Query 007666
Match_columns 594
No_of_seqs 494 out of 2329
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 07:29:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ejs_A Autocrine motility fact 99.6 8.1E-17 2.8E-21 123.8 4.6 50 544-593 2-51 (58)
2 2ekf_A Ancient ubiquitous prot 99.6 9.3E-17 3.2E-21 124.4 4.5 50 544-593 2-51 (61)
3 4g3o_A E3 ubiquitin-protein li 99.5 1.1E-14 3.6E-19 111.4 4.9 42 552-593 14-55 (58)
4 1x4j_A Ring finger protein 38; 99.2 3.6E-12 1.2E-16 104.2 2.9 50 333-386 21-73 (75)
5 1iym_A EL5; ring-H2 finger, ub 99.2 4.1E-12 1.4E-16 97.3 2.9 47 334-384 4-54 (55)
6 2kiz_A E3 ubiquitin-protein li 99.2 9.2E-12 3.2E-16 99.9 4.4 50 333-386 12-64 (69)
7 2l0b_A E3 ubiquitin-protein li 99.2 5.7E-12 2E-16 107.2 2.9 48 334-385 39-89 (91)
8 2ect_A Ring finger protein 126 99.2 1.5E-11 5E-16 101.2 5.1 50 333-386 13-65 (78)
9 2djb_A Polycomb group ring fin 99.2 1.3E-11 4.5E-16 100.1 4.6 52 334-389 14-66 (72)
10 2ecm_A Ring finger and CHY zin 99.2 9.9E-12 3.4E-16 95.1 3.6 47 334-384 4-54 (55)
11 3ng2_A RNF4, snurf, ring finge 99.2 8.9E-12 3E-16 100.4 3.2 49 334-386 9-64 (71)
12 2ep4_A Ring finger protein 24; 99.2 1.5E-11 5E-16 100.1 4.6 49 334-386 14-65 (74)
13 2ea6_A Ring finger protein 4; 99.2 8.7E-12 3E-16 99.7 3.1 49 333-385 13-68 (69)
14 1chc_A Equine herpes virus-1 r 99.2 1.6E-11 5.6E-16 98.1 4.4 48 334-385 4-52 (68)
15 2ecl_A Ring-box protein 2; RNF 99.2 9.4E-12 3.2E-16 103.6 2.8 49 334-386 14-77 (81)
16 2d8t_A Dactylidin, ring finger 99.1 5.7E-12 1.9E-16 102.0 1.1 49 334-386 14-62 (71)
17 4ayc_A E3 ubiquitin-protein li 99.1 1.9E-11 6.6E-16 111.9 4.4 48 335-386 53-100 (138)
18 1v87_A Deltex protein 2; ring- 99.1 3.2E-11 1.1E-15 106.5 5.0 53 334-386 24-95 (114)
19 2xeu_A Ring finger protein 4; 99.1 1.8E-11 6E-16 96.4 2.8 48 335-386 3-57 (64)
20 2ecy_A TNF receptor-associated 99.1 2.9E-11 1E-15 96.2 4.1 50 334-386 14-63 (66)
21 2ysl_A Tripartite motif-contai 99.1 4.1E-11 1.4E-15 97.0 3.3 53 333-386 18-70 (73)
22 2yur_A Retinoblastoma-binding 99.1 6.7E-11 2.3E-15 96.5 4.6 50 334-385 14-64 (74)
23 2csy_A Zinc finger protein 183 99.1 4.4E-11 1.5E-15 99.2 3.5 47 334-384 14-60 (81)
24 3dpl_R Ring-box protein 1; ubi 99.1 4.5E-11 1.5E-15 104.7 3.4 48 334-385 36-101 (106)
25 1t1h_A Gspef-atpub14, armadill 99.1 6.3E-11 2.2E-15 97.4 3.7 50 334-386 7-56 (78)
26 2ct2_A Tripartite motif protei 99.0 8E-11 2.7E-15 98.7 4.0 53 333-386 13-69 (88)
27 2ecn_A Ring finger protein 141 99.0 3.2E-11 1.1E-15 97.0 1.0 48 334-386 14-61 (70)
28 3lrq_A E3 ubiquitin-protein li 99.0 7.9E-11 2.7E-15 101.9 2.4 49 335-386 22-71 (100)
29 3fl2_A E3 ubiquitin-protein li 99.0 1.8E-10 6.1E-15 103.4 4.7 49 334-385 51-99 (124)
30 2ysj_A Tripartite motif-contai 99.0 2E-10 6.7E-15 90.5 3.8 46 333-379 18-63 (63)
31 2ecv_A Tripartite motif-contai 99.0 3.5E-10 1.2E-14 93.8 5.4 53 334-386 18-72 (85)
32 2egp_A Tripartite motif-contai 99.0 1.1E-10 3.8E-15 95.9 2.2 53 334-386 11-66 (79)
33 3ztg_A E3 ubiquitin-protein li 99.0 1.9E-10 6.4E-15 97.6 3.6 49 334-384 12-61 (92)
34 2ecw_A Tripartite motif-contai 99.0 3.3E-10 1.1E-14 93.9 4.7 53 334-386 18-72 (85)
35 1g25_A CDK-activating kinase a 99.0 2.6E-10 9E-15 90.4 3.8 49 335-386 3-56 (65)
36 2ckl_A Polycomb group ring fin 99.0 2.6E-10 8.8E-15 99.8 3.5 49 334-386 14-63 (108)
37 2y43_A E3 ubiquitin-protein li 98.9 1.9E-10 6.4E-15 99.1 2.4 48 334-385 21-69 (99)
38 2ecj_A Tripartite motif-contai 98.9 3.2E-10 1.1E-14 87.4 3.2 45 334-379 14-58 (58)
39 4a0k_B E3 ubiquitin-protein li 98.9 1.4E-10 4.7E-15 103.2 0.2 48 334-385 47-112 (117)
40 1jm7_A BRCA1, breast cancer ty 98.9 8.4E-10 2.9E-14 96.8 5.1 51 335-386 21-71 (112)
41 3l11_A E3 ubiquitin-protein li 98.9 1.5E-10 5.1E-15 102.4 -0.6 48 335-385 15-62 (115)
42 1z6u_A NP95-like ring finger p 98.9 7.5E-10 2.6E-14 102.9 3.5 50 334-386 77-126 (150)
43 2kr4_A Ubiquitin conjugation f 98.9 9.1E-10 3.1E-14 92.4 3.6 49 334-386 13-61 (85)
44 4ap4_A E3 ubiquitin ligase RNF 98.9 6.9E-10 2.4E-14 99.7 2.8 49 334-386 6-61 (133)
45 1rmd_A RAG1; V(D)J recombinati 98.8 6.5E-10 2.2E-14 98.5 2.1 50 334-386 22-71 (116)
46 2c2l_A CHIP, carboxy terminus 98.8 3.2E-09 1.1E-13 107.4 7.5 50 334-386 207-256 (281)
47 2d8s_A Cellular modulator of i 98.8 1.7E-09 5.7E-14 89.9 4.3 51 334-386 14-71 (80)
48 2ckl_B Ubiquitin ligase protei 98.8 9.4E-10 3.2E-14 103.6 3.1 48 335-385 54-102 (165)
49 2kre_A Ubiquitin conjugation f 98.8 1.3E-09 4.3E-14 94.5 2.9 49 334-386 28-76 (100)
50 1bor_A Transcription factor PM 98.8 1.4E-09 4.8E-14 83.9 2.8 46 334-386 5-50 (56)
51 1e4u_A Transcriptional repress 98.8 4.1E-09 1.4E-13 87.1 5.6 50 334-386 10-63 (78)
52 3hct_A TNF receptor-associated 98.8 1.2E-09 4E-14 97.3 2.4 50 334-386 17-66 (118)
53 1wgm_A Ubiquitin conjugation f 98.8 2.1E-09 7.2E-14 92.7 3.2 49 334-386 21-70 (98)
54 4ap4_A E3 ubiquitin ligase RNF 98.8 1.9E-09 6.4E-14 96.9 2.4 50 333-386 70-126 (133)
55 2y1n_A E3 ubiquitin-protein li 98.7 3.3E-09 1.1E-13 112.2 4.0 49 335-386 332-380 (389)
56 2ct0_A Non-SMC element 1 homol 98.7 5.3E-09 1.8E-13 85.4 3.9 54 334-389 14-68 (74)
57 2vje_B MDM4 protein; proto-onc 98.7 3.5E-09 1.2E-13 83.7 2.7 49 333-385 5-56 (63)
58 2vje_A E3 ubiquitin-protein li 98.7 4E-09 1.4E-13 83.7 2.8 48 334-385 7-57 (64)
59 3knv_A TNF receptor-associated 98.7 1.9E-09 6.6E-14 99.1 0.7 50 333-385 29-78 (141)
60 1jm7_B BARD1, BRCA1-associated 98.7 4.7E-09 1.6E-13 93.2 2.5 46 334-385 21-67 (117)
61 2f42_A STIP1 homology and U-bo 98.6 1.2E-08 4E-13 97.3 3.6 49 335-386 106-154 (179)
62 4ic3_A E3 ubiquitin-protein li 98.6 7.3E-09 2.5E-13 84.5 0.7 44 334-385 23-67 (74)
63 2yu4_A E3 SUMO-protein ligase 98.6 1.5E-08 5.3E-13 86.5 2.1 51 335-385 7-63 (94)
64 2ecg_A Baculoviral IAP repeat- 98.5 3.5E-08 1.2E-12 80.5 2.7 44 335-386 25-69 (75)
65 3hcs_A TNF receptor-associated 98.5 3.2E-08 1.1E-12 93.4 2.4 50 334-386 17-66 (170)
66 2ea5_A Cell growth regulator w 98.5 7.8E-08 2.7E-12 77.2 4.2 46 333-386 13-59 (68)
67 3k1l_B Fancl; UBC, ring, RWD, 98.4 1.2E-07 3.9E-12 97.9 3.0 53 334-386 307-374 (381)
68 2yho_A E3 ubiquitin-protein li 98.3 1.5E-07 5E-12 77.8 0.9 44 335-386 18-62 (79)
69 3htk_C E3 SUMO-protein ligase 98.3 3.2E-07 1.1E-11 91.8 3.5 51 334-386 180-233 (267)
70 2bay_A PRE-mRNA splicing facto 98.3 2.8E-07 9.6E-12 72.3 2.3 48 336-387 4-52 (61)
71 1vyx_A ORF K3, K3RING; zinc-bi 98.2 6.3E-07 2.2E-11 70.1 3.5 50 334-385 5-59 (60)
72 3t6p_A Baculoviral IAP repeat- 98.1 4.4E-07 1.5E-11 95.2 1.5 44 334-385 294-338 (345)
73 1wim_A KIAA0161 protein; ring 98.0 1.9E-06 6.5E-11 73.2 3.0 51 335-385 5-66 (94)
74 3vk6_A E3 ubiquitin-protein li 97.7 1.3E-05 4.6E-10 68.1 3.0 47 337-386 3-50 (101)
75 3nw0_A Non-structural maintena 97.3 0.00014 4.8E-09 72.3 4.0 53 335-389 180-233 (238)
76 2dhy_A CUE domain-containing p 96.8 0.00086 2.9E-08 53.3 3.5 40 555-594 18-58 (67)
77 2di0_A Activating signal coint 96.4 0.0046 1.6E-07 49.4 5.5 42 552-593 10-52 (71)
78 2qho_B E3 ubiquitin-protein li 95.9 0.0094 3.2E-07 43.5 4.6 38 557-594 11-49 (53)
79 1wgl_A TOLL-interacting protei 93.2 0.1 3.4E-06 40.3 4.5 38 557-594 11-49 (59)
80 2jun_A Midline-1; B-BOX, TRIM, 91.7 0.073 2.5E-06 45.0 2.2 31 335-365 3-36 (101)
81 2ko5_A Ring finger protein Z; 91.6 0.062 2.1E-06 45.0 1.6 45 336-386 29-74 (99)
82 1p3q_Q VPS9P, vacuolar protein 91.4 0.19 6.6E-06 37.9 3.9 42 553-594 10-52 (54)
83 2lri_C Autoimmune regulator; Z 90.8 0.13 4.5E-06 40.5 2.7 47 334-383 11-60 (66)
84 1otr_A Protein CUE2; protein-p 89.6 0.24 8.2E-06 36.6 3.1 36 559-594 8-44 (49)
85 3m62_A Ubiquitin conjugation f 88.8 0.52 1.8E-05 55.0 6.7 48 335-386 891-939 (968)
86 1mm2_A MI2-beta; PHD, zinc fin 85.2 0.28 9.7E-06 37.8 1.3 48 333-383 7-57 (61)
87 2k16_A Transcription initiatio 84.6 0.12 4.2E-06 41.4 -1.1 52 334-385 17-71 (75)
88 1f62_A Transcription factor WS 82.9 0.42 1.4E-05 35.2 1.3 45 337-381 2-49 (51)
89 1wil_A KIAA1045 protein; ring 82.7 0.77 2.6E-05 37.6 2.9 32 333-365 13-47 (89)
90 2l5u_A Chromodomain-helicase-D 82.1 0.41 1.4E-05 36.9 1.0 45 334-381 10-57 (61)
91 3u5n_A E3 ubiquitin-protein li 81.6 0.32 1.1E-05 46.9 0.3 51 333-383 5-55 (207)
92 3o36_A Transcription intermedi 79.5 0.44 1.5E-05 44.9 0.5 47 334-383 3-52 (184)
93 1fp0_A KAP-1 corepressor; PHD 79.2 0.92 3.1E-05 37.7 2.3 48 333-383 23-73 (88)
94 2ro1_A Transcription intermedi 78.8 0.65 2.2E-05 44.1 1.5 48 335-382 2-49 (189)
95 2yql_A PHD finger protein 21A; 78.4 0.27 9.2E-06 37.2 -1.1 46 333-381 7-55 (56)
96 1we9_A PHD finger family prote 74.4 0.41 1.4E-05 37.0 -1.1 49 334-382 5-58 (64)
97 1wen_A Inhibitor of growth fam 73.5 2.1 7.1E-05 34.0 2.8 45 335-383 16-66 (71)
98 2cs3_A Protein C14ORF4, MY039 73.2 1.8 6.3E-05 35.0 2.4 46 334-379 14-64 (93)
99 2puy_A PHD finger protein 21A; 73.1 0.47 1.6E-05 36.3 -1.0 48 334-384 4-54 (60)
100 1xwh_A Autoimmune regulator; P 73.0 0.68 2.3E-05 36.2 -0.1 46 334-382 7-55 (66)
101 2ysm_A Myeloid/lymphoid or mix 72.6 0.95 3.3E-05 38.9 0.7 47 334-380 6-55 (111)
102 3lqh_A Histone-lysine N-methyl 72.6 1.6 5.6E-05 41.2 2.3 49 335-383 2-64 (183)
103 2e6r_A Jumonji/ARID domain-con 69.6 0.61 2.1E-05 39.1 -1.2 49 334-382 15-66 (92)
104 1weu_A Inhibitor of growth fam 68.2 3.5 0.00012 34.4 3.2 44 336-383 37-86 (91)
105 2vpb_A Hpygo1, pygopus homolog 66.0 1.7 5.8E-05 33.9 0.8 48 334-381 7-65 (65)
106 2e6s_A E3 ubiquitin-protein li 65.7 1.5 5.3E-05 35.4 0.5 46 336-381 27-76 (77)
107 3shb_A E3 ubiquitin-protein li 65.6 1.2 4.1E-05 36.0 -0.2 45 337-381 28-76 (77)
108 3v43_A Histone acetyltransfera 65.6 1.6 5.6E-05 37.6 0.7 45 337-381 63-111 (112)
109 3asl_A E3 ubiquitin-protein li 64.5 1.6 5.5E-05 34.5 0.4 45 337-381 20-68 (70)
110 1wev_A Riken cDNA 1110020M19; 63.1 0.96 3.3E-05 37.5 -1.2 53 334-386 15-76 (88)
111 3ask_A E3 ubiquitin-protein li 62.1 1.8 6E-05 42.3 0.2 46 336-381 175-224 (226)
112 2yt5_A Metal-response element- 61.9 0.9 3.1E-05 35.2 -1.5 51 334-384 5-63 (66)
113 3c6w_A P28ING5, inhibitor of g 61.0 1.6 5.5E-05 33.3 -0.2 43 335-381 9-57 (59)
114 2jmi_A Protein YNG1, ING1 homo 60.1 2.2 7.6E-05 35.5 0.5 44 334-381 25-75 (90)
115 2vnf_A ING 4, P29ING4, inhibit 58.5 1.8 6.2E-05 33.1 -0.3 43 335-381 10-58 (60)
116 1zbd_B Rabphilin-3A; G protein 58.1 6.5 0.00022 35.1 3.2 30 333-362 53-87 (134)
117 2xb1_A Pygopus homolog 2, B-ce 56.4 2.5 8.5E-05 36.2 0.2 49 336-384 4-63 (105)
118 2kgg_A Histone demethylase jar 56.0 1.6 5.5E-05 32.3 -1.0 44 337-380 4-52 (52)
119 1wep_A PHF8; structural genomi 55.8 7.5 0.00025 31.2 3.0 48 336-384 13-65 (79)
120 1weo_A Cellulose synthase, cat 55.1 15 0.00053 30.3 4.6 48 335-385 16-70 (93)
121 1joc_A EEA1, early endosomal a 54.7 14 0.00048 32.4 4.8 29 335-363 69-101 (125)
122 2lv9_A Histone-lysine N-methyl 54.3 3 0.0001 35.2 0.3 44 336-381 29-75 (98)
123 2lbm_A Transcriptional regulat 53.2 7.4 0.00025 35.1 2.8 49 333-381 61-116 (142)
124 1wee_A PHD finger family prote 51.4 2 6.8E-05 34.0 -1.2 46 336-382 17-66 (72)
125 4gne_A Histone-lysine N-methyl 50.4 8.1 0.00028 33.1 2.5 49 333-386 13-66 (107)
126 3o70_A PHD finger protein 13; 48.9 3.1 0.0001 32.7 -0.4 45 335-381 19-66 (68)
127 2ri7_A Nucleosome-remodeling f 47.1 3.8 0.00013 37.9 -0.2 48 334-382 7-59 (174)
128 2ysm_A Myeloid/lymphoid or mix 46.8 2.7 9.2E-05 36.0 -1.2 46 337-382 56-104 (111)
129 2gmg_A Hypothetical protein PF 46.4 11 0.00036 32.3 2.5 30 347-385 67-96 (105)
130 2kwj_A Zinc finger protein DPF 39.5 9.5 0.00033 32.8 1.2 42 336-380 2-59 (114)
131 3zyq_A Hepatocyte growth facto 38.4 28 0.00096 33.5 4.5 30 335-364 164-197 (226)
132 2l43_A N-teminal domain from h 37.4 7 0.00024 32.2 0.0 50 333-384 23-77 (88)
133 2kwj_A Zinc finger protein DPF 37.2 4.1 0.00014 35.2 -1.6 47 337-383 60-109 (114)
134 1wem_A Death associated transc 36.8 4.9 0.00017 32.0 -1.0 46 336-382 17-70 (76)
135 1vfy_A Phosphatidylinositol-3- 36.4 17 0.00057 28.7 2.1 29 335-363 11-43 (73)
136 1x62_A C-terminal LIM domain p 36.4 18 0.00062 28.4 2.4 38 335-384 15-52 (79)
137 2dar_A PDZ and LIM domain prot 36.4 17 0.00059 29.3 2.2 40 334-385 24-63 (90)
138 2g6q_A Inhibitor of growth pro 35.9 6.5 0.00022 30.2 -0.4 43 335-381 11-59 (62)
139 3v43_A Histone acetyltransfera 35.6 28 0.00095 29.7 3.6 43 335-380 5-62 (112)
