Query 007665
Match_columns 594
No_of_seqs 208 out of 2047
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:27:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 7.1E-34 2.4E-38 300.1 24.3 403 19-558 21-435 (451)
2 3o7q_A L-fucose-proton symport 100.0 1.8E-32 6E-37 288.4 28.4 398 21-549 21-425 (438)
3 4gc0_A D-xylose-proton symport 100.0 3.1E-30 1.1E-34 275.6 24.6 435 25-576 11-482 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 1.3E-26 4.3E-31 247.6 30.1 412 46-562 35-477 (491)
5 2gfp_A EMRD, multidrug resista 99.9 1.3E-27 4.5E-32 245.9 11.2 330 40-508 15-352 (375)
6 2cfq_A Lactose permease; trans 99.9 1.3E-24 4.4E-29 227.0 13.4 364 45-560 28-403 (417)
7 2xut_A Proton/peptide symporte 99.9 1.2E-22 4E-27 218.7 27.4 128 46-180 34-174 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.7E-13 5.8E-18 143.8 9.9 178 351-560 27-210 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.4 1.6E-12 5.5E-17 138.1 13.4 176 353-559 14-199 (491)
10 3o7q_A L-fucose-proton symport 99.3 3.8E-12 1.3E-16 133.0 10.9 129 371-506 45-177 (438)
11 2gfp_A EMRD, multidrug resista 99.2 2.8E-12 9.7E-17 131.1 3.5 159 371-560 19-178 (375)
12 2xut_A Proton/peptide symporte 99.2 2.4E-11 8.2E-16 130.2 10.1 173 352-555 12-197 (524)
13 4gc0_A D-xylose-proton symport 98.9 5.9E-09 2E-13 110.4 10.8 108 389-503 57-183 (491)
14 2cfq_A Lactose permease; trans 98.8 5.7E-10 2E-14 115.8 -1.0 169 348-550 3-181 (417)
15 2g9p_A Antimicrobial peptide l 40.2 9.8 0.00033 20.1 0.8 15 78-92 2-16 (26)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=7.1e-34 Score=300.14 Aligned_cols=403 Identities=13% Similarity=0.110 Sum_probs=282.8
Q ss_pred HHHhhhHHHHHHHHHHHHhhh-hhhchhhhHHHHHHHhCCCHhHHHHHHHHHhhhh-hhhhhhhhhhcccCchHHHHHHH
Q 007665 19 QVLRGRWFMMFASFLIMAGAG-ATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGA-NVGVLSGLLAEVTPPWLVLLVGS 96 (594)
Q Consensus 19 ~~~~~~w~~~~~~~l~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~v~~~g~ 96 (594)
...+.+|..+....+..+..+ ..+.++.+.|.+.+++ .+..+.+++.+.+.++. +..+++|+++||+|||++++++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 21 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 334556666665555555544 5677888899999999 99999999766666665 56899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCC-CceeehhHHHHHhhhhHHHHHHHHHH
Q 007665 97 AMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFP-ESRGMMLGLMKGFVGLSGAVFTQIYL 175 (594)
Q Consensus 97 ~l~~ig~~l~~~a~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp-~~rg~~~gi~~~~~glg~~i~~~l~~ 175 (594)
++.+++.+++++.... .++++.+++.|+++|++.+...+...+++.|++| ++|++++|+...+.++|..+++.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 176 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHCHHH---HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHhhhhc---cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888661000 0678889999999999999999999999999998 67999999999999999999876665
Q ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccchh
Q 007665 176 AIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPN-ELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSA 254 (594)
Q Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (594)
.+.+ ..+ |+..|.....+.+...+.
T Consensus 177 ~l~~--------------------------------~~g~w~~~f~~~~~~~~~~~~~---------------------- 202 (451)
T 1pw4_A 177 LGMA--------------------------------WFNDWHAALYMPAFCAILVALF---------------------- 202 (451)
T ss_dssp HHHH--------------------------------HTCCSTTCTHHHHHHHHHHHHH----------------------
T ss_pred HHHH--------------------------------HhccHHHHHHHHHHHHHHHHHH----------------------
Confidence 4332 124 666655221111100000
Q ss_pred hHHHHhhhhcchhhhhhhhhhhhcCCCCCCCcccccccccchhhhhhhhhhhcccccccccccccCCCCCCCCCcCCCCC
Q 007665 255 IAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIF 334 (594)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (594)
..+..+++++ +... ++. ++ .+++.+ . +. +...
