Query 007667
Match_columns 594
No_of_seqs 92 out of 94
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 07:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007667.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007667hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vglb_ a.118.1.10 (B:) Adapti 45.0 21 0.0016 35.7 7.8 95 212-321 359-454 (579)
2 d1tx4a_ a.116.1.1 (A:) p50 Rho 32.8 83 0.006 26.8 8.8 102 378-497 92-195 (196)
3 d1zavu1 a.108.1.1 (U:1-30) Rib 15.4 48 0.0035 21.4 2.4 24 143-166 6-29 (30)
4 d1qgta_ a.62.1.1 (A:) Hepatiti 13.2 43 0.0031 28.4 2.2 33 328-360 59-93 (142)
5 d2bl8a1 a.29.8.2 (A:4-103) Ent 12.7 50 0.0037 27.0 2.4 33 151-183 20-57 (100)
6 d1m15a1 a.83.1.1 (A:2-95) Argi 12.5 85 0.0062 25.2 3.8 76 403-481 5-86 (94)
7 d1xqra1 a.118.1.21 (A:87-350) 12.4 2.4E+02 0.017 24.0 7.4 130 308-457 75-209 (264)
8 d2vgla_ a.118.1.10 (A:) Adapti 11.0 2.8E+02 0.02 27.0 8.2 46 435-480 180-225 (584)
9 d1orja_ a.24.19.1 (A:) Flagell 10.9 1.2E+02 0.0088 24.6 4.4 64 434-502 60-124 (126)
10 d1xqra1 a.118.1.21 (A:87-350) 10.2 4.1E+02 0.03 22.4 8.3 105 434-548 144-262 (264)
No 1
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.03 E-value=21 Score=35.74 Aligned_cols=95 Identities=18% Similarity=0.329 Sum_probs=60.2
Q ss_pred CCCCChHHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhhhhcCCCcccchhhhhcccccchHHHHHHHHHHhhcChhHHH
Q 007667 212 LSQIPDVVYKTSIDWINQRSPEVLGSFVLWCLDSILADVETHNVSSKASKKVVQQASSKSQVAIFVALAMVLRRKPDVLI 291 (594)
Q Consensus 212 Ls~ip~~v~ktsidwi~q~~~~~L~~Fv~~~L~~mltdL~~~qg~~k~~~~~~q~~~~~s~vG~~V~LQmIlr~kP~il~ 291 (594)
+...+..++..+++-|.+... .......||++.++.-+..... ... +..+ +++.-++|..|+.-.
T Consensus 359 ~~~~d~~~~~~ai~aI~~la~-~~~~~~~~~i~~Ll~ll~~~~~------~v~-------~e~i-~~i~~i~~~~p~~~~ 423 (579)
T d2vglb_ 359 ATEVDVDFVRKAVRAIGRCAI-KVEQSAERCVSTLLDLIQTKVN------YVV-------QEAI-VVIRDIFRKYPNKYE 423 (579)
T ss_dssp TTSSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHTCCH------HHH-------HHHH-HHHHHHHHHSCSSCC
T ss_pred hhcCCHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHhCCch------hHH-------HHHH-HHHHHHHHhChHHHH
Confidence 455667777777777766543 3455678999988876654311 111 1223 355666799998777
Q ss_pred hhHHHHHHhhh-hhCCCchhHHHHHhhhhcc
Q 007667 292 GVLPALRENAK-YQGQDKLPVIVWMIAQASQ 321 (594)
Q Consensus 292 ~~L~kl~~ns~-~nr~~k~lsilWaigQAg~ 321 (594)
..++.+.+.-. -..|...-.++|.+|+=|.