140 2d8x_A Protein pinch; LIM doma 35.6 22 0.00075 27.0 2.7 40 335-386 5-44 (70)
141 3ql9_A Transcriptional regulat 35.5 21 0.00071 31.6 2.8 50 333-382 55-111 (129)
142 2d8z_A Four and A half LIM dom 35.4 22 0.00077 26.9 2.7 39 335-385 5-43 (70)
143 3i2d_A E3 SUMO-protein ligase 34.9 22 0.00075 37.0 3.3 51 335-386 249-301 (371)
144 2zet_C Melanophilin; complex, 34.6 83 0.0028 28.5 6.7 46 334-382 67-117 (153)
145 1y02_A CARP2, FYVE-ring finger 34.4 6.3 0.00022 34.5 -0.8 45 335-383 19-67 (120)
146 1x64_A Alpha-actinin-2 associa 34.2 28 0.00094 28.0 3.2 40 335-386 25-64 (89)
147 2cor_A Pinch protein; LIM doma 34.1 29 0.001 27.3 3.3 40 335-386 15-54 (79)
148 1wyh_A SLIM 2, skeletal muscle 33.7 26 0.0009 26.6 2.8 40 335-386 5-46 (72)
149 1wig_A KIAA1808 protein; LIM d 32.9 33 0.0011 26.5 3.4 39 335-385 5-43 (73)
150 2ku3_A Bromodomain-containing 32.6 11 0.00038 29.7 0.5 46 334-381 15-65 (71)
151 1nyp_A Pinch protein; LIM doma 32.5 23 0.00077 26.6 2.2 39 335-385 5-43 (66)
152 1dvp_A HRS, hepatocyte growth 32.3 17 0.00058 34.8 1.8 29 335-363 161-193 (220)
153 1z2q_A LM5-1; membrane protein 32.3 21 0.00072 28.9 2.1 30 335-364 21-54 (84)
154 3t7l_A Zinc finger FYVE domain 32.1 22 0.00076 29.2 2.3 31 335-365 20-54 (90)
155 1x6a_A LIMK-2, LIM domain kina 32.1 35 0.0012 26.7 3.4 39 335-385 15-53 (81)
156 2cu8_A Cysteine-rich protein 2 32.0 23 0.00078 27.5 2.2 39 335-385 9-48 (76)
157 3o7a_A PHD finger protein 13 v 31.9 6.6 0.00022 28.9 -1.0 41 340-381 8-51 (52)
158 4fo9_A E3 SUMO-protein ligase 31.3 27 0.00094 36.2 3.3 51 335-386 215-267 (360)
159 1x4l_A Skeletal muscle LIM-pro 30.5 31 0.0011 26.3 2.8 39 335-385 5-47 (72)
160 2yw8_A RUN and FYVE domain-con 30.5 23 0.00078 28.5 2.0 29 335-363 19-51 (82)
161 2cur_A Skeletal muscle LIM-pro 30.5 24 0.00082 26.7 2.1 39 335-385 5-43 (69)
162 1wfk_A Zinc finger, FYVE domai 30.1 20 0.0007 29.3 1.7 30 335-364 9-42 (88)
163 1zfo_A LAsp-1; LIM domain, zin 29.8 33 0.0011 22.3 2.3 27 336-362 4-31 (31)
164 2o35_A Hypothetical protein DU 29.6 19 0.00064 30.4 1.3 12 357-368 43-54 (105)
165 3fyb_A Protein of unknown func 29.5 19 0.00064 30.3 1.3 12 357-368 42-53 (104)
166 1x4u_A Zinc finger, FYVE domai 29.4 23 0.00078 28.6 1.9 29 335-363 14-46 (84)
167 2fiy_A Protein FDHE homolog; F 29.4 11 0.00039 38.3 0.0 45 334-382 181-231 (309)
168 2rsd_A E3 SUMO-protein ligase 29.3 6.5 0.00022 30.6 -1.4 44 337-381 12-64 (68)
169 1v6g_A Actin binding LIM prote 28.7 34 0.0012 26.8 2.8 40 335-386 15-54 (81)
170 2co8_A NEDD9 interacting prote 28.6 44 0.0015 26.4 3.5 41 334-386 14-55 (82)
171 1x68_A FHL5 protein; four-and- 27.2 29 0.00099 26.9 2.1 39 335-385 5-47 (76)
172 2d8v_A Zinc finger FYVE domain 26.8 26 0.00087 27.3 1.5 30 335-365 8-38 (67)
173 1wd2_A Ariadne-1 protein homol 26.2 17 0.00059 27.6 0.5 33 336-368 7-47 (60)
174 2dlo_A Thyroid receptor-intera 26.2 37 0.0013 26.6 2.6 40 334-385 14-53 (81)
175 2dae_A KIAA0733 protein; mitog 26.0 60 0.0021 25.6 3.5 26 556-581 11-36 (75)
176 3mpx_A FYVE, rhogef and PH dom 25.2 15 0.00052 38.6 0.0 49 335-383 375-430 (434)
177 1x4k_A Skeletal muscle LIM-pro 25.1 39 0.0013 25.6 2.4 40 335-386 5-46 (72)
178 2cuq_A Four and A half LIM dom 24.1 46 0.0016 25.9 2.7 39 335-385 15-53 (80)
179 1x63_A Skeletal muscle LIM-pro 24.0 49 0.0017 25.8 2.9 40 335-386 15-56 (82)
180 2jne_A Hypothetical protein YF 23.5 6.7 0.00023 33.0 -2.4 42 335-385 32-73 (101)
181 1x3h_A Leupaxin; paxillin fami 23.4 44 0.0015 25.9 2.5 40 335-386 15-54 (80)
182 1x61_A Thyroid receptor intera 23.0 49 0.0017 25.1 2.7 38 335-384 5-44 (72)
183 2l4z_A DNA endonuclease RBBP8, 22.8 33 0.0011 29.7 1.7 38 335-384 61-99 (123)
184 1iml_A CRIP, cysteine rich int 22.5 38 0.0013 26.1 1.9 37 337-385 2-39 (76)
185 2dj7_A Actin-binding LIM prote 22.3 44 0.0015 26.3 2.3 38 335-384 15-53 (80)
186 1x4i_A Inhibitor of growth pro 22.0 15 0.00052 28.8 -0.6 44 336-383 7-56 (70)
187 1g47_A Pinch protein; LIM doma 21.6 46 0.0016 25.6 2.2 41 334-386 10-52 (77)
188 2l3k_A Rhombotin-2, linker, LI 21.3 53 0.0018 28.1 2.8 38 336-385 9-48 (123)
189 2ku7_A MLL1 PHD3-CYP33 RRM chi 21.1 1.1E+02 0.0037 25.9 4.9 31 352-382 7-44 (140)
No 1
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.1e-17 Score=123.85 Aligned_cols=50 Identities=38% Similarity=0.601 Sum_probs=47.3
Q ss_pred cccccccchHHHHHHHHHHHhhCCCCChHHHHHHhhccCchhhhHHhhhc
Q 007666 544 TSRSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 593 (594)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~v~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~ 593 (594)
++|.++++++|+.+|+++|+|||||+|.+.|++||++||||++|++||||
T Consensus 2 ~~~~~~~~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~TgsVe~TienILe 51 (58)
T 2ejs_A 2 SSGSSGASNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 51 (58)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHCSHHHHHHHHHH
T ss_pred CCCcCCcchHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHh
Confidence 45678888999999999999999999999999999999999999999997
No 2
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.3e-17 Score=124.45 Aligned_cols=50 Identities=36% Similarity=0.602 Sum_probs=47.3
Q ss_pred cccccccchHHHHHHHHHHHhhCCCCChHHHHHHhhccCchhhhHHhhhc
Q 007666 544 TSRSANENIANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 593 (594)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~v~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~ 593 (594)
++|+++++++|+.+|+++|++||||||.+.|++||++||||++|++||||
T Consensus 2 ~~~~~~~~~~ql~~mv~~V~~mfP~vp~~~I~~DL~~TgsVe~TienILe 51 (61)
T 2ekf_A 2 SSGSSGSPDVQLATLAQRVKEVLPHVPLGVIQRDLAKTGCVDLTITNLLE 51 (61)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHCSSSCHHHHHHHHHTSCCHHHHHHHHHS
T ss_pred CCCCCCCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHc
Confidence 46677888899999999999999999999999999999999999999997
No 3
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=111.40 Aligned_cols=42 Identities=40% Similarity=0.660 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhhCCCCChHHHHHHhhccCchhhhHHhhhc
Q 007666 552 IANILAMAETVREVLPHMPEDLIFQDLQRTNSATITVNNLLQ 593 (594)
Q Consensus 552 ~~~~~~~~~~v~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~ 593 (594)
++|+.+|+++|++||||+|.+.|++||++||||++|++||||
T Consensus 14 ~sql~~Mve~V~~mFPqv~~~~I~~DL~rTgSVe~TienILe 55 (58)
T 4g3o_A 14 QGQLNAMAHQIQEMFPQVPYHLVLQDLQLTRSVEITTDNILE 55 (58)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCHHHHHHHHHc
Confidence 689999999999999999999999999999999999999997
No 4
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-12 Score=104.25 Aligned_cols=50 Identities=30% Similarity=0.700 Sum_probs=43.6
Q ss_pred cCCCcccccccccccc---cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~---~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
..+..|+||++++..+ +.+||||.||..|+.+|+++ +.+||+||+++...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSGPS 73 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCCCC
Confidence 3567899999999877 67899999999999999998 58999999988653
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.21 E-value=4.1e-12 Score=97.28 Aligned_cols=47 Identities=36% Similarity=0.838 Sum_probs=41.0
Q ss_pred CCCccccccccccc---ccccc-cCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 334 YDDECAICREPMAK---AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 334 ~~~~C~IC~e~~~~---~~~lp-CgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
.+.+|+||++++.+ +..++ |||.||..|+.+|+++ +.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEeE
Confidence 45689999999987 56677 9999999999999987 589999999874
No 6
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.19 E-value=9.2e-12 Score=99.94 Aligned_cols=50 Identities=32% Similarity=0.820 Sum_probs=42.9
Q ss_pred cCCCccccccccccc---ccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 333 AYDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~---~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+.+..|+||++.+.. ++.++|||.||..|+.+|+.+ +.+||+||..+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCccccCc
Confidence 356789999999854 467899999999999999998 57899999998764
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.18 E-value=5.7e-12 Score=107.20 Aligned_cols=48 Identities=35% Similarity=0.782 Sum_probs=42.3
Q ss_pred CCCccccccccccc---ccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAK---AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~---~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|+||++++.. ++.+||||.||..||..|++. +.+||+||+.+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccCCC
Confidence 45689999999987 567899999999999999987 5799999998864
No 8
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.18 E-value=1.5e-11 Score=101.19 Aligned_cols=50 Identities=46% Similarity=0.953 Sum_probs=43.4
Q ss_pred cCCCcccccccccccc---cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 333 AYDDECAICREPMAKA---KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~---~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
..+..|+||++.+.++ +.++|||.||..||..|+++ +.+||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccCCc
Confidence 4567899999999866 44699999999999999987 58999999998765
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=100.08 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=45.7
Q ss_pred CCCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCCCcc
Q 007666 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~~ 389 (594)
.+..|+||++.+.+++.+ +|||.||..||..|++. +..||+||+.+...++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~~~~ 66 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQTQPL 66 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCSSCSC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCccccc
Confidence 456899999999999887 99999999999999987 58999999999775433
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.17 E-value=9.9e-12 Score=95.05 Aligned_cols=47 Identities=36% Similarity=0.776 Sum_probs=41.2
Q ss_pred CCCccccccccccc----ccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 334 YDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 334 ~~~~C~IC~e~~~~----~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
.+..|+||++.+.+ ++.++|||.||..|+.+|+++ ..+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcCC
Confidence 35689999999965 567899999999999999998 589999999774
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.17 E-value=8.9e-12 Score=100.38 Aligned_cols=49 Identities=33% Similarity=0.665 Sum_probs=43.7
Q ss_pred CCCcccccccccccc-------cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.++ +.++|||.||..|+.+|+++ +.+||+||.++..+
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 64 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccChh
Confidence 456899999999887 77899999999999999998 58999999998754
No 12
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=100.14 Aligned_cols=49 Identities=35% Similarity=0.829 Sum_probs=42.8
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.++..+ +|||.||..|+.+|++. +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCcccccc
Confidence 467899999999877554 99999999999999998 57999999998754
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=8.7e-12 Score=99.66 Aligned_cols=49 Identities=33% Similarity=0.680 Sum_probs=43.1
Q ss_pred cCCCcccccccccccc-------cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~-------~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
..+..|+||++.+.++ +.++|||.||..|+..|+++ +..||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccCc
Confidence 3467899999999887 67899999999999999998 5899999998753
No 14
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.16 E-value=1.6e-11 Score=98.10 Aligned_cols=48 Identities=31% Similarity=0.766 Sum_probs=43.1
Q ss_pred CCCcccccccccccc-cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|+||++.+.++ +.++|||.||..|+..|+++ +.+||+||.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence 467899999999886 77899999999999999988 5899999998864
No 15
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=9.4e-12 Score=103.62 Aligned_cols=49 Identities=37% Similarity=0.777 Sum_probs=40.5
