensus 399 aeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~ 478 (594)
..+++++-.|+..|.-|.-..+...+|.++-...++.+|.-+++=+-+|+...+--+ .++-. +..||.|-
T Consensus 107 ~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQ---qells----rtsLETqK--- 176 (861)
T KOG1899|consen 107 PEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQ---QELLS----RTSLETQK--- 176 (861)
T ss_pred hHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHH---HHHHh----hhhHHHHH---
Confidence 467788888888888888777777788887777777777777666666554443211 11111 01111100
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHH----HHHhHHHHH
Q 007664 479 EAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEEN----IANFQKSKD 554 (594)
Q Consensus 479 eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~----~aKC~~LEe 554 (594)
|++--+.. ...=.+-+++.++.+-|-+++..+.++..+. .+--.++..||....-. ..-.--|.+
T Consensus 177 -------lDLmaevS-eLKLkltalEkeq~e~E~K~R~se~l~qevn---~~kv~e~~~erlqye~klkstk~e~a~L~E 245 (861)
T KOG1899|consen 177 -------LDLMAEVS-ELKLKLTALEKEQNETEKKLRLSENLMQEVN---QSKVGEVVQERLQYETKLKSTKGEMAPLRE 245 (861)
T ss_pred -------hHHHHHHH-HhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHhhcccccchhhhHHH
Confidence 11111111 1112233456666677777777777777665 34445566666543211 111234667
Q ss_pred HHhhhhHHHHHHHHHHH
Q 007664 555 ELSKVKQEIELQHEVKL 571 (594)
Q Consensus 555 eLsr~k~e~e~~~e~~~ 571 (594)
+.+-+..|+.-+++.-.
T Consensus 246 q~~eK~~e~~rl~~~lv 262 (861)
T KOG1899|consen 246 QRSEKNDEEMRLLRTLV 262 (861)
T ss_pred HHhhhhhHHHHHHHHHH
Confidence 77777766666655544
No 273
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=22.58 E-value=1.2e+03 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 419 LKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 419 L~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
+.-++.+++....++.++...|..+|..
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~ 271 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLKIQHI 271 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444556666666666666666666555
No 274
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=22.24 E-value=1.6e+03 Score=28.06 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH--------------------------------HHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMD--------------------------------LKESQRRLETSQNQL 433 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~a--------------------------------L~~~~~qle~S~~~L 433 (594)
...+.-+.++.++-.|+-|+.--.+-+...+.| +. .+..-.+.+|
T Consensus 446 ~f~A~~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~~A~~llR~~p~q~~~a---q~~~~lr~~l 522 (1480)
T COG3096 446 TFQAKEEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRHLA---EQVQPLRMRL 522 (1480)
T ss_pred HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHhChhhHHHH---HhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH--HHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHH
Q 007664 434 KEAELKLEELETQLAFANKSKQAVEVEMK--AAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAE 511 (594)
Q Consensus 434 ~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve--~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelE 511 (594)
.++++++.--|+.-.++++=.+....-+. ..+.-+.+++..|+.+.++ +.-+.+-.+..-++.+.+.+.+..+.
T Consensus 523 ~eLEqr~~qQqsa~~Ll~~f~kr~~~~l~ae~lE~~~~e~eal~E~ls~~----~s~~~EqR~~lRq~~e~L~~~~~~~~ 598 (1480)
T COG3096 523 SELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDS----VSNAREQRMALRQEQEQLQSRIQSLM 598 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH--------------HHHHHHHHHHHHHhhHHHHHHHHhhc---HHHHHHhHHHHHHHhhhhHHHHHHHHHHHhhh
Q 007664 512 SRLRA--------------VEAEMETLRSKVISLEDEVEKERALS---EENIANFQKSKDELSKVKQEIELQHEVKLQYL 574 (594)
Q Consensus 512 sqLe~--------------~EaEa~~L~~KV~sLE~EIekERalS---~E~~aKC~~LEeeLsr~k~e~e~~~e~~~~~~ 574 (594)
.+.-. .=.+...-..-+..+...+++||.++ .++.++-..|+++++|.. .
