Query 007664
Match_columns 594
No_of_seqs 110 out of 121
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 07:26:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.0 0.0095 3.3E-07 55.2 26.7 91 386-476 10-100 (284)
2 1c1g_A Tropomyosin; contractIl 97.8 0.02 6.8E-07 53.0 26.6 92 390-481 7-98 (284)
3 3na7_A HP0958; flagellar bioge 96.8 0.32 1.1E-05 48.0 23.1 60 391-450 27-86 (256)
4 2v71_A Nuclear distribution pr 96.7 0.22 7.7E-06 48.3 20.7 157 392-566 20-180 (189)
5 1i84_S Smooth muscle myosin he 96.3 0.017 5.7E-07 68.4 11.7 9 247-255 537-545 (1184)
6 1i84_S Smooth muscle myosin he 96.1 0.016 5.6E-07 68.4 10.1 21 390-410 858-878 (1184)
7 2efr_A General control protein 95.6 1.5 5.2E-05 41.2 21.2 58 494-558 73-130 (155)
8 1go4_E MAD1 (mitotic arrest de 95.6 0.026 8.9E-07 49.8 7.0 71 192-265 15-95 (100)
9 3na7_A HP0958; flagellar bioge 95.5 2.1 7.1E-05 42.3 21.5 31 397-427 19-49 (256)
10 3vkg_A Dynein heavy chain, cyt 95.0 2.1 7.1E-05 56.0 24.1 63 391-457 1898-1960(3245)
11 3o0z_A RHO-associated protein 95.0 2.3 7.7E-05 40.7 18.7 135 58-220 11-153 (168)
12 3u1c_A Tropomyosin alpha-1 cha 94.8 0.86 2.9E-05 39.7 14.1 38 497-534 64-101 (101)
13 3u1c_A Tropomyosin alpha-1 cha 93.8 0.95 3.3E-05 39.4 12.3 87 386-479 13-99 (101)
14 2efr_A General control protein 93.6 4.8 0.00016 37.9 19.5 38 498-535 112-149 (155)
15 2dfs_A Myosin-5A; myosin-V, in 93.2 1.6 5.5E-05 51.6 16.7 27 509-535 1020-1046(1080)
16 2fxo_A Myosin heavy chain, car 92.8 5.3 0.00018 35.9 18.2 30 389-418 13-42 (129)
17 3u59_A Tropomyosin beta chain; 92.4 3.1 0.0001 36.0 13.3 78 386-463 13-90 (101)
18 3u59_A Tropomyosin beta chain; 91.0 4.2 0.00014 35.1 12.7 86 391-476 11-96 (101)
19 2dfs_A Myosin-5A; myosin-V, in 90.8 3.3 0.00011 49.0 15.6 28 434-461 924-951 (1080)
20 3o0z_A RHO-associated protein 90.1 14 0.00046 35.4 18.1 37 498-534 97-133 (168)
21 2b9c_A Striated-muscle alpha t 89.6 8.1 0.00028 35.9 14.1 93 417-534 31-123 (147)
22 3oja_B Anopheles plasmodium-re 89.2 6.4 0.00022 42.1 15.0 27 397-423 457-483 (597)
23 3vkg_A Dynein heavy chain, cyt 88.8 19 0.00064 47.6 21.0 65 390-457 1914-1978(3245)
24 2b9c_A Striated-muscle alpha t 88.4 6.5 0.00022 36.5 12.6 54 422-482 57-110 (147)
25 2eqb_B RAB guanine nucleotide 86.4 11 0.00036 33.2 11.9 67 386-452 2-69 (97)
26 2fxo_A Myosin heavy chain, car 86.3 18 0.00061 32.4 17.3 78 402-479 12-89 (129)
27 1ic2_A Tropomyosin alpha chain 85.4 9.1 0.00031 31.8 10.7 22 388-409 12-33 (81)
28 3ol1_A Vimentin; structural ge 83.8 19 0.00065 32.0 12.7 90 97-210 15-104 (119)
29 1ic2_A Tropomyosin alpha chain 82.3 13 0.00045 30.8 10.4 46 401-446 4-49 (81)
30 3a7p_A Autophagy protein 16; c 81.8 9.8 0.00033 35.8 10.3 98 165-263 37-137 (152)
31 3hnw_A Uncharacterized protein 81.5 15 0.0005 33.7 11.3 59 387-445 66-124 (138)
32 2v66_B Nuclear distribution pr 80.4 32 0.0011 30.8 13.6 87 387-473 8-98 (111)
33 3swk_A Vimentin; cytoskeleton, 76.2 25 0.00085 29.8 10.3 78 392-483 3-80 (86)
34 3qh9_A Liprin-beta-2; coiled-c 75.7 22 0.00074 30.4 9.6 58 389-446 19-76 (81)
35 3tnu_B Keratin, type II cytosk 73.7 49 0.0017 29.4 12.8 46 423-468 28-73 (129)
36 3bas_A Myosin heavy chain, str 73.7 40 0.0014 28.4 12.2 35 387-421 12-46 (89)
37 3ol1_A Vimentin; structural ge 73.3 49 0.0017 29.3 15.3 83 387-483 18-100 (119)
38 3hnw_A Uncharacterized protein 73.2 24 0.00083 32.3 10.2 60 397-456 69-128 (138)
39 3tnu_A Keratin, type I cytoske 72.3 46 0.0016 29.8 11.7 46 423-468 30-75 (131)
40 3oja_B Anopheles plasmodium-re 71.4 85 0.0029 33.4 15.6 35 405-439 451-485 (597)
41 3bas_A Myosin heavy chain, str 71.1 47 0.0016 28.1 10.9 44 403-446 14-57 (89)
42 2ocy_A RAB guanine nucleotide 70.6 71 0.0024 30.0 17.4 38 446-483 52-89 (154)
43 3q8t_A Beclin-1; autophagy, AT 70.6 51 0.0018 28.4 13.4 78 386-463 8-85 (96)
44 3swy_A Cyclic nucleotide-gated 68.5 21 0.00073 27.4 7.3 35 400-434 2-36 (46)
45 1d7m_A Cortexillin I; coiled-c 68.2 61 0.0021 28.3 14.0 76 395-470 3-85 (101)
46 3s4r_A Vimentin; alpha-helix, 67.9 57 0.002 27.9 11.6 76 390-468 10-86 (93)
47 3tnu_A Keratin, type I cytoske 65.5 19 0.00064 32.3 7.6 66 501-566 34-103 (131)
48 3swk_A Vimentin; cytoskeleton, 64.9 63 0.0022 27.3 10.4 17 509-525 67-83 (86)
49 2e7s_A RAB guanine nucleotide 64.3 8.3 0.00028 35.7 5.1 17 467-483 61-77 (135)
50 3mq9_A Bone marrow stromal ant 62.1 1.5E+02 0.0052 30.7 15.8 32 424-455 397-428 (471)
51 3swf_A CGMP-gated cation chann 61.4 24 0.00083 29.6 6.9 44 400-446 4-47 (74)
52 3mq9_A Bone marrow stromal ant 58.9 1.7E+02 0.0059 30.3 15.5 24 513-536 444-467 (471)
53 1x79_B RAB GTPase binding effe 58.8 80 0.0027 28.3 10.3 93 95-209 6-104 (112)
54 3a7p_A Autophagy protein 16; c 53.7 83 0.0028 29.6 9.9 61 386-446 65-125 (152)
55 3mq7_A Bone marrow stromal ant 53.7 1.3E+02 0.0045 27.3 14.5 90 420-537 21-110 (121)
56 3ni0_A Bone marrow stromal ant 53.3 45 0.0016 29.3 7.5 51 514-564 34-84 (99)
57 1wt6_A Myotonin-protein kinase 49.5 1.2E+02 0.0042 25.8 9.4 39 498-536 31-69 (81)
58 2v66_B Nuclear distribution pr 47.3 1.6E+02 0.0053 26.4 15.6 99 396-536 3-101 (111)
59 2v71_A Nuclear distribution pr 47.0 2.1E+02 0.0071 27.7 20.9 31 386-416 7-37 (189)
60 1gu4_A CAAT/enhancer binding p 43.3 24 0.00083 29.6 4.2 30 192-221 39-68 (78)
61 3htk_A Structural maintenance 41.4 1.2E+02 0.004 23.2 8.2 50 397-446 6-55 (60)
62 4h22_A Leucine-rich repeat fli 38.7 2.1E+02 0.0071 25.4 10.2 63 386-448 20-82 (103)
63 4fla_A Regulation of nuclear P 38.6 2.4E+02 0.0083 26.1 13.7 103 351-460 41-143 (152)
64 3tnu_B Keratin, type II cytosk 38.4 2.1E+02 0.0072 25.3 12.5 63 386-451 33-95 (129)
65 1hjb_A Ccaat/enhancer binding 37.7 31 0.0011 29.5 4.0 28 192-219 39-66 (87)
66 2no2_A HIP-I, huntingtin-inter 37.5 2.1E+02 0.0072 25.1 14.2 25 486-510 77-101 (107)