T Consensus 203 ----------~~~~~~~~~~-~~~~-----~~~----~~-------------~~~~~~-----------~-~~---~~~~ 234 (451)
T 1pw4_A 203 ----------AFAMMRDTPQ-SCGL-----PPI----EE-------------YKNDYP-----------D-DY---NEKA 234 (451)
T ss_dssp ----------HHHHCCCSST-TTCC-----CSC----TT-------------TCCC------------------------
T ss_pred ----------HHhhccCCHh-hcCC-----CCh----hh-------------hccccc-----------c-cc---hhhh
Confidence 0011111100 0000 000 00 000000 0 00 0000
Q ss_pred CCCCCCCCccHHHhhchHHHHHHHHHHHhhccccceeeccHHHHHHh-cCCCCCcchhhHHHHhhhhhHhhhhhccccHH
Q 007665 335 KPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGES-LGYPQHTINTFVSLVSIWNYFGRVFAGFVSEI 413 (594)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr 413 (594)
+++...++...++.+|+|.+|.+.+..++.......+..+.|.++++ .|+++.+++...++..++.++++++.|++.||
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 314 (451)
T 1pw4_A 235 EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 314 (451)
T ss_dssp ----CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111224778899999988888777766666677788888887 69999999999999999999999999999999
Q ss_pred H--hhhccCCchHHHHHHHHHHH-HHHHHHhcc---CcchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhh
Q 007665 414 I--LLKYKVPRPLIMAISLILSA-VGDVLIAFP---KPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQ 487 (594)
Q Consensus 414 ~--g~r~~~~~~~~~~~~~~~~~-i~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~ 487 (594)
+ ++|+ .+..+.++.. ++++++... +.+...+..++.|++.+...+....+..|.+|++++|+++|+.+
T Consensus 315 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 388 (451)
T 1pw4_A 315 VFRGNRG------ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG 388 (451)
T ss_dssp TSTTCHH------HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HhcCCch------hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence 8 7663 3344444433 555555443 22345556778888888888888899999999999999999999
Q ss_pred ccchh-hhhhhhhhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 007665 488 LASPL-GSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVM 558 (594)
Q Consensus 488 ~~~~l-g~~~~gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 558 (594)
....+ ++.+ +|.+.|.+.|. .+|+..|++.+++.+++.++.+.+.+
T Consensus 389 ~~~~~~g~~~-~~~~~g~l~~~------------------------~g~~~~~~~~~~~~~~~~~~~~~~~~ 435 (451)
T 1pw4_A 389 LFGYLGGSVA-ASAIVGYTVDF------------------------FGWDGGFMVMIGGSILAVILLIVVMI 435 (451)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHS------------------------SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHh------------------------cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 9876 99999999987 57999999999988888877766543
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.8e-32 Score=288.43 Aligned_cols=398 Identities=13% Similarity=0.044 Sum_probs=270.9
Q ss_pred HhhhHHHHHHHHHHHHhhh-hhhchhhhHHHHHHHhCCCHhHHHHHHHHHhhhh-hhhhhhhhhhcccCchHHHHHHHHH
Q 007665 21 LRGRWFMMFASFLIMAGAG-ATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGA-NVGVLSGLLAEVTPPWLVLLVGSAM 98 (594)
Q Consensus 21 ~~~~w~~~~~~~l~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~v~~~g~~l 98 (594)
.+++|..+....+..+..+ ....++.+.|.+++++|+|..+.+++.+.+.++. +..++.|+++||+|||++++++.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 3445554444444444444 4567888899999999999999999766666665 5689999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCC-CceeehhHHHHHhhhhHHHHHHHHHHHH
Q 007665 99 NFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFP-ESRGMMLGLMKGFVGLSGAVFTQIYLAI 177 (594)
Q Consensus 99 ~~ig~~l~~~a~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp-~~rg~~~gi~~~~~glg~~i~~~l~~~l 177 (594)
.+++.++++.. ... ++++.+++.|++.|++.+...+....++.|++| ++|++++|+...+.++|..+++.+.+.+
T Consensus 101 ~~~~~~~~~~~--~~~--~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 101 YALGAALFWPA--AEI--MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHHHHHHH--HHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhc--ccc--ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887332 111 689999999999999999999999999999997 5799999999999999999998877766
Q ss_pred h-CCChH-HHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccchhh
Q 007665 178 Y-GNDAK-SMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAI 255 (594)
Q Consensus 178 ~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (594)
. +.... .-.......+....-..... ..+|+..|.....+. .+..+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~w~~~~~~~~~~~---~~~~~--------------------- 224 (438)
T 3o7q_A 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSL--------VLSVQTPYMIIVAIV---LLVAL--------------------- 224 (438)
T ss_dssp HHTSSCCCCHHHHHHSCHHHHHHHHHHH--------HHHHHHHHHHHHHHH---HHHHH---------------------
T ss_pred HhcccccccccccccCCcchhhhhhhhh--------hhhHHHHHHHHHHHH---HHHHH---------------------
Confidence 5 32210 00000000000000000000 012555554111110 00000
Q ss_pred HHHHhhhhcchhhhhhhhhhhhcCCCCCCCcccccccccchhhhhhhhhhhcccccccccccccCCCCCCCCCcCCCCCC
Q 007665 256 AVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIFK 335 (594)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (594)
.. +..+.+ +.++ + + ..+
T Consensus 225 --------~~-~~~~~p-----------~~~~------------------------------~---~----------~~~ 241 (438)
T 3o7q_A 225 --------LI-MLTKFP-----------ALQS------------------------------D---N----------HSD 241 (438)
T ss_dssp --------HH-HHCCCC-----------CCTT------------------------------T---C----------CCC
T ss_pred --------HH-HHHcCC-----------cccc------------------------------c---c----------ccc
Confidence 00 000000 0000 0 0 000
Q ss_pred CCCCCCCccHHHhhchHHHHHHHHHHHhhccccceeeccHHHH-HHhc-CCCCCcchhhHHHHhhhhhHhhhhhccccHH
Q 007665 336 PPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQI-GESL-GYPQHTINTFVSLVSIWNYFGRVFAGFVSEI 413 (594)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr 413 (594)
+++.......++.+|+|.+|...+..++.......+..+.|.+ .++. |+++.+++...++..++..+++++.|+++||
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r 321 (438)
T 3o7q_A 242 AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR 321 (438)
T ss_dssp SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011112356788999999998888777766666677788888 7776 9999999999999999999999999999999
Q ss_pred HhhhccCCchHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhhccchhh
Q 007665 414 ILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLG 493 (594)
Q Consensus 414 ~g~r~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg 493 (594)
++|| ..+..+.++.+++.+++...+.....+..++.|++.+..++....+..|.+|++ ++.+.++.. ...++
T Consensus 322 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g 393 (438)
T 3o7q_A 322 FAPH------KVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIG 393 (438)
T ss_dssp SCHH------HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHH
T ss_pred hcch------HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHH
Confidence 9887 355566666666666555554444455568889999999999999989999855 888888776 56688
Q ss_pred hhhhhhhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHHHH
Q 007665 494 SYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFG 549 (594)
Q Consensus 494 ~~~~gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 549 (594)
+.+ +|.+.|.+.|.. ++|+..|++.+++.++.