T Consensus 599 ~~AP~Wl~Aq~ALe~L~eQSGe~~~dSq~V~~~MQ~~L~~Ere~t~~rD~l~~~r~~ld~qI~RLs-------------q 665 (1480)
T COG3096 599 QRAPVWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVERDELGARKNALDEEIERLS-------------Q 665 (1480)
T ss_pred hhccHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------C
Q ss_pred hcCccccchh
Q 007664 575 AGSNQELKIN 584 (594)
Q Consensus 575 ~~s~~elKiK 584 (594)
++.+.|+.++
T Consensus 666 P~GseD~RL~ 675 (1480)
T COG3096 666 PGGSEDQRLN 675 (1480)
T ss_pred CCCCccHHHH
No 275
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=22.09 E-value=2.1e+02 Score=27.05 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=8.9
Q ss_pred HHHHHHHhhHHHHHHHHh
Q 007664 523 TLRSKVISLEDEVEKERA 540 (594)
Q Consensus 523 ~L~~KV~sLE~EIekERa 540 (594)
.|...|..||..+..||+
T Consensus 50 dL~rrIkMLE~aLkqER~ 67 (134)
T PF08232_consen 50 DLKRRIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555555555544
No 276
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=21.96 E-value=8.9e+02 Score=25.01 Aligned_cols=109 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 007664 427 ETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSK 506 (594)
Q Consensus 427 e~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~eeL~a~~a~ 506 (594)
.....++..++..+..++.|+..+......++.++..+.........++..++.+..+.-.+.+. .-.-..+++.....
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~-g~is~~~~~~a~~~ 154 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKK-GLISREELDHARKA 154 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHC-CCcCHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhhHHHHH
Q 007664 507 KEAAESRLRAVEA-------------------EMETLRSKVISLEDEVE 536 (594)
Q Consensus 507 kkelEsqLe~~Ea-------------------Ea~~L~~KV~sLE~EIe 536 (594)
+.....++..+.. ++..+..++...+..+.
T Consensus 155 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~ 203 (334)
T TIGR00998 155 LLSAKAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALK 203 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh
No 277
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=21.87 E-value=1.3e+03 Score=27.77 Aligned_cols=48 Identities=33% Similarity=0.512 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA 436 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Ea 436 (594)
.++......+..+++++++++.+...|+--+.+.+..++....+|..+
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777777777766666666555555444
No 278
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.73 E-value=1.6e+03 Score=27.97 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhhHHHhHHHHH
Q 007664 81 DLVKQHAKVAEEAVSGWEKAENELS 105 (594)
Q Consensus 81 ~lvkqh~KvaeEAv~GwEKae~E~~ 105 (594)
|+.+--.-++-++|.|-.-|..+.+
T Consensus 332 dIltesiitvAevVRgn~~nQ~~F~ 356 (970)
T KOG0946|consen 332 DILTESIITVAEVVRGNARNQDEFA 356 (970)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHh
Confidence 5666666777889999998888765
No 279
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=21.42 E-value=1.5e+03 Score=27.29 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=13.6
Q ss_pred ccccchhHHHHHHhhcCCCCCCC
Q 007664 345 DINLMDDFLEMERLAALPDTESR 367 (594)
Q Consensus 345 di~LMDDFlEMEkLA~l~~~~~~ 367 (594)
.=.+..++.+|.-.-..+....+
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~ 138 (670)
T KOG0239|consen 116 LSELNMALLESVEELSQAEEDNP 138 (670)
T ss_pred hhhhhhhhhhhhHhhhhhhcccc
Confidence 33477778877766555444433
No 280
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.37 E-value=9.4e+02 Score=25.05 Aligned_cols=17 Identities=6% Similarity=0.180 Sum_probs=9.1
Q ss_pred ccccchhHHHHHHhhcC
Q 007664 345 DINLMDDFLEMERLAAL 361 (594)
Q Consensus 345 di~LMDDFlEMEkLA~l 361 (594)
=+-++|-.-+|=+-..+
T Consensus 56 lllfiDsvr~i~~~~~~ 72 (216)
T KOG1962|consen 56 LLLFIDSVRRIQKYVSE 72 (216)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 34456666666554333
No 281
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=21.37 E-value=5.8e+02 Score=22.59 Aligned_cols=56 Identities=25% Similarity=0.348 Sum_probs=36.1
Q ss_pred hhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHH
Q 007664 125 VSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQ 180 (594)
Q Consensus 125 v~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~ 180 (594)
+..|=.|=+++-.=+..+|....++|.+|-...-.+.+..+...+..+.....+..