T Consensus 424 ~ii~~L~~~l~~~~~~~~~~~~iwilGEy~~ 454 (579)
T d2vglb_ 424 SIIATLCENLDSLDEPDARAAMIWIVGEYAE 454 (579)
T ss_dssp TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHhCccc
Confidence 77777765322 2345566778999999653
No 2
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.79 E-value=83 Score=26.80 Aligned_cols=102 Identities=19% Similarity=0.117 Sum_probs=58.8
Q ss_pred CcccCchhHHHHHHhhCCCCchhhhHHHHHHHhccchhhhhhcCCCCchhHHHHHHHHHHHHHHHhccCC-hhhHHHHH-
Q 007667 378 ERLVPPSALETLLRLTFPTSSARVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGEST-PDLSNEAA- 455 (594)
Q Consensus 378 ~~lI~p~~f~~ll~~tfP~~sarvkaterfeaiYP~LKelAlag~p~S~a~Kqv~qqiF~~~L~~a~~~~-~~l~kE~~- 455 (594)
+.+||...++.++...--....+..+..++....|... ..+.+.++.++-..+...+ -.|.-+-+
T Consensus 92 ~pLi~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~~-------------~~~L~~l~~~l~~i~~~~~~nkM~~~nLa 158 (196)
T d1tx4a_ 92 EPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEEN-------------YQVLRFLTAFLVQISAHSDQNKMTNTNLA 158 (196)
T ss_dssp SCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHH-------------HHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred CCcchHHHHHHHHHHHhcChHHHHHHHHHHHHHCCHHH-------------HHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 46889999999988765444445555555555444322 3344466666655553221 12333333
Q ss_pred HHHHHhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 007667 456 GIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEH 497 (594)
Q Consensus 456 ~~lI~CLt~d~dC~k~Wr~lY~knl~qS~~LL~~L~~~W~~~ 497 (594)
-++-=||...++ ...-.+++.....++++|.++|+++
T Consensus 159 ~~f~P~l~~~~~-----~~~~~~~~~~~~~~~~~LI~~~~~i 195 (196)
T d1tx4a_ 159 VVFGPNLLWAKD-----AAITLKAINPINTFTKFLLDHQGEL 195 (196)
T ss_dssp HHHHHHHCCCSS-----HHHHHHTHHHHHHHHHHHHHTHHHH
T ss_pred HHHhhhhcCCCC-----cchhHHHHHHHHHHHHHHHHhHHhh
Confidence 233346666553 2223456677788999999998764
No 3
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=15.36 E-value=48 Score=21.44 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=20.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhccC
Q 007667 143 VAEAAAKLDATDLSAFLIDISGTY 166 (594)
Q Consensus 143 LeeAa~~Id~~dL~~~L~~v~~sf 166 (594)
+-+|+.++.+++|+.......+.|
T Consensus 6 iv~aiekltvaelaelvk~ledkf 29 (30)
T d1zavu1 6 IIEAIEKLTVSELAELVKKLEDKF 29 (30)
T ss_dssp HHHHHHHSBHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhc
Confidence 457899999999999988888776
No 4
>d1qgta_ a.62.1.1 (A:) Hepatitis B viral capsid (hbcag) {Hepatitis B virus [TaxId: 10407]}
Probab=13.25 E-value=43 Score=28.37 Aligned_cols=33 Identities=27% Similarity=0.596 Sum_probs=23.2
Q ss_pred HHHHHHhh-hhcccCCCC-CcchHHHHHHHHHHHh
Q 007667 328 LYSWAHNL-LPIVGGKNC-NPQSRDIILQLVERIL 360 (594)
Q Consensus 328 L~vW~~iL-LPvL~~Ks~-sp~srdlilqylErIL 360 (594)
+.+|-++| |..-.+.++ .|.+||+++.|++.-+
T Consensus 59 ilCWgelm~latWvg~nled~~sr~lvv~yvn~nm 93 (142)
T d1qgta_ 59 ILCWGELMTLATWVGNNLEDPASRDLVVNYVNTNM 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHccCcCCHHHhHHhhhhccccc
Confidence 55666665 333334455 7999999999998766
No 5
>d2bl8a1 a.29.8.2 (A:4-103) Enterocine A immunity protein, EntA-Im {Enterococcus faecium [TaxId: 1352]}
Probab=12.67 E-value=50 Score=27.02 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHhhccCCc-----cHHHHHHHHHHHHhh
Q 007667 151 DATDLSAFLIDISGTYED-----KQDIQMMRFADYFGR 183 (594)
Q Consensus 151 d~~dL~~~L~~v~~sfp~-----~p~iwLk~~AdYln~ 183 (594)
+..|+.+.|.+|..+|++ +|+-|..|++-|+..