T Consensus 394 ~~~-~~~~~g~l~~~~-----------------------g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 394 GGI-VTPVMGFVSDAA-----------------------GNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHH-HHHHHHHHHHHH-----------------------TSSGGGGHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHh-----------------------cchHHHHHHHHHHHHHH
Confidence 765 899999999882 34888888765544433
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=3.1e-30 Score=275.57 Aligned_cols=435 Identities=14% Similarity=0.100 Sum_probs=262.0
Q ss_pred HHHHHHHHHHHHhhh-hhhchhhhHHHHHHHhCC--------CHhHHHHHHHHHhhhhhh-hhhhhhhhcccCchHHHHH
Q 007665 25 WFMMFASFLIMAGAG-ATYLFGTYSKEIKSTLGY--------DQTTLNLLSTCKDLGANV-GVLSGLLAEVTPPWLVLLV 94 (594)
Q Consensus 25 w~~~~~~~l~~~~~g-~~~~~~~~~~~l~~~~~~--------s~~~~~~~~~~~~~~~~~-~~~~G~l~Dr~G~r~v~~~ 94 (594)
|.+.+.+.+..+..| +...++...|.++++++. +..+.+++.+.+.+|..+ ++++|+++||+|||+++++
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~ 90 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKI 90 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 344333334444445 455667778888888743 234567777777788755 7799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc-----------cCChhHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCC-CceeehhHHHHHh
Q 007665 95 GSAMNFGGYFMIWLAVMKK-----------IAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFP-ESRGMMLGLMKGF 162 (594)
Q Consensus 95 g~~l~~ig~~l~~~a~~~~-----------~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp-~~rg~~~gi~~~~ 162 (594)
+.+++.++.++++++.... ..++++++++++|+++|+|.|...+....++.|+.| ++|++..++...+
T Consensus 91 ~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~ 170 (491)
T 4gc0_A 91 AAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFA 170 (491)
T ss_dssp HHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhh
Confidence 9999999998876421100 012689999999999999999999999999999998 5799999999888
Q ss_pred hhhHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 007665 163 VGLSGAVFTQIYLAIYGN--------DAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLM 234 (594)
Q Consensus 163 ~glg~~i~~~l~~~l~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 234 (594)
..+|..++..+....... .+|++++.+..++.+..++...
T Consensus 171 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 218 (491)
T 4gc0_A 171 IIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLY-------------------------------- 218 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGG--------------------------------
T ss_pred hhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhh--------------------------------
Confidence 878777765554433221 1223333333333222222111
Q ss_pred HHhhhhcccCCCCccccchhhHHHHhhhhcchhhhhhhhhhhhcCCCCCCCcccccccccchhhhhhhhhhhcccccccc
Q 007665 235 GLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQT 314 (594)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (594)
..+|.++|...+.+.++.....++...... .+.+..+.+++ ..
T Consensus 219 ----------------------------------~~peSp~~L~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~--~~ 261 (491)
T 4gc0_A 219 ----------------------------------TVPESPRWLMSRGKQEQAEGILRKIMGNTL-ATQAVQEIKHS--LD 261 (491)
T ss_dssp ----------------------------------GSCCCHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHH--HH
T ss_pred ----------------------------------cCCCChHHHHHcCchhHHHHhHHHhcCCch-hHHHHHHHHHH--HH
Confidence 112222222111110000000000000000 00000000000 00
Q ss_pred cccccCCCCCCCCCcCCCCCCCCCCCCCccHHHhhchHHHHH-HHHHHHhhccccceeeccHHHHHHhcCCCCCcchhhH
Q 007665 315 LQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLI-LFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFV 393 (594)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~ 393 (594)
. .++ .......++.+.... .....+........+..+.+.+.+..+.+........