Q ss_pred CCCccccccccccc--------------ccccc-cCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAK--------------AKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~--------------~~~lp-CgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.++.|+||++++.+ ...++ |||.||..||.+|+++ +.+||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcchh
Confidence 46779999999865 33454 9999999999999998 57999999988653
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.7e-12 Score=101.99 Aligned_cols=49 Identities=27% Similarity=0.510 Sum_probs=44.6
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+++.++|||.||..|+..|+.+ ...||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL----GKRCALCRQEIPED 62 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC----SSBCSSSCCBCCHH
T ss_pred CCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC----CCcCcCcCchhCHh
Confidence 46789999999999999999999999999999987 58999999998753
No 17
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.14 E-value=1.9e-11 Score=111.95 Aligned_cols=48 Identities=33% Similarity=0.789 Sum_probs=43.7
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||++.+.+|+.+||||.||..|+..|+.. ..+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR----KIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc----CCcCCCCCCcCCCC
Confidence 4579999999999999999999999999999987 68999999998653
No 18
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.12 E-value=3.2e-11 Score=106.46 Aligned_cols=53 Identities=32% Similarity=0.659 Sum_probs=42.1
Q ss_pred CCCccccccccccccc------------------ccccCCccchhhHHHHHHcCC-CCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAK------------------KLLCNHLFHLACLRSWLDQGL-NEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~------------------~lpCgH~Fh~~Cl~~wl~~~~-~~~~~CP~CR~~~~~~ 386 (594)
.++.|+||++++.++. .++|||.||..||..|+.... ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997643 579999999999999996421 1257999999988654
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.12 E-value=1.8e-11 Score=96.39 Aligned_cols=48 Identities=33% Similarity=0.686 Sum_probs=42.9
Q ss_pred CCcccccccccccc-------cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~-------~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||++.+.++ ..++|||.||..|+.+|+++ +.+||+||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 57 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCTTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCCcc
Confidence 56899999999876 67899999999999999998 58999999998764
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.9e-11 Score=96.24 Aligned_cols=50 Identities=20% Similarity=0.533 Sum_probs=44.0
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+++.++|||.||..|+..|+++. ...||+||+++..+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS---SPKCTACQESIVKD 63 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS---SCCCTTTCCCCCTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC---cCCCCCCCcCCChh
Confidence 456899999999999999999999999999999642 57999999988754
No 21
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.1e-11 Score=97.05 Aligned_cols=53 Identities=23% Similarity=0.582 Sum_probs=44.9
Q ss_pred cCCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
..+..|+||++.+.+++.++|||.||..|+..|++... ....||+||+++..+
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcc
Confidence 34678999999999999999999999999999997321 157999999998754
No 22
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.08 E-value=6.7e-11 Score=96.51 Aligned_cols=50 Identities=26% Similarity=0.528 Sum_probs=43.4
Q ss_pred CCCcccccccccccccccc-cCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lp-CgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|+||++.+.+++.++ |||.||..||..|+++.. ...||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCC
Confidence 3568999999999999999 999999999999998731 3699999997654
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=4.4e-11 Score=99.18 Aligned_cols=47 Identities=23% Similarity=0.498 Sum_probs=43.4
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
.+..|+||++.+.+++.++|||.||..|+..|++. ...||+||.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA----TPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence 45689999999999999999999999999999987 589999999885
No 24
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.07 E-value=4.5e-11 Score=104.69 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=41.1
Q ss_pred CCCcccccccccccc------------------cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~------------------~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.++.|+||++.+.++ ..++|||.||..||.+|+.+ +.+||+||+++..
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 101 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBCCE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCccee
Confidence 467899999999754 23699999999999999988 6899999998643
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.06 E-value=6.3e-11 Score=97.37 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=44.7
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.|.+|+.++|||.||..||..|++++ ..+||.||.++...
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~---~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG---HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT---CCBCTTTCCBCSSC
T ss_pred ccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC---cCCCCCCcCCCChh
Confidence 456899999999999999999999999999999863 57999999988654
No 26
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=8e-11 Score=98.69 Aligned_cols=53 Identities=30% Similarity=0.558 Sum_probs=44.8
Q ss_pred cCCCccccccccccc----ccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 333 AYDDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~----~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
..+..|+||++.+.+ ++.++|||.||..|+..|++... ....||+||+.+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccch
Confidence 346789999999998 88899999999999999998731 137999999987654
No 27
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=3.2e-11 Score=97.01 Aligned_cols=48 Identities=33% Similarity=0.771 Sum_probs=43.3
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+ +.+||||.||..|+..|+.+ ...||+||+++...
T Consensus 14 ~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC----cCcCCCcCCcccCC
Confidence 45789999999998 88999999999999999986 68999999998764
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.01 E-value=7.9e-11 Score=101.89 Aligned_cols=49 Identities=35% Similarity=0.795 Sum_probs=43.8
Q ss_pred CCcccccccccccccc-cccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~-lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||++.+.+|+. ++|||.||..||..|+... ...||+||.++...
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQLR 71 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCCHH
Confidence 4589999999999999 9999999999999999983 26999999998654
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.01 E-value=1.8e-10 Score=103.39 Aligned_cols=49 Identities=27% Similarity=0.557 Sum_probs=43.7
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|+||++.+.+|+.++|||.||..||..|+..+ ...||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ---VFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC---cCCCCCCCccCCC
Confidence 356899999999999999999999999999999853 4599999998865
No 30
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2e-10 Score=90.49 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=39.6
Q ss_pred cCCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCc
Q 007666 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (594)
+.+..|+||++.+.+++.++|||.||..||..|++... ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 34678999999999999999999999999999998521 15689998
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.5e-10 Score=93.83 Aligned_cols=53 Identities=30% Similarity=0.535 Sum_probs=45.0
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcC--CCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQG--LNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~--~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+++.++|||.||..|+..|+.+. ......||.||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 467899999999999999999999999999999761 11147999999998764
No 32
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.98 E-value=1.1e-10 Score=95.88 Aligned_cols=53 Identities=25% Similarity=0.486 Sum_probs=45.0
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCC---CCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~---~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+++.++|||.||..|+..|++... .....||.||.++...
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 4668999999999999999999999999999997631 1247899999998764
No 33
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.98 E-value=1.9e-10 Score=97.57 Aligned_cols=49 Identities=27% Similarity=0.546 Sum_probs=43.0
Q ss_pred CCCcccccccccccccccc-cCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 334 YDDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lp-CgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
.+..|+||++.+.+|+.++ |||.||..||..|+.... ...||+||.++.
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence 4568999999999999999 999999999999997631 369999999874
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.97 E-value=3.3e-10 Score=93.95 Aligned_cols=53 Identities=30% Similarity=0.605 Sum_probs=45.3
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCC--CCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGL--NEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~--~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+++.++|||.||..|+..|+.... .....||.||..+...
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4668999999999999999999999999999998731 1247999999998764
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=2.6e-10 Score=90.39 Aligned_cols=49 Identities=24% Similarity=0.620 Sum_probs=41.7
Q ss_pred CCccccccc-cccccc----ccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICRE-PMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e-~~~~~~----~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||++ .+.++. .++|||.||..|+.+|+.++ ...||+||+++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccccc
Confidence 457999999 788874 47999999999999998764 57899999998764
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.95 E-value=2.6e-10 Score=99.83 Aligned_cols=49 Identities=22% Similarity=0.524 Sum_probs=44.6
Q ss_pred CCCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+++.+ +|||.||..|+..|+.. +..||.||..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET----SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh----CCcCcCCCcccccc
Confidence 466899999999999998 99999999999999987 58999999998764
No 37
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.95 E-value=1.9e-10 Score=99.08 Aligned_cols=48 Identities=29% Similarity=0.549 Sum_probs=43.5
Q ss_pred CCCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|+||++.+.+++.+ +|||.||..|+..|+.. +..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence 356899999999999888 89999999999999987 5899999998875
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3.2e-10 Score=87.40 Aligned_cols=45 Identities=27% Similarity=0.780 Sum_probs=38.7
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCc
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTC 379 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~C 379 (594)
.+..|+||++.+.+++.++|||.||..|+.+|+.+.. ....||+|
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred cCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 4678999999999999999999999999999976411 15799998
No 39
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.91 E-value=1.4e-10 Score=103.24 Aligned_cols=48 Identities=33% Similarity=0.731 Sum_probs=1.0
Q ss_pred CCCcccccccccccc------------------cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKA------------------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~------------------~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.++.|+||++++.++ ..++|+|.||..||.+|+.. +.+||+||+++..
