BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007670
(594 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4I6M4|SP2L_ARATH Microtubule-associated protein SPIRAL2-like OS=Arabidopsis thaliana
GN=SP2L PE=2 SV=1
Length = 821
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 148/530 (27%), Positives = 258/530 (48%), Gaps = 47/530 (8%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKE 62
LK + L++L DRDTY A +L+ I +V P +LP L C+ ++S K V++E
Sbjct: 37 LKQRILTSLSRLGDRDTYQIAVDDLEKIVVSVPDSPEILPVLLHCLFDSSSDLKAPVKRE 96
Query: 63 CIHVIATLSNSH-NLS-PYITKIINSITRNFRDKNSALQATCISTVSSLSPR-------- 112
I +++ L S+ +LS + KII+ I + +D ++ ++ C + SLS +
Sbjct: 97 SIRLLSFLCLSYTDLSFSQLAKIISHIVKRLKDADNGVRDACRDAIGSLSAQFLKEKEVE 156
Query: 113 ----VGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168
VG+S K L +A+ EQ+ + Q GAA+C+ ID+A +P ++ R+
Sbjct: 157 NGNYVGSSLVGLFAKPLFEAM-AEQNKSLQSGAAICMGKMIDSATEPPVAAFQKLCPRIS 215
Query: 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228
+LL S + KA+ L VVGS+ GA+ L+ L+ + L +W RKAAA+ L
Sbjct: 216 KLLNSPNYITKASLLPVVGSLSQVGAIAPQSLESLLHSIHECLGCTNWVTRKAAADVLIS 275
Query: 229 LAVVEKDAVPEFKGKCLKIFESKRFDKM----------IEAWKQVPDLSEEASPPPQSLD 278
LAV V + L E+ RFDK+ + WK + E + Q
Sbjct: 276 LAVHSSSLVADKTDSTLTALEACRFDKIKPVRESLSEALNVWKNIAGKGESGTMDDQKDV 335
Query: 279 PSKEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSSFPTTARKRG---FLKKVSP 335
S++ +R T+S S GL ++ S S+ S RK+ K ++P
Sbjct: 336 SSEQCILERNGETDSVSCEEAGLVMQGSCDGLSSSSDSISKAVLILRKKAPRLTGKDLNP 395
Query: 336 AVLHKVDQKKPSDWRDQISAP------SGASLVDAHEDGT-VLKIRNNENTKLPKPETKR 388
K++++ D ++ P S ++ D + T VL+ R+N + TK+
Sbjct: 396 EFFQKLEKRGSGDMPVEVILPSRQKNSSNSNTEDESDANTSVLRSRSNGLCRTAGVHTKQ 455
Query: 389 ALF-NWSSDDKVHKLRSG--SRVTPYNEESHEFTVSDNTENLHIKHKDCEDLSTIRNQLV 445
F +++ + V + +G SR+ ++ + E +D +EN + ++ QL+
Sbjct: 456 RHFGDFAREKWVDERMNGGESRLRAFDGDHTEVIQADTSENRG-------NWPPLQRQLL 508
Query: 446 QIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTG 495
+E+QQ+ ++++LQ F+G S GM SLE RV GLE ++E+S ++++ +G
Sbjct: 509 HLERQQTHIMNMLQDFMGGSHDGMISLENRVRGLERIVEEMSREMSIQSG 558
>sp|Q9T041|MAPT_ARATH Microtubule-associated protein TORTIFOLIA1 OS=Arabidopsis thaliana
GN=TOR1 PE=1 SV=2
Length = 864
Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 156/543 (28%), Positives = 261/543 (48%), Gaps = 69/543 (12%)
Query: 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECI 64
LK + ++KL+DRDTY A ++L+ ++ P LP FL+C+ + S KP V+KEC+
Sbjct: 42 LKQKILTSISKLADRDTYQIAVEDLEKTIQSLTPETLPMFLNCLYDSCSDPKPAVKKECL 101
Query: 65 HVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS----------PR 112
H+++ + + H + + ++TKII I + +D +S ++ C T+ +LS
Sbjct: 102 HLLSYVCSLHCDSTAAHLTKIIAQIVKRLKDSDSGVRDACRDTIGALSGIYLKGKEEGTN 161
Query: 113 VGASAFVTML--KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170
G+++ L K L +A+ EQ+ Q GA++C+A +++A P ++ R+ +L
Sbjct: 162 TGSASLAVGLFVKPLFEAM-GEQNKVVQSGASMCMARMVESAASPPVTSFQKLCPRICKL 220