T Consensus 6 Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~ 61 (105)
T PF03179_consen 6 IQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAE 61 (105)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555666666777888888888888888877887777777777766655544
No 282
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.34 E-value=5.2e+02 Score=22.07 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=7.5
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 007664 409 RAEKSELEMDLKESQRRLET 428 (594)
Q Consensus 409 EaEK~eLE~aL~~~~~qle~ 428 (594)
++++..|...|..+.+++..
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~ 23 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSV 23 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 283
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=21.02 E-value=5.4e+02 Score=22.16 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 505 a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
.....+..+...++.....+..-+...+.-+.
T Consensus 72 ~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~ 103 (127)
T smart00502 72 NKLKVLEQQLESLTQKQEKLSHAINFTEEALN 103 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455777777777788888888887777665
No 284
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=20.80 E-value=1.4e+03 Score=26.94 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007664 481 EMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK 527 (594)
Q Consensus 481 Eik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~K 527 (594)
|++-+|-....+......+++.++.++-++..-+..++.|++.||.+
T Consensus 258 el~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 258 ELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 44555666667777777788888888888888899999999988875
No 285
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.74 E-value=1.5e+03 Score=27.34 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHH-------HHhhhHhhhhHHHHHH
Q 007664 104 LSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVS-------KQNLEWESKKSELESK 171 (594)
Q Consensus 104 ~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~-------kks~e~e~~~~elE~k 171 (594)
...++.-|..+..-+..+.+. .. -..|...+.+|....+ -.+.|..++. ..|.++..++..+..-
T Consensus 87 l~~i~~~l~~~~~l~~~l~~~-~~-~~~L~~~~~~l~~~~~-l~~~i~~~id~~g~i~d~aS~~L~~ir~~~~~~ 158 (771)
T TIGR01069 87 ILVIQNALKTVKHLKVLSEHV-LD-LEILFHLRLNLITLPP-LENDIIACIDDDGKVKDGASEELDAIRESLKAL 158 (771)
T ss_pred HHHHHHHHHHHHHHHHHHhcc-cc-chHHHHHHhcCCCcHH-HHHHHHHHhCCCCEECCCcCHHHHHHHHHHHHH
Confidence 444444454444433333321 10 1344555544443322 3344444442 2344555555444433
No 286
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=20.28 E-value=4.7e+02 Score=21.18 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=20.4
Q ss_pred HHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664 489 ANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (594)
Q Consensus 489 a~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E 534 (594)
|..+-.-....+..++.....|+.....+..++..|...+..|..+
T Consensus 17 Ar~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 17 ARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444333334444444444444444444444444444444444443
No 287
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.24 E-value=7.9e+02 Score=23.71 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=47.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHH
Q 007664 470 VAESKLSVVEAEMKTQLALANKS---KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI 546 (594)
Q Consensus 470 ~lEskl~~~eaEik~~L~la~eS---~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~ 546 (594)
.+..+++--..|+.++-...... -+-.-+.|.++..+...+...+.........++..+..+..+..+-|..-..+.
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445554443322221 124455666677777777777777777777777777777777666666655555
Q ss_pred HHhHH
Q 007664 547 ANFQK 551 (594)
Q Consensus 547 aKC~~ 551 (594)
.++..
T Consensus 133 ~~~~~ 137 (177)
T PF13870_consen 133 QQGGL 137 (177)
T ss_pred HhcCC
Confidence 44433
No 288
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.06 E-value=1e+03 Score=27.43 Aligned_cols=49 Identities=18% Similarity=0.350 Sum_probs=29.7
Q ss_pred hhhhHhhHhHHHHHHHhhcccchHHHHHHHHHHHHHhhhHHHhHHHHHHHHHH
Q 007664 58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQ 110 (594)
Q Consensus 58 ~~~~~k~LnekLs~al~~~~~Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~ 110 (594)
-...++.+-+|+++|+.++..=|.+++ .-.-+..+|=.+..=+.-||+-
T Consensus 30 w~~~~~~ir~ki~~a~~~~p~~~~~~~----~l~~~~i~Y~~c~~i~~iL~~t 78 (507)
T PF05600_consen 30 WQKKLKAIREKINAAIQDMPEHDEIVQ----LLSGSYINYFHCKRIVEILKQT 78 (507)
T ss_pred HHHHHHHHHHHHHHHHHhCcchHHHHH----hcccCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999883333322 2123444666655444444444
Done!