Query 007670
Match_columns 594
No_of_seqs 139 out of 201
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 13:45:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2171 Karyopherin (importin) 100.0 9.9E-31 2.1E-35 300.0 21.5 266 3-270 292-599 (1075)
2 KOG2023 Nuclear transport rece 99.9 1E-24 2.2E-29 239.3 14.2 225 21-251 371-615 (885)
3 KOG1241 Karyopherin (importin) 99.3 3.7E-11 8.1E-16 135.2 18.9 250 6-255 321-696 (859)
4 COG5215 KAP95 Karyopherin (imp 99.2 1.1E-09 2.3E-14 120.7 18.7 242 8-249 325-686 (858)
5 KOG2171 Karyopherin (importin) 99.2 6.6E-10 1.4E-14 129.8 18.1 235 21-255 364-619 (1075)
6 PF12348 CLASP_N: CLASP N term 98.9 3.9E-08 8.5E-13 96.9 14.1 189 41-235 5-210 (228)
7 PRK09687 putative lyase; Provi 98.8 1E-07 2.2E-12 98.9 16.4 196 5-230 20-220 (280)
8 PRK09687 putative lyase; Provi 98.8 3.4E-07 7.4E-12 95.0 18.7 150 53-231 101-250 (280)
9 KOG1242 Protein containing ada 98.8 2.3E-07 5E-12 103.5 17.4 228 5-237 214-451 (569)
10 KOG0213 Splicing factor 3b, su 98.7 1.5E-06 3.3E-11 98.6 19.9 212 21-234 732-957 (1172)
11 PRK13800 putative oxidoreducta 98.6 1.5E-06 3.2E-11 103.1 19.5 117 87-230 719-835 (897)
12 PF01602 Adaptin_N: Adaptin N 98.6 1E-06 2.2E-11 96.4 15.0 185 37-233 108-298 (526)
13 PF12755 Vac14_Fab1_bd: Vacuol 98.5 4.9E-07 1.1E-11 80.2 9.5 89 59-149 2-95 (97)
14 KOG2023 Nuclear transport rece 98.5 1.4E-06 2.9E-11 98.1 15.0 254 7-264 13-284 (885)
15 PF13513 HEAT_EZ: HEAT-like re 98.5 7.1E-08 1.5E-12 75.5 3.0 53 57-109 1-55 (55)
16 PRK13800 putative oxidoreducta 98.5 2.2E-06 4.7E-11 101.6 16.2 121 85-229 745-865 (897)
17 KOG1241 Karyopherin (importin) 98.4 2.5E-06 5.3E-11 97.2 14.5 208 41-249 496-729 (859)
18 KOG1242 Protein containing ada 98.4 1.6E-05 3.5E-10 89.1 19.6 227 21-251 150-423 (569)
19 COG5215 KAP95 Karyopherin (imp 98.4 2.5E-05 5.4E-10 87.1 19.3 239 10-249 411-729 (858)
20 PF12348 CLASP_N: CLASP N term 98.3 1.6E-05 3.4E-10 78.5 15.6 172 19-192 21-207 (228)
21 PF10508 Proteasom_PSMB: Prote 98.3 2.5E-05 5.5E-10 87.2 18.8 251 10-264 44-365 (503)
22 KOG0212 Uncharacterized conser 98.3 2.9E-05 6.2E-10 86.5 17.6 256 7-264 124-405 (675)
23 PF01602 Adaptin_N: Adaptin N 98.2 1.2E-05 2.6E-10 88.0 13.8 235 21-266 58-297 (526)
24 KOG0212 Uncharacterized conser 98.2 3E-05 6.6E-10 86.3 15.9 212 20-233 15-239 (675)
25 PLN03200 cellulose synthase-in 98.2 4.6E-05 1E-09 95.8 19.3 227 15-255 414-667 (2102)
26 KOG1240 Protein kinase contain 98.2 1.2E-05 2.6E-10 95.1 13.2 192 41-234 420-649 (1431)
27 PLN03200 cellulose synthase-in 98.2 5.1E-05 1.1E-09 95.5 18.9 232 17-255 542-796 (2102)
28 KOG1820 Microtubule-associated 98.1 0.0002 4.3E-09 84.1 21.3 199 37-242 246-455 (815)
29 KOG0166 Karyopherin (importin) 98.1 3E-05 6.5E-10 86.4 13.6 242 7-255 112-380 (514)
30 PF10508 Proteasom_PSMB: Prote 98.1 0.00017 3.8E-09 80.6 19.8 215 4-231 3-231 (503)
31 PF13646 HEAT_2: HEAT repeats; 98.1 1.8E-05 3.9E-10 66.2 9.0 88 41-146 1-88 (88)
32 KOG1059 Vesicle coat complex A 98.1 2.9E-05 6.2E-10 88.4 12.9 185 52-249 153-346 (877)
33 PF12460 MMS19_C: RNAPII trans 98.1 0.00028 6E-09 76.9 20.0 204 3-209 188-413 (415)
34 KOG1248 Uncharacterized conser 98.0 0.0011 2.3E-08 79.3 23.0 227 23-249 631-875 (1176)
35 KOG1824 TATA-binding protein-i 98.0 0.00053 1.1E-08 80.2 19.9 245 19-267 102-408 (1233)
36 KOG0915 Uncharacterized conser 97.9 0.00028 6E-09 85.6 17.5 215 26-245 942-1174(1702)
37 KOG0166 Karyopherin (importin) 97.9 0.00026 5.6E-09 79.1 15.4 209 17-231 78-308 (514)
38 KOG2032 Uncharacterized conser 97.9 0.0004 8.6E-09 76.7 16.4 197 14-211 188-393 (533)
39 PF12460 MMS19_C: RNAPII trans 97.8 0.00098 2.1E-08 72.6 18.9 223 23-248 165-411 (415)
40 cd00020 ARM Armadillo/beta-cat 97.8 5.2E-05 1.1E-09 65.6 7.2 106 40-150 8-120 (120)
41 COG1413 FOG: HEAT repeat [Ener 97.8 0.00064 1.4E-08 70.9 16.0 58 167-231 185-242 (335)
42 COG5181 HSH155 U2 snRNP splice 97.8 0.00037 7.9E-09 78.6 14.0 219 12-234 526-762 (975)
43 PF12717 Cnd1: non-SMC mitotic 97.7 0.00043 9.4E-09 67.0 12.8 137 56-213 1-140 (178)
44 KOG1991 Nuclear transport rece 97.7 0.0013 2.9E-08 77.3 17.7 184 24-210 390-593 (1010)
45 PF13646 HEAT_2: HEAT repeats; 97.7 0.00035 7.5E-09 58.4 9.6 86 84-187 1-88 (88)
46 KOG1824 TATA-binding protein-i 97.7 0.0014 3.1E-08 76.8 17.4 244 21-266 451-723 (1233)
47 cd00020 ARM Armadillo/beta-cat 97.7 0.00014 3.1E-09 62.9 7.4 109 121-230 8-119 (120)
48 PF13251 DUF4042: Domain of un 97.6 0.0006 1.3E-08 67.2 11.6 106 89-194 47-177 (182)
49 PTZ00429 beta-adaptin; Provisi 97.5 0.011 2.3E-07 69.6 21.3 194 38-240 135-335 (746)
50 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.00033 7.1E-09 62.2 6.9 82 22-103 3-89 (97)
51 COG1413 FOG: HEAT repeat [Ener 97.4 0.0049 1.1E-07 64.3 16.6 161 31-227 97-269 (335)
52 PF05004 IFRD: Interferon-rela 97.4 0.013 2.8E-07 62.1 19.6 209 4-212 40-283 (309)
53 PF05004 IFRD: Interferon-rela 97.4 0.0097 2.1E-07 63.0 18.1 178 56-234 56-260 (309)
54 PF02985 HEAT: HEAT repeat; I 97.4 0.0002 4.3E-09 50.4 3.6 31 83-113 1-31 (31)
55 TIGR02270 conserved hypothetic 97.4 0.0044 9.6E-08 68.1 15.4 162 29-230 45-206 (410)
56 TIGR02270 conserved hypothetic 97.3 0.0082 1.8E-07 66.0 16.7 187 41-266 88-297 (410)
57 PTZ00429 beta-adaptin; Provisi 97.3 0.014 3E-07 68.7 19.2 168 13-192 38-209 (746)
58 KOG2956 CLIP-associating prote 97.3 0.0048 1E-07 68.1 14.3 190 9-203 288-491 (516)
59 COG5064 SRP1 Karyopherin (impo 97.2 0.00092 2E-08 71.4 8.2 188 37-231 155-356 (526)
60 KOG0915 Uncharacterized conser 97.2 0.0073 1.6E-07 73.9 16.3 193 41-233 1037-1308(1702)
61 PF12717 Cnd1: non-SMC mitotic 97.2 0.0093 2E-07 57.8 14.1 145 25-171 8-159 (178)
62 KOG1248 Uncharacterized conser 97.2 0.019 4.1E-07 69.1 19.0 237 18-255 667-924 (1176)
63 KOG2956 CLIP-associating prote 97.1 0.015 3.3E-07 64.3 16.1 205 32-244 273-491 (516)
64 KOG4224 Armadillo repeat prote 97.1 0.0041 9E-08 67.0 11.1 219 8-231 211-446 (550)
65 KOG1240 Protein kinase contain 97.0 0.0038 8.3E-08 74.9 11.3 160 52-213 587-746 (1431)
66 PF04826 Arm_2: Armadillo-like 97.0 0.0084 1.8E-07 61.9 12.0 150 36-190 9-162 (254)
67 KOG2933 Uncharacterized conser 96.8 0.0091 2E-07 63.2 11.1 172 41-220 86-266 (334)
68 COG5181 HSH155 U2 snRNP splice 96.8 0.017 3.8E-07 65.7 13.5 195 30-234 306-553 (975)
69 PF14500 MMS19_N: Dos2-interac 96.7 0.07 1.5E-06 55.4 16.1 49 200-248 206-255 (262)
70 KOG0213 Splicing factor 3b, su 96.6 0.059 1.3E-06 62.6 16.3 152 31-192 502-666 (1172)
71 PF12719 Cnd3: Nuclear condens 96.6 0.079 1.7E-06 55.4 15.8 123 24-151 6-144 (298)
72 KOG1943 Beta-tubulin folding c 96.5 0.15 3.3E-06 61.2 18.9 214 8-234 342-576 (1133)
73 PF13513 HEAT_EZ: HEAT-like re 96.4 0.002 4.3E-08 50.3 2.4 53 177-229 2-55 (55)
74 KOG0211 Protein phosphatase 2A 96.4 0.13 2.8E-06 60.7 17.8 259 3-266 154-421 (759)
75 PF02985 HEAT: HEAT repeat; I 96.4 0.0062 1.4E-07 42.8 4.3 30 203-232 1-30 (31)
76 PF08167 RIX1: rRNA processing 96.3 0.079 1.7E-06 51.1 12.8 129 40-171 22-164 (165)
77 PF10274 ParcG: Parkin co-regu 96.1 0.028 6.1E-07 55.6 9.1 113 121-234 39-167 (183)
78 KOG1967 DNA repair/transcripti 96.1 0.16 3.5E-06 60.2 16.5 210 17-230 786-1023(1030)
79 KOG2137 Protein kinase [Signal 96.1 0.31 6.8E-06 56.6 18.1 158 79-255 386-548 (700)
80 KOG0211 Protein phosphatase 2A 95.9 0.18 3.9E-06 59.5 15.8 193 36-231 429-625 (759)
81 PF11865 DUF3385: Domain of un 95.9 0.055 1.2E-06 52.1 9.5 145 41-190 8-156 (160)
82 KOG2274 Predicted importin 9 [ 95.8 0.47 1E-05 56.4 18.2 190 41-231 488-689 (1005)
83 PF10363 DUF2435: Protein of u 95.6 0.052 1.1E-06 48.0 7.8 79 47-129 7-86 (92)
84 KOG1020 Sister chromatid cohes 95.4 0.59 1.3E-05 58.1 17.6 132 17-154 792-925 (1692)
85 KOG4224 Armadillo repeat prote 95.3 0.69 1.5E-05 50.6 16.1 210 13-231 175-405 (550)
86 KOG4653 Uncharacterized conser 95.1 1.7 3.7E-05 51.8 19.6 225 9-240 729-974 (982)
87 KOG4653 Uncharacterized conser 95.1 0.69 1.5E-05 54.9 16.5 186 51-240 735-927 (982)
88 KOG4535 HEAT and armadillo rep 94.9 0.73 1.6E-05 51.8 15.3 256 5-261 107-456 (728)
89 KOG2160 Armadillo/beta-catenin 94.9 1.4 3.1E-05 47.6 17.2 173 9-190 86-281 (342)
90 KOG1991 Nuclear transport rece 94.8 1.7 3.7E-05 52.3 18.8 165 24-190 481-670 (1010)
91 cd08050 TAF6 TATA Binding Prot 94.7 0.28 6.1E-06 52.8 11.4 116 121-246 179-312 (343)
92 smart00638 LPD_N Lipoprotein N 94.6 0.49 1.1E-05 53.6 13.7 183 21-223 372-570 (574)
93 PF04826 Arm_2: Armadillo-like 94.6 0.5 1.1E-05 49.0 12.5 142 87-231 17-163 (254)
94 PF08064 UME: UME (NUC010) dom 94.5 0.19 4.1E-06 45.3 8.2 89 158-248 7-101 (107)
95 COG5240 SEC21 Vesicle coat com 94.5 0.9 1.9E-05 52.1 14.9 210 41-261 262-473 (898)
96 KOG1992 Nuclear export recepto 94.3 1.9 4E-05 51.2 17.3 216 17-233 373-670 (960)
97 PF08064 UME: UME (NUC010) dom 94.3 0.19 4.2E-06 45.2 7.7 73 55-129 27-101 (107)
98 PF08167 RIX1: rRNA processing 94.3 1.7 3.8E-05 41.8 14.8 133 77-211 20-164 (165)
99 KOG1943 Beta-tubulin folding c 94.2 0.96 2.1E-05 54.7 15.2 149 78-229 337-498 (1133)
100 COG5656 SXM1 Importin, protein 94.2 3.8 8.3E-05 48.3 19.3 165 41-209 406-587 (970)
101 PF13251 DUF4042: Domain of un 94.1 0.43 9.4E-06 47.2 10.4 136 98-233 2-176 (182)
102 smart00802 UME Domain in UVSB 94.0 0.21 4.6E-06 45.4 7.4 56 58-115 30-87 (107)
103 KOG1058 Vesicle coat complex C 94.0 3.5 7.5E-05 48.7 18.5 229 37-270 128-482 (948)
104 KOG2160 Armadillo/beta-catenin 94.0 1.5 3.3E-05 47.4 14.9 190 41-232 78-283 (342)
105 PF12074 DUF3554: Domain of un 94.0 3.6 7.7E-05 43.7 17.7 173 58-236 38-240 (339)
106 COG5095 TAF6 Transcription ini 93.9 0.31 6.8E-06 51.9 9.5 61 181-241 255-329 (450)
107 KOG1062 Vesicle coat complex A 93.9 0.8 1.7E-05 54.0 13.4 212 32-251 131-397 (866)
108 KOG0803 Predicted E3 ubiquitin 93.9 0.88 1.9E-05 56.7 14.5 187 5-192 39-264 (1312)
109 KOG2259 Uncharacterized conser 93.7 1.2 2.5E-05 51.8 14.0 183 43-232 198-440 (823)
110 KOG1967 DNA repair/transcripti 93.7 0.54 1.2E-05 56.0 11.7 124 141-264 887-1026(1030)
111 PF12765 Cohesin_HEAT: HEAT re 93.4 0.08 1.7E-06 40.2 3.0 27 80-106 16-42 (42)
112 KOG1020 Sister chromatid cohes 93.4 4.9 0.00011 50.6 19.2 106 4-109 831-958 (1692)
113 KOG1060 Vesicle coat complex A 93.2 2.3 5E-05 50.3 15.5 34 201-234 391-424 (968)
114 COG5064 SRP1 Karyopherin (impo 93.1 0.4 8.7E-06 51.9 8.8 207 21-231 87-314 (526)
115 PF12530 DUF3730: Protein of u 93.1 7.5 0.00016 39.5 17.6 204 13-225 9-233 (234)
116 KOG2032 Uncharacterized conser 92.8 2 4.4E-05 48.4 13.9 230 5-255 256-514 (533)
117 smart00802 UME Domain in UVSB 92.8 0.43 9.4E-06 43.4 7.3 89 158-248 7-101 (107)
118 PF01347 Vitellogenin_N: Lipop 92.8 1 2.2E-05 51.2 12.1 181 21-223 410-614 (618)
119 PF03378 CAS_CSE1: CAS/CSE pro 92.7 2.7 5.8E-05 46.9 14.8 209 41-255 28-258 (435)
120 COG5096 Vesicle coat complex, 92.5 2.1 4.6E-05 50.7 14.3 146 29-185 40-189 (757)
121 PF05804 KAP: Kinesin-associat 92.2 2 4.4E-05 50.7 13.7 176 41-232 333-518 (708)
122 PF05536 Neurochondrin: Neuroc 92.1 21 0.00045 41.1 21.4 190 42-234 52-264 (543)
123 KOG4535 HEAT and armadillo rep 91.8 0.64 1.4E-05 52.2 8.6 196 36-234 384-606 (728)
124 PF08506 Cse1: Cse1; InterPro 91.8 0.43 9.2E-06 52.0 7.2 128 17-145 222-370 (370)
125 KOG1062 Vesicle coat complex A 91.8 6.7 0.00015 46.6 16.9 206 36-249 98-360 (866)
126 PF11865 DUF3385: Domain of un 91.5 2.6 5.6E-05 40.6 11.4 146 81-234 9-160 (160)
127 KOG2549 Transcription initiati 91.5 2 4.3E-05 49.0 12.0 116 121-246 208-342 (576)
128 COG5096 Vesicle coat complex, 91.3 18 0.00039 43.2 19.9 145 18-171 68-213 (757)
129 KOG2022 Nuclear transport rece 91.2 9.8 0.00021 45.8 17.5 246 21-269 439-723 (982)
130 KOG0392 SNF2 family DNA-depend 91.1 1.2 2.7E-05 54.7 10.4 167 21-192 749-926 (1549)
131 KOG2022 Nuclear transport rece 91.0 18 0.00038 43.7 19.4 257 5-269 505-830 (982)
132 PF12231 Rif1_N: Rap1-interact 90.6 29 0.00062 37.8 21.5 106 158-263 228-343 (372)
133 PF05918 API5: Apoptosis inhib 90.5 13 0.00027 43.0 17.3 91 17-113 34-127 (556)
134 KOG2274 Predicted importin 9 [ 90.4 13 0.00028 44.9 17.6 231 5-240 2-268 (1005)
135 PF10274 ParcG: Parkin co-regu 90.3 0.92 2E-05 45.1 7.3 89 158-249 38-130 (183)
136 KOG2025 Chromosome condensatio 90.3 6 0.00013 46.6 14.6 194 29-229 66-292 (892)
137 KOG1517 Guanine nucleotide bin 90.3 16 0.00034 45.0 18.3 96 98-193 573-673 (1387)
138 KOG1993 Nuclear transport rece 90.3 6.4 0.00014 46.9 14.8 208 58-265 412-688 (978)
139 PF01603 B56: Protein phosphat 90.2 13 0.00028 41.1 16.8 143 121-265 252-406 (409)
140 KOG1061 Vesicle coat complex A 90.1 14 0.00031 43.7 17.5 177 41-234 51-231 (734)
141 KOG2062 26S proteasome regulat 89.9 1.2 2.5E-05 52.4 8.6 84 55-148 567-651 (929)
142 PF12830 Nipped-B_C: Sister ch 89.8 7.3 0.00016 38.3 13.2 135 41-192 6-141 (187)
143 PF12074 DUF3554: Domain of un 89.6 22 0.00048 37.7 17.6 201 7-212 21-254 (339)
144 KOG1837 Uncharacterized conser 89.6 14 0.00029 47.0 17.6 212 21-240 1365-1620(1621)
145 PF10521 DUF2454: Protein of u 89.6 5.7 0.00012 41.5 12.9 141 75-215 112-278 (282)
146 PF08389 Xpo1: Exportin 1-like 89.3 1.6 3.4E-05 39.6 7.5 114 28-145 11-148 (148)
147 PF00514 Arm: Armadillo/beta-c 89.1 0.57 1.2E-05 34.5 3.7 29 83-111 13-41 (41)
148 KOG1820 Microtubule-associated 88.9 13 0.00029 44.7 16.6 137 55-195 307-447 (815)
149 KOG2062 26S proteasome regulat 88.8 5.4 0.00012 47.1 12.8 172 41-229 520-694 (929)
150 PF12397 U3snoRNP10: U3 small 88.8 4.1 8.9E-05 36.9 9.8 73 78-152 2-76 (121)
151 KOG1078 Vesicle coat complex C 88.7 13 0.00028 44.3 15.7 198 41-255 243-445 (865)
152 PF01347 Vitellogenin_N: Lipop 88.6 7.4 0.00016 44.4 14.0 206 26-255 349-574 (618)
153 KOG2933 Uncharacterized conser 88.5 2.7 5.8E-05 45.1 9.5 141 8-153 89-237 (334)
154 COG5116 RPN2 26S proteasome re 88.0 3.1 6.8E-05 47.8 10.1 112 52-174 561-674 (926)
155 KOG0567 HEAT repeat-containing 87.9 29 0.00063 36.8 16.3 63 38-110 66-128 (289)
156 KOG2259 Uncharacterized conser 87.7 11 0.00024 44.2 14.2 54 58-111 173-227 (823)
157 PF08161 NUC173: NUC173 domain 87.6 4.5 9.8E-05 40.5 10.1 83 133-215 12-110 (198)
158 KOG4413 26S proteasome regulat 87.2 22 0.00047 39.0 15.3 176 56-239 53-252 (524)
159 PF14631 FancD2: Fanconi anaem 87.2 12 0.00026 47.8 15.5 208 38-260 430-651 (1426)
160 PF08767 CRM1_C: CRM1 C termin 86.1 18 0.0004 38.6 14.3 154 41-195 69-251 (319)
161 PF03224 V-ATPase_H_N: V-ATPas 86.0 2.5 5.5E-05 44.4 7.8 176 5-190 56-268 (312)
162 KOG4413 26S proteasome regulat 85.9 60 0.0013 35.7 18.0 247 19-266 57-378 (524)
163 KOG1060 Vesicle coat complex A 85.6 18 0.00038 43.4 14.6 101 84-190 145-245 (968)
164 KOG2137 Protein kinase [Signal 85.2 12 0.00027 44.0 13.2 126 9-138 354-484 (700)
165 PF10363 DUF2435: Protein of u 85.1 7.8 0.00017 34.3 9.2 83 7-94 3-89 (92)
166 KOG4500 Rho/Rac GTPase guanine 85.1 31 0.00067 39.0 15.5 189 42-232 314-520 (604)
167 KOG2081 Nuclear transport regu 85.0 17 0.00037 41.7 13.9 161 21-190 368-535 (559)
168 PF08623 TIP120: TATA-binding 84.5 1.9 4E-05 42.4 5.5 96 75-172 2-116 (169)
169 smart00638 LPD_N Lipoprotein N 84.3 53 0.0011 37.4 17.8 205 25-255 312-530 (574)
170 PF10350 DUF2428: Putative dea 84.3 16 0.00035 37.7 12.5 159 59-217 63-255 (255)
171 KOG1243 Protein kinase [Genera 83.9 1.9 4.2E-05 50.2 6.1 71 4-74 326-400 (690)
172 PF10521 DUF2454: Protein of u 83.7 45 0.00098 34.8 15.7 128 121-249 120-271 (282)
173 KOG2081 Nuclear transport regu 83.3 42 0.00091 38.7 16.0 159 3-169 387-556 (559)
174 PF05327 RRN3: RNA polymerase 83.3 22 0.00047 41.0 14.2 143 23-170 54-213 (563)
175 PF11864 DUF3384: Domain of un 83.1 85 0.0018 35.2 18.6 103 5-113 177-287 (464)
176 KOG1993 Nuclear transport rece 82.9 51 0.0011 39.7 16.8 205 3-212 521-750 (978)
177 COG5240 SEC21 Vesicle coat com 82.2 37 0.0008 39.7 14.9 207 37-255 297-538 (898)
178 PF08389 Xpo1: Exportin 1-like 82.0 6.4 0.00014 35.6 7.7 126 97-226 3-148 (148)
179 KOG1077 Vesicle coat complex A 81.8 1.3E+02 0.0027 36.2 22.0 83 27-113 311-400 (938)
180 KOG2149 Uncharacterized conser 81.6 10 0.00022 41.9 10.2 112 41-157 60-177 (393)
181 PF12054 DUF3535: Domain of un 81.5 4.2 9.1E-05 45.4 7.5 107 121-235 313-428 (441)
182 PF14500 MMS19_N: Dos2-interac 81.3 68 0.0015 33.5 15.8 187 13-208 48-256 (262)
183 KOG0392 SNF2 family DNA-depend 81.1 28 0.0006 43.7 14.3 104 10-113 127-239 (1549)
184 PF14664 RICTOR_N: Rapamycin-i 81.0 83 0.0018 34.5 17.0 207 19-232 39-270 (371)
185 PF12719 Cnd3: Nuclear condens 80.6 41 0.0009 35.2 14.1 115 79-195 23-147 (298)
186 PF03378 CAS_CSE1: CAS/CSE pro 80.6 37 0.00081 38.0 14.4 227 3-232 25-273 (435)
187 KOG1851 Uncharacterized conser 80.1 45 0.00097 42.8 15.8 151 21-171 1503-1659(1710)
188 KOG1059 Vesicle coat complex A 79.8 1E+02 0.0022 37.0 17.6 199 41-255 297-509 (877)
189 KOG0414 Chromosome condensatio 79.8 9.9 0.00021 47.0 10.1 168 39-215 914-1105(1251)
190 KOG1243 Protein kinase [Genera 79.0 6.6 0.00014 46.0 8.1 192 21-227 307-511 (690)
191 PF11701 UNC45-central: Myosin 79.0 4.5 9.7E-05 38.7 5.8 147 79-228 4-156 (157)
192 PF11698 V-ATPase_H_C: V-ATPas 78.9 6.4 0.00014 36.7 6.6 69 82-150 43-115 (119)
193 KOG1293 Proteins containing ar 78.4 32 0.00069 40.4 13.1 143 6-152 378-535 (678)
194 KOG2025 Chromosome condensatio 77.9 1.7E+02 0.0036 35.3 19.1 180 41-228 42-256 (892)
195 KOG0168 Putative ubiquitin fus 77.7 1E+02 0.0022 37.7 17.0 157 9-172 216-390 (1051)
196 PF03224 V-ATPase_H_N: V-ATPas 77.1 12 0.00025 39.5 8.8 127 41-171 57-200 (312)
197 PF04510 DUF577: Family of unk 76.8 69 0.0015 31.9 13.3 120 3-129 2-135 (174)
198 KOG0168 Putative ubiquitin fus 76.6 65 0.0014 39.2 15.1 176 8-190 171-363 (1051)
199 COG5098 Chromosome condensatio 75.9 29 0.00063 41.2 11.9 160 55-226 908-1088(1128)
200 smart00543 MIF4G Middle domain 75.5 72 0.0015 30.2 13.1 158 8-173 3-176 (200)
201 KOG1822 Uncharacterized conser 75.5 1.2E+02 0.0026 40.0 17.7 198 36-233 868-1090(2067)
202 KOG0891 DNA-dependent protein 75.2 70 0.0015 43.0 16.3 239 18-264 106-371 (2341)
203 PF11919 DUF3437: Domain of un 74.6 5.5 0.00012 35.3 4.7 52 58-110 4-57 (90)
204 KOG0567 HEAT repeat-containing 74.6 9.3 0.0002 40.4 7.0 58 83-148 219-278 (289)
205 cd03569 VHS_Hrs_Vps27p VHS dom 74.4 63 0.0014 30.6 12.1 71 121-192 42-115 (142)
206 KOG2973 Uncharacterized conser 74.3 11 0.00024 40.7 7.6 88 47-136 7-98 (353)
207 KOG2842 Interferon-related pro 74.3 83 0.0018 35.1 14.3 194 57-251 74-297 (427)
208 KOG1061 Vesicle coat complex A 73.8 18 0.0004 42.8 9.9 116 41-156 119-234 (734)
209 PF13001 Ecm29: Proteasome sta 73.6 94 0.002 35.3 15.3 173 21-195 253-447 (501)
210 KOG4199 Uncharacterized conser 72.7 55 0.0012 36.1 12.3 157 17-175 254-428 (461)
211 PF08569 Mo25: Mo25-like; Int 72.4 75 0.0016 34.5 13.6 174 52-231 85-283 (335)
212 cd03568 VHS_STAM VHS domain fa 71.9 28 0.0006 33.2 9.1 72 121-193 38-112 (144)
213 PF03130 HEAT_PBS: PBS lyase H 71.8 5.7 0.00012 27.1 3.3 25 98-129 1-25 (27)
214 smart00185 ARM Armadillo/beta- 71.8 4.8 0.0001 28.5 3.1 29 83-111 13-41 (41)
215 KOG2021 Nuclear mRNA export fa 71.5 47 0.001 39.9 12.2 217 20-255 505-751 (980)
216 PF12333 Ipi1_N: Rix1 complex 71.2 6.5 0.00014 35.2 4.4 44 131-174 21-65 (102)
217 cd03561 VHS VHS domain family; 70.8 84 0.0018 29.1 11.9 85 121-206 38-130 (133)
218 PF12765 Cohesin_HEAT: HEAT re 70.5 7.9 0.00017 29.4 4.1 41 185-226 2-42 (42)
219 PF12231 Rif1_N: Rap1-interact 70.4 1.6E+02 0.0034 32.1 15.7 156 17-190 187-351 (372)
220 KOG0891 DNA-dependent protein 70.2 51 0.0011 44.2 13.5 229 12-246 450-692 (2341)
221 smart00185 ARM Armadillo/beta- 70.2 5.9 0.00013 28.1 3.3 28 203-230 13-40 (41)
222 cd08050 TAF6 TATA Binding Prot 69.8 64 0.0014 34.9 12.4 148 41-193 176-339 (343)
223 smart00288 VHS Domain present 69.8 45 0.00097 31.1 9.9 71 121-192 38-112 (133)
224 KOG0946 ER-Golgi vesicle-tethe 68.7 44 0.00096 40.2 11.4 149 80-231 20-195 (970)
225 PF00514 Arm: Armadillo/beta-c 68.7 9.5 0.00021 27.9 4.1 28 203-230 13-40 (41)
226 COG5116 RPN2 26S proteasome re 68.5 42 0.0009 39.2 10.8 154 86-255 520-674 (926)
227 PRK14707 hypothetical protein; 68.1 4.4E+02 0.0094 35.8 21.6 135 8-151 545-698 (2710)
228 COG5218 YCG1 Chromosome conden 68.0 60 0.0013 38.1 11.9 73 41-113 89-163 (885)
229 PF04388 Hamartin: Hamartin pr 67.8 62 0.0014 38.3 12.7 127 32-171 28-161 (668)
230 PF11935 DUF3453: Domain of un 67.8 1.1E+02 0.0024 31.3 13.1 179 54-249 4-210 (239)
231 PF08506 Cse1: Cse1; InterPro 67.4 1.5E+02 0.0033 32.5 14.8 127 97-226 226-370 (370)
232 COG5656 SXM1 Importin, protein 66.1 3.1E+02 0.0067 33.4 20.3 208 25-234 480-714 (970)
233 cd00256 VATPase_H VATPase_H, r 65.8 1.4E+02 0.0029 33.8 14.2 180 4-191 53-258 (429)
234 KOG2021 Nuclear mRNA export fa 65.4 1.5E+02 0.0032 36.0 14.6 176 78-257 188-397 (980)
235 PF00790 VHS: VHS domain; Int 65.2 40 0.00086 31.5 8.6 72 121-193 43-120 (140)
236 PF11698 V-ATPase_H_C: V-ATPas 65.2 7.3 0.00016 36.3 3.6 68 4-71 43-114 (119)
237 PF12530 DUF3730: Protein of u 65.2 1.6E+02 0.0036 29.9 17.6 166 52-232 10-186 (234)
238 PF04118 Dopey_N: Dopey, N-ter 64.7 80 0.0017 33.9 11.7 138 5-147 55-198 (307)
239 KOG1525 Sister chromatid cohes 64.5 60 0.0013 41.1 12.1 200 21-231 201-405 (1266)
240 PF08767 CRM1_C: CRM1 C termin 63.9 1.6E+02 0.0034 31.5 13.9 94 21-115 92-198 (319)
241 PF05804 KAP: Kinesin-associat 63.4 2.2E+02 0.0049 34.1 16.0 160 21-191 265-441 (708)
242 PF12397 U3snoRNP10: U3 small 63.1 1E+02 0.0022 27.8 10.6 74 158-233 2-76 (121)
243 PF08623 TIP120: TATA-binding 62.9 80 0.0017 31.2 10.4 73 57-130 41-116 (169)
244 cd03567 VHS_GGA VHS domain fam 62.7 66 0.0014 30.6 9.6 84 122-207 40-131 (139)
245 PLN03076 ARF guanine nucleotid 62.1 2.1E+02 0.0044 38.0 16.4 186 28-213 1071-1280(1780)
246 KOG1058 Vesicle coat complex C 61.0 1.8E+02 0.0039 35.2 14.3 164 7-178 282-453 (948)
247 PF02854 MIF4G: MIF4G domain; 60.1 69 0.0015 30.2 9.4 44 7-51 2-45 (209)
248 PF12054 DUF3535: Domain of un 59.7 3E+02 0.0064 31.0 19.0 93 21-113 103-210 (441)
249 KOG0946 ER-Golgi vesicle-tethe 59.6 1.6E+02 0.0036 35.7 13.7 186 45-231 124-346 (970)
250 KOG1851 Uncharacterized conser 59.4 3.9E+02 0.0085 35.0 17.4 165 67-240 1506-1687(1710)
251 PF04003 Utp12: Dip2/Utp12 Fam 59.0 25 0.00053 31.0 5.7 84 26-109 15-103 (110)
252 PRK09169 hypothetical protein; 58.5 3.2E+02 0.007 37.0 17.0 160 7-174 502-683 (2316)
253 PF08161 NUC173: NUC173 domain 57.9 21 0.00045 35.9 5.6 70 165-234 3-73 (198)
254 PF12830 Nipped-B_C: Sister ch 57.2 1.7E+02 0.0036 28.8 11.7 71 80-152 6-76 (187)
255 PF14668 RICTOR_V: Rapamycin-i 56.8 17 0.00037 31.1 4.1 55 59-113 3-60 (73)
256 COG5095 TAF6 Transcription ini 56.2 50 0.0011 35.8 8.2 74 91-171 207-286 (450)
257 PF07571 DUF1546: Protein of u 56.0 18 0.0004 31.8 4.3 35 213-247 17-51 (92)
258 KOG3961 Uncharacterized conser 55.8 59 0.0013 33.7 8.3 91 121-212 115-209 (262)
259 KOG1822 Uncharacterized conser 55.6 3.3E+02 0.0072 36.2 16.2 194 19-213 791-1011(2067)
260 KOG3961 Uncharacterized conser 54.7 71 0.0015 33.2 8.7 96 148-250 106-206 (262)
261 KOG0413 Uncharacterized conser 54.2 47 0.001 40.9 8.3 103 41-151 970-1074(1529)
262 KOG1525 Sister chromatid cohes 54.0 1E+02 0.0023 39.1 11.7 173 37-219 253-441 (1266)
263 smart00567 EZ_HEAT E-Z type HE 53.8 20 0.00044 24.5 3.4 26 97-129 2-27 (30)
264 PF11919 DUF3437: Domain of un 53.7 20 0.00044 31.7 4.2 36 139-174 7-42 (90)
265 cd03572 ENTH_epsin_related ENT 52.1 71 0.0015 29.9 7.7 90 21-111 17-119 (122)
266 KOG2549 Transcription initiati 51.7 2.8E+02 0.0061 32.4 13.6 97 75-171 281-392 (576)
267 KOG0413 Uncharacterized conser 51.6 99 0.0021 38.3 10.4 143 59-210 947-1094(1529)
268 cd03565 VHS_Tom1 VHS domain fa 51.6 1.2E+02 0.0025 28.8 9.3 85 123-207 41-133 (141)
269 COG5098 Chromosome condensatio 51.0 82 0.0018 37.7 9.4 112 4-118 295-419 (1128)
270 PF12783 Sec7_N: Guanine nucle 50.9 59 0.0013 31.0 7.3 93 20-112 37-147 (168)
271 KOG1517 Guanine nucleotide bin 50.2 1E+02 0.0022 38.5 10.2 97 55-152 569-673 (1387)
272 KOG1949 Uncharacterized conser 49.6 3.8E+02 0.0081 32.6 14.3 139 90-231 138-331 (1005)
273 KOG1949 Uncharacterized conser 49.3 1.1E+02 0.0024 36.8 10.1 142 46-189 177-329 (1005)
274 KOG1077 Vesicle coat complex A 49.1 5.7E+02 0.012 31.1 16.1 252 5-266 109-399 (938)
275 PF10350 DUF2428: Putative dea 48.3 1.5E+02 0.0033 30.6 10.3 130 121-250 97-248 (255)
276 PF13001 Ecm29: Proteasome sta 48.1 97 0.0021 35.2 9.6 98 54-152 385-486 (501)
277 PF08713 DNA_alkylation: DNA a 46.5 17 0.00036 35.5 2.8 77 81-161 119-195 (213)
278 KOG4524 Uncharacterized conser 45.6 1.3E+02 0.0029 37.0 10.3 92 80-172 801-899 (1014)
279 PF11701 UNC45-central: Myosin 45.5 91 0.002 29.8 7.6 66 82-147 86-156 (157)
280 KOG1078 Vesicle coat complex C 45.0 1.2E+02 0.0026 36.6 9.7 124 22-150 409-532 (865)
281 KOG1992 Nuclear export recepto 44.5 4.2E+02 0.009 32.6 13.9 193 33-230 488-704 (960)
282 PF11864 DUF3384: Domain of un 43.0 5.3E+02 0.011 29.0 18.9 207 23-231 8-244 (464)
283 PF02465 FliD_N: Flagellar hoo 42.4 86 0.0019 27.4 6.4 54 435-488 4-57 (99)
284 COG5314 Conjugal transfer/entr 42.0 71 0.0015 33.3 6.5 60 437-497 53-112 (252)
285 PLN03076 ARF guanine nucleotid 41.7 1E+03 0.022 31.9 22.0 189 53-245 1147-1391(1780)
286 PF08713 DNA_alkylation: DNA a 41.1 1.1E+02 0.0025 29.6 7.7 68 42-113 119-186 (213)
287 PF06685 DUF1186: Protein of u 40.5 4.6E+02 0.0099 27.5 12.7 89 75-173 96-196 (249)
288 PF10805 DUF2730: Protein of u 40.2 56 0.0012 29.6 5.0 49 438-486 45-98 (106)
289 cd06561 AlkD_like A new struct 38.9 64 0.0014 31.0 5.5 62 46-110 108-169 (197)
290 KOG3678 SARM protein (with ste 38.5 4.4E+02 0.0096 30.6 12.3 207 8-234 224-455 (832)
291 KOG1837 Uncharacterized conser 38.4 99 0.0021 39.8 8.1 73 41-113 1539-1613(1621)
292 PF07539 DRIM: Down-regulated 37.9 72 0.0016 30.4 5.6 57 202-262 17-74 (141)
293 PF05536 Neurochondrin: Neuroc 37.5 7.1E+02 0.015 28.9 15.0 130 97-232 72-214 (543)
294 KOG1293 Proteins containing ar 36.8 3.6E+02 0.0079 32.1 11.8 186 41-230 330-532 (678)
295 KOG4524 Uncharacterized conser 36.8 9.5E+02 0.021 30.1 17.3 81 158-238 799-883 (1014)
296 PF12031 DUF3518: Domain of un 36.6 65 0.0014 33.8 5.4 121 97-217 81-231 (257)
297 cd00197 VHS_ENTH_ANTH VHS, ENT 36.6 1.6E+02 0.0036 26.1 7.4 56 198-253 33-88 (115)
298 COG4889 Predicted helicase [Ge 35.3 31 0.00067 42.2 3.1 31 121-154 730-760 (1518)
299 PF00790 VHS: VHS domain; Int 33.1 3.5E+02 0.0076 25.2 9.3 105 23-129 24-136 (140)
300 PF07571 DUF1546: Protein of u 32.7 1E+02 0.0022 27.1 5.3 60 54-113 17-80 (92)
301 PF10046 BLOC1_2: Biogenesis o 31.5 1.5E+02 0.0032 26.5 6.2 44 435-486 42-85 (99)
302 PF04582 Reo_sigmaC: Reovirus 31.4 16 0.00034 39.6 0.0 63 432-498 25-87 (326)
303 KOG2188 Predicted RNA-binding 31.2 3.7E+02 0.008 31.9 10.6 69 138-213 380-450 (650)
304 PF06685 DUF1186: Protein of u 30.9 4.8E+02 0.011 27.3 10.7 31 166-196 115-147 (249)
305 KOG0414 Chromosome condensatio 30.7 2.6E+02 0.0057 35.4 9.8 102 8-109 312-426 (1251)
306 PF09268 Clathrin-link: Clathr 30.3 26 0.00057 24.1 0.9 21 82-102 3-23 (24)
307 KOG2213 Apoptosis inhibitor 5/ 29.6 7E+02 0.015 28.3 11.9 64 21-92 40-106 (460)
308 PF14868 DUF4487: Domain of un 28.9 2E+02 0.0043 33.6 8.1 93 21-113 457-554 (559)
309 KOG2149 Uncharacterized conser 28.7 7.1E+02 0.015 28.0 11.9 134 121-255 59-198 (393)
310 KOG3723 PH domain protein Melt 28.3 7.2E+02 0.016 29.5 12.1 78 34-113 190-268 (851)
311 KOG2229 Protein required for a 28.2 1E+03 0.022 27.9 13.6 93 1-114 32-129 (616)
312 PF08146 BP28CT: BP28CT (NUC21 28.2 3E+02 0.0066 26.4 8.1 75 21-95 37-121 (153)
313 KOG2141 Protein involved in hi 28.1 1E+03 0.022 29.0 13.5 37 3-40 317-353 (822)
314 cd03572 ENTH_epsin_related ENT 27.9 2.8E+02 0.0062 26.0 7.6 84 145-229 22-117 (122)
315 PF04513 Baculo_PEP_C: Baculov 27.8 1.7E+02 0.0037 28.3 6.2 53 435-487 20-76 (140)
316 KOG2005 26S proteasome regulat 27.0 8.5E+02 0.018 29.5 12.5 151 79-251 45-229 (878)
317 PF08324 PUL: PUL domain; Int 26.5 5.3E+02 0.011 26.2 10.1 107 8-115 43-190 (268)
318 KOG0889 Histone acetyltransfer 26.2 9E+02 0.02 34.5 14.0 131 42-177 983-1178(3550)
319 PF06012 DUF908: Domain of Unk 26.2 3.6E+02 0.0077 29.0 9.1 79 166-249 221-310 (329)
320 KOG1087 Cytosolic sorting prot 25.7 3E+02 0.0065 31.5 8.7 71 121-192 39-113 (470)
321 PRK09169 hypothetical protein; 25.6 1.9E+03 0.042 30.3 21.4 197 7-210 544-763 (2316)
322 PF00517 GP41: Retroviral enve 25.2 1.9E+02 0.004 29.2 6.4 59 445-511 17-83 (204)
323 KOG1048 Neural adherens juncti 24.7 4.1E+02 0.0088 32.1 9.7 106 41-149 520-640 (717)
324 KOG1048 Neural adherens juncti 24.5 3.6E+02 0.0077 32.5 9.2 108 121-231 519-641 (717)
325 KOG2153 Protein involved in th 23.7 2.7E+02 0.0059 33.1 7.9 35 79-113 321-355 (704)
326 PF12333 Ipi1_N: Rix1 complex 23.6 1E+02 0.0022 27.6 3.7 54 41-94 9-65 (102)
327 KOG1988 Uncharacterized conser 23.5 8.6E+02 0.019 30.2 12.0 98 10-114 62-170 (970)
328 PF06371 Drf_GBD: Diaphanous G 23.2 1.4E+02 0.003 28.4 4.9 28 203-230 159-186 (187)
329 cd03568 VHS_STAM VHS domain fa 22.8 6.7E+02 0.014 23.9 10.0 85 81-165 36-126 (144)
330 KOG4217 Nuclear receptors of t 22.8 7.1E+02 0.015 28.8 10.6 100 99-231 479-582 (605)
331 smart00288 VHS Domain present 22.7 6.2E+02 0.014 23.5 9.9 85 82-166 37-128 (133)
332 PF06476 DUF1090: Protein of u 22.5 57 0.0012 30.2 1.9 15 473-487 42-56 (115)
333 KOG0889 Histone acetyltransfer 22.5 4.7E+02 0.01 36.9 10.5 114 56-171 1246-1368(3550)
334 COG5218 YCG1 Chromosome conden 22.5 1.4E+03 0.03 27.5 15.6 113 52-171 20-141 (885)
335 TIGR02976 phageshock_pspB phag 21.7 55 0.0012 28.2 1.6 19 467-485 49-67 (75)
336 PF04388 Hamartin: Hamartin pr 21.4 1.3E+03 0.027 27.6 13.1 147 84-249 6-158 (668)
337 smart00544 MA3 Domain in DAP-5 21.0 2.8E+02 0.0061 24.3 6.0 88 6-96 2-90 (113)
338 PF14668 RICTOR_V: Rapamycin-i 20.8 1.6E+02 0.0034 25.2 4.1 53 178-232 4-59 (73)
339 cd03569 VHS_Hrs_Vps27p VHS dom 20.7 7.2E+02 0.016 23.5 10.0 85 80-164 39-129 (142)
340 PF06667 PspB: Phage shock pro 20.7 60 0.0013 28.0 1.6 19 467-485 49-67 (75)
341 PF08625 Utp13: Utp13 specific 20.4 2E+02 0.0042 27.5 5.1 50 8-57 28-79 (141)
342 PF05997 Nop52: Nucleolar prot 20.3 5.7E+02 0.012 25.9 8.8 70 86-155 4-77 (217)
No 1
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.9e-31 Score=299.98 Aligned_cols=266 Identities=16% Similarity=0.194 Sum_probs=229.3
Q ss_pred hHHHHHHHHHhhcCCCh------------h---HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHH
Q 007670 3 HALKTSVNGLLNKLSDR------------D---TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHV 66 (594)
Q Consensus 3 ~~Lk~rvl~~L~KLsDr------------D---T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~l 66 (594)
.+|---+|...+.+.|+ | ++++|.+.||.+|.+|+|++ +|+++..+...++|++|..|++++++
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~A 371 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLA 371 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34455566666666554 2 99999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH-----HhHHHHHHHHcc-CCChhHH
Q 007670 67 IATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-----TMLKLLSDALFT-EQDTNAQ 138 (594)
Q Consensus 67 LGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~-----~~lkPL~eaL~~-eq~k~vQ 138 (594)
|+++++|| .|.++|++||++|+.+|+||++.||-|||+|+|+++..+ +|.. ..+.|++-.+++ .+++.||
T Consensus 372 ls~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl--~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ 449 (1075)
T KOG2171|consen 372 LSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL--QPEIQKKHHERLPPALIALLDSTQNVRVQ 449 (1075)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh--cHHHHHHHHHhccHHHHHHhcccCchHHH
Confidence 99999999 888999999999999999999999999999999999999 5533 367766666654 4688999
Q ss_pred HHHHHHHHHHHhhcCCC-cchhHHHHHHHHHH-HhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcC--
Q 007670 139 VGAALCLAATIDAAQDP-DAGKLGRMEVRLER-LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSS-- 213 (594)
Q Consensus 139 ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~k-lL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~s-- 213 (594)
..||.||..+.|..+.. +.|||+.||++++. |+.++...+|.+++.+|||+|.+++. |.|||+.+||.|..||.+
T Consensus 450 ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~ 529 (1075)
T KOG2171|consen 450 AHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNAD 529 (1075)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCC
Confidence 99999999998887655 57999999995554 55555778999999999999977655 789999999999999974
Q ss_pred --CcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhH----------HHHHHhhcCCCCCCC
Q 007670 214 --QDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK----------MIEAWKQVPDLSEEA 270 (594)
Q Consensus 214 --eDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK----------~i~lWk~i~~v~~~~ 270 (594)
+...+|.-.+||++.||.++| +.|.|++.++|+.+-....+- +|.+|..+.+++++.