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 112 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeeee
Confidence 467899999999753 12589999999999999998 6899999998653
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.91 E-value=8.4e-10 Score=96.77 Aligned_cols=51 Identities=27% Similarity=0.576 Sum_probs=43.9
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||++.+.+++.++|||.||..|+..|+..... ...||+||.++...
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHh
Confidence 3479999999999999999999999999999987321 35899999988764
No 41
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.88 E-value=1.5e-10 Score=102.43 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=43.1
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
+..|+||++.+.+|+.++|||.||..|+..|+..+ ...||.||..+..
T Consensus 15 ~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA---SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT---TSBCTTTCCBCHH
T ss_pred CCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC---cCCCCCCCcccCc
Confidence 45899999999999999999999999999999763 4799999999864
No 42
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.87 E-value=7.5e-10 Score=102.92 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=44.3
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+|+.++|||.||..||..|+... ...||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ---VFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT---CCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC---CCcCCCCCccCCCC
Confidence 346899999999999999999999999999999873 35899999998764
No 43
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.86 E-value=9.1e-10 Score=92.45 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=44.4
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.|.+|+.++|||+|++.||..|+.. +.+||.||.++...
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN----SPTDPFNRQMLTES 61 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhc----CCCCCCCcCCCChH
Confidence 45689999999999999999999999999999997 58999999988653
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.86 E-value=6.9e-10 Score=99.75 Aligned_cols=49 Identities=33% Similarity=0.665 Sum_probs=44.0
Q ss_pred CCCcccccccccccc-------cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~-------~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.++ +.++|||.||..||.+|+++ +.+||+||+.+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCccc
Confidence 356899999999988 78899999999999999988 57999999998765
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.84 E-value=6.5e-10 Score=98.47 Aligned_cols=50 Identities=32% Similarity=0.633 Sum_probs=44.6
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+|+.++|||.||..|+..|+... ...||+||.++...
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVM---GSYCPSCRYPCFPT 71 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCHh
Confidence 356899999999999999999999999999999874 46899999998764
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.84 E-value=3.2e-09 Score=107.38 Aligned_cols=50 Identities=16% Similarity=-0.031 Sum_probs=44.0
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.|.+|+.+||||+||+.||..|+..+ +.+||.||.++...
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQE 256 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCGG
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC---CCCCcCCCCCCchh
Confidence 456899999999999999999999999999999874 34699999988653
No 47
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.7e-09 Score=89.85 Aligned_cols=51 Identities=25% Similarity=0.624 Sum_probs=41.6
Q ss_pred CCCccccccccccc--ccccccC-----CccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAK--AKKLLCN-----HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~lpCg-----H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.++.|.||++++++ +..+||+ |.||..||..|+.... ..+||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFIME 71 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeeecC
Confidence 46789999998853 4567996 9999999999998731 25999999998764
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.84 E-value=9.4e-10 Score=103.57 Aligned_cols=48 Identities=33% Similarity=0.672 Sum_probs=42.9
Q ss_pred CCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
+..|+||++.+.+++.+ +|||.||..|+..|+..+ ...||+||.++..
T Consensus 54 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG---NKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred CCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence 45899999999999887 999999999999999864 5789999999854
No 49
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.82 E-value=1.3e-09 Score=94.47 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=44.3
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.|.+|+.++|||+||+.||..|+.. +.+||.||.++...
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN----SPTDPFNRQTLTES 76 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCTT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc----CCCCCCCCCCCChh
Confidence 35689999999999999999999999999999986 58999999988653
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=1.4e-09 Score=83.89 Aligned_cols=46 Identities=28% Similarity=0.554 Sum_probs=40.3
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+++.++|||.||..|+..| ...||+||+.+...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-------SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcCCCCcccHHHHccC-------CCCCCcCCcEeecC
Confidence 45689999999999999999999999999762 47899999988754
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.81 E-value=4.1e-09 Score=87.05 Aligned_cols=50 Identities=26% Similarity=0.507 Sum_probs=40.4
Q ss_pred CCCcccccccccc--cccccc--cCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMA--KAKKLL--CNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~--~~~~lp--CgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++++. ++..+| |||.||..|+..+++.. ...||.||+++...
T Consensus 10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~---~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE---NGLCPACRKPYPED 63 (78)
T ss_dssp CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS---CSBCTTTCCBCSSC
T ss_pred cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC---CCCCCCCCCccCCC
Confidence 4568999999985 345555 99999999999887553 57999999998765
No 52
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.80 E-value=1.2e-09 Score=97.29 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=44.0
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+|+.++|||.||..|+..|+... ...||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCHH
Confidence 456899999999999999999999999999999873 34999999988653
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.78 E-value=2.1e-09 Score=92.73 Aligned_cols=49 Identities=16% Similarity=0.038 Sum_probs=44.3
Q ss_pred CCCcccccccccccccccccC-CccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCg-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.|.+|+.++|| |.||+.||..|+.. +.+||.||.++...
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTMD 70 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCTT
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh----CCCCCCCCCCCChh
Confidence 356899999999999999999 99999999999987 57999999988653
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.77 E-value=1.9e-09 Score=96.89 Aligned_cols=50 Identities=32% Similarity=0.659 Sum_probs=44.1
Q ss_pred cCCCcccccccccccc-------cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 333 AYDDECAICREPMAKA-------KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~-------~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+.+..|+||++.+.++ +.++|||.||..|+.+|++. ..+||+||.++..+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCChh
Confidence 3567899999999876 67799999999999999998 68999999998764
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75 E-value=3.3e-09 Score=112.25 Aligned_cols=49 Identities=33% Similarity=0.611 Sum_probs=43.8
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||++.+.+++.+||||.||..|+..|+.+. ...||+||+++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~---~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE---GQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT---CSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC---CCCCCCCCCccCCc
Confidence 36899999999999999999999999999999842 58999999998764
No 56
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=5.3e-09 Score=85.36 Aligned_cols=54 Identities=19% Similarity=0.449 Sum_probs=43.2
Q ss_pred CCCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCCCcc
Q 007666 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~~ 389 (594)
..+.|+||.+.+...++- .|+|.||..||..|++... ..+||.||+++..+.++
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w~~~~~~ 68 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 68 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS--SCCCTTTCSCCCSCCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC--CCCCCCCcCcCCCCCCC
Confidence 456899999999765433 8999999999999998732 27999999998765433
No 57
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.73 E-value=3.5e-09 Score=83.73 Aligned_cols=49 Identities=22% Similarity=0.507 Sum_probs=42.5
Q ss_pred cCCCccccccccccccccc--ccCCc-cchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 333 AYDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l--pCgH~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
+.+..|.||++...++..+ ||||. ||..|...|.++ +..||+||+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhhc
Confidence 3466899999999888777 99998 999999999877 5799999998854
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.72 E-value=4e-09 Score=83.70 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=42.2
Q ss_pred CCCccccccccccccccc--ccCCc-cchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKL--LCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l--pCgH~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|.||++...++..+ ||||. ||..|+..|.++ +..||+||+++..
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchhc
Confidence 356899999999998876 99999 899999999987 5799999998854
No 59
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.71 E-value=1.9e-09 Score=99.10 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=43.9
Q ss_pred cCCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
+.+..|+||++.+.+|+.++|||.||..||..|+..+ ...||+||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG---PQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS---CEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC---CCCCCCCCCcccc
Confidence 3456899999999999999999999999999999863 3589999998754
No 60
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=4.7e-09 Score=93.15 Aligned_cols=46 Identities=24% Similarity=0.648 Sum_probs=41.2
Q ss_pred CCCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|+||++.+.+|+.+ +|||.||..||..|+. ..||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCcc
Confidence 356899999999999999 9999999999999986 579999998854
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.63 E-value=1.2e-08 Score=97.30 Aligned_cols=49 Identities=16% Similarity=-0.016 Sum_probs=43.4
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||.+.|.+|+.+||||+||+.||..|+... +.+||.||.++...
T Consensus 106 ~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 106 YLCGKISFELMREPCITPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQD 154 (179)
T ss_dssp GGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGG
T ss_pred hhcccCccccCCCCeECCCCCEECHHHHHHHHHhC---CCCCCCCcCCCChh
Confidence 45899999999999999999999999999999873 24799999988653
No 62
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.59 E-value=7.3e-09 Score=84.47 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=39.2
Q ss_pred CCCcccccccccccccccccCCc-cchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||+++..
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 34689999999999999999999 999999876 589999998864
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=86.48 Aligned_cols=51 Identities=22% Similarity=0.442 Sum_probs=42.1
Q ss_pred CCcccccccccccccccc-cCCccchhhHHHHHHcC--CCCCCCCcC--cccC-CcC
Q 007666 335 DDECAICREPMAKAKKLL-CNHLFHLACLRSWLDQG--LNEMYSCPT--CRKP-LFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lp-CgH~Fh~~Cl~~wl~~~--~~~~~~CP~--CR~~-~~~ 385 (594)
+..|+||++.|.+|+.++ |||+||+.||..|+... .....+||. |+.. +..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 468999999999999996 99999999999999862 111369999 9876 543
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=3.5e-08 Score=80.54 Aligned_cols=44 Identities=23% Similarity=0.533 Sum_probs=38.5
Q ss_pred CCcccccccccccccccccCCc-cchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||++.+.+++.+||||. ||..|+.. ...||+||.++...
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA--------VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH--------CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC--------CCCCccCCceecCc
Confidence 4579999999999999999999 99999953 47899999988653
No 65
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.49 E-value=3.2e-08 Score=93.39 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=44.0
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|+||++.+.+|+.++|||.||..|+..|+..+ ...||+||.++...
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~~ 66 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA---GHKCPVDNEILLEN 66 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCGG
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC---CCCCCCCccCcchh
Confidence 356899999999999999999999999999999873 35999999988653
No 66
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=7.8e-08 Score=77.17 Aligned_cols=46 Identities=22% Similarity=0.594 Sum_probs=40.1
Q ss_pred cCCCcccccccccccccccccCCc-cchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 333 AYDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpCgH~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+.+..|.||++...+++.+||||. ||..|+.. ...||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY--------FQQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH--------CSSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc--------CCCCCCCCcchhce
Confidence 456789999999999999999999 99999972 47999999998764
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.37 E-value=1.2e-07 Score=97.87 Aligned_cols=53 Identities=23% Similarity=0.528 Sum_probs=39.8
Q ss_pred CCCccccccccccccc--------ccccCCccchhhHHHHHHcCCC-------CCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAK--------KLLCNHLFHLACLRSWLDQGLN-------EMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~--------~lpCgH~Fh~~Cl~~wl~~~~~-------~~~~CP~CR~~~~~~ 386 (594)
...+|+||++.+.+.. -.+|||.||..||.+|++.... -..+||.||+++..+
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 4568999999887621 2479999999999999976211 014799999988653
No 68
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.27 E-value=1.5e-07 Score=77.83 Aligned_cols=44 Identities=25% Similarity=0.470 Sum_probs=38.6
Q ss_pred CCcccccccccccccccccCCc-cchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+||++...+++.+||||. ||..|+..| ..||+||.++...
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCEE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhCe
Confidence 4579999999999999999999 999998653 4899999998764
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.27 E-value=3.2e-07 Score=91.76 Aligned_cols=51 Identities=22% Similarity=0.477 Sum_probs=43.2
Q ss_pred CCCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcC--cccCCcCC
Q 007666 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPT--CRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~--CR~~~~~~ 386 (594)
.+..|+||++.|.+|++. .|||.||+.||..|++... ...||+ ||+.+...