67 3cl3_D NF-kappa-B essential mo 34.2 43 0.0015 30.8 4.6 39 517-555 53-91 (130)
68 2e7s_A RAB guanine nucleotide 33.6 1.4E+02 0.0047 27.6 7.9 10 436-445 72-81 (135)
69 2v4h_A NF-kappa-B essential mo 33.0 2.7E+02 0.0092 24.9 12.5 28 390-417 25-52 (110)
70 3trt_A Vimentin; cytoskeleton, 32.1 1.7E+02 0.0059 23.4 7.5 26 512-537 49-74 (77)
71 4gkw_A Spindle assembly abnorm 30.6 3.3E+02 0.011 25.3 19.5 50 506-555 99-148 (167)
72 3s4r_A Vimentin; alpha-helix, 29.9 2.6E+02 0.0088 23.8 11.5 26 457-482 14-39 (93)
73 2oto_A M protein; helical coil 28.7 3.3E+02 0.011 24.6 18.9 11 544-554 142-152 (155)
74 2no2_A HIP-I, huntingtin-inter 28.5 3E+02 0.01 24.1 12.8 76 405-483 24-99 (107)
75 1m1j_B Fibrinogen beta chain; 27.5 6.2E+02 0.021 27.5 17.1 27 510-536 166-192 (464)
76 1dh3_A Transcription factor CR 27.5 51 0.0017 25.7 3.4 28 192-219 25-52 (55)
77 3mq7_A Bone marrow stromal ant 27.4 2.5E+02 0.0085 25.5 8.2 41 517-560 44-84 (121)
78 1m1j_C Fibrinogen gamma chain; 26.8 1.4E+02 0.0047 31.9 7.7 110 76-216 23-132 (409)
79 2i1j_A Moesin; FERM, coiled-co 26.1 95 0.0032 34.2 6.5 27 235-267 174-200 (575)
80 1gk4_A Vimentin; intermediate 26.0 2.8E+02 0.0096 22.9 8.2 54 499-552 2-59 (84)
81 1t3j_A Mitofusin 1; coiled coi 26.0 1.6E+02 0.0054 25.8 6.6 57 149-221 33-89 (96)
82 4etp_A Kinesin-like protein KA 25.7 1.7E+02 0.0059 30.7 8.2 50 397-446 4-53 (403)
83 2yy0_A C-MYC-binding protein; 25.5 80 0.0027 24.6 4.2 34 386-419 16-49 (53)
84 1wt6_A Myotonin-protein kinase 25.5 3.1E+02 0.011 23.3 9.3 29 503-531 43-71 (81)
85 1jnm_A Proto-oncogene C-JUN; B 25.3 78 0.0027 24.8 4.2 29 192-220 25-53 (62)
86 1x79_B RAB GTPase binding effe 25.2 3.7E+02 0.013 24.0 12.6 33 388-420 5-37 (112)
87 2ocy_A RAB guanine nucleotide 24.8 4.3E+02 0.015 24.7 18.6 71 386-467 17-87 (154)
88 4dzn_A Coiled-coil peptide CC- 24.6 75 0.0026 22.4 3.4 24 193-216 6-29 (33)
89 2wt7_A Proto-oncogene protein 24.1 85 0.0029 24.8 4.2 28 192-219 26-53 (63)
90 1ci6_A Transcription factor AT 24.0 1.3E+02 0.0046 23.8 5.4 30 507-536 25-54 (63)
91 1x8y_A Lamin A/C; structural p 23.9 3.1E+02 0.011 22.8 8.6 22 389-410 3-24 (86)
92 3oja_A Leucine-rich immune mol 23.7 6.2E+02 0.021 26.2 13.4 23 512-534 435-457 (487)
93 2i1j_A Moesin; FERM, coiled-co 23.7 86 0.0029 34.5 5.6 9 314-322 236-244 (575)
94 1ci6_A Transcription factor AT 23.6 87 0.003 24.9 4.2 29 192-220 26-54 (63)
95 1gd2_E Transcription factor PA 23.5 1.2E+02 0.004 25.0 5.0 41 169-221 28-68 (70)
96 3efg_A Protein SLYX homolog; x 22.6 2.2E+02 0.0075 23.6 6.6 52 394-445 12-63 (78)
97 2l5g_A GPS2 protein, G protein 22.2 1.1E+02 0.0036 22.8 4.0 27 389-415 8-34 (38)
98 2eqb_B RAB guanine nucleotide 22.1 4E+02 0.014 23.3 12.4 13 504-516 82-94 (97)
99 2v4h_A NF-kappa-B essential mo 21.8 4.3E+02 0.015 23.6 10.3 41 520-560 63-103 (110)
100 3oja_A Leucine-rich immune mol 21.8 6.8E+02 0.023 25.9 15.2 33 397-429 354-386 (487)
101 2wq1_A General control protein 21.4 83 0.0028 22.7 3.2 20 243-262 12-31 (33)
102 1go4_E MAD1 (mitotic arrest de 21.3 1.6E+02 0.0054 25.9 5.7 34 504-537 11-44 (100)
103 4etp_A Kinesin-like protein KA 20.9 2.4E+02 0.0084 29.6 8.2 33 387-419 8-40 (403)
104 2oqq_A Transcription factor HY 20.7 2.8E+02 0.0095 21.0 6.0 35 398-432 5-39 (42)
105 3htk_A Structural maintenance 20.1 2.9E+02 0.01 20.9 8.4 50 412-461 7-56 (60)
106 1kd8_B GABH BLL, GCN4 acid bas 20.0 1.1E+02 0.0037 22.5 3.6 33 104-136 3-35 (36)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.96 E-value=0.0095 Score=55.15 Aligned_cols=91 Identities=20% Similarity=0.301 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
.+..+++.+..++..++.++..+......++..+..+...+......+..+...+..++.++..+......++.++..+.
T Consensus 10 ~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (284)
T 1c1g_A 10 MLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLN 89 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777666666666666666666666655555555555544
Q ss_pred Hhhhhhhhhhh
Q 007664 466 AARGVAESKLS 476 (594)
Q Consensus 466 ~~~~~lEskl~ 476 (594)
.....+...+.
T Consensus 90 ~~~~~~~~~~~ 100 (284)
T 1c1g_A 90 RRIQLFEEELD 100 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444433333
No 2
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.82 E-value=0.02 Score=52.99 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~ 469 (594)
.+..+..++..+...+..+..+...++..+......+......+..+...+..++.++..+......+...+..+.....
T Consensus 7 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 1c1g_A 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVA 86 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred hhhhhhhhHHHH
Q 007664 470 VAESKLSVVEAE 481 (594)
Q Consensus 470 ~lEskl~~~eaE 481 (594)
.+..++..+..+
T Consensus 87 ~~~~~~~~~~~~ 98 (284)
T 1c1g_A 87 SLNRRIQLFEEE 98 (284)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.80 E-value=0.32 Score=48.04 Aligned_cols=60 Identities=8% Similarity=0.118 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA 450 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~a 450 (594)
+..+..++..|+..+..+......+...+.....++......+..+..++...+.+|+.+
T Consensus 27 ~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v 86 (256)
T 3na7_A 27 IREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEI 86 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 333334444444444444444444444444445555555555555555555555555554
No 4
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.74 E-value=0.22 Score=48.26 Aligned_cols=157 Identities=18% Similarity=0.259 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 007664 392 EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVA 471 (594)
Q Consensus 392 E~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~l 471 (594)
..+.+++..++..|......=.+||..|- .+|..+..+...+..++.-|..+++.....-... ..+.