T Consensus 530 ~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~ 599 (1075)
T KOG2171|consen 530 DKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDD 599 (1075)
T ss_pred chhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchh
Confidence 458999999999999999998 899999999998666553433 999999999999653
No 2
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1e-24 Score=239.31 Aligned_cols=225 Identities=17% Similarity=0.203 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL 98 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~V 98 (594)
-+++.++.||.||.-+..+-++.+|+.|.+...++.|-+|.++|++||.+|||| .+-||||.++|++++.|.|--+-|
T Consensus 371 LRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplV 450 (885)
T KOG2023|consen 371 LRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLV 450 (885)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccce
Confidence 789999999999999999889999999999999999999999999999999999 888999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCc
Q 007670 99 QATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV 175 (594)
Q Consensus 99 R~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~ 175 (594)
|..+||||++++.|+..++-..|++|+++.|+ -+.+|.||.+||.|+|.+.|.+++..+|||..++..|.++| .-
T Consensus 451 RsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af--~k 528 (885)
T KOG2023|consen 451 RSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAF--GK 528 (885)
T ss_pred eeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH--HH
Confidence 99999999999999987774458888888776 37899999999999999999999999999999999999999 67
Q ss_pred hhhHHH--HHHHHHHHH-hcCcCc--CCchHHHHHHHHhhhc---CCc---HHHHHHHHHHHHHHHHHcCCccchhh---
Q 007670 176 FKAKAA--GLVVVGSVI-GSGAVD--GSGLKGLVSCLLGFLS---SQD---WAARKAAAEALWRLAVVEKDAVPEFK--- 241 (594)
Q Consensus 176 fkaK~a--lL~aIGSiA-~a~~~~--~pyf~~lm~~L~e~L~---seD---w~lRKaAaDaLg~IA~a~gd~f~py~--- 241 (594)
|+.|.. ++.|||.+| .+|-+. ..|.+-+||-|++.+. ++| |++ .|||++||+++|+-|.||.
T Consensus 529 YQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPL----LEClSsia~AL~~gF~P~~~~V 604 (885)
T KOG2023|consen 529 YQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPL----LECLSSIASALGVGFLPYAQPV 604 (885)
T ss_pred HhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHH----HHHHHHHHHHHhccccccCHHH
Confidence 777776 778999999 555443 3889999999999854 444 884 9999999999999999996
Q ss_pred -hHHHHHHHhc
Q 007670 242 -GKCLKIFESK 251 (594)
Q Consensus 242 -~~~m~sLEs~ 251 (594)
+.|+++++.|
T Consensus 605 y~Rc~~il~~t 615 (885)
T KOG2023|consen 605 YQRCFRILQKT 615 (885)
T ss_pred HHHHHHHHHHH
Confidence 6788888877
No 3
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.7e-11 Score=135.18 Aligned_cols=250 Identities=16% Similarity=0.160 Sum_probs=187.8
Q ss_pred HHHHHHHhhcCCChh------HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---cc
Q 007670 6 KTSVNGLLNKLSDRD------TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NL 76 (594)
Q Consensus 6 k~rvl~~L~KLsDrD------T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~i 76 (594)
-=-++..|+|=+++| +++.|-..|..+|+..--+-+|+.|..|.+.+++|+|..|.+++++||-+-+|- -+
T Consensus 321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L 400 (859)
T KOG1241|consen 321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL 400 (859)
T ss_pred hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh
Confidence 335677788843222 888888899999988877779999999999999999999999999999998877 88
Q ss_pred ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---------------------h------------------
Q 007670 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------A------------------ 117 (594)
Q Consensus 77 sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---------------------~------------------ 117 (594)
.|..+.-+|+|++...||.-.||+++.+++|++++++.+. |
T Consensus 401 t~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 401 TPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAY 480 (859)
T ss_pred hHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998741 0
Q ss_pred ----------hH-HhHHHHHHHHcc--C----CChhHHHHHHHHHHHHHhhcC---------------------------
Q 007670 118 ----------FV-TMLKLLSDALFT--E----QDTNAQVGAALCLAATIDAAQ--------------------------- 153 (594)
Q Consensus 118 ----------~~-~~lkPL~eaL~~--e----q~k~vQ~~Aa~ALaavvE~l~--------------------------- 153 (594)
.. .|+.+++..|++ + ++-+.-.+|.-||-.+|.+.+
T Consensus 481 eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l 560 (859)
T KOG1241|consen 481 EAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQIL 560 (859)
T ss_pred HhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00 144444444441 1 223344455555555555543
Q ss_pred ---------------------------CCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHh-cCcCcCCchHHHH
Q 007670 154 ---------------------------DPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLV 204 (594)
Q Consensus 154 ---------------------------~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~-a~~~~~pyf~~lm 204 (594)
..+.++-..||.-|+++|+++ +--+..-++.+|++++. .|+.|..|++.+.
T Consensus 561 ~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~ 640 (859)
T KOG1241|consen 561 SLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFK 640 (859)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 333333455666677777663 44455667778888774 4666778888888
Q ss_pred HHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH----hcchhH
Q 007670 205 SCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE----SKRFDK 255 (594)
Q Consensus 205 ~~L~e~L~-seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE----s~RfDK 255 (594)
|.|..-|. ..|.++=.+|.-..|.|+.++++.|.||.+.+|.+|= +.+.|+
T Consensus 641 pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR 696 (859)
T KOG1241|consen 641 PYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHR 696 (859)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccc
Confidence 88888884 5799999999999999999999999999999987554 444444
No 4
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.17 E-value=1.1e-09 Score=120.70 Aligned_cols=242 Identities=14% Similarity=0.118 Sum_probs=188.6
Q ss_pred HHHHHhhcCC----Chh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---cccc
Q 007670 8 SVNGLLNKLS----DRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSP 78 (594)
Q Consensus 8 rvl~~L~KLs----DrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isp 78 (594)
.+|..|.|=+ |+| +...|...|...|+.--..-+.+.+..+.+.+.+++|..|.+++++||-+-+|- -+.|
T Consensus 325 ~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~ 404 (858)
T COG5215 325 ELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTK 404 (858)
T ss_pred HHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHh
Confidence 3455666632 222 888888888888886655458899999999999999999999999999997776 7889
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---------------------hh-------------------
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------------------AF------------------- 118 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---------------------~~------------------- 118 (594)
+++..+|.|.....||---|.+.++|++|++|+++.+- |+
T Consensus 405 ~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a 484 (858)
T COG5215 405 IVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKA 484 (858)
T ss_pred hHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhh
Confidence 99999999999999988889999999999999998740 00
Q ss_pred ----HH----hHHHHHHHHcc-----CCChhHHHHHHHHHHHHHhhcCCCcchhH-------------------------
Q 007670 119 ----VT----MLKLLSDALFT-----EQDTNAQVGAALCLAATIDAAQDPDAGKL------------------------- 160 (594)
Q Consensus 119 ----~~----~lkPL~eaL~~-----eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL------------------------- 160 (594)
.+ |..-++.+|++ .++-+.-.+++.||-.+|+.+++...+.+
T Consensus 485 ~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~e 564 (858)
T COG5215 485 VREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATE 564 (858)
T ss_pred hccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 11 33444444442 45667777888888888888766554332
Q ss_pred -------------------------------HHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHH
Q 007670 161 -------------------------------GRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCL 207 (594)
Q Consensus 161 -------------------------------~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L 207 (594)
..||+-++++|.+. ..-+-.-++-+||+++.. ++.|..|.+.++|.|
T Consensus 565 D~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl 644 (858)
T COG5215 565 DQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYL 644 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 23666666777555 333455577788888854 455789999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670 208 LGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (594)
Q Consensus 208 ~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE 249 (594)
...|...|.++=..|.-.+|.||..+|..|.+|.+.+|.+|-
T Consensus 645 ~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~Lv 686 (858)
T COG5215 645 TRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLV 686 (858)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999988999999999999999999999999999988887765
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=6.6e-10 Score=129.82 Aligned_cols=235 Identities=17% Similarity=0.157 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHhhcCC---CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCC
Q 007670 21 TYSQAAKELDSIAATVDP---TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDK 94 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lpp---e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~ 94 (594)
-++.|+-.|-.+++.=+- ..|+.+|+.+...+.++.|.+|-+|+.++|-++... +-..|=++|+|.++--+-|+
T Consensus 364 ~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 364 ERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc
Confidence 556666667666665321 148889999999999999999999999999998888 55556777888999999998
Q ss_pred Ch-hHHHHHHHHHHhhchhhhcchhHHhHHH----HHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670 95 NS-ALQATCISTVSSLSPRVGASAFVTMLKL----LSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (594)
Q Consensus 95 Ds-~VR~Ac~~ALG~LAe~l~~~~~~~~lkP----L~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k 169 (594)
+. .|...++-|+-.+++.+.+.-+.-||.+ ++..|.....+.+|..+..||+.+-+.+.....+|+..+||-|.+
T Consensus 444 ~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~ 523 (1075)
T KOG2171|consen 444 QNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKN 523 (1075)
T ss_pred CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 86 6888788888888888865433324444 444554566899999999999999999999999999999999999
Q ss_pred HhcCCc----hhhHHHHHHHHHHHHh-cCcC-cCCchHHHHHHHHhh---hcCCcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670 170 LLKSEV----FKAKAAGLVVVGSVIG-SGAV-DGSGLKGLVSCLLGF---LSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (594)
Q Consensus 170 lL~s~~----fkaK~alL~aIGSiA~-a~~~-~~pyf~~lm~~L~e~---L~seDw~lRKaAaDaLg~IA~a~gd~f~py 240 (594)
.|.+.+ ...+.-.+.+|+-++. +|++ |.|+...+|+.+.+. -..+|-.+|.--+-+.+.|+.++|+.|.||
T Consensus 524 ~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~ 603 (1075)
T KOG2171|consen 524 FLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPF 603 (1075)
T ss_pred HHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhH
Confidence 997664 2245556889998884 4645 789999999999887 445788899999999999999999999999
Q ss_pred hhHHH-HHHHhcchhH
Q 007670 241 KGKCL-KIFESKRFDK 255 (594)
Q Consensus 241 ~~~~m-~sLEs~RfDK 255 (594)
...+| -.+-+.+.|-
T Consensus 604 L~~Vmppl~~ta~~~p 619 (1075)
T KOG2171|consen 604 LPVVMPPLLKTARLDP 619 (1075)
T ss_pred HHHHhHHHHHhhccCC
Confidence 99999 6888888886
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.86 E-value=3.9e-08 Score=96.85 Aligned_cols=189 Identities=20% Similarity=0.254 Sum_probs=134.7
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-------ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-------~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
|..++..+.....+.+|..|.+++.-|-.++.++ .+.++|..++..|++.+.|.-+.|-..+|.+++.|+..+
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l 84 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQL 84 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4445556644457789999999999999997777 233456666788999999999999999999999999999
Q ss_pred hcc--hhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH-HHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670 114 GAS--AFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM-EVRLERLLKSEVFKAKAAGLVVVGSV 189 (594)
Q Consensus 114 ~~~--~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L-~~RL~klL~s~~fkaK~alL~aIGSi 189 (594)
... ++. .++++|+.-+ ++.++.+...|..||..+++..+ |.+++ .+.+...+++.+.++|..++..+..+
T Consensus 85 ~~~~~~~~~~~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~-----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~ 158 (228)
T PF12348_consen 85 GSHFEPYADILLPPLLKKL-GDSKKFIREAANNALDAIIESCS-----YSPKILLEILSQGLKSKNPQVREECAEWLAII 158 (228)
T ss_dssp GGGGHHHHHHHHHHHHHGG-G---HHHHHHHHHHHHHHHTTS------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCC-----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 653 222 3777788877 78889999999999999999765 44565 66778889999999999999999998
Q ss_pred HhcCc---C-cC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670 190 IGSGA---V-DG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD 235 (594)
Q Consensus 190 A~a~~---~-~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd 235 (594)
+..-+ . .. .+++.+++.|..+|.+.+-.+|.+|-.++..+....|+
T Consensus 159 l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 159 LEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 86554 2 22 34688999999999999999999999999999988763
No 7
>PRK09687 putative lyase; Provisional
Probab=98.83 E-value=1e-07 Score=98.89 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=134.9
Q ss_pred HHHHHHHHhhc-CCChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch
Q 007670 5 LKTSVNGLLNK-LSDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI 80 (594)
Q Consensus 5 Lk~rvl~~L~K-LsDrD--T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL 80 (594)
++..-+..|.+ |.|.| ....|+..|.. +..+. ++.+...+ .++++.+|++++.+||.+...-. ..
T Consensus 20 ~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~----~~~~~~~~~l~~ll----~~~d~~vR~~A~~aLg~lg~~~~---~~ 88 (280)
T PRK09687 20 CKKLNDDELFRLLDDHNSLKRISSIRVLQL----RGGQDVFRLAIELC----SSKNPIERDIGADILSQLGMAKR---CQ 88 (280)
T ss_pred HhhccHHHHHHHHhCCCHHHHHHHHHHHHh----cCcchHHHHHHHHH----hCCCHHHHHHHHHHHHhcCCCcc---ch
Confidence 33333444433 46666 34455555543 34444 55555533 35788999999999999743111 15
Q ss_pred HHHHHHHHhh-hcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670 81 TKIINSITRN-FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (594)
Q Consensus 81 pkIL~~Ivrr-LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y 159 (594)
++.++.+... ++|+|+.||.+++.+||.++..... +...++..|..++ .+.+..|+.+|+.||..+- +
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~----~----- 157 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITA-FDKSTNVRFAVAFALSVIN----D----- 157 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHh-hCCCHHHHHHHHHHHhccC----C-----
Confidence 6788888876 8999999999999999999654321 1223566666666 5668889999999995331 1
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 160 L~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
+..++-|+.+|+.++..++..++.++|.+ + ..-+.+++.|...|.+++|.+|+.|+.+||.+.
T Consensus 158 -~~ai~~L~~~L~d~~~~VR~~A~~aLg~~---~----~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 -EAAIPLLINLLKDPNGDVRNWAAFALNSN---K----YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHhcC---C----CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 34566788888888888888888888865 1 112467788888888999999999999998763
No 8
>PRK09687 putative lyase; Provisional
Probab=98.79 E-value=3.4e-07 Score=94.95 Aligned_cols=150 Identities=15% Similarity=0.148 Sum_probs=119.1
Q ss_pred CCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC
Q 007670 53 SSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE 132 (594)
Q Consensus 53 ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e 132 (594)
.++++.+|..++.+||.++..+. .+.++.+..+...+.|++..||.+++.+||.+...- .+.+|+.+| .+
T Consensus 101 ~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~-------ai~~L~~~L-~d 170 (280)
T PRK09687 101 EDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA-------AIPLLINLL-KD 170 (280)
T ss_pred cCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH-------HHHHHHHHh-cC
Confidence 46778999999999999976552 236788888899999999999999999999886544 778888888 67
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc
Q 007670 133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS 212 (594)
Q Consensus 133 q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~ 212 (594)
.+..|...|+.+|..+-. . -+...+-|.++|+.++..++..++.++|.+ + -+..+|.|..+|.
T Consensus 171 ~~~~VR~~A~~aLg~~~~--~------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~------~~~av~~Li~~L~ 233 (280)
T PRK09687 171 PNGDVRNWAAFALNSNKY--D------NPDIREAFVAMLQDKNEEIRIEAIIGLALR---K------DKRVLSVLIKELK 233 (280)
T ss_pred CCHHHHHHHHHHHhcCCC--C------CHHHHHHHHHHhcCCChHHHHHHHHHHHcc---C------ChhHHHHHHHHHc
Confidence 888999999999988711 1 124555678888888999988877777642 1 1367899999998
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 007670 213 SQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 213 seDw~lRKaAaDaLg~IA~ 231 (594)
+++ +|..|+++||.|..
T Consensus 234 ~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 234 KGT--VGDLIIEAAGELGD 250 (280)
T ss_pred CCc--hHHHHHHHHHhcCC
Confidence 888 47889999998855
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.3e-07 Score=103.53 Aligned_cols=228 Identities=16% Similarity=0.174 Sum_probs=180.5
Q ss_pred HHHHHHHHhhcCCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch
Q 007670 5 LKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI 80 (594)
Q Consensus 5 Lk~rvl~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL 80 (594)
+..-+-.+|++.+|.+ -++.|....+.+...+++..+..||.-+.......+|..+.+++-++|.++... .++-.|
T Consensus 214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 3455667889998887 567888889999999999887777766655555559999999999999888877 888899
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhh--cCCCcch
Q 007670 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA--AQDPDAG 158 (594)
Q Consensus 81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~--l~~~i~~ 158 (594)
|.|+|.+...|-|..+.||+|+-.+|-.+++.+...-...+++-|+++| ++++..+. -|++.+... ..+...+
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l-~dp~~~~~----e~~~~L~~ttFV~~V~~p 368 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL-ADPSCYTP----ECLDSLGATTFVAEVDAP 368 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-cCcccchH----HHHHhhcceeeeeeecch
Confidence 9999999999999999999999999999999884333334999999999 55553333 233433332 2333347
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cC--cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007670 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SG--AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (594)
Q Consensus 159 yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~-a~--~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g- 234 (594)
-|..|+|=|-+-|+..++..|......|+=++. ++ .+..||++.++|-|..-+.+.+=++|-.|+-+|+.+-.-.|
T Consensus 369 sLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~ 448 (569)
T KOG1242|consen 369 SLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE 448 (569)
T ss_pred hHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence 888899999999988888887777777776553 32 33459999999999999988899999999999999998877
Q ss_pred Ccc
Q 007670 235 DAV 237 (594)
Q Consensus 235 d~f 237 (594)
..|
T Consensus 449 ~~f 451 (569)
T KOG1242|consen 449 VSF 451 (569)
T ss_pred hcc
Confidence 455
No 10
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.66 E-value=1.5e-06 Score=98.56 Aligned_cols=212 Identities=16% Similarity=0.162 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcC
Q 007670 21 TYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD 93 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~-----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD 93 (594)
-.++.+...+.+...|+... ...++.-|+-+++++....- --+..||.++... -+.||||.|++.|..+|+.
T Consensus 732 yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn 810 (1172)
T KOG0213|consen 732 YRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN 810 (1172)
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC
Confidence 35778999999999986433 34555555555555554332 3345677777777 7899999999999999999
Q ss_pred CChhHHHHHHHHHHhhchhhhcch-h--HH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHH
Q 007670 94 KNSALQATCISTVSSLSPRVGASA-F--VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLE 168 (594)
Q Consensus 94 ~Ds~VR~Ac~~ALG~LAe~l~~~~-~--~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~ 168 (594)
+.+-||+-+++.++.++--+-... + -. +=.-|.|+| |+..|.|-..-..||-+++...+ ....+=...|+|||.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEyl-geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrlt 889 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLT 889 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhc-CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccch
Confidence 999999999999999998884321 1 12 334567788 88889888766666666665542 222334566888899
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 169 klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~--lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g 234 (594)
-.|++.+-|+..-.+.++|.|+--|.++.+.=+| +-=-|.+.|.+-.-..|.+|.+++|.||.++|
T Consensus 890 PILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG 957 (1172)
T KOG0213|consen 890 PILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG 957 (1172)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC
Confidence 9999999999999999999999766665433222 22235566666677899999999999999988
No 11
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.61 E-value=1.5e-06 Score=103.05 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=65.0
Q ss_pred HHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 007670 87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (594)
Q Consensus 87 IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~R 166 (594)
+++.|+|+|+.||.+++.+||.+... ..|..+| ++.++.|+..|+.+|..+-.... .-.+.
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~~~----------~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~ 779 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVDDV----------ESVAGAA-TDENREVRIAVAKGLATLGAGGA--------PAGDA 779 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccCc----------HHHHHHh-cCCCHHHHHHHHHHHHHhccccc--------hhHHH
Confidence 34556666666666666666654211 1233333 55666666666666665533211 01344
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 167 LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 167 L~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
|.++++.++..++.+++.++|.+ +. + +.+.+.|...|.++||.+|.+|+.+|+.+.
T Consensus 780 L~~ll~D~d~~VR~aA~~aLg~~---g~---~--~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 780 VRALTGDPDPLVRAAALAALAEL---GC---P--PDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHHhc---CC---c--chhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 55677777777777777666643 11 1 122344666677777777777777777653
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.56 E-value=1e-06 Score=96.39 Aligned_cols=185 Identities=18% Similarity=0.212 Sum_probs=102.7
Q ss_pred CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc
Q 007670 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115 (594)
Q Consensus 37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~ 115 (594)
.++-++.+++.|.....+++|.+||.|++++.-+.... -..+.- +++.+.+.|.|+|+.|+.+|+.++..+ ..- +
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~--~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~-~ 183 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE--LIPKLKQLLSDKDPSVVSAALSLLSEI-KCN-D 183 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG--HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCT-H
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH--HHHHHhhhccCCcchhHHHHHHHHHHH-ccC-c
Confidence 44446666666666656666666666666666665554 111111 456666666666666666666666655 111 0
Q ss_pred chhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670 116 SAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 116 ~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA 190 (594)
.....++.+++..|. +..++-+|.....+|..++... ...- ..+++.+..+|.+.+ .+.+++++..+.
T Consensus 184 ~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~----~~~~~~~~~i~~l~~~l~s~~---~~V~~e~~~~i~ 256 (526)
T PF01602_consen 184 DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME----PEDADKNRIIEPLLNLLQSSS---PSVVYEAIRLII 256 (526)
T ss_dssp HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC----hhhhhHHHHHHHHHHHhhccc---cHHHHHHHHHHH
Confidence 000013333333332 4556665554444444322211 1111 345555555555333 233555555555
Q ss_pred hcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 191 GSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 191 ~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
...... +....+++.|..+|.+.|+.+|-.|+++|..|+...
T Consensus 257 ~l~~~~-~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~ 298 (526)
T PF01602_consen 257 KLSPSP-ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN 298 (526)
T ss_dssp HHSSSH-HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC
T ss_pred Hhhcch-HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc
Confidence 433221 256778999999999999999999999999998876
No 13
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=98.53 E-value=4.9e-07 Score=80.19 Aligned_cols=89 Identities=20% Similarity=0.337 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCC
Q 007670 59 VRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQ 133 (594)
Q Consensus 59 ~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq 133 (594)
+||.++..|+.++.+. .+.+|+++|++.|++.+.|+|+.||-++|++|..++...-.. ...++.-+|++|. .+.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~-~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE-ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCC
Confidence 7999999999998888 899999999999999999999999999999999999888322 2227788888875 688
Q ss_pred ChhHHHHHHHHHHHHH
Q 007670 134 DTNAQVGAALCLAATI 149 (594)
Q Consensus 134 ~k~vQ~~Aa~ALaavv 149 (594)
++.||.+|.. |++++
T Consensus 81 d~~Vr~~a~~-Ld~ll 95 (97)
T PF12755_consen 81 DENVRSAAEL-LDRLL 95 (97)
T ss_pred chhHHHHHHH-HHHHh
Confidence 9999998876 66554
No 14
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=1.4e-06 Score=98.12 Aligned_cols=254 Identities=17% Similarity=0.187 Sum_probs=174.9
Q ss_pred HHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccc-hH
Q 007670 7 TSVNGLLNKL-S-DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPY-IT 81 (594)
Q Consensus 7 ~rvl~~L~KL-s-DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isph-Lp 81 (594)
+.+.+.|..= | |++|++.+..-|+.+-+ . | .|.-+|-+|.-...+.+-+.|..+=++|-.=..+| .+.++ +.
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~-p-dfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~ 89 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFNL-F-P-DFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLD 89 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHhc-c-c-chhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHH
Confidence 3344444332 2 77799988888877654 1 1 25555666666677778888998888888878888 44444 55
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-----c
Q 007670 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-----D 156 (594)
Q Consensus 82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-----i 156 (594)
-|=+.+++.|-|+++-||...-..+..++....-+.-..+|+-|.+.| ..++-++|.||+.||.+++|-..+. .
T Consensus 90 yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L-~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 90 YIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELL-DSPDYNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHh-cCCcccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 556688999999999999654444444333322222334777777777 7788899999999999999975322 1
Q ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD 235 (594)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd 235 (594)
..-+..++||+++.++|++.+.+..++.+|--++-.-.. +.-..+..+..|-..-.+++-.+||..|-+|.-+.....+
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d 248 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD 248 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence 235778999999999999999999988877654422211 1123344444444334578999999999999999998889
Q ss_pred ccchhhhHHHHHHHhcchhH-------HHHHHhhcC
Q 007670 236 AVPEFKGKCLKIFESKRFDK-------MIEAWKQVP 264 (594)
Q Consensus 236 ~f~py~~~~m~sLEs~RfDK-------~i~lWk~i~ 264 (594)
.+.|+...++...=..--|. |-++|-.++
T Consensus 249 kl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 249 KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 99999888886322222222 566777776
No 15
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.50 E-value=7.1e-08 Score=75.46 Aligned_cols=53 Identities=19% Similarity=0.456 Sum_probs=50.2
Q ss_pred CcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670 57 PGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (594)
Q Consensus 57 p~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L 109 (594)
|.+|.+++.+||.+++.+ .+.||++.+++.++..|+|+++.||.++++|||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999998888 99999999999999999999999999999999976
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.48 E-value=2.2e-06 Score=101.64 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=94.0
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 007670 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRME 164 (594)
Q Consensus 85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~ 164 (594)
+.+...|.|++..||.+++.+||.+...-. ..+..|...+ ++.++.|+..|+.+|..+... +.+.
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~-----~~~~~L~~ll-~D~d~~VR~aA~~aLg~~g~~---------~~~~ 809 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA-----PAGDAVRALT-GDPDPLVRAAALAALAELGCP---------PDDV 809 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc-----hhHHHHHHHh-cCCCHHHHHHHHHHHHhcCCc---------chhH
Confidence 456789999999999999999999976541 1244455555 788999999999999887431 1223
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (594)
Q Consensus 165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I 229 (594)
+.+..+|+.++..++.+++.++|.+. -+..++.|...|.+++|.+|++|+.+|+.+
T Consensus 810 ~~l~~aL~d~d~~VR~~Aa~aL~~l~---------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 810 AAATAALRASAWQVRQGAARALAGAA---------ADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhcc---------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 45788899999999998888887422 134568888899999999999999999997
No 17
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=2.5e-06 Score=97.18 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=162.3
Q ss_pred hHHHHHhhhhcCC---CCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCC-------------hhHHHHH
Q 007670 41 LPTFLSCILSTNS---SDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN-------------SALQATC 102 (594)
Q Consensus 41 lp~fLs~L~e~~s---s~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~D-------------s~VR~Ac 102 (594)
++.++..|..... ......|-+++-+|+.+...+ .+.|-+.++..+|..+|...= -.+..--
T Consensus 496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~L 575 (859)
T KOG1241|consen 496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLL 575 (859)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 5555555544422 245788999999999999888 888888888888888663321 1355666
Q ss_pred HHHHHhhchhhhcc-hhHH--hHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh-cCCchh
Q 007670 103 ISTVSSLSPRVGAS-AFVT--MLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFK 177 (594)
Q Consensus 103 ~~ALG~LAe~l~~~-~~~~--~lkPL~eaL~~e-q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL-~s~~fk 177 (594)
|.+|+.+-..+... +.++ ++.-++-.| +. ..-.++.-|++|+.+++++++.....|.+.+-|=|..-| +...++
T Consensus 576 c~~Lq~i~rk~~~~~~~~~d~iM~lflri~-~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~q 654 (859)
T KOG1241|consen 576 CNTLQSIIRKVGSDIREVSDQIMGLFLRIF-ESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQ 654 (859)
T ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHHH-cCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHH
Confidence 66666665555321 2222 444444444 43 455688999999999999999999999999999999999 666999
Q ss_pred hHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670 178 AKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (594)
Q Consensus 178 aK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~se--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE 249 (594)
+-.+++++||-++.+-++ +.||-+.+|..|..+|+++ +..+.-+-+-+.|-||.+.|..|.||.+.+|..|.
T Consensus 655 Vc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq 729 (859)
T KOG1241|consen 655 VCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQ 729 (859)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999988544 7899999999999999986 67888899999999999999999999999887665
No 18
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.6e-05 Score=89.06 Aligned_cols=227 Identities=17% Similarity=0.149 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHH-Hhhh---ccccchHHHHHHHHhhhcCC
Q 007670 21 TYSQAAKELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATL-SNSH---NLSPYITKIINSITRNFRDK 94 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl-ae~h---~isphLpkIL~~IvrrLkD~ 94 (594)
.++-|...+=.+...+.-+. =..||.-+.....+-+++.|++ ..+|+.. ..++ ..-||+..++|.|+.-+.|.
T Consensus 150 ~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re-~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~ 228 (569)
T KOG1242|consen 150 ERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNRE-AALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDK 228 (569)
T ss_pred HHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHH-HHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhcc
Confidence 44444444444444443333 2346777777777788888887 4444443 2333 89999999999999999999
Q ss_pred ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHH--HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q 007670 95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQ--VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK 172 (594)
Q Consensus 95 Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ--~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~ 172 (594)
+..||+|+.+|+-++-..+.......+++|++..|... .-| .++.--|..+.+.++....-+++.|+|.+.+.|.
T Consensus 229 ~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~---kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~ 305 (569)
T KOG1242|consen 229 INKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA---KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLW 305 (569)
T ss_pred chhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH---hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHc
Confidence 99999999999999999985444445999999999644 222 3555667777788777777789999999999999
Q ss_pred CCchhhHHHHHHHHHHHHhcCcC--------------------------------c-----CCchHHHHHHHHhhhcCCc
Q 007670 173 SEVFKAKAAGLVVVGSVIGSGAV--------------------------------D-----GSGLKGLVSCLLGFLSSQD 215 (594)
Q Consensus 173 s~~fkaK~alL~aIGSiA~a~~~--------------------------------~-----~pyf~~lm~~L~e~L~seD 215 (594)
..+.++|.+.+.++--+-.+... | .|-+.-+||.|+.-|..-+
T Consensus 306 DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 306 DTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERS 385 (569)
T ss_pred cCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhcc
Confidence 88999988877665443322111 1 1333334444444444445
Q ss_pred HHHHHHHHHHHHHHHHHcC--CccchhhhHHHHHHHhc
Q 007670 216 WAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFESK 251 (594)
Q Consensus 216 w~lRKaAaDaLg~IA~a~g--d~f~py~~~~m~sLEs~ 251 (594)
-.+++.++...+-++.-+- ..+.||..+++.-|+.-
T Consensus 386 t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHH
Confidence 5556666666666666552 36666666666555443
No 19
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.36 E-value=2.5e-05 Score=87.07 Aligned_cols=239 Identities=18% Similarity=0.140 Sum_probs=163.5
Q ss_pred HHHhhcCCChh------HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHH-Hhh-----h--
Q 007670 10 NGLLNKLSDRD------TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATL-SNS-----H-- 74 (594)
Q Consensus 10 l~~L~KLsDrD------T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl-ae~-----h-- 74 (594)
-.+++..+|.- |+-+=-+.=|.+|..++|.+ ++...+...--.. +.|..--.|-..+-.+ +.. |
T Consensus 411 p~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~-D~p~~~~ncsw~~~nlv~h~a~a~~~~~ 489 (858)
T COG5215 411 PGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM-DCPFRSINCSWRKENLVDHIAKAVREVE 489 (858)
T ss_pred HHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh-ccchHHhhhHHHHHhHHHhhhhhhcccc
Confidence 34566777643 33333333355777788888 7777776654332 2333333333333333 221 1
Q ss_pred -ccccchHHHHHHHHhh--hcCCChhHHHHHHHHHHhhchhhhcch------h---------------------------
Q 007670 75 -NLSPYITKIINSITRN--FRDKNSALQATCISTVSSLSPRVGASA------F--------------------------- 118 (594)
Q Consensus 75 -~isphLpkIL~~Ivrr--LkD~Ds~VR~Ac~~ALG~LAe~l~~~~------~--------------------------- 118 (594)
++.|+-+-|+..+++. +.+.++..|-+...|||.|-.+..+.. +
T Consensus 490 S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~ 569 (858)
T COG5215 490 SFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLV 569 (858)
T ss_pred chhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 7788888888888754 568999999999999999988876410 0
Q ss_pred -------------------------HHhHHHHHHHHccCCChh-HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q 007670 119 -------------------------VTMLKLLSDALFTEQDTN-AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK 172 (594)
Q Consensus 119 -------------------------~~~lkPL~eaL~~eq~k~-vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~ 172 (594)
...+--||.-++...++. +-.-..+|+-++--.+++....|+++..|-|.+.|+
T Consensus 570 ~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln 649 (858)
T COG5215 570 EELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN 649 (858)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc
Confidence 000111111111222222 223345555555555555666789999999999998
Q ss_pred CCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670 173 SEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (594)
Q Consensus 173 s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~se--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE 249 (594)
.....+-..+++.||-+|.+ +.+|.+|-+.+|..|.++|.++ +..+.-+-+-+.|-||.+.|..|.+|.+.+|-.+.
T Consensus 650 ~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~q 729 (858)
T COG5215 650 CTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQ 729 (858)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 88888888999999999976 4558899999999999999986 78888899999999999999999999999886543
No 20
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.33 E-value=1.6e-05 Score=78.46 Aligned_cols=172 Identities=13% Similarity=0.202 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHHHHhhc-CCCChHHHHHhh-------hhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHH
Q 007670 19 RDTYSQAAKELDSIAATV-DPTLLPTFLSCI-------LSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSIT 88 (594)
Q Consensus 19 rDT~r~A~~eLD~LA~~L-ppe~lp~fLs~L-------~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Iv 88 (594)
=+...-|++.|..++..- +.+..+.|+.+| .....+..+.+-+.++.+++.++... .+.||++.++|.++
T Consensus 21 W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll 100 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLL 100 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 337788999999988877 443455554444 45677778889999999999998877 89999999999999
Q ss_pred hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--CCcc---hhHHHH
Q 007670 89 RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--DPDA---GKLGRM 163 (594)
Q Consensus 89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~--~~i~---~yL~~L 163 (594)
+++.|+...||++|..+|-.+..++ ....-++.+++.....+.++.+...++.+|..+++..+ .... ..++.+
T Consensus 101 ~~~~~~~~~i~~~a~~~L~~i~~~~--~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l 178 (228)
T PF12348_consen 101 KKLGDSKKFIREAANNALDAIIESC--SYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQL 178 (228)
T ss_dssp HGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHH
Confidence 9999999999999999999999998 31222545555555577888888899999999999988 2222 236789
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 164 EVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 164 ~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
.+-+.+++..++..++.++-.++..+...
T Consensus 179 ~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 179 VKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888877644
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.32 E-value=2.5e-05 Score=87.16 Aligned_cols=251 Identities=15% Similarity=0.182 Sum_probs=160.9
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHHHH
Q 007670 10 NGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIIN 85 (594)
Q Consensus 10 l~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkIL~ 85 (594)
+.||+. +++|....+.+.|+.+...+++.. ++-+...|...+.++++.+|.-+++.++.+++.. ....-+ ..+++
T Consensus 44 f~~L~~-~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 44 FDCLNT-SNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHhh-cChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 344442 467788888899999999998888 8999999999999999999999999999987655 222222 56899
Q ss_pred HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHh----HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH
Q 007670 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTM----LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG 161 (594)
Q Consensus 86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~----lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~ 161 (594)
.|+..|.|+|..|-.+|..+|..|+.+-. ....+ +.+-+..++...+..+...+.-++..+... .+...++.-
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~~ 199 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAVV 199 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 99999999999999999999999997652 21112 122223332333555554433332222211 122234444
Q ss_pred H--HHHHHHHHhcCCchhhHHHHHHHHHHHHhc-----------------------------------------------
Q 007670 162 R--MEVRLERLLKSEVFKAKAAGLVVVGSVIGS----------------------------------------------- 192 (594)
Q Consensus 162 ~--L~~RL~klL~s~~fkaK~alL~aIGSiA~a----------------------------------------------- 192 (594)
. +++.+++.|++++.-+|..++..++.+|..
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 3 666666666666666666666666665532
Q ss_pred C-cCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH-cC-Ccc----chhhhHHHH-HHHhcchh---H---HHH
Q 007670 193 G-AVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV-EK-DAV----PEFKGKCLK-IFESKRFD---K---MIE 258 (594)
Q Consensus 193 ~-~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a-~g-d~f----~py~~~~m~-sLEs~RfD---K---~i~ 258 (594)
. ......++.++..|.+++.+.|-..|..|.|+||.|+.. .| ..+ .+-...+|+ +....+-= = +++
T Consensus 280 ~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~ 359 (503)
T PF10508_consen 280 SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALH 359 (503)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 0 000112244555556666788999999999999999985 34 444 233344553 33333222 1 777
Q ss_pred HHhhcC
Q 007670 259 AWKQVP 264 (594)
Q Consensus 259 lWk~i~ 264 (594)
.+..|=
T Consensus 360 al~~il 365 (503)
T PF10508_consen 360 ALASIL 365 (503)
T ss_pred HHHHHH
Confidence 777774
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=2.9e-05 Score=86.47 Aligned_cols=256 Identities=15% Similarity=0.165 Sum_probs=191.2
Q ss_pred HHHHHHhhcC-CChh-HHHHHHHHHHHHHhhcCC--C-C--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccc
Q 007670 7 TSVNGLLNKL-SDRD-TYSQAAKELDSIAATVDP--T-L--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS 77 (594)
Q Consensus 7 ~rvl~~L~KL-sDrD-T~r~A~~eLD~LA~~Lpp--e-~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~is 77 (594)
..+..+|-|| +|-| +.+-|++.||.+.+.+.. . + ++.|++.|.+.+...+|..|..-+.-|-++=..- -+.
T Consensus 124 n~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~ 203 (675)
T KOG0212|consen 124 NEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMI 203 (675)
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHH
Confidence 4456677777 3555 889999999999999732 2 2 8999999999988889999999999999984433 566
Q ss_pred cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH----hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (594)
Q Consensus 78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~----~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~ 153 (594)
.|||.+++-+..-|.|+...||..|-.+++.+-..+...|... ...-|...+ +.+++-.|..|..=+..||.-.+
T Consensus 204 ~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l-~ss~~~iq~~al~Wi~efV~i~g 282 (675)
T KOG0212|consen 204 SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHL-QSSEPEIQLKALTWIQEFVKIPG 282 (675)
T ss_pred hcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccc-cCCcHHHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999999999999999888886555432 344444455 57789999999998999999888
Q ss_pred CCcchhHHHHHHHHHHHhcCCchh-hHHHHHHH---HHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007670 154 DPDAGKLGRMEVRLERLLKSEVFK-AKAAGLVV---VGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (594)
Q Consensus 154 ~~i~~yL~~L~~RL~klL~s~~fk-aK~alL~a---IGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~ 228 (594)
...++|+.+++..++.++.....+ +|...... +-++...+.. -.--+..+|..|..+|.++--++|.++.+=+-.
T Consensus 283 ~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 283 RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 888999999999999999877554 44443333 3333322211 113346899999999999999999999999998
Q ss_pred HHHHcC-Cccc---hhhhHHHHHHHhcchhH----HHHHHhhcC
Q 007670 229 LAVVEK-DAVP---EFKGKCLKIFESKRFDK----MIEAWKQVP 264 (594)
Q Consensus 229 IA~a~g-d~f~---py~~~~m~sLEs~RfDK----~i~lWk~i~ 264 (594)
+-.-.+ +.+- +.+.-+++.|.+ +-|. ++++-..|.
T Consensus 363 l~~~~p~ql~~h~~~if~tLL~tLsd-~sd~vvl~~L~lla~i~ 405 (675)
T KOG0212|consen 363 LYHKAPGQLLVHNDSIFLTLLKTLSD-RSDEVVLLALSLLASIC 405 (675)
T ss_pred HHhhCcchhhhhccHHHHHHHHhhcC-chhHHHHHHHHHHHHHh
Confidence 887654 4333 222333344432 3343 666666665
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.24 E-value=1.2e-05 Score=87.98 Aligned_cols=235 Identities=12% Similarity=0.115 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~ 100 (594)
..|++.=.|..++. -+++.+....+.|.....++++..|-.|++.|+.++.. ..++.+++.|.+.|.|+++.||+
T Consensus 58 ~Krl~yl~l~~~~~-~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~----~~~~~l~~~v~~ll~~~~~~VRk 132 (526)
T PF01602_consen 58 LKRLGYLYLSLYLH-EDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP----EMAEPLIPDVIKLLSDPSPYVRK 132 (526)
T ss_dssp HHHHHHHHHHHHTT-TSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH----HHHHHHHHHHHHHHHSSSHHHHH
T ss_pred HHHHHHHHHHHHhh-cchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc----chhhHHHHHHHHHhcCCchHHHH
Confidence 44555444444433 12333566667776667788888888888888887622 34577888888999999999999
Q ss_pred HHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHH
Q 007670 101 TCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180 (594)
Q Consensus 101 Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~ 180 (594)
+|+.++..+.....+.....+++.|...| .++++.|+.+|+.+|..+ ..-++.....++.+..+|.+++..++.-.+.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~ 210 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLL-SDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQI 210 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHT-THSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhc-cCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHH
Confidence 99999988888764321111456666655 778888888888888777 2111111256788888888888777777777
Q ss_pred HHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH---
Q 007670 181 AGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK--- 255 (594)
Q Consensus 181 alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK--- 255 (594)
.++.+++.++... .... ..+++.+..+|.+..+.++-.|+.++..+.... +.+......+++.|.+....=
T Consensus 211 ~il~~l~~~~~~~---~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~-~~~~~~~~~L~~lL~s~~~nvr~~ 286 (526)
T PF01602_consen 211 KILRLLRRYAPME---PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSP-ELLQKAINPLIKLLSSSDPNVRYI 286 (526)
T ss_dssp HHHHHHTTSTSSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH-HHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHhcccCC---hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcch-HHHHhhHHHHHHHhhcccchhehh
Confidence 7777766433221 1222 457788888888777887766666666443211 123334444556665333321
Q ss_pred HHHHHhhcCCC
Q 007670 256 MIEAWKQVPDL 266 (594)
Q Consensus 256 ~i~lWk~i~~v 266 (594)
+++.-..+...
T Consensus 287 ~L~~L~~l~~~ 297 (526)
T PF01602_consen 287 ALDSLSQLAQS 297 (526)
T ss_dssp HHHHHHHHCCH
T ss_pred HHHHHHHhhcc
Confidence 66666666544
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=3e-05 Score=86.28 Aligned_cols=212 Identities=17% Similarity=0.131 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHHHhhcC----CCChHHHHH-hhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhc
Q 007670 20 DTYSQAAKELDSIAATVD----PTLLPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR 92 (594)
Q Consensus 20 DT~r~A~~eLD~LA~~Lp----pe~lp~fLs-~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLk 92 (594)
+-++.|+.+|+.+++++- -++|.-+++ ...++.-++....||.+++.++.++-+- --.+|+.+||+=|+.-+.