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECGG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCchh
Confidence 346799999999999985 9999999999999997631 368999 99987654
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.26 E-value=2.8e-07 Score=72.33 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=43.4
Q ss_pred Cccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCCC
Q 007666 336 DECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGR 387 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~ 387 (594)
..|+||.+.|++|+.+ +|||+|.+.||.+|+++ +.+||+++.++...+
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~~~~ 52 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD----TGNDPITNEPLSIEE 52 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCCGGG
T ss_pred EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCChhh
Confidence 4799999999999999 89999999999999987 467999999987653
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.22 E-value=6.3e-07 Score=70.07 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=39.7
Q ss_pred CCCcccccccccccccccccC--C---ccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKLLCN--H---LFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCg--H---~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|.||+++..++..+||. | .||..|+..|+.... +.+||+||.++..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeeec
Confidence 456899999987666667865 4 999999999997532 4799999997653
No 72
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.14 E-value=4.4e-07 Score=95.17 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=39.6
Q ss_pred CCCcccccccccccccccccCCc-cchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKLLCNHL-FHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~-Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 46789999999999999999999 999999866 589999998864
No 73
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.03 E-value=1.9e-06 Score=73.19 Aligned_cols=51 Identities=25% Similarity=0.611 Sum_probs=39.4
Q ss_pred CCccccccccccccccc---ccCCccchhhHHHHHHcC----CCCCCCCcC--cccC--CcC
Q 007666 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQG----LNEMYSCPT--CRKP--LFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~----~~~~~~CP~--CR~~--~~~ 385 (594)
..+|+||++++..+..+ +|||.||..|+..+++.. ......||. |+.. +..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 45799999999877543 799999999999998642 111358999 9998 544
No 74
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.73 E-value=1.3e-05 Score=68.13 Aligned_cols=47 Identities=26% Similarity=0.590 Sum_probs=39.6
Q ss_pred ccccccccccc-ccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 337 ECAICREPMAK-AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 337 ~C~IC~e~~~~-~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
.|.+|--++.. ++.+||+|+||.+|...|.+++ .++||.|+.++..-
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeeee
Confidence 48888888765 5677999999999999998764 58999999998653
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.27 E-value=0.00014 Score=72.31 Aligned_cols=53 Identities=19% Similarity=0.471 Sum_probs=41.9
Q ss_pred CCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCCCcc
Q 007666 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVGRRE 389 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~~~~ 389 (594)
-..|.||.+....+++= .|+|.||..|+..|++... ...||.|+.+++...|.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~~~~~ 233 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPHEIPK 233 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCSCCCC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCCCCCC
Confidence 35799999998766544 4999999999999997632 36999999998776443
No 76
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.77 E-value=0.00086 Score=53.25 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHhhccC-chhhhHHhhhcC
Q 007666 555 ILAMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQM 594 (594)
Q Consensus 555 ~~~~~~~v~~~~p~~p~~~~~~~~~~~~-~~~~~~~~~~~~ 594 (594)
....++++++|||++-.++|..+|.+.+ +||.||+.||+|
T Consensus 18 ~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 18 FNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 3456789999999999999999998776 899999999975
No 77
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.41 E-value=0.0046 Score=49.37 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHhhCCCCChHHHHHHhhcc-CchhhhHHhhhc
Q 007666 552 IANILAMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQ 593 (594)
Q Consensus 552 ~~~~~~~~~~v~~~~p~~p~~~~~~~~~~~-~~~~~~~~~~~~ 593 (594)
...+.++++||||+|||.-..-|.+=|..- ++|+.+|++|||
T Consensus 10 ~~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 10 GVELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SHHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 388999999999999999999999988876 599999999998
No 78
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=95.95 E-value=0.0094 Score=43.47 Aligned_cols=38 Identities=34% Similarity=0.512 Sum_probs=34.2
Q ss_pred HHHHHHHhhCCCCChHHHHHHhhccC-chhhhHHhhhcC
Q 007666 557 AMAETVREVLPHMPEDLIFQDLQRTN-SATITVNNLLQM 594 (594)
Q Consensus 557 ~~~~~v~~~~p~~p~~~~~~~~~~~~-~~~~~~~~~~~~ 594 (594)
.+.+|++.|||.-|-++|++.|+||| .|...|||||-|
T Consensus 11 ~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsR 49 (53)
T 2qho_B 11 ELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSR 49 (53)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhcc
Confidence 46789999999999999999999998 799999999965
No 79
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=93.19 E-value=0.1 Score=40.27 Aligned_cols=38 Identities=24% Similarity=0.473 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCCChHHHHHHhhcc-CchhhhHHhhhcC
Q 007666 557 AMAETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQM 594 (594)
Q Consensus 557 ~~~~~v~~~~p~~p~~~~~~~~~~~-~~~~~~~~~~~~~ 594 (594)
...++.+||||++..++|.+=|... +.||.||+.||+|
T Consensus 11 e~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 11 EDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4568899999999999999988554 5799999999986
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.69 E-value=0.073 Score=45.00 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.2
Q ss_pred CCcccccccc-cccccc--cccCCccchhhHHHH
Q 007666 335 DDECAICREP-MAKAKK--LLCNHLFHLACLRSW 365 (594)
Q Consensus 335 ~~~C~IC~e~-~~~~~~--lpCgH~Fh~~Cl~~w 365 (594)
+..|.||.++ +.++++ ++|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 4579999986 567777 899999999999873
No 81
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.61 E-value=0.062 Score=44.96 Aligned_cols=45 Identities=31% Similarity=0.602 Sum_probs=36.7
Q ss_pred CcccccccccccccccccC-CccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 336 DECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~lpCg-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
..|..|+-..+ -.+.|. |..|..|+...|.. +..||+|+.+++.+
T Consensus 29 ~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~----SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK--GLVECNNHYLCLNCLTLLLSV----SNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSS----SSEETTTTEECCCC
T ss_pred ccChhhccccC--CeeeecchhhHHHHHHHHHhh----ccCCcccCCcCCcc
Confidence 56999997644 234565 99999999998887 68999999999876
No 82
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=91.35 E-value=0.19 Score=37.88 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhCCCCChHHHHHHhh-ccCchhhhHHhhhcC
Q 007666 553 ANILAMAETVREVLPHMPEDLIFQDLQ-RTNSATITVNNLLQM 594 (594)
Q Consensus 553 ~~~~~~~~~v~~~~p~~p~~~~~~~~~-~~~~~~~~~~~~~~~ 594 (594)
.+.....+++++|||++-.++|..=|. +-|.++.||+.+|+|
T Consensus 10 ~e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 10 NERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 456678899999999999888765443 346799999999986
No 83
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.79 E-value=0.13 Score=40.50 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=34.9
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
.+..|.||.+. ...+ .|...||..|++..+.......=.||.|+...
T Consensus 11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 45679999864 2333 68899999999988876544456999997643
No 84
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=89.62 E-value=0.24 Score=36.65 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=31.1
Q ss_pred HHHHHhhCCCCChHHHHHHhhcc-CchhhhHHhhhcC
Q 007666 559 AETVREVLPHMPEDLIFQDLQRT-NSATITVNNLLQM 594 (594)
Q Consensus 559 ~~~v~~~~p~~p~~~~~~~~~~~-~~~~~~~~~~~~~ 594 (594)
+++..||||++....|..=|... |.+|.+++.||+|
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 46778999999999999988764 6899999999975
No 85
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=88.76 E-value=0.52 Score=54.98 Aligned_cols=48 Identities=15% Similarity=0.037 Sum_probs=42.8
Q ss_pred CCcccccccccccccccccC-CccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCN-HLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCg-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
+..|+|-.+-|.+|+.+|.| +.|-+.+|..|+.+ +.+||.=|.++...
T Consensus 891 ~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~ 939 (968)
T 3m62_A 891 EFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLE 939 (968)
T ss_dssp GGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGG
T ss_pred HhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcc
Confidence 35699999999999999998 68999999999987 57999999988754
No 86
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=85.16 E-value=0.28 Score=37.80 Aligned_cols=48 Identities=27% Similarity=0.639 Sum_probs=33.2
Q ss_pred cCCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
..+..|.+|.+. ...+ .|...||..|+.+-+.+.....-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 356789999864 2233 68899999999865544333345899997654
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=84.58 E-value=0.12 Score=41.41 Aligned_cols=52 Identities=17% Similarity=0.404 Sum_probs=34.1
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.+..|.+|.........+ .|.-.||..|+..-........-.||.|+..+..
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 345699998775432233 6889999999965433222235689999876543
No 88
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=82.86 E-value=0.42 Score=35.24 Aligned_cols=45 Identities=36% Similarity=0.805 Sum_probs=30.7
Q ss_pred ccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 337 ~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
.|.||.+.-+....+ .|...||..|+.+=+.+.+...-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588998764333333 688999999997655443333457999975
No 89
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=82.67 E-value=0.77 Score=37.64 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=23.7
Q ss_pred cCCCcccccccccccccccc---cCCccchhhHHHH
Q 007666 333 AYDDECAICREPMAKAKKLL---CNHLFHLACLRSW 365 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lp---CgH~Fh~~Cl~~w 365 (594)
..|+.|.||-.- ....++| |+-+||..|+++-
T Consensus 13 ~~D~~C~VC~~~-t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVW-TAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCC-CSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccc-cccceeccccccccccHhhcccc
Confidence 468899999732 2334454 7899999999875
No 90
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.14 E-value=0.41 Score=36.90 Aligned_cols=45 Identities=27% Similarity=0.800 Sum_probs=32.5
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
.+..|.+|.+. ...+ .|...||..|+..-+.+.+...-.||.|+.
T Consensus 10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 46789999974 2333 688899999998755443334568999975
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=81.61 E-value=0.32 Score=46.86 Aligned_cols=51 Identities=25% Similarity=0.393 Sum_probs=34.7
Q ss_pred cCCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
..++.|.+|.+.=+--..-.|...||..|+.+-+...+.+.-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 356789999865221111158899999999876655433356899998754
No 92
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=79.52 E-value=0.44 Score=44.91 Aligned_cols=47 Identities=30% Similarity=0.620 Sum_probs=33.9
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
.++.|.+|.+. +..+ .|...||..|+.+-+...+.+.-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999865 3333 58899999999876655333356899998754
No 93
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.16 E-value=0.92 Score=37.73 Aligned_cols=48 Identities=27% Similarity=0.600 Sum_probs=34.6
Q ss_pred cCCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
..++.|.+|.+. ...+ .|.-.||..|+.+=+.+.+...-.||.|+..-
T Consensus 23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 457789999976 2333 57788999999876655433355899998643
No 94
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=78.84 E-value=0.65 Score=44.09 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=32.7
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (594)
++.|.+|.+.-+.-..-.|...||..|+.+=+.....+.-.||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 568999997632212226789999999976554433334589999865
No 95
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.41 E-value=0.27 Score=37.19 Aligned_cols=46 Identities=33% Similarity=0.832 Sum_probs=31.9
Q ss_pred cCCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 333 AYDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
..++.|.+|.+. ...+ .|...||..|+.+-+...+...-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 356789999975 2333 688999999998655443333457998864
No 96
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=74.44 E-value=0.41 Score=37.02 Aligned_cols=49 Identities=27% Similarity=0.647 Sum_probs=32.1
Q ss_pred CCCccccccccccccc-cc---ccCCccchhhHHHHHHc-CCCCCCCCcCcccC
Q 007666 334 YDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQ-GLNEMYSCPTCRKP 382 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~l---pCgH~Fh~~Cl~~wl~~-~~~~~~~CP~CR~~ 382 (594)
.+..|++|..+..+.. .+ .|...||..|+.--... .......||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 4567999998875332 22 68899999998532111 01236799999763
No 97
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=73.52 E-value=2.1 Score=34.02 Aligned_cols=45 Identities=24% Similarity=0.669 Sum_probs=29.8
Q ss_pred CCccccccccccccccc---c--cC-CccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---p--Cg-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
...| ||..... ...+ . |. ..||..|+. +.......-.||.|+..-
T Consensus 16 ~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 16 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 4457 8988643 3333 3 66 699999997 444333467999997744
No 98
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=73.24 E-value=1.8 Score=35.04 Aligned_cols=46 Identities=24% Similarity=0.509 Sum_probs=35.1
Q ss_pred CCCccccccccccccccccc----CCccchhhHHHHHHcC-CCCCCCCcCc
Q 007666 334 YDDECAICREPMAKAKKLLC----NHLFHLACLRSWLDQG-LNEMYSCPTC 379 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpC----gH~Fh~~Cl~~wl~~~-~~~~~~CP~C 379 (594)
....|.+|.|.+++.....| .|.||..|-+.-++++ ......||.=
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred CeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 34579999999999888877 5999999999888753 2223466654
No 99
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=73.06 E-value=0.47 Score=36.31 Aligned_cols=48 Identities=31% Similarity=0.825 Sum_probs=33.3
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
.++.|.+|.+. ...+ .|...||..|+.+-+...+...-.||.|+....
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~ 54 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML 54 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhh
Confidence 46789999975 2333 688999999998655443333458999976443
No 100
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.96 E-value=0.68 Score=36.17 Aligned_cols=46 Identities=35% Similarity=0.786 Sum_probs=32.3
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccC
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (594)
.++.|.||.+. ...+ .|...||..|+.+-+...+...-.||.|...
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 56789999975 2233 6888999999986554433334589999763
No 101
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=72.63 E-value=0.95 Score=38.93 Aligned_cols=47 Identities=23% Similarity=0.616 Sum_probs=31.2
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcc
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (594)
.++.|.+|.+.-+....+ .|+..||..|+......-....-.||.|+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 577899998874432223 78899999999866532111245777775
No 102
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=72.56 E-value=1.6 Score=41.19 Aligned_cols=49 Identities=18% Similarity=0.493 Sum_probs=32.1
Q ss_pred CCccccccccccccc----cc---ccCCccchhhHHH------HHHc-CCCCCCCCcCcccCC
Q 007666 335 DDECAICREPMAKAK----KL---LCNHLFHLACLRS------WLDQ-GLNEMYSCPTCRKPL 383 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~----~l---pCgH~Fh~~Cl~~------wl~~-~~~~~~~CP~CR~~~ 383 (594)
+..|+||...+.+.. .+ .|...||..|..- -+.. +......||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 457999999887653 22 6889999999742 1110 000147999998754
No 103
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.58 E-value=0.61 Score=39.06 Aligned_cols=49 Identities=24% Similarity=0.522 Sum_probs=33.3
Q ss_pred CCCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccC
Q 007666 334 YDDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (594)
.+..|.||.+.-.....+ .|...||..|+.+=+..-+...=.||.|+..