Query: 171 LKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230
L + F AKA+ L VV S+ GA+ L+ L+ + L S DW RKAAAE L LA
Sbjct: 221 LSNSSFLAKASLLPVVSSLSQVGAIAPQSLESLLESIHDCLGSTDWVTRKAAAETLTALA 280
Query: 231 VVEKDAVPEFKGKCLKIFESKRFDKM----------IEAWKQVPDLSEEASPPPQSLDPS 280
+ E + + E+ RFDK+ ++ WK++ + + L S
Sbjct: 281 SHSSGLIKEKTDSTITVLETCRFDKIKPVRESVTEALQLWKKISGKYVDGASDDSKLSAS 340
Query: 281 KEDGSDRRYLTESRSSSTKGLELKKRSILASKSTPPDSS------FPTTARKRGFLKKVS 334
++ GS++ E RS+ +L K+ + PDS+ FP A G LKK +
Sbjct: 341 EQLGSEKN--GEKRSNLA---DLMKKEASDGSTLSPDSASKGKGCFPEKA--VGLLKKKA 393
Query: 335 PAVLHKVD------QKKPSDWRDQISAPSGASLVDAHEDGTVLKIRNNENTKLPKPETKR 388
P VL D Q+ ++ P D E G L +
Sbjct: 394 P-VLSDKDFNPEFFQRLERRQSVEVVVPRRCKNNDEEESGL---------DDLNAMGSSN 443
Query: 389 ALFNWSSDDKVHKLR---SGSRVTPYNEESHEFTVSDNTENLH--IKHKDCE-------- 435
L N +DDK K R +GS+ ++ T H + + D +
Sbjct: 444 RLKNTQADDKQVKGRFDGNGSQARTSGDDKAGVVNGKETPGHHAPVSNTDNQSEGSFTSN 503
Query: 436 --DLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVS 493
+ S I+ QL+Q+E+QQ++L+++LQ FIG S M +LE RV GLE +++++ DL++S
Sbjct: 504 RGNWSAIQRQLLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSIS 563
Query: 494 TGR 496
+GR
Sbjct: 564 SGR 566
>sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YEF3 PE=1 SV=4
Length = 1044
Score = 42.0 bits (97), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 64 IHVIATLSNSHNLSP----YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119
+ +A ++N NLSP YI +++ +I N +K+ +Q+ T+ S+ V A
Sbjct: 68 MQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK 127
Query: 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160
+L L++A+ ++ ++A +DAA+D A ++
Sbjct: 128 ALLPHLTNAIVETNKWQEKIAILAAISAMVDAAKDQVALRM 168
>sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GCN1 PE=1 SV=1
Length = 2672
Score = 37.4 bits (85), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 60 RKECIHV--IATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117
RK C V +A L ++ +L PY+ ++I+ + D +AT + +L R+G
Sbjct: 1583 RKACKIVGNMAILVDTKDLIPYLQQLIDEVEIAMVDPVPNTRATAARALGALVERLGEEQ 1642
Query: 118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATI 149
F ++ L D L E + ++G+A LA I
Sbjct: 1643 FPDLIPRLLDTLSDESKSGDRLGSAQALAEVI 1674
>sp|Q5VYK3|ECM29_HUMAN Proteasome-associated protein ECM29 homolog OS=Homo sapiens GN=ECM29
PE=1 SV=2
Length = 1845
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 17/201 (8%)
Query: 58 GVRKECIHVIATLSNS--HNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115
G + C VI +L+ +L+PY K+++++ D+NS +Q +C + L
Sbjct: 1374 GTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLTDRNSVIQKSCAFAMGHLVRTSRD 1433
Query: 116 SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK-----------LGRME 164
S+ +L+ L+ +++ + AL + A PD K LG E
Sbjct: 1434 SSTEKLLQKLNGWYMEKEEPIYKTSCALTIHAI--GRYSPDVLKNHAKEVLPLAFLGMHE 1491