T Consensus 15 ekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~ 94 (675)
T KOG0212|consen 15 EKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFS 94 (675)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhcc
Confidence 368899999999999982 333889999 5589999999999999988887764444 555699999999999999
Q ss_pred CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcc-h-hHHHHHHHH
Q 007670 93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDA-G-KLGRMEVRL 167 (594)
Q Consensus 93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~-yL~~L~~RL 167 (594)
|+|..||-=+|+++=.++.-. ++....++.-+|++|- .+.+.+|+.||=+ |++++.....+-. . .|+.++|-|
T Consensus 95 D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeL-LdRLikdIVte~~~tFsL~~~ipLL 172 (675)
T KOG0212|consen 95 DQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGGAEL-LDRLIKDIVTESASTFSLPEFIPLL 172 (675)
T ss_pred CccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccHHHH-HHHHHHHhccccccccCHHHHHHHH
Confidence 999999999999998888766 2334457777888774 5788889877666 9999877533322 1 355566555
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 168 ERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 168 ~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
-.-+.-.+..++..+++-|--+-.+.+. +..|++.+++-|-.+|.++.-++|..+=-+|+.+-...
T Consensus 173 ~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI 239 (675)
T KOG0212|consen 173 RERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI 239 (675)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 5555555666788899888876666544 35999999999999999999999988887787776654
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.21 E-value=4.6e-05 Score=95.82 Aligned_cols=227 Identities=16% Similarity=0.188 Sum_probs=168.2
Q ss_pred cCCChhHHHHHHHHHHHHHhh-------c-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccchH
Q 007670 15 KLSDRDTYSQAAKELDSIAAT-------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYIT 81 (594)
Q Consensus 15 KLsDrDT~r~A~~eLD~LA~~-------L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isphLp 81 (594)
...+.|.+.-|+..|..|+.+ + ....+|+|+.+|.. ++...|+.++.+|+.++.+. .+.. .
T Consensus 414 ~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s----~s~~iQ~~A~~~L~nLa~~ndenr~aIie--a 487 (2102)
T PLN03200 414 TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL----SSEQQQEYAVALLAILTDEVDESKWAITA--A 487 (2102)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCHHHHHHHHH--C
Confidence 345678888888888777743 2 23348888887763 56789999999999998655 2211 3
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc-hhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-AFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (594)
Q Consensus 82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~ 157 (594)
-.+|.+++.|+.++..+++.|+++|+.++.+-... ... -.++||++.| ...++.+|.-|+.+|..++...+..
T Consensus 488 GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~~d~~-- 564 (2102)
T PLN03200 488 GGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRTADAA-- 564 (2102)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhccchh--
Confidence 46788888999999999999999999999753211 111 1799999998 6678899999999999998865433
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc---CC--chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD---GS--GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 158 ~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~---~p--yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
.++.++.+|.+++.+.+..++.+||.+...+... .. -....++.|.+.|.++.-..++.|+.+|+.++..
T Consensus 565 -----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 565 -----TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred -----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 3366778899999899999999999987654221 11 1235789999999999999999999999999873
Q ss_pred cCC-----ccchhhhHHHHHHHhcchhH
Q 007670 233 EKD-----AVPEFKGKCLKIFESKRFDK 255 (594)
Q Consensus 233 ~gd-----~f~py~~~~m~sLEs~RfDK 255 (594)
-.+ ....-..+++..|.+..|+-
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v 667 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAV 667 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHH
Confidence 222 12233466778888777776
No 26
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.20 E-value=1.2e-05 Score=95.12 Aligned_cols=192 Identities=19% Similarity=0.210 Sum_probs=137.4
Q ss_pred hHHHHHhhhhcCCCCCC-cchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--
Q 007670 41 LPTFLSCILSTNSSDKP-GVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-- 117 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp-~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-- 117 (594)
...|++.|..++.+-+. ..|.+||.+|..|+..---..-|.+|+|+++-.+.||+..||-+|+.||..+-....+-+
T Consensus 420 a~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 420 AVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 44556666555555563 568899999888876554445699999999999999999999999999999887775422
Q ss_pred ----hHHhHHHHHHHHccC-CChhHHHHHHHHHHHHHhhc----------------CCC-----c----chhH---HHHH
Q 007670 118 ----FVTMLKLLSDALFTE-QDTNAQVGAALCLAATIDAA----------------QDP-----D----AGKL---GRME 164 (594)
Q Consensus 118 ----~~~~lkPL~eaL~~e-q~k~vQ~~Aa~ALaavvE~l----------------~~~-----i----~~yL---~~L~ 164 (594)
|.-|+-|-+..|..+ ....|-++=|.||+.+-+.+ .++ + ..++ ...+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V 579 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV 579 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence 344888888888766 45556667777777654432 111 1 1133 3344
Q ss_pred HH-HHHHhcCCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670 165 VR-LERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 165 ~R-L~klL~s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g 234 (594)
++ +..||..+..-+|.+++..|+-+-.= |++ ..-+-+++.|.-||.+.||.+|.|=.|.+.-++..+|
T Consensus 580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 44 45566666778999999998765421 222 2235678999999999999999999999998888776
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.18 E-value=5.1e-05 Score=95.48 Aligned_cols=232 Identities=15% Similarity=0.155 Sum_probs=175.7
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccc---hHHHHHHHHhh
Q 007670 17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPY---ITKIINSITRN 90 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isph---LpkIL~~Ivrr 90 (594)
+|...++.|+..|-.++..-+++++++++..+ .++++..+..+++.||.+.... .+... -...++.+++.
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LL----lsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L 617 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTADAATISQLTALL----LGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL 617 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhccchhHHHHHHHHh----cCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH
Confidence 56778999999999999887777788877664 4567788999999998885533 11110 13578999999
Q ss_pred hcCCChhHHHHHHHHHHhhchhhhcchhH--H--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch-hHHH-HH
Q 007670 91 FRDKNSALQATCISTVSSLSPRVGASAFV--T--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG-KLGR-ME 164 (594)
Q Consensus 91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~--~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~-yL~~-L~ 164 (594)
|+.++..+++-++++|+.++..-.+.+.. . .++||+..| ...+..+|..||.||..+..+..+.-.. ++.. .+
T Consensus 618 L~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV 696 (2102)
T PLN03200 618 LSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAI 696 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH-hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCH
Confidence 99999999999999999999866443321 1 899999999 5667778999999999999765443333 3433 78
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--Cccch
Q 007670 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPE 239 (594)
Q Consensus 165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g--d~f~p 239 (594)
+.|+++|++++..++..++.+++.++..+.. +.. ...++.|.++|.+..-..|+.|+-+|..++.... +.|..
T Consensus 697 ~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~--~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~ 774 (2102)
T PLN03200 697 KPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA--EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKD 774 (2102)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHh--cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 8899999999999999999999999976532 232 2458999999999888899999999999998643 44544
Q ss_pred hh------hHHHHHHHhcchhH
Q 007670 240 FK------GKCLKIFESKRFDK 255 (594)
Q Consensus 240 y~------~~~m~sLEs~RfDK 255 (594)
|. ..++..|++--+|-
T Consensus 775 ~~~~~g~v~~l~~~L~~~~~~~ 796 (2102)
T PLN03200 775 SVQCRGTVLALVDLLNSTDLDS 796 (2102)
T ss_pred HHHHhCcHHHHHHHHhcCCcch
Confidence 43 44455666666665
No 28
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=98.13 E-value=0.0002 Score=84.07 Aligned_cols=199 Identities=17% Similarity=0.176 Sum_probs=161.0
Q ss_pred CCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchh
Q 007670 37 DPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPR 112 (594)
Q Consensus 37 ppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~ 112 (594)
++.. ++-+-..+..-..+.||..|++++.-|--+.+.. ....+...+...+.-+++|.+..|-.-++..|+.+|.-
T Consensus 246 ~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 246 PRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred chhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 4444 5555556666688999999999999998887776 67778888888899999999999999999999999988
Q ss_pred hhcc--hhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670 113 VGAS--AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV 189 (594)
Q Consensus 113 l~~~--~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSi 189 (594)
+... ++.. +++.|++.+ ++..+.+-.++-.|++++++. -.|-++++-+..++++.+.++|..+..+.+--
T Consensus 326 lr~~~~~~~~~v~p~lld~l-kekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~ 398 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRL-KEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRK 398 (815)
T ss_pred cchhhHHHHHhhcchHHHHh-hhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 8543 2332 889999999 789999999999999999992 34778889999999999999999988877776
Q ss_pred HhcCc-C--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC-ccchhhh
Q 007670 190 IGSGA-V--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD-AVPEFKG 242 (594)
Q Consensus 190 A~a~~-~--~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd-~f~py~~ 242 (594)
...-+ . +..-...++|.+.....+.|=++|+||.++++.|..++|+ .|.-|..
T Consensus 399 ~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 399 LRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred HhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 65544 2 2355667788888888889999999999999999999994 5554443
No 29
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=3e-05 Score=86.37 Aligned_cols=242 Identities=16% Similarity=0.206 Sum_probs=162.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccc
Q 007670 7 TSVNGLLNKLSDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLS 77 (594)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~LA~~L--------ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~is 77 (594)
.+++++|.+=.+...+--|+-.|-.||..- +...+|.|+.++. ++...+|..|+-+||.++... -+.
T Consensus 112 ~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~----s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 112 PRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS----SPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc----CCcHHHHHHHHHHHhccccCChHHH
Confidence 455666665444456667777888888742 2333899998887 467789999999999996554 221
Q ss_pred cch--HHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhh-cchhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670 78 PYI--TKIINSITRNFRDKNS-ALQATCISTVSSLSPRVG-ASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (594)
Q Consensus 78 phL--pkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~-~~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~ 151 (594)
.|+ ..+|..+.+.|..++. ..++-+.|||..||..-- -+++.. -+.|.+.-|+...|..|..=||.||.-+.++
T Consensus 188 d~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred HHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 221 1234444555555554 344456789999999883 223322 2333333334788999999999999999998
Q ss_pred cCCCcch-hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCC--chHHHHHHHHhhhcC-CcHHHHHHHHHHHH
Q 007670 152 AQDPDAG-KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS--GLKGLVSCLLGFLSS-QDWAARKAAAEALW 227 (594)
Q Consensus 152 l~~~i~~-yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~p--yf~~lm~~L~e~L~s-eDw~lRKaAaDaLg 227 (594)
.++.+-- .-..+++||+++|.++..++...+|-+||-|+.......+ .-..++|+|..+|+. ..-..||.||=+|+
T Consensus 268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS 347 (514)
T KOG0166|consen 268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS 347 (514)
T ss_pred ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence 7776632 3345999999999999999998899999986654433321 112367889999984 44558999999999
Q ss_pred HHHHHc--------CCccchhhhHHHHHHHhcchhH
Q 007670 228 RLAVVE--------KDAVPEFKGKCLKIFESKRFDK 255 (594)
Q Consensus 228 ~IA~a~--------gd~f~py~~~~m~sLEs~RfDK 255 (594)
-|+.-- -..+. ..++..|++.-||=
T Consensus 348 NItAG~~~qiqaVida~l~---p~Li~~l~~~ef~~ 380 (514)
T KOG0166|consen 348 NITAGNQEQIQAVIDANLI---PVLINLLQTAEFDI 380 (514)
T ss_pred HhhcCCHHHHHHHHHcccH---HHHHHHHhccchHH
Confidence 988721 12333 44556666666665
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.12 E-value=0.00017 Score=80.55 Aligned_cols=215 Identities=14% Similarity=0.161 Sum_probs=149.0
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcC-CCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch
Q 007670 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVD-PTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI 80 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lp-pe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL 80 (594)
+|.+..|..|.. .+..--++.+|..-+..-+ -+. .+.++.|+... +...=..+...|..+-.......-+
T Consensus 3 ~~~~~~l~~l~~---~~~~~~~L~~l~~~~~~~~~l~~~~~~~lf~~L~~~----~~e~v~~~~~iL~~~l~~~~~~~l~ 75 (503)
T PF10508_consen 3 EWINELLEELSS---KAERLEALPELKTELSSSPFLERLPEPVLFDCLNTS----NREQVELICDILKRLLSALSPDSLL 75 (503)
T ss_pred hHHHHHHHHHhc---ccchHHHHHHHHHHHhhhhHHHhchHHHHHHHHhhc----ChHHHHHHHHHHHHHHhccCHHHHH
Confidence 344444444433 3444444555555444333 222 34577777743 3333345556666665555333348
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch----hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc
Q 007670 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (594)
Q Consensus 81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~----~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i 156 (594)
+.+.+++.++|.-|++.||.-|+.++++++.+-.... ...++..++..| .+.+..|...|+.+|..+...-
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~---- 150 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHP---- 150 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCc----
Confidence 9999999999999999999999999999987663211 112677777777 7889999999999999998742
Q ss_pred chhHHHH-----HHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670 157 AGKLGRM-----EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRL 229 (594)
Q Consensus 157 ~~yL~~L-----~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~I 229 (594)
+++..| ...|..++..++-.+|--++.++..++....+...+.. .+++.+...|.++|--+|..|+|.|+.|
T Consensus 151 -~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 151 -EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSEL 229 (503)
T ss_pred -hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence 233333 78888888885555666688898888876655443333 3889999999999999999999999999
Q ss_pred HH
Q 007670 230 AV 231 (594)
Q Consensus 230 A~ 231 (594)
|.
T Consensus 230 a~ 231 (503)
T PF10508_consen 230 AE 231 (503)
T ss_pred Hc
Confidence 98
No 31
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.11 E-value=1.8e-05 Score=66.22 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=70.6
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
|+.|+..|.. ++++.+|.+++.+||.+ .-++.++.+++.++|+++.||.+++.+||.+...-
T Consensus 1 i~~L~~~l~~---~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~~~------- 62 (88)
T PF13646_consen 1 IPALLQLLQN---DPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIGDPE------- 62 (88)
T ss_dssp HHHHHHHHHT---SSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHHHH-------
T ss_pred CHHHHHHHhc---CCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHH-------
Confidence 4566666643 67899999999999933 34578999999999999999999999999996433
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHH
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLA 146 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALa 146 (594)
.+..|.+.|.++.+..++..|+.+|+
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 77888888866678888988888874
No 32
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=2.9e-05 Score=88.35 Aligned_cols=185 Identities=19% Similarity=0.236 Sum_probs=131.4
Q ss_pred CCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670 52 NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (594)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL 129 (594)
.++.+|++||-||.+|=-++.-+ .+.|-.|++ +.+|.|||++|..|++..+--||..-.+. ..-|-|+|.-|
T Consensus 153 L~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL----~EkLeDpDp~V~SAAV~VICELArKnPkn--yL~LAP~ffkl 226 (877)
T KOG1059|consen 153 LNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRL----VEKLEDPDPSVVSAAVSVICELARKNPQN--YLQLAPLFYKL 226 (877)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHH----HHhccCCCchHHHHHHHHHHHHHhhCCcc--cccccHHHHHH
Confidence 45789999999999998888777 888887764 68999999999999887666665544221 22456666666
Q ss_pred ccCCChh-HHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhcC---c--CcCCchHH
Q 007670 130 FTEQDTN-AQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSG---A--VDGSGLKG 202 (594)
Q Consensus 130 ~~eq~k~-vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~klL~s~~fkaK~alL~aIGSiA~a~---~--~~~pyf~~ 202 (594)
+....-| +-+. |-++.-++ .++.|.|++ |++.|..++++- .|...++.||-.|+.+. | .......-
T Consensus 227 lttSsNNWmLIK----iiKLF~aL-tplEPRLgKKLieplt~li~sT--~AmSLlYECvNTVVa~s~s~g~~d~~asiqL 299 (877)
T KOG1059|consen 227 LVTSSNNWVLIK----LLKLFAAL-TPLEPRLGKKLIEPITELMEST--VAMSLLYECVNTVVAVSMSSGMSDHSASIQL 299 (877)
T ss_pred HhccCCCeehHH----HHHHHhhc-cccCchhhhhhhhHHHHHHHhh--HHHHHHHHHHHHheeehhccCCCCcHHHHHH
Confidence 6433222 2211 22222222 233466655 999999999555 48889999999988662 1 11233444
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670 203 LVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (594)
Q Consensus 203 lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE 249 (594)
.++.|..|+.++|..++=.++-||+.|+-.+...++.+++=+++.|.
T Consensus 300 CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~ 346 (877)
T KOG1059|consen 300 CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLD 346 (877)
T ss_pred HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhc
Confidence 67888889999999999999999999999988888877766667664
No 33
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.08 E-value=0.00028 Score=76.87 Aligned_cols=204 Identities=16% Similarity=0.164 Sum_probs=164.0
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh--cccc
Q 007670 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH--NLSP 78 (594)
Q Consensus 3 ~~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h--~isp 78 (594)
+++.++++.....-.|..++..+++.|=.|+.-++.+. +..+|..+.+.. ....+..|..++..+.-+..+- --.|
T Consensus 188 ~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~ 267 (415)
T PF12460_consen 188 EELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP 267 (415)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence 46778888888888888888889999999999987776 888888887776 6677889999999998887777 5567
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc---------------ch-hHHhHHHHHHHHccCCChhHHHHHH
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---------------SA-FVTMLKLLSDALFTEQDTNAQVGAA 142 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~---------------~~-~~~~lkPL~eaL~~eq~k~vQ~~Aa 142 (594)
.-.+++..++..|.| +.+...++.+++.|.....+ |- |..++++|++.. .+.+......-.
T Consensus 268 ~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~-~~~~~~~k~~yL 344 (415)
T PF12460_consen 268 LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF-KEADDEIKSNYL 344 (415)
T ss_pred hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH-hhcChhhHHHHH
Confidence 788888888999977 77788899999998877432 11 233677777777 444444666778
Q ss_pred HHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHh
Q 007670 143 LCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLG 209 (594)
Q Consensus 143 ~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e 209 (594)
.||.-++.+++..+ .+++++|+|-|++.|+.++..++.+.|.++-.+..-..+ +.+|+..+|+.|..
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 89999999999776 689999999999999999988999999988888855544 35899989988864
No 34
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0011 Score=79.25 Aligned_cols=227 Identities=18% Similarity=0.181 Sum_probs=170.4
Q ss_pred HHHHHHHHH---HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh--h--ccccchHHHHHHHHhhhcCCC
Q 007670 23 SQAAKELDS---IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--H--NLSPYITKIINSITRNFRDKN 95 (594)
Q Consensus 23 r~A~~eLD~---LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~--h--~isphLpkIL~~IvrrLkD~D 95 (594)
...++.||. ||...+.+++..++.....+.++..+.++|-+.++|+.+++. + ++..++.-|...+...+++..
T Consensus 631 ~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~ 710 (1176)
T KOG1248|consen 631 FKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSS 710 (1176)
T ss_pred HHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccc
Confidence 344455554 566667777888887778888888889999999999999877 3 888999999999999999999
Q ss_pred hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc--cCCChhHHHHHHHHHHHHH--hhc----CCCcchhHHHHHHHH
Q 007670 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALF--TEQDTNAQVGAALCLAATI--DAA----QDPDAGKLGRMEVRL 167 (594)
Q Consensus 96 s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~--~eq~k~vQ~~Aa~ALaavv--E~l----~~~i~~yL~~L~~RL 167 (594)
..+|...+.+|-.|-+.+...-...+.+-+-|+++ .+.+-..-..|+-||--+. ... .++....+...+.-|
T Consensus 711 ~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~I 790 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSII 790 (1176)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHH
Confidence 99999999999988887742222335666666665 3344445557777777766 332 222234666666666
Q ss_pred HHHhcCCchhhHHHHHHHHHHHHhcCcCc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHH
Q 007670 168 ERLLKSEVFKAKAAGLVVVGSVIGSGAVD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKC 244 (594)
Q Consensus 168 ~klL~s~~fkaK~alL~aIGSiA~a~~~~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~ 244 (594)
...|-.+..+.++.-|-+|+.+..--+.. .+++..++..+..||.++--+.|++|+..+..+..... ..+.||.+.+
T Consensus 791 sagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~L 870 (1176)
T KOG1248|consen 791 SAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEEL 870 (1176)
T ss_pred HhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH
Confidence 66666666665555577888877554443 39999999999999999999999999999999988877 6899998888
Q ss_pred HHHHH
Q 007670 245 LKIFE 249 (594)
Q Consensus 245 m~sLE 249 (594)
|-++=
T Consensus 871 L~sll 875 (1176)
T KOG1248|consen 871 LPSLL 875 (1176)
T ss_pred HHHHH
Confidence 85443
No 35
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.96 E-value=0.00053 Score=80.25 Aligned_cols=245 Identities=17% Similarity=0.247 Sum_probs=175.7
Q ss_pred hhHHHHHHHHHHHHHhhcCC--------CChHHHHHhhhhcCCC--CCCcchHHHHHHHHHHHhhh--ccccchHHHHHH
Q 007670 19 RDTYSQAAKELDSIAATVDP--------TLLPTFLSCILSTNSS--DKPGVRKECIHVIATLSNSH--NLSPYITKIINS 86 (594)
Q Consensus 19 rDT~r~A~~eLD~LA~~Lpp--------e~lp~fLs~L~e~~ss--~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~ 86 (594)
||+..++ |.....++|| ..++.|++.+.+++.- +....|=+++-.|+.+-.-+ ++-++=..|+-+
T Consensus 102 rdissi~---Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~ 178 (1233)
T KOG1824|consen 102 RDISSIG---LKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKC 178 (1233)
T ss_pred ccHHHHH---HHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHH
Confidence 4455554 4555666665 3388889988887554 44567888888888875555 777777888889
Q ss_pred HHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHH-HHHHHHHHHHhhcCCCcchhHHHHHH
Q 007670 87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQV-GAALCLAATIDAAQDPDAGKLGRMEV 165 (594)
Q Consensus 87 IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~-~Aa~ALaavvE~l~~~i~~yL~~L~~ 165 (594)
+.-.|.-+-..||+=++.++|.++..+.+.-+.-+..-|+..| +...+..+. .-..||++++-.++.....++++++|
T Consensus 179 l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L-~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp 257 (1233)
T KOG1824|consen 179 LLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGL-SNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVP 257 (1233)
T ss_pred HhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhH
Confidence 9989999999999999999999999984332222444444444 333334443 67889999999999988889999999
Q ss_pred HHHHHh---cCCchhhHHHHHHHHHHHH-hcCcCcCCchHHHHHHHHhhhcC----------------------------
Q 007670 166 RLERLL---KSEVFKAKAAGLVVVGSVI-GSGAVDGSGLKGLVSCLLGFLSS---------------------------- 213 (594)
Q Consensus 166 RL~klL---~s~~fkaK~alL~aIGSiA-~a~~~~~pyf~~lm~~L~e~L~s---------------------------- 213 (594)
-+.... +.++=..+...|.++++.. ....+..||.+.++..+.+|++-
T Consensus 258 ~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de 337 (1233)
T KOG1824|consen 258 LVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE 337 (1233)
T ss_pred HHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc
Confidence 888888 6667778999999999987 45566789999999999988751
Q ss_pred ----C--cHHHHHHHHHHHHHHHHHcCCccchhhhHH----H----HHHHhcchhH---HHHHHhhcCCCC
Q 007670 214 ----Q--DWAARKAAAEALWRLAVVEKDAVPEFKGKC----L----KIFESKRFDK---MIEAWKQVPDLS 267 (594)
Q Consensus 214 ----e--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~----m----~sLEs~RfDK---~i~lWk~i~~v~ 267 (594)
+ .|-+|.||+-+|..+-..-.|.+..+...+ + .-+|+-+.|= =+.+.++++.+-
T Consensus 338 YsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~ 408 (1233)
T KOG1824|consen 338 YSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVI 408 (1233)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCc
Confidence 0 199999999999988775444444333222 2 1334444444 456677776554
No 36
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00028 Score=85.63 Aligned_cols=215 Identities=18% Similarity=0.189 Sum_probs=153.0
Q ss_pred HHHHHHHHhhc-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHH
Q 007670 26 AKELDSIAATV-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATC 102 (594)
Q Consensus 26 ~~eLD~LA~~L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac 102 (594)
.+||=.||..| .|+-+--||+.-- .+--|.-||.+--=||++++.. .+.||+++++|-+.|-=-|||..|++|-
T Consensus 942 YKELc~LASdl~qPdLVYKFM~LAn---h~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM 1018 (1702)
T KOG0915|consen 942 YKELCNLASDLGQPDLVYKFMQLAN---HNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAM 1018 (1702)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhh---hhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHH
Confidence 57999999999 5666888887653 3456889999999999998888 9999999999999999999999999886
Q ss_pred HHHHHhhchhhhcchhHH-hHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHhcCCchh
Q 007670 103 ISTVSSLSPRVGASAFVT-MLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFK 177 (594)
Q Consensus 103 ~~ALG~LAe~l~~~~~~~-~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~klL~s~~fk 177 (594)
-.--+.|-..- ...+. |++=+++-|+ +...=-|-.++|+||.-++++=+-+ ..+.+|+|-.-+++..+.=.=-
T Consensus 1019 ~sIW~~Li~D~--k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEs 1096 (1702)
T KOG0915|consen 1019 TSIWNALITDS--KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKES 1096 (1702)
T ss_pred HHHHHHhccCh--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544332 11111 4444444443 4555668889999999999985432 3678889888888888432222
Q ss_pred hHHH---HHHHHHHHH-hcC----cCc-CCchHHHHHHHHhh-hcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670 178 AKAA---GLVVVGSVI-GSG----AVD-GSGLKGLVSCLLGF-LSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (594)
Q Consensus 178 aK~a---lL~aIGSiA-~a~----~~~-~pyf~~lm~~L~e~-L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m 245 (594)
++.| +..+|+.+. ... +.. ...++.++|+|.+- ..+.--++|+.++-+|..|+-..|..+.||...++
T Consensus 1097 VR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LI 1174 (1702)
T KOG0915|consen 1097 VREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLI 1174 (1702)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHH
Confidence 4444 334444433 221 111 24455555555443 23667899999999999999999988889887666
No 37
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.00026 Score=79.09 Aligned_cols=209 Identities=12% Similarity=0.134 Sum_probs=156.8
Q ss_pred CChhHHHHHHHHHHHHHhhc--CC------CC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccchHH
Q 007670 17 SDRDTYSQAAKELDSIAATV--DP------TL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYITK 82 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~L--pp------e~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isphLpk 82 (594)
+|.+.+..|++.+..+...- || .. +|.|..|+. .+.+|..+.++--+|..+|.|- .+.. ..
T Consensus 78 ~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~---~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~--ag 152 (514)
T KOG0166|consen 78 DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLS---RDDNPTLQFEAAWALTNIASGTSEQTKVVVD--AG 152 (514)
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHc---cCCChhHHHHHHHHHHHHhcCchhhcccccc--CC
Confidence 35556677777777755443 21 13 777777776 3456788999999999998866 2222 24
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH----HhHHHHHHHHccCCCh-hHHHHHHHHHHHHHhhcC-CCc
Q 007670 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQDT-NAQVGAALCLAATIDAAQ-DPD 156 (594)
Q Consensus 83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~----~~lkPL~eaL~~eq~k-~vQ~~Aa~ALaavvE~l~-~~i 156 (594)
-+|..++.|..|+..||+-|++|||.+|.+...-... ..|.||+..|. ..++ ..-..+.-+|-.+|.+-. .+.
T Consensus 153 avp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~-~~~~~~~lRn~tW~LsNlcrgk~P~P~ 231 (514)
T KOG0166|consen 153 AVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN-KSDKLSMLRNATWTLSNLCRGKNPSPP 231 (514)
T ss_pred chHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc-cccchHHHHHHHHHHHHHHcCCCCCCc
Confidence 5677899999999999999999999999988543222 28999999994 3333 344578999999999974 444
Q ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
...+..++|=|.++|.+.+..+..-+.-||+-++-...+..+++ ..++|.|++.|...+-.++-.|+-++|-|++
T Consensus 232 ~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 232 FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 67889999999999999998887777777777664443332222 2368999999999999999999999999876
No 38
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.0004 Score=76.74 Aligned_cols=197 Identities=21% Similarity=0.242 Sum_probs=155.4
Q ss_pred hcCCChhHHHHHHHHHHH-HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccc--cchHHHHHHHHhh
Q 007670 14 NKLSDRDTYSQAAKELDS-IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLS--PYITKIINSITRN 90 (594)
Q Consensus 14 ~KLsDrDT~r~A~~eLD~-LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~is--phLpkIL~~Ivrr 90 (594)
+-|+|.|++++.+..|-. |+.+=++ .++-+|.++.+.+.+.++..|-..+--|+-+...-.+- +.|...+-++-.+
T Consensus 188 ~qls~~~~h~~g~trlqr~m~~~~~~-~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~k 266 (533)
T KOG2032|consen 188 SQLSDNDIHRVGLTRLQRFMACVQDL-EMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANK 266 (533)
T ss_pred hhcccCcccHHHHHHHHHHHHhhCCc-cHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHh
Confidence 457888999999998887 5554343 47888888888899999999988877777766555444 6799999999999
Q ss_pred hcCCChhHHHHHHHHHHhhchhhhcchhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHH
Q 007670 91 FRDKNSALQATCISTVSSLSPRVGASAFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVR 166 (594)
Q Consensus 91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~R 166 (594)
.+||+..+|.-|+-.||.+++.+.+.... ..+--++-.|.++.++.||--|..||..++|-+... ..+|+-.+--|
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 99999999999999999999997543311 255556666666778999999999999999997544 47899999999
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhc-CcCcC-CchHHHHHHHHhhh
Q 007670 167 LERLLKSEVFKAKAAGLVVVGSVIGS-GAVDG-SGLKGLVSCLLGFL 211 (594)
Q Consensus 167 L~klL~s~~fkaK~alL~aIGSiA~a-~~~~~-pyf~~lm~~L~e~L 211 (594)
+..++++..-+++.+.+.+.|.++.. |+.-. -+.+++...+..+|
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll 393 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL 393 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce
Confidence 99999999999999999999998854 33332 34444555666664
No 39
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.84 E-value=0.00098 Score=72.64 Aligned_cols=223 Identities=16% Similarity=0.170 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHhhcCCCC-hHH---HHHhhhhc-CCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhh-cCCCh
Q 007670 23 SQAAKELDSIAATVDPTL-LPT---FLSCILST-NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNF-RDKNS 96 (594)
Q Consensus 23 r~A~~eLD~LA~~Lppe~-lp~---fLs~L~e~-~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrL-kD~Ds 96 (594)
+--+-.+-.+...|+++. +|- +++.+.+. ..+.++..|..+..+++.++-=+.-...+..++..+...+ ...++
T Consensus 165 ~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~ 244 (415)
T PF12460_consen 165 SRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDS 244 (415)
T ss_pred ccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCc
Confidence 333444555666777666 443 44444333 4455589999999999999877633346777777777766 66667
Q ss_pred hHHHHHHHHHHhhchhhh-c-chhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-------cc------hhH
Q 007670 97 ALQATCISTVSSLSPRVG-A-SAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-------DA------GKL 160 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~-~-~~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-------i~------~yL 160 (594)
..|..+...+.-++.-+. + .+.. .++.-|++.| + ++.+-..||-++.-++.-.++. .+ -++
T Consensus 245 ~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL-~--~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F 321 (415)
T PF12460_consen 245 ELRPQALEILIWITKALVMRGHPLATELLDKLLELL-S--SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF 321 (415)
T ss_pred chhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh-C--ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH
Confidence 788888888877776664 2 2333 3777777777 3 3556667777777776652211 11 134
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh-cCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccc
Q 007670 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238 (594)
Q Consensus 161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~-a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~ 238 (594)
..++|+|.+.++..+-..|...+.|++.+.. +.... .++++.++|.|.+.|..+|..+|.+++++|..+.....+.+.
T Consensus 322 ~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 322 TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 6688899999888776689999999999884 44443 499999999999999999999999999999999998888999
Q ss_pred hhhhHHHHHH
Q 007670 239 EFKGKCLKIF 248 (594)
Q Consensus 239 py~~~~m~sL 248 (594)
+|...++..|
T Consensus 402 ~hl~sLI~~L 411 (415)
T PF12460_consen 402 EHLSSLIPRL 411 (415)
T ss_pred HHHHHHHHHH
Confidence 9988888654
No 40
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.83 E-value=5.2e-05 Score=65.55 Aligned_cols=106 Identities=14% Similarity=0.245 Sum_probs=81.1
Q ss_pred ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchH-HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc
Q 007670 40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (594)
Q Consensus 40 ~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLp-kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~ 116 (594)
.++.++..+.+. ++..|+.++.+|+.++... .....+. .+++.+++.|.|+++.|+..|+.+|+.|+..-...
T Consensus 8 ~i~~l~~~l~~~----~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLSSS----DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHHcC----CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 377778877643 4889999999999998763 2223334 78888999999999999999999999999876322
Q ss_pred hhH--H--hHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670 117 AFV--T--MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (594)
Q Consensus 117 ~~~--~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE 150 (594)
... . +++-|+..| ++.+..++..|+.+|..++|
T Consensus 84 ~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 211 1 566677766 66688899999999988764
No 41
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.80 E-value=0.00064 Score=70.93 Aligned_cols=58 Identities=26% Similarity=0.221 Sum_probs=38.0
Q ss_pred HHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 167 LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 167 L~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
+...+..+.--++.++..++|.+..-. ..+.+.+...+.+++|.+|+.++.+||.+..
T Consensus 185 l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 185 LIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 444454444455566665665433111 4566788888888999999999998887743
No 42
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.76 E-value=0.00037 Score=78.62 Aligned_cols=219 Identities=16% Similarity=0.111 Sum_probs=145.2
Q ss_pred HhhcCCChh--HHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCcchHHHHHHHHHH--HhhhccccchHH
Q 007670 12 LLNKLSDRD--TYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSHNLSPYITK 82 (594)
Q Consensus 12 ~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~-----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl--ae~h~isphLpk 82 (594)
+|+-++|.- -.++++...+.+...|+-.. ...++..|+-++++++... +--+-+|+++ +-+....|||+.
T Consensus 526 il~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~-~~il~~f~tv~vsl~~r~kp~l~~ 604 (975)
T COG5181 526 ILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTV-GLILPCFSTVLVSLEFRGKPHLSM 604 (975)
T ss_pred HHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccc-cEEEecccceeeehhhccCcchHH
Confidence 445555433 24456666677776665222 4455555655555554332 2334556664 333388999999
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH---H-hHHHHHHHHccCCChhHHH---HHHHHHHHHHhhcCCC
Q 007670 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV---T-MLKLLSDALFTEQDTNAQV---GAALCLAATIDAAQDP 155 (594)
Q Consensus 83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~-~lkPL~eaL~~eq~k~vQ~---~Aa~ALaavvE~l~~~ 155 (594)
|++.|.++|+.+-+-||.-+++.+|.|+--+-...+. . +=.-|.|.| |+..|.+-. +|..|+-.+..-- .
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~--~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENL-GEDYPEVLGSILKAICSIYSVHRFR--S 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhc-CcccHHHHHHHHHHHHHHhhhhccc--c
Confidence 9999999999999999999999999999887432221 2 334466777 788888775 5555555554431 1
Q ss_pred cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~--lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
.-|-...|+|+|.-.|++.+-|+.+-.+..+|.|+.-+.+..+.=+| +-=-|.+.|.+-.-..|.+|.+++|.|+.++
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai 761 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI 761 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence 11233456667777899999998888888899888555443221111 2233566677777889999999999999998
Q ss_pred C
Q 007670 234 K 234 (594)
Q Consensus 234 g 234 (594)
|
T Consensus 762 G 762 (975)
T COG5181 762 G 762 (975)
T ss_pred C
Confidence 8
No 43
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.75 E-value=0.00043 Score=66.95 Aligned_cols=137 Identities=14% Similarity=0.202 Sum_probs=93.8
Q ss_pred CCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCC
Q 007670 56 KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ 133 (594)
Q Consensus 56 kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq 133 (594)
+|.+|--++.++|-+|--| ++ ++.++.+...|+|+++.||..|+..|..|...-.-.....++--++..| .|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l-~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLL-VDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHH-cCC
Confidence 4678999999999998888 54 4556677799999999999999999998764421111222445555555 788
Q ss_pred ChhHHHHHHHHHHHHHhhc-CCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc
Q 007670 134 DTNAQVGAALCLAATIDAA-QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS 212 (594)
Q Consensus 134 ~k~vQ~~Aa~ALaavvE~l-~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~ 212 (594)
++.++..|..++..+.... +..+...++.++-.|-....++.+ +.....-+..++..|.+++.
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~----------------~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVY----------------GPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccc----------------cccCHHHHHHHHHHHHHHcC
Confidence 9999999999999998874 333455666666666655544433 11112345566666666666
Q ss_pred C
Q 007670 213 S 213 (594)
Q Consensus 213 s 213 (594)
.
T Consensus 140 ~ 140 (178)
T PF12717_consen 140 K 140 (178)
T ss_pred c
Confidence 3
No 44
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.0013 Score=77.34 Aligned_cols=184 Identities=17% Similarity=0.209 Sum_probs=130.9
Q ss_pred HHHHHH-HHHHhhcCCCChHHHHHhhhhcCC--------CCCCcchHHHHHHHHHHHhhh-cccc---chHHHH-HHHHh
Q 007670 24 QAAKEL-DSIAATVDPTLLPTFLSCILSTNS--------SDKPGVRKECIHVIATLSNSH-NLSP---YITKII-NSITR 89 (594)
Q Consensus 24 ~A~~eL-D~LA~~Lppe~lp~fLs~L~e~~s--------s~kp~~RKaaI~lLGvlae~h-~isp---hLpkIL-~~Ivr 89 (594)
.|+..+ -.++.-=-.+.||.+|+.+.+-+. ..++..+..|++.+|.||+.- --+| +|+.|+ ++|.=
T Consensus 390 ~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP 469 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFP 469 (1010)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhH
Confidence 344443 344444446667777777655433 344556677999999999766 3344 577665 47788
Q ss_pred hhcCCChhHHHHHHHHHHhhch-hhhcch-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC---cchhHHHHH
Q 007670 90 NFRDKNSALQATCISTVSSLSP-RVGASA-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP---DAGKLGRME 164 (594)
Q Consensus 90 rLkD~Ds~VR~Ac~~ALG~LAe-~l~~~~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~---i~~yL~~L~ 164 (594)
.+++|---+|.=+|+.++++++ ...++. +...+.-....|.++++-.|+.-||.||..+|.+.... +.++++.+|
T Consensus 470 ~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~m 549 (1010)
T KOG1991|consen 470 EFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIM 549 (1010)
T ss_pred hhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHH
Confidence 8999999999999999999994 443333 33377777778877889999999999999999997643 578999999
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhh
Q 007670 165 VRLERLLKSEVFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGF 210 (594)
Q Consensus 165 ~RL~klL~s~~fkaK~alL~aIGSiA~-a~~~~~pyf~~lm~~L~e~ 210 (594)
+.|+++.+.=.... +..++-+++. =+.+..||...+++.|.+.
T Consensus 550 q~lL~L~ne~End~---Lt~vme~iV~~fseElsPfA~eL~q~La~~ 593 (1010)
T KOG1991|consen 550 QELLKLSNEVENDD---LTNVMEKIVCKFSEELSPFAVELCQNLAET 593 (1010)
T ss_pred HHHHHHHHhcchhH---HHHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 99999996543332 4445555552 2445569988888888764
No 45
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.68 E-value=0.00035 Score=58.42 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=66.6
Q ss_pred HHHHHhhh-cCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH
Q 007670 84 INSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (594)
Q Consensus 84 L~~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~ 162 (594)
|+.+++.| +|+++.||..++.+||.+...- .++.|++.| .+.++.++..|+.+|..+- -+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~-------~~~~L~~~l-~d~~~~vr~~a~~aL~~i~----------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPE-------AIPALIELL-KDEDPMVRRAAARALGRIG----------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHH-------HHHHHHHHH-TSSSHHHHHHHHHHHHCCH----------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHh-------HHHHHHHHH-cCCCHHHHHHHHHHHHHhC----------CHH
Confidence 57788888 9999999999999999665443 677788877 7899999999999998763 245
Q ss_pred HHHHHHHHhcCC-chhhHHHHHHHHH
Q 007670 163 MEVRLERLLKSE-VFKAKAAGLVVVG 187 (594)
Q Consensus 163 L~~RL~klL~s~-~fkaK~alL~aIG 187 (594)
.++.|.+++.++ ...++.+++.++|
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 666777777665 5556777777665
No 46
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.67 E-value=0.0014 Score=76.80 Aligned_cols=244 Identities=16% Similarity=0.175 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHhhcC---CCChHHHHHhhhhc--CCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhc
Q 007670 21 TYSQAAKELDSIAATVD---PTLLPTFLSCILST--NSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFR 92 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lp---pe~lp~fLs~L~e~--~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLk 92 (594)
|...++..|-.++..+| .+.++.+++-|.-. +.+.-...++.++--+-.+-..| -+.||++.|.|.++-...
T Consensus 451 t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~ 530 (1233)
T KOG1824|consen 451 TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG 530 (1233)
T ss_pred chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc
Confidence 88888999999999987 23344444444222 22223346666665554443344 889999999999999999
Q ss_pred CCChhHHHHHHHHHHhhchhhhc-ch---h--HHhHHHHHHHHc-----cCCChhHHHHHHHHHHHHHhhcCCCcchhHH
Q 007670 93 DKNSALQATCISTVSSLSPRVGA-SA---F--VTMLKLLSDALF-----TEQDTNAQVGAALCLAATIDAAQDPDAGKLG 161 (594)
Q Consensus 93 D~Ds~VR~Ac~~ALG~LAe~l~~-~~---~--~~~lkPL~eaL~-----~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~ 161 (594)
||=..|-.-++-+.++|+..+-. ++ + ..++++++...+ .+.|..|-.+|..|+--+|-+.+|....-|+
T Consensus 531 d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~ 610 (1233)
T KOG1824|consen 531 DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELP 610 (1233)
T ss_pred CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 99999988888899999988853 12 2 238888887765 4779999999999999999888877666667
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccch
Q 007670 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPE 239 (594)
Q Consensus 162 ~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~p 239 (594)
..++-|++-|.+.- .+-+++-|+.-||.++=.+ .|.+..+++.|..|+......+|-+...++-.+....++.+..
T Consensus 611 ~~L~il~eRl~nEi--TRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~ 688 (1233)
T KOG1824|consen 611 RTLPILLERLGNEI--TRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA 688 (1233)
T ss_pred HHHHHHHHHHhchh--HHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 76666777676553 3334445555566555444 3999999999999999999999999999999999999999998
Q ss_pred hhhHHH-HHHHhc--chhH-----HHHHHhhcCCC
Q 007670 240 FKGKCL-KIFESK--RFDK-----MIEAWKQVPDL 266 (594)
Q Consensus 240 y~~~~m-~sLEs~--RfDK-----~i~lWk~i~~v 266 (594)
+.-+++ .=+-.. --|+ |+.+.+.+..+
T Consensus 689 ~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 689 ELLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 865554 111111 1133 77777766655
No 47
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.67 E-value=0.00014 Score=62.85 Aligned_cols=109 Identities=28% Similarity=0.185 Sum_probs=83.1
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-C
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-S 198 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-p 198 (594)
++++|++.| .+.+..+...|+.||..+....++....++. .+++.|.++|++++.+++..++.+++.++....... -
T Consensus 8 ~i~~l~~~l-~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 8 GLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred ChHHHHHHH-HcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 566777766 4566778888888888888764333333444 588889999999999999999999999986553322 1
Q ss_pred ch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 199 GL-KGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 199 yf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
+. ..+++.|.++|...+..+|..|+.+|..|+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 12 236899999999999999999999999876
No 48
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=97.61 E-value=0.0006 Score=67.17 Aligned_cols=106 Identities=18% Similarity=0.240 Sum_probs=85.2
Q ss_pred hhhcCCChhHHHHHHHHHHhhchhhhc------------c---hhHH--------hHHHHHHHHccCCChhHHHHHHHHH
Q 007670 89 RNFRDKNSALQATCISTVSSLSPRVGA------------S---AFVT--------MLKLLSDALFTEQDTNAQVGAALCL 145 (594)
Q Consensus 89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~------------~---~~~~--------~lkPL~eaL~~eq~k~vQ~~Aa~AL 145 (594)
-.++||++.||.|++.++..|=+..-. . +++. +=.=|+-+|..|++..+....+-||
T Consensus 47 ~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~l 126 (182)
T PF13251_consen 47 CILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCL 126 (182)
T ss_pred HHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 457899999999999999998766521 0 1211 3344555555788888999999999
Q ss_pred HHHHhhcCCCc--chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc
Q 007670 146 AATIDAAQDPD--AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA 194 (594)
Q Consensus 146 aavvE~l~~~i--~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~ 194 (594)
+.+|++.++.- .+++++++..+..++.+.+..++.+.+.++|.++++..
T Consensus 127 a~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 127 AVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 99999998774 56899999999999999999999999999999987653
No 49
>PTZ00429 beta-adaptin; Provisional
Probab=97.47 E-value=0.011 Score=69.56 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=95.4
Q ss_pred CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc
Q 007670 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (594)
Q Consensus 38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~ 116 (594)
|+-++.++..|.....+.+|++||.|++++.-+-... -+. .-..+++.+.+.|.|+|+.|...|+.+|-.+.+...+.