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 456799999875433333 6889999999975444433334579999763
No 104
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.18 E-value=3.5 Score=34.42 Aligned_cols=44 Identities=25% Similarity=0.689 Sum_probs=29.2
Q ss_pred Cccccccccccccccc---c--cC-CccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 336 DECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~l---p--Cg-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
..| ||.+... ...+ . |. ..||..|+. +.......-.||.|+..-
T Consensus 37 ~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 37 TYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp BCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 456 9998643 3333 3 65 689999997 444333467999997743
No 105
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=65.95 E-value=1.7 Score=33.94 Aligned_cols=48 Identities=23% Similarity=0.551 Sum_probs=30.1
Q ss_pred CCCccccccccccccccc-----ccCCccchhhHHH------HHHcCCCCCCCCcCccc
Q 007666 334 YDDECAICREPMAKAKKL-----LCNHLFHLACLRS------WLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-----pCgH~Fh~~Cl~~------wl~~~~~~~~~CP~CR~ 381 (594)
....|.+|..++.+.... .|.-.||..|+.- -+.+.+...-.||.|++
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~~ 65 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMA 65 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHHC
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCccC
Confidence 356799999987654332 6889999999841 12211222467998863
No 106
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.71 E-value=1.5 Score=35.37 Aligned_cols=46 Identities=30% Similarity=0.726 Sum_probs=31.0
Q ss_pred Cccccccccccccccc---ccCCccchhhHHHHHHcCCCC-CCCCcCccc
Q 007666 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 381 (594)
..|.+|...-.....+ .|...||..|+.+-+.+.+.. .=.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3688888653333444 688999999998655543332 358999975
No 107
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=65.61 E-value=1.2 Score=36.03 Aligned_cols=45 Identities=33% Similarity=0.742 Sum_probs=29.3
Q ss_pred ccccccccccccccc---ccCCccchhhHHHHHHcCCCCC-CCCcCccc
Q 007666 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEM-YSCPTCRK 381 (594)
Q Consensus 337 ~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~-~~CP~CR~ 381 (594)
.|.+|.+.-.....+ .|...||..|+.+-|...+... =.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 455666554333444 5788999999987666543333 58999975
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=65.56 E-value=1.6 Score=37.64 Aligned_cols=45 Identities=29% Similarity=0.672 Sum_probs=30.8
Q ss_pred ccccccccccc-cccc---ccCCccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 337 ECAICREPMAK-AKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 337 ~C~IC~e~~~~-~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
.|.+|.+.-.+ ...+ .|...||..|+.+-+...+...-.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 58888865322 2333 588999999998666554333458999975
No 109
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=64.48 E-value=1.6 Score=34.51 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=29.6
Q ss_pred ccccccccccccccc---ccCCccchhhHHHHHHcCCCC-CCCCcCccc
Q 007666 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (594)
Q Consensus 337 ~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 381 (594)
.|.+|...-.....+ .|...||..|+.+-+.+.+.+ .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 466777543333444 588999999998655543333 458999975
No 110
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=63.12 E-value=0.96 Score=37.50 Aligned_cols=53 Identities=17% Similarity=0.514 Sum_probs=35.7
Q ss_pred CCCccccccccccc--cccc---ccCCccchhhHHHHHHc----CCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ----GLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~l---pCgH~Fh~~Cl~~wl~~----~~~~~~~CP~CR~~~~~~ 386 (594)
.+..|.+|.+.-.. ...+ .|...||..|+.+-+.. .....=.||.|+......
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 46789999986432 2333 68899999999876542 222245899998765443
No 111
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=62.05 E-value=1.8 Score=42.28 Aligned_cols=46 Identities=33% Similarity=0.710 Sum_probs=27.3
Q ss_pred Cccccccccccccccc---ccCCccchhhHHHHHHcCCCC-CCCCcCccc
Q 007666 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNE-MYSCPTCRK 381 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~-~~~CP~CR~ 381 (594)
..|.+|...-.....+ .|...||..|+.+-+...+.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3577887643333333 688999999998766543332 347999975
No 112
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=61.85 E-value=0.9 Score=35.24 Aligned_cols=51 Identities=22% Similarity=0.537 Sum_probs=33.8
Q ss_pred CCCccccccccccc--cccc---ccCCccchhhHHHHHHc---CCCCCCCCcCcccCCc
Q 007666 334 YDDECAICREPMAK--AKKL---LCNHLFHLACLRSWLDQ---GLNEMYSCPTCRKPLF 384 (594)
Q Consensus 334 ~~~~C~IC~e~~~~--~~~l---pCgH~Fh~~Cl~~wl~~---~~~~~~~CP~CR~~~~ 384 (594)
.+..|.+|.....+ ...+ .|.-.||..|+..-+.. .....-.||.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 46789999986432 3333 68899999999864322 0122468999976543
No 113
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=61.03 E-value=1.6 Score=33.32 Aligned_cols=43 Identities=26% Similarity=0.702 Sum_probs=28.2
Q ss_pred CCccccccccccccccc---c--cC-CccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---p--Cg-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
+.-| ||.+... +..+ . |. ..||..|+. +...+...-.||.|+.
T Consensus 9 ~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 9 PTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 3456 8988643 3333 3 66 699999997 4443334578999975
No 114
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=60.07 E-value=2.2 Score=35.53 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=27.5
Q ss_pred CCCccccccccccccccc---c--cC-CccchhhHHHHHHcCCCCCCCCcC-ccc
Q 007666 334 YDDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPT-CRK 381 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l---p--Cg-H~Fh~~Cl~~wl~~~~~~~~~CP~-CR~ 381 (594)
....| ||...... ..+ . |. ..||..|+. |.......-.||. |+.
T Consensus 25 ~~~yC-iC~~~~~g-~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 25 EEVYC-FCRNVSYG-PMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CSCCS-TTTCCCSS-SEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCcEE-EeCCCCCC-CEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 34567 99975332 222 3 44 689999996 3333333579999 974
No 115
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=58.48 E-value=1.8 Score=33.11 Aligned_cols=43 Identities=26% Similarity=0.720 Sum_probs=28.2
Q ss_pred CCccccccccccccccc---c--cC-CccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---p--Cg-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
...| ||...-. +..+ . |. ..||..|+. +...+...-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 3456 8988643 3333 3 55 689999997 4443334578999965
No 116
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=58.09 E-value=6.5 Score=35.12 Aligned_cols=30 Identities=17% Similarity=0.319 Sum_probs=20.5
Q ss_pred cCCCccccccccccc--c---cccccCCccchhhH
Q 007666 333 AYDDECAICREPMAK--A---KKLLCNHLFHLACL 362 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~--~---~~lpCgH~Fh~~Cl 362 (594)
..+..|.+|..++.- . ....|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 356789999999841 1 23467777777774
No 117
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=56.44 E-value=2.5 Score=36.18 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=31.6
Q ss_pred Ccccccccccccccc-c----ccCCccchhhHHHH------HHcCCCCCCCCcCcccCCc
Q 007666 336 DECAICREPMAKAKK-L----LCNHLFHLACLRSW------LDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~-l----pCgH~Fh~~Cl~~w------l~~~~~~~~~CP~CR~~~~ 384 (594)
..|.||..++.+... + .|...||..|+.-= +.........||.|+..-.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 469999998754322 2 57899999998411 1111122579999987543
No 118
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=56.01 E-value=1.6 Score=32.31 Aligned_cols=44 Identities=25% Similarity=0.544 Sum_probs=26.9
Q ss_pred ccccccccccccccc-----ccCCccchhhHHHHHHcCCCCCCCCcCcc
Q 007666 337 ECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQGLNEMYSCPTCR 380 (594)
Q Consensus 337 ~C~IC~e~~~~~~~l-----pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR 380 (594)
.|.+|..+..+.... .|...||..|+.--.....+....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 477898887544222 57789999997521111001258999996
No 119
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.75 E-value=7.5 Score=31.19 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=30.1
Q ss_pred Ccccccccccccc-ccc---ccCCccchhhHHHHHHc-CCCCCCCCcCcccCCc
Q 007666 336 DECAICREPMAKA-KKL---LCNHLFHLACLRSWLDQ-GLNEMYSCPTCRKPLF 384 (594)
Q Consensus 336 ~~C~IC~e~~~~~-~~l---pCgH~Fh~~Cl~~wl~~-~~~~~~~CP~CR~~~~ 384 (594)
..| ||..+.++. ..+ .|...||..|+.---.. .......||.|+..-.
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 356 898876422 222 58899999998522111 1123689999987643
No 120
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=55.09 E-value=15 Score=30.31 Aligned_cols=48 Identities=19% Similarity=0.424 Sum_probs=34.9
Q ss_pred CCccccccccccc---ccc----cccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAK---AKK----LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~---~~~----lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|.||-++... +.. -.|+--.|+.|..-=.+.+ .+.||.|+.....
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG---~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG---TQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS---CSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc---CccccccCCcccc
Confidence 4689999999642 211 2688788999987554444 6899999998754
No 121
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=54.71 E-value=14 Score=32.39 Aligned_cols=29 Identities=17% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCccccccccccccc----ccccCCccchhhHH
Q 007666 335 DDECAICREPMAKAK----KLLCNHLFHLACLR 363 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~----~lpCgH~Fh~~Cl~ 363 (594)
...|.+|...|..-. .-.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 357999999997542 23899999999964
No 122
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=54.27 E-value=3 Score=35.18 Aligned_cols=44 Identities=20% Similarity=0.560 Sum_probs=29.9
Q ss_pred Cccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
..| ||.........+ .|.-.||..|+..=... .++.-.||.|+.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~-~p~~w~C~~C~~ 75 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQH-IPDTYLCERCQP 75 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTS-CCSSBCCTTTSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccC-CCCCEECCCCcC
Confidence 357 888776555444 68899999998643222 234579999974
No 123
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=53.23 E-value=7.4 Score=35.13 Aligned_cols=49 Identities=22% Similarity=0.473 Sum_probs=33.0
Q ss_pred cCCCcccccccccccccccccCCccchhhHHHHHHc-------CCCCCCCCcCccc
Q 007666 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQ-------GLNEMYSCPTCRK 381 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~-------~~~~~~~CP~CR~ 381 (594)
..++.|.+|.+.=+---.-.|-..||..||.+-+.. ...+.=.||.|+.
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 457889999986322111278899999999865521 1222458999975
No 124
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=51.43 E-value=2 Score=34.02 Aligned_cols=46 Identities=20% Similarity=0.405 Sum_probs=30.0
Q ss_pred Cccccccccccccc-cc---ccCCccchhhHHHHHHcCCCCCCCCcCcccC
Q 007666 336 DECAICREPMAKAK-KL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (594)
Q Consensus 336 ~~C~IC~e~~~~~~-~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (594)
..| ||.....+.. .+ .|...||..|+.---....+....||.|+..
T Consensus 17 ~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 458 7988765442 22 6889999999853211123346799999763
No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=50.41 E-value=8.1 Score=33.13 Aligned_cols=49 Identities=24% Similarity=0.473 Sum_probs=32.8
Q ss_pred cCCCccccccccccccccc-----ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 333 AYDDECAICREPMAKAKKL-----LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~l-----pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
..++.|.+|.+. +..+ .|-..||..|+. +.+.+...-.||.|+..+-.+
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~k 66 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECSS 66 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTCS
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCCC
Confidence 356789999853 2233 477899999997 544333345799888766543
No 126
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=48.92 E-value=3.1 Score=32.70 Aligned_cols=45 Identities=27% Similarity=0.703 Sum_probs=29.5
Q ss_pred CCccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 335 DDECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
...| ||..+......+ .|...||..|+.---. ..++...||.|+.
T Consensus 19 ~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHT
T ss_pred ceEe-ECCCcCCCCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCC
Confidence 3468 998876533233 5889999999853211 2234679999975
No 127
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=47.14 E-value=3.8 Score=37.90 Aligned_cols=48 Identities=27% Similarity=0.683 Sum_probs=30.7
Q ss_pred CCCccccccccccccc-cc---ccCCccchhhHHHHHH-cCCCCCCCCcCcccC
Q 007666 334 YDDECAICREPMAKAK-KL---LCNHLFHLACLRSWLD-QGLNEMYSCPTCRKP 382 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~-~l---pCgH~Fh~~Cl~~wl~-~~~~~~~~CP~CR~~ 382 (594)
.+..| +|....++.. .+ .|...||..|+.--.. ....+...||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 34568 9998764322 22 6889999999852111 112336799999864
No 128
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=46.80 E-value=2.7 Score=36.02 Aligned_cols=46 Identities=24% Similarity=0.581 Sum_probs=30.6
Q ss_pred ccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccC
Q 007666 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (594)
Q Consensus 337 ~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (594)
.|.+|.+.-.+.+.+ .|...||..|+.+-+...+...-.||.|+..
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 466777664443444 6889999999986554433334589999664
No 129
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=46.40 E-value=11 Score=32.28 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=19.5
Q ss_pred cccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 347 KAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 347 ~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.++...||+.|. ........||.|+..-..
T Consensus 67 p~~C~~CG~~F~---------~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 67 PAQCRKCGFVFK---------AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CCBBTTTCCBCC---------CCSSCCSSCSSSCCCCBC
T ss_pred CcChhhCcCeec---------ccCCCCCCCcCCCCCccC
Confidence 345568999981 122224799999987654
No 130
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.51 E-value=9.5 Score=32.84 Aligned_cols=42 Identities=24% Similarity=0.502 Sum_probs=27.1
Q ss_pred Cccccccccccc------cccc----ccCCccchhhHHHHH------HcCCCCCCCCcCcc
Q 007666 336 DECAICREPMAK------AKKL----LCNHLFHLACLRSWL------DQGLNEMYSCPTCR 380 (594)
Q Consensus 336 ~~C~IC~e~~~~------~~~l----pCgH~Fh~~Cl~~wl------~~~~~~~~~CP~CR 380 (594)
+.|.+|...-.. +..| .|+..||..|+.... ... .=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTY---KWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHT---TCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCC---ccCccccC
Confidence 579999876421 2222 789999999997542 222 34677774
No 131
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=38.43 E-value=28 Score=33.54 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=23.4
Q ss_pred CCccccccccccccc----ccccCCccchhhHHH
Q 007666 335 DDECAICREPMAKAK----KLLCNHLFHLACLRS 364 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~----~lpCgH~Fh~~Cl~~ 364 (594)
+..|.+|...|.--. .-.||++||..|-..
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 468999999987432 248999999999753
No 132
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=37.38 E-value=7 Score=32.21 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=32.7
Q ss_pred cCCCccccccccc--cccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 333 AYDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 333 ~~~~~C~IC~e~~--~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
+.+..|.||.+.- .....+ .|.-.||..|+..-. . +...-.||.|+....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~-v-P~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY-I-PEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS-C-CSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc-c-CCCceECccccCccc
Confidence 4567899999763 222333 688899999997532 1 122458999977543
No 133
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=37.15 E-value=4.1 Score=35.21 Aligned_cols=47 Identities=23% Similarity=0.574 Sum_probs=31.6
Q ss_pred ccccccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 337 ECAICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 337 ~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
.|.+|...-.+...+ .|...||..|+.+-+...+...-.||.|+...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred ccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 588888764444444 68899999999865544333345799997644
No 134
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=36.78 E-value=4.9 Score=31.95 Aligned_cols=46 Identities=30% Similarity=0.611 Sum_probs=28.8
Q ss_pred Cccccccccccccccc---ccCCccchhhHHHHHHc-----CCCCCCCCcCcccC
Q 007666 336 DECAICREPMAKAKKL---LCNHLFHLACLRSWLDQ-----GLNEMYSCPTCRKP 382 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~-----~~~~~~~CP~CR~~ 382 (594)
..| ||.........+ .|...||..|+.--... ..+....||.|+..
