BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007667
(594 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 344 CNPQSRDIILQLVERILSSPKARTILVNGAVRK-GERLVPPSALETLLRLTFPTSSARVK 402
P+SRD IL ER LSSP +++GA+R GE+ + E + SARVK
Sbjct: 117 LTPKSRDYILSFGER-LSSP-----ILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVK 170
Query: 403 ATERFEAIYPTLKEVALAGVPG 424
E E + P LKE + V G
Sbjct: 171 RLEVKERLLPLLKEGIIPVVTG 192
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 344 CNPQSRDIILQLVERILSSPKARTILVNGAVRK-GERLVPPSALETLLRLTFPTSSARVK 402
P+SRD IL ER LSSP +++GA+R GE+ + E + SARVK
Sbjct: 116 LTPKSRDYILSFGER-LSSP-----ILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVK 169
Query: 403 ATERFEAIYPTLKEVALAGVPG 424
E E + P LKE + V G
Sbjct: 170 RLEVKERLLPLLKEGIIPVVTG 191
>pdb|2OJK|A Chain A, Crystal Structure Of Green Fluorescent Protein From
Zoanthus Sp At 2.2 A Resolution
pdb|2OJK|B Chain B, Crystal Structure Of Green Fluorescent Protein From
Zoanthus Sp At 2.2 A Resolution
Length = 229
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 467 DCYKHWDKLYEANLEGSVKVLKKLSEEWKEHSAKLSPLDPFRATLK 512
+C H K Y N V+KK+++ W+ K+ P+ P + LK
Sbjct: 116 NCMYHESKFYGVNFPADGPVMKKMTDNWEPSCEKIIPV-PKQGILK 160
>pdb|2PXS|A Chain A, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.2 A Resolution (mature
State)
pdb|2PXS|B Chain B, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.2 A Resolution (mature
State)
pdb|2PXW|A Chain A, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.4 A Resolution
(transition State)
pdb|2PXW|B Chain B, Crystal Structure Of N66d Mutant Of Green Fluorescent
Protein From Zoanthus Sp. At 2.4 A Resolution
(transition State)
Length = 227
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 467 DCYKHWDKLYEANLEGSVKVLKKLSEEWKEHSAKLSPLDPFRATLK 512
+C H K Y N V+KK+++ W+ K+ P+ P + LK
Sbjct: 114 NCMYHESKFYGVNFPADGPVMKKMTDNWEPSCEKIIPV-PKQGILK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,545,125
Number of Sequences: 62578
Number of extensions: 519955
Number of successful extensions: 1273
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 7
length of query: 594
length of database: 14,973,337
effective HSP length: 104
effective length of query: 490
effective length of database: 8,465,225
effective search space: 4147960250
effective search space used: 4147960250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)