T Consensus 262 ~------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (491)
T 4gc0_A 262 H------------------GRK-----TGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQT 318 (491)
T ss_dssp H------------------HHH-----HTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred h------------------hhh-----hhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHH
Confidence 0 000 001122223333332 2333333333334445556777777888777777777
Q ss_pred HHHhhhhhHhhhhhccccHHHhhhccCCchHHHHHHHHHHHHHHHHHhc---c-Cc-chHHHHHHHHHHHhhh-hHHHHH
Q 007665 394 SLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAF---P-KP-GSVYVASLLVGFSYGA-QLTLLF 467 (594)
Q Consensus 394 ~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~i~~~~~~~---~-~~-~~~~~~~~l~G~~~g~-~~~~~~ 467 (594)
.+.++...++.++++++.||+|||+ .+..+....+++.+.+.. . .. ....+...++..+.+. ..++.+
T Consensus 319 ~~~~~~~~~~~~~~~~l~dr~Grr~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (491)
T 4gc0_A 319 IIVGVINLTFTVLAIMTVDKFGRKP------LQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSHH------HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcc------hhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8889999999999999999999883 444444444444443321 1 12 2222222333333332 235566
Q ss_pred HHHHHhccCCccccccchhhccchhhhhhhhhhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHH
Q 007665 468 IIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNI 547 (594)
Q Consensus 468 ~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 547 (594)
.+.+|+||.+.|+++.|+.+..+.+++++ ++.+.+.+.+...... ..++...|++.+++++
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~~p~l~~~~~~~~------------------~~~~~~~~~i~~~~~~ 453 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWTFPMMDKNSWLVA------------------HFHNGFSYWIYGCMGV 453 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTHHHHHCHHHHHHH------------------HHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------hhhhhHHHHHHHHHHH
Confidence 88999999999999999999999999976 7777777765422111 1345678889999999
Q ss_pred HHHHHHHHHHhhhhhccchhHHHHhHHHH
Q 007665 548 FGALITFILVMRTRRYYSGDIYKKFKEQI 576 (594)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (594)
++.+..+++.+|||+++.||+++.+++++
T Consensus 454 ~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 454 LAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 99999999999999999988887765443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.95 E-value=1.3e-26 Score=247.61 Aligned_cols=412 Identities=12% Similarity=0.075 Sum_probs=254.1
Q ss_pred hhHHHHHHH-----hCCCHhHHHHHHHHHhhhh-hhhhhhhhhhcc-cCchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 007665 46 TYSKEIKST-----LGYDQTTLNLLSTCKDLGA-NVGVLSGLLAEV-TPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPK 118 (594)
Q Consensus 46 ~~~~~l~~~-----~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr-~G~r~v~~~g~~l~~ig~~l~~~a~~~~~~~~~ 118 (594)
.+.+.++++ +|.|..+.+++.+.+.++. +..++.|+++|| +|||+++..+.++..++.++++++ ++
T Consensus 35 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 107 (491)
T 4aps_A 35 ILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALP-------FG 107 (491)
T ss_dssp HHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSC-------CS
T ss_pred HHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHh-------hh
Confidence 334445555 9999999999666666665 568899999999 899999999999999998776433 67
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHhHHhhcCC-Cc--eeehhHHHHHhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q 007665 119 VWQMCLYICIGANSQNFANTGSLVTCVKNFP-ES--RGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPAL 195 (594)
Q Consensus 119 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp-~~--rg~~~gi~~~~~glg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 195 (594)
++.+++.|+++|+|.+...+....++.|++| ++ |+.+.++...+..+|..+++.+.+.+.+..+|++.+++......
T Consensus 108 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~ 187 (491)
T 4aps_A 108 ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMF 187 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 8889999999999999999999999999997 56 77788888899999999999999988876677777766655544
Q ss_pred HHHHHHHHhccC--CCC-----CCCchhHHHHHHHHHH---HHHHHHHHHHhhhhcccCCCCccccchhhHHHHhhhhcc
Q 007665 196 VSLVFVYTIRPL--KVS-----SHPNELKVFYEYLYIT---ISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPL 265 (594)
Q Consensus 196 ~~l~~~~~~~~~--~~~-----~~~~~~~~f~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (594)
..++...+.++. ++. +....++........+ ...++.++.... .+...+.+.. ..........+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~ 262 (491)
T 4aps_A 188 IGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL-VGWNSLPAYI----NLLTIVAIAIPV 262 (491)
T ss_dssp HHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHH-HSSCCTTHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCcccccch----hhhhHHHHHHHH
Confidence 444433332211 111 0111111111111100 001111111100 0000000000 000000000000
Q ss_pred hhhhhhhhhhhhcCCCCCCCcccccccccchhhhhhhhhhhcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCccH
Q 007665 266 FIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGI 345 (594)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (594)
....+ .++ + ....+
T Consensus 263 ~~~~~----~~~----------------------------------------~--------------~~~~~-------- 276 (491)
T 4aps_A 263 FYFAW----MIS----------------------------------------S--------------VKVTS-------- 276 (491)
T ss_dssp HHHHH----HC---------------------------------------------------------------------
T ss_pred HHHHH----Hhh----------------------------------------c--------------ccccH--------
Confidence 00000 000 0 00000
Q ss_pred HHhhchHHHHHHHHHHHhhccccceeeccHHHHHHh-cCCCCCcchhhHHHHhhhhhHhhhhhccccHHHhhhccCCchH
Q 007665 346 LQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGES-LGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPL 424 (594)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~ 424 (594)
.+..+....+.+.+..++...........++.+.++ .+.+....+...+...++..++.++.+++.||++||+. .+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~-~~~~ 355 (491)
T 4aps_A 277 TEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQP-SSPT 355 (491)
T ss_dssp -----CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC----CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCC-CchH
Confidence 000011122223322222222223344556667765 46666778888999999999999999999999998843 2233
Q ss_pred HHHHHHHHHHHHHHHHhcc----------CcchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhhccchhhh
Q 007665 425 IMAISLILSAVGDVLIAFP----------KPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGS 494 (594)
Q Consensus 425 ~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~ 494 (594)
.+..+.++.+++++++... +.....+..++.|++.+...+....++.|.+|++++|++.|+.+....+|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~ 435 (491)
T 4aps_A 356 KFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGS 435 (491)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 4445666666665544321 234455667888999888888899999999999999999999999999999
Q ss_pred hhhhhhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007665 495 YVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRR 562 (594)
Q Consensus 495 ~~~gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 562 (594)
.+ +|.+.+.+.+. ++...|.+.+++++++.++.+.+.++.++
T Consensus 436 ~i-~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (491)
T 4aps_A 436 AL-NAQLVTLYNAK-------------------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQG 477 (491)
T ss_dssp HH-HHHHGGGGGGS-------------------------STTHHHHHTHHHHHHHHHHHHHC------
T ss_pred HH-HHHHHHHHhcc-------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 88888877654 47778888888888887777666554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.94 E-value=1.3e-27 Score=245.94 Aligned_cols=330 Identities=13% Similarity=-0.004 Sum_probs=237.6
Q ss_pred hhhchhhhHHHHHHHhCCCHhHHHHHHHHHhhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 007665 40 ATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGA-NVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPK 118 (594)
Q Consensus 40 ~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~v~~~g~~l~~ig~~l~~~a~~~~~~~~~ 118 (594)
....+....|.+.+++|.|.++.+++.+...++. +..++.|+++||+|||++++++.++..++.+++.++ ++
T Consensus 15 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------~~ 87 (375)
T 2gfp_A 15 AQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------SS 87 (375)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH-------HH
T ss_pred HHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh-------cc
Confidence 4456677789999999999999999666666555 668999999999999999999999999998887665 78
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHhHHhhcCC-CceeehhHHHHHhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Q 007665 119 VWQMCLYICIGANSQNFANTGSLVTCVKNFP-ESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVS 197 (594)
Q Consensus 119 ~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp-~~rg~~~gi~~~~~glg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 197 (594)
++.+++.|++.|++.+...+....++.|++| ++|+++.++...+.++|..+++.+.+.+.+.