T Consensus 20 ~~~~q~~~~le~El~EFqesSrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~----------~~e~ 86 (189)
T 2v71_A 20 MKYKQSFQEARDELVEFQEGSRELEAELE---AQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ----------YAQS 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHH
Confidence 33344444444444433333333443332 3344444444444444444444433333322222 1223
Q ss_pred hhhhhhHHHHHHHHHHHHHhhHH----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHH
Q 007664 472 ESKLSVVEAEMKTQLALANKSKQ----AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIA 547 (594)
Q Consensus 472 Eskl~~~eaEik~~L~la~eS~s----~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~a 547 (594)
...+..++.||..+.. .+..-. ..+..-+-++...+...+-+.+++.-......++.+||.+++ || ..+..
T Consensus 87 ~~~~~~Lq~el~~l~~-~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~-EK---e~l~~ 161 (189)
T 2v71_A 87 YKQVSVLEDDLSQTRA-IKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD-EK---ESLLV 161 (189)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHC
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHH
Confidence 3345556666554332 222222 334444556788888999999999999999999999999998 44 46788
Q ss_pred HhHHHHHHHhhhhHHHHHH
Q 007664 548 NFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 548 KC~~LEeeLsr~k~e~e~~ 566 (594)
.|+-|.+++.-.++|+.+.
T Consensus 162 ~~QRLkdE~rDLk~El~v~ 180 (189)
T 2v71_A 162 SVQRLKDEARDLRQELAVR 180 (189)
T ss_dssp CC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8889999988888665543
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.29 E-value=0.017 Score=68.36 Aligned_cols=9 Identities=44% Similarity=0.859 Sum_probs=6.9
Q ss_pred HHHHHHHHH
Q 007664 247 LAKVEAECL 255 (594)
Q Consensus 247 iakLEaECq 255 (594)
++-|+.||.
T Consensus 537 l~lLdee~~ 545 (1184)
T 1i84_S 537 LALLDEECW 545 (1184)
T ss_dssp HHHHHHTTS
T ss_pred hhhhhhhhC
Confidence 577888885
No 6
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.06 E-value=0.016 Score=68.40 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007664 390 ELEVLIHRTAELEEELENMRA 410 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEa 410 (594)
++..+..++..++.++..++.
T Consensus 858 El~~L~~eL~el~~~L~~le~ 878 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEA 878 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444433333333
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=95.62 E-value=1.5 Score=41.24 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhh
Q 007664 494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSK 558 (594)
Q Consensus 494 s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr 558 (594)
..|..+++.+..+.++.+.|.+.++.-+..|...|.-||+++..++. ++..+.++|-.
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke-------k~~~i~~eLd~ 130 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL-------KYKAISEEMKQ 130 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 46888899999999999999999999999999999999999997753 44444444443
No 8
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=95.60 E-value=0.026 Score=49.84 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhhhhhh----------HHHHHhHHhHHhHHHHHHHHHHHHHHHHHH
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTK----------AAETASKQHLESIKKLAKVEAECLRLKAVV 261 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere~s~~----------aae~a~KQhlEsvKKiakLEaECqRLr~l~ 261 (594)
..|..++++++.||..|+-++..|.=+|+=|+.--+|+.. =|..|..|+- +.|.+|.+||.|||..+
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~---~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLR---EDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999988887788652 2444544443 77899999999999999
Q ss_pred hhcC
Q 007664 262 RKAS 265 (594)
Q Consensus 262 rK~l 265 (594)
|+--
T Consensus 92 ~~lE 95 (100)
T 1go4_E 92 RAME 95 (100)
T ss_dssp TTCC
T ss_pred HHHh
Confidence 8743
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.55 E-value=2.1 Score=42.26 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLE 427 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle 427 (594)
++..|...+..+-.+...++..+...+..+.
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~ 49 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAIL 49 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.03 E-value=2.1 Score=56.04 Aligned_cols=63 Identities=17% Similarity=0.363 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~ 457 (594)
|+.+..=...|.+|-..+...+.-++.-| .+|..+..++.+++.+|.++|-+|...+..-..+
T Consensus 1898 Leli~~y~~ll~~K~~el~~~~~rl~~GL----~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~ 1960 (3245)
T 3vkg_A 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGL----KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQK 1960 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556666666666666666666 3667777777777777777777777665554444
No 11
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.01 E-value=2.3 Score=40.69 Aligned_cols=135 Identities=21% Similarity=0.291 Sum_probs=87.7
Q ss_pred hhhhHhhHhHHHHHHHhhcccchHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHH
Q 007664 58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVR 137 (594)
Q Consensus 58 ~~~~~k~LnekLs~al~~~~~Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmr 137 (594)
++.++..+|+||-+- -|++.-|-|..+|+..-.++++. .+..+.++++.|..+--.-=+
T Consensus 11 LekQL~E~n~kLk~E------------------sE~~~rlkK~~tEl~k~~~~~E~---~~rELq~~~~~L~~~k~~Lek 69 (168)
T 3o0z_A 11 LQKQLEEANDLLRTE------------------SDTAVRLRKSHTEMSKSISQLES---LNRELQERNRILENSKSQTDK 69 (168)
T ss_dssp THHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 678899999998654 57788899999998877777774 445566777777766444333
Q ss_pred HHHH--hhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhh-h-hhhHHHHHHHHHHHHhhhhhh----
Q 007664 138 QLRQ--AREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAA-A-SADRDLCSKLEAAEKQNSALK---- 209 (594)
Q Consensus 138 QLr~--~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~-a-~~~~~L~~rLes~EKen~sLk---- 209 (594)
++-. +.=++|++-.--- .-+..+|+.++.-|...|...+.--. + .....|..|+-.+||+.+++-
T Consensus 70 e~~~LQa~L~qEr~~r~q~-------se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~ 142 (168)
T 3o0z_A 70 DYYQLQAILEAERRDRGHD-------SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLN 142 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3332 2222333222111 22335667777777666665543221 1 223689999999999999999
Q ss_pred HHHHHHHhhhh
Q 007664 210 LELLSLVKELE 220 (594)
Q Consensus 210 yE~~~l~kELe 220 (594)
|+|.+++--++
T Consensus 143 ~eLKalQ~~~e 153 (168)
T 3o0z_A 143 YKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88988876554
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=94.77 E-value=0.86 Score=39.68 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=29.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E 534 (594)
.+.|.....+....+.....+++++..|..+|-+||++
T Consensus 64 ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe 101 (101)
T 3u1c_A 64 LEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE 101 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34455556666667778888999999999999999863
No 13
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.83 E-value=0.95 Score=39.40 Aligned_cols=87 Identities=17% Similarity=0.283 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
.++.|.+.++.+...++.++...+......+-.+...+..+......|.-++..|.+.+..|+........+ +
T Consensus 13 ~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a-------E 85 (101)
T 3u1c_A 13 MLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKA-------E 85 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 456666666666666666666665555555555555555555555555544444444444444443333333 3
Q ss_pred HhhhhhhhhhhhHH
Q 007664 466 AARGVAESKLSVVE 479 (594)
Q Consensus 466 ~~~~~lEskl~~~e 479 (594)
+...-|.+|+.+++
T Consensus 86 ~ev~~L~RriqllE 99 (101)
T 3u1c_A 86 SEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 33333455555444
No 14
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=93.65 E-value=4.8 Score=37.88 Aligned_cols=38 Identities=34% Similarity=0.442 Sum_probs=19.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EI 535 (594)
..|.+...+++.+...|..+=.++..+..+..-|+.+|
T Consensus 112 d~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~ 149 (155)
T 2efr_A 112 DELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEV 149 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 34444444555555555555555555555555554444
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.20 E-value=1.6 Score=51.63 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 509 AAESRLRAVEAEMETLRSKVISLEDEV 535 (594)
Q Consensus 509 elEsqLe~~EaEa~~L~~KV~sLE~EI 535 (594)
.|+.++..++.|...|+..++-|+..|
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~ 1046 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELNRRI 1046 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666433
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.76 E-value=5.3 Score=35.87 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMD 418 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~a 418 (594)
.|+..+..++..|.+++.+.+..+.+++..