T Consensus 20 ~y~dI~dvL~~V~~K~d~~k~~~~p~al~nrLV~YI~~ 57 (100)
T d2bl8a1 20 KYSDILEVLQKVYLKLEKQKYELDPSPLINRLVNYLYF 57 (100)
T ss_dssp GGHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHHHH
Confidence 367999999999999987 899999999999954
No 6
>d1m15a1 a.83.1.1 (A:2-95) Arginine kinase, N-domain {Horseshoe crab (Limulus polyphemus) [TaxId: 6850]}
Probab=12.50 E-value=85 Score=25.19 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=46.9
Q ss_pred HHHHHHHhccchhhhhhcCCCCchhHHHHHHHHHHHHHHHhccCChhhHHHHHHH------HHHhhccCchHHHHHHHHH
Q 007667 403 ATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGI------FIWCLTQSADCYKHWDKLY 476 (594)
Q Consensus 403 aterfeaiYP~LKelAlag~p~S~a~Kqv~qqiF~~~L~~a~~~~~~l~kE~~~~------lI~CLt~d~dC~k~Wr~lY 476 (594)
+.+++++.|+.|+ .+..-.|-+-|..++.+|..+=..-....-.|.+.+-.+ -+-|..-|++||.++..++
T Consensus 5 ~~~~~~~~~~~l~---~~~~~~SLl~K~LT~ev~~~lk~k~T~~G~tl~~~I~sGv~n~ds~vGiyAgD~esY~vF~~lF 81 (94)
T d1m15a1 5 TLDKLEAGFKKLQ---EASDCKSLLKKHLTKDVFDSIKNKKTGMGATLLDVIQSGVENLDSGVGIYAPDAESYRTFGPLF 81 (94)
T ss_dssp HHHHHHHHHHHHH---HCTTCCCHHHHHCCHHHHHHHTTCBCTTCCBHHHHHHHHHHCTTCSSCCCCSSSTHHHHTHHHH
T ss_pred HHHHHHHhHHHHh---ccccchHHHHHhCCHHHHHHHhcCCCCCCCcHHHHHHhcccCCCCCCceeeCCHHHHHHHHHHH
Confidence 4567788888876 344445656667888888886543333333343332222 2334555899999999888
Q ss_pred HHhHH
Q 007667 477 EANLE 481 (594)
Q Consensus 477 ~knl~ 481 (594)
...++
T Consensus 82 dpvI~ 86 (94)
T d1m15a1 82 DPIID 86 (94)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 7
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.41 E-value=2.4e+02 Score=24.04 Aligned_cols=130 Identities=12% Similarity=0.104 Sum_probs=63.9
Q ss_pred chhHHHHHhhhhcccchhhHHHHHHHhhhhcccC---CCCCcchHHHHHHHHHHHhc-CccchhhhcccccccCCcccCc
Q 007667 308 KLPVIVWMIAQASQGELAVGLYSWAHNLLPIVGG---KNCNPQSRDIILQLVERILS-SPKARTILVNGAVRKGERLVPP 383 (594)
Q Consensus 308 k~lsilWaigQAg~~DL~vGL~vW~~iLLPvL~~---Ks~sp~srdlilqylErILs-~~kar~il~n~av~kg~~lI~p 383 (594)
.....+|+++...++|..+-..++.+-.+|.|.. ...++.++.-.+.-+..+.+ .+..+.. .+..
T Consensus 75 vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~-----------~~~~ 143 (264)
T d1xqra1 75 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ-----------FLRL 143 (264)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHH-----------HHHh
Confidence 3445678888888888877777776665555521 12245555555555555552 2222222 1223
Q ss_pred hhHHHHHHhhCCCCch-hhhHHHHHHHhccchhhhhhcCCCCchhHHHHHHHHHHHHHHHhccCChhhHHHHHHH
Q 007667 384 SALETLLRLTFPTSSA-RVKATERFEAIYPTLKEVALAGVPGSKAMKQVSLQILSFAIKFAGESTPDLSNEAAGI 457 (594)
Q Consensus 384 ~~f~~ll~~tfP~~sa-rvkaterfeaiYP~LKelAlag~p~S~a~Kqv~qqiF~~~L~~a~~~~~~l~kE~~~~ 457 (594)
.-+..|+++....+.. +.++..-+. .++. +.|....+ -+....++.++......+++++..++..