T Consensus 135 ~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv-~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~ 213 (746)
T PTZ00429 135 SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLF-YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK 213 (746)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccc-cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence 3335555555555555566666666666665553322 110 01123344444556666666656555555554433110
Q ss_pred --hhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc
Q 007670 117 --AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA 194 (594)
Q Consensus 117 --~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~ 194 (594)
.....+.-|+..| .+-+.-.|. +.|..+...-+.. ..-...++.++...|.|.+. +.+++|+..+..-..
T Consensus 214 l~l~~~~~~~Ll~~L-~e~~EW~Qi---~IL~lL~~y~P~~-~~e~~~il~~l~~~Lq~~N~---AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 214 IESSNEWVNRLVYHL-PECNEWGQL---YILELLAAQRPSD-KESAETLLTRVLPRMSHQNP---AVVMGAIKVVANLAS 285 (746)
T ss_pred hHHHHHHHHHHHHHh-hcCChHHHH---HHHHHHHhcCCCC-cHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhcC
Confidence 0011233333333 333444443 3333332221111 12234677777777777663 346666666554332
Q ss_pred Cc-CCchHHHHHHHHh---hhcCCcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670 195 VD-GSGLKGLVSCLLG---FLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (594)
Q Consensus 195 ~~-~pyf~~lm~~L~e---~L~seDw~lRKaAaDaLg~IA~a~gd~f~py 240 (594)
.. ......++..|.. +|.+.+-.+|=.++..|..|+......|.++
T Consensus 286 ~~~~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf~~~ 335 (746)
T PTZ00429 286 RCSQELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLLRTN 335 (746)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHHHHH
Confidence 11 1122232222222 4556677888889988888887766666665
No 50
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.47 E-value=0.00033 Score=62.25 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCCh
Q 007670 22 YSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNS 96 (594)
Q Consensus 22 ~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds 96 (594)
.+-|+--|-.+|..|+.+- ++.+++-+...+.++++.+|-++..+|..++..+ .+-+|++.|+..+.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 3556666777777775432 7777777777788899999999999999999888 6678999999999999999999
Q ss_pred hHHHHHH
Q 007670 97 ALQATCI 103 (594)
Q Consensus 97 ~VR~Ac~ 103 (594)
.||.+|.
T Consensus 83 ~Vr~~a~ 89 (97)
T PF12755_consen 83 NVRSAAE 89 (97)
T ss_pred hHHHHHH
Confidence 9999985
No 51
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.45 E-value=0.0049 Score=64.32 Aligned_cols=161 Identities=20% Similarity=0.303 Sum_probs=106.4
Q ss_pred HHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCC------------hhH
Q 007670 31 SIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKN------------SAL 98 (594)
Q Consensus 31 ~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~D------------s~V 98 (594)
.+..-=++..+++++.++.. +++..+|..|.++||-+-....+ .-++.-++|.. ..|
T Consensus 97 aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a~--------~~l~~~l~~~~~~~a~~~~~~~~~~~ 165 (335)
T COG1413 97 ALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERAL--------DPLLEALQDEDSGSAAAALDAALLDV 165 (335)
T ss_pred HHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhhh--------HHHHHHhccchhhhhhhhccchHHHH
Confidence 33333345558888777765 56778888888888877555432 22222333322 357
Q ss_pred HHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhh
Q 007670 99 QATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKA 178 (594)
Q Consensus 99 R~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fka 178 (594)
|.++..+++.+.+.- ...+|.+.+ .+.++.++..|+.+|..+.... ..+.+.+.+.+..++..+
T Consensus 166 r~~a~~~l~~~~~~~-------~~~~l~~~l-~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 166 RAAAAEALGELGDPE-------AIPLLIELL-EDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHHHHHcCChh-------hhHHHHHHH-hCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHH
Confidence 777777777777666 677777777 5677789999999998887754 566778999999998888
Q ss_pred HHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 007670 179 KAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALW 227 (594)
Q Consensus 179 K~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg 227 (594)
+...+.++|- ......++.+..++.+++|.+|..+..+++
T Consensus 230 r~~~~~~l~~---------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 269 (335)
T COG1413 230 RKAALLALGE---------IGDEEAVDALAKALEDEDVILALLAAAALG 269 (335)
T ss_pred HHHHHHHhcc---------cCcchhHHHHHHHHhccchHHHHHHHHHhc
Confidence 7776666652 112344566666666666666665555554
No 52
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.44 E-value=0.013 Score=62.06 Aligned_cols=209 Identities=15% Similarity=0.143 Sum_probs=137.5
Q ss_pred HHHHHHHHHhhcCCChh--HHHHHHHHHHHHH-hhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh---
Q 007670 4 ALKTSVNGLLNKLSDRD--TYSQAAKELDSIA-ATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS--- 73 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrD--T~r~A~~eLD~LA-~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~--- 73 (594)
.+-.++..++..|.|+- |+..|++.|-.+- .++-++. ...++.++.-.+...++..+..+.++++++|=.
T Consensus 40 ~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~ 119 (309)
T PF05004_consen 40 DLEDKLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGA 119 (309)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCC
Confidence 45556788888887765 6677777777644 4444333 556677777766666665666677778887443
Q ss_pred -hccccchHHHHHHHHhhhcCCCh--hHHHHHHHHHHhhchhhhcchhHH-----hHHHHHHHHc--cC---------CC
Q 007670 74 -HNLSPYITKIINSITRNFRDKNS--ALQATCISTVSSLSPRVGASAFVT-----MLKLLSDALF--TE---------QD 134 (594)
Q Consensus 74 -h~isphLpkIL~~IvrrLkD~Ds--~VR~Ac~~ALG~LAe~l~~~~~~~-----~lkPL~eaL~--~e---------q~ 134 (594)
.-..-....+.|++.+-++|... .+|.+|+.|||.++-.....+... .+.-+|.... ++ .+
T Consensus 120 g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 120 GEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred CccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 23344567888888999999764 479999999999988776544222 2332332221 11 13
Q ss_pred hhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC----cC-CchHHHHHHHH
Q 007670 135 TNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV----DG-SGLKGLVSCLL 208 (594)
Q Consensus 135 k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~----~~-pyf~~lm~~L~ 208 (594)
+.+..+|..|-.-++-.+++. +..++...+++|..+|.+++..++.++=.+|+-+.-.+.. |. +..+.++..|.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~ 279 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLR 279 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHH
Confidence 456667777666666555542 3456788999999999999999999998899887754432 32 45555555555
Q ss_pred hhhc
Q 007670 209 GFLS 212 (594)
Q Consensus 209 e~L~ 212 (594)
+..+
T Consensus 280 ~La~ 283 (309)
T PF05004_consen 280 ELAT 283 (309)
T ss_pred HHHH
Confidence 5433
No 53
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.39 E-value=0.0097 Score=62.95 Aligned_cols=178 Identities=17% Similarity=0.202 Sum_probs=117.2
Q ss_pred CCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh--cch---hHHhHHHHH
Q 007670 56 KPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG--ASA---FVTMLKLLS 126 (594)
Q Consensus 56 kp~~RKaaI~lLGvlae~h----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~--~~~---~~~~lkPL~ 126 (594)
+...|.+++..|-.+...| ++..+...|+..+.+.|+=..+.=+..++.+++.|+=.+. ... +..+.++|.
T Consensus 56 ~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~ 135 (309)
T PF05004_consen 56 SSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLK 135 (309)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHH
Confidence 3678999999998887666 7777888899999999998887667778888999988874 221 112455555
Q ss_pred HHHccCCChhHHH--HH--HHHHHHHHhhcCCCcchhHHHHHHHHHHHh--cCC----------chhhHHHHHHHHHHHH
Q 007670 127 DALFTEQDTNAQV--GA--ALCLAATIDAAQDPDAGKLGRMEVRLERLL--KSE----------VFKAKAAGLVVVGSVI 190 (594)
Q Consensus 127 eaL~~eq~k~vQ~--~A--a~ALaavvE~l~~~i~~yL~~L~~RL~klL--~s~----------~fkaK~alL~aIGSiA 190 (594)
..+ .+....++. ++ |+++..|+-+.+.....-+-..|+-++... +.. +..+..++|.+-|-++
T Consensus 136 ~~l-~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLl 214 (309)
T PF05004_consen 136 RIL-TDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLL 214 (309)
T ss_pred HHH-hCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHH
Confidence 555 333333332 22 555556664433322222334555333322 221 2346677777777777
Q ss_pred hcCcC--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670 191 GSGAV--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 191 ~a~~~--~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g 234 (594)
.--.. +..+....++.|.+.|.++|-.+|.+|-++|+-|-....
T Consensus 215 t~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 215 TTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 43322 235567789999999999999999999999998877643
No 54
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.38 E-value=0.0002 Score=50.42 Aligned_cols=31 Identities=3% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 83 IINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
|+|.+.+.++||++.||.|++.++|.|++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999999999999999864
No 55
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.35 E-value=0.0044 Score=68.06 Aligned_cols=162 Identities=20% Similarity=0.130 Sum_probs=106.6
Q ss_pred HHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHh
Q 007670 29 LDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSS 108 (594)
Q Consensus 29 LD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~ 108 (594)
||.|..-= +..++.++..|.+ .+.+.++.+++.++.-... +..+..+++.|.|++..||.++..+||.
T Consensus 45 LdgL~~~G-~~a~~~L~~aL~~---d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~ 112 (410)
T TIGR02270 45 VDGLVLAG-KAATELLVSALAE---ADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGW 112 (410)
T ss_pred HHHHHHhh-HhHHHHHHHHHhh---CCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 55555433 3347777777754 2445666666555542211 1137888889999999999999999997
Q ss_pred hchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 007670 109 LSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGS 188 (594)
Q Consensus 109 LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGS 188 (594)
+-..- ....|...| .+.++.++.++..++..... + -.+.+.++|+++++.++..++.++|.
T Consensus 113 i~~~~-------a~~~L~~~L-~~~~p~vR~aal~al~~r~~---~--------~~~~L~~~L~d~d~~Vra~A~raLG~ 173 (410)
T TIGR02270 113 LGGRQ-------AEPWLEPLL-AASEPPGRAIGLAALGAHRH---D--------PGPALEAALTHEDALVRAAALRALGE 173 (410)
T ss_pred CCchH-------HHHHHHHHh-cCCChHHHHHHHHHHHhhcc---C--------hHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 55444 555566666 67788888766655554211 1 12357777888888888888888886
Q ss_pred HHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 189 VIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 189 iA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
+-.. ..++.|...+.+.+-.+|.+|+.+|+.+.
T Consensus 174 l~~~---------~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 174 LPRR---------LSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred hccc---------cchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 4321 23445666788888888888888887664
No 56
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.30 E-value=0.0082 Score=65.98 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=99.8
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
+..++.++. +.++.+|.+++.+||.+ ..+...+.++..|+|+++.||.+++.++|..-..
T Consensus 88 ~~~L~~~L~----d~~~~vr~aaa~ALg~i--------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------- 147 (410)
T TIGR02270 88 LRSVLAVLQ----AGPEGLCAGIQAALGWL--------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------- 147 (410)
T ss_pred HHHHHHHhc----CCCHHHHHHHHHHHhcC--------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhccC--------
Confidence 444444443 34556777777777753 3344555566666666666666666666652211
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH---------h
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI---------G 191 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA---------~ 191 (594)
-.++|..+| .+.++.|...|+.||..+-.. ..++.|..++.+.+..++.+++.+++-+- .
T Consensus 148 ~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~ 216 (410)
T TIGR02270 148 PGPALEAAL-THEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRR 216 (410)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Confidence 123444444 455666666666665544321 11222334455555555555444332210 0
Q ss_pred cCcCcCC-------------chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH-HH
Q 007670 192 SGAVDGS-------------GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK-MI 257 (594)
Q Consensus 192 a~~~~~p-------------yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK-~i 257 (594)
.....++ --+..++.|.+.+.+++ +|-.++.+||.+... . ....++..++.-++-. +-
T Consensus 217 ~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p---~---av~~L~~~l~d~~~aR~A~ 288 (410)
T TIGR02270 217 FQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGDV---E---AAPWCLEAMREPPWARLAG 288 (410)
T ss_pred HHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc---c---hHHHHHHHhcCcHHHHHHH
Confidence 0000000 11245566666666655 888888888877432 1 2455566666555555 88
Q ss_pred HHHhhcCCC
Q 007670 258 EAWKQVPDL 266 (594)
Q Consensus 258 ~lWk~i~~v 266 (594)
+.++.|.|.
T Consensus 289 eA~~~ItG~ 297 (410)
T TIGR02270 289 EAFSLITGM 297 (410)
T ss_pred HHHHHhhCC
Confidence 888888875
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=97.28 E-value=0.014 Score=68.69 Aligned_cols=168 Identities=14% Similarity=0.122 Sum_probs=113.5
Q ss_pred hhcCCChh--HHHHHHHHHHH-HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccc-hHHHHHHHH
Q 007670 13 LNKLSDRD--TYSQAAKELDS-IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY-ITKIINSIT 88 (594)
Q Consensus 13 L~KLsDrD--T~r~A~~eLD~-LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isph-LpkIL~~Iv 88 (594)
-++|..+| ..+-|++-+-. |+.. ..+..++.-+....++.+...||=+++.+-..++.+ |- .--.++++.
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~mt~G---~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~---pelalLaINtl~ 111 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANMTMG---RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ---PEKALLAVNTFL 111 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCC---CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC---hHHHHHHHHHHH
Confidence 34443434 44555544333 3333 234444444444566788899998888888776644 22 223478999
Q ss_pred hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 007670 89 RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168 (594)
Q Consensus 89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~ 168 (594)
+-++|+++.||.-|+.+|+.+-..-. ...++.|+-..| .+.++.|-..||+|+.++....++.+. -..+.++|.
T Consensus 112 KDl~d~Np~IRaLALRtLs~Ir~~~i---~e~l~~~lkk~L-~D~~pYVRKtAalai~Kly~~~pelv~--~~~~~~~L~ 185 (746)
T PTZ00429 112 QDTTNSSPVVRALAVRTMMCIRVSSV---LEYTLEPLRRAV-ADPDPYVRKTAAMGLGKLFHDDMQLFY--QQDFKKDLV 185 (746)
T ss_pred HHcCCCCHHHHHHHHHHHHcCCcHHH---HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCccccc--ccchHHHHH
Confidence 99999999999999999998765431 112666777777 689999999999999999886554321 123556777
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhc
Q 007670 169 RLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 169 klL~s~~fkaK~alL~aIGSiA~a 192 (594)
++|..++..+...++.++-.|...
T Consensus 186 ~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 186 ELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHh
Confidence 889888888888887777776543
No 58
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.26 E-value=0.0048 Score=68.14 Aligned_cols=190 Identities=15% Similarity=0.149 Sum_probs=133.9
Q ss_pred HHHHhhcCCCh---hHHHHHHHHHHHHHhhcCC---CC-hHHHHHhhhhcCCC-CCCcchHHHHHHHHHHHhhh--cccc
Q 007670 9 VNGLLNKLSDR---DTYSQAAKELDSIAATVDP---TL-LPTFLSCILSTNSS-DKPGVRKECIHVIATLSNSH--NLSP 78 (594)
Q Consensus 9 vl~~L~KLsDr---DT~r~A~~eLD~LA~~Lpp---e~-lp~fLs~L~e~~ss-~kp~~RKaaI~lLGvlae~h--~isp 78 (594)
|.+-|.++++. |-++.|+.+|-.|...=.- ++ |.-+|..+.|.... .+...|+.|++.|+-+|..- .+-.
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D 367 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD 367 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc
Confidence 45566777655 4888999998887663110 33 77788888887665 67889999999999998877 5556
Q ss_pred chHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-c
Q 007670 79 YITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-D 156 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-i 156 (594)
+-+--+--+...-+|++. ++|.|.-+++..++.+....+.. .+.|++- ++.+|. -..+.-++.+++|.+..+ .
T Consensus 368 stE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~-~i~~~Il---t~D~~~-~~~~iKm~Tkl~e~l~~EeL 442 (516)
T KOG2956|consen 368 STEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIV-NISPLIL---TADEPR-AVAVIKMLTKLFERLSAEEL 442 (516)
T ss_pred hHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHH-HHhhHHh---cCcchH-HHHHHHHHHHHHhhcCHHHH
Confidence 666666666677788776 67888888888889888544433 3333332 233332 223344899999998755 4
Q ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHH-HHHHHHhcC-cCcCCchHHH
Q 007670 157 AGKLGRMEVRLERLLKSEVFKAKAAGLV-VVGSVIGSG-AVDGSGLKGL 203 (594)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~fkaK~alL~-aIGSiA~a~-~~~~pyf~~l 203 (594)
...++.++|.+++..++.+--++.+++- +|.=+..+| +++.||+.++
T Consensus 443 ~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 443 LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 6789999999999999997776555444 444455777 5677998875
No 59
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.00092 Score=71.38 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=130.5
Q ss_pred CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHH------hhh-ccccchHHHHHHHHhhhcCCC-hhHHHHHHHHHHh
Q 007670 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLS------NSH-NLSPYITKIINSITRNFRDKN-SALQATCISTVSS 108 (594)
Q Consensus 37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvla------e~h-~isphLpkIL~~IvrrLkD~D-s~VR~Ac~~ALG~ 108 (594)
+...+|.|++.|.+. .-.+|..++-+||.+| +.| +-.--|+.+|..+... -++ +.||.| -|+|..
T Consensus 155 d~~AVPlfiqlL~s~----~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss--~~~ismlRn~-TWtLSN 227 (526)
T COG5064 155 DAGAVPLFIQLLSST----EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS--AIHISMLRNA-TWTLSN 227 (526)
T ss_pred eCCchHHHHHHHcCc----hHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc--cchHHHHHHh-HHHHHH
Confidence 455589999998853 3469999999999993 333 4445588888877632 243 345655 578888
Q ss_pred hchhhhcch---hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHHHHhcCCchhhHHHHHH
Q 007670 109 LSPRVGASA---FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLV 184 (594)
Q Consensus 109 LAe~l~~~~---~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~klL~s~~fkaK~alL~ 184 (594)
|+.----+| ..+...|++.-|+-.-|+.+-.-||-|+--+.++..+.+-..+.. +++||+++|.|++.++...+|-
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 876542223 223555666666566788899999999999999876666555544 7889999999999999888888
Q ss_pred HHHHHHhcCcCcCCc--hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 185 VVGSVIGSGAVDGSG--LKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 185 aIGSiA~a~~~~~py--f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
.||-|+.....-.+. --..++.+...|.+.--.+||.||=+++-|..
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA 356 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA 356 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc
Confidence 888776443321111 11235556666887766999999999887754
No 60
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0073 Score=73.90 Aligned_cols=193 Identities=17% Similarity=0.136 Sum_probs=137.6
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhc---hhhh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS---PRVG 114 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LA---e~l~ 114 (594)
+..++.-|.....+-.|.+|.++-++|..|-.|+ -+..+||+||-.+.|-.-|---+||.|+=.+...|+ -.++
T Consensus 1037 ~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~ 1116 (1702)
T KOG0915|consen 1037 LNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRIC 1116 (1702)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5556666667788889999999999999999999 888999999999999999999999999755544444 4443
Q ss_pred cc-------------------------------------------------hhHHhHHHHHHHHccCCChhHHH-HHH--
Q 007670 115 AS-------------------------------------------------AFVTMLKLLSDALFTEQDTNAQV-GAA-- 142 (594)
Q Consensus 115 ~~-------------------------------------------------~~~~~lkPL~eaL~~eq~k~vQ~-~Aa-- 142 (594)
+. |...=|-|++-.++++.++.|-- -|+
T Consensus 1117 d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1117 DVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred ccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence 20 00011223333333444443321 111
Q ss_pred -----HHHHHH--------------HhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHH-hcCcCcCCchH
Q 007670 143 -----LCLAAT--------------IDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVI-GSGAVDGSGLK 201 (594)
Q Consensus 143 -----~ALaav--------------vE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA-~a~~~~~pyf~ 201 (594)
-||+.. -..+.+.+...|.+|.||+.++++.. +...|.++.+.|..++ +.+.+..||-.
T Consensus 1197 ~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg 1276 (1702)
T KOG0915|consen 1197 INIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG 1276 (1702)
T ss_pred hhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh
Confidence 112211 01112333456899999999999988 7778999999999988 67778889999
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 202 ~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
.+|..+..-+.+-.-.+||+-+-|+|.++...
T Consensus 1277 Kll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1277 KLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 99999988888888888888888888888643
No 61
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.19 E-value=0.0093 Score=57.75 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=94.5
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHH
Q 007670 25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS 104 (594)
Q Consensus 25 A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ 104 (594)
|+-.|--|+...| .-+-++++.|...+.+++|.+|+.|+++|.-|....++ +.=+.++..+.+.|.|+|+.||++|..
T Consensus 8 ~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-k~k~~l~~~~l~~l~D~~~~Ir~~A~~ 85 (178)
T PF12717_consen 8 AIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-KVKGQLFSRILKLLVDENPEIRSLARS 85 (178)
T ss_pred HHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-eehhhhhHHHHHHHcCCCHHHHHHHHH
Confidence 3444444455444 34666777777777788999999999999998766633 222445666667789999999999999
Q ss_pred HHHhhchhhhcchhHHhHHHHHHHHccCC-Ch----hHHHHHHHHHHHHHhhcC-CCc-chhHHHHHHHHHHHh
Q 007670 105 TVSSLSPRVGASAFVTMLKLLSDALFTEQ-DT----NAQVGAALCLAATIDAAQ-DPD-AGKLGRMEVRLERLL 171 (594)
Q Consensus 105 ALG~LAe~l~~~~~~~~lkPL~eaL~~eq-~k----~vQ~~Aa~ALaavvE~l~-~~i-~~yL~~L~~RL~klL 171 (594)
.+..++.......+...+..++..|.+.. .+ .....=-.-+.-+++.+. +.. ...+.+||.|+....
T Consensus 86 ~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 86 FFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHc
Confidence 99999888633445557888888884321 11 111112233455566665 333 345666777766655
No 62
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.019 Score=69.09 Aligned_cols=237 Identities=11% Similarity=0.165 Sum_probs=171.6
Q ss_pred ChhHHHHHHHHHHHHHhh-----cCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhh
Q 007670 18 DRDTYSQAAKELDSIAAT-----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRN 90 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~-----Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Ivrr 90 (594)
+.-+++=|.+.|+.+... +..+.+--+.+.|.+.+++...+.|+..+.+|-.|.+.| -..-.+++.||-++=.
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 334788899999998877 333337778888888899999999999999999999988 5556788999987777
Q ss_pred hcCCChhHHH---HHHHHHHhhchhhhc--ch-h-H--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhH
Q 007670 91 FRDKNSALQA---TCISTVSSLSPRVGA--SA-F-V--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKL 160 (594)
Q Consensus 91 LkD~Ds~VR~---Ac~~ALG~LAe~l~~--~~-~-~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL 160 (594)
++|-+..-|+ +|+.-+|.+...+.+ ++ . . -|+.-|.+.|.|+.-..+- +-..|+..++..-...+ .+++
T Consensus 747 ~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~a-s~Ivai~~il~e~~~~ld~~~l 825 (1176)
T KOG1248|consen 747 LKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVA-SDIVAITHILQEFKNILDDETL 825 (1176)
T ss_pred cccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHH-HHHHHHHHHHHHHhccccHHHH
Confidence 7998876555 555666643333332 23 2 2 1777777777654322222 22556666655544333 5799
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-Ccc
Q 007670 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAV 237 (594)
Q Consensus 161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f 237 (594)
++|+.-+.-.|.+.+.++..++++.|...+..=.+. .+|.+.+|+.+...+.+----.|+.+--.|-.+..-.| +.+
T Consensus 826 ~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eL 905 (1176)
T KOG1248|consen 826 EKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEEL 905 (1176)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999999999888888888887766654443 49999999999996666678889999999999998877 555
Q ss_pred chhh-hHHHHHHHhcchhH
Q 007670 238 PEFK-GKCLKIFESKRFDK 255 (594)
Q Consensus 238 ~py~-~~~m~sLEs~RfDK 255 (594)
.+|. +.-++.|.+-|=-+
T Consensus 906 e~~~pee~~klL~nIRK~r 924 (1176)
T KOG1248|consen 906 ESFLPEEDMKLLTNIRKRR 924 (1176)
T ss_pred HhhCHHHHHHHHHHHHHHH
Confidence 5554 55557888665544
No 63
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.11 E-value=0.015 Score=64.29 Aligned_cols=205 Identities=12% Similarity=0.086 Sum_probs=137.6
Q ss_pred HHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHH-HHHHHHhhh--ccccchHHHHHHHHhhhcC-CChhHHHHHHH
Q 007670 32 IAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIH-VIATLSNSH--NLSPYITKIINSITRNFRD-KNSALQATCIS 104 (594)
Q Consensus 32 LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~-lLGvlae~h--~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~ 104 (594)
...++.|+. .+-..+.|.+...+.+...||+|+. +++++|++- .--.|..+||-.++.-|.| -+...+.-|+.
T Consensus 273 ~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLr 352 (516)
T KOG2956|consen 273 SMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALR 352 (516)
T ss_pred chhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHH
Confidence 444454444 5556666677777778999999999 889999987 5556899999999999999 66778888887
Q ss_pred HHHhhchhhhc----chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHH
Q 007670 105 TVSSLSPRVGA----SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180 (594)
Q Consensus 105 ALG~LAe~l~~----~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~ 180 (594)
.|+-++..-.. ..+.+++|-|-.+- +..+.+-..|+-|+-+++-... +..-+-.+++.|+. .+.+.-.
T Consensus 353 vL~~ml~~Q~~~l~DstE~ai~K~Leaa~--ds~~~v~~~Aeed~~~~las~~--P~~~I~~i~~~Ilt----~D~~~~~ 424 (516)
T KOG2956|consen 353 VLREMLTNQPARLFDSTEIAICKVLEAAK--DSQDEVMRVAEEDCLTTLASHL--PLQCIVNISPLILT----ADEPRAV 424 (516)
T ss_pred HHHHHHHhchHhhhchHHHHHHHHHHHHh--CCchhHHHHHHHHHHHHHHhhC--chhHHHHHhhHHhc----CcchHHH
Confidence 77776655432 12344777666664 3444455555555444443211 11222333343333 4444434
Q ss_pred HHHHHHHHHHh-cCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHH
Q 007670 181 AGLVVVGSVIG-SGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKC 244 (594)
Q Consensus 181 alL~aIGSiA~-a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~ 244 (594)
++|-.+--++. ...+ ..+.++.++|++.+.-.+..-.+||.|.=||-+|...+| +.+.||...+
T Consensus 425 ~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~L 491 (516)
T KOG2956|consen 425 AVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQL 491 (516)
T ss_pred HHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhc
Confidence 44444444442 2233 347788999999999999999999999999999999999 8999996543
No 64
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0041 Score=67.03 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=138.3
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhh------c---CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccc
Q 007670 8 SVNGLLNKLSDRDTYSQAAKELDSIAAT------V---DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLS 77 (594)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~LA~~------L---ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~is 77 (594)
.++-.|.|-+|-|.+..+...|-.||-. | .|.-+|.+++.+- +..+-++-.+-++|+.++..- +..
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd----~~s~kvkcqA~lALrnlasdt~Yq~ 286 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD----DGSDKVKCQAGLALRNLASDTEYQR 286 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh----CCChHHHHHHHHHHhhhcccchhhh
Confidence 4667788889999776666666555432 2 2333666555544 355568888889999997766 444
Q ss_pred cchH-HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670 78 PYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (594)
Q Consensus 78 phLp-kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~ 153 (594)
|-.+ -=+|.+++.|+||--..--|.+..+..++-+=.....+ .|++||...|--..+..+|..|..-|-.+--...
T Consensus 287 eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse 366 (550)
T KOG4224|consen 287 EIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSE 366 (550)
T ss_pred HHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhh
Confidence 4322 23678889998887766656665565555554433322 2999999999533455577666555444332211
Q ss_pred CCcchhHHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch-H-HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 154 DPDAGKLGR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL-K-GLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 154 ~~i~~yL~~-L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf-~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
.....+... -+|++..++-..+..++.-.-+||+-++-... +..|| + .++|.|++.+.++.-++|.-|+.+|+-+.
T Consensus 367 ~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~-~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 367 HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDN-DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccc-cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 111112111 45566667766666666667777776664432 22222 2 36899999999999999999999999876
Q ss_pred H
Q 007670 231 V 231 (594)
Q Consensus 231 ~ 231 (594)
.
T Consensus 446 s 446 (550)
T KOG4224|consen 446 S 446 (550)
T ss_pred h
Confidence 5
No 65
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.02 E-value=0.0038 Score=74.86 Aligned_cols=160 Identities=16% Similarity=0.108 Sum_probs=125.8
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc
Q 007670 52 NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT 131 (594)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~ 131 (594)
...++|.+|++=+-.|+-||-.+--..-=.-||++++.-|.|-|..+|-|-.+.+.-+|-++.......++.||+.-=+.
T Consensus 587 lsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt 666 (1431)
T KOG1240|consen 587 LSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT 666 (1431)
T ss_pred HcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc
Confidence 55677899999999988888877333344568999999999999999999999999888888544444577777665558
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007670 132 EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL 211 (594)
Q Consensus 132 eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L 211 (594)
+++..|-..|.+||..+|+.- ---.+++-+++..+.-+|-+|+-=++.++++.|.+++..-.+..-|- .+||.|.+||
T Consensus 667 D~EE~Viv~aL~~ls~Lik~~-ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc-~l~P~irpfl 744 (1431)
T KOG1240|consen 667 DGEEAVIVSALGSLSILIKLG-LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYC-KLMPLIRPFL 744 (1431)
T ss_pred CcchhhHHHHHHHHHHHHHhc-ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheE-EeehhhHHhh
Confidence 999999999999999999962 22246888899999999999999999999999999886544433332 4567777776
Q ss_pred cC
Q 007670 212 SS 213 (594)
Q Consensus 212 ~s 213 (594)
..
T Consensus 745 ~~ 746 (1431)
T KOG1240|consen 745 ER 746 (1431)
T ss_pred hc
Confidence 64
No 66
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.96 E-value=0.0084 Score=61.94 Aligned_cols=150 Identities=15% Similarity=0.147 Sum_probs=113.9
Q ss_pred cCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchH--HHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 36 VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT--KIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 36 Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLp--kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
|.++.|..|+.+|.. +.+|..++.++.++|..+..-+-...+. -.++.|...|.+|++.||.-++.|+..||...
T Consensus 9 l~~~~l~~Ll~lL~~---t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLES---TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred cCHHHHHHHHHHHhc---CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 677778888888764 4789999999999999754322222222 35788999999999999999999999999887
Q ss_pred hcchhH-HhHHHHHHHHccC-CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670 114 GASAFV-TMLKLLSDALFTE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 114 ~~~~~~-~~lkPL~eaL~~e-q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA 190 (594)
..+..+ .++..+.+.+... -+..+|.++..+|..+. ..+.....+...++.|+.+|.+.+-++|..+|-++.-++
T Consensus 86 en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLt--v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 86 ENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLT--VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccC--CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 544433 3777777766543 48889998888888773 333334567777888999999999999999888887766
No 67
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.0091 Score=63.17 Aligned_cols=172 Identities=21% Similarity=0.164 Sum_probs=114.9
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~ 118 (594)
-..-|.....-+++.+|...=.++..+-.|++.| .+.+.|.+++.+|++-++.+-|.|-+|+|-|++.+...+-+...
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555577889999999999999999999 99999999999999999999999999999999999999943322
Q ss_pred HHhHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC--chhhHHHHHHHHHHHH--h
Q 007670 119 VTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE--VFKAKAAGLVVVGSVI--G 191 (594)
Q Consensus 119 ~~~lkPL~eaL~~---eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~--~fkaK~alL~aIGSiA--~ 191 (594)
. -+..|+-.|++ +.+.=+-..|=-||-++|..... ...|+.|.+. +.+. ...+|.++. ....+. +
T Consensus 166 ~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--~~~L~~L~~~----~~~~n~r~r~~a~~~-~~~~v~rl~ 237 (334)
T KOG2933|consen 166 Q-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--QKLLRKLIPI----LQHSNPRVRAKAALC-FSRCVIRLG 237 (334)
T ss_pred H-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--HHHHHHHHHH----Hhhhchhhhhhhhcc-ccccceecc
Confidence 2 67777777762 23455566777778888876443 2344444444 4433 333333321 111111 1
Q ss_pred cCcCcCCchHHHHHHHHhhhcCCcHHHHH
Q 007670 192 SGAVDGSGLKGLVSCLLGFLSSQDWAARK 220 (594)
Q Consensus 192 a~~~~~pyf~~lm~~L~e~L~seDw~lRK 220 (594)
+.+.-.+|...+++.+++-+.+.--.+|+
T Consensus 238 v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~ 266 (334)
T KOG2933|consen 238 VLPVLLQGSCDLSRAAQEQGSDKLPELRE 266 (334)
T ss_pred ccchhhHhHHHHHHHHHhhhccccccccc
Confidence 22223366667777777776665444443
No 68
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.80 E-value=0.017 Score=65.65 Aligned_cols=195 Identities=16% Similarity=0.091 Sum_probs=136.1
Q ss_pred HHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 007670 30 DSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVS 107 (594)
Q Consensus 30 D~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG 107 (594)
-..|.+|--+++.+||..++-.. --|..|.-||+..-.+|+.- .+-+||..++.+|-+.|+|-..-||=.++.||.
T Consensus 306 ~vva~algv~~llpfl~a~c~Sr--kSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS 383 (975)
T COG5181 306 GVVADALGVEELLPFLEALCGSR--KSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALS 383 (975)
T ss_pred HHHHHhhCcHHHHHHHHHHhcCc--cchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHH
Confidence 34566776667888888887543 24779999999999998876 777999999999999999999999999999999
Q ss_pred hhchhhhc---chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc----chhH----HHHHHHHHHHhcCCch
Q 007670 108 SLSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD----AGKL----GRMEVRLERLLKSEVF 176 (594)
Q Consensus 108 ~LAe~l~~---~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i----~~yL----~~L~~RL~klL~s~~f 176 (594)
.+|+...- +.|..+|.||-+....+-.+ -|.+|+.+++..+ .+|+ ...|.-++..|++|.-
T Consensus 384 ~lae~~~Pygie~fd~vl~pLw~g~~~hrgk--------~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spde 455 (975)
T COG5181 384 YLAELVGPYGIEQFDEVLCPLWEGASQHRGK--------ELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDE 455 (975)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHhcCCc--------hHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchh
Confidence 99998832 12455899999887532233 2444444443222 2343 5688889999999988
Q ss_pred hhHHHHHHHHHHHHhcCcCcC-CchH---------------------------------------HHHHHHHhhhcCCcH
Q 007670 177 KAKAAGLVVVGSVIGSGAVDG-SGLK---------------------------------------GLVSCLLGFLSSQDW 216 (594)
Q Consensus 177 kaK~alL~aIGSiA~a~~~~~-pyf~---------------------------------------~lm~~L~e~L~seDw 216 (594)
+-|.-++-...--+.+++... -|++ .++..+.+++.++.-
T Consensus 456 emkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~kil~~~~De~e 535 (975)
T COG5181 456 EMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKILEYYSDEPE 535 (975)
T ss_pred hcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHHHhhccCCcc
Confidence 888777765554445543321 1111 223444555666667
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 007670 217 AARKAAAEALWRLAVVEK 234 (594)
Q Consensus 217 ~lRKaAaDaLg~IA~a~g 234 (594)
+-||.++.+..++-..+|
T Consensus 536 p~r~m~a~~vsri~~~lg 553 (975)
T COG5181 536 PYRKMNAGLVSRIFSRLG 553 (975)
T ss_pred hhhhhhhHHHHHHHHhcc
Confidence 777777777776665444
No 69
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=96.66 E-value=0.07 Score=55.37 Aligned_cols=49 Identities=12% Similarity=-0.032 Sum_probs=40.6
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHH
Q 007670 200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIF 248 (594)
Q Consensus 200 f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sL 248 (594)
.+.++|.|.+.|.++.-.++.-++++|..-+...| +.+.||...+..+|
T Consensus 206 a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 206 APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 35689999999999988899999999998888877 68888877766555
No 70
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.62 E-value=0.059 Score=62.58 Aligned_cols=152 Identities=18% Similarity=0.203 Sum_probs=110.3
Q ss_pred HHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHh
Q 007670 31 SIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSS 108 (594)
Q Consensus 31 ~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~ 108 (594)
..|.+|-=..+.+||..++.+- --|..|.-||+..--+|..- .+-|||..++.+|-.+|.|-..-||-.++.||+.
T Consensus 502 vvasalgip~llpfLkavc~Sk--kSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsa 579 (1172)
T KOG0213|consen 502 VVASALGIPALLPFLKAVCGSK--KSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSA 579 (1172)
T ss_pred HHHHHhCcHHHHHHHHHHhccc--cchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHH
Confidence 3455554445777777777532 23788999999999987654 8889999999999999999999999999999999
Q ss_pred hchhhhc---chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-------chhH-HHHHHHHHHHhcCCchh
Q 007670 109 LSPRVGA---SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-------AGKL-GRMEVRLERLLKSEVFK 177 (594)
Q Consensus 109 LAe~l~~---~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-------~~yL-~~L~~RL~klL~s~~fk 177 (594)
||+...- +.|.++|+||-+.+-.+-.+. |++|+-+.++-+ ..|+ ..+|-.+.+-+.+|+-.
T Consensus 580 laeaa~Pygie~fDsVlkpLwkgir~hrgk~--------laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDee 651 (1172)
T KOG0213|consen 580 LAEAATPYGIEQFDSVLKPLWKGIRQHRGKE--------LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEE 651 (1172)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHccChH--------HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHH
Confidence 9998842 235679999999985333332 333433332221 2343 45888899999999977
Q ss_pred hHHHHHHHHHHHHhc
Q 007670 178 AKAAGLVVVGSVIGS 192 (594)
Q Consensus 178 aK~alL~aIGSiA~a 192 (594)
-|..+|-++--....
T Consensus 652 mkkivLKVv~qcc~t 666 (1172)
T KOG0213|consen 652 MKKIVLKVVKQCCAT 666 (1172)
T ss_pred HHHHHHHHHHHHhcc
Confidence 777777666654433
No 71
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.56 E-value=0.079 Score=55.35 Aligned_cols=123 Identities=17% Similarity=0.266 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhhcCCCC-hHHHHH-hhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHH
Q 007670 24 QAAKELDSIAATVDPTL-LPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQ 99 (594)
Q Consensus 24 ~A~~eLD~LA~~Lppe~-lp~fLs-~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR 99 (594)
++...|+.....+.+.. +..++. .|.+...+.++.+|+.|+++||.+|=.. ....|++-++..+.+ | +..|+
T Consensus 6 i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~---~-~~~v~ 81 (298)
T PF12719_consen 6 ITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQK---D-DEEVK 81 (298)
T ss_pred HHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHh---C-CHHHH
Confidence 45566677666776665 666664 4579999999999999999999998777 666777777776633 4 88899
Q ss_pred HHHHHHHHhhchhhhcc-----hh-------HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670 100 ATCISTVSSLSPRVGAS-----AF-------VTMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (594)
Q Consensus 100 ~Ac~~ALG~LAe~l~~~-----~~-------~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~ 151 (594)
-.|+.++.-+.-...-. .. ..+++-+...|. ..++.+|..|+-++++++=+
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLD-SENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHhc
Confidence 99998888777665321 11 137777777874 44888999999999998765
No 72
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.15 Score=61.23 Aligned_cols=214 Identities=19% Similarity=0.194 Sum_probs=126.4
Q ss_pred HHHHHhhcCCChhH--HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhcccc-ch
Q 007670 8 SVNGLLNKLSDRDT--YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP-YI 80 (594)
Q Consensus 8 rvl~~L~KLsDrDT--~r~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isp-hL 80 (594)
-+...|.-|+|.|| .-.|++-+-.++..||++- |...++++.+.. .+..=-.++++||.||..-.+-| -+
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e---~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAE---DDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCC---chhHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556677788884 6799999999999999544 445555444332 22333388999999988774444 68
Q ss_pred HHHHHHHHhhhcCCC--------hhHHHHHHHHHHhhchhhhcchhHHhHHHH-----HHHHccCCChhHHHHHHHHHHH
Q 007670 81 TKIINSITRNFRDKN--------SALQATCISTVSSLSPRVGASAFVTMLKLL-----SDALFTEQDTNAQVGAALCLAA 147 (594)
Q Consensus 81 pkIL~~IvrrLkD~D--------s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL-----~eaL~~eq~k~vQ~~Aa~ALaa 147 (594)
+.++|.|++.|.-.+ ..||+|+|..+=+|+.-+......-++.-| ..|+| +.+-++-.+|+.||..
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlF-DrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALF-DREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhc-CchhhHhHHHHHHHHH
Confidence 999999999997654 569999999999998888322111133333 34444 5667777788887777
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhh-hcCCcHHHHHHHHHHH
Q 007670 148 TIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGF-LSSQDWAARKAAAEAL 226 (594)
Q Consensus 148 vvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~-L~seDw~lRKaAaDaL 226 (594)
.|-.-+..+.+. .++.+.+|-+-.-.-.+-.-+.-.-++|..|-..++..|.-- +..=|=.+|-.|+.+|
T Consensus 498 ~VGR~~n~p~Gi---------~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL 568 (1133)
T KOG1943|consen 498 NVGRQGNFPHGI---------SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYAL 568 (1133)
T ss_pred HhccCCCCCCch---------hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHH
Confidence 766543332110 122222332211111112222222234455555444444322 3333445577777777
Q ss_pred HHHHHHcC
Q 007670 227 WRLAVVEK 234 (594)
Q Consensus 227 g~IA~a~g 234 (594)
..|+....
T Consensus 569 ~~Ls~~~p 576 (1133)
T KOG1943|consen 569 HKLSLTEP 576 (1133)
T ss_pred HHHHHhhH
Confidence 77776543
No 73
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.44 E-value=0.002 Score=50.28 Aligned_cols=53 Identities=26% Similarity=0.237 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670 177 KAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (594)
Q Consensus 177 kaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I 229 (594)
.+|.+++-+||.++...+.. .+|++.+|+.|...|.+++-.+|.+|+.+||.|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46777888999876555443 599999999999999988889999999999865
No 74
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.40 E-value=0.13 Score=60.71 Aligned_cols=259 Identities=11% Similarity=0.120 Sum_probs=167.8
Q ss_pred hHHHHHHHHHhhcCC-ChhH--HHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHH-HHHHHHHHhhhccc
Q 007670 3 HALKTSVNGLLNKLS-DRDT--YSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKEC-IHVIATLSNSHNLS 77 (594)
Q Consensus 3 ~~Lk~rvl~~L~KLs-DrDT--~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaa-I~lLGvlae~h~is 77 (594)
++.-..++..|..|. +.+| ..-++..|-..+..+|.+. ...|...+.-.... ++...|-. =-+|+.+.- .+.
T Consensus 154 ~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~--~~~ 230 (759)
T KOG0211|consen 154 PEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFGKLYV--SLP 230 (759)
T ss_pred hhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccch-hhhhcchhhhhhhHHhcc--CCC
Confidence 556667777777774 6667 7888899999999998877 34544444332222 44332221 122222211 221
Q ss_pred -cch-HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670 78 -PYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 78 -phL-pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
+-+ .++.+...+.-+|-++.||.|.+.=+|.+|..+...-..+.+.|.+..|..+..-.|+..|.-++..+.+..+.+
T Consensus 231 ~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~ 310 (759)
T KOG0211|consen 231 DDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD 310 (759)
T ss_pred hHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc
Confidence 122 345555556667888999999999999999999765555688899999987766779999999999999988776
Q ss_pred cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007670 156 DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (594)
Q Consensus 156 i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g- 234 (594)
. +....+++.++++.+..+-....++...--.+..+-+. ..+-....+....-+.++.|..|.+++--...++..+.