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~ 42 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEK 42 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666555555444443
No 17
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=92.41 E-value=3.1 Score=35.99 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA 463 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~ 463 (594)
.++.|.+.+..+...++.++...+......+-.+...+..+......+..++..+.+.+..|+........++.+|.+
T Consensus 13 ~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 13 MLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887777777777777777777777777777777777777776666665555544444444
No 18
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=91.02 E-value=4.2 Score=35.13 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 007664 391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGV 470 (594)
Q Consensus 391 lE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~ 470 (594)
+..+..+......+++.++......+.........+...++.+.-++..+...+.+|..++......+-....+++...-
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444444443333333333333333333
Q ss_pred hhhhhh
Q 007664 471 AESKLS 476 (594)
Q Consensus 471 lEskl~ 476 (594)
|.+|+.
T Consensus 91 LnRriq 96 (101)
T 3u59_A 91 LNRRIQ 96 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.81 E-value=3.3 Score=49.01 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007664 434 KEAELKLEELETQLAFANKSKQAVEVEM 461 (594)
Q Consensus 434 ~Eae~kL~ELQ~QL~~aN~sk~~~e~~v 461 (594)
..++.++.+||..|+..++.+..+..++
T Consensus 924 ~~LE~kl~eLq~rL~~~e~~n~~L~~~~ 951 (1080)
T 2dfs_A 924 IGLENKIMQLQRKIDEQNKEYKSLLEKM 951 (1080)
T ss_dssp ---------------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777776666655554443
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.07 E-value=14 Score=35.39 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=26.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E 534 (594)
..+..+..+.+.+..++..+..+...|..+|..||.+
T Consensus 97 ~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 97 ARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566777777888888888888888776
No 21
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=89.59 E-value=8.1 Score=35.86 Aligned_cols=93 Identities=26% Similarity=0.341 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHH
Q 007664 417 MDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAA 496 (594)
Q Consensus 417 ~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~ 496 (594)
++..++.+-.....++-..-+.++..|..||..+...-.. +..+..+...||..++++
T Consensus 31 k~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aee-------adrKyeE~~RKl~~~E~d--------------- 88 (147)
T 2b9c_A 31 KAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED-------ADRKYEEVARKLVIIESD--------------- 88 (147)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHH---------------
Confidence 3344444444445555555566666666665554443333 233333444444444444
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007664 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534 (594)
Q Consensus 497 ~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~E 534 (594)
|.+....-..+++++..++.++..+.+.+.+||.-
T Consensus 89 ---LeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 89 ---LERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 22333344445666666666666666777776643
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.20 E-value=6.4 Score=42.06 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQ 423 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~ 423 (594)
.+..++.++.+++.+....+..+...+
T Consensus 457 e~~~~~~~i~~l~~~~~~~~~~l~~~~ 483 (597)
T 3oja_B 457 EVNELRAEVQQLTNEQIQQEQLLQGLH 483 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.82 E-value=19 Score=47.57 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~ 457 (594)
|+...+.++.-=-.||.......++|+..|...+-+|+.... +++..|.++..+-..|+..+..+
T Consensus 1914 el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~---ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1914 QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNE---QANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333344555555666666666666666665543 44555666666655565555433
No 24
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=88.41 E-value=6.5 Score=36.47 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 007664 422 SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM 482 (594)
Q Consensus 422 ~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEi 482 (594)
...+|...++...+++.+..|....|..+.+.... ++.+...+++++.-++.++
T Consensus 57 lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLer-------aeeRae~aE~k~~eLEeeL 110 (147)
T 2b9c_A 57 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLER-------AEERAELSEGKCAELEEEL 110 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666655554444444444 4444444444444444443
No 25
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.36 E-value=11 Score=33.22 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=53.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL-AFANK 452 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL-~~aN~ 452 (594)
|+..+++.++.++..|+..+..++.++..|...|.+-+..-.........++..|++|...| +.||.
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~ 69 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANN 69 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678999999999999999999999999998898888877777788888888888888775 22444
No 26
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.34 E-value=18 Score=32.39 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=41.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 007664 402 EEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE 479 (594)
Q Consensus 402 EeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~e 479 (594)
+..+.+++.+...+...|................+.+..+.|+.||+.-.+.-..++..+........+|+++|.-+.
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~ 89 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMN 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455444444444444444555667777777777666555555555555555555555444443
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.41 E-value=9.1 Score=31.77 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007664 388 KAELEVLIHRTAELEEELENMR 409 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklE 409 (594)
+.|.+.+..+...++.+++..+
T Consensus 12 k~e~d~a~~~~~~~e~~l~~~e 33 (81)
T 1ic2_A 12 KLDKENALDRAEQAEADKKAAE 33 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333
No 28
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.84 E-value=19 Score=31.98 Aligned_cols=90 Identities=21% Similarity=0.299 Sum_probs=65.0
Q ss_pred HHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHH
Q 007664 97 WEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQ 176 (594)
Q Consensus 97 wEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e~~ 176 (594)
|.-=++++..|++|+++++..+..++-.+.++-+++... |. |=|.|. ..+..+|..+.-+.
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edf----k~-KyE~E~--------------~~r~~~E~di~~lr 75 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRL----RE-KLQEEM--------------LQREEAENTLQSFR 75 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-hhHHHH--------------HHHHHHHHHHHHhh
Confidence 444578899999999999999998877766666655443 21 112222 13456688888888
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhH
Q 007664 177 KKLQTAKSEAAASADRDLCSKLEAAEKQNSALKL 210 (594)
Q Consensus 177 ~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLky 210 (594)
+.++.+. ...-+|..+++++..|..+||.
T Consensus 76 K~lD~~~-----l~r~dLE~~iesL~eEl~FLKk 104 (119)
T 3ol1_A 76 QDVDNAS-----LARLDLERKVESLQEEIAFLKK 104 (119)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 8877554 4557899999999999999984
No 29
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=82.32 E-value=13 Score=30.78 Aligned_cols=46 Identities=11% Similarity=0.241 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 401 LEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 401 LEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
+..|+..|+.+++...-.+..++.++.....+...++..+..|+..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kK 49 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKK 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556666666655444444444444444444444444444444444
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=81.83 E-value=9.8 Score=35.85 Aligned_cols=98 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhHhHHhhhhhhhHHHHHhHHhHHhH
Q 007664 165 KSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESI 244 (594)
Q Consensus 165 ~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeiR~~Ere~s~~aae~a~KQhlEsv 244 (594)
|..+|+++.++....-.+...|.++.+.++...+..+++++..|+-.+..+..+|.-++.--+. .+..=.+-.-|+..+
T Consensus 37 Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~-l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 37 RNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTER-LNAALISGTIENNVL 115 (152)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 5677888888877776666665555556666677777777777776666666665555433222 222223344444444
Q ss_pred -HHHHHHHHHHHHH--HHHHhh
Q 007664 245 -KKLAKVEAECLRL--KAVVRK 263 (594)
Q Consensus 245 -KKiakLEaECqRL--r~l~rK 263 (594)
.|+.+|++|=+.| |-|.||
T Consensus 116 E~kl~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 116 QQKLSDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999998766 445444
No 31
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=81.48 E-value=15 Score=33.74 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~ 445 (594)
+-.|+-.++.+...|+..++.+..|...|...|...+.+++.....+.++..+..+||.
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555554444444444444444444443333333333333333
No 32
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=80.37 E-value=32 Score=30.77 Aligned_cols=87 Identities=26% Similarity=0.261 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAE----KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK 462 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaE----K~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve 462 (594)
|.....-+...+..+..|+.....+ ...|+..+...+...+..+..++++++.-.+|.++--.+..|...++.++.