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~----------------- 150 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM----------------- 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----------------
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----------------
Confidence 8999999999999999999999999999996 6899999999999999999988776654432
Q ss_pred HHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccchhhHHHHhhhhcchhhhhhhhhhhh
Q 007665 198 LVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQ 277 (594)
Q Consensus 198 l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (594)
.+|+..|....... .+ ..+......+|+
T Consensus 151 ---------------~~~~~~~~~~~~~~---~~-----------------------------~~~~~~~~~~~~----- 178 (375)
T 2gfp_A 151 ---------------WNWRACYLFLLVLC---AG-----------------------------VTFSMARWMPET----- 178 (375)
T ss_dssp ---------------HHHHHHHHHHHHHH---HH-----------------------------HHCCCCCSSCCC-----
T ss_pred ---------------ccHHHHHHHHHHHH---HH-----------------------------HHHHHHHHCccc-----
Confidence 24554444111110 00 000000111100
Q ss_pred cCCCCCCCcccccccccchhhhhhhhhhhcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCccHHHhhchHHHHHH
Q 007665 278 QRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLIL 357 (594)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 357 (594)
++ . + + .++ ......++.+|+|.+|..
T Consensus 179 -------~~-------------------------------~--~--~--------~~~----~~~~~~~~~~~~~~~~~~ 204 (375)
T 2gfp_A 179 -------RP-------------------------------V--D--A--------PRT----RLLTSYKTLFGNSGFNCY 204 (375)
T ss_dssp -------ST-------------------------------T--T--C--------CCC----CTTTCSTHHHHHHHHHHH
T ss_pred -------CC-------------------------------C--C--c--------ccc----cHHHHHHHHhcCcchHHH
Confidence 00 0 0 0 000 011233678889999888
Q ss_pred HHHHHhhccccceeeccHHHHHHh-cCCCCCcchhhHHHHhhhhhHhhhhhccccHHHhhhccCCchHHHHHHHHHHHHH
Q 007665 358 FLATFCGLGCSLTAIDNLGQIGES-LGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVG 436 (594)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~i~ 436 (594)
.+..++.......+..+.|.+.++ .|+++.+++...+...++..+++++.+++.||++++ ....... ....+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~------~~~~~~~-~~~~~ 277 (375)
T 2gfp_A 205 LLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL------MWQSVIC-CLLAG 277 (375)
T ss_dssp HHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH------HHHHHHH-HHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHH
Confidence 777766655555555666776665 688888899999999999999999999999998763 2211111 11111
Q ss_pred HH--HHhc---cCcchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhhccchhhhhhhhhhHHHhhhhH
Q 007665 437 DV--LIAF---PKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDR 508 (594)
Q Consensus 437 ~~--~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~~~g~l~~~ 508 (594)
.. .... .+.+...+..++.|++.+...+....+..|.+| +++|++.|+.+....+|+.+ +|.+.|.+.+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~ 352 (375)
T 2gfp_A 278 LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGV-LASLSAMLPQT 352 (375)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHC-CSTTCTHHHHH
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHH-HHHHHHHHhcC
Confidence 11 1111 122344566788899999989999999999998 89999999999999999976 89899998776
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.91 E-value=1.3e-24 Score=227.01 Aligned_cols=364 Identities=12% Similarity=0.051 Sum_probs=219.8
Q ss_pred hhhHHHHHHHhCCCHhHHHHHHHHHhhhh-hhhhhhhhhhcccCchHHHHHHHHHHHHHHHHHHH-HHhhccCChhH-HH
Q 007665 45 GTYSKEIKSTLGYDQTTLNLLSTCKDLGA-NVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWL-AVMKKIAKPKV-WQ 121 (594)
Q Consensus 45 ~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~v~~~g~~l~~ig~~l~~~-a~~~~~~~~~~-~~ 121 (594)
+.+...+++++|.|..+.+++.+...++. +.++++|+++||+|||++++++.+++.++...... ++. +.. ..
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 102 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-----PLLQYN 102 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-----HHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 34444467789999999999655555555 66899999999999999999988876553221110 110 111 11
Q ss_pred HHHHHHHHhhhhhhhhhhhHhHHhhcCC---CceeehhHHHHHhhhhHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Q 007665 122 MCLYICIGANSQNFANTGSLVTCVKNFP---ESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSL 198 (594)
Q Consensus 122 l~~~r~l~G~g~g~~~~~~~~~i~~~fp---~~rg~~~gi~~~~~glg~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~l 198 (594)
++..+++.|++.+..++.....+.++.+ ++|+...|....+..+|..+++.+.+.+.+
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~------------------- 163 (417)
T 2cfq_A 103 ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT------------------- 163 (417)
T ss_dssp CCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 2345667777666655554555555554 356888888877777888888766554321
Q ss_pred HHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccchhhHHHHhhhhcchhhhhhhhhhhhc
Q 007665 199 VFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQQ 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (594)
.+|+..|. ..++ ..++..+ . .+..+++++
T Consensus 164 --------------~~~~~~f~---~~~~---------------------------~~~~~~~--~-~~~~~~~~~---- 192 (417)
T 2cfq_A 164 --------------INNQFVFW---LGSG---------------------------CALILAV--L-LFFAKTDAP---- 192 (417)
T ss_dssp --------------HCSHHHHT---TTTT---------------------------TTTTHHH--H-SCSSCCCCS----
T ss_pred --------------hchhHHHH---HHHH---------------------------HHHHHHH--H-HHHcCcccc----
Confidence 13443332 0000 0000000 0 000010000
Q ss_pred CCCCCCCcccccccccchhhhhhhhhhhcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCccHHHhhchHHHHHHH
Q 007665 279 RKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLILF 358 (594)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (594)
+.. + .+++ . ..++ +.......++.+|+|.+|...