T Consensus 311 ~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~ 388 (759)
T KOG0211|consen 311 D-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNA 388 (759)
T ss_pred h-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc-ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCc
Confidence 5 66778999999999988877776655544444332222 22223445667777888999999999888888887765
Q ss_pred Cccchhhh-HHHHHHHhcchhHHHHHHhhcCCC
Q 007670 235 DAVPEFKG-KCLKIFESKRFDKMIEAWKQVPDL 266 (594)
Q Consensus 235 d~f~py~~-~~m~sLEs~RfDK~i~lWk~i~~v 266 (594)
+.+..... .++-....+=.|++...-+..+-+
T Consensus 389 ~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~ 421 (759)
T KOG0211|consen 389 SCYPNIPDSSILPEVQVLVLDNALHVRSALASV 421 (759)
T ss_pred ccccccchhhhhHHHHHHHhcccchHHHHHhcc
Confidence 23332222 222333344445544444443333
No 75
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.36 E-value=0.0062 Score=42.80 Aligned_cols=30 Identities=37% Similarity=0.369 Sum_probs=26.7
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 203 LVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 203 lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
+||.+.+.+.+++|.+|.+|+.+|+.|+..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999863
No 76
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.27 E-value=0.079 Score=51.07 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=94.8
Q ss_pred ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhc
Q 007670 40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGA 115 (594)
Q Consensus 40 ~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~ 115 (594)
.+..+...|....++..+..|-.++.+++++++.+ .+..|-...+..+++-|+.+|+ .+..+|+.+++.|.+.+.+
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 38888888888888999999999999999998886 6656767777777777777776 6799999999999998875
Q ss_pred chh----------HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670 116 SAF----------VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (594)
Q Consensus 116 ~~~----------~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL 171 (594)
.|. ..|+.+++..+- +......+.-+|.+++..-+....|+..++-.-+..+|
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~---~~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQ---DSSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 331 125555555541 14455567777777777666666666666555554443
No 77
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=96.14 E-value=0.028 Score=55.61 Aligned_cols=113 Identities=17% Similarity=0.094 Sum_probs=83.1
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhh-cCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC---cCc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDA-AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG---AVD 196 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~-l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~---~~~ 196 (594)
+|+-+++-|. |.+..-.--|..++..+++. .++.+.|.+|+|+..|-++|++.+..+..++|.++.-++..+ |++
T Consensus 39 ~Lpif~dGL~-Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLR-ETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhh-ccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 7888888884 44444445566667777777 778889999999999999999999999999999998885332 344
Q ss_pred C-CchHHHHHHHHhhhcCC-------c----HHHHHHHHHHHHHHHHHcC
Q 007670 197 G-SGLKGLVSCLLGFLSSQ-------D----WAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 197 ~-pyf~~lm~~L~e~L~se-------D----w~lRKaAaDaLg~IA~a~g 234 (594)
+ ||+.+++|.+.-|.... | -.++-...|+|..+-..+|
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG 167 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG 167 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence 4 99999999999776533 2 2334445556666655555
No 78
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.12 E-value=0.16 Score=60.19 Aligned_cols=210 Identities=13% Similarity=0.134 Sum_probs=156.5
Q ss_pred CChhHHHHHHHHHHHHHhhc----CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---------------ccc
Q 007670 17 SDRDTYSQAAKELDSIAATV----DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---------------NLS 77 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~L----ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---------------~is 77 (594)
|..|-.-+|++.|--+...| .|+..+.+...+ +.+++ |..-+.+..+|.++...+ +-.
T Consensus 786 gs~dls~~al~~l~Wv~KaLl~R~~~~s~~ia~kll-d~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ 862 (1030)
T KOG1967|consen 786 GSLDLSEIALTVLAWVTKALLLRNHPESSEIAEKLL-DLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ 862 (1030)
T ss_pred CCcchhhHHHHHHHHHHHHHHHcCCcccchHHHHHH-HhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence 34444566666665544443 555544433322 22322 567778888888873332 223
Q ss_pred cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (594)
Q Consensus 78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~ 153 (594)
-+...|+|++++.+.-.+..++.--+.+|...-.+..++ | +..+++-|+++| +-.|..+|..+-.++.-++...+
T Consensus 863 RfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhcc
Confidence 356779999999999777778888888888777777654 2 345888899999 77899999999999999999888
Q ss_pred CCcchhHHHHHHHHHHHhcCCc---hhhHHHHHHHHHHHHhcCcC--cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007670 154 DPDAGKLGRMEVRLERLLKSEV---FKAKAAGLVVVGSVIGSGAV--DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWR 228 (594)
Q Consensus 154 ~~i~~yL~~L~~RL~klL~s~~---fkaK~alL~aIGSiA~a~~~--~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~ 228 (594)
.-..+|+..+.|.++.+=.+++ --++..+|.+++++...-.- ..||-+.++..|...|.+.-.-+||.|+++=+.
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 8888999999999999887775 34788999999999864322 359999999999999999999999999998654
Q ss_pred HH
Q 007670 229 LA 230 (594)
Q Consensus 229 IA 230 (594)
-.
T Consensus 1022 W~ 1023 (1030)
T KOG1967|consen 1022 WY 1023 (1030)
T ss_pred hh
Confidence 43
No 79
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=96.05 E-value=0.31 Score=56.57 Aligned_cols=158 Identities=13% Similarity=0.101 Sum_probs=101.3
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH-HhHHHHHHHHc-cCCChhHHHHHHHHHHHHHhhcCCCc
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALF-TEQDTNAQVGAALCLAATIDAAQDPD 156 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~-~~lkPL~eaL~-~eq~k~vQ~~Aa~ALaavvE~l~~~i 156 (594)
.+++|+|.|.+.++|.|..++..|+..++.+++.+. .+++ ..+-|.+..|. .+.+..++..+..|++.+++.++..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD-~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~- 463 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID-VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA- 463 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc-HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH-
Confidence 368899999999999999999999999999999994 3333 25555555553 5678889999999999999887642
Q ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH--hcCc-CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 157 AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI--GSGA-VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 157 ~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA--~a~~-~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
..-..+..+.++.+..+..++...+.++-.++ .-+| ++. ...++|.|..+...+-.. -..
T Consensus 464 --~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~--~~~VlPlli~ls~~~~L~-------------~~Q 526 (700)
T KOG2137|consen 464 --AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVM--AENVLPLLIPLSVAPSLN-------------GEQ 526 (700)
T ss_pred --HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeee--hhhhhhhhhhhhhccccc-------------HHH
Confidence 22223345667777777666655555554433 1122 222 345667775554433211 000
Q ss_pred CCccchhhhHHHHHHHhcchhH
Q 007670 234 KDAVPEFKGKCLKIFESKRFDK 255 (594)
Q Consensus 234 gd~f~py~~~~m~sLEs~RfDK 255 (594)
-.........++.++|..|.+|
T Consensus 527 y~~~m~~i~~ml~~ie~~~~~k 548 (700)
T KOG2137|consen 527 YNKYMSEIRLMLSAIEKPRANK 548 (700)
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 0112223466667777777766
No 80
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=95.92 E-value=0.18 Score=59.50 Aligned_cols=193 Identities=13% Similarity=0.129 Sum_probs=131.2
Q ss_pred cCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHH--Hhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670 36 VDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATL--SNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 36 Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl--ae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
+|-++ +..+++.+..-.+...+.+|-.-+.-+..+ +-.- -+..+-+..+|.|...-.|..-.||.|..+.+-+++.
T Consensus 429 ~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 429 LPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred CCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 34344 777777776666777888888888544333 1111 5666788889999999988878899999999999998
Q ss_pred hhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670 112 RVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 112 ~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~ 191 (594)
.+...-+...+.+|...-+.+..-.++.+|+++|.++++..+. .-+-..+.++++....++++..+.+.+.+|..+|.
T Consensus 509 q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~--~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~ 586 (759)
T KOG0211|consen 509 QLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGS--EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE 586 (759)
T ss_pred hhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCc--chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHH
Confidence 8852222224444444433344566888999999999999882 23567899999999999999999999999999997
Q ss_pred cCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 192 SGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 192 a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
+.|.- -+-..++|.+.+...+..=.+|--+|..|..+..
T Consensus 587 v~g~e-i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 587 VLGQE-ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred HhccH-HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 75431 1122234444444444444555555555544443
No 81
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.85 E-value=0.055 Score=52.10 Aligned_cols=145 Identities=12% Similarity=0.170 Sum_probs=87.5
Q ss_pred hHHHHHhhhhcCCCC-CCcchHHHHHHHHHHHhhhccccchHHHHHHHHhh--hcCCChhHHHHHHHHHHhhchhhhcch
Q 007670 41 LPTFLSCILSTNSSD-KPGVRKECIHVIATLSNSHNLSPYITKIINSITRN--FRDKNSALQATCISTVSSLSPRVGASA 117 (594)
Q Consensus 41 lp~fLs~L~e~~ss~-kp~~RKaaI~lLGvlae~h~isphLpkIL~~Ivrr--LkD~Ds~VR~Ac~~ALG~LAe~l~~~~ 117 (594)
.|.||..|.....+. .+..|+|++++||.|- ++.||--|.+.--... -.+.+....+......+... ..++-
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG---ALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILG---ALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISP--SSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc---ccCcHHHhcccccCCccccccccccchhhHHhhccCCC--chHHH
Confidence 566666665553333 4889999999999985 3566655522211111 12222333444333222210 00111
Q ss_pred hHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670 118 FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 118 ~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA 190 (594)
..+ .+.-|+..|-+..-......+..|+-.++..++....+||++++|.++..+.+..-..+..++.-++.++
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 112 5566666553222344555888888888988888889999999999999998654477777777766655
No 82
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.79 E-value=0.47 Score=56.42 Aligned_cols=190 Identities=16% Similarity=0.120 Sum_probs=136.1
Q ss_pred hHHHHHhhhhc-CCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH
Q 007670 41 LPTFLSCILST-NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119 (594)
Q Consensus 41 lp~fLs~L~e~-~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~ 119 (594)
+..||...... ..+.+++.|-.++++|.-.|.-|-+.|.+|+||-.|.....+...-|-.+-.+||...+..=++.+..
T Consensus 488 ~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as 567 (1005)
T KOG2274|consen 488 LQHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS 567 (1005)
T ss_pred HHHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh
Confidence 55555554333 45667899999999999989888888999999999999999999999999999999988877655433
Q ss_pred --HhHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhh----HHHHHHHHHHHHh
Q 007670 120 --TMLKLLSDALFT--EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKA----KAAGLVVVGSVIG 191 (594)
Q Consensus 120 --~~lkPL~eaL~~--eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fka----K~alL~aIGSiA~ 191 (594)
+.+-|++.++|- ..+|.|-.-+=-|+..+++++.- -.+|-..++|-|+..|..+.-++ ...++..|..+..
T Consensus 568 ~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~-~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 568 MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN-YGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 378888888873 45787766777777777775421 13677889999999998886333 4446666666665
Q ss_pred cCcCcC--CchHHHHHHHHhh-hcCCcHHHHHHHHHHHHHHHH
Q 007670 192 SGAVDG--SGLKGLVSCLLGF-LSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 192 a~~~~~--pyf~~lm~~L~e~-L~seDw~lRKaAaDaLg~IA~ 231 (594)
.++--. -....+.|.+..+ |+++|-++=-.|-|||.++-.
T Consensus 647 ~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 647 NTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred cCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 543321 1122233444333 677887777788888887665
No 83
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=95.65 E-value=0.052 Score=47.95 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=65.7
Q ss_pred hhhhcCCCCCCcchHHHHHHHHHHHhhhc-cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHH
Q 007670 47 CILSTNSSDKPGVRKECIHVIATLSNSHN-LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLL 125 (594)
Q Consensus 47 ~L~e~~ss~kp~~RKaaI~lLGvlae~h~-isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL 125 (594)
.+.....++.+|+|-+|+..|.-+.+... ..-+++.|+......|+|+|+=|--+|..+++.||+...+. +++-|
T Consensus 7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----vl~~L 82 (92)
T PF10363_consen 7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----VLPIL 82 (92)
T ss_pred HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH----HHHHH
Confidence 33444567889999999999999999884 77789999999999999999999999999999999998432 44445
Q ss_pred HHHH
Q 007670 126 SDAL 129 (594)
Q Consensus 126 ~eaL 129 (594)
++..
T Consensus 83 ~~~y 86 (92)
T PF10363_consen 83 LDEY 86 (92)
T ss_pred HHHH
Confidence 5444
No 84
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.36 E-value=0.59 Score=58.15 Aligned_cols=132 Identities=10% Similarity=0.187 Sum_probs=95.7
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCC
Q 007670 17 SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDK 94 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~ 94 (594)
-|+|+.+.++..| |.+-+=.+ |-++|..|.-....+.+..|--|+++|..+++.- .+- -.+.|...|.+|+.|+
T Consensus 792 ~d~~~a~li~~~l---a~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL-~~~dvq~~Vh~R~~Ds 867 (1692)
T KOG1020|consen 792 ADDDDAKLIVFYL---AHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL-SRPDVQEAVHGRLNDS 867 (1692)
T ss_pred ccchhHHHHHHHH---HhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh-cCHHHHHHHHHhhccc
Confidence 4556666655544 33334334 8889999988888999999999999999999988 332 3577888999999999
Q ss_pred ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670 95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (594)
Q Consensus 95 Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~ 154 (594)
..+||+|+++=+|++.-...+ -...|..-+.+-+. +..-.|-..+.--|..++|.-++
T Consensus 868 sasVREAaldLvGrfvl~~~e-~~~qyY~~i~erIl-DtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 868 SASVREAALDLVGRFVLSIPE-LIFQYYDQIIERIL-DTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred hhHHHHHHHHHHhhhhhccHH-HHHHHHHHHHhhcC-CCchhHHHHHHHHHHHHHHhCCC
Confidence 999999999999987766521 11126666666663 44555666777777778776554
No 85
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.69 Score=50.57 Aligned_cols=210 Identities=17% Similarity=0.199 Sum_probs=129.9
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----ccccchH
Q 007670 13 LNKLSDRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYIT 81 (594)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~LA~~L-------ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLp 81 (594)
|+|--|.-.++.|+..|-.|...- ..-.+|++++.+. +.++.+|..|-.+++.++-.. .++.-=|
T Consensus 175 LakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~----s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 175 LAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK----SGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc----cCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 444446668999999998887653 2333788777765 567789999999988884333 7777889
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH--H-hHHHHHHHHccCCChhHHHHHHHHHHHH-HhhcCCC-c
Q 007670 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV--T-MLKLLSDALFTEQDTNAQVGAALCLAAT-IDAAQDP-D 156 (594)
Q Consensus 82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~--~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaav-vE~l~~~-i 156 (594)
|++|.++....|+++.|.=-+--||+.||....-+-.+ + -++-+++.|...-.|-+- +...|+-.+ |--+.+. |
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plil-asVaCIrnisihplNe~lI 329 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLIL-ASVACIRNISIHPLNEVLI 329 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHH-HHHHHHhhcccccCcccce
Confidence 99999999999999999988889999999776322111 1 445555555222223222 333444222 1111222 2
Q ss_pred c--hhHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHHhcCcCc-CCchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 157 A--GKLGRMEVRLERLLKSEV-FKAKAAGLVVVGSVIGSGAVD-GSGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 157 ~--~yL~~L~~RL~klL~s~~-fkaK~alL~aIGSiA~a~~~~-~pyf~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
. ++|. .|+.+|.... -.+|-++.+.+.-+|....-. ..+++ ..+|.|++.+-+....+|..-.-|++.+|.
T Consensus 330 ~dagfl~----pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal 405 (550)
T KOG4224|consen 330 ADAGFLR----PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL 405 (550)
T ss_pred ecccchh----HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 1 2333 3455665443 337777888888777543222 22222 368888888877665555544444555544
No 86
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=1.7 Score=51.75 Aligned_cols=225 Identities=11% Similarity=0.093 Sum_probs=138.5
Q ss_pred HHHHhhcCCChh--HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchH
Q 007670 9 VNGLLNKLSDRD--TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT 81 (594)
Q Consensus 9 vl~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLp 81 (594)
+-.+++.+.|+. +.-.|+++|..++++=.+.. -.-+|....++..+.++++==-||+.+..||+.+ .| ||
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i---l~ 805 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI---LP 805 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh---HH
Confidence 444556666655 56677777777777543322 2334555566666777777777777777777764 22 22
Q ss_pred HHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC
Q 007670 82 KIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 82 kIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
.+.......=+- +|-.++ .-+|++.++... ++... +.-||+...+ .+++-..-++++..|..+++...-.
T Consensus 806 dL~e~Y~s~k~k~~~d~~lk--VGEai~k~~qa~--Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLK--VGEAILKVAQAL--GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHHHhcccCCCccceeh--HHHHHHHHHHHh--ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 222222211111 232221 114555555444 22222 5555555544 4666666788999999999887654
Q ss_pred cchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcC-cCC----chHHHHHHHHhhhcC-CcHHHHHHHHHHHHH
Q 007670 156 DAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAV-DGS----GLKGLVSCLLGFLSS-QDWAARKAAAEALWR 228 (594)
Q Consensus 156 i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~-~~p----yf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~ 228 (594)
.-..++.+...+..+...+ .+.+|.+++.+|..+-+.-|. ..| |.-.+...+..+... +|=.+|.-|+.+|-.
T Consensus 882 vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 882 VSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred hhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 4457888888888888776 888999999999987765443 345 333445555555554 567789999999998
Q ss_pred HHHHcC-Cccchh
Q 007670 229 LAVVEK-DAVPEF 240 (594)
Q Consensus 229 IA~a~g-d~f~py 240 (594)
|-.+.. ..+.|-
T Consensus 962 i~a~l~n~~~~pq 974 (982)
T KOG4653|consen 962 IQAALENDDDSPQ 974 (982)
T ss_pred HHHHHHhcccChh
Confidence 888765 566653
No 87
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.69 Score=54.86 Aligned_cols=186 Identities=13% Similarity=0.083 Sum_probs=138.5
Q ss_pred cCCCCCCcchHHHHHHHHHHHh--hhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHH
Q 007670 51 TNSSDKPGVRKECIHVIATLSN--SHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDA 128 (594)
Q Consensus 51 ~~ss~kp~~RKaaI~lLGvlae--~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~ea 128 (594)
+..++.++.|-+|++-|.-+.+ .+.-.-+..+++.+...-|+|-|+=|---|..++..||+.+.+ .+++-|.+.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----~il~dL~e~ 810 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----DILPDLSEE 810 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch----hhHHHHHHH
Confidence 3567889999999999999999 5533347899999999999999999999999999999999732 256666663
Q ss_pred HccCCChh---HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc-CcCCchHHHH
Q 007670 129 LFTEQDTN---AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLV 204 (594)
Q Consensus 129 L~~eq~k~---vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf~~lm 204 (594)
-..+++++ --...--|+-++++..++-...|+..|..-+.+-++.|.-.-|+..++.+|=+-+.-. ....+|-.+.
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~ 890 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVL 890 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 32333333 1112227788999999988889999999999999998866667777777776554321 1123566666
Q ss_pred HHHHhhhc-CCcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670 205 SCLLGFLS-SQDWAARKAAAEALWRLAVVEKDAVPEF 240 (594)
Q Consensus 205 ~~L~e~L~-seDw~lRKaAaDaLg~IA~a~gd~f~py 240 (594)
.++....+ +..-.+|.+|++.|..+-...|..+.|+
T Consensus 891 ~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpi 927 (982)
T KOG4653|consen 891 QLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPI 927 (982)
T ss_pred HHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHH
Confidence 66666655 5568899999999999998888666663
No 88
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.93 E-value=0.73 Score=51.85 Aligned_cols=256 Identities=16% Similarity=0.141 Sum_probs=150.4
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccc
Q 007670 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (594)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isph 79 (594)
+-.-++.+|..-....|.-.-++.|-.++++-|=++ +--|..++..++.+.++++|-.++.++|.++..|...|-
T Consensus 107 ~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pe 186 (728)
T KOG4535|consen 107 LHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPE 186 (728)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHH
Confidence 334456666666666666667777778888877666 445778899999999999999999999999999866565
Q ss_pred hHHHHHHH----------------HhhhcCCC------------------------------------------------
Q 007670 80 ITKIINSI----------------TRNFRDKN------------------------------------------------ 95 (594)
Q Consensus 80 LpkIL~~I----------------vrrLkD~D------------------------------------------------ 95 (594)
+.-.+..- .+.|-|.+
T Consensus 187 i~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~ 266 (728)
T KOG4535|consen 187 VQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTY 266 (728)
T ss_pred HHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCcc
Confidence 55554322 24444433
Q ss_pred --hhHHHHHHHHHHhhchhhhc--chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC--cc---hhHHHHHHH
Q 007670 96 --SALQATCISTVSSLSPRVGA--SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP--DA---GKLGRMEVR 166 (594)
Q Consensus 96 --s~VR~Ac~~ALG~LAe~l~~--~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~--i~---~yL~~L~~R 166 (594)
+.||--|...|..||.|+.= .-+.-+.+-+...+ ++..+.+|.-++.||+++...+... +. .-++.=+-+
T Consensus 267 ~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~-~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 267 EPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCM-GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 56777888888888888721 11111334344444 7889999999999999998887421 11 112211112
Q ss_pred HH--------HHhcCCchhhHHHHHHHHHHHHhcCcCcCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-C
Q 007670 167 LE--------RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-D 235 (594)
Q Consensus 167 L~--------klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d 235 (594)
+. .+-++..+-.|.++-.++.+|..+.-...|.-. ..+-.+..|-.+++--+|.+|+-+++.+..+.+ .
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr 425 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR 425 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence 22 223344455555544444433322211122211 122333334333445566677777776666555 2
Q ss_pred ccchhhhH----HHHHHHhcchhH-HHHHHh
Q 007670 236 AVPEFKGK----CLKIFESKRFDK-MIEAWK 261 (594)
Q Consensus 236 ~f~py~~~----~m~sLEs~RfDK-~i~lWk 261 (594)
...-|+.. ++.+|++.-|-| ..-+|.
T Consensus 426 ~d~~fv~~aa~~il~sl~d~~ln~r~Kaawt 456 (728)
T KOG4535|consen 426 QDVIFVADAANAILMSLEDKSLNVRAKAAWS 456 (728)
T ss_pred hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHH
Confidence 33334444 445666666666 555665
No 89
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.91 E-value=1.4 Score=47.58 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=114.4
Q ss_pred HHHHhhcC-CChhHHHHHHHHHHHHHhhcCCCC-------hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------
Q 007670 9 VNGLLNKL-SDRDTYSQAAKELDSIAATVDPTL-------LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------ 74 (594)
Q Consensus 9 vl~~L~KL-sDrDT~r~A~~eLD~LA~~Lppe~-------lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------ 74 (594)
.+.+++.. .|-+....|+++|..++.+++.-. +.+++. +..+.++..|+.|...+|.++.--
T Consensus 86 ~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~----~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~ 161 (342)
T KOG2160|consen 86 PIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLG----YLENSDAELRELAARVIGTAVQNNPKSQEQ 161 (342)
T ss_pred hhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHH----HhcCCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 66777766 488899999999999999986322 445444 566788999999999999996544
Q ss_pred -ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH-h-----HHHHHHHHc-cCCChhHHHHHHHHHH
Q 007670 75 -NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-M-----LKLLSDALF-TEQDTNAQVGAALCLA 146 (594)
Q Consensus 75 -~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~-----lkPL~eaL~-~eq~k~vQ~~Aa~ALa 146 (594)
+=.-.|++++..+. +|.+-.||..++.|++.|-.+- ++... | ..-|..+|- +..++..|..|+.=++
T Consensus 162 v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~--~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~ 236 (342)
T KOG2160|consen 162 VIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNN--KPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLS 236 (342)
T ss_pred HHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcC--cHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 22336777777666 6677789999999999887776 33222 1 223445552 2357778888888899
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHH
Q 007670 147 ATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVI 190 (594)
Q Consensus 147 avvE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA 190 (594)
.+++.....-...=..++++...-+.+. .+.++..++.++-+..
T Consensus 237 ~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 237 LLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred HHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 9988764332222222344433333333 5555666665555544
No 90
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.82 E-value=1.7 Score=52.33 Aligned_cols=165 Identities=15% Similarity=0.182 Sum_probs=98.1
Q ss_pred HHHHHHHHHH-hhcCCCC-hHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh-----ccccchHHHHHHHHhhhcCCC
Q 007670 24 QAAKELDSIA-ATVDPTL-LPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-----NLSPYITKIINSITRNFRDKN 95 (594)
Q Consensus 24 ~A~~eLD~LA-~~Lppe~-lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h-----~isphLpkIL~~IvrrLkD~D 95 (594)
-|...|-.++ ..++-.. +.-.+.+...... +..-++|=+|..+|-.+.+.+ .++||+|.||.-+.+..++-+
T Consensus 481 rac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 481 RACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcc
Confidence 3455555555 4454333 6666766666655 566799999999999985544 699999999999999999877
Q ss_pred hhHHHHHH-HHHHhhchhhhcchhHH-hHHHHHHHHc---------cCCChhHHHHHHHHH---HHHHhhcCCCc--chh
Q 007670 96 SALQATCI-STVSSLSPRVGASAFVT-MLKLLSDALF---------TEQDTNAQVGAALCL---AATIDAAQDPD--AGK 159 (594)
Q Consensus 96 s~VR~Ac~-~ALG~LAe~l~~~~~~~-~lkPL~eaL~---------~eq~k~vQ~~Aa~AL---aavvE~l~~~i--~~y 159 (594)
.-.-.-+. .-++.+++.+ .|+.. ++..|.+... .+.+..-|++|.+|| ..++..+++-+ ..+
T Consensus 561 nd~Lt~vme~iV~~fseEl--sPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~ 638 (1010)
T KOG1991|consen 561 NDDLTNVMEKIVCKFSEEL--SPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQ 638 (1010)
T ss_pred hhHHHHHHHHHHHHHHHhh--chhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 54322222 3346677777 45543 5555544442 111222334444444 45555554332 344
Q ss_pred HHH-HHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670 160 LGR-MEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 160 L~~-L~~RL~klL~s~~fkaK~alL~aIGSiA 190 (594)
+.. +.+=+...|++.-...-.-+++.+-+.-
T Consensus 639 le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t 670 (1010)
T KOG1991|consen 639 LEPIVLPVIGFILKNDITDFYEELLEIVSSLT 670 (1010)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhh
Confidence 433 5555666676665555555555544433
No 91
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=94.70 E-value=0.28 Score=52.77 Aligned_cols=116 Identities=13% Similarity=0.176 Sum_probs=68.9
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-------chhhHHHHHHHHHHHHhcC
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-------VFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-------~fkaK~alL~aIGSiA~a~ 193 (594)
|+.=+.+++.++ +... ..++++.+..+ +.|+.|+|+|+..+... +...-..++..+.|+..=.
T Consensus 179 yf~~It~a~~~~-~~~~-------r~~aL~sL~tD--~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~ 248 (343)
T cd08050 179 YFEEITEALVGS-NEEK-------RREALQSLRTD--PGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNP 248 (343)
T ss_pred HHHHHHHHHhCC-CHHH-------HHHHHHHhccC--CCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCC
Confidence 666677777542 2222 22233333222 23444444444444222 2333334555666666444
Q ss_pred cCcC-CchHHHHHHHHhhhc----------CCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670 194 AVDG-SGLKGLVSCLLGFLS----------SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK 246 (594)
Q Consensus 194 ~~~~-pyf~~lm~~L~e~L~----------seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~ 246 (594)
..+. ||+-.+||.+..||. .+.|.+|..|+..|+.|+...+....-....+++
T Consensus 249 ~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~ 312 (343)
T cd08050 249 NLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITR 312 (343)
T ss_pred CCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 4554 999999999999984 2569999999999999999877543333444443
No 92
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.60 E-value=0.49 Score=53.61 Aligned_cols=183 Identities=13% Similarity=0.146 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhhc-CCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc-----hHHHHHHHHh--
Q 007670 21 TYSQAAKELDSIAATV-DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY-----ITKIINSITR-- 89 (594)
Q Consensus 21 T~r~A~~eLD~LA~~L-ppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph-----LpkIL~~Ivr-- 89 (594)
+..-|++.|-.+...+ .|.. +..|+..+........+..|..|++++|.++..+ .-.+. +..+++.+.+
T Consensus 372 ~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l 451 (574)
T smart00638 372 TPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELL 451 (574)
T ss_pred CHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHH
Confidence 3344555566655555 2333 7777776655445556789999999999998733 11111 2444444444
Q ss_pred --hhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHH
Q 007670 90 --NFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRL 167 (594)
Q Consensus 90 --rLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL 167 (594)
..++.|...+.++..|||.+....+ ...+.|++..= .+....++..|..||.++.+..+. .+.+.|
T Consensus 452 ~~~~~~~~~~~~~~~LkaLGN~g~~~~----i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~p~-------~v~~~l 519 (574)
T smart00638 452 QQAVSKGDEEEIQLYLKALGNAGHPSS----IKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRDPR-------KVQEVL 519 (574)
T ss_pred HHHHhcCCchheeeHHHhhhccCChhH----HHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhCch-------HHHHHH
Confidence 4445677788999999999887661 11555555411 223567888999999988875443 233345
Q ss_pred HHHhcCC--chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHH
Q 007670 168 ERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAA 223 (594)
Q Consensus 168 ~klL~s~--~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-seDw~lRKaAa 223 (594)
+.++.+. +..++.+++-++- . .-|- ...+..|..++. ..+-+++....
T Consensus 520 ~~i~~n~~e~~EvRiaA~~~lm---~----t~P~-~~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 520 LPIYLNRAEPPEVRMAAVLVLM---E----TKPS-VALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHcCCCCChHHHHHHHHHHH---h----cCCC-HHHHHHHHHHHhhcCcHHHHHHhH
Confidence 5555443 6666766443332 1 1143 255666666665 45777776554
No 93
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=94.57 E-value=0.5 Score=48.99 Aligned_cols=142 Identities=11% Similarity=0.028 Sum_probs=97.1
Q ss_pred HHhhhcC-CChhHHHHHHHHHHhhchhhhcchhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC--cchhHH
Q 007670 87 ITRNFRD-KNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP--DAGKLG 161 (594)
Q Consensus 87 IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~--i~~yL~ 161 (594)
++..|+. .|+.++..++.|+|..+.+-..+..+. =..+++..|+..+++.++..|..||+.+-.+.+.. +..|++
T Consensus 17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~ 96 (254)
T PF04826_consen 17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP 96 (254)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 3344453 689999999999999988875444332 34455556658889999999999999775544322 245777
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 162 ~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
.+|..+.-. .-+....-+.+.+++.+. +-......+...|+.+...|...+-.+|-.++-+|.-++.
T Consensus 97 ~Vc~~~~s~--~lns~~Q~agLrlL~nLt-v~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 97 QVCEETVSS--PLNSEVQLAGLRLLTNLT-VTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHHHhcC--CCCCHHHHHHHHHHHccC-CCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 777766542 113445667777777664 2222234455567788888888888889899999988886
No 94
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.53 E-value=0.19 Score=45.30 Aligned_cols=89 Identities=15% Similarity=0.194 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHhcC----CchhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 158 GKLGRMEVRLERLLKS----EVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 158 ~yL~~L~~RL~klL~s----~~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
+++--++.++...+++ .+..-|..++.+|+.++..++.. .++.+++|.+|+..|..+ ++|..|+++...+...
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHH
Confidence 4555677788777776 47777999999999999877665 488999999999999887 8999999999999999
Q ss_pred cC-CccchhhhHHHHHH
Q 007670 233 EK-DAVPEFKGKCLKIF 248 (594)
Q Consensus 233 ~g-d~f~py~~~~m~sL 248 (594)
+. +.+.|+.+.+..++
T Consensus 85 L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 85 LDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 87 68888888887654
No 95
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.49 E-value=0.9 Score=52.07 Aligned_cols=210 Identities=12% Similarity=0.111 Sum_probs=129.3
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
+..|.+.|....++---.+--|+-+++-.+++...-..++...++.+.-.|+-+.++.|-+|...|.+||-.. +..+.
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~--P~kv~ 339 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY--PQKVS 339 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC--Cceee
Confidence 4444555555444433456677777776666666445568899999999999999999999999999999887 33345
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL 200 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf 200 (594)
.+.|=+|.|+.+.|+++. -||+..++-.-.++-...|-.+++-++-=+ +++||. .++.||.|+.- -|+.--
T Consensus 340 vcN~evEsLIsd~Nr~Is---tyAITtLLKTGt~e~idrLv~~I~sfvhD~-SD~FKi--I~ida~rsLsl---~Fp~k~ 410 (898)
T COG5240 340 VCNKEVESLISDENRTIS---TYAITTLLKTGTEETIDRLVNLIPSFVHDM-SDGFKI--IAIDALRSLSL---LFPSKK 410 (898)
T ss_pred ecChhHHHHhhcccccch---HHHHHHHHHcCchhhHHHHHHHHHHHHHhh-ccCceE--EeHHHHHHHHh---hCcHHH
Confidence 888999999888888764 566666665544432333333333322222 346653 46777777652 122111
Q ss_pred HHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH-HHHHHh
Q 007670 201 KGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK-MIEAWK 261 (594)
Q Consensus 201 ~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK-~i~lWk 261 (594)
...+.-|...|-+ ..+.-.+++.|+|..+....++.=.--.+.++.-+|.|.|-+ +.....
T Consensus 411 ~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~ 473 (898)
T COG5240 411 LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILG 473 (898)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 2233333333333 357777888888877766554322222344556777888877 444333
No 96
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.31 E-value=1.9 Score=51.24 Aligned_cols=216 Identities=15% Similarity=0.096 Sum_probs=132.8
Q ss_pred CChhHH-HHHHHHHHHHHhhcCCCChHHHHHhhhhc------CCCCCCcchHHHHHHHHHHHhh----------------
Q 007670 17 SDRDTY-SQAAKELDSIAATVDPTLLPTFLSCILST------NSSDKPGVRKECIHVIATLSNS---------------- 73 (594)
Q Consensus 17 sDrDT~-r~A~~eLD~LA~~Lppe~lp~fLs~L~e~------~ss~kp~~RKaaI~lLGvlae~---------------- 73 (594)
+|-||+ |.|.+.+..|..+......+.|-..+... ..+-+|-.+--+|-++..++.-
T Consensus 373 sDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 373 SDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred CCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Confidence 577775 56667777799999655466665554332 3466777777777777665322
Q ss_pred ----h--cccc-------------------------------chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc-
Q 007670 74 ----H--NLSP-------------------------------YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA- 115 (594)
Q Consensus 74 ----h--~isp-------------------------------hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~- 115 (594)
+ .+.| ||=.++|.+++.|+-+..+|+.=++.++-.+-.....
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~ 532 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS 532 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Confidence 1 2223 3445788888999888889988777666554322211
Q ss_pred ----------chhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh----cCC-chhhH
Q 007670 116 ----------SAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL----KSE-VFKAK 179 (594)
Q Consensus 116 ----------~~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL----~s~-~fkaK 179 (594)
.|+. .++..||+++- -+++.=-.=..-|+-+++--+++.+.|+.+.++.+|.+.+ ++| +.+.-
T Consensus 533 ~~~if~~~~iap~~~~ll~nLf~a~s-~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fn 611 (960)
T KOG1992|consen 533 NAKIFGAEDIAPFVEILLTNLFKALS-LPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFN 611 (960)
T ss_pred cccccchhhcchHHHHHHHHHHHhcc-CCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhH
Confidence 1222 27777777773 2222111123456778888888888888888777777666 555 44444
Q ss_pred HHHHHHHHHHHhc-CcCc---C-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 180 AAGLVVVGSVIGS-GAVD---G-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 180 ~alL~aIGSiA~a-~~~~---~-pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
--+...||.++.- .+.. . .+-.+++|.++..|..+-.+.=--+...|+.+....
T Consensus 612 HYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~ 670 (960)
T KOG1992|consen 612 HYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHS 670 (960)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5588899988843 3332 2 334456788777777665444445556666666553
No 97
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.29 E-value=0.19 Score=45.25 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670 55 DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (594)
Q Consensus 55 ~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL 129 (594)
.....|+.++++++.+.+.+ .+++++|+|+.++...|..+ .+|..|+.+-..|...+.......++..++.++
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l 101 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAIL 101 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 44577999999999998866 99999999999999999887 899999999999999885433223444444443
No 98
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.28 E-value=1.7 Score=41.84 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=101.3
Q ss_pred ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH----HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007670 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (594)
Q Consensus 77 sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~----~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l 152 (594)
...+++++.-|...|+++++.-|-+.+.-++.++++..-+.+. ..+.-|+..|-....+.+-..|+.+|..+++.+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999998888888886323332 266666666633445667779999999999987
Q ss_pred CCCc-------chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhh
Q 007670 153 QDPD-------AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFL 211 (594)
Q Consensus 153 ~~~i-------~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L 211 (594)
...+ .|.++++.+-++++++. ......++.++..+... ...|.||...+-..+.++|
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 4332 47889999999999975 33566788999988854 4557799888877777665
No 99
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.96 Score=54.74 Aligned_cols=149 Identities=18% Similarity=0.141 Sum_probs=105.9
Q ss_pred cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCC-hhHHHHHHHHHHHHHhhcCCCc
Q 007670 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQD-TNAQVGAALCLAATIDAAQDPD 156 (594)
Q Consensus 78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~-k~vQ~~Aa~ALaavvE~l~~~i 156 (594)
-.++.++-++...|+|.|+.||--+++.+|.++..+...=...++.-.++ +++..+ ..+=-|||+|||.+--. .-+
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~r--GlL 413 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAEDDSAWHGACLALAELALR--GLL 413 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhc--CCc
Confidence 45778888999999999999999999999999999952112237777777 444433 55556999999988542 112
Q ss_pred c-hhHHHHHHHHHHHhcC--------CchhhHHHHHHHHHHHHhcCcC--cCCchHHHHHHHHh-hhcCCcHHHHHHHHH
Q 007670 157 A-GKLGRMEVRLERLLKS--------EVFKAKAAGLVVVGSVIGSGAV--DGSGLKGLVSCLLG-FLSSQDWAARKAAAE 224 (594)
Q Consensus 157 ~-~yL~~L~~RL~klL~s--------~~fkaK~alL~aIGSiA~a~~~--~~pyf~~lm~~L~e-~L~seDw~lRKaAaD 224 (594)
. ..+..++|=+.|.|.- .+-+++-++.-++=|++.+-.- ..||+..+.++|.- .+-+.+-..|.||.-
T Consensus 414 lps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 414 LPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 2 2466677777777742 2445777877788888877533 24888777766644 466889999999887
Q ss_pred HHHHH
Q 007670 225 ALWRL 229 (594)
Q Consensus 225 aLg~I 229 (594)
||...
T Consensus 494 AlqE~ 498 (1133)
T KOG1943|consen 494 ALQEN 498 (1133)
T ss_pred HHHHH
Confidence 77554
No 100
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=3.8 Score=48.35 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=110.6
Q ss_pred hHHHHHhhhhcC----C---C-CCCcchHHHHHHHHHHHhhh-ccccc---hHH-HHHHHHhhhcCCChhHHHHHHHHHH
Q 007670 41 LPTFLSCILSTN----S---S-DKPGVRKECIHVIATLSNSH-NLSPY---ITK-IINSITRNFRDKNSALQATCISTVS 107 (594)
Q Consensus 41 lp~fLs~L~e~~----s---s-~kp~~RKaaI~lLGvlae~h-~isph---Lpk-IL~~IvrrLkD~Ds~VR~Ac~~ALG 107 (594)
|..+|+.+.+.. . + .++.+...|++.|+.+-..- ..+|. |+. |+++|.-.++++---++.-+|+.+.
T Consensus 406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 555555554432 1 1 33555677889888887632 33333 333 4567777889998889999999999
Q ss_pred hhchhhhcchhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--CCCcchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 007670 108 SLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAA--QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLV 184 (594)
Q Consensus 108 ~LAe~l~~~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l--~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~ 184 (594)
.+.+...+..... .+......| .++.-.|++-||.||.-++-+. .+..-+++|.+|++|++|-+.=...+ +-+
T Consensus 486 ~~eeDfkd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~---LS~ 561 (970)
T COG5656 486 TIEEDFKDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP---LSM 561 (970)
T ss_pred HHHHhcccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH---HHH
Confidence 9977775554332 555555555 4588889999999999999875 33345789999999999875433333 233
Q ss_pred HHHHHH-hcCcCcCCchHHHHHHHHh
Q 007670 185 VVGSVI-GSGAVDGSGLKGLVSCLLG 209 (594)
Q Consensus 185 aIGSiA-~a~~~~~pyf~~lm~~L~e 209 (594)
+.-+++ +=+.+..||.+.++..|.+
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~ 587 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVR 587 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHH
Confidence 333333 2234556999888888876
No 101
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.11 E-value=0.43 Score=47.24 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhchhhhcc----------hhH-----HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--------C
Q 007670 98 LQATCISTVSSLSPRVGAS----------AFV-----TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--------D 154 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~----------~~~-----~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~--------~ 154 (594)
||.++...|..++...... |.. ..-.+|+..++.|+++.+..+|+.+|+.++|+.. .
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 6777888887777775321 111 1445666777788999999999999999999851 1
Q ss_pred C-c-ch------hHHH----HHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcC--c-CCchHHHHHHHHhhhcCCcHHH
Q 007670 155 P-D-AG------KLGR----MEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAV--D-GSGLKGLVSCLLGFLSSQDWAA 218 (594)
Q Consensus 155 ~-i-~~------yL~~----L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~--~-~pyf~~lm~~L~e~L~seDw~l 218 (594)
. . .. .|.. +=..|..+|..+ +...-.+++-+++.++++-.= . ..++..++..+..++.+.|-++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1 0 11 1222 222356666655 666677788888888866422 1 3778889999999999999999
Q ss_pred HHHHHHHHHHHHHHc
Q 007670 219 RKAAAEALWRLAVVE 233 (594)
Q Consensus 219 RKaAaDaLg~IA~a~ 233 (594)
|-++.-+|+.+..+.
T Consensus 162 ~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 162 RVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999998764
No 102
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=93.99 E-value=0.21 Score=45.36 Aligned_cols=56 Identities=13% Similarity=0.193 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc
Q 007670 58 GVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115 (594)
Q Consensus 58 ~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~ 115 (594)
..||.+|++++.+.+.+ .++.++|+|+.++...|..|+ +|..|+.+...|-..+.+
T Consensus 30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHhCCH
Confidence 45999999999998877 999999999999999998776 999999999999888853
No 103
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.97 E-value=3.5 Score=48.71 Aligned_cols=229 Identities=18% Similarity=0.230 Sum_probs=134.4
Q ss_pred CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHH--------HHHH
Q 007670 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCI--------STVS 107 (594)
Q Consensus 37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~--------~ALG 107 (594)
.|+-+.+|++.|.+.+.+..+++||.||++++.+-.-. .+-|--|.|+....-+=+||. .-|+|-. .|+.
T Consensus 128 E~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~Dps-CkRNAFi~L~~~D~ErAl~ 206 (948)
T KOG1058|consen 128 EPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPS-CKRNAFLMLFTTDPERALN 206 (948)
T ss_pred cHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCch-hHHHHHHHHHhcCHHHHHH
Confidence 45558899999999999999999999999999986555 666889999987776655554 1233321 1222
Q ss_pred hhchhhhc----------------------ch-hHH-hHHHHHHHHcc----------------CCChhHHHHHHHHHHH
Q 007670 108 SLSPRVGA----------------------SA-FVT-MLKLLSDALFT----------------EQDTNAQVGAALCLAA 147 (594)
Q Consensus 108 ~LAe~l~~----------------------~~-~~~-~lkPL~eaL~~----------------eq~k~vQ~~Aa~ALaa 147 (594)
-|...+.+ .| ... |++-++..|.. .++|.+-.+|+.|+-.
T Consensus 207 Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~ 286 (948)
T KOG1058|consen 207 YLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYID 286 (948)
T ss_pred HHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHH
Confidence 22222211 01 111 55555555531 3577777788888877
Q ss_pred HHhhcCCCcc----------------hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-------------------
Q 007670 148 TIDAAQDPDA----------------GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS------------------- 192 (594)
Q Consensus 148 vvE~l~~~i~----------------~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a------------------- 192 (594)
+++...+--. ..|..|.--++.+|+++++.++.-.++.+=-++..
T Consensus 287 l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~ 366 (948)
T KOG1058|consen 287 LLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHN 366 (948)
T ss_pred HHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccc
Confidence 7776533211 12455555688889888766544443322222211
Q ss_pred --------------------CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH-HHHH--
Q 007670 193 --------------------GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL-KIFE-- 249 (594)
Q Consensus 193 --------------------~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m-~sLE-- 249 (594)
+--|+.+...+++.|.+||.+..- ++|.+.|.-|-.+. +.|......++ +.+|
T Consensus 367 ~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~---~aas~vl~FvrE~i-ek~p~Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 367 EESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNE---AAASDVLMFVREAI-EKFPNLRASIIEKLLETF 442 (948)
T ss_pred cccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHH-HhCchHHHHHHHHHHHhh
Confidence 111334555677888888876543 34677766665543 33443444444 3333
Q ss_pred -hcchhH------------------HHHHHhhcCCCCCCC
Q 007670 250 -SKRFDK------------------MIEAWKQVPDLSEEA 270 (594)
Q Consensus 250 -s~RfDK------------------~i~lWk~i~~v~~~~ 270 (594)
..|--| ....||.|--.++++
T Consensus 443 ~~irS~ki~rgalwi~GeYce~~~~i~~~~k~i~~slGEv 482 (948)
T KOG1058|consen 443 PQIRSSKICRGALWILGEYCEGLSEIQSVIKIIRQSLGEV 482 (948)
T ss_pred hhhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 223333 557899887777666
No 104
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=1.5 Score=47.37 Aligned_cols=190 Identities=16% Similarity=0.172 Sum_probs=123.1
Q ss_pred hHHHHHhh---hhcCCCCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 41 LPTFLSCI---LSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 41 lp~fLs~L---~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
+..++..+ ..+.++.++..|..|+--|..+++.. .+.+ +. -|..+...|+++++.||..|++++|..+..=
T Consensus 78 ~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~-~g-gl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNN 155 (342)
T KOG2160|consen 78 ISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLIS-LG-GLVPLLGYLENSDAELRELAARVIGTAVQNN 155 (342)
T ss_pred HHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh-cc-CHHHHHHHhcCCcHHHHHHHHHHHHHHHhcC
Confidence 44455552 22245666777888888899988877 2222 22 2333444999999999999999999999887
Q ss_pred hcch-hH--H-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHHHHhcC--CchhhHHHHHHHH
Q 007670 114 GASA-FV--T-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKS--EVFKAKAAGLVVV 186 (594)
Q Consensus 114 ~~~~-~~--~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~klL~s--~~fkaK~alL~aI 186 (594)
.+.- .. . ++..|+..|..+..-++-..|.+|+-..|-+-.+.....+.- =..-|..+|.+ ...+.|.-++-+|
T Consensus 156 P~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll 235 (342)
T KOG2160|consen 156 PKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLL 235 (342)
T ss_pred HHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 5421 11 1 899999999655555566899999999999865444332211 02235666766 4566666677778
Q ss_pred HHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 187 GSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 187 GSiA~a~~~~~pyf~~--lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
+.+...-..-.-.+.. .-..+..+....+|+.+-.|.+++-+....