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n 87 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLN 87 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHH
Confidence 4444555555666666666665543 445777777777777777777888888888888887777777777777777
Q ss_pred HHHHhhhhhhh
Q 007664 463 AAIAARGVAES 473 (594)
Q Consensus 463 ~~~~~~~~lEs 473 (594)
.++++..-||+
T Consensus 88 ~aiErnalLE~ 98 (111)
T 2v66_B 88 QAIERNAFLES 98 (111)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655444
No 33
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=76.21 E-value=25 Score=29.76 Aligned_cols=78 Identities=19% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 007664 392 EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVA 471 (594)
Q Consensus 392 E~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~l 471 (594)
+.++.|+..+...=-++..+.+.+..+....+.+++.=...-..+++.++-|+.-++.++=.+- .|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~--------------dL 68 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARL--------------DL 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH--------------HH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------HH
Confidence 3444455444444444555555555555555555555555555666666666666665555544 45
Q ss_pred hhhhhhHHHHHH
Q 007664 472 ESKLSVVEAEMK 483 (594)
Q Consensus 472 Eskl~~~eaEik 483 (594)
|.+|+++..||.
T Consensus 69 E~kvesL~eEl~ 80 (86)
T 3swk_A 69 ERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666653
No 34
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=75.68 E-value=22 Score=30.38 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
...|.+++.|-.|--+++.|+.|+-.-|..|......+...+.+|..-+..+.-||.+
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4667899999999999999999998888888766666655555555544444444444
No 35
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.75 E-value=49 Score=29.44 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 007664 423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (594)
Q Consensus 423 ~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~ 468 (594)
...+..++..+.++...+.-|+.+|+.....+..++..+.+++...
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~ 73 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRG 73 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3444555555566666666677777766666777766666655443
No 36
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=73.66 E-value=40 Score=28.45 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKE 421 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~ 421 (594)
...|+..+..++..+.+++++.+..+.+++.....
T Consensus 12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~ 46 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVT 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777777777776666665543
No 37
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=73.32 E-value=49 Score=29.30 Aligned_cols=83 Identities=19% Similarity=0.286 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA 466 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~ 466 (594)
...++..++.++..+...=-++..+.+.+..++...+.+++.-...-..++..++-|+..++.++=.+-
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~----------- 86 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARL----------- 86 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHH-----------
Confidence 344555555555555544444555555555555555555554444444555555555555554444443
Q ss_pred hhhhhhhhhhhHHHHHH
Q 007664 467 ARGVAESKLSVVEAEMK 483 (594)
Q Consensus 467 ~~~~lEskl~~~eaEik 483 (594)
.||.+++.+..||.
T Consensus 87 ---dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 87 ---DLERKVESLQEEIA 100 (119)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHH
Confidence 45555555666643
No 38
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=73.23 E-value=24 Score=32.28 Aligned_cols=60 Identities=8% Similarity=0.145 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~ 456 (594)
....+..+++.++.+..+++..+.....++...+..+.++...+.+|+.+++.....+..
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555444444444444444444444444444444444443333333333
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=72.33 E-value=46 Score=29.76 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 007664 423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (594)
Q Consensus 423 ~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~ 468 (594)
...+..++..+.++...+.-|+.+|+.....+..++..+.+++...
T Consensus 30 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 30 SELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444555555555555666666776666666777666666554433
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.37 E-value=85 Score=33.36 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=13.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELK 439 (594)
Q Consensus 405 leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~k 439 (594)
.+.++.+..+++..+...+..+......+.....+
T Consensus 451 ~e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~ 485 (597)
T 3oja_B 451 NEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAE 485 (597)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444333333
No 41
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=71.06 E-value=47 Score=28.06 Aligned_cols=44 Identities=16% Similarity=0.156 Sum_probs=16.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 403 EELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 403 eKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
+.+..++.+...+...|................+.+.-++|+.|
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333333333333333333333333333444444444
No 42
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.63 E-value=71 Score=30.02 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=18.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 007664 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK 483 (594)
Q Consensus 446 QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik 483 (594)
++.........+..++......++.+|+...-++.|+.
T Consensus 52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElE 89 (154)
T 2ocy_A 52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 89 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444455555555555555554
No 43
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=70.62 E-value=51 Score=28.35 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=53.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA 463 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~ 463 (594)
.+..+|..+...-+.|...|+.++.+++.+...|...+.+.+....+=..--...+.++.|+-...+....+++++.-
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~ 85 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRY 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888888888876666666554444334445566666666666666666555553
No 44
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=68.53 E-value=21 Score=27.40 Aligned_cols=35 Identities=20% Similarity=0.323 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLK 434 (594)
Q Consensus 400 eLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~ 434 (594)
++|+|+++|+.-.+-|+..|+..-.++..++..|+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999998885
No 45
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=68.23 E-value=61 Score=28.30 Aligned_cols=76 Identities=24% Similarity=0.328 Sum_probs=43.1
Q ss_pred HHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Q 007664 395 IHRTAELEEEL-------ENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467 (594)
Q Consensus 395 ~~qvaeLEeKl-------eklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~ 467 (594)
.++++.|+.-+ +.+-..|.+|+..|...+.+.+.+-..+.+++.++.+.=.-|+.-.=.+-.+++.+--++-+
T Consensus 3 an~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLsKtEKD 82 (101)
T 1d7m_A 3 ANRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKD 82 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhhhhhH
Confidence 34555555532 33455667788888888888887777777777666665554443333333333333333333
Q ss_pred hhh
Q 007664 468 RGV 470 (594)
Q Consensus 468 ~~~ 470 (594)
+.-
T Consensus 83 kAi 85 (101)
T 1d7m_A 83 RAI 85 (101)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=67.91 E-value=57 Score=27.88 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKE-AELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~E-ae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~ 468 (594)
++..+..+.|.+=+||..||.+-..|+..+...+.+ ..+ .+.. -+..+.+|+.+++.+...+..++.++..+....
T Consensus 10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~-~~~--~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQ-GKS--RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888899999998888888888766554 222 2333 367788999998888888888766666544333
No 47
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.47 E-value=19 Score=32.30 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHhhc---HHHHHHhHHHHHHHhhhhHHHHHH
Q 007664 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK-ERALS---EENIANFQKSKDELSKVKQEIELQ 566 (594)
Q Consensus 501 ~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek-ERalS---~E~~aKC~~LEeeLsr~k~e~e~~ 566 (594)
.+...+..++..++..+++|+..+.....+||..|.. |.... ..+..+...||++|.+.+.++.-|
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666666666666666666665532 22222 234445556666666666555544
No 48
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=64.91 E-value=63 Score=27.25 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 007664 509 AAESRLRAVEAEMETLR 525 (594)
Q Consensus 509 elEsqLe~~EaEa~~L~ 525 (594)
.||.+++.+..|+.=|+
T Consensus 67 dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 67 DLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 37777777777765543
No 49
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.33 E-value=8.3 Score=35.66 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=7.7
Q ss_pred hhhhhhhhhhhHHHHHH
Q 007664 467 ARGVAESKLSVVEAEMK 483 (594)
Q Consensus 467 ~~~~lEskl~~~eaEik 483 (594)
.+..+|+...-++.|+.
T Consensus 61 ~R~~aE~~~~~ie~ElE 77 (135)
T 2e7s_A 61 LRTKAEEEADKLNKEVE 77 (135)
T ss_dssp HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 50
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=62.07 E-value=1.5e+02 Score=30.70 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 007664 424 RRLETSQNQLKEAELKLEELETQLAFANKSKQ 455 (594)
Q Consensus 424 ~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~ 455 (594)
+--...+.+|.+++..+..+..|-..||.-.-
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQAATANHTVM 428 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHhhhcchhHH
Confidence 33333444444444455555555444444333
No 51
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=61.42 E-value=24 Score=29.62 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 400 eLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
++|+|+++|+.-.+-|++.|+....++..++..|+ +++..|..+
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLK---qRit~LE~~ 47 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLK---QRLTKVEKF 47 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 58999999999999999999999999999998875 555555555
No 52
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=58.87 E-value=1.7e+02 Score=30.29 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 513 RLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 513 qLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
+++.+|.|+.+|..++.-++++|+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 53
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=58.81 E-value=80 Score=28.29 Aligned_cols=93 Identities=23% Similarity=0.300 Sum_probs=47.8
Q ss_pred hhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHH
Q 007664 95 SGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVD 174 (594)
Q Consensus 95 ~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~kks~e~e~~~~elE~kl~e 174 (594)
+-|+|-.++...|+.+|.....-+--+++- +...+|++...|....... ..- |.-|.+
T Consensus 6 ~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~--------------w~~k~E~~k~qV~~L~~~~-q~s-------E~~L~~ 63 (112)
T 1x79_B 6 DQVKKLQLMLRQANDQLEKTMKDKQELEDF--------------IKQSSEDSSHQISALVLRA-QAS-------EILLEE 63 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHH-------HHHHHH
Confidence 579999999999999999777666555543 5566666666655444322 111 344444
Q ss_pred HHHHHHHhhhhhh------hhhhHHHHHHHHHHHHhhhhhh
Q 007664 175 LQKKLQTAKSEAA------ASADRDLCSKLEAAEKQNSALK 209 (594)
Q Consensus 175 ~~~~L~~~~~e~~------a~~~~~L~~rLes~EKen~sLk 209 (594)
+++....++.... +..+..++..|..+.+||-+|.