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 456 898876543222 68899999998421110 01125899999764
No 135
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=36.44 E-value=17 Score=28.67 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=22.5
Q ss_pred CCcccccccccccccc----cccCCccchhhHH
Q 007666 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpCgH~Fh~~Cl~ 363 (594)
+..|.+|...|..-.+ -.||++||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 3589999999875422 3799999999964
No 136
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.37 E-value=18 Score=28.39 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.2
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
...|.-|.+.........-+..||..|. .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF------------~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY------------VCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT------------SCSSSCCCHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC------------eeCCCCCCCC
Confidence 4689999998876544567889999884 7889988875
No 137
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.37 E-value=17 Score=29.34 Aligned_cols=40 Identities=15% Similarity=0.409 Sum_probs=31.5
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
....|.-|.+.+.......-+..||..| ..|-.|+.++..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEE------------FNCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTT------------CBCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccC------------CccCCCCCCCCC
Confidence 3467999999986555556789999988 479999988864
No 138
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=35.90 E-value=6.5 Score=30.21 Aligned_cols=43 Identities=26% Similarity=0.718 Sum_probs=27.9
Q ss_pred CCccccccccccccccc---c--cC-CccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 335 DDECAICREPMAKAKKL---L--CN-HLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l---p--Cg-H~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
..-| +|.+... +..+ . |. ..||..|+. +.......-.||.|+.
T Consensus 11 ~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 11 PTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 3456 9988633 3333 3 55 799999996 3333334578999975
No 139
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=35.63 E-value=28 Score=29.70 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=27.6
Q ss_pred CCcccccccccc-----ccccc----ccCCccchhhHHH------HHHcCCCCCCCCcCcc
Q 007666 335 DDECAICREPMA-----KAKKL----LCNHLFHLACLRS------WLDQGLNEMYSCPTCR 380 (594)
Q Consensus 335 ~~~C~IC~e~~~-----~~~~l----pCgH~Fh~~Cl~~------wl~~~~~~~~~CP~CR 380 (594)
...|.+|...-. ++..| .|+..||..|+.. -+... .-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~---~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKAL---RWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTS---CCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhcc---ccccccCC
Confidence 567999987531 12222 7999999999952 12222 45788885
No 140
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.59 E-value=22 Score=27.03 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=30.4
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
...|..|.+.........-+..||.+| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPEC------------FRCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTT------------SBCSSSCCBCSSS
T ss_pred CCcCccCCCEecceEEEECcccccccC------------CEeCCCCCcCCCC
Confidence 457999999887544446788899988 4788998887653
No 141
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=35.50 E-value=21 Score=31.64 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=32.0
Q ss_pred cCCCcccccccccccccccccCCccchhhHHHH-----HHc--CCCCCCCCcCcccC
Q 007666 333 AYDDECAICREPMAKAKKLLCNHLFHLACLRSW-----LDQ--GLNEMYSCPTCRKP 382 (594)
Q Consensus 333 ~~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~w-----l~~--~~~~~~~CP~CR~~ 382 (594)
..++.|.+|.+.-+-.--=.|-..||..||..- +.+ ...+.=.|+.|+.+
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 456789999976221111167899999999864 221 12224689999653
No 142
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.40 E-value=22 Score=26.94 Aligned_cols=39 Identities=26% Similarity=0.705 Sum_probs=30.1
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|..|.+.........-+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKEC------------FVCTACRKQLSG 43 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTT------------SBCSSSCCBCTT
T ss_pred CCCCcccCCeeccceEEECccccCCCC------------CccCCCCCcCCc
Confidence 457999999887554446788999988 478999988753
No 143
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=34.93 E-value=22 Score=37.04 Aligned_cols=51 Identities=22% Similarity=0.448 Sum_probs=34.2
Q ss_pred CCcccccccccccccc-cccCCccchhhHHHHHHcC-CCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~-lpCgH~Fh~~Cl~~wl~~~-~~~~~~CP~CR~~~~~~ 386 (594)
...|++-...+..|.+ ..|.|.-|.+- ..|++.. ....-.||+|.+.+...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccCHH
Confidence 4579999999988855 58999855543 3444321 01146999999887554
No 144
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=34.57 E-value=83 Score=28.49 Aligned_cols=46 Identities=20% Similarity=0.477 Sum_probs=29.5
Q ss_pred CCCcccccccccccc-----cccccCCccchhhHHHHHHcCCCCCCCCcCcccC
Q 007666 334 YDDECAICREPMAKA-----KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~-----~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (594)
.+..|++|..+|.-. ....|+|.+|..|-. |... ...-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~--~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPE--EQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSS--SSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCC--CCcEeeHHHHHH
Confidence 357899999987421 334789999999862 2221 113467777653
No 145
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=34.41 E-value=6.3 Score=34.54 Aligned_cols=45 Identities=20% Similarity=0.423 Sum_probs=30.7
Q ss_pred CCccccccccccccc----ccccCCccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 335 DDECAICREPMAKAK----KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~----~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
...|..|...|..-+ .-.||.+||..|....... ...|-.|...+
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHHHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHHHHH
Confidence 357999999997542 2489999999997654432 46788886543
No 146
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.23 E-value=28 Score=28.00 Aligned_cols=40 Identities=20% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
...|.-|.+.........-+..||.+| ..|-.|+..+...
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPEC------------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTT------------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecccEEEECCceECccC------------CEecCCCCCCCCC
Confidence 457999999887644446788999988 4799999888653
No 147
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.06 E-value=29 Score=27.25 Aligned_cols=40 Identities=20% Similarity=0.491 Sum_probs=31.3
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
...|.-|.+.+.......-|..||.+| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH------------FNCANCGKELTAD 54 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT------------SBCSSSCCBCCTT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC------------CEeCCCCCccCCC
Confidence 467999999888544456788999988 4799999888643
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.68 E-value=26 Score=26.64 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=30.2
Q ss_pred CCcccccccccccc--cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
...|.-|.+..... ....-|..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHC------------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTT------------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCccEEEECccccCccc------------CeECCCCCcCCCC
Confidence 45799999998753 3335788999988 4788998887643
No 149
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.89 E-value=33 Score=26.47 Aligned_cols=39 Identities=15% Similarity=0.384 Sum_probs=30.3
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|+-|-+.........-+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~ 43 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSC------------ALCVRCGQMFAE 43 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTT------------SCCSSSCCCCCS
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCc------------CEeCCCCCCCCC
Confidence 457999999887654456788999988 478889888763
No 150
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=32.56 E-value=11 Score=29.71 Aligned_cols=46 Identities=24% Similarity=0.468 Sum_probs=30.3
Q ss_pred CCCccccccccc--cccccc---ccCCccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 334 YDDECAICREPM--AKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 334 ~~~~C~IC~e~~--~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
.++.|.||.+.- .+...+ .|.-.||..|+..-. -+.+.=.||.|+.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCcC
Confidence 467899998763 222333 688999999996421 1122458999965
No 151
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.45 E-value=23 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.601 Sum_probs=29.8
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|+.|.+.........-|..||..| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEH------------FVCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTT------------CBCTTTCCBCSS
T ss_pred CCCCcccCCEecceEEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999887444446688999988 479999988754
No 152
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.29 E-value=17 Score=34.84 Aligned_cols=29 Identities=21% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCccccccccccccc----ccccCCccchhhHH
Q 007666 335 DDECAICREPMAKAK----KLLCNHLFHLACLR 363 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~----~lpCgH~Fh~~Cl~ 363 (594)
+..|.+|...|.--. .-.||++||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 578999999986432 23799999999964
No 153
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.26 E-value=21 Score=28.86 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCcccccccccccccc----cccCCccchhhHHH
Q 007666 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpCgH~Fh~~Cl~~ 364 (594)
...|.+|...|..-.+ -.||++||..|...
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 4579999999975422 37999999999753
No 154
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=32.09 E-value=22 Score=29.17 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=23.7
Q ss_pred CCcccccccccccccc----cccCCccchhhHHHH
Q 007666 335 DDECAICREPMAKAKK----LLCNHLFHLACLRSW 365 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpCgH~Fh~~Cl~~w 365 (594)
...|.+|...|..-.+ -.||++||..|....
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 4579999999875422 389999999997543
No 155
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.06 E-value=35 Score=26.68 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=30.6
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|+.|.+.+.+.....-+..||.+| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPEC------------FACMSCKVIIED 53 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTS------------CBCTTTCCBCCT
T ss_pred CCcCccCCCCcCceEEEECCceecccc------------CCccCCCCccCC
Confidence 457999999888554446788999988 479999998864
No 156
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.05 E-value=23 Score=27.49 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=30.0
Q ss_pred CCccccccccccccc-ccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~-~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|+.|.+...... ...-+..||.+| ..|..|+.++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC------------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT------------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC------------CCCCCCCCccCC
Confidence 467999999987443 335688999988 479999988864
No 157
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=31.88 E-value=6.6 Score=28.88 Aligned_cols=41 Identities=27% Similarity=0.735 Sum_probs=25.7
Q ss_pred cccccccccccc---ccCCccchhhHHHHHHcCCCCCCCCcCccc
Q 007666 340 ICREPMAKAKKL---LCNHLFHLACLRSWLDQGLNEMYSCPTCRK 381 (594)
Q Consensus 340 IC~e~~~~~~~l---pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~ 381 (594)
||..+......+ .|...||..|+.---. ..++...||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECTTTCCEEETTTTTCCGG-GCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcCCCCccccccccCCCcc-cCCCcEECcCCCC
Confidence 676654432222 5889999999852211 2234679999975
No 158
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=31.33 E-value=27 Score=36.20 Aligned_cols=51 Identities=18% Similarity=0.408 Sum_probs=33.8
Q ss_pred CCcccccccccccccc-cccCCccchhhHHHHHHcC-CCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKK-LLCNHLFHLACLRSWLDQG-LNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~-lpCgH~Fh~~Cl~~wl~~~-~~~~~~CP~CR~~~~~~ 386 (594)
...|++-...+..|.+ ..|.|.=|.+- ..|++.. ....-.||+|.+.+...
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl-~sfL~~~~~~~~W~CPiC~k~~~~~ 267 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDA-ALYLQMNEKKPTWICPVCDKKAAYE 267 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEH-HHHHHHHHHSCCCBCTTTCSBCCGG
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCH-HHHHHHHhhCCCeECCCCCcccCHH
Confidence 3579999999888855 58999855433 3444321 01146999999987654
No 159
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.50 E-value=31 Score=26.32 Aligned_cols=39 Identities=23% Similarity=0.593 Sum_probs=29.3
Q ss_pred CCccccccccccc----ccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~----~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|.-|-+.... .....-+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C------------F~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDC------------FNCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTT------------CBCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCccc------------CEeccCCCcCCC
Confidence 4579999998874 23335688999988 478999988753
No 160
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=30.50 E-value=23 Score=28.52 Aligned_cols=29 Identities=21% Similarity=0.653 Sum_probs=22.8
Q ss_pred CCcccccccccccccc----cccCCccchhhHH
Q 007666 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpCgH~Fh~~Cl~ 363 (594)
...|.+|...|..-.+ -.||++||..|..
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 3579999999975422 3799999999975
No 161
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.45 E-value=24 Score=26.72 Aligned_cols=39 Identities=23% Similarity=0.591 Sum_probs=29.5
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|.-|.+.........-+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADC------------FVCVTCSKKLAG 43 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTT------------TBCTTTCCBCTT
T ss_pred cCCCcccCCEeCcceEEECccccccCc------------CEECCCCCCCCC
Confidence 457999999886544445678899988 478899988753
No 162
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=30.13 E-value=20 Score=29.35 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=23.2
Q ss_pred CCcccccccccccccc----cccCCccchhhHHH
Q 007666 335 DDECAICREPMAKAKK----LLCNHLFHLACLRS 364 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpCgH~Fh~~Cl~~ 364 (594)
...|.+|...|..-.+ -.||++||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4579999999875432 38999999999743
No 163
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=29.80 E-value=33 Score=22.27 Aligned_cols=27 Identities=26% Similarity=0.637 Sum_probs=19.7
Q ss_pred Cccccccccccccccc-ccCCccchhhH
Q 007666 336 DECAICREPMAKAKKL-LCNHLFHLACL 362 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl 362 (594)
+.|+.|-.......++ .-|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 4799999887665544 45788998883
No 164
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.59 E-value=19 Score=30.37 Aligned_cols=12 Identities=33% Similarity=0.971 Sum_probs=11.0
Q ss_pred cchhhHHHHHHc
Q 007666 357 FHLACLRSWLDQ 368 (594)
Q Consensus 357 Fh~~Cl~~wl~~ 368 (594)
||+.||..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999876
No 165
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=29.53 E-value=19 Score=30.30 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=11.0
Q ss_pred cchhhHHHHHHc
Q 007666 357 FHLACLRSWLDQ 368 (594)
Q Consensus 357 Fh~~Cl~~wl~~ 368 (594)
||+.||..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999999875
No 166
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.44 E-value=23 Score=28.64 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCcccccccccccccc----cccCCccchhhHH
Q 007666 335 DDECAICREPMAKAKK----LLCNHLFHLACLR 363 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~----lpCgH~Fh~~Cl~ 363 (594)
...|.+|...|..-.+ -.||.+||..|..