T Consensus 236 ~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 236 SLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 8777553221111111 123445556677899999999998888775
No 105
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=93.95 E-value=3.6 Score=43.71 Aligned_cols=173 Identities=16% Similarity=0.137 Sum_probs=92.7
Q ss_pred cchHHHHHHHHHHHhhhcc-ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc---chhH-HhHHHHHHHHc--
Q 007670 58 GVRKECIHVIATLSNSHNL-SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFV-TMLKLLSDALF-- 130 (594)
Q Consensus 58 ~~RKaaI~lLGvlae~h~i-sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~---~~~~-~~lkPL~eaL~-- 130 (594)
....+.+.+|+.-+. ++ ..--++++.++.++++|..+.||++-+..+|.+...... ..+. .|+++|++.+-
T Consensus 38 ~aL~~~l~al~~~~~--~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 115 (339)
T PF12074_consen 38 AALSALLSALFKHLF--FLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEA 115 (339)
T ss_pred HHHHHHHHHHHHHHH--HhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHH
Confidence 344444444443222 33 445678899999999999999999999999998761100 1122 25666665552
Q ss_pred -cCCChhHH---HHHHHHHHHHHhh--------------cCCCcchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHh
Q 007670 131 -TEQDTNAQ---VGAALCLAATIDA--------------AQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 131 -~eq~k~vQ---~~Aa~ALaavvE~--------------l~~~i~~yL~~L~~RL~klL-~s~~fkaK~alL~aIGSiA~ 191 (594)
..+-+.+| ..+|+|+..+... +-....+.+ .+=+|++..| ..+... -++-++-+++.
T Consensus 116 ~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~-ll~~kvyskl~~~~d~~---w~~~al~~~~~ 191 (339)
T PF12074_consen 116 SANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSF-LLSEKVYSKLASEEDLC---WLLRALEALLS 191 (339)
T ss_pred HhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcch-hcCHHHHhccCCHhHHH---HHHHHHHHHHh
Confidence 23344444 3455555551110 000001110 1233555553 222332 23333333332
Q ss_pred c-CcCcCCc-hHHHHHHHHhhhcCC--cHHHHHHHHHHHHHHHHHcCCc
Q 007670 192 S-GAVDGSG-LKGLVSCLLGFLSSQ--DWAARKAAAEALWRLAVVEKDA 236 (594)
Q Consensus 192 a-~~~~~py-f~~lm~~L~e~L~se--Dw~lRKaAaDaLg~IA~a~gd~ 236 (594)
. ....... ....-+.+.-++.+. .|.+|+.|.++|..+....+..
T Consensus 192 ~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 192 DHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 1 1111111 234456666667776 8999999999999998776544
No 106
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=93.95 E-value=0.31 Score=51.92 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCcCcC-CchHHHHHHHHhhhc-----C-----CcHHHHHHHHHHHHHHHHHcCC---ccchhh
Q 007670 181 AGLVVVGSVIGSGAVDG-SGLKGLVSCLLGFLS-----S-----QDWAARKAAAEALWRLAVVEKD---AVPEFK 241 (594)
Q Consensus 181 alL~aIGSiA~a~~~~~-pyf~~lm~~L~e~L~-----s-----eDw~lRKaAaDaLg~IA~a~gd---~f~py~ 241 (594)
.++..+.|+-.---.|. ||+.++||.|..||- + +.+++|+.|++.|+.+..-.+. .+.|.+
T Consensus 255 Tv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRv 329 (450)
T COG5095 255 TVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRV 329 (450)
T ss_pred HHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHH
Confidence 35556666655555675 999999999999974 2 2488999999999999887664 444443
No 107
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.90 E-value=0.8 Score=53.96 Aligned_cols=212 Identities=13% Similarity=0.145 Sum_probs=116.6
Q ss_pred HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhcccc-chHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 007670 32 IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP-YITKIINSITRNFRDKNSALQATCISTVSSLS 110 (594)
Q Consensus 32 LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isp-hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LA 110 (594)
+..-.+||..+-+.+.+.+-.++++|++||-|+++.- +.|...| .++-+++.-.++|.|.+.+|--|.+.-+-.++
T Consensus 131 lg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~---r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 131 LGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAV---RFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred hhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHH---HHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHH
Confidence 3333467778888888888888888888888877643 3333333 45556666777888888776555444444443
Q ss_pred hhhhc----------------------------------chhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670 111 PRVGA----------------------------------SAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 111 e~l~~----------------------------------~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
+.-.+ .||-. -+.-|+..| |..++..-...+--|+.+.-+.+.-
T Consensus 208 ~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL-Gq~d~daSd~M~DiLaqvatntdss 286 (866)
T KOG1062|consen 208 KISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL-GQNDADASDLMNDILAQVATNTDSS 286 (866)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhccccc
Confidence 33110 01111 111122222 5555655566666666666654322
Q ss_pred c-c--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc----------------hHHHHHHHHhhhcCCcH
Q 007670 156 D-A--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG----------------LKGLVSCLLGFLSSQDW 216 (594)
Q Consensus 156 i-~--~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py----------------f~~lm~~L~e~L~seDw 216 (594)
- . .+|-.-+..+..+...+.. +..++.+||-.-.--.-..-| ...==..+.+||.+.|=
T Consensus 287 kN~GnAILYE~V~TI~~I~~~~~L--rvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~ 364 (866)
T KOG1062|consen 287 KNAGNAILYECVRTIMDIRSNSGL--RVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDV 364 (866)
T ss_pred ccchhHHHHHHHHHHHhccCCchH--HHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcH
Confidence 1 1 1233322223333322222 223344444322211111111 11112356788889999
Q ss_pred HHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhc
Q 007670 217 AARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESK 251 (594)
Q Consensus 217 ~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~ 251 (594)
..|+-|+|.+..|.- ..+++..+.++|.-||.+
T Consensus 365 SIkrralELs~~lvn--~~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 365 SIKRRALELSYALVN--ESNVRVMVKELLEFLESS 397 (866)
T ss_pred HHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHhc
Confidence 999999999888744 268899999999999999
No 108
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.88 Score=56.68 Aligned_cols=187 Identities=19% Similarity=0.139 Sum_probs=133.5
Q ss_pred HHHHHHHHhhcCCChh--HHHHHHHHHHHHHhhcCCCChH----HHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--cc
Q 007670 5 LKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTLLP----TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NL 76 (594)
Q Consensus 5 Lk~rvl~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~lp----~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~i 76 (594)
+...+..++-||+=|| |.--|+++|-.+....+.+.+- .+...+.+..-+++..+|.+..-.|-.+.... .+
T Consensus 39 ~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 39 LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888998788 8999999999999988766622 23344456677888999999999999999988 89
Q ss_pred ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH-HhHHHHHHHH-----cc------------------C
Q 007670 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDAL-----FT------------------E 132 (594)
Q Consensus 77 sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~-~~lkPL~eaL-----~~------------------e 132 (594)
+|||..++|.+.=...|++..|..|+..+.-...+.- +.+.. .++.|-+..+ .+ .
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~e-k~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~ 197 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEE-KDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELES 197 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhcChh-hhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHH
Confidence 9999999999999999999999999998877665511 11211 1222222222 10 1
Q ss_pred CChhHHHHHHHHHHHHHh-hcCCCcch---h-H--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 133 QDTNAQVGAALCLAATID-AAQDPDAG---K-L--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 133 q~k~vQ~~Aa~ALaavvE-~l~~~i~~---y-L--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
.-+-|-..+..+|.++.. ..++.... + + ..--..+-++++++...+|.+++.++-++...
T Consensus 198 k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~ 264 (1312)
T KOG0803|consen 198 KYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDD 264 (1312)
T ss_pred hhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhh
Confidence 123344578888888874 33333222 2 2 22445789999999988999988888877744
No 109
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=1.2 Score=51.84 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=111.1
Q ss_pred HHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc----h-
Q 007670 43 TFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----A- 117 (594)
Q Consensus 43 ~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~----~- 117 (594)
.+..+|..+..+.++.+|++|+..|=.|.+|.-+. .-+..-.++.++|.+..||.||+..+--++..++-+ .
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~ 274 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESE 274 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhccccccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhh
Confidence 45566777888899999999999999998876332 235677889999999999999988887777766311 0
Q ss_pred ----hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHH------------------------
Q 007670 118 ----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLE------------------------ 168 (594)
Q Consensus 118 ----~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~------------------------ 168 (594)
....+.-+..++ .+-.-.|-.-||-+|--|-+...+.+.+-|.+ +|.|+-
T Consensus 275 e~kl~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 275 EEKLKDAAFSSVCRAV-RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhHHHHHHHHHHHH-hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 112555566666 22222222234444443333322222333333 444221
Q ss_pred --------------------------HHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHH
Q 007670 169 --------------------------RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAA 222 (594)
Q Consensus 169 --------------------------klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaA 222 (594)
--|...-+.++.|++..++++|... +.+....+..|.+.+.++.-.+|--|
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss---P~FA~~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS---PGFAVRALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHhccHHHHHHHHH
Confidence 1111222345666666666665433 12334466777777777788888888
Q ss_pred HHHHHHHHHH
Q 007670 223 AEALWRLAVV 232 (594)
Q Consensus 223 aDaLg~IA~a 232 (594)
+-+|-.|+..
T Consensus 431 i~aL~~Is~~ 440 (823)
T KOG2259|consen 431 IFALTMISVH 440 (823)
T ss_pred HHHHHHHHHH
Confidence 8888888775
No 110
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=93.68 E-value=0.54 Score=56.01 Aligned_cols=124 Identities=16% Similarity=0.141 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCc---
Q 007670 141 AALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQD--- 215 (594)
Q Consensus 141 Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seD--- 215 (594)
=-.+|.-++-+.+.++ .|.++.|+|-|++.|..++.-+|-..+.+|--.-.-.+. -.-|+..++|.+...=.+.|
T Consensus 887 yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~ 966 (1030)
T KOG1967|consen 887 YLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNM 966 (1030)
T ss_pred HHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcch
Confidence 3567888898888665 789999999999999999999988888888765533333 34888888888877655555
Q ss_pred HHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhH----------HHHHHhhcC
Q 007670 216 WAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK----------MIEAWKQVP 264 (594)
Q Consensus 216 w~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK----------~i~lWk~i~ 264 (594)
..+|-.|+.+|+.|++..+ ..+.||....+++|+-+==|| +-+.|-.+-
T Consensus 967 ~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~l~ 1026 (1030)
T KOG1967|consen 967 MVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYMLG 1026 (1030)
T ss_pred hHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhhcc
Confidence 7899999999999999887 799999999999999887777 677776553
No 111
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=93.38 E-value=0.08 Score=40.22 Aligned_cols=27 Identities=11% Similarity=0.363 Sum_probs=24.2
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHHHHH
Q 007670 80 ITKIINSITRNFRDKNSALQATCISTV 106 (594)
Q Consensus 80 LpkIL~~IvrrLkD~Ds~VR~Ac~~AL 106 (594)
.+.|+..|.++|.|+++.||+|+++.+
T Consensus 16 ~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 16 SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 358999999999999999999999764
No 112
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.36 E-value=4.9 Score=50.57 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCChhH--------------------HHHHHHHHHHHHhhc--CCCChHHHHHhhhhcCCCCCCcchH
Q 007670 4 ALKTSVNGLLNKLSDRDT--------------------YSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRK 61 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrDT--------------------~r~A~~eLD~LA~~L--ppe~lp~fLs~L~e~~ss~kp~~RK 61 (594)
.||.+.|.||+.+-.-|+ +.+==..||.+.+.+ .|+.++-+..||.+-+..+--.+||
T Consensus 831 alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~erIlDtgvsVRK 910 (1692)
T KOG1020|consen 831 ALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIERILDTGVSVRK 910 (1692)
T ss_pred HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcCCCchhHHH
Confidence 578888888887755441 111112345555553 4666999999999999889999999
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670 62 ECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (594)
Q Consensus 62 aaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L 109 (594)
.+|+.+--+|+..-=-+-.+.|..-+++|+.|-+..|.+-.++++--|
T Consensus 911 RvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 911 RVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999999922256788999999999999999999999888654
No 113
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.20 E-value=2.3 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=22.4
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 201 ~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g 234 (594)
..+++-++.|+.+.|...=.+|..+||.-|...+
T Consensus 391 ~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~ 424 (968)
T KOG1060|consen 391 SEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG 424 (968)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC
Confidence 3445566667777777666677777777776544
No 114
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.13 E-value=0.4 Score=51.90 Aligned_cols=207 Identities=10% Similarity=0.125 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhh--cCC-------CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch---HHHHHHHH
Q 007670 21 TYSQAAKELDSIAAT--VDP-------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI---TKIINSIT 88 (594)
Q Consensus 21 T~r~A~~eLD~LA~~--Lpp-------e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL---pkIL~~Iv 88 (594)
.+..|+-....+-.- -|| -.+|.|+..+-+ ++.-...-+|--+|..+++|-.-.+++ ---+|..+
T Consensus 87 ~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~---~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi 163 (526)
T COG5064 87 QQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDE---IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI 163 (526)
T ss_pred HHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHh---cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence 555666666654321 133 226777777643 223344457778888888887111111 23467788
Q ss_pred hhhcCCChhHHHHHHHHHHhhchhhhcchhHH----hHHHHHHHHccCCChhH--HHHHHHHHHHHHhhcCCCc-chhHH
Q 007670 89 RNFRDKNSALQATCISTVSSLSPRVGASAFVT----MLKLLSDALFTEQDTNA--QVGAALCLAATIDAAQDPD-AGKLG 161 (594)
Q Consensus 89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~----~lkPL~eaL~~eq~k~v--Q~~Aa~ALaavvE~l~~~i-~~yL~ 161 (594)
..|.+++.-||+.++||||.+|-....--..+ .|.||+..|. .+..++ -..|---|-.++.+-.+++ -.-..
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~-ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is 242 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL-SSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS 242 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH-hccchHHHHHHhHHHHHHhhCCCCCCCchHHHH
Confidence 89999999999999999999997764222222 7899998884 344433 3366667888888765554 45688
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc-CCchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 162 ~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~-~pyf~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
+.+|-|.||+.+.+..+-.-+.=||+=+.-...+. ...++ .+++.|.+.|++++-.+..-|+-++|-|.+
T Consensus 243 qalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVT 314 (526)
T COG5064 243 QALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVT 314 (526)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeee
Confidence 88999999998887765333333444443222221 12222 256889999998876665556656555544
No 115
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.06 E-value=7.5 Score=39.54 Aligned_cols=204 Identities=19% Similarity=0.173 Sum_probs=113.7
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhh
Q 007670 13 LNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNF 91 (594)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrL 91 (594)
+.|-.|.......++.|-.++.+=. ..+++++..|..-...++...+--+++++..+...- -.-|+|.+++-....+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~ 87 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRI 87 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhc
Confidence 5555555566666666666666543 448888888876655555555556778888876555 33389998888755442
Q ss_pred c----CCChh--HHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 007670 92 R----DKNSA--LQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV 165 (594)
Q Consensus 92 k----D~Ds~--VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~ 165 (594)
. +.+.. +.=++..++..++....+ ....++++|..-|-++.+..+|.-|.-+|+.++++---++.....-|.+
T Consensus 88 ~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~ 166 (234)
T PF12530_consen 88 PSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQK 166 (234)
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 2 22222 333444455555555533 2223666666666356677788777778888886533222333333444
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHH----hcCcCcC---CchHHHHHHHHhhhcCCc-------HHHHHHHHHH
Q 007670 166 RLERLLKSEVFKAKAAGLVVVGSVI----GSGAVDG---SGLKGLVSCLLGFLSSQD-------WAARKAAAEA 225 (594)
Q Consensus 166 RL~klL~s~~fkaK~alL~aIGSiA----~a~~~~~---pyf~~lm~~L~e~L~seD-------w~lRKaAaDa 225 (594)
+| ..+ -++.++..+.++. +.+-+.. .....++..+-+|....+ -.+|.+|.++
T Consensus 167 ~l----~~~---~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~~~~~~~~~~~~a~~a 233 (234)
T PF12530_consen 167 KL----SLD---YRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVNVASQWTSVRLAAFEA 233 (234)
T ss_pred hc----CCc---cchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccchHHHHHHHHHHHHhc
Confidence 44 222 3445555444444 2222222 334446677767766554 3455555544
No 116
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=2 Score=48.38 Aligned_cols=230 Identities=18% Similarity=0.143 Sum_probs=122.0
Q ss_pred HHHHHHHHhhcCCChh--HHHHHHHHHHHHHhhcCCCC---hHHHHHhhh-hcCCCCCCcchHHHHHHHHHHHhhh---c
Q 007670 5 LKTSVNGLLNKLSDRD--TYSQAAKELDSIAATVDPTL---LPTFLSCIL-STNSSDKPGVRKECIHVIATLSNSH---N 75 (594)
Q Consensus 5 Lk~rvl~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~---lp~fLs~L~-e~~ss~kp~~RKaaI~lLGvlae~h---~ 75 (594)
|+.-++...+|..|.+ -.+.|+.-|-.+|.-.|... .+..+..|. .-....+..+-=++|.+|..+.+-. -
T Consensus 256 L~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~ 335 (533)
T KOG2032|consen 256 LGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD 335 (533)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc
Confidence 4455555666666666 45566666666666544222 223333221 1111223566667777777765544 5
Q ss_pred cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch---hHH----hHHHHHHHHccCCChhHHH-HHHHHHHH
Q 007670 76 LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FVT----MLKLLSDALFTEQDTNAQV-GAALCLAA 147 (594)
Q Consensus 76 isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~---~~~----~lkPL~eaL~~eq~k~vQ~-~Aa~ALaa 147 (594)
+.+|+-.|-=.+...+.|-++.+|-|+-..+|+|+....++. |.. -+.||+..| +|++.+. .||.....
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl---~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHL---QDPNPYVARACRSELR 412 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeee---CCCChHHHHHHHHHHH
Confidence 666666666666666667778888888888888888886543 221 244666555 4555553 56666555
Q ss_pred HH-hhcC-CCcchhHHH----HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhh---hcCCcH-H
Q 007670 148 TI-DAAQ-DPDAGKLGR----MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGF---LSSQDW-A 217 (594)
Q Consensus 148 vv-E~l~-~~i~~yL~~----L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~---L~seDw-~ 217 (594)
++ +++. ++...|+++ .++|+.++.+. + ++ + ..+|++.++-.+... +-+.-| .
T Consensus 413 ~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~--~-c~-----------~----L~~i~~d~l~~~~t~~~~~f~sswe~ 474 (533)
T KOG2032|consen 413 TCYPNLVRKELYHLFQESLDTDMARFQAFYNQ--W-CI-----------Q----LNHIHPDILMLLLTEDQHIFSSSWEQ 474 (533)
T ss_pred hcCchhHHHHHHHHHhhhhHHhHHHHHHHHHH--H-HH-----------H----HhhhCHHHHHHHHHhchhheecchHH
Confidence 53 2221 111233332 22333333211 0 00 0 113344433333221 224568 6
Q ss_pred HHHHHHHHHHHHHHHcCCccchhhhH--HHHHHHhcchhH
Q 007670 218 ARKAAAEALWRLAVVEKDAVPEFKGK--CLKIFESKRFDK 255 (594)
Q Consensus 218 lRKaAaDaLg~IA~a~gd~f~py~~~--~m~sLEs~RfDK 255 (594)
+|.+|.-..+.+-..+-+..-+|+.- +.+.|...++|-
T Consensus 475 vr~aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp 514 (533)
T KOG2032|consen 475 VREAAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDP 514 (533)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCC
Confidence 67777766666666655555566533 337888888875
No 117
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=92.76 E-value=0.43 Score=43.38 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 158 GKLGRMEVRLERLLKSEV----FKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 158 ~yL~~L~~RL~klL~s~~----fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
+++--++.++...+++.. +.-|...+-+|+-++...|.. ..+.+++|-||+..|..++ +|..|++++..+...
T Consensus 7 ~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~e--L~~~al~~W~~~i~~ 84 (107)
T smart00802 7 DHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPE--LRSLALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHHHh
Confidence 566678888888887665 334888899999999876654 5889999999999998776 999999999999998
Q ss_pred cC-CccchhhhHHHHHH
Q 007670 233 EK-DAVPEFKGKCLKIF 248 (594)
Q Consensus 233 ~g-d~f~py~~~~m~sL 248 (594)
+. +.+.|..+.++.++
T Consensus 85 L~~~~l~~ll~~~~~~i 101 (107)
T smart00802 85 LKEEELGPLLDQIFAAI 101 (107)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 87 67888777777554
No 118
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.75 E-value=1 Score=51.23 Aligned_cols=181 Identities=12% Similarity=0.115 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHhhc-CCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----------------ccccchH
Q 007670 21 TYSQAAKELDSIAATV-DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----------------NLSPYIT 81 (594)
Q Consensus 21 T~r~A~~eLD~LA~~L-ppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----------------~isphLp 81 (594)
+..-|++.|-.++..+ -|.. +..|+..+........+..|..|++.+|.++..+ ....+++
T Consensus 410 ~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~ 489 (618)
T PF01347_consen 410 TDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVP 489 (618)
T ss_dssp -HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTH
T ss_pred CHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHH
Confidence 5555777787887777 5555 5555555533222345689999999999995544 2223566
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC--CChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE--QDTNAQVGAALCLAATIDAAQDPDAGK 159 (594)
Q Consensus 82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e--q~k~vQ~~Aa~ALaavvE~l~~~i~~y 159 (594)
.+...+.......|...+-+++.|||.+...- .++.|...+.++ ....++..|..||.++.+. +
T Consensus 490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~-------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-------~ 555 (618)
T PF01347_consen 490 YLEQELKEAVSRGDEEEKIVYLKALGNLGHPE-------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-------C 555 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GG-------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhccCCch-------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-------C
Confidence 66666666666788889999999999998644 333344444333 4566777888888877542 2
Q ss_pred HHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC-CcHHHHHHHH
Q 007670 160 LGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS-QDWAARKAAA 223 (594)
Q Consensus 160 L~~L~~RL~klL~s~--~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~s-eDw~lRKaAa 223 (594)
-.++.+-|+.++.+. +..++.|++.+|= .. .|- ...+..|..+|.. .+-+++....
T Consensus 556 ~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm---~~----~P~-~~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 556 PEKVREILLPIFMNTTEDPEVRIAAYLILM---RC----NPS-PSVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp HHHHHHHHHHHHH-TTS-HHHHHHHHHHHH---HT--------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred cHHHHHHHHHHhcCCCCChhHHHHHHHHHH---hc----CCC-HHHHHHHHHHHhhCchHHHHHHHH
Confidence 334555666677554 5667766554332 11 133 3556677777754 4577666543
No 119
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=92.68 E-value=2.7 Score=46.94 Aligned_cols=209 Identities=11% Similarity=0.080 Sum_probs=118.6
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcC-CChhHHHHHHHHHHhhchhhhc-c
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGA-S 116 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~-~ 116 (594)
+..++..|....+.++.+.=|.-+|.+.++.++. +....|+++..++..-.+. .++..-+=+.+++|.+-.+..+ +
T Consensus 28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~ 107 (435)
T PF03378_consen 28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEAD 107 (435)
T ss_dssp HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCC
Confidence 5555666654444667778888888888876665 3333344444444444444 4578899999999999998764 2
Q ss_pred hh-----HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHHh--cCCchhhHHHHHHHHHH
Q 007670 117 AF-----VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERLL--KSEVFKAKAAGLVVVGS 188 (594)
Q Consensus 117 ~~-----~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~klL--~s~~fkaK~alL~aIGS 188 (594)
+. ...|-|.|..++.+.-....-=++.-|+-++|.-+ +++.+....|.+.|+.-. .... --++++-++.+
T Consensus 108 ~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~g--niPalvrLL~a 185 (435)
T PF03378_consen 108 PEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRG--NIPALVRLLQA 185 (435)
T ss_dssp HH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTT--THHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCC--CcCcHHHHHHH
Confidence 32 23444444444432212222234556777888866 344333333333332211 1111 12567777777
Q ss_pred HHhcCcC-c--CCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHH----HHHhcchhH
Q 007670 189 VIGSGAV-D--GSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLK----IFESKRFDK 255 (594)
Q Consensus 189 iA~a~~~-~--~pyf~~lm~~L~e~L~s--eDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~----sLEs~RfDK 255 (594)
.+..+.. + .+++..++...+..+.+ .|-. +.+.|.+|-...+ +.+.||...++. =|.+.|=+|
T Consensus 186 ~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~----gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~k 258 (435)
T PF03378_consen 186 YIKKDPSFIVANNQLEPILGVFQKLIASKANDHY----GFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEK 258 (435)
T ss_dssp HHHHHGGG----S-CHHHHHHHHHHHT-TTCHHH----HHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HH
T ss_pred HHHhCchhhcchhhHHHHHHHHHHHHCCCCcchH----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHH
Confidence 7755433 2 37889999999988876 3544 7899999999886 688888877664 344556666
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.51 E-value=2.1 Score=50.70 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=79.7
Q ss_pred HHHHHhhcC-CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchH-HHHHHHHhhhcCCChhHHHHHHHHH
Q 007670 29 LDSIAATVD-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT-KIINSITRNFRDKNSALQATCISTV 106 (594)
Q Consensus 29 LD~LA~~Lp-pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLp-kIL~~IvrrLkD~Ds~VR~Ac~~AL 106 (594)
++.|..++. .+.++-+++-+.....+-+.-.||=+..-+-+.++.+ |++- --++++.+-|+||++-+|..|..+|
T Consensus 40 mK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~---P~~~lLavNti~kDl~d~N~~iR~~AlR~l 116 (757)
T COG5096 40 MKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLK---PELALLAVNTIQKDLQDPNEEIRGFALRTL 116 (757)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 444444442 2236655555555544666677777666666666655 2221 2345677777777777777777777
Q ss_pred HhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH--HHHHHHHhcCCchhhHHHHHH
Q 007670 107 SSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM--EVRLERLLKSEVFKAKAAGLV 184 (594)
Q Consensus 107 G~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L--~~RL~klL~s~~fkaK~alL~ 184 (594)
+.+-..-. ...++.|+-..+ ++.++.|-..||+|+.++-+--+ .+++.+ +.-+-.++...+..+++.++.
T Consensus 117 s~l~~~el---~~~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~----~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~ 188 (757)
T COG5096 117 SLLRVKEL---LGNIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDK----DLYHELGLIDILKELVADSDPIVIANALA 188 (757)
T ss_pred HhcChHHH---HHHHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCH----hhhhcccHHHHHHHHhhCCCchHHHHHHH
Confidence 76543321 111555555555 56666677777777777765322 233332 333334444445555554443
Q ss_pred H
Q 007670 185 V 185 (594)
Q Consensus 185 a 185 (594)
+
T Consensus 189 s 189 (757)
T COG5096 189 S 189 (757)
T ss_pred H
Confidence 3
No 121
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=92.22 E-value=2 Score=50.70 Aligned_cols=176 Identities=16% Similarity=0.166 Sum_probs=101.5
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH--HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK--IINSITRNFRDKNSALQATCISTVSSLSPRVGASA- 117 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk--IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~- 117 (594)
++.++..+. +.+...+..++++|..|+-..-+.++|-+ ++|.++..|+|++ .|..|...|-.||..=.-..
T Consensus 333 V~kL~kLl~----s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~ 406 (708)
T PF05804_consen 333 VEKLLKLLP----SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM 406 (708)
T ss_pred HHHHHHHhc----CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH
Confidence 777666664 35567899999999999776644445544 5666667777654 66677777777776321111
Q ss_pred hH--HhHHHHHHHHccCCChhHHH---HHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670 118 FV--TMLKLLSDALFTEQDTNAQV---GAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 118 ~~--~~lkPL~eaL~~eq~k~vQ~---~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~ 191 (594)
+. ..++.|+..|+..++..++. +.+.=|+.--.++.-.. ...|+.|+.|.++ ..+ +.++-+|.-|++
T Consensus 407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~---~~D----~lLlKlIRNiS~ 479 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALK---TRD----PLLLKLIRNISQ 479 (708)
T ss_pred HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHh---ccc----HHHHHHHHHHHh
Confidence 21 15666677776545555543 22222222222221111 1457778877654 222 456778888886
Q ss_pred cCcCcCCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHH
Q 007670 192 SGAVDGSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 192 a~~~~~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a 232 (594)
-.+....-|...|.-|...+.. +++. ..+|+||.+|-.
T Consensus 480 h~~~~k~~f~~~i~~L~~~v~~~~~ee---~~vE~LGiLaNL 518 (708)
T PF05804_consen 480 HDGPLKELFVDFIGDLAKIVSSGDSEE---FVVECLGILANL 518 (708)
T ss_pred cCchHHHHHHHHHHHHHHHhhcCCcHH---HHHHHHHHHHhc
Confidence 6544322233344444445554 3343 579999999975
No 122
>PF05536 Neurochondrin: Neurochondrin
Probab=92.12 E-value=21 Score=41.10 Aligned_cols=190 Identities=14% Similarity=0.064 Sum_probs=125.7
Q ss_pred HHHHHhhhhcCCCCCC-cchHHHHHHHHHHHhhh-----ccccchHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhh
Q 007670 42 PTFLSCILSTNSSDKP-GVRKECIHVIATLSNSH-----NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVG 114 (594)
Q Consensus 42 p~fLs~L~e~~ss~kp-~~RKaaI~lLGvlae~h-----~isphLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~ 114 (594)
+.||.-|.-+...+.. +..-..-+++.+|+..| .-.|.+-.-+|.++.-+..++. .+-.=|...|..++.+=
T Consensus 52 ~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~- 130 (543)
T PF05536_consen 52 FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP- 130 (543)
T ss_pred hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-
Confidence 3577777665444332 22223333344455555 5578899999999999988777 66666777777776322
Q ss_pred cch--hHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc----chhHHHHHHHHHHHhcCCchhhHHHHHHHH
Q 007670 115 ASA--FVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD----AGKLGRMEVRLERLLKSEVFKAKAAGLVVV 186 (594)
Q Consensus 115 ~~~--~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i----~~yL~~L~~RL~klL~s~~fkaK~alL~aI 186 (594)
++. +.. .++.|++.+.+ .+..+.-|...|..++-..+... ...+..++++|.+.+...+-..|-.++..+
T Consensus 131 ~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L 208 (543)
T PF05536_consen 131 EGAKALLESGAVPALCEIIPN--QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFL 208 (543)
T ss_pred HhHHHHHhcCCHHHHHHHHHh--CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 222 222 78899999853 44445566666666666654322 345778889999999877777788899999
Q ss_pred HHHHhcCc---Cc----CCchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHHHcC
Q 007670 187 GSVIGSGA---VD----GSGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 187 GSiA~a~~---~~----~pyf~~lm~~L~e~L~se-Dw~lRKaAaDaLg~IA~a~g 234 (594)
+.+..-.. .. ......+...|...|.+. .-.-|..|+...+.+..+.|
T Consensus 209 ~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 209 SAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred HHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 99874432 11 145566666777777653 45669999999999999887
No 123
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.84 E-value=0.64 Score=52.25 Aligned_cols=196 Identities=15% Similarity=0.154 Sum_probs=134.2
Q ss_pred cCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670 36 VDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (594)
Q Consensus 36 Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L 109 (594)
||.++ .+.|+.=. ..+.+..+|-++++++||.+=-| -..-+...-...|.+.|-|..-.+|.-+.+++|.+
T Consensus 384 lpn~~~T~~~~Fl~GC---~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnI 460 (728)
T KOG4535|consen 384 LPNDRQTLCITFLLGC---NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNI 460 (728)
T ss_pred CCCcchhhhHHHHhcc---cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhh
Confidence 55533 55554433 35677899999999999987655 22334555566777888888888999999999999
Q ss_pred chhhhcc-hh--HH---hHHHHHHHHc-----cC-CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHH-HHHHhc---C
Q 007670 110 SPRVGAS-AF--VT---MLKLLSDALF-----TE-QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVR-LERLLK---S 173 (594)
Q Consensus 110 Ae~l~~~-~~--~~---~lkPL~eaL~-----~e-q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~R-L~klL~---s 173 (594)
.+.+... |. +. +.--+++++. -+ .+-.|-..|.-+|-...+.+...+..-+..+++- +.+++. .
T Consensus 461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~ 540 (728)
T KOG4535|consen 461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLT 540 (728)
T ss_pred HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceec
Confidence 9999763 21 11 3333334333 11 2334777888899888888766555666666664 444443 2
Q ss_pred C-chhhHHHHHHHHHHHHhcCcC-c--CCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcC
Q 007670 174 E-VFKAKAAGLVVVGSVIGSGAV-D--GSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 174 ~-~fkaK~alL~aIGSiA~a~~~-~--~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~g 234 (594)
+ .|++|.-+-.+||-++.-..- + .+....+.+.|...+.+ ..+-+|..|+-+|...+.-.+
T Consensus 541 ~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 541 EAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred ccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 3 778898888999998865543 2 26666677777777664 678899999999888777554
No 124
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.81 E-value=0.43 Score=52.03 Aligned_cols=128 Identities=16% Similarity=0.269 Sum_probs=80.5
Q ss_pred CChhHHHHHH-HHHHHHHhhcCCCChHHHHHhhhhc------CCCCCCcchHHHHHHHHHHHhhh--------ccccc--
Q 007670 17 SDRDTYSQAA-KELDSIAATVDPTLLPTFLSCILST------NSSDKPGVRKECIHVIATLSNSH--------NLSPY-- 79 (594)
Q Consensus 17 sDrDT~r~A~-~eLD~LA~~Lppe~lp~fLs~L~e~------~ss~kp~~RKaaI~lLGvlae~h--------~isph-- 79 (594)
+|-+|.|.|+ .-|..++........+.++.++... ..+.+|..+-.||.++|.++.-. -+.++
T Consensus 222 sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~ 301 (370)
T PF08506_consen 222 SDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVD 301 (370)
T ss_dssp S---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-
T ss_pred cccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCccccccccc
Confidence 5666666555 5555688887765566666665543 34677888999999999995544 11122
Q ss_pred hHHHH-HHHHhhhc---CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHH
Q 007670 80 ITKII-NSITRNFR---DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCL 145 (594)
Q Consensus 80 LpkIL-~~IvrrLk---D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~AL 145 (594)
+..++ .+|.--|+ ...+.+|..|++.+..+..++.++-...+++.|+..| +.++..|..=||.|+
T Consensus 302 v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L-~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 302 VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHL-QSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHT-TSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCCcchhhhhhhhC
Confidence 22222 23334455 3446799999999999999996555556888888888 677777887777775
No 125
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.76 E-value=6.7 Score=46.60 Aligned_cols=206 Identities=14% Similarity=0.128 Sum_probs=123.6
Q ss_pred cCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 36 VDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 36 Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
|+.++ +--+.++|..-+.|.+-++--.|+-+||.+|..- ..+.+.|-|.+.|+-+++-||+=|+-++.++-...
T Consensus 98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~E----mardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~ 173 (866)
T KOG1062|consen 98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPE----MARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKV 173 (866)
T ss_pred hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHH----HhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 35555 5556678877788888777777777777664332 23556677778888899999987665555444333
Q ss_pred hcchh-HH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC--------------------------------Ccchh
Q 007670 114 GASAF-VT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD--------------------------------PDAGK 159 (594)
Q Consensus 114 ~~~~~-~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~--------------------------------~i~~y 159 (594)
|. .. |+.+.-..| .+++..|-+++..=+-.+|+.-++ ...|+
T Consensus 174 ---P~l~e~f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 174 ---PDLVEHFVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred ---chHHHHhhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchH
Confidence 32 22 555555555 667666665433333333333111 11345
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-------CcCc--------------CCchHHHHHHHHhhhcCCcHHH
Q 007670 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-------GAVD--------------GSGLKGLVSCLLGFLSSQDWAA 218 (594)
Q Consensus 160 L~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-------~~~~--------------~pyf~~lm~~L~e~L~seDw~l 218 (594)
|+--+=||+++|...+-.+....-..++=+|.= |.+. .+-..-.+.+|..||.+.|-.+
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~Ni 329 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNI 329 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccce
Confidence 555555666666666666655555555555521 1110 1222334677788888888888
Q ss_pred HHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670 219 RKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (594)
Q Consensus 219 RKaAaDaLg~IA~a~gd~f~py~~~~m~sLE 249 (594)
|=.|+++|.++.......++.+..-++..|+
T Consensus 330 rYvaLn~L~r~V~~d~~avqrHr~tIleCL~ 360 (866)
T KOG1062|consen 330 RYVALNMLLRVVQQDPTAVQRHRSTILECLK 360 (866)
T ss_pred eeeehhhHHhhhcCCcHHHHHHHHHHHHHhc
Confidence 8888888888877766677777655555555
No 126
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=91.46 E-value=2.6 Score=40.65 Aligned_cols=146 Identities=10% Similarity=0.110 Sum_probs=90.5
Q ss_pred HHHHHHHHhhhcCCC-hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC--Ccc
Q 007670 81 TKIINSITRNFRDKN-SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD--PDA 157 (594)
Q Consensus 81 pkIL~~IvrrLkD~D-s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~--~i~ 157 (594)
|.++..+.+-|+-.. ..+|..+...+|.|..-=. . ..+-....+ .+...+.....+-+...-..+. ...
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP---~--~~k~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~e 80 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGALDP---Y--KHKSIQKSL---DSKSSENSNDESTDISLPMMGISPSSE 80 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCc---H--HHhcccccC---CccccccccccchhhHHhhccCCCchH
Confidence 677777777777654 6899999999999986431 0 111000000 0111111122222222222221 234
Q ss_pred hhHHH-HHHHHHHHhcCCchhh-HHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670 158 GKLGR-MEVRLERLLKSEVFKA-KAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 158 ~yL~~-L~~RL~klL~s~~fka-K~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g 234 (594)
+|.+. .+.-|.+.|+.++..- +.+++.||-.|.+..+.- .||++.+||.+...+..-+-.+|..-.--|+.|..+++
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ivk 160 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIVK 160 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 56555 7778899998874442 446888888888665443 59999999999999984333888888888888877653
No 127
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.45 E-value=2 Score=48.97 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=72.1
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC--------chhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE--------VFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~--------~fkaK~alL~aIGSiA~a 192 (594)
|++=+.+++.+ .+..--..|..+| ..+ +-|+.|+|+|+.++... ++..=.-++-.+.|+..=
T Consensus 208 Yy~~It~a~~g-~~~~~r~eAL~sL-------~TD--sGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 208 YYKEITEACTG-SDEPLRQEALQSL-------ETD--SGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHhh-------ccC--ccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 78888888865 3333222333333 222 35666666666666322 222222344455555544
Q ss_pred CcCcC-CchHHHHHHHHhhhcC----------CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670 193 GAVDG-SGLKGLVSCLLGFLSS----------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK 246 (594)
Q Consensus 193 ~~~~~-pyf~~lm~~L~e~L~s----------eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~ 246 (594)
-..|. ||+-.+||++.-|+.+ +.|++|..|++.|..|....++........+.+
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~ 342 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITR 342 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55565 9999999999999752 469999999999999998777543333334443
No 128
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=91.26 E-value=18 Score=43.21 Aligned_cols=145 Identities=16% Similarity=0.097 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChh
Q 007670 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~ 97 (594)
|-.-.|+=--.|...|+.=|. ..--.++.+...+++++|..|--||+-++.+=.. ..++.+++.|.+-|.|+.+-
T Consensus 68 d~ElKrL~ylYl~~yak~~P~-~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~----el~~~~~~~ik~~l~d~~ay 142 (757)
T COG5096 68 DVELKRLLYLYLERYAKLKPE-LALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVK----ELLGNIIDPIKKLLTDPHAY 142 (757)
T ss_pred CHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChH----HHHHHHHHHHHHHccCCcHH
Confidence 333555666666677765553 3333367777778999999999999999887433 35688899999999999999
Q ss_pred HHHHHHHHHHhhchhhhcchhHHh-HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670 98 LQATCISTVSSLSPRVGASAFVTM-LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~~~~~~-lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL 171 (594)
||+.|+.|++.+-..--+-.. .. +--+...|..+.+|.|-..|..+|..+.+. ...+|+..++.++-.+.
T Consensus 143 VRk~Aalav~kly~ld~~l~~-~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e---~a~~~~~~~~~~i~~l~ 213 (757)
T COG5096 143 VRKTAALAVAKLYRLDKDLYH-ELGLIDILKELVADSDPIVIANALASLAEIDPE---LAHGYSLEVILRIPQLD 213 (757)
T ss_pred HHHHHHHHHHHHHhcCHhhhh-cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh---hhhhHHHHHHHHhhhcc
Confidence 999999999987643311110 11 222334444688999988877777766654 34678877777666544
No 129
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.20 E-value=9.8 Score=45.78 Aligned_cols=246 Identities=16% Similarity=0.188 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCC----CCCCcch-HHHHHHHHHHHhhh--ccccchHHHHHHHHh-hh
Q 007670 21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNS----SDKPGVR-KECIHVIATLSNSH--NLSPYITKIINSITR-NF 91 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~s----s~kp~~R-KaaI~lLGvlae~h--~isphLpkIL~~Ivr-rL 91 (594)
.+|-+..++-.-.=++-.+. +..+..-|.+... +|+.-.| .+|+-.|-.+++.. --.+.+++++..+-+ .+
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~ 518 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKL 518 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccccc
Confidence 44555444433332322344 5555555544433 3343334 45555666566655 777888888876543 34
Q ss_pred cCCChhHHHHHHHHHHhhchhhhcchhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670 92 RDKNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (594)
Q Consensus 92 kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k 169 (594)
.-+.+..-+.|.+++|.++.|+.+.|+.. .++-||.+| +..+--+| |..-|.+++|...+...||...++.-...
T Consensus 519 S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~L-h~sk~s~q--~i~tl~tlC~~C~~~L~py~d~~~a~~~e 595 (982)
T KOG2022|consen 519 SAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGL-HNSKESEQ--AISTLKTLCETCPESLDPYADQFSAVCYE 595 (982)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHh-cCchHHHH--HHHHHHHHHHhhhhhCchHHHHHHHHHHH
Confidence 55688889999999999999998888654 777777887 32333334 33349999999999999999888887777
Q ss_pred HhcCCchh--hHHHHHHHHHHHHhcCc--CcCCchHHHHHHHHhh----hcC--CcHHHHHHH---HHHHHHHHHHc-C-
Q 007670 170 LLKSEVFK--AKAAGLVVVGSVIGSGA--VDGSGLKGLVSCLLGF----LSS--QDWAARKAA---AEALWRLAVVE-K- 234 (594)
Q Consensus 170 lL~s~~fk--aK~alL~aIGSiA~a~~--~~~pyf~~lm~~L~e~----L~s--eDw~lRKaA---aDaLg~IA~a~-g- 234 (594)
.++....+ .+..++.+||=+.+.-. +-.-|+..++..+.+- |.. ++.+-|-.. ..++..+++.. +
T Consensus 596 ~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~ 675 (982)
T KOG2022|consen 596 VLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINK 675 (982)
T ss_pred HhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCC
Confidence 77655333 35568888887775532 2345655555444333 322 233333222 23455555531 1
Q ss_pred ----Cccchhhh-------HHHHHHH--hcchhHHHHHHhhcCCCCCC
Q 007670 235 ----DAVPEFKG-------KCLKIFE--SKRFDKMIEAWKQVPDLSEE 269 (594)
Q Consensus 235 ----d~f~py~~-------~~m~sLE--s~RfDK~i~lWk~i~~v~~~ 269 (594)
+.=+|... +.+.++. =+=|+|....|-...+|-|.
T Consensus 676 ~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~ 723 (982)
T KOG2022|consen 676 KDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEA 723 (982)
T ss_pred CccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 11111111 2333332 35577877788877766543
No 130
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=91.06 E-value=1.2 Score=54.67 Aligned_cols=167 Identities=14% Similarity=0.076 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhhcCCC---ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHH----hhh-ccccchHHHHHHHHhhhc
Q 007670 21 TYSQAAKELDSIAATVDPT---LLPTFLSCILSTNSSDKPGVRKECIHVIATLS----NSH-NLSPYITKIINSITRNFR 92 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe---~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvla----e~h-~isphLpkIL~~IvrrLk 92 (594)
+.+-|-..|..|++.+-++ .+|.|-+||....+..-+.. -+-+..|++.= ..| .+.| +-..+|.+..-++
T Consensus 749 errgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFVR 826 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhcc
Confidence 4666777788888887543 26666566544322211111 25566666552 222 4445 5556677777888
Q ss_pred CCChhHHHHHHHHHHhhchhhhcchhHH---hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670 93 DKNSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (594)
Q Consensus 93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~---~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k 169 (594)
-+++.||-||..++|-++.-.+...... -+.|+++++- +-+-|.+|-..+..+.+.+.-.+.+|.+.|.+-|+.
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~---~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr 903 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLD---KFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLR 903 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchh---hHhhhhhHHHHHHHHHHhhcccccccceeehhhhhc
Confidence 8999999999999999998887654333 5667766662 333444555555666666666778999999999999
Q ss_pred HhcCCchhhHHHHHHHHHHHHhc
Q 007670 170 LLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 170 lL~s~~fkaK~alL~aIGSiA~a 192 (594)
.+..+.=-++.++-.+.+.++-.