T Consensus 144 ~gi~~L~~lL~~~~~~~~~~a~~~L~-------~l~~-~~~~~~~~-~~~~~~v~~L~~lL~~~~~~~~~~a~~a 209 (264)
T d1xqra1 144 DGFSVLMRAMQQQVQKLKVKSAFLLQ-------NLLV-GHPEHKGT-LCSMGMVQQLVALVRTEHSPFHEHVLGA 209 (264)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHH-------HHHH-HCGGGHHH-HHHTTHHHHHHHHHTSCCSTHHHHHHHH
T ss_pred hhhhHHHHHHhcCchHHHHHHHHHHH-------HHHh-ccHHHHHH-HHHhhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 3456666666443322 122221111 1111 12222111 0111356777777776777776655443
No 8
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.96 E-value=2.8e+02 Score=26.97 Aligned_cols=46 Identities=11% Similarity=0.093 Sum_probs=25.9
Q ss_pred HHHHHHHHhccCChhhHHHHHHHHHHhhccCchHHHHHHHHHHHhH
Q 007667 435 ILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANL 480 (594)
Q Consensus 435 iF~~~L~~a~~~~~~l~kE~~~~lI~CLt~d~dC~k~Wr~lY~knl 480 (594)
+++.+.....+.+|....-++..+.++...+++.|+.|...+...+
T Consensus 180 ~~~~L~~lL~D~d~~V~~aAl~ll~eI~~~~p~~~~~~~~~~i~~L 225 (584)
T d2vgla_ 180 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRL 225 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3455555555556665555566666666666666655555444443
No 9
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=10.90 E-value=1.2e+02 Score=24.56 Aligned_cols=64 Identities=22% Similarity=0.362 Sum_probs=37.5
Q ss_pred HHHHHHHHHh-ccCChhhHHHHHHHHHHhhccCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhccC
Q 007667 434 QILSFAIKFA-GESTPDLSNEAAGIFIWCLTQSADCYKHWDKLYEANLEGSVKVLKKLSEEWKEHSAKLS 502 (594)
Q Consensus 434 qiF~~~L~~a-~~~~~~l~kE~~~~lI~CLt~d~dC~k~Wr~lY~knl~qS~~LL~~L~~~W~~~s~KL~ 502 (594)
.|+..+.... .+...+++..+-..-.+|..+-..+ +.=.+.+....-+|.-|.+.|.++..|++
T Consensus 60 ~Ii~~L~~~Ld~e~GgeiA~nL~~lY~~~~~~L~~a-----~~~~~~i~e~~~il~~l~eaW~~i~~~~~ 124 (126)
T d1orja_ 60 DIISALKSFLDHEKGKEIAKNLDTIYTIILNTLVKV-----DKTKEELQKILEILKDLREAWEEVKKKVH 124 (126)
T ss_dssp HHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHHHHCT-----TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4554444444 2334455555554444444432221 11234577788999999999999998863
No 10
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.21 E-value=4.1e+02 Score=22.38 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=55.0
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHHHHhhccCchHHHHHHH-H------------HHHhHHHHHHHHHHHHHHHHhhhhc
Q 007667 434 QILSFAIKFAGESTPDLSNEAAGIFIWCLTQSADCYKHWDK-L------------YEANLEGSVKVLKKLSEEWKEHSAK 500 (594)
Q Consensus 434 qiF~~~L~~a~~~~~~l~kE~~~~lI~CLt~d~dC~k~Wr~-l------------Y~knl~qS~~LL~~L~~~W~~~s~K 500 (594)
..++.++......++.+...++..+-.++..+++-...-.. - +.+..+.....|..|.....+....
T Consensus 144 ~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~ 223 (264)
T d1xqra1 144 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE 223 (264)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 34777888887788888888777666666555543322111 0 1122333344555555544443333
Q ss_pred cC-CCchHHHHHHHHHhcCcccccCCcchhchhhHHHHHHHHHHHHhhh
Q 007667 501 LS-PLDPFRATLKSFRQKNEKGIGGTADAACQSLLRNADKYCKLVSGKL 548 (594)
Q Consensus 501 L~-~~~~L~~Tlksfr~~Ne~~~~~~~~~~~~~~~k~adk~Ck~il~kl 548 (594)
.. +.-.+++.++.+...++. ...+.+.-.+|+.|+.+.
T Consensus 224 ~~~~~l~~~~~L~~~~~~~~~----------~~~~~e~~~~~~~ll~~~ 262 (264)
T d1xqra1 224 CREPELGLEELLRHRCQLLQQ----------HEEYQEELEFCEKLLQTC 262 (264)
T ss_dssp HHCGGGCHHHHHHHHHHHHTT----------CGGGHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHhccc----------hHHHHHHHHHHHHHHHHh
Confidence 21 111245555555333221 123567777888887653
Done!