Query: 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAE 224
+ E KSE + V +V GS L+ L++ L SQ W + A
Sbjct: 1492 IADEE--KSEKEECNLWTEVWQENVPGSFGGIRLYLQELITITQKALQSQSWKMKAQGAI 1549
Query: 225 ALWRLAVVEKDAVPEFKGKCL 245
A+ +A VP + G L
Sbjct: 1550 AMASIAKQTSSLVPPYLGMIL 1570
>sp|Q6BXI1|SEC16_DEBHA COPII coat assembly protein SEC16 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SEC16 PE=3 SV=2
Length = 2130
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 23/157 (14%)
Query: 365 HEDGTVLKIRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRVTPYNEESHEFTVSDNT 424
H++ T K+ N N L + + +FNWSS + L + YN S V+D
Sbjct: 905 HKEQTAPKVEN-PNALL---QRQFPIFNWSSSKNIAYLIPSAVTNTYNRTSESVNVTD-- 958
Query: 425 ENLHIKH--KDCEDLSTIR---NQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGL 479
IK+ KD LST N+L ++ L+ F+ ++ +GM+ E V +
Sbjct: 959 ----IKYVLKDSHYLSTFPGPFNKLKTKKKDVEKWLESYNEFLIQNNTGMKQDEVLVSQI 1014
Query: 480 ELALDEISYDLAVSTGRMTKTNSHGATCCIL-PGADF 515
LAL + ++ + TK A C +L P D+
Sbjct: 1015 LLAL--VRFNGDCKSDDFTK-----AACAVLNPSVDY 1044
>sp|B5XTJ9|NIKR_KLEP3 Nickel-responsive regulator OS=Klebsiella pneumoniae (strain 342)
GN=nikR PE=3 SV=1
Length = 132
Score = 37.0 bits (84), Expect = 0.50, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 373 IRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRVTPYNEESHEFTVSDNTENLHIKHK 432
+R+ N P PE++R S + K SR+ H+ +V+ T ++HI H+
Sbjct: 36 LRDALNQDPPSPESRRGYAVLSYVYEHEKRELASRLVATQHHHHDLSVA--TLHVHISHE 93
Query: 433 DCEDLSTIRNQLVQIEQ 449
DC +++ ++ + +++
Sbjct: 94 DCLEIAVLKGDMAEVQH 110
>sp|A6TFA8|NIKR_KLEP7 Nickel-responsive regulator OS=Klebsiella pneumoniae subsp.
pneumoniae (strain ATCC 700721 / MGH 78578) GN=nikR PE=3
SV=1
Length = 132
Score = 36.2 bits (82), Expect = 0.76, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 373 IRNNENTKLPKPETKRALFNWSSDDKVHKLRSGSRVTPYNEESHEFTVSDNTENLHIKHK 432
+R+ N P PE++R S + K SR+ H+ +V+ T ++HI H
Sbjct: 36 LRDALNQDPPSPESRRGYAVLSYVYEHEKRELASRLVATQHHHHDLSVA--TLHVHISHD 93
Query: 433 DCEDLSTIRNQLVQIEQ 449
DC +++ ++ + +++
Sbjct: 94 DCLEIAVLKGDMAEVQH 110
>sp|Q75EV6|EF3_ASHGO Elongation factor 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=TEF3 PE=3 SV=2
Length = 1044
Score = 36.2 bits (82), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 64 IHVIATLSNSHNLSP----YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119
+ IA ++N +NLSP YI ++ + DK+ +Q+ T+ ++ + A
Sbjct: 68 LETIAHIANENNLSPSVEPYIVDLVPEVCVKTGDKDKDVQSIASETLLAIVKAIDPVAIK 127
Query: 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153
+L L+ +L T +V ++A +DAA+
Sbjct: 128 VILPHLTKSLVTTNKWQEKVSVLAAISALVDAAK 161
>sp|Q6ZWR6|SYNE1_MOUSE Nesprin-1 OS=Mus musculus GN=Syne1 PE=1 SV=2
Length = 8799
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 432 KDCEDLS-TIRNQLVQIEQQQSSLLDLLQ----RFIGRSESGMQSLETRVLGLELALDEI 486
KDC++L I+ + ++E+ + + L L+Q G S +Q L + L+ ++++
Sbjct: 7065 KDCQELEDLIKAKEKEVEKIEQNGLALIQNKREEVSGSVMSTLQELRQTWISLDRTVEQL 7124