T Consensus 64 Lqq~fsq~q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~ 104 (112)
T 1x79_B 64 LQQGLSQAKRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQ 104 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 4444444433221 1223567777888888888874
No 54
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=53.70 E-value=83 Score=29.62 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=50.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
.....+..++...+.|+.++..++.+..+-.+.+...++.+.+.+.++-.++.++..|+.+
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888888888888888888888888888888888888776
No 55
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=53.68 E-value=1.3e+02 Score=27.31 Aligned_cols=90 Identities=22% Similarity=0.300 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHhhHHHHHHH
Q 007664 420 KESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEE 499 (594)
Q Consensus 420 ~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik~~L~la~eS~s~~~ee 499 (594)
.+|++-..-.+++|..+..-|-+-..|-..||.-...+..-|+. +. ..-..+
T Consensus 21 ~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~---ek-------------------------aq~q~~ 72 (121)
T 3mq7_A 21 MEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDA---EK-------------------------AQGQKK 72 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------------------------HHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH-------------------------HHHHHH
Confidence 46667666677777777766767777766666655554222221 00 000112
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 500 VKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (594)
Q Consensus 500 L~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek 537 (594)
++-++.+.+.|..+|..+++|++.|+....-|-..|..
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 23334445556677888888888888877766666543
No 56
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=53.33 E-value=45 Score=29.29 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhhHHHH
Q 007664 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564 (594)
Q Consensus 514 Le~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k~e~e 564 (594)
|...++++.+--..|-.|-+-+.+|++.+.+-..+..+|+.+|....+.++
T Consensus 34 l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 34 LLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999999999999999999999999999999999999999986544
No 57
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.47 E-value=1.2e+02 Score=25.80 Aligned_cols=39 Identities=26% Similarity=0.429 Sum_probs=20.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 498 eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
++|..+.+..-.++++|...+.....|...|..|+.+++
T Consensus 31 EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 31 REMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555544
No 58
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=47.31 E-value=1.6e+02 Score=26.35 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhh
Q 007664 396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475 (594)
Q Consensus 396 ~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl 475 (594)
.+..+|..+...+..|.+.+...+.. ++.. +......||.++......+..+...+..++.+.-.||+
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~-------~~~e---~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER-- 70 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEH-------QYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER-- 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH--
Confidence 45667777777777777666655543 2221 22234457777776667677776666664444444333
Q ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 476 SVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 476 ~~~eaEik~~L~la~eS~s~~~eeL~a~~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
..+...+=|.+++.-...-..+..+||.||.
T Consensus 71 ------------------------------~~R~t~~SLeD~E~k~n~aiErnalLE~El~ 101 (111)
T 2v66_B 71 ------------------------------AKRATIVSLEDFEQRLNQAIERNAFLESELD 101 (111)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223444455566666666677777777776
No 59
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=47.04 E-value=2.1e+02 Score=27.70 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=16.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELE 416 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE 416 (594)
+..-|+.-.......+..++..++.+..+.+
T Consensus 7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFq 37 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSFQEARDELVEFQ 37 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544433
No 60
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=43.31 E-value=24 Score=29.60 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhhhH
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKELEL 221 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELei 221 (594)
..+..+.+.++++|..|+.+|..|.+|+..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~ 68 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELST 68 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788899999999999999998888764
No 61
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=41.40 E-value=1.2e+02 Score=23.23 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
++..++..+..+...+......+......+......|..+...+.++++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333443333333344333
No 62
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=38.73 E-value=2.1e+02 Score=25.37 Aligned_cols=63 Identities=13% Similarity=0.250 Sum_probs=46.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA 448 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~ 448 (594)
.|.-|-.++.=+|.-|..+++.++....++...+.+..+.++..++....+...+..|+.||.
T Consensus 20 QLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 20 QLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666678888888888888887777777777777777777777777777777777643
No 63
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=38.64 E-value=2.4e+02 Score=26.09 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=62.4
Q ss_pred hHHHHHHhhcCCCCCCCCccccCCCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 007664 351 DFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQ 430 (594)
Q Consensus 351 DFlEMEkLA~l~~~~~~~~~~~~~~~sd~~~~~~~~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~ 430 (594)
|-.-++|+|.||..-...+.... ..|. .....+..+++.+. ..|.+-...|++|..+...-..-.......-+
T Consensus 41 Da~vrq~Ia~LP~eVsd~s~l~k--lkDk--~~~e~l~~~veeA~---~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~ 113 (152)
T 4fla_A 41 DATVRQKIASLPQEVQDVSLLEK--ITDK--EAAERLSKTVDEAC---LLLAEYNGRLAAELEDRRQLARMLVEYTQNQK 113 (152)
T ss_dssp HHHHHHHHHTSCGGGTCGGGGGG--CCSH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCccccCHHHHHH--cccH--HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677999999877555443322 1111 11223333333333 34445566677777766666665666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 007664 431 NQLKEAELKLEELETQLAFANKSKQAVEVE 460 (594)
Q Consensus 431 ~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ 460 (594)
.++.+++..+.+-+..++-++.-+..+...
T Consensus 114 ~~l~e~e~~leeyK~Kl~rv~~vkkeL~~h 143 (152)
T 4fla_A 114 DVLSEKEKKLEEYKQKLARVTQVRKELKSH 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888877766655554433
No 64
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=38.36 E-value=2.1e+02 Score=25.28 Aligned_cols=63 Identities=29% Similarity=0.395 Sum_probs=46.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN 451 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN 451 (594)
..+.|+..++..+..|+..++.+.+-++-|+..|.+....+.. ++.-++..+..|..+|..+.
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r 95 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAK 95 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHH
Confidence 4678999999999999999999999999999999888777653 33333444555555544433
No 65
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.70 E-value=31 Score=29.55 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKEL 219 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kEL 219 (594)
..+..+.+.++++|..|+.+|..|.+|+
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~ 66 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSREL 66 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888889999999998877655544
No 66
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=37.51 E-value=2.1e+02 Score=25.06 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=10.4
Q ss_pred HHHHHhhHHHHHHHHHHHHhhHHHH
Q 007664 486 LALANKSKQAAEEEVKSAKSKKEAA 510 (594)
Q Consensus 486 L~la~eS~s~~~eeL~a~~a~kkel 510 (594)
|.....++...-+.+..+.+++..|
T Consensus 77 l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 77 LETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444334444444444433
No 67
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=34.22 E-value=43 Score=30.80 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHH
Q 007664 517 VEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE 555 (594)
Q Consensus 517 ~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEee 555 (594)
....+..|+..+.++|..|.-||.-..+-..|.-.|..-
T Consensus 53 ~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~A 91 (130)
T 3cl3_D 53 HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVA 91 (130)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888877766666655543
No 68
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.55 E-value=1.4e+02 Score=27.58 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 007664 436 AELKLEELET 445 (594)
Q Consensus 436 ae~kL~ELQ~ 445 (594)
++..+++|..