T Consensus 904 ~msd~~d~vR~aat~~fa~lip~ 926 (1549)
T KOG0392|consen 904 RMSDQIDSVREAATKVFAKLIPL 926 (1549)
T ss_pred ccccchHHHHHHHHHHHHHHhcc
Confidence 99877666788888888888754
No 131
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.04 E-value=18 Score=43.73 Aligned_cols=257 Identities=15% Similarity=0.181 Sum_probs=150.7
Q ss_pred HHHHHHHHhh--cCC--ChhHHHHHHHHHHHHHhhc--CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--cc
Q 007670 5 LKTSVNGLLN--KLS--DRDTYSQAAKELDSIAATV--DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NL 76 (594)
Q Consensus 5 Lk~rvl~~L~--KLs--DrDT~r~A~~eLD~LA~~L--ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~i 76 (594)
|-.|+++... |++ .-++.+.+.+.+..++.-| .|-.+++.|+.|.+.+..++ .=.+++.-+-.+|+.| -+
T Consensus 505 ~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk--~s~q~i~tl~tlC~~C~~~L 582 (982)
T KOG2022|consen 505 WIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSK--ESEQAISTLKTLCETCPESL 582 (982)
T ss_pred HHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCch--HHHHHHHHHHHHHHhhhhhC
Confidence 3345554443 334 7789999999999999888 45558888888877765333 4556777799999999 89
Q ss_pred ccchHHHHHHHHhhhcCCC--hhHHHHHHHHHHhhchhhhcchh-H-----HhHHHHHHHHcc-----CCChh------H
Q 007670 77 SPYITKIINSITRNFRDKN--SALQATCISTVSSLSPRVGASAF-V-----TMLKLLSDALFT-----EQDTN------A 137 (594)
Q Consensus 77 sphLpkIL~~IvrrLkD~D--s~VR~Ac~~ALG~LAe~l~~~~~-~-----~~lkPL~eaL~~-----eq~k~------v 137 (594)
.||+..+++++...+.-.. .++|-....++|-+-..+- |+ . .++.|++..|-. -+++. .
T Consensus 583 ~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~--pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~ 660 (982)
T KOG2022|consen 583 DPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLK--PEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAF 660 (982)
T ss_pred chHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhcc--HHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 9999999999988886543 3578888888888777662 31 1 278888877731 11222 3
Q ss_pred HHHHHHHHHHHHhhcCC-----------------CcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC-cCcC-C
Q 007670 138 QVGAALCLAATIDAAQD-----------------PDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AVDG-S 198 (594)
Q Consensus 138 Q~~Aa~ALaavvE~l~~-----------------~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~-~~~~-p 198 (594)
|..+..+|..-..+-.+ +++..+.++|+-+-+.+..- ---..+++++.++...| .... +
T Consensus 661 ~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~--~~~s~vve~~C~i~~~~v~~~~~s 738 (982)
T KOG2022|consen 661 QLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMW--LGLSDVVEASCIIMVKGVRSLLTS 738 (982)
T ss_pred HHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHhcccccccc
Confidence 44555555544333211 22345566777666666411 01234666666666444 1112 3
Q ss_pred chHHHHHHHHhhhcCCcHHHHH-HHHHHHHHHH-HH-cC-C--------ccchhhhHHHHHHHhcchhH-----------
Q 007670 199 GLKGLVSCLLGFLSSQDWAARK-AAAEALWRLA-VV-EK-D--------AVPEFKGKCLKIFESKRFDK----------- 255 (594)
Q Consensus 199 yf~~lm~~L~e~L~seDw~lRK-aAaDaLg~IA-~a-~g-d--------~f~py~~~~m~sLEs~RfDK----------- 255 (594)
+....||.+..|+.. ...+- +++..+++.+ .+ .+ + .|....+..+.++|.--|-.
T Consensus 739 F~~p~l~~l~~Fi~r--~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~ 816 (982)
T KOG2022|consen 739 FPEPMLPSLCPFIVR--FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGF 816 (982)
T ss_pred chhhhHHHHHHHHHH--hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH
Confidence 214455555555433 22221 2233333333 22 22 2 23333455555666544433
Q ss_pred HHHHHhhcCCCCCC
Q 007670 256 MIEAWKQVPDLSEE 269 (594)
Q Consensus 256 ~i~lWk~i~~v~~~ 269 (594)
-=+.||.+|+..++
T Consensus 817 v~~ilkk~P~~~~~ 830 (982)
T KOG2022|consen 817 VRQILKKIPKFLEP 830 (982)
T ss_pred HHHHHHhCcCcccc
Confidence 44679999988654
No 132
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.65 E-value=29 Score=37.79 Aligned_cols=106 Identities=19% Similarity=0.147 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-
Q 007670 158 GKLGRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK- 234 (594)
Q Consensus 158 ~yL~~L~~RL~klL~s-~~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g- 234 (594)
.|...+++||.+++.. ..++.-+.+=+++-.+.+..... .+|+...+...+.|..+.|-.+|.+|..+...+..+..
T Consensus 228 ~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 228 KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4677899999999998 56554444444444444222122 39999999999999999999999999999999998754
Q ss_pred -Cccchh-----hhHHHHHHHhcchhH-HHHHHhhc
Q 007670 235 -DAVPEF-----KGKCLKIFESKRFDK-MIEAWKQV 263 (594)
Q Consensus 235 -d~f~py-----~~~~m~sLEs~RfDK-~i~lWk~i 263 (594)
+...+- ..+++..++..+-+| ..++|..+
T Consensus 308 ~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~l 343 (372)
T PF12231_consen 308 NELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYL 343 (372)
T ss_pred CccccHHHHHHHHHHHHHHhCccccccccHHHHHHH
Confidence 222222 244445566666665 44666553
No 133
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.45 E-value=13 Score=43.04 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=64.4
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcC
Q 007670 17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD 93 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD 93 (594)
++.-+-++|++-+-....+.|.-+ |..+|+++. .++..+|+.||+.|-.+|... ..|+++|.-++++.|+-
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcE----Ded~~iR~~aik~lp~~ck~~--~~~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCE----DEDVQIRKQAIKGLPQLCKDN--PEHVSKVADVLVQLLQT 107 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-----SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh----cccHHHHHHHHHhHHHHHHhH--HHHHhHHHHHHHHHHhc
Confidence 566689999999999999887433 666666665 467889999999999888764 34899999999999999
Q ss_pred CChhHHHHHHHHHHhhchhh
Q 007670 94 KNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 94 ~Ds~VR~Ac~~ALG~LAe~l 113 (594)
-|+..+.++-.+|-.|-..-
T Consensus 108 dd~~E~~~v~~sL~~ll~~d 127 (556)
T PF05918_consen 108 DDPVELDAVKNSLMSLLKQD 127 (556)
T ss_dssp --HHHHHHHHHHHHHHHHH-
T ss_pred ccHHHHHHHHHHHHHHHhcC
Confidence 99888888888885554433
No 134
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=90.41 E-value=13 Score=44.91 Aligned_cols=231 Identities=16% Similarity=0.113 Sum_probs=134.8
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCC--CcchHHHHHHHHHHHhhh-------c
Q 007670 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDK--PGVRKECIHVIATLSNSH-------N 75 (594)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~k--p~~RKaaI~lLGvlae~h-------~ 75 (594)
.|+.++.+|.-.-+.|+.--+.+|.-..-..+++. |-..|.+...+.. -+.|..++..|-...+.| +
T Consensus 2 ~~~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~~~----f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 2 VKQAIIELLSGSLSADQNVRSQAETQLKQLELTEG----FGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred cHHHHHHHHHhhcCCChhHHHHHHHHHhccccchH----HHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 57889999988877775555555543322222332 4444444433332 255777777676666666 5
Q ss_pred cccc-----hHH-HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHH
Q 007670 76 LSPY-----ITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATI 149 (594)
Q Consensus 76 isph-----Lpk-IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavv 149 (594)
..|. ..+ |-..+.+.|-|+++-+|.+...++..+|.+--=....-++.-++..| ...|.+.--+|..||+-+.
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l-~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLL-SSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHH-hccchhhhhhHHHHHHHHH
Confidence 5554 222 33355566779999999999999999998873222334666666666 4456666669999999988
Q ss_pred hhcCCC----cchhHHHHHHHHHHHhcCCchh--hHHHHHHHHHHHH---hc--------CcCc-CCchHHHHHHHHhhh
Q 007670 150 DAAQDP----DAGKLGRMEVRLERLLKSEVFK--AKAAGLVVVGSVI---GS--------GAVD-GSGLKGLVSCLLGFL 211 (594)
Q Consensus 150 E~l~~~----i~~yL~~L~~RL~klL~s~~fk--aK~alL~aIGSiA---~a--------~~~~-~pyf~~lm~~L~e~L 211 (594)
+.+... +.+....=|.|++++....+.. ++.+-+-...+++ .. .+.| .+.+.+.|..+...+
T Consensus 157 ~ev~~ee~~~~~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l 236 (1005)
T KOG2274|consen 157 DEVDVEEMFFVGPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPL 236 (1005)
T ss_pred HHHHHHHHhcccccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 776322 2233233455677777655443 3333223333322 11 1222 255555555555555
Q ss_pred cC---CcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670 212 SS---QDWAARKAAAEALWRLAVVEKDAVPEF 240 (594)
Q Consensus 212 ~s---eDw~lRKaAaDaLg~IA~a~gd~f~py 240 (594)
.- .+|.+|..-+-++..+..-......||
T Consensus 237 ~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~~ 268 (1005)
T KOG2274|consen 237 QRNDGSDFSLRMEILKCLTQLVENFPSLINPF 268 (1005)
T ss_pred cccccchHHHHHHHHHHHHHHHHhhHHhhhHH
Confidence 42 579998887777776654433333333
No 135
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=90.33 E-value=0.92 Score=45.09 Aligned_cols=89 Identities=19% Similarity=0.101 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH---HHHc
Q 007670 158 GKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL---AVVE 233 (594)
Q Consensus 158 ~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I---A~a~ 233 (594)
+||+...+=|.+. ++| .|-|.......+-. .++.-..|.+++++..|...|.+.|-++..+++.+|..| ...+
T Consensus 38 ~~Lpif~dGL~Et-~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 38 HYLPIFFDGLRET-EHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred hHHHHHHhhhhcc-CccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 4555544444333 234 66677776666654 222224699999999999999999999999999999999 5568
Q ss_pred CCccchhhhHHHHHHH
Q 007670 234 KDAVPEFKGKCLKIFE 249 (594)
Q Consensus 234 gd~f~py~~~~m~sLE 249 (594)
|+.+-||...++-+|+
T Consensus 115 G~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 115 GEALVPYYRQLLPVLN 130 (183)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 8999999988887776
No 136
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.31 E-value=6 Score=46.59 Aligned_cols=194 Identities=19% Similarity=0.192 Sum_probs=119.3
Q ss_pred HHHHHhhc---CCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHH
Q 007670 29 LDSIAATV---DPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQAT 101 (594)
Q Consensus 29 LD~LA~~L---ppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~A 101 (594)
|-.+...| |++. +..++..|.-...+.+-.+|.-+..+|+++...- +=-.-..++.-.+..||.|-.+.||--
T Consensus 66 la~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiq 145 (892)
T KOG2025|consen 66 LARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQ 145 (892)
T ss_pred HHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 33444444 4444 7888888888888888899999999999997744 223346788888999999999999999
Q ss_pred HHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHH-------HHHhhcCCCcch----hHHHHHHH----
Q 007670 102 CISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLA-------ATIDAAQDPDAG----KLGRMEVR---- 166 (594)
Q Consensus 102 c~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALa-------avvE~l~~~i~~----yL~~L~~R---- 166 (594)
|+.+|..|=+.-.++.. -+..-+.+.+.+++++.|-.+|..|+. .++|.+.|.... ....++|+
T Consensus 146 Av~aLsrlQ~d~~dee~-~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r 224 (892)
T KOG2025|consen 146 AVLALSRLQGDPKDEEC-PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLR 224 (892)
T ss_pred HHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhh
Confidence 99999998753322211 134444444446788888888888775 344444333210 11223332
Q ss_pred ----------HHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHH
Q 007670 167 ----------LERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRL 229 (594)
Q Consensus 167 ----------L~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-seDw~lRKaAaDaLg~I 229 (594)
|-.-|+...+-+|.|+..+|.+ +. .-+.+.=+.-+.+.|. +..-.++--|+++|-.+
T Consensus 225 ~lsi~krv~LlewgLnDRe~sVk~A~~d~il~-----~W-l~~~dgni~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 225 SLSIDKRVLLLEWGLNDREFSVKGALVDAILS-----GW-LRFSDGNILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH-----HH-hhhccccHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 2333456677778777776664 01 0111111222233332 33346666778887774
No 137
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.29 E-value=16 Score=44.98 Aligned_cols=96 Identities=13% Similarity=0.234 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhhchhhhcc---hhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhc
Q 007670 98 LQATCISTVSSLSPRVGAS---AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLK 172 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~---~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~ 172 (594)
=|..|++.|+.+....... ++.. ++.-.++.|-.++.+=.-.=.|.||-++-|+-+..- ...=..--++|..+|.
T Consensus 573 qrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls 652 (1387)
T KOG1517|consen 573 QRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS 652 (1387)
T ss_pred HHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc
Confidence 4667777777777665321 1111 555555555322345555678888888888644331 1111224467999999
Q ss_pred CCchhhHHHHHHHHHHHHhcC
Q 007670 173 SEVFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 173 s~~fkaK~alL~aIGSiA~a~ 193 (594)
.+...+++|++=|+|++...+
T Consensus 653 D~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 653 DPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred CccHHHHHHHHHHHHHHhccc
Confidence 999999999999999998754
No 138
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.26 E-value=6.4 Score=46.88 Aligned_cols=208 Identities=17% Similarity=0.101 Sum_probs=136.5
Q ss_pred cchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhh-----cCCChh-HHHHHHHHHHhhchhhhc----------c--h
Q 007670 58 GVRKECIHVIATLSNSH--NLSPYITKIINSITRNF-----RDKNSA-LQATCISTVSSLSPRVGA----------S--A 117 (594)
Q Consensus 58 ~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrL-----kD~Ds~-VR~Ac~~ALG~LAe~l~~----------~--~ 117 (594)
..|--+=.++=.+-..| .+.|.+-+|+-...... +|-+.. ..+|...|+|.-+.++.+ . |
T Consensus 412 ~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~Wl~~~llp 491 (978)
T KOG1993|consen 412 NLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDKWLQEALLP 491 (978)
T ss_pred ccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhCH
Confidence 34666666666676666 77777777775555554 343343 466777777765555432 0 0
Q ss_pred ---------------------------hHHhHHHHH-HHH---ccCC-ChhHHHHHHHHHHHHHhhc---CCCcchhHHH
Q 007670 118 ---------------------------FVTMLKLLS-DAL---FTEQ-DTNAQVGAALCLAATIDAA---QDPDAGKLGR 162 (594)
Q Consensus 118 ---------------------------~~~~lkPL~-eaL---~~eq-~k~vQ~~Aa~ALaavvE~l---~~~i~~yL~~ 162 (594)
...=++|++ +++ +.++ |..|-.+++.+|-.+||-. ++...||++.
T Consensus 492 El~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~len 571 (978)
T KOG1993|consen 492 ELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLEN 571 (978)
T ss_pred HhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHH
Confidence 001133332 222 2455 8889999999999999975 3555889999
Q ss_pred HHHHHHHHhcCC-chhhHHHHHHHHHHHHh-cCcCcCCchHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHHHHcC---C
Q 007670 163 MEVRLERLLKSE-VFKAKAAGLVVVGSVIG-SGAVDGSGLKGLVSCLLGFLS--SQDWAARKAAAEALWRLAVVEK---D 235 (594)
Q Consensus 163 L~~RL~klL~s~-~fkaK~alL~aIGSiA~-a~~~~~pyf~~lm~~L~e~L~--seDw~lRKaAaDaLg~IA~a~g---d 235 (594)
+-.-++++|..- .+.+|..+|+.++.++. ++.-..||...+++.|...+. .++--+|-+-+-+|--+..+.| .
T Consensus 572 lf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~ 651 (978)
T KOG1993|consen 572 LFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSF 651 (978)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCc
Confidence 888888888655 77899999999999884 443334888777777766654 3456678888888888888888 3
Q ss_pred ccchhhhHHHH-HHHhcchhH------HHHHHhhcCC
Q 007670 236 AVPEFKGKCLK-IFESKRFDK------MIEAWKQVPD 265 (594)
Q Consensus 236 ~f~py~~~~m~-sLEs~RfDK------~i~lWk~i~~ 265 (594)
.+-||.=++++ +-.=..-++ ++++|..+=.
T Consensus 652 ~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~ 688 (978)
T KOG1993|consen 652 EFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLM 688 (978)
T ss_pred cchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHh
Confidence 66666555553 222112222 9999987543
No 139
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.22 E-value=13 Score=41.07 Aligned_cols=143 Identities=15% Similarity=0.179 Sum_probs=82.8
Q ss_pred hHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc
Q 007670 121 MLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (594)
Q Consensus 121 ~lkPL~eaL~~---eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~ 196 (594)
+..+++..|+. -.+..-|..-..=|..+++.+++.. ..+...|+.++.+++++++|++-..++.....-.-. +..
T Consensus 252 l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~-~li 330 (409)
T PF01603_consen 252 LAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL-SLI 330 (409)
T ss_dssp GHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH-HHH
T ss_pred hHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH-HHH
Confidence 45555555542 2344445555555666666655433 567788999999999999999866655432211000 011
Q ss_pred CCchHHHHHHHHhhhcC---CcH--HHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcch---hHHHHHHhhcCC
Q 007670 197 GSGLKGLVSCLLGFLSS---QDW--AARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRF---DKMIEAWKQVPD 265 (594)
Q Consensus 197 ~pyf~~lm~~L~e~L~s---eDw--~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~Rf---DK~i~lWk~i~~ 265 (594)
..+-..++|.|.+.|.. .-| .+|+.|..+|..+..+-.+.|...... ++..+..+- .+--+-|+.|..
T Consensus 331 ~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~-~~~~~~~~~~~~~~r~~~W~~i~~ 406 (409)
T PF01603_consen 331 SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQK-YKEKEQKEKAREKKRKKKWKKIEE 406 (409)
T ss_dssp HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHH-HHHHHHHHHHSSHHHHHHHTT-S-
T ss_pred HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25556677777777653 344 579999999999988766666542222 222222222 127888998874
No 140
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.13 E-value=14 Score=43.70 Aligned_cols=177 Identities=19% Similarity=0.220 Sum_probs=120.1
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH-HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK-IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk-IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~ 119 (594)
||.++.|.. ..+-..+|=+.+-+..-+.++ |.+.. -++++++-..|+++.+|.-|..++|++--.-+ ..
T Consensus 51 F~dvvk~~~----T~dlelKKlvyLYl~nYa~~~---P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i---~e 120 (734)
T KOG1061|consen 51 FPDVVKCMQ----TRDLELKKLVYLYLMNYAKGK---PDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKI---TE 120 (734)
T ss_pred hHHHHhhcc----cCCchHHHHHHHHHHHhhccC---chHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHH---HH
Confidence 555555554 456788998888888777776 22222 36789999999999999998888887643321 11
Q ss_pred HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cC-
Q 007670 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DG- 197 (594)
Q Consensus 120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~- 197 (594)
-++.||...+ .+.++.++..|+.|.+++-.--.+ ...-..+++-|-.++...+..+-+.++.++..|...... ..
T Consensus 121 y~~~Pl~~~l-~d~~~yvRktaa~~vakl~~~~~~--~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 121 YLCDPLLKCL-KDDDPYVRKTAAVCVAKLFDIDPD--LVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHHhc-cCCChhHHHHHHHHHHHhhcCChh--hccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 2889999999 788999999999999998763222 222234677777888777777877778888777744321 21
Q ss_pred CchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHcC
Q 007670 198 SGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 198 pyf~~lm~~L~e~L~-seDw~lRKaAaDaLg~IA~a~g 234 (594)
-.-..++..+.+.|. .++|. -+..|..++....
T Consensus 198 ~l~~~~~~~lL~al~ec~EW~----qi~IL~~l~~y~p 231 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECTEWG----QIFILDCLAEYVP 231 (734)
T ss_pred cccHHHHHHHHHHHHHhhhhh----HHHHHHHHHhcCC
Confidence 111234444444444 47898 4777777777654
No 141
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=1.2 Score=52.38 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=47.4
Q ss_pred CCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcC-CChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCC
Q 007670 55 DKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ 133 (594)
Q Consensus 55 ~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq 133 (594)
.+--+||+|+.+||.++-- =|.-+|.++..|.+ -++.||-.++.|||..|.-......+.+|.||+. +.
T Consensus 567 ~nDDVrRaAVialGFVl~~------dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~----D~ 636 (929)
T KOG2062|consen 567 VNDDVRRAAVIALGFVLFR------DPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTS----DP 636 (929)
T ss_pred cchHHHHHHHHHheeeEec------ChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhc----Ch
Confidence 4445777777777765311 12334445555554 3466777777777777766643333335555443 44
Q ss_pred ChhHHHHHHHHHHHH
Q 007670 134 DTNAQVGAALCLAAT 148 (594)
Q Consensus 134 ~k~vQ~~Aa~ALaav 148 (594)
.--|-.||+.|++-+
T Consensus 637 ~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 637 VDFVRQGALIALAMI 651 (929)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666677776665
No 142
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=89.84 E-value=7.3 Score=38.27 Aligned_cols=135 Identities=14% Similarity=0.164 Sum_probs=90.0
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
+..|+..|.+..-+++..+|..|+.+++.+.+..++.| ...+|+++-...||++.||+.|...+..+.+... .+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~--s~-- 79 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE--SL-- 79 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH--HH--
Confidence 56677888777778899999999999999999888855 5689999999999999999999998888888772 11
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
+-..+.+. ++ .|+.+..-+...... ........+.++..+++ ++-+-+...+..|-.....
T Consensus 80 v~~~~~~g--------i~--~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~ 141 (187)
T PF12830_consen 80 VESRYSEG--------IR--LAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDF 141 (187)
T ss_pred HHHHHHHH--------HH--HHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHh
Confidence 11112222 22 344444443322111 01124556777888887 3334555666666655533
No 143
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=89.61 E-value=22 Score=37.73 Aligned_cols=201 Identities=15% Similarity=0.138 Sum_probs=114.1
Q ss_pred HHHHHHhhcCCChhHHHHHH-HHHHHHHhhc---CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHh-----hh--c
Q 007670 7 TSVNGLLNKLSDRDTYSQAA-KELDSIAATV---DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSN-----SH--N 75 (594)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~-~eLD~LA~~L---ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae-----~h--~ 75 (594)
.++++.|..+-.+|+...|+ .+++.|..++ ..+--..++..+..-+.+-+++.||.-++++|.+.. .. +
T Consensus 21 ~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~ 100 (339)
T PF12074_consen 21 SKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKF 100 (339)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHH
Confidence 34444444444444333332 3344455554 232355666777777888889999999999999874 22 8
Q ss_pred cccchHHHHHHHHhhhcCCChhHHH---HHHHHHHhhchhhhcc--------------hhHH-hHHHHHHHHccC-CChh
Q 007670 76 LSPYITKIINSITRNFRDKNSALQA---TCISTVSSLSPRVGAS--------------AFVT-MLKLLSDALFTE-QDTN 136 (594)
Q Consensus 76 isphLpkIL~~IvrrLkD~Ds~VR~---Ac~~ALG~LAe~l~~~--------------~~~~-~lkPL~eaL~~e-q~k~ 136 (594)
+.+.+|.++.++.+...-|-+.... .|+.++-.+.....+. +... ++.|=+ ... .+..
T Consensus 101 ~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kv---yskl~~~~ 177 (339)
T PF12074_consen 101 AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKV---YSKLASEE 177 (339)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHH---HhccCCHh
Confidence 8888889998888888877655321 1111111111111110 0011 111111 112 2344
Q ss_pred HHHHHHHHHHHHHhhcCCCcchh-HHHHHHHHHHHhcCC--chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc
Q 007670 137 AQVGAALCLAATIDAAQDPDAGK-LGRMEVRLERLLKSE--VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS 212 (594)
Q Consensus 137 vQ~~Aa~ALaavvE~l~~~i~~y-L~~L~~RL~klL~s~--~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~ 212 (594)
...-.+.+|.+++....+...+- ...+..-++-++-++ +.+++..++.++..+....... .-..++..+..+|.
T Consensus 178 d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~--l~~~li~~l~~~l~ 254 (339)
T PF12074_consen 178 DLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL--LSKSLISGLWKWLS 254 (339)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH--HHHHHHHHHHHHHH
Confidence 44566777777776655443222 234455577777777 8899999999999877554332 33445666666664
No 144
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.59 E-value=14 Score=47.00 Aligned_cols=212 Identities=12% Similarity=0.065 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-------CCCCcchHHHHHHHHH---HHhhh--ccccchHHHHHHHH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS-------SDKPGVRKECIHVIAT---LSNSH--NLSPYITKIINSIT 88 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s-------s~kp~~RKaaI~lLGv---lae~h--~isphLpkIL~~Iv 88 (594)
+.++.....-.++..|.-..|.|++.-+.+-.. ..++.-| .+..|+. +++.+ ++.||-..++-.++
T Consensus 1365 ~E~sV~~~~v~~v~klse~~FRplf~~l~~WA~~~~~~~a~~~~~~R--li~fy~f~~~l~esl~si~~pYf~~~l~~~~ 1442 (1621)
T KOG1837|consen 1365 LERSVQNKAVAKVLKLSESTFRPLFSPLFDWAEPGLEAKAEQKCLER--LISFYHFADYLQESLKSIVTPYFGYLLEPRV 1442 (1621)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcccCCccccchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 677777777888888887777666666654432 2222333 3333333 37777 78888777766555
Q ss_pred hhhcCCC------------hhHHHHHHHHHHhhchhhhcc--------------hhHHhHHHHHHHHccC-C----ChhH
Q 007670 89 RNFRDKN------------SALQATCISTVSSLSPRVGAS--------------AFVTMLKLLSDALFTE-Q----DTNA 137 (594)
Q Consensus 89 rrLkD~D------------s~VR~Ac~~ALG~LAe~l~~~--------------~~~~~lkPL~eaL~~e-q----~k~v 137 (594)
-.|+--+ ...| -+..+|+|.-.+... .+..+..|+...|... . ...|
T Consensus 1443 ~~L~k~n~s~~~~~~~~~~~~~r--~~~~~~~Lvl~cl~~~~~~Dt~~~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v 1520 (1621)
T KOG1837|consen 1443 ILLKKINASKHRWFWLLPVNQSR--KPLLLGTLVLNCLKDLFLFDTIESFVTKSRFELLSYPLVSQLVNVLLEFYASDIV 1520 (1621)
T ss_pred HHHHHhhhhhhhhhhhhcccccc--hhHHHHHHHHHHHHHHHhhhhhHHHHhhhhhhhhhhhhHHHHHHhhccchhhhHH
Confidence 4444333 2334 344555555555422 1223677888887531 1 2223
Q ss_pred HHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcH
Q 007670 138 QVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDW 216 (594)
Q Consensus 138 Q~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw 216 (594)
-...+.|++.+--..++. +++|..++++...+.+.+++-++|-.+--++.--|++ .+.+++++|.|.+.+.++|-
T Consensus 1521 ~~~li~~i~~~~~a~~~d----~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~ 1596 (1621)
T KOG1837|consen 1521 SKLLIAEIASDSVADKDD----LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDD 1596 (1621)
T ss_pred HHHHHHHHHhhccCChhh----hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHH
Confidence 333344444433322332 7888888888888889899988888888777767776 48899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCccchh
Q 007670 217 AARKAAAEALWRLAVVEKDAVPEF 240 (594)
Q Consensus 217 ~lRKaAaDaLg~IA~a~gd~f~py 240 (594)
++--.+.+.+-.+=...|+.|..|
T Consensus 1597 ~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1597 EVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred HHHHHHHHHHHHHHHHhchhhhhc
Confidence 988888887777777889977766
No 145
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=89.58 E-value=5.7 Score=41.47 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=96.5
Q ss_pred ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch---hH------H---hHHHHHHHHc----cCCChhHH
Q 007670 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FV------T---MLKLLSDALF----TEQDTNAQ 138 (594)
Q Consensus 75 ~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~---~~------~---~lkPL~eaL~----~eq~k~vQ 138 (594)
.+..|++-++|.|...+-|.++.+|--.|..|..|...+.... +. + .+.|++-.|= .++...+-
T Consensus 112 ~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 112 WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELL 191 (282)
T ss_pred hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHH
Confidence 8889999999999999999999999999999999998774322 11 1 2333333221 13345555
Q ss_pred HHHHHHHHHHHhhcCCCc----chhHHHHHHH-HHHHhcCC----chhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHH
Q 007670 139 VGAALCLAATIDAAQDPD----AGKLGRMEVR-LERLLKSE----VFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLL 208 (594)
Q Consensus 139 ~~Aa~ALaavvE~l~~~i----~~yL~~L~~R-L~klL~s~----~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~ 208 (594)
..|.-||-.++....... ...+.+++.. ++.-+.+. .......++..+..++..-|.. .-|+..+++.|.
T Consensus 192 ~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 192 QAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 677778877766542221 2234443333 55555444 3566778888888888776665 499999999999
Q ss_pred hhhcCCc
Q 007670 209 GFLSSQD 215 (594)
Q Consensus 209 e~L~seD 215 (594)
++|.+.+
T Consensus 272 ~~l~npf 278 (282)
T PF10521_consen 272 QILENPF 278 (282)
T ss_pred HHhcCCC
Confidence 9988754
No 146
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=89.25 E-value=1.6 Score=39.63 Aligned_cols=114 Identities=20% Similarity=0.292 Sum_probs=75.2
Q ss_pred HHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------------------ccccchHHHHHHHHh
Q 007670 28 ELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------------------NLSPYITKIINSITR 89 (594)
Q Consensus 28 eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------------------~isphLpkIL~~Ivr 89 (594)
.|-.|+..-=|+.-|-|+..+.+...+ .+......+..|..+.++. .+..+++.|+.++.+
T Consensus 11 ~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~ 89 (148)
T PF08389_consen 11 VLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQ 89 (148)
T ss_dssp HHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455554455556566666555443 3667777888888875555 245567888888888
Q ss_pred hhcCCC----hhHHHHHHHHHHhhchhhhcchhH-H-hHHHHHHHHccCCChhHHHHHHHHH
Q 007670 90 NFRDKN----SALQATCISTVSSLSPRVGASAFV-T-MLKLLSDALFTEQDTNAQVGAALCL 145 (594)
Q Consensus 90 rLkD~D----s~VR~Ac~~ALG~LAe~l~~~~~~-~-~lkPL~eaL~~eq~k~vQ~~Aa~AL 145 (594)
.|.... ..+..++..+++.+..|+.-.-.. . ++.-++..| +++..+..|+-||
T Consensus 90 ~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l---~~~~~~~~A~~cl 148 (148)
T PF08389_consen 90 ILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLL---QSPELREAAAECL 148 (148)
T ss_dssp HHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHT---TSCCCHHHHHHHH
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHc---CCHHHHHHHHHhC
Confidence 888766 567888888888888877311111 1 677777766 4666688888886
No 147
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=89.10 E-value=0.57 Score=34.52 Aligned_cols=29 Identities=10% Similarity=0.202 Sum_probs=26.2
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670 83 IINSITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
.+|.+++.|++++..|+..|++||+.|+.
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999998874
No 148
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=88.94 E-value=13 Score=44.69 Aligned_cols=137 Identities=12% Similarity=0.178 Sum_probs=105.7
Q ss_pred CCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC
Q 007670 55 DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE 132 (594)
Q Consensus 55 ~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e 132 (594)
.+-.+-.-+...|+.+|-.- ...+|...++|.|..+++|--+.||++.+.++=.++.-. +...+.+-++++| .+
T Consensus 307 aN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~---~l~~~~~~I~e~l-k~ 382 (815)
T KOG1820|consen 307 ANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNST---PLSKMSEAILEAL-KG 382 (815)
T ss_pred cchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc---cHHHHHHHHHHHh-cC
Confidence 34445556666667776666 777899999999999999999999999988887777622 3333666666666 66
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCcc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670 133 QDTNAQVGAALCLAATIDAAQDPDA--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 133 q~k~vQ~~Aa~ALaavvE~l~~~i~--~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~ 195 (594)
.++.+-..-...|++.+...++... +-+..+++-+++..+...-.++.+++.+++.+..+-|+
T Consensus 383 knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 383 KNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred CChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 7777767777889999999886543 45788999999999888888999999999998866443
No 149
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=5.4 Score=47.11 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=102.1
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
.-+++..+. .+.+|..|..++..++..=-|---..-+.++|++ .++|++--||+||+.|+|-++-.-.++ ...
T Consensus 520 Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~---aVsD~nDDVrRaAVialGFVl~~dp~~-~~s 592 (929)
T KOG2062|consen 520 ADPLIKELL---RDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHV---AVSDVNDDVRRAAVIALGFVLFRDPEQ-LPS 592 (929)
T ss_pred hHHHHHHHh---cCCchhhhhhhHHHHHHHHhccCchhhHHHhhcc---cccccchHHHHHHHHHheeeEecChhh-chH
Confidence 566555554 4568999999999888762222111223344443 357999999999999999876444211 113
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG 199 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py 199 (594)
++.+|.+. -|++|--|||+||--+|-+.+... ...|.. |.+ +..+|--+.|+|+.-=-+.+.....-|-
T Consensus 593 ~V~lLses----~N~HVRyGaA~ALGIaCAGtG~~eAi~lLep----l~~--D~~~fVRQgAlIa~amIm~Q~t~~~~pk 662 (929)
T KOG2062|consen 593 TVSLLSES----YNPHVRYGAAMALGIACAGTGLKEAINLLEP----LTS--DPVDFVRQGALIALAMIMIQQTEQLCPK 662 (929)
T ss_pred HHHHHhhh----cChhhhhhHHHHHhhhhcCCCcHHHHHHHhh----hhc--ChHHHHHHHHHHHHHHHHHhcccccCch
Confidence 55555544 499999999999998888765432 223333 333 3344444555555444445555454444
Q ss_pred hHHHHHHHHhhhc--CCcHHHHHHHHHHHHHH
Q 007670 200 LKGLVSCLLGFLS--SQDWAARKAAAEALWRL 229 (594)
Q Consensus 200 f~~lm~~L~e~L~--seDw~lRKaAaDaLg~I 229 (594)
...+...+...+. .+|-.+.-.|+-+=|-+
T Consensus 663 v~~frk~l~kvI~dKhEd~~aK~GAilAqGil 694 (929)
T KOG2062|consen 663 VNGFRKQLEKVINDKHEDGMAKFGAILAQGIL 694 (929)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhh
Confidence 4555555555544 35655555566665555
No 150
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=88.76 E-value=4.1 Score=36.88 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=57.0
Q ss_pred cchHHHHHHHHhhhc-CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhH-HHHHHHHHHHHHhhc
Q 007670 78 PYITKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNA-QVGAALCLAATIDAA 152 (594)
Q Consensus 78 phLpkIL~~IvrrLk-D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~v-Q~~Aa~ALaavvE~l 152 (594)
.+++.|+|++.++|+ -..+-.|-||.--+++|+.... =...++..|++++........ +..+..||..+++.=
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 378999999999999 6777899999999999999882 122378888888875433332 477899999999764
No 151
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.67 E-value=13 Score=44.34 Aligned_cols=198 Identities=15% Similarity=0.199 Sum_probs=99.9
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~ 118 (594)
+.+|+..|.....+-.-.+=-++-+++-.+.... .++| -++++.-.+.-|.+.+|-|+..+|-.+|...+ ..
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P--~~ 316 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP--QA 316 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC--cc
Confidence 4455555544443322233334444444432222 4445 66777777888999999999999999998773 23
Q ss_pred HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHhcCcCc
Q 007670 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK--SEVFKAKAAGLVVVGSVIGSGAVD 196 (594)
Q Consensus 119 ~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~--s~~fkaK~alL~aIGSiA~a~~~~ 196 (594)
+..+.+=++.|..+.++.+. -+|+..+.-.-.+ .-.-.||..+..... ++.|| ..++.+|.|+-. -|
T Consensus 317 v~~cN~elE~lItd~NrsIa---t~AITtLLKTG~e---~sv~rLm~qI~~fv~disDeFK--ivvvdai~sLc~---~f 385 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIA---TLAITTLLKTGTE---SSVDRLMKQISSFVSDISDEFK--IVVVDAIRSLCL---KF 385 (865)
T ss_pred ccccchhHHhhhcccccchh---HHHHHHHHHhcch---hHHHHHHHHHHHHHHhccccce--EEeHHHHHHHHh---hc
Confidence 34566666666666666543 3444444332221 122333333333332 22333 234445554331 11
Q ss_pred CCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH
Q 007670 197 GSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK 255 (594)
Q Consensus 197 ~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK 255 (594)
+.--..+|..|...|.+ ..+.-.++..|++..++....+.=.+-...++.-+|.|-|.+
T Consensus 386 p~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~ 445 (865)
T KOG1078|consen 386 PRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQ 445 (865)
T ss_pred cHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchH
Confidence 10011233334443333 235555566666666665544433334455556666666666
No 152
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.65 E-value=7.4 Score=44.39 Aligned_cols=206 Identities=19% Similarity=0.158 Sum_probs=107.0
Q ss_pred HHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHH
Q 007670 26 AKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIST 105 (594)
Q Consensus 26 ~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~A 105 (594)
+-.|-.+.+.|+-++|..+...+.... .+...|+--+-+|+.+.....+ .+|...|...+..--. +...
T Consensus 349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av--------~~i~~~I~~~~~~~~e-a~~~ 417 (618)
T PF01347_consen 349 FSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAV--------KFIKDLIKSKKLTDDE-AAQL 417 (618)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHH--------HHHHHHHHTT-S-HHH-HHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHH--------HHHHHHHHcCCCCHHH-HHHH
Confidence 555666666666666666666554322 3455666666666665333211 1222233222221111 2233
Q ss_pred HHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhc-CC------------Cc-chhHHHHHHHHH
Q 007670 106 VSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAA-QD------------PD-AGKLGRMEVRLE 168 (594)
Q Consensus 106 LG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l-~~------------~i-~~yL~~L~~RL~ 168 (594)
+..|...... |...+++=+++.+. ..+++.+..+|.+++..++-.. .. .+ ..|.+.|...|.
T Consensus 418 l~~l~~~~~~-Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 496 (618)
T PF01347_consen 418 LASLPFHVRR-PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELK 496 (618)
T ss_dssp HHHHHHT------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHH
T ss_pred HHHHHhhcCC-CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHH
Confidence 4444444422 22223443333331 2345667778888888887663 11 11 246666666666
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (594)
Q Consensus 169 klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~se---Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m 245 (594)
......+...+...|-|||-+ | .+.+++.|..++... .-.+|.+|+.+|..++....+.+.+ -++
T Consensus 497 ~~~~~~~~~~~~~~LkaLgN~---g------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~---~l~ 564 (618)
T PF01347_consen 497 EAVSRGDEEEKIVYLKALGNL---G------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVRE---ILL 564 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH---T-------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHH---HHH
T ss_pred HHhhccCHHHHHHHHHHhhcc---C------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHH---HHH
Confidence 777777778888888888843 3 245778888888766 6888999999999885544333332 233
Q ss_pred HHHHhcchhH
Q 007670 246 KIFESKRFDK 255 (594)
Q Consensus 246 ~sLEs~RfDK 255 (594)
.++.+..-|-
T Consensus 565 ~I~~n~~e~~ 574 (618)
T PF01347_consen 565 PIFMNTTEDP 574 (618)
T ss_dssp HHHH-TTS-H
T ss_pred HHhcCCCCCh
Confidence 5555554444
No 153
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.51 E-value=2.7 Score=45.09 Aligned_cols=141 Identities=13% Similarity=0.213 Sum_probs=101.7
Q ss_pred HHHHHhhcCCChhHHH--HHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccc
Q 007670 8 SVNGLLNKLSDRDTYS--QAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPY 79 (594)
Q Consensus 8 rvl~~L~KLsDrDT~r--~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isph 79 (594)
-+.+.|.+|++.|... -++..|..++.-=+ +. +-..+-.+.....++.+.+=|++++.++.+.+.+ .+...
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999888433 35555555544322 33 2233334456678888999999999999998888 55457
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (594)
Q Consensus 80 LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~ 153 (594)
|...+-.+..+-.+..--||+++-+||-.+..+. .|.. +++=|+-.+ .+.++.+-..+|.|+-..+..++
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v--tp~~-~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV--TPQK-LLRKLIPIL-QHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc--ChHH-HHHHHHHHH-hhhchhhhhhhhccccccceecc
Confidence 7777777777777777789999999999999988 3322 455555555 56788899999999999998876
No 154
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.97 E-value=3.1 Score=47.85 Aligned_cols=112 Identities=10% Similarity=0.185 Sum_probs=81.2
Q ss_pred CCCCCCcchHHHHHHHHHHH-hhhccccchHHHHHHHHhhhcC-CChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670 52 NSSDKPGVRKECIHVIATLS-NSHNLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (594)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvla-e~h~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL 129 (594)
.+..+--+||+|+-+||.+| ... ..++-++..|.| .+..||-+.+.|||..|....++ ....++++|
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D~-------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L 629 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDDR-------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEAL 629 (926)
T ss_pred cccCchHHHHHHHHheeeeEecCc-------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHH
Confidence 33445579999999999874 332 234555666666 45789999999999998877433 334455566
Q ss_pred ccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC
Q 007670 130 FTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (594)
Q Consensus 130 ~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~ 174 (594)
+.+.+--|..+|+.|+.-+.=-..++..|.+..+...+..++...
T Consensus 630 ~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~K 674 (926)
T COG5116 630 MYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDK 674 (926)
T ss_pred hhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhh
Confidence 555666688899999988877777777788888888888888655
No 155
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=87.92 E-value=29 Score=36.80 Aligned_cols=63 Identities=19% Similarity=0.413 Sum_probs=47.2
Q ss_pred CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 007670 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLS 110 (594)
Q Consensus 38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LA 110 (594)
.+.+|++..-+.+ .++.|.+|-++--+||.+. -+.+++++.|-.+||-..||..|..|+.++-
T Consensus 66 ~~Av~~l~~vl~d--esq~pmvRhEAaealga~~--------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 66 EDAVPVLVEVLLD--ESQEPMVRHEAAEALGAIG--------DPESLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred chhhHHHHHHhcc--cccchHHHHHHHHHHHhhc--------chhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 3337777777774 5678899999999998764 2344555556668999999999999988874
No 156
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.66 E-value=11 Score=44.23 Aligned_cols=54 Identities=13% Similarity=0.009 Sum_probs=38.9
Q ss_pred cchHHHHHHHHHHHhhhccccchHHHHHH-HHhhhcCCChhHHHHHHHHHHhhch
Q 007670 58 GVRKECIHVIATLSNSHNLSPYITKIINS-ITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 58 ~~RKaaI~lLGvlae~h~isphLpkIL~~-IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
..|-.++...+.++..-.=.+|-++-+.- +..-..|.|+.||.+|+++|=+|++
T Consensus 173 ~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e 227 (823)
T KOG2259|consen 173 GNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE 227 (823)
T ss_pred cchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc
Confidence 45556666666665544223555555554 8888999999999999999988888
No 157
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=87.62 E-value=4.5 Score=40.51 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC--c--------------
Q 007670 133 QDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV--D-------------- 196 (594)
Q Consensus 133 q~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~--~-------------- 196 (594)
+-..+-.-....+.++++.++..-.+++..++..|.++-++++|..|..+=.+||+++.+-|- +
T Consensus 12 ~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~ 91 (198)
T PF08161_consen 12 RYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDS 91 (198)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcC
Confidence 344455567778888888888777789999999999999999999999999999998866221 1
Q ss_pred CCchHHHHHHHHhhhcCCc
Q 007670 197 GSGLKGLVSCLLGFLSSQD 215 (594)
Q Consensus 197 ~pyf~~lm~~L~e~L~seD 215 (594)
.+-=.+++|.|.+++....
T Consensus 92 ~~~raWLLPlLr~~i~~~~ 110 (198)
T PF08161_consen 92 QPGRAWLLPLLRDHIRNAS 110 (198)
T ss_pred CcccchhHHHHHHhccCCC
Confidence 1222357888888876543
No 158
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=87.19 E-value=22 Score=38.95 Aligned_cols=176 Identities=13% Similarity=0.177 Sum_probs=103.5
Q ss_pred CCcchHH---HHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH------HhHHH
Q 007670 56 KPGVRKE---CIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV------TMLKL 124 (594)
Q Consensus 56 kp~~RKa---aI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~------~~lkP 124 (594)
+-.+|.- |+.+|..|-..-.=+-..|.++|.+.++|.-+|.+|.--+|..+|++-+.+... ..+ -+++.
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 3457777 666666663222222235677899999999999999999999999999988522 111 17888
Q ss_pred HHHHHccCCChhHHHHHHHHHHHHH---hhc----CCCcc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670 125 LSDALFTEQDTNAQVGAALCLAATI---DAA----QDPDA--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 125 L~eaL~~eq~k~vQ~~Aa~ALaavv---E~l----~~~i~--~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~ 195 (594)
+++.+.++.+ .|..+|.-.|.++- .++ +.... -.+..|-.|- ++ -++--++++|--|.++..+
T Consensus 133 ildcIggedd-eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakc-----nd--iaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 133 ILDCIGGEDD-EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKC-----ND--IARVRVLELIIEIFSISPE 204 (524)
T ss_pred HHHHHcCCcH-HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhh-----hh--HHHHHHHHHHHHHHhcCHH
Confidence 9999965444 44444443332221 111 11100 0111111111 11 1344467777777766655
Q ss_pred cCCch--HHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHH-cCCccch
Q 007670 196 DGSGL--KGLVSCLLGFLSS-QDWAARKAAAEALWRLAVV-EKDAVPE 239 (594)
Q Consensus 196 ~~pyf--~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a-~gd~f~p 239 (594)
...|. ..++..|..-|.. +|--+|...+|....+|.. +|.-|-|
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgrefla 252 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLA 252 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcc
Confidence 43222 2355666655654 7888888899999999986 4644443
No 159
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=87.15 E-value=12 Score=47.79 Aligned_cols=208 Identities=19% Similarity=0.233 Sum_probs=113.4
Q ss_pred CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--c-cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh
Q 007670 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N-LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG 114 (594)
Q Consensus 38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~-isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~ 114 (594)
.+.|+.||+.......+.++.+|.-+..++-.+=..+ + ...-+..++.+|+.+ .++.| ++|++.|-.|+....