Query: 487 SYDLAVSTGRMTKTNSHGATCCILPGADFLSSKFWRKTEGRYSPSKFSTSSGTSSLTAMN 546
L + G+ + +H A C + G E RYS S+F +G+S +
Sbjct: 7125 KIQLTSALGQWS---NHKAACDEING---------HLMEARYSLSRFRLLTGSSEAVQVQ 7172
Query: 547 YGTNKDRYAEKLKLENRRSRFQSSGGFIVNPLAEIHP 583
++ + E LE + Q G L E HP
Sbjct: 7173 VDNLQNLHDE---LEKQEGGLQKFGSITNQLLKECHP 7206
>sp|Q5R6J0|ECM29_PONAB Proteasome-associated protein ECM29 homolog (Fragment) OS=Pongo
abelii GN=ECM29 PE=2 SV=2
Length = 1810
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 80/201 (39%), Gaps = 17/201 (8%)
Query: 58 GVRKECIHVIATLSNS--HNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115
G + C VI +L+ +L+PY K+++++ D+NS +Q +C + L
Sbjct: 1339 GTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLTDRNSVIQKSCAFAMGHLVRTSRD 1398
Query: 116 SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK-----------LGRME 164
S+ +L+ L+ +++ + AL + A PD K LG E
Sbjct: 1399 SSTEKLLQKLNGWYMEKEEPIYKTSCALTIHAI--GRYSPDVLKNHAKEVLPLAFLGMHE 1456
Query: 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAE 224
E KSE + V +V GS L+ L++ L SQ W + A
Sbjct: 1457 AADEE--KSEKEECNLWTEVWQENVPGSFGGIRLYLQELITITQKALQSQSWKMKAQGAI 1514
Query: 225 ALWRLAVVEKDAVPEFKGKCL 245
A+ +A VP + G L
Sbjct: 1515 AMASIAKQTSSLVPPYLGMIL 1535
>sp|O93796|EF3_CANGA Elongation factor 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138
/ JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TEF3 PE=3 SV=2
Length = 1045
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 64 IHVIATLSNSHNLSP----YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119
+ +A ++N NLSP ++ ++ I DK+ +QA T+ ++S + A
Sbjct: 68 LEAVAHIANEANLSPSVEPFVITLVPEICAKAGDKDKDVQAVASKTLVAISKAINPVAIK 127
Query: 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160
L L+ +L T +V ++A +DAA++ A ++
Sbjct: 128 AYLPHLTKSLETTNKWQEKVSVLAAISALVDAAKEQVALRM 168
>sp|Q6PDI5|ECM29_MOUSE Proteasome-associated protein ECM29 homolog OS=Mus musculus GN=Ecm29
PE=1 SV=3
Length = 1840
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 17/201 (8%)
Query: 58 GVRKECIHVIATLSNS--HNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115
G + C VI +L+ +L+PY K+++++ D+NS +Q +C + L
Sbjct: 1369 GTKGGCASVIVSLTTQCPQDLTPYSGKLMSALLSGLTDRNSVIQKSCAFAMGHLVRTSRD 1428
Query: 116 SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK-----------LGRME 164
S+ +L+ L+ + + + AL + A PD K LG E
Sbjct: 1429 SSTEKLLQKLNGWYMEKDEPVYKTSCALTIHAI--GRYSPDVLKNHAKEVLPLAFLGMHE 1486
Query: 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAE 224
+ E KSE + V +V GS L+ L++ L SQ W + A
Sbjct: 1487 IADEE--KSEKEECNMWTEVWQENVPGSFGGIRLYLQELITITQKALQSQSWKMKAQGAI 1544
Query: 225 ALWRLAVVEKDAVPEFKGKCL 245
A+ ++ VP + G L
Sbjct: 1545 AMASISKQTSSLVPPYLGMIL 1565
>sp|Q6P0Q8|MAST2_HUMAN Microtubule-associated serine/threonine-protein kinase 2 OS=Homo
sapiens GN=MAST2 PE=1 SV=2
Length = 1798