T Consensus 72 ie~ElE~LTa 81 (135)
T 2e7s_A 72 LNKEVEDLTA 81 (135)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333334333
No 69
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=33.00 E-value=2.7e+02 Score=24.94 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 390 ELEVLIHRTAELEEELENMRAEKSELEM 417 (594)
Q Consensus 390 ElE~~~~qvaeLEeKleklEaEK~eLE~ 417 (594)
++..+..++...|+-|.....+.+++..
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ 52 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKE 52 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555554444444443
No 70
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=32.12 E-value=1.7e+02 Score=23.40 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 512 SRLRAVEAEMETLRSKVISLEDEVEK 537 (594)
Q Consensus 512 sqLe~~EaEa~~L~~KV~sLE~EIek 537 (594)
..+.....|+..|+..|.+|+.+|+.
T Consensus 49 ~~l~~~k~Ei~elrr~iq~L~~el~s 74 (77)
T 3trt_A 49 DALRQAKQESTEYRRQVQSLTMEVDA 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667788899999999999988863
No 71
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=30.56 E-value=3.3e+02 Score=25.29 Aligned_cols=50 Identities=28% Similarity=0.386 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHH
Q 007664 506 KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE 555 (594)
Q Consensus 506 ~kkelEsqLe~~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEee 555 (594)
+.++||.-|+..-+=++.|..+|..|-.+++.||.--.+...-+..|.=+
T Consensus 99 KLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~MdSFE~LkvE 148 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMDSFEKLSME 148 (167)
T ss_dssp HTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677777888888899999999999999999998766666555555433
No 72
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=29.94 E-value=2.6e+02 Score=23.79 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHH
Q 007664 457 VEVEMKAAIAARGVAESKLSVVEAEM 482 (594)
Q Consensus 457 ~e~~ve~~~~~~~~lEskl~~~eaEi 482 (594)
+|.++-+-+.+-..||.+=..++.+|
T Consensus 14 LNdRlAsyIdKVR~LEqqN~~Le~~i 39 (93)
T 3s4r_A 14 LNDRFANLIDKVRFLEQQNKILLAEL 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 73
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=28.72 E-value=3.3e+02 Score=24.64 Aligned_cols=11 Identities=0% Similarity=-0.013 Sum_probs=4.7
Q ss_pred HHHHHhHHHHH
Q 007664 544 ENIANFQKSKD 554 (594)
Q Consensus 544 E~~aKC~~LEe 554 (594)
...+|...+++
T Consensus 142 ~~~~k~~~~e~ 152 (155)
T 2oto_A 142 QDYNRANVLEK 152 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 44444444443
No 74
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=28.52 E-value=3e+02 Score=24.08 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=37.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 007664 405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK 483 (594)
Q Consensus 405 leklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~~~~~~lEskl~~~eaEik 483 (594)
...++..|.+|+..+.+++ ..+...+++--..++.|+.+|..-......+...+......-..+.+++..+.+|..
T Consensus 24 ~~e~e~~k~eL~~~~~~~~---~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 24 QVDLEREKKELEDSLERIS---DQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555554433 223333444444455555555555555555555555555555555555555555544
No 75
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=27.53 E-value=6.2e+02 Score=27.46 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 510 AESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 510 lEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
..+.+..++..+..|..||..|+..|.
T Consensus 166 ~~~~i~~L~~~~~~l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 166 IPSSLRVLRAVIDSLHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777788888888888775
No 76
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.51 E-value=51 Score=25.70 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKEL 219 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kEL 219 (594)
.+|..++..++.+|..|+.++..++.++
T Consensus 25 ~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 25 KSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888899999999999999988765
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.38 E-value=2.5e+02 Score=25.52 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 517 VEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 517 ~EaEa~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
.++++.+-...|..|-+-+++|++.+ ..+..+|+.+|....
T Consensus 44 ~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Ln 84 (121)
T 3mq7_A 44 VEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLN 84 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444444455555555555555444 223444444444443
No 78
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=26.83 E-value=1.4e+02 Score=31.94 Aligned_cols=110 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHHHHHHhhhHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Q 007664 76 VSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVS 155 (594)
Q Consensus 76 ~~~Kd~lvkqh~KvaeEAv~GwEKae~E~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCmrQLr~~rEEqEqki~eav~ 155 (594)
|.-.|-|.|++..| ...+..|+..|+.+.+....+.+ |=.+++.|+.+ ++-+..-..+.+.
T Consensus 23 C~i~d~L~k~e~~V-----------~~~l~~LE~~l~elsn~ts~v~~----Lvk~iq~~~~~----~Q~~~~d~~e~~t 83 (409)
T 1m1j_C 23 CGIADFFNKYRLTT-----------DGELLEIEGLLQQATNSTGSIEY----LIQHIKTIYPS----EKQTLPQSIEQLT 83 (409)
T ss_dssp THHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHSCS----STTCCSSCHHHHH
T ss_pred ccHHHHHHHHHhcc-----------hhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhccc----ccCCCCCchhhHH
Q ss_pred HHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007664 156 KQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLV 216 (594)
Q Consensus 156 kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~ 216 (594)
++++........||..+.....++. .|+..|.+....+..|+-.|..|.
T Consensus 84 q~skkml~~~~~~e~~~~~~~~~i~------------~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 84 QKSKKIIEEIIRYENTILAHENTIQ------------QLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHH------------HHHHHHHhhHHHHHHHHHHHHHHH
No 79
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=26.13 E-value=95 Score=34.21 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=15.1
Q ss_pred HHhHHhHHhHHHHHHHHHHHHHHHHHHhhcCCC
Q 007664 235 TASKQHLESIKKLAKVEAECLRLKAVVRKASPN 267 (594)
Q Consensus 235 ~a~KQhlEsvKKiakLEaECqRLr~l~rK~lp~ 267 (594)
..|++| +-+...+|+.+=|.. ++ ++|+
T Consensus 174 ~~hk~l----~G~s~~eA~~~yL~~-a~-~lp~ 200 (575)
T 2i1j_A 174 NWWQEH----RGMLREDAMMEYLKI-AQ-DLEM 200 (575)
T ss_dssp HHHGGG----TTCCHHHHHHHHHHH-HT-TSTT
T ss_pred HHHHHc----cCCCHHHHHHHHHHH-HH-hccc
Confidence 455554 334566777776665 34 5663
No 80
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=26.05 E-value=2.8e+02 Score=22.92 Aligned_cols=54 Identities=20% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHH
Q 007664 499 EVKSAKSKKEAAESRLRAVEAE----METLRSKVISLEDEVEKERALSEENIANFQKS 552 (594)
Q Consensus 499 eL~a~~a~kkelEsqLe~~EaE----a~~L~~KV~sLE~EIekERalS~E~~aKC~~L 552 (594)
+++.+.+.+..++.++..++.- +..+..+|..||.++..=|.-......-|+.|
T Consensus 2 el~~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~L 59 (84)
T 1gk4_A 2 EVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDL 59 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 81
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=25.97 E-value=1.6e+02 Score=25.76 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhH
Q 007664 149 RIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELEL 221 (594)
Q Consensus 149 ki~eav~kks~e~e~~~~elE~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELei 221 (594)
.+..++..-..+.+....+|+..|..+.+++. +||.+...-.-||.....|..||+.
T Consensus 33 ELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~----------------~LE~iqs~aK~LRnKA~~L~~eLe~ 89 (96)
T 1t3j_A 33 EMATTFARLCQQVDMTQKHLEEEIARLSKEID----------------QLEKMQNNSKLLRNKAVQLESELEN 89 (96)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45555666666666777777777777766544 5666777777778888777777764
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=25.69 E-value=1.7e+02 Score=30.73 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~Q 446 (594)
++..|+.++..++.++.+++..+..++.+++....+|...+...-.|.-+
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555444444444443
No 83
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=25.54 E-value=80 Score=24.56 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDL 419 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL 419 (594)
|...+++.++.++.+|+.|++.|..+..++...|
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888888888888888877766665544
No 84
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=25.46 E-value=3.1e+02 Score=23.32 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007664 503 AKSKKEAAESRLRAVEAEMETLRSKVISL 531 (594)
Q Consensus 503 ~~a~kkelEsqLe~~EaEa~~L~~KV~sL 531 (594)
...+.++.+.+...+..|++.|..++.-|
T Consensus 43 ~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 43 FASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666665554
No 85
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=25.29 E-value=78 Score=24.83 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhhh
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKELE 220 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELe 220 (594)
..|..+.+.++.+|..|+.++..|..|+.