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3579999999965432 3799999999953
No 167
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=29.41 E-value=11 Score=38.28 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=29.6
Q ss_pred CCCccccccccccccccc----ccC--CccchhhHHHHHHcCCCCCCCCcCcccC
Q 007666 334 YDDECAICREPMAKAKKL----LCN--HLFHLACLRSWLDQGLNEMYSCPTCRKP 382 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l----pCg--H~Fh~~Cl~~wl~~~~~~~~~CP~CR~~ 382 (594)
....|++|-......+.. .=| |..|.-|-..|--. ...||.|-..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~----R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV----RIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC----TTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec----CcCCcCCCCC
Confidence 467899999876433211 122 55666777778655 5799999765
No 168
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=29.29 E-value=6.5 Score=30.62 Aligned_cols=44 Identities=25% Similarity=0.601 Sum_probs=26.4
Q ss_pred ccccccccccccccc-----ccCCccchhhHHHHH---H-cCCCCCCCCcCccc
Q 007666 337 ECAICREPMAKAKKL-----LCNHLFHLACLRSWL---D-QGLNEMYSCPTCRK 381 (594)
Q Consensus 337 ~C~IC~e~~~~~~~l-----pCgH~Fh~~Cl~~wl---~-~~~~~~~~CP~CR~ 381 (594)
.| ||.........+ .|...||..|+.--- . ...++...||.||.
T Consensus 12 ~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 12 RC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred Ee-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 47 797765554333 377899999973100 0 01122478999974
No 169
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.73 E-value=34 Score=26.78 Aligned_cols=40 Identities=23% Similarity=0.588 Sum_probs=30.2
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
...|+.|.+.........-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDC------------FVCAVCRLPFPPG 54 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTT------------SSCSSSCCCCCSS
T ss_pred CCcCccccCEeccceEEECCceeCccC------------CccccCCCCCCCC
Confidence 458999999887544446788899988 4788998887643
No 170
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.64 E-value=44 Score=26.39 Aligned_cols=41 Identities=37% Similarity=0.883 Sum_probs=30.4
Q ss_pred CCCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
....|..|.+.+.....+ .-+..||..| ..|-.|+..+...
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSC------------FRCHTCEATLWPG 55 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTT------------CBCSSSCCBCCTT
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCc------------CEEcCCCCCcCCC
Confidence 356899999988654333 5678999999 4788898877653
No 171
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.20 E-value=29 Score=26.89 Aligned_cols=39 Identities=21% Similarity=0.617 Sum_probs=29.4
Q ss_pred CCccccccccccc----ccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAK----AKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~----~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|+.|.+.... .....-+..||.+| ..|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C------------F~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC------------FNCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG------------CBCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc------------CChhhCCCcCCC
Confidence 4579999998875 33335678899998 478899887753
No 172
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=26.77 E-value=26 Score=27.35 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=22.5
Q ss_pred CCccccccccccccccccc-CCccchhhHHHH
Q 007666 335 DDECAICREPMAKAKKLLC-NHLFHLACLRSW 365 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpC-gH~Fh~~Cl~~w 365 (594)
..-|.||.++ ..-+.+.| |-+||..|.++.
T Consensus 8 ~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 8 LPWCCICNED-ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CSSCTTTCSC-CCEEETTTTSEEECSSHHHHH
T ss_pred CCeeEEeCCC-CeEEecCCCCceehHHHHHHH
Confidence 4579999999 33456678 789999996553
No 173
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.24 E-value=17 Score=27.61 Aligned_cols=33 Identities=27% Similarity=0.632 Sum_probs=23.5
Q ss_pred Ccccccccccccc-----ccc-c--cCCccchhhHHHHHHc
Q 007666 336 DECAICREPMAKA-----KKL-L--CNHLFHLACLRSWLDQ 368 (594)
Q Consensus 336 ~~C~IC~e~~~~~-----~~l-p--CgH~Fh~~Cl~~wl~~ 368 (594)
..|+-|....+.. ..- . |+|.||..|..+|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4688888777643 111 2 8999999999888654
No 174
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.22 E-value=37 Score=26.59 Aligned_cols=40 Identities=23% Similarity=0.591 Sum_probs=30.4
Q ss_pred CCCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 334 YDDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
....|+-|.+...+.....-+..||..| ..|..|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGC------------FTCVVCHRGLDG 53 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTT------------CBCSSSCCBCTT
T ss_pred CCCccccCCCeecceeEEECCccccHHh------------cCcccCCCccCC
Confidence 3467999999887544446788899988 479999988753
No 175
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.01 E-value=60 Score=25.62 Aligned_cols=26 Identities=15% Similarity=0.419 Sum_probs=20.8
Q ss_pred HHHHHHHHhhCCCCChHHHHHHhhcc
Q 007666 556 LAMAETVREVLPHMPEDLIFQDLQRT 581 (594)
Q Consensus 556 ~~~~~~v~~~~p~~p~~~~~~~~~~~ 581 (594)
..+.+.+|.=||.||.++|-+=+.+.
T Consensus 11 ~qvfheLkQrFPEvPd~VVsqc~~qN 36 (75)
T 2dae_A 11 FQVLHDLRQKFPEVPEVVVSRCMLQN 36 (75)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHTTT
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 45778899999999999998855443
No 176
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=25.16 E-value=15 Score=38.56 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred CCcccccccccccc----cccccCCccchhhHHHHHHcCC---CCCCCCcCcccCC
Q 007666 335 DDECAICREPMAKA----KKLLCNHLFHLACLRSWLDQGL---NEMYSCPTCRKPL 383 (594)
Q Consensus 335 ~~~C~IC~e~~~~~----~~lpCgH~Fh~~Cl~~wl~~~~---~~~~~CP~CR~~~ 383 (594)
...|.+|...|..- ..-.||++||..|......-+. .....|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 45799999998643 2348999999999876542211 1135677776544
No 177
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.15 E-value=39 Score=25.63 Aligned_cols=40 Identities=20% Similarity=0.595 Sum_probs=30.0
Q ss_pred CCcccccccccccc--cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
...|+.|.+..... ....-|..||..| ..|-.|+.++...
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETC------------FICHRCQQPIGTK 46 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTT------------TCCSSSCCCCCSS
T ss_pred CCCCccCCCcccCCceEEEECcCeecccC------------CcccccCCccCCC
Confidence 45799999998754 3335688899988 4788998887653
No 178
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.06 E-value=46 Score=25.86 Aligned_cols=39 Identities=23% Similarity=0.609 Sum_probs=29.9
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
...|+.|.+.........-+..||..| ..|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHREC------------LVCTGCQTPLAG 53 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTT------------CBCSSSCCBCTT
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhh------------CCcccCCCcCCC
Confidence 457999999887654446788899988 478899988853
No 179
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.04 E-value=49 Score=25.79 Aligned_cols=40 Identities=18% Similarity=0.595 Sum_probs=30.0
Q ss_pred CCcccccccccccc--cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
...|..|.+..... ....-+..||.+| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 56 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDC------------FTCSNCKQVIGTG 56 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTT------------CCCSSSCCCCTTS
T ss_pred CCcCccCCcccccCceEEEECcccccccc------------CchhhCCCccCCC
Confidence 45899999988743 2335688899988 4788999887653
No 180
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=23.48 E-value=6.7 Score=32.98 Aligned_cols=42 Identities=24% Similarity=0.466 Sum_probs=27.7
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
+..|++|..+++.. =++.+|..|-..... ...||.|.+++..
T Consensus 32 ~~~CP~Cq~eL~~~----g~~~hC~~C~~~f~~-----~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQD----NGHARCRSCGEFIEM-----KALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEE----TTEEEETTTCCEEEE-----EEECTTTCSBCEE
T ss_pred cccCccCCCcceec----CCEEECccccchhhc-----cccCcchhhHHHH
Confidence 35899999987632 134446667543222 4689999998864
No 181
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.37 E-value=44 Score=25.93 Aligned_cols=40 Identities=20% Similarity=0.603 Sum_probs=30.3
Q ss_pred CCcccccccccccccccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 335 DDECAICREPMAKAKKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
...|+.|.+.+.......-+..||..| ..|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~~ 54 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAMDTVWHPEC------------FVCGDCFTSFSTG 54 (80)
T ss_dssp SCBCTTTCCBCCSSCEEETTEEECTTT------------CBCSSSCCBSCSS
T ss_pred CCccccCCCeecceeEEECCCeEecCc------------CChhhCCCCCCCC
Confidence 357999999887644445678899888 4799999888653
No 182
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.95 E-value=49 Score=25.07 Aligned_cols=38 Identities=29% Similarity=0.737 Sum_probs=28.8
Q ss_pred CCcccccccccccc--cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 335 DDECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 335 ~~~C~IC~e~~~~~--~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
...|..|.+..... ....-+..||..| ..|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGC------------FVCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTT------------CBCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccC------------CcccccCCcCC
Confidence 45799999987642 3335688999988 47999998884
No 183
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.85 E-value=33 Score=29.71 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=30.1
Q ss_pred CCccccccccccccc-ccccCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 335 DDECAICREPMAKAK-KLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~-~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
...|+-|-+...+.. ...-+..||..| ..|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC------------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT------------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc------------cCcCcCCCccc
Confidence 357999999887664 346788999998 47999998885
No 184
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.49 E-value=38 Score=26.13 Aligned_cols=37 Identities=24% Similarity=0.536 Sum_probs=23.6
Q ss_pred cccccccccccc-cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 337 ECAICREPMAKA-KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 337 ~C~IC~e~~~~~-~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
.|+.|.+..... ....-|..||..| ..|..|+.++..
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 39 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPC------------LKCEKCGKTLTS 39 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTT------------CBCTTTCCBCCT
T ss_pred cCCCCCCEEECceEEEECCccccCCC------------CCccccCccCCC
Confidence 477777776533 2224477788777 367778777654
No 185
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.30 E-value=44 Score=26.34 Aligned_cols=38 Identities=29% Similarity=0.754 Sum_probs=29.0
Q ss_pred CCccccccccccccccc-ccCCccchhhHHHHHHcCCCCCCCCcCcccCCc
Q 007666 335 DDECAICREPMAKAKKL-LCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLF 384 (594)
Q Consensus 335 ~~~C~IC~e~~~~~~~l-pCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~ 384 (594)
...|.-|-+.+.....+ .-+..||.+| ..|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 53 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLALDKQWHVSC------------FKCQTCSVILT 53 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEETTEEECTTT------------CBCSSSCCBCS
T ss_pred CCCCcCcCCeeCCCeEEEECCccccccc------------CCcCcCCCCcC
Confidence 46799999988654333 5678899988 47999988775
No 186
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.05 E-value=15 Score=28.83 Aligned_cols=44 Identities=25% Similarity=0.698 Sum_probs=26.9
Q ss_pred Cccccccccccccccc---c--c-CCccchhhHHHHHHcCCCCCCCCcCcccCC
Q 007666 336 DECAICREPMAKAKKL---L--C-NHLFHLACLRSWLDQGLNEMYSCPTCRKPL 383 (594)
Q Consensus 336 ~~C~IC~e~~~~~~~l---p--C-gH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~ 383 (594)
..| ||..... +..+ . | ...||..|+. +.......-.||.|+...
T Consensus 7 ~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 7 GYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAAM 56 (70)
T ss_dssp CCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHHH
T ss_pred eEE-EcCCCCC-CCEeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCccc
Confidence 346 5877532 3333 3 3 3789999996 333333356899997654
No 187
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.58 E-value=46 Score=25.58 Aligned_cols=41 Identities=27% Similarity=0.583 Sum_probs=30.4
Q ss_pred CCCcccccccccccc-cc-cccCCccchhhHHHHHHcCCCCCCCCcCcccCCcCC
Q 007666 334 YDDECAICREPMAKA-KK-LLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFVG 386 (594)
Q Consensus 334 ~~~~C~IC~e~~~~~-~~-lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~~ 386 (594)
....|+-|.+..... .. ..-|..||..| ..|-.|+.++...
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 52 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPEG 52 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEETTEEECTTT------------CCCTTTCCCCGGG
T ss_pred CCCCchhcCCccCCCceEEEeCccEecccc------------CeECCCCCCCCCC
Confidence 356899999998642 22 36788999988 4788998887653
No 188
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=21.32 E-value=53 Score=28.09 Aligned_cols=38 Identities=26% Similarity=0.721 Sum_probs=28.5
Q ss_pred Ccccccccccccc--cccccCCccchhhHHHHHHcCCCCCCCCcCcccCCcC
Q 007666 336 DECAICREPMAKA--KKLLCNHLFHLACLRSWLDQGLNEMYSCPTCRKPLFV 385 (594)
Q Consensus 336 ~~C~IC~e~~~~~--~~lpCgH~Fh~~Cl~~wl~~~~~~~~~CP~CR~~~~~ 385 (594)
+.|..|.+.+... ....-++.||..| ..|-.|.+.+..
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLEC------------FKCAACQKHFSV 48 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTT------------CBCTTTCCBCCT
T ss_pred CcccCCCCeecCCceEEEECCccccccc------------CccccCCCCCCC
Confidence 3799999988742 2235588999988 478999988843
No 189
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=21.05 E-value=1.1e+02 Score=25.90 Aligned_cols=31 Identities=23% Similarity=0.567 Sum_probs=19.7
Q ss_pred ccCCccchhhHH------HHHHc-CCCCCCCCcCcccC
Q 007666 352 LCNHLFHLACLR------SWLDQ-GLNEMYSCPTCRKP 382 (594)
Q Consensus 352 pCgH~Fh~~Cl~------~wl~~-~~~~~~~CP~CR~~ 382 (594)
.|++.||..|.. .-+.+ +......||.|...
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 488999999962 12222 11225799999653
Done!