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 244 CLKIFE----SKRFDKMIEAWKQVPDLSEEASPPP--QSLDPSKEDGSDRRYLTESRSSS 297
CL+I + S RF+K+ + +++ L E +PPP +SL KED SD + R S
Sbjct: 836 CLEIRQFSSCSPRFNKVYSSMERLSLLEERRTPPPTKRSLSEEKEDHSDGLAGLKGRDRS 895
Query: 298 ----TKGLELKKRSILASKSTPPDSSFPTTARKR 327
+ + K+ S+ S T DSS P T R+R
Sbjct: 896 WVIGSPEILRKRLSVSESSHTESDSSPPMTVRRR 929
>sp|Q9HPL5|COBQ_HALSA Probable cobyric acid synthase OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=cobQ PE=3 SV=1
Length = 512
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 320 FPTTARKRGFLKKVSPAVLHKVDQKKPSDWRDQISAPSGASLVDAHED 367
F A +RGF V A V+Q P+D DQ + + A+LVDAH D
Sbjct: 455 FGNDAARRGFRDAVFAAA--GVEQPAPADTPDQSPSDAAAALVDAHVD 500
>sp|B0R5X2|COBQ_HALS3 Probable cobyric acid synthase OS=Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1) GN=cobQ PE=3 SV=1
Length = 512
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 320 FPTTARKRGFLKKVSPAVLHKVDQKKPSDWRDQISAPSGASLVDAHED 367
F A +RGF V A V+Q P+D DQ + + A+LVDAH D
Sbjct: 455 FGNDAARRGFRDAVFAAA--GVEQPAPADTPDQSPSDAAAALVDAHVD 500
>sp|Q60592|MAST2_MOUSE Microtubule-associated serine/threonine-protein kinase 2 OS=Mus
musculus GN=Mast2 PE=1 SV=1
Length = 1734
Score = 32.7 bits (73), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 244 CLKIFE----SKRFDKMIEAWKQVPDLSEEASPPP--QSLDPSKEDGSDRRYLTESRSSS 297
CL+I + S RF K+ + +++ L E +PPP +SL KED SD + R S
Sbjct: 777 CLEIRQFSSCSPRFSKVYSSMERLSLLEERRTPPPTKRSLSEEKEDHSDGLAGLKGRDRS 836
Query: 298 ----TKGLELKKRSILASKSTPPDSSFPTTARKR 327
+ + K+ S+ S T DSS P T R R
Sbjct: 837 WVIGSPEILRKRLSVSESSHTESDSSPPMTVRHR 870
>sp|Q55BR7|RPTOR_DICDI Protein raptor homolog OS=Dictyostelium discoideum GN=raptor PE=1
SV=1
Length = 1509
Score = 32.7 bits (73), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 19/158 (12%)
Query: 20 DTYSQAAKELDSIAATVDP----TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHN 75
D + +A L +I P L+ L LS + P VR+ I +A + +
Sbjct: 649 DQRTMSAFVLSTICNNCRPGQNACLIGNLLPICLSQLNDPDPMVRRWMILCMAKMWENFE 708
Query: 76 LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDT 135
+ + K +A + C+ ++ +SP V ASA V + +L+ A +EQ T
Sbjct: 709 EAKWAAI-----------KENAHEKLCL-LLTDVSPEVRASAVVALGELIGGAEGSEQRT 756
Query: 136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS 173
N ++ AL LA I A P K + + L R++ S
Sbjct: 757 NIELNLALTLAV-ITADCSPMVRK--ELVISLSRIVSS 791
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 208,692,452
Number of Sequences: 539616
Number of extensions: 8538934
Number of successful extensions: 20445
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 20400
Number of HSP's gapped (non-prelim): 101
length of query: 594
length of database: 191,569,459
effective HSP length: 123
effective length of query: 471
effective length of database: 125,196,691
effective search space: 58967641461
effective search space used: 58967641461
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)