T Consensus 193 -----~~~------~------------------------~~~~--~--------~~~~-~~~~~~~~~~~~~~~~~~~~~ 226 (417)
T 2cfq_A 193 -----SSA------T------------------------VANA--V--------GANH-SAFSLKLALELFRQPKLWFLS 226 (417)
T ss_dssp -----CSS------C------------------------SSSS--S--------SSCC-CCCCHHHHHHHTTCHHHHHHH
T ss_pred -----ccc------c------------------------cccc--c--------cccc-ccccHHHHHHHhcCCchhhHH
Confidence 000 0 0000 0 0000 000112346778899988766
Q ss_pred HHHHhhccccceeeccHHHHHHhc-C---CCCCcchhhHHHHhhhhhHhhhhhccccHHHhhhccCCchHHHHHHHHHHH
Q 007665 359 LATFCGLGCSLTAIDNLGQIGESL-G---YPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSA 434 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~-g---~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 434 (594)
+..+........+..++|.++++. + .+....+...++..++..++.++.|+++||++||+ .+..+.++.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~------~l~~~~~~~~ 300 (417)
T 2cfq_A 227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN------ALLLAGTIMS 300 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH------HHHHHHHHHH
Confidence 554433322223334567666543 2 22333466677778889999999999999999873 4455666666
Q ss_pred HHHHHHhccC-cchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchh-hccchhhhhhhhhhHHHhhhhHHHHH
Q 007665 435 VGDVLIAFPK-PGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCG-QLASPLGSYVLNVIVVGRLYDREAMK 512 (594)
Q Consensus 435 i~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~-~~~~~lg~~~~gp~~~g~l~~~~~~~ 512 (594)
++.+++...+ .+.+.+..++.+++.+...+....+..|.+|++.+|+++|.. +....+|+.+ +|.+.|.++|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~-gp~l~G~l~~~---- 375 (417)
T 2cfq_A 301 VRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIF-MSVLAGNMYES---- 375 (417)
T ss_dssp HHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHH-HTHHHHTHHHH----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHH-hhhhHHHHHHh----
Confidence 6655554433 334444555667777666677778999999999999999995 8888899876 99999999887
Q ss_pred hhhhhhcccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007665 513 QLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRT 560 (594)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 560 (594)
.+|...|.+.+++++++.++.+...+++
T Consensus 376 --------------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 376 --------------------IGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp --------------------SHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred --------------------cCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4688899998888888877665544433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.91 E-value=1.2e-22 Score=218.67 Aligned_cols=128 Identities=9% Similarity=-0.030 Sum_probs=105.1
Q ss_pred hhHHHHHHHhC------CCHhHHHHHHHHHhhhh-hhhhhhhhhhccc-CchHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 007665 46 TYSKEIKSTLG------YDQTTLNLLSTCKDLGA-NVGVLSGLLAEVT-PPWLVLLVGSAMNFGGYFMIWLAVMKKIAKP 117 (594)
Q Consensus 46 ~~~~~l~~~~~------~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~-G~r~v~~~g~~l~~ig~~l~~~a~~~~~~~~ 117 (594)
.+.+.+++++| .+..+.+++.+.+.++. +..++.|+++||+ |||+++.++.++..++.++++++ +
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-------~ 106 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-------E 106 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-------S
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-------c
Confidence 34455778899 99999999666666655 5588999999999 99999999999999988877554 5
Q ss_pred -hHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCC-CceeehhHH---HHHhhhhHHHHHHHHHHHHhCC
Q 007665 118 -KVWQMCLYICIGANSQNFANTGSLVTCVKNFP-ESRGMMLGL---MKGFVGLSGAVFTQIYLAIYGN 180 (594)
Q Consensus 118 -~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp-~~rg~~~gi---~~~~~glg~~i~~~l~~~l~~~ 180 (594)
+++.+++.|++.|++.+...+....++.|++| ++|+++.++ ...+..+|..+++.+.+.+.+.