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777888888888888877777653
No 86
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=25.21 E-value=3.7e+02 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007664 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLK 420 (594)
Q Consensus 388 ~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~ 420 (594)
+...+.++.....|.+.|+++.+++.+|+-.+.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~ 37 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIK 37 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888899999999999888876
No 87
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.81 E-value=4.3e+02 Score=24.71 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=31.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 007664 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI 465 (594)
Q Consensus 386 ~l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~ve~~~ 465 (594)
.++-+|-.++..+.....++..++..+.++.. ....+...+.++..|+.+|..-..-...++.....+.
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~-----------l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie 85 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNT-----------LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 85 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH-----------HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444433222 2223334445555555555444443443333333333
Q ss_pred Hh
Q 007664 466 AA 467 (594)
Q Consensus 466 ~~ 467 (594)
..
T Consensus 86 ~E 87 (154)
T 2ocy_A 86 KE 87 (154)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 88
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=24.61 E-value=75 Score=22.44 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHH
Q 007664 193 DLCSKLEAAEKQNSALKLELLSLV 216 (594)
Q Consensus 193 ~L~~rLes~EKen~sLkyE~~~l~ 216 (594)
.|.+.+..+.||++.||+|+-.+.
T Consensus 6 alkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677788888888876653
No 89
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=24.05 E-value=85 Score=24.80 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhh
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKEL 219 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kEL 219 (594)
..|..+.+.++.+|..|+-++..|..|+
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888877666664
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.00 E-value=1.3e+02 Score=23.76 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007664 507 KEAAESRLRAVEAEMETLRSKVISLEDEVE 536 (594)
Q Consensus 507 kkelEsqLe~~EaEa~~L~~KV~sLE~EIe 536 (594)
...++.+...++.+...|..+|..|+.|+.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777777777777777765
No 91
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.95 E-value=3.1e+02 Score=22.79 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 007664 389 AELEVLIHRTAELEEELENMRA 410 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEa 410 (594)
.|++.+.++.+.|+..+..++.
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~ 24 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLED 24 (86)
T ss_dssp ---------CTTHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777666654
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.73 E-value=6.2e+02 Score=26.16 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHH
Q 007664 512 SRLRAVEAEMETLRSKVISLEDE 534 (594)
Q Consensus 512 sqLe~~EaEa~~L~~KV~sLE~E 534 (594)
.-...+..+++.|..+-..|+.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~ 457 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKL 457 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhh
Confidence 33333333444444433333333
No 93
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.66 E-value=86 Score=34.55 Aligned_cols=9 Identities=22% Similarity=0.767 Sum_probs=5.1
Q ss_pred CCCcchhhh
Q 007664 314 PNSSTSWAS 322 (594)
Q Consensus 314 ~scs~SWAs 322 (594)
+.++=+|..
T Consensus 236 ~l~~f~w~~ 244 (575)
T 2i1j_A 236 PKIGFPWSE 244 (575)
T ss_dssp CSEEEEGGG
T ss_pred cceEecHHH
Confidence 445667744
No 94
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.64 E-value=87 Score=24.86 Aligned_cols=29 Identities=38% Similarity=0.410 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHhhhh
Q 007664 192 RDLCSKLEAAEKQNSALKLELLSLVKELE 220 (594)
Q Consensus 192 ~~L~~rLes~EKen~sLkyE~~~l~kELe 220 (594)
..|..+.+.++.+|..|+-++..|..|+.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777766655555543
No 95
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=23.46 E-value=1.2e+02 Score=25.00 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhH
Q 007664 169 ESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELEL 221 (594)
Q Consensus 169 E~kl~e~~~~L~~~~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELei 221 (594)
+..|.+|..++......+.... .+|..|+..+..|..||.+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~------------~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTT------------LENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
No 96
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=22.61 E-value=2.2e+02 Score=23.63 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007664 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445 (594)
Q Consensus 394 ~~~qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~ 445 (594)
+..++.+||.|+-=.+--..+|-.++..-+.++...+.++..+-.++.+++.
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777777766666666666666666666666666666666555555443
No 97
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.23 E-value=1.1e+02 Score=22.79 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 007664 389 AELEVLIHRTAELEEELENMRAEKSEL 415 (594)
Q Consensus 389 ~ElE~~~~qvaeLEeKleklEaEK~eL 415 (594)
.=|+....+|..|++|+..|..||..|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777889999999999999998765
No 98
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.12 E-value=4e+02 Score=23.30 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=5.7
Q ss_pred HhhHHHHHHHHHH
Q 007664 504 KSKKEAAESRLRA 516 (594)
Q Consensus 504 ~a~kkelEsqLe~ 516 (594)
+.+-..|..||..
T Consensus 82 e~kn~~L~~qL~d 94 (97)
T 2eqb_B 82 EILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 3334444445443
No 99
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=21.84 E-value=4.3e+02 Score=23.62 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhHHHHHHHHhhcHHHHHHhHHHHHHHhhhh
Q 007664 520 EMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560 (594)
Q Consensus 520 Ea~~L~~KV~sLE~EIekERalS~E~~aKC~~LEeeLsr~k 560 (594)
.+.-|...|..-..-...||+--+.+..+-..|++++....
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 56677777888888888899888888888888888887654
No 100
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.82 E-value=6.8e+02 Score=25.88 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007664 397 RTAELEEELENMRAEKSELEMDLKESQRRLETS 429 (594)
Q Consensus 397 qvaeLEeKleklEaEK~eLE~aL~~~~~qle~S 429 (594)
++..+++.-..++.++.+++.-+...++.....
T Consensus 354 ~~~~~~~~~~~l~~~~~~le~~~~~~~~~~~~~ 386 (487)
T 3oja_A 354 QVTLRKQAKITLEQKKKALDEQVSNGRRAHAEL 386 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444433345555555555554444444433
No 101
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=21.42 E-value=83 Score=22.73 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 007664 243 SIKKLAKVEAECLRLKAVVR 262 (594)
Q Consensus 243 svKKiakLEaECqRLr~l~r 262 (594)
-+.++.-|+.|..|||.|+-
T Consensus 12 ll~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 12 NTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHHhc
Confidence 46788999999999999874
No 102
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.28 E-value=1.6e+02 Score=25.90 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=29.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007664 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537 (594)
Q Consensus 504 ~a~kkelEsqLe~~EaEa~~L~~KV~sLE~EIek 537 (594)
...+..+..++..++.|-..|+..+..||.+++.
T Consensus 11 ~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778889999999999999999999999964
No 103
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.86 E-value=2.4e+02 Score=29.58 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007664 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDL 419 (594)
Q Consensus 387 l~~ElE~~~~qvaeLEeKleklEaEK~eLE~aL 419 (594)
++.+++.+..++.+|+..++.++.+..++...|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444444
No 104
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.72 E-value=2.8e+02 Score=21.02 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 007664 398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQ 432 (594)
Q Consensus 398 vaeLEeKleklEaEK~eLE~aL~~~~~qle~S~~~ 432 (594)
+.+||.++..++.--++|+-.++-.+++..+.+.-
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45677777777777777777777777776665543
No 105
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.05 E-value=2.9e+02 Score=20.93 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 007664 412 KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM 461 (594)
Q Consensus 412 K~eLE~aL~~~~~qle~S~~~L~Eae~kL~ELQ~QL~~aN~sk~~~e~~v 461 (594)
+..++..+..+........+.+.++..++..+...|+.+.+.+..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi 56 (60)
T 3htk_A 7 KKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQN 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677677777777777777777777777777777666654433
No 106
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=20.02 E-value=1.1e+02 Score=22.52 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhchhhHHHHHH
Q 007664 104 LSTLKQQLKAASQKNSALENRVSHLDGALKECV 136 (594)
Q Consensus 104 ~~~lK~~Le~~~~~~~~~e~rv~hLD~ALKeCm 136 (594)
+..|+...+..+..+..+++.|..|-+-|.+|-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 345677778888999999999999999998883
Done!