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 78889999999999999999999999999997 568777666 7788888888888766655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.44 E-value=1.7e-13 Score=143.82 Aligned_cols=178 Identities=16% Similarity=0.107 Sum_probs=142.0
Q ss_pred hHHHHHHHHHHHhhccccceeeccHHHHHHhcCCCCCcchhhHHHHhhhhhHhhhhhccccHHHhhhccCCchHHHHHHH
Q 007665 351 SIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISL 430 (594)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~~~~~~~ 430 (594)
.+.++...+..++.......+...+|.+.++. .++.+.+++.++..++..++.+++|+++||+||| ..+..+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r------~~l~~~~ 99 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR------VFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch------HHHHHHH
Confidence 34444555555544443334445567777788 9999999999999999999999999999999988 4667777
Q ss_pred HHHHHHHHHHhc----c-CcchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhhccchhhhhhhhhhHHHhh
Q 007665 431 ILSAVGDVLIAF----P-KPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRL 505 (594)
Q Consensus 431 ~~~~i~~~~~~~----~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~~~g~l 505 (594)
++.+++.++... . +.+.+++..++.|++.+...+...+++.|.+|+++|+++.|+......+|..+ +|.+.+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l 178 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGI-PPLLFLLG 178 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 777777766654 3 34667778899999999999999999999999999999999999999999976 99898888
Q ss_pred hhHHHHHhhhhhhcccccCCCcccccccc-hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007665 506 YDREAMKQLAEKGMTRAMVKDLTCIGRQC-YRLSFTILAGVNIFGALITFILVMRT 560 (594)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~ 560 (594)
.+. .+ |+..|++.++++++..++..+..+++
T Consensus 179 ~~~------------------------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 179 MAW------------------------FNDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp HHH------------------------TCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHH------------------------hccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 766 45 99999999988887777666655543
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.39 E-value=1.6e-12 Score=138.11 Aligned_cols=176 Identities=15% Similarity=0.208 Sum_probs=140.1
Q ss_pred HHHHHHHHHHhhccccceeeccHHHHHHh------cCCCCCcchhhHHHHhhhhhHhhhhhccccHH-HhhhccCCchHH
Q 007665 353 DMLILFLATFCGLGCSLTAIDNLGQIGES------LGYPQHTINTFVSLVSIWNYFGRVFAGFVSEI-ILLKYKVPRPLI 425 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr-~g~r~~~~~~~~ 425 (594)
.+|.+.+..++.....+.....++.+.++ +|+++.+.+...+.+.++..++.+++|+++|| +||| ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r------~~ 87 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR------PA 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH------HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch------HH
Confidence 45555555555444444455556666654 79999999999999999999999999999999 8988 46
Q ss_pred HHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCc--cccccchhhccchhhhhhhhhhHH
Q 007665 426 MAISLILSAVGDVLIAFPK-PGSVYVASLLVGFSYGAQLTLLFIIISELFGLKY--YSTLFNCGQLASPLGSYVLNVIVV 502 (594)
Q Consensus 426 ~~~~~~~~~i~~~~~~~~~-~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~~~gp~~~ 502 (594)
+..+.++..++.+++...+ .+.+++..++.|++.+...+....++.|.+|+++ ++.+++..+....+|..+ +|.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~ 166 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI-APLIV 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHH-HHHHH
Confidence 6777777777777666553 4667778899999999999999999999999988 777888888999999876 99999
Q ss_pred HhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHhh
Q 007665 503 GRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMR 559 (594)
Q Consensus 503 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 559 (594)
+.+.+. .+|+..|++.++..+++.++..+..++
T Consensus 167 ~~l~~~------------------------~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 167 GAAQEA------------------------AGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp HHHHHH------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhh------------------------hhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 999887 579999999888877777666555443
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.32 E-value=3.8e-12 Score=132.99 Aligned_cols=129 Identities=16% Similarity=0.077 Sum_probs=110.7
Q ss_pred eeccHHHHHHhcCCCCCcchhhHHHHhhhhhHhhhhhccccHHHhhhccCCchHHHHHHHHHHHHHHHHH---hcc-Ccc
Q 007665 371 AIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLI---AFP-KPG 446 (594)
Q Consensus 371 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~i~~~~~---~~~-~~~ 446 (594)
.....|.+.+++|+++.+.+++.+...++..++.++.|+++||+||| ..+..+.++.+++.++. ... +.+
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r------~~l~~~~~~~~~~~~~~~~~~~~~~~~ 118 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK------AGIITGLFLYALGAALFWPAAEIMNYT 118 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH------HHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch------HHHHHHHHHHHHHHHHHHhccccccHH
Confidence 33446777788999999999999999999999999999999999988 45677777777776665 433 346
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhhccchhhhhhhhhhHHHhhh
Q 007665 447 SVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLY 506 (594)
Q Consensus 447 ~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~~~g~l~ 506 (594)
.+++..++.|++.+...+....++.|.+|+++|+++.|+.+....+|..+ +|.+.+.+.
T Consensus 119 ~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-g~~~~~~l~ 177 (438)
T 3o7q_A 119 LFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAII-AVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHH-HHHHTTHHH
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 67778899999999999999999999999999999999999999999976 998888887
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.22 E-value=2.8e-12 Score=131.12 Aligned_cols=159 Identities=9% Similarity=0.090 Sum_probs=127.6
Q ss_pred eeccHHHHHHhcCCCCCcchhhHHHHhhhhhHhhhhhccccHHHhhhccCCchHHHHHHHHHHHHHHHHHhcc-CcchHH
Q 007665 371 AIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFP-KPGSVY 449 (594)
Q Consensus 371 ~~~~~~~~~~~~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~ 449 (594)
....+|.+.++.|.|+.+.+...+...++..++.++.|+++||+|||+ .+..+.++..++.++.... +.+.++
T Consensus 19 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (375)
T 2gfp_A 19 YIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP------VILVGMSIFMLATLVAVTTSSLTVLI 92 (375)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch------hHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 334567777888999999999999999999999999999999999884 3345555555555554433 345667
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhhccchhhhhhhhhhHHHhhhhHHHHHhhhhhhcccccCCCccc
Q 007665 450 VASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTC 529 (594)
Q Consensus 450 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 529 (594)
+..++.|++.+...+....++.|.+|+++++++.+.......+|..+ +|.+.+.+.+.
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~--------------------- 150 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLL-APLIGGLLDTM--------------------- 150 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHH-HHHHHHHSSCH---------------------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHh---------------------
Confidence 77889999999999999999999999999999999999999999976 99999998876
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007665 530 IGRQCYRLSFTILAGVNIFGALITFILVMRT 560 (594)
Q Consensus 530 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 560 (594)
.+|+..|++.+++.++..+......+++
T Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 151 ---WNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 4699999988887777665444444443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.21 E-value=2.4e-11 Score=130.21 Aligned_cols=173 Identities=12% Similarity=0.123 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHhhccccceeeccHHHHHH-hcC------CCCCcchhhHHHHhhhhhHhhhhhccccHHH-hhhccCCch
Q 007665 352 IDMLILFLATFCGLGCSLTAIDNLGQIGE-SLG------YPQHTINTFVSLVSIWNYFGRVFAGFVSEII-LLKYKVPRP 423 (594)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr~-g~r~~~~~~ 423 (594)
+.+|.+.+..++.....+.....++.+++ +.| +++.+.+.+.+++.++..++.++.|+++||+ |||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~----- 86 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN----- 86 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----
Confidence 34455555555444444445556666655 578 9999999999999999999999999999999 9873
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CcchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccch---hhccchhhhhhhh
Q 007665 424 LIMAISLILSAVGDVLIAFP--KPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNC---GQLASPLGSYVLN 498 (594)
Q Consensus 424 ~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~lg~~~~g 498 (594)
.+..+.++.+++.+++... +.+.+++..++.|++.+...+...+++.|.+|++++++..+. .+....+|..+ +
T Consensus 87 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~-g 164 (524)
T 2xut_A 87 -TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFF-A 164 (524)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHH-H
T ss_pred -HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHH-H
Confidence 5566767777776666544 345667778899999999999999999999999999876666 78888999875 8
Q ss_pred hhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 007665 499 VIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFI 555 (594)
Q Consensus 499 p~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 555 (594)
|.+.+.+.+. .+|+..|++.+++.+++.+..+.
T Consensus 165 ~~~~~~l~~~------------------------~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 165 SLSMPLLLKN------------------------FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSTHHHHT------------------------SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcc------------------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888776 57999999988887766655443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.86 E-value=5.9e-09 Score=110.41 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=87.6
Q ss_pred chhhHHHHhhhhhHhhhhhccccHHHhhhccCCchHHHHHHHHHHHHHHHHHhc-------------------cCcchHH
Q 007665 389 INTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAF-------------------PKPGSVY 449 (594)
Q Consensus 389 a~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~i~~~~~~~-------------------~~~~~~~ 449 (594)
.+++.+.+.++..+|.+++|+++||+||| ..+.++.++..++.++... .+...++
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~GRk------~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRFGRR------DSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 45677888999999999999999999998 4667777777776665542 1234577
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhhccchhhhhhhhhhHHH
Q 007665 450 VASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVG 503 (594)
Q Consensus 450 ~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~~~g 503 (594)
+.-++.|++.|+..+..+.+++|..|+++|+...++......+|..+ ++.+..
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~ 183 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNY 183 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcch
Confidence 78899999999999999999999999999999999998888888754 553433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.77 E-value=5.7e-10 Score=115.82 Aligned_cols=169 Identities=12% Similarity=0.097 Sum_probs=106.8
Q ss_pred hhchHHHHHHHHHHHhhccccceeeccHHHHHHh-cCCCCCcchhhHHHHhhhhhHhhhhhccccHHHhhhccCCchHHH
Q 007665 348 ALLSIDMLILFLATFCGLGCSLTAIDNLGQIGES-LGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIM 426 (594)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~~~~~~~~ 426 (594)
.+|+|.+|.+...+++...........+|.+.++ .|+|+.+.+.+.+...++..++++++|+++||+|||+ .+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~------~l 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK------YL 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC------HH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH------HH
Confidence 5788999887776665554444455677887775 7999999999999999999999999999999999984 23
Q ss_pred HHHHHHHHH---HHHHHhccC--cchHHHHHHHHHHHhhhh----HHHHHHHHHHhccCCccccccchhhccchhhhhhh
Q 007665 427 AISLILSAV---GDVLIAFPK--PGSVYVASLLVGFSYGAQ----LTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVL 497 (594)
Q Consensus 427 ~~~~~~~~i---~~~~~~~~~--~~~~~~~~~l~G~~~g~~----~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~ 497 (594)
..+..+..+ .+....... .........+.+++.+.. .+....+..+. .++++..+|.......+|..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~~- 153 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV--SRRSNFEFGRARMFGCVGWAL- 153 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH--HHHHTCCHHHHSSSTTTHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh--hhhcccchHHHHHHHHHHHHH-
Confidence 333333222 111111110 001122222333333332 23333333322 246688888888888888865
Q ss_pred hhhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHHHHH
Q 007665 498 NVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGA 550 (594)
Q Consensus 498 gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 550 (594)
+|.+.+.+.+. +|+..|++.++..++..
T Consensus 154 ~~~l~~~l~~~-------------------------~~~~~f~~~~~~~~~~~ 181 (417)
T 2cfq_A 154 GASIVGIMFTI-------------------------NNQFVFWLGSGCALILA 181 (417)
T ss_dssp HHHHHHHHHHH-------------------------CSHHHHTTTTTTTTTHH
T ss_pred HHHHHHHHHHh-------------------------chhHHHHHHHHHHHHHH
Confidence 89898888764 47888877665544433
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=40.25 E-value=9.8 Score=20.12 Aligned_cols=15 Identities=20% Similarity=0.003 Sum_probs=11.9
Q ss_pred hhhhhhcccCchHHH
Q 007665 78 LSGLLAEVTPPWLVL 92 (594)
Q Consensus 78 ~~G~l~Dr~G~r~v~ 92 (594)
+.|.+..+||||.+-
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 468899999998753
Done!