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv~~Lvthi~sg---~~~ev-~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVVGALVTHIGSG---NSQEV-DAALDVLCELAEKNP 505 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHcCC---cHHHH-HHHHHHHHHHHhccH
Confidence 4469999999988899999888888888887775544 2 112244455555443 44455 799999999987654
Q ss_pred c--chhHHhHHHHHHHHccCCChhHHHH-H--HHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670 115 A--SAFVTMLKLLSDALFTEQDTNAQVG-A--ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV 189 (594)
Q Consensus 115 ~--~~~~~~lkPL~eaL~~eq~k~vQ~~-A--a~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSi 189 (594)
+ .++..+++.+++.|- .=+ -.|+. . .+|.-++-+ .......-..|.--+-|.|.+++++.| .+|.||++
T Consensus 506 ~~l~~fa~~l~giLD~l~-~Ls-~~qiR~lf~il~~La~~~--~~~~s~i~del~ivIRKQLss~~~~~K--~~GIIGav 579 (1426)
T PF14631_consen 506 SELQPFATFLKGILDYLD-NLS-LQQIRKLFDILCTLAFSD--SSSSSSIQDELHIVIRKQLSSSNPKYK--RIGIIGAV 579 (1426)
T ss_dssp HHHHHTHHHHHGGGGGGG-G---HHHHHHHHHHHHHHHHHH--SS---HHHHHHHHHHHHHHT-SSHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHHHhcCC--cccchhhHHHHHHHHHHhhcCCcHHHH--HHhHHHHH
Confidence 3 256679999999983 222 23332 2 222222323 111112234466678899999988877 45666665
Q ss_pred Hhc---CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---CccchhhhHHHHHHHhcchhHHHHHH
Q 007670 190 IGS---GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLKIFESKRFDKMIEAW 260 (594)
Q Consensus 190 A~a---~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g---d~f~py~~~~m~sLEs~RfDK~i~lW 260 (594)
..+ +.... -.+...... .+-.-..++.+...|..+-...+ +...-|.+++-+.+...++|..+.-|
T Consensus 580 ~~i~~la~~~~-~~~~~~~~~----~~l~~~~~~q~~~Ll~l~~ss~~~sp~~~ALfYDELA~li~~~~l~~~~~~w 651 (1426)
T PF14631_consen 580 MMIKHLAAKNS-ESDSSSSER----SNLSDEQCKQATSLLELVQSSSEQSPEALALFYDELANLIQSRKLDPKFLEW 651 (1426)
T ss_dssp HHHHHTT-----------------------HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHS---HHHHHH
T ss_pred HHHHHHHHHhc-cCCcccccc----ccCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 533 22211 001111100 00012234556666665444433 46666778888888989999955545
No 160
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=86.09 E-value=18 Score=38.56 Aligned_cols=154 Identities=13% Similarity=0.203 Sum_probs=100.1
Q ss_pred hHHHHHhh-hhcCCCCCCcchHH-HHHHHHHHHhhh--ccccchHHHHHHHHhh----hcCC---ChhHHHHHHHHHHhh
Q 007670 41 LPTFLSCI-LSTNSSDKPGVRKE-CIHVIATLSNSH--NLSPYITKIINSITRN----FRDK---NSALQATCISTVSSL 109 (594)
Q Consensus 41 lp~fLs~L-~e~~ss~kp~~RKa-aI~lLGvlae~h--~isphLpkIL~~Ivrr----LkD~---Ds~VR~Ac~~ALG~L 109 (594)
+|+++..+ .+|..+ .|..|.. .+.++++++.-. .+.++++.|+..|..- +.+. =|-.|..-..=|..+
T Consensus 69 i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i 147 (319)
T PF08767_consen 69 IPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAI 147 (319)
T ss_dssp HHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHH
Confidence 88989855 677654 6677765 455666666655 7889999998877633 3221 267888888888888
Q ss_pred chhhhcch--hH-HhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCC---Cc-----chhHHHHHHHHHHHhcCC-
Q 007670 110 SPRVGASA--FV-TMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQD---PD-----AGKLGRMEVRLERLLKSE- 174 (594)
Q Consensus 110 Ae~l~~~~--~~-~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~---~i-----~~yL~~L~~RL~klL~s~- 174 (594)
..++...- .. ..++.+++++. .+.++.+...+..+|..++++... +. ..|+-.++..++..+...
T Consensus 148 ~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~ 227 (319)
T PF08767_consen 148 NEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSD 227 (319)
T ss_dssp HHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 77764211 11 14556666654 678999999999999999999754 22 135556777777776433
Q ss_pred ---chhhHHHHHHHHHHHHhcCcC
Q 007670 175 ---VFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 175 ---~fkaK~alL~aIGSiA~a~~~ 195 (594)
.|+....+|..+-.++..+..
T Consensus 228 Hk~gf~~q~~iL~~Lf~~ve~~~i 251 (319)
T PF08767_consen 228 HKSGFKLQSQILSNLFRLVESGSI 251 (319)
T ss_dssp -GGGHHHHHHHHHHHHHHHHTT-S
T ss_pred cHHHHHHHHHHHHHHHHHHHcccc
Confidence 566666677666666555444
No 161
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=86.03 E-value=2.5 Score=44.40 Aligned_cols=176 Identities=18% Similarity=0.215 Sum_probs=95.6
Q ss_pred HHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhcCCC--------------ChHHHHHhhhhcCCCCCCcchHHHHHHHHH
Q 007670 5 LKTSVNGLLNKL-SDRDTYSQAAKELDSIAATVDPT--------------LLPTFLSCILSTNSSDKPGVRKECIHVIAT 69 (594)
Q Consensus 5 Lk~rvl~~L~KL-sDrDT~r~A~~eLD~LA~~Lppe--------------~lp~fLs~L~e~~ss~kp~~RKaaI~lLGv 69 (594)
...-++..|.++ ++.||.+..+..++.|...-|.- -+.+|+. ...+++++....+...|+.
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~----ll~~~D~~i~~~a~~iLt~ 131 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLK----LLDRNDSFIQLKAAFILTS 131 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHH----H-S-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHH----HhcCCCHHHHHHHHHHHHH
Confidence 344567888899 89999999999999988766511 1333333 4556789999999999999
Q ss_pred HHhhh--cc----ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh-cchh--HHhHHHHHHHHc----cCCChh
Q 007670 70 LSNSH--NL----SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASAF--VTMLKLLSDALF----TEQDTN 136 (594)
Q Consensus 70 lae~h--~i----sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~-~~~~--~~~lkPL~eaL~----~eq~k~ 136 (594)
+.... .. ...|+.++..+...++.++..++..|+.+++.|...=. +..+ ...+++|+..|. .....+
T Consensus 132 Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 132 LLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp HHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred HHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 86665 22 24677777777777777778888899988888863321 1112 126777777661 123333
Q ss_pred HH--HHHHHHHHHH------HhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHH
Q 007670 137 AQ--VGAALCLAAT------IDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVI 190 (594)
Q Consensus 137 vQ--~~Aa~ALaav------vE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA 190 (594)
+| =-++.|+=-+ ++.+. ..+ +++.|..+++.. -=|+-..+++++--++
T Consensus 212 ~Ql~Y~~ll~lWlLSF~~~~~~~~~---~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~ 268 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSFEPEIAEELN---KKY---LIPLLADILKDSIKEKVVRVSLAILRNLL 268 (312)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHH---TTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHh---ccc---hHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 44 4777776422 22211 112 666666666433 3344444555555444
No 162
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=85.95 E-value=60 Score=35.74 Aligned_cols=247 Identities=15% Similarity=0.176 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccch----HHHHHHHHhh
Q 007670 19 RDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYI----TKIINSITRN 90 (594)
Q Consensus 19 rDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphL----pkIL~~Ivrr 90 (594)
|++.-.-+..|+.+-+..-+-+ +|.++.-|+--.-+++..++--+..-+|-+.+.| .++.-+ ..|++.|+--
T Consensus 57 rekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildc 136 (524)
T KOG4413|consen 57 REKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDC 136 (524)
T ss_pred cchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHH
Confidence 3466667888999888875555 9999999988888999999999999999998888 444433 3677777777
Q ss_pred hcCCChhHHHHHHHHHHhhchhhhc-----------c---------h-hHH---hHHHHHHHHccCC---ChhHHHHHHH
Q 007670 91 FRDKNSALQATCISTVSSLSPRVGA-----------S---------A-FVT---MLKLLSDALFTEQ---DTNAQVGAAL 143 (594)
Q Consensus 91 LkD~Ds~VR~Ac~~ALG~LAe~l~~-----------~---------~-~~~---~lkPL~eaL~~eq---~k~vQ~~Aa~ 143 (594)
+-..|-.|-+|+.+++.+++.+-.- + + ..+ ++..+++...-.. +.....|-.-
T Consensus 137 IggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLld 216 (524)
T KOG4413|consen 137 IGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLD 216 (524)
T ss_pred HcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence 8888999999999999998865421 0 0 000 1222222211000 0000011111
Q ss_pred HHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchH---------------------
Q 007670 144 CLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--------------------- 201 (594)
Q Consensus 144 ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~--------------------- 201 (594)
-|.+=.-+..|.. ..-.-.|...|...=.+..|-++..++..|.+|+..+ ...||-.
T Consensus 217 lLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGa-dsdPfekfralmgfgkffgkeaimdvse 295 (524)
T KOG4413|consen 217 LLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGA-DSDPFEKFRALMGFGKFFGKEAIMDVSE 295 (524)
T ss_pred HHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCC-CCCcHHHHHHHHHHHHHhcchHHhhcCH
Confidence 1111111112221 1112223333444444557778888888888887432 2223211
Q ss_pred -HHHHHHHhh-------hcCCcHHHHHHHHHHHHHHHHHc-C-Ccc----chhhhHHH-HHHHhcchhH---HHHHHhhc
Q 007670 202 -GLVSCLLGF-------LSSQDWAARKAAAEALWRLAVVE-K-DAV----PEFKGKCL-KIFESKRFDK---MIEAWKQV 263 (594)
Q Consensus 202 -~lm~~L~e~-------L~seDw~lRKaAaDaLg~IA~a~-g-d~f----~py~~~~m-~sLEs~RfDK---~i~lWk~i 263 (594)
++...+.-+ +..+|-+...+|+|+||-+.... | +.+ .|-+..++ .++....--| +|.....|
T Consensus 296 eaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaI 375 (524)
T KOG4413|consen 296 EAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAI 375 (524)
T ss_pred HHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence 111222222 22468888899999999999863 4 433 23444544 5655555555 77777777
Q ss_pred CCC
Q 007670 264 PDL 266 (594)
Q Consensus 264 ~~v 266 (594)
++.
T Consensus 376 age 378 (524)
T KOG4413|consen 376 AGE 378 (524)
T ss_pred hcc
Confidence 743
No 163
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.58 E-value=18 Score=43.35 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=47.9
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH
Q 007670 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM 163 (594)
Q Consensus 84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L 163 (594)
|-.|.+...|+.+-||+-++.|+-.|=.-- .....-|.-+++-|+.+..+.|-.+|.+|.+.+|- + -...+++=
T Consensus 145 llAIk~~~~D~s~yVRk~AA~AIpKLYsLd--~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCP---e-rldLIHkn 218 (968)
T KOG1060|consen 145 LLAIKKAVTDPSPYVRKTAAHAIPKLYSLD--PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCP---E-RLDLIHKN 218 (968)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhHHHhcCC--hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhch---h-HHHHhhHH
Confidence 334444444444444444444443332111 11122555566666666666666666665554432 1 23455666
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670 164 EVRLERLLKSEVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 164 ~~RL~klL~s~~fkaK~alL~aIGSiA 190 (594)
-.||+.+|..=.-=-+..+|..+---|
T Consensus 219 yrklC~ll~dvdeWgQvvlI~mL~RYA 245 (968)
T KOG1060|consen 219 YRKLCRLLPDVDEWGQVVLINMLTRYA 245 (968)
T ss_pred HHHHHhhccchhhhhHHHHHHHHHHHH
Confidence 666777773222223444555554444
No 164
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=85.21 E-value=12 Score=43.95 Aligned_cols=126 Identities=10% Similarity=0.213 Sum_probs=91.0
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---cc-ccchHHH
Q 007670 9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NL-SPYITKI 83 (594)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~i-sphLpkI 83 (594)
+.-+++.=.-.++.-+=++-+|.|.+-++++. ...+|+.|+.+..+.+...-..++..++.+++.- ++ .+-||+|
T Consensus 354 l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l 433 (700)
T KOG2137|consen 354 LKPIYSASDPKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRL 433 (700)
T ss_pred HHHHhccCCcccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHh
Confidence 33444442334577778899999999999888 8889999998888889999999999999998877 22 2334444
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHH
Q 007670 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQ 138 (594)
Q Consensus 84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ 138 (594)
... -++-....|+..|+.++|.+.+.+.+-...-.+.|++..+ .-.++.+-
T Consensus 434 ~~l---~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv 484 (700)
T KOG2137|consen 434 KNL---AFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIV 484 (700)
T ss_pred hcc---hhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHH
Confidence 443 4566778899999999999997773222223777888777 23455443
No 165
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=85.13 E-value=7.8 Score=34.29 Aligned_cols=83 Identities=18% Similarity=0.308 Sum_probs=66.8
Q ss_pred HHHHHHhhcCCChh--HHHHHHHHHHHHHhhcC-CCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH
Q 007670 7 TSVNGLLNKLSDRD--TYSQAAKELDSIAATVD-PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK 82 (594)
Q Consensus 7 ~rvl~~L~KLsDrD--T~r~A~~eLD~LA~~Lp-pe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk 82 (594)
...-.++..|.|.. .+.-|+..|..++++-+ +-. ++.++..+.+...++++++==.||..|+.||..| =..
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-----p~~ 77 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-----PDE 77 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-----hHH
Confidence 45567788888888 77889999999999876 444 9999999999999999999999999999999876 123
Q ss_pred HHHHHHhhhcCC
Q 007670 83 IINSITRNFRDK 94 (594)
Q Consensus 83 IL~~IvrrLkD~ 94 (594)
+++.+++...|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 566666665554
No 166
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=85.05 E-value=31 Score=39.01 Aligned_cols=189 Identities=16% Similarity=0.131 Sum_probs=116.3
Q ss_pred HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----cc-ccchHHHHHHHHh-hhcCCChhHHHHHHHHHHhhchhhh
Q 007670 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NL-SPYITKIINSITR-NFRDKNSALQATCISTVSSLSPRVG 114 (594)
Q Consensus 42 p~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~i-sphLpkIL~~Ivr-rLkD~Ds~VR~Ac~~ALG~LAe~l~ 114 (594)
|.||..+.+.+.|.+...--.+.+++|..|+-- ++ ..+|.++|..+.+ .--|.+..+.+||+-||..|+=..+
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 447788888888888888899999999997643 33 3458999999998 7788889999999999999876654
Q ss_pred cch-hH-H-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh--HHHHHHHHHHHhcCCchh-hHHHHHHHHHH
Q 007670 115 ASA-FV-T-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK--LGRMEVRLERLLKSEVFK-AKAAGLVVVGS 188 (594)
Q Consensus 115 ~~~-~~-~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y--L~~L~~RL~klL~s~~fk-aK~alL~aIGS 188 (594)
... +. + +..-++--| .--.|.||-.-.+-|--++++.++.-.+. =+++.+||..--++++|. +-.--.-.+..
T Consensus 394 nka~~~~aGvteaIL~~l-k~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~ 472 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQL-KLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLG 472 (604)
T ss_pred chhhccccchHHHHHHHH-HhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHH
Confidence 321 11 1 111111112 11234455555555555566543322222 256888888888888876 21112223333
Q ss_pred HHhcCc---Cc--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 189 VIGSGA---VD--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 189 iA~a~~---~~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
++..++ .. .|- ...+..++..++.+..-....|.-+|..++..
T Consensus 473 lIkHs~~kdv~~tvpk-sg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~ 520 (604)
T KOG4500|consen 473 LIKHSKYKDVILTVPK-SGGIKEKVSMFTKNHINMQNEALVALLSTESK 520 (604)
T ss_pred HHHhhHhhhhHhhccc-cccHHHHHHHHHHhhHHHhHHHHHHHHHHHHH
Confidence 332211 11 121 12367777777777777777777777777764
No 167
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.95 E-value=17 Score=41.74 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcC--CChh
Q 007670 21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRD--KNSA 97 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD--~Ds~ 97 (594)
++....+.|.-+|--+..+. +.....-+.+ ..+.|..=.+++-.|..++.. +.|+=..+||-|++.+.. ..+.
T Consensus 368 fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~--~~~~e~~i~pevl~~i~nlp~Q~~ 443 (559)
T KOG2081|consen 368 FRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKN--VSPEENTIMPEVLKLICNLPEQAP 443 (559)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhcc--CCccccchHHHHHHHHhCCccchh
Confidence 44445555555666666655 6655555554 345566677777777766554 444444444444444433 2235
Q ss_pred HHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc-cCCChhHHHHHHHHHHHHHhhcCCCc---chhHHHHHHHHHHHhcC
Q 007670 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALF-TEQDTNAQVGAALCLAATIDAAQDPD---AGKLGRMEVRLERLLKS 173 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~-~eq~k~vQ~~Aa~ALaavvE~l~~~i---~~yL~~L~~RL~klL~s 173 (594)
||.+++--+|.+++|+...|. ++.|+...++ +-+.+..+.+|+.|...++...-+.. .+++-.|..-+...+-+
T Consensus 444 ~~~ts~ll~g~~~ew~~~~p~--~le~v~~~~~~~~~~~~~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~ 521 (559)
T KOG2081|consen 444 LRYTSILLLGEYSEWVEQHPE--LLEPVLRYIRQGLQLKRLASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN 521 (559)
T ss_pred HHHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc
Confidence 999999999999999976663 4444444443 22455688999999999999875443 45555555544444434
Q ss_pred CchhhHHHHHHHHHHHH
Q 007670 174 EVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 174 ~~fkaK~alL~aIGSiA 190 (594)
+- +-. ++-.|..++
T Consensus 522 ~e--~a~-l~~~~s~i~ 535 (559)
T KOG2081|consen 522 EE--AAC-LLQGISLII 535 (559)
T ss_pred HH--HHH-HHHHHHHHH
Confidence 22 211 444555444
No 168
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=84.52 E-value=1.9 Score=42.43 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=71.2
Q ss_pred ccccchHHHHHHHHhhhcC-C-----------------ChhHHHHHHHHHHhhchhhhcchh-HHhHHHHHHHHccCCCh
Q 007670 75 NLSPYITKIINSITRNFRD-K-----------------NSALQATCISTVSSLSPRVGASAF-VTMLKLLSDALFTEQDT 135 (594)
Q Consensus 75 ~isphLpkIL~~IvrrLkD-~-----------------Ds~VR~Ac~~ALG~LAe~l~~~~~-~~~lkPL~eaL~~eq~k 135 (594)
.+.|||+.|+|.|..-++= + .--+|.+|.++|-.+-+.+...-. ..|+.-+...| ++ +.
T Consensus 2 li~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL-~D-~~ 79 (169)
T PF08623_consen 2 LIRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGL-KD-EH 79 (169)
T ss_dssp GTTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTT-SS--H
T ss_pred chHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhc-CC-cH
Confidence 4679999999999865542 2 256899999999998776643322 23666666666 55 78
Q ss_pred hHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q 007670 136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK 172 (594)
Q Consensus 136 ~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~ 172 (594)
.++.-++.-|.+++...+..+.+.|..|++.|-+.|+
T Consensus 80 DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 80 DIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 8888999999999998887777778888888888884
No 169
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=84.35 E-value=53 Score=37.41 Aligned_cols=205 Identities=15% Similarity=0.118 Sum_probs=110.2
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHH
Q 007670 25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS 104 (594)
Q Consensus 25 A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ 104 (594)
.+-.|-.+.+.++.++|..+...+.. .. ...|+--+-+|+.+...-. +.+|...++..+-.-.+ +..
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~---~~~r~~~~Dal~~~GT~~a--------~~~i~~~i~~~~~~~~e-a~~ 378 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK---KKARRIFLDAVAQAGTPPA--------LKFIKQWIKNKKITPLE-AAQ 378 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC---HHHHHHHHHHHHhcCCHHH--------HHHHHHHHHcCCCCHHH-HHH
Confidence 34445555666676667776666653 11 3455555555554433221 12233333333322111 222
Q ss_pred HHHhhchhhhcchhHHhHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhc-CCC------c-chhHHHHHHHHHHHhcC
Q 007670 105 TVSSLSPRVGASAFVTMLKLLSDALFT---EQDTNAQVGAALCLAATIDAA-QDP------D-AGKLGRMEVRLERLLKS 173 (594)
Q Consensus 105 ALG~LAe~l~~~~~~~~lkPL~eaL~~---eq~k~vQ~~Aa~ALaavvE~l-~~~------i-~~yL~~L~~RL~klL~s 173 (594)
.+..+...+. .|...+++=+++.+.. .+.+.+-.+|.+++..++-.. .+. + ..|++.|...|.++.+.
T Consensus 379 ~~~~~~~~~~-~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 457 (574)
T smart00638 379 LLAVLPHTAR-YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK 457 (574)
T ss_pred HHHHHHHhhh-cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc
Confidence 3333333332 1222244444444421 235556678888888888743 111 1 34667777777777766
Q ss_pred CchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-C--CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHh
Q 007670 174 EVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-S--QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFES 250 (594)
Q Consensus 174 ~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-s--eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs 250 (594)
.+..-+.+.|-||| .+| .+.+++.|..++. + ..-.+|.+|+.+|..+|....+.+++. ++.++.+
T Consensus 458 ~~~~~~~~~LkaLG---N~g------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~---l~~i~~n 525 (574)
T smart00638 458 GDEEEIQLYLKALG---NAG------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV---LLPIYLN 525 (574)
T ss_pred CCchheeeHHHhhh---ccC------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH---HHHHHcC
Confidence 66666666676776 333 2445566666665 2 246789999999999987655555433 4455655
Q ss_pred cchhH
Q 007670 251 KRFDK 255 (594)
Q Consensus 251 ~RfDK 255 (594)
...|-
T Consensus 526 ~~e~~ 530 (574)
T smart00638 526 RAEPP 530 (574)
T ss_pred CCCCh
Confidence 55554
No 170
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=84.30 E-value=16 Score=37.66 Aligned_cols=159 Identities=18% Similarity=0.175 Sum_probs=111.8
Q ss_pred chHHHHHHHHHHHhhh----------ccccchHHHHHHHHhhhcCCC-hhHHHHHHHHHHhhchhhhcc--h-hHH----
Q 007670 59 VRKECIHVIATLSNSH----------NLSPYITKIINSITRNFRDKN-SALQATCISTVSSLSPRVGAS--A-FVT---- 120 (594)
Q Consensus 59 ~RKaaI~lLGvlae~h----------~isphLpkIL~~IvrrLkD~D-s~VR~Ac~~ALG~LAe~l~~~--~-~~~---- 120 (594)
.=||+-.+||.+++.. +-..++.+|--.++.-|-.-- -++=.++..++..+|+.+... + ...
T Consensus 63 ~iKE~s~Ll~~l~~~~~~~~~~~~~~ls~~~i~~ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~ 142 (255)
T PF10350_consen 63 SIKESSLLLGTLVEKIPLPPDSSNSLLSPDQIEKIGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEE 142 (255)
T ss_pred HHHHHHHHHHHHHHhccccCcccccCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHH
Confidence 4478888899988432 333467777777777765533 467788999999999999732 2 111
Q ss_pred hHHHHHHHHccC-CCh-hHH---HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCch--------hhHHHHHHHHH
Q 007670 121 MLKLLSDALFTE-QDT-NAQ---VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF--------KAKAAGLVVVG 187 (594)
Q Consensus 121 ~lkPL~eaL~~e-q~k-~vQ---~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~f--------kaK~alL~aIG 187 (594)
.+.-+++.+.++ +.. .+- +|--+++.+++-+.+....+.|+..|.+|+++.+.+.- ..+..++..+.
T Consensus 143 WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr 222 (255)
T PF10350_consen 143 WLDELLEAIESKGQQKLSITRRSAGLPFLILAILSAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILR 222 (255)
T ss_pred HHHHHHHHHhcccccccccccccCcHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHH
Confidence 666667776433 111 122 26667788888876554447899999999999988744 36778999999
Q ss_pred HHHhcCcC---cCCchHHHHHHHHhhhcCCcHH
Q 007670 188 SVIGSGAV---DGSGLKGLVSCLLGFLSSQDWA 217 (594)
Q Consensus 188 SiA~a~~~---~~pyf~~lm~~L~e~L~seDw~ 217 (594)
+|+.-+.- ..||+...+..-...+.+++|+
T Consensus 223 ~if~ds~L~~~~~~yi~~~l~lai~~f~s~~Wa 255 (255)
T PF10350_consen 223 AIFRDSKLSEDVSPYIEDALILAIKGFSSPDWA 255 (255)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 99965533 3599999888888888899994
No 171
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=83.91 E-value=1.9 Score=50.21 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=53.8
Q ss_pred HHHHHHHHHhhcC---CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh
Q 007670 4 ALKTSVNGLLNKL---SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH 74 (594)
Q Consensus 4 ~Lk~rvl~~L~KL---sDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h 74 (594)
+.-++++-+|.|| -||-++-.=++-++..+.+|++++ -..+++.+..-+.+.++..|..+|+.|.+||.--
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL 400 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKL 400 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh
Confidence 3456677777776 577788888999999999998766 5555555555555667889999999999986544
No 172
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=83.70 E-value=45 Score=34.82 Aligned_cols=128 Identities=12% Similarity=0.054 Sum_probs=87.7
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc---c---hhHHHHHHHHHHHhc--------CCchhhHHHHHHHH
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD---A---GKLGRMEVRLERLLK--------SEVFKAKAAGLVVV 186 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i---~---~yL~~L~~RL~klL~--------s~~fkaK~alL~aI 186 (594)
+++|++..+ ++-++.+...+|.||..++++.+... . ++..-+-+-+..+|- .++...=.+++.|+
T Consensus 120 iiP~iL~ll-DD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLL-DDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 566666555 88899999999999999999987655 2 234444455666775 45666666678888
Q ss_pred HHHHhcC--cCcCCchHHHHHHHHh-hhc----CC---cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670 187 GSVIGSG--AVDGSGLKGLVSCLLG-FLS----SQ---DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (594)
Q Consensus 187 GSiA~a~--~~~~pyf~~lm~~L~e-~L~----se---Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE 249 (594)
-+++.+- ....++...+...|.+ .|. .. .-.+|.+.++.|..+...+|-...-|..+++-.|.
T Consensus 199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~ 271 (282)
T PF10521_consen 199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLS 271 (282)
T ss_pred HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 8887653 2223444444444444 222 23 48889999999999999999766667777776554
No 173
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.28 E-value=42 Score=38.72 Aligned_cols=159 Identities=14% Similarity=0.177 Sum_probs=97.7
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccc
Q 007670 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY 79 (594)
Q Consensus 3 ~~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isph 79 (594)
+.||+-.+...+--.+-.....|+--|..++.+++|+. +|-.|..|+.- . ...+.|..+++++|.+++--...|.
T Consensus 387 e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl-p-~Q~~~~~ts~ll~g~~~ew~~~~p~ 464 (559)
T KOG2081|consen 387 ECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL-P-EQAPLRYTSILLLGEYSEWVEQHPE 464 (559)
T ss_pred HHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC-c-cchhHHHHHHHHHHHHHHHHHhCcH
Confidence 34555554444434455678889999999999998777 88888888764 2 2334999999999999888755554
Q ss_pred -hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH-H---hHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007670 80 -ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV-T---MLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (594)
Q Consensus 80 -LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~-~---~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l 152 (594)
|...+.++..++++.. .-.|+..+.-.++..+..+ +.. . +..-|...+ -+..++. -+..+..++-++
T Consensus 465 ~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~---~~~e~a~-l~~~~s~i~~~l 538 (559)
T KOG2081|consen 465 LLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQ---INEEAAC-LLQGISLIISNL 538 (559)
T ss_pred HHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---ccHHHHH-HHHHHHHHHhcC
Confidence 6666678888887766 4444444444444444221 100 0 111111111 1333333 445566667777
Q ss_pred CCC-cchhHHHHHHHHHH
Q 007670 153 QDP-DAGKLGRMEVRLER 169 (594)
Q Consensus 153 ~~~-i~~yL~~L~~RL~k 169 (594)
+.. ....+.+||.+.+.
T Consensus 539 p~~k~~~~~~el~~~~l~ 556 (559)
T KOG2081|consen 539 PAHKAKIALEELCEPQLR 556 (559)
T ss_pred CHhhhhHHHHHHhhHHHh
Confidence 644 35578888877554
No 174
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=83.26 E-value=22 Score=40.98 Aligned_cols=143 Identities=15% Similarity=0.210 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHH-
Q 007670 23 SQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA- 100 (594)
Q Consensus 23 r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~- 100 (594)
+.=+..|-..+..|+.+ ...|+..|..... .-++..+++-+..++.|+..| ..|++.++..+++.+..+....-.
T Consensus 54 ~~~L~~L~~~Vs~Ld~~-~~~LV~ail~~~W~~~~~~~v~~y~~Fl~~Lvsa~--~~yl~~vl~~LV~~f~p~~~~~~~~ 130 (563)
T PF05327_consen 54 IRWLKALSSCVSLLDSS-CKQLVEAILSLNWLGRDEDFVEAYIQFLINLVSAQ--PKYLSPVLSMLVKNFIPPPSSIAEW 130 (563)
T ss_dssp HHHHHHHHHGGGGG-SC-CHHHHHHHHT-TGGGS-HHHHHHHHHHHHHHHHH---GGGHHHHHHHHHHGGGS-HHHHHH-
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhccCCCcccccc
Confidence 33344444455556776 7777777766533 344566777777788887777 558999999999999887765332
Q ss_pred -------------HHHHHHHhhchhhhcchhHHhHHHHHHHHc--cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 007670 101 -------------TCISTVSSLSPRVGASAFVTMLKLLSDALF--TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV 165 (594)
Q Consensus 101 -------------Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~--~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~ 165 (594)
-+-.+|..+...+ +....+|.|++..-+ ......+|.+=...|=.+++..+.--...|..+++
T Consensus 131 ~~~~~~~~~~~~~~vH~~L~~Il~lv--P~s~~~L~~~l~~~FP~~~~~~~~~~~Yv~NlL~l~~Y~P~L~~~Il~lIi~ 208 (563)
T PF05327_consen 131 PGCPPEKRREIYERVHDALQKILRLV--PTSPSFLIPILVQNFPHKRKSKDEHVNYVRNLLRLTEYCPELRSDILSLIIE 208 (563)
T ss_dssp --------------HHHHHHHHHHH---GGGHHHHHHHHHHTS--TTS-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHH
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHcCcCCCCChHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 3556666666666 223347777777666 23455666666666666777663333567888888
Q ss_pred HHHHH
Q 007670 166 RLERL 170 (594)
Q Consensus 166 RL~kl 170 (594)
||+++
T Consensus 209 rLi~i 213 (563)
T PF05327_consen 209 RLIKI 213 (563)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88877
No 175
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=83.10 E-value=85 Score=35.20 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=69.8
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHh--hcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH
Q 007670 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAA--TVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK 82 (594)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~--~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk 82 (594)
+-+.++.+-.+-++.+-.+..++.||.+.. .+|++.++.++.-|+...... ...+.+.+.+-.|+..|.- ..
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g----~~ 250 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG----HS 250 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH----HH
Confidence 344555565666777788999999999998 689999999999998875544 6788899999999887721 34
Q ss_pred HHHHHHhhhcCCC------hhHHHHHHHHHHhhchhh
Q 007670 83 IINSITRNFRDKN------SALQATCISTVSSLSPRV 113 (594)
Q Consensus 83 IL~~IvrrLkD~D------s~VR~Ac~~ALG~LAe~l 113 (594)
++-.++.-|++++ ..|-+=|++-++.+.-..
T Consensus 251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 4455555553333 223334444555544433
No 176
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.91 E-value=51 Score=39.73 Aligned_cols=205 Identities=16% Similarity=0.205 Sum_probs=138.2
Q ss_pred hHHHHHHHHHhhcC-CCh-h--HHHHHHHHHHHHHhhc--CCCChHHHHHhhhh-------cCCCCCCcchHHHHHHHHH
Q 007670 3 HALKTSVNGLLNKL-SDR-D--TYSQAAKELDSIAATV--DPTLLPTFLSCILS-------TNSSDKPGVRKECIHVIAT 69 (594)
Q Consensus 3 ~~Lk~rvl~~L~KL-sDr-D--T~r~A~~eLD~LA~~L--ppe~lp~fLs~L~e-------~~ss~kp~~RKaaI~lLGv 69 (594)
.|+|-.+.-++.+| .|. | +.-.+++.|..++... .+++|-+++.-+.. ..+. -..|-..+.+|+.
T Consensus 521 ~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e--~Dtk~~VL~~ls~ 598 (978)
T KOG1993|consen 521 LELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEE--CDTKTSVLNLLST 598 (978)
T ss_pred HhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHH
Confidence 57777787777776 555 3 6667788888888874 57776665544322 2222 2468888999999
Q ss_pred HHhhh--ccccchHHHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcch--hHHhHHHHHHHHccCCChhHHH----
Q 007670 70 LSNSH--NLSPYITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQV---- 139 (594)
Q Consensus 70 lae~h--~isphLpkIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~~--~~~~lkPL~eaL~~eq~k~vQ~---- 139 (594)
+.+-. .|+||..+|++++-..-+. .++.+|-|...+|-+|..-+..++ +..|+-|.++.=.+-+.|.++.
T Consensus 599 lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 599 LIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhh
Confidence 86655 7889999998888765554 456899999999999999997665 4459999998875555666663
Q ss_pred HHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcCcCcC-CchHHHHHHHHhhhc
Q 007670 140 GAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI-GSGAVDG-SGLKGLVSCLLGFLS 212 (594)
Q Consensus 140 ~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA-~a~~~~~-pyf~~lm~~L~e~L~ 212 (594)
|..+= -.++++. ....|-|-.|+|-|.-.+.... ..=+.++..|.|-+ --+.+|. -|+..+...+.++|.
T Consensus 679 gmeLW-~~~L~n~-~~l~p~ll~L~p~l~~~iE~st-e~L~t~l~Ii~sYilLd~~~fl~~y~~~i~k~~~~~l~ 750 (978)
T KOG1993|consen 679 GMELW-LTTLMNS-QKLTPELLLLFPHLLYIIEQST-ENLPTVLMIISSYILLDNTVFLNDYAFGIFKKLNDLLD 750 (978)
T ss_pred HHHHH-HHHHhcc-cccCHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 43332 3445554 3345666667777777775432 22234666666644 3355675 788888888877765
No 177
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=82.15 E-value=37 Score=39.65 Aligned_cols=207 Identities=16% Similarity=0.180 Sum_probs=111.2
Q ss_pred CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccchHHHHH--------------------------
Q 007670 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYITKIIN-------------------------- 85 (594)
Q Consensus 37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isphLpkIL~-------------------------- 85 (594)
.++-+.+.++.|..++.++....|=.|++.|..|+-.+ .+.|.++.++.
T Consensus 297 ~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrL 376 (898)
T COG5240 297 GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRL 376 (898)
T ss_pred CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHH
Confidence 44447777888888888888888888888888886554 33344444443
Q ss_pred --HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH
Q 007670 86 --SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM 163 (594)
Q Consensus 86 --~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L 163 (594)
.|...+.|-.-...-.+.+|+..|+-..... ..+++.=|...|.++-.-.--..+.-|+-.++++.++.-.-.|..
T Consensus 377 v~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~- 454 (898)
T COG5240 377 VNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-KLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEV- 454 (898)
T ss_pred HHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHH-
Confidence 3333333322223333444444444433111 112555556666544444444555555555555544322223333
Q ss_pred HHHHHHHhcCCchh-hHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhh
Q 007670 164 EVRLERLLKSEVFK-AKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFK 241 (594)
Q Consensus 164 ~~RL~klL~s~~fk-aK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~ 241 (594)
|+..+..--|+ +-.-+|+.+| .-|.-+ .|. ..+.++-.-+.-+.--+|.+|..||...|....+.|.|
T Consensus 455 ---LC~fIEDcey~~I~vrIL~iLG---~EgP~a~~P~--~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~-- 524 (898)
T COG5240 455 ---LCTFIEDCEYHQITVRILGILG---REGPRAKTPG--KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSP-- 524 (898)
T ss_pred ---HHHHHhhcchhHHHHHHHHHhc---ccCCCCCCcc--hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccH--
Confidence 33344322222 1111333333 222112 132 23556666666777889999999999999987787776
Q ss_pred hHHHHHHHhcchhH
Q 007670 242 GKCLKIFESKRFDK 255 (594)
Q Consensus 242 ~~~m~sLEs~RfDK 255 (594)
.++..+|-.|==|+
T Consensus 525 ~sv~~~lkRclnD~ 538 (898)
T COG5240 525 QSVENALKRCLNDQ 538 (898)
T ss_pred HHHHHHHHHHhhcc
Confidence 34445555555555
No 178
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=81.96 E-value=6.4 Score=35.61 Aligned_cols=126 Identities=17% Similarity=0.085 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC----c------------chhH
Q 007670 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP----D------------AGKL 160 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~----i------------~~yL 160 (594)
.||.-.+.+++.++.+.--+.-..++.-++..+. .++.........|..+.|...+- + ...+
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~--~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~ 80 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQ--SSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNS 80 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCchHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHH
Confidence 3555556666666655521111236666666653 24555555666666666665320 0 1223
Q ss_pred HHHHHHHHHHhcCCc----hhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007670 161 GRMEVRLERLLKSEV----FKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (594)
Q Consensus 161 ~~L~~RL~klL~s~~----fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaL 226 (594)
+.+++-+.++|.... -....+++.++++...-.....-.-..+++.+..+|.+++. |.+|+|+|
T Consensus 81 ~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~cl 148 (148)
T PF08389_consen 81 PDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHhC
Confidence 445555566665432 55667788888887763222110002367888888877665 88899987
No 179
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.81 E-value=1.3e+02 Score=36.25 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhhhc-CCChhHH
Q 007670 27 KELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFR-DKNSALQ 99 (594)
Q Consensus 27 ~eLD~LA~~Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~IvrrLk-D~Ds~VR 99 (594)
=|.-.+|-+++++. +..-+.+|.+.+++-.+..|--++-.+..||..- .+..| ...|+..|+ +.|++||
T Consensus 311 FeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~Ii~sLkterDvSir 386 (938)
T KOG1077|consen 311 FEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDTIINSLKTERDVSIR 386 (938)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHHHHHHhccccchHHH
Confidence 35667888998777 8999999999999999999988888877775544 55555 455667788 9999999
Q ss_pred HHHHHHHHhhchhh
Q 007670 100 ATCISTVSSLSPRV 113 (594)
Q Consensus 100 ~Ac~~ALG~LAe~l 113 (594)
+-++|=|=.+|+.-
T Consensus 387 rravDLLY~mcD~~ 400 (938)
T KOG1077|consen 387 RRAVDLLYAMCDVS 400 (938)
T ss_pred HHHHHHHHHHhchh
Confidence 99999998888755
No 180
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.61 E-value=10 Score=41.89 Aligned_cols=112 Identities=19% Similarity=0.263 Sum_probs=85.9
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-- 116 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-- 116 (594)
+--++.++ .+.+.-+|+.++.=|--+--.| .+..|+-.+++-+..++-|-|..||++....+--+...++.+
T Consensus 60 lkeLl~ql----kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~ 135 (393)
T KOG2149|consen 60 LKELLSQL----KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQ 135 (393)
T ss_pred HHHHHhhh----cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhh
Confidence 44444444 4678889999999888876668 777799999999999999999999999988887766666532
Q ss_pred -hhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670 117 -AFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (594)
Q Consensus 117 -~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~ 157 (594)
++.. ++.=+..|| .+--+.+|.-+..=|.-+++..++...
T Consensus 136 sp~~~l~~~yi~~AM-Thit~~i~~dslkfL~~Ll~~~~p~~~ 177 (393)
T KOG2149|consen 136 SPMVSLLMPYISSAM-THITPEIQEDSLKFLSLLLERYPDTFS 177 (393)
T ss_pred cchHHHHHHHHHHHH-hhccHHHHHhhHHHHHHHHHHcChHHH
Confidence 3333 666666777 677888998888888888886655433
No 181
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=81.54 E-value=4.2 Score=45.43 Aligned_cols=107 Identities=18% Similarity=0.090 Sum_probs=67.1
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-----chhhHHHHHHHHHHHHhcCcC
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-----VFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-----~fkaK~alL~aIGSiA~a~~~ 195 (594)
+++||++.+-.|.+...|..+|.+|+.+|+-.-..-..--.||+--|+.+|..+ -|......-.-|-++..-.+.
T Consensus 313 iIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~ 392 (441)
T PF12054_consen 313 IIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDK 392 (441)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhccc
Confidence 899999999888999999999999999999876433344578888899998544 333111122222222211111
Q ss_pred cC----CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670 196 DG----SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD 235 (594)
Q Consensus 196 ~~----pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd 235 (594)
.. ..++.- ..+-.=.|..|..+|..|+...|+
T Consensus 393 ~~~~~~~~~~~~--------~~~a~I~RrGA~~aL~~l~~~FG~ 428 (441)
T PF12054_consen 393 ADHADAASEERE--------QKEARIQRRGAELALEQLAKRFGS 428 (441)
T ss_pred ccccccccchhh--------hhhhHHHhcCHHHHHHHHHHHHhH
Confidence 00 000000 011244588899999999998884
No 182
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=81.33 E-value=68 Score=33.50 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=105.5
Q ss_pred hhcCCChhHHHHHHHHHHHHHhh--cCCCChHHHHHhhhhc--CCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHH
Q 007670 13 LNKLSDRDTYSQAAKELDSIAAT--VDPTLLPTFLSCILST--NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINS 86 (594)
Q Consensus 13 L~KLsDrDT~r~A~~eLD~LA~~--Lppe~lp~fLs~L~e~--~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~ 86 (594)
++||.|..+..-|++-|..|+.. ++++....++..|.+. .++.-...|..++.+|..+.+-| .+...=+.++..
T Consensus 48 ~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~ 127 (262)
T PF14500_consen 48 CSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYG 127 (262)
T ss_pred HHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHH
Confidence 46888888888889999998833 4566677788877653 34445678999999999998888 443333344444
Q ss_pred ---HHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc-------c--CCChh--HHHHHHHHHHHHHhhc
Q 007670 87 ---ITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF-------T--EQDTN--AQVGAALCLAATIDAA 152 (594)
Q Consensus 87 ---IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~-------~--eq~k~--vQ~~Aa~ALaavvE~l 152 (594)
++.+=|||-=.+ .+..-+-.+.... +...+..-||+.+. . .+++. ...--..+|...+=+.
T Consensus 128 ~i~~~~gEkDPRnLl--~~F~l~~~i~~~~---~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~ 202 (262)
T PF14500_consen 128 FIQLIDGEKDPRNLL--LSFKLLKVILQEF---DISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST 202 (262)
T ss_pred HHHHhccCCCHHHHH--HHHHHHHHHHHhc---ccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc
Confidence 334445554221 1121222222222 11225666666664 1 12331 1111122222222111
Q ss_pred CCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC--cCCchHHHHHHHH
Q 007670 153 QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV--DGSGLKGLVSCLL 208 (594)
Q Consensus 153 ~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~--~~pyf~~lm~~L~ 208 (594)
..+-+..+|-|+..|.+...-+|.-++.++...+..=+. ..||...+-..|.
T Consensus 203 ----~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 203 ----PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALK 256 (262)
T ss_pred ----HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 124456777788888888888998888888776643222 2366666655554
No 183
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=81.06 E-value=28 Score=43.69 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=79.0
Q ss_pred HHHhhcCCChh------H-HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch
Q 007670 10 NGLLNKLSDRD------T-YSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI 80 (594)
Q Consensus 10 l~~L~KLsDrD------T-~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL 80 (594)
.-+|++++|== | ...-++.|..+.+++.++.+-..+.++......+.|..|-.+++.+-...... .+-..+
T Consensus 127 v~~Ldrf~dfisd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~ 206 (1549)
T KOG0392|consen 127 VLALDRFGDFISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLL 206 (1549)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHH
Confidence 34566766532 1 22346788899999999888888888888877778888888777766654444 555788
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
+.++.+++..|.|+|--||..++.++...+...
T Consensus 207 ~~vl~~~i~~L~ds~ddv~~~aa~~l~~~~s~~ 239 (1549)
T KOG0392|consen 207 NLVLDFVIEGLEDSDDDVRSVAAQFLVPAPSIQ 239 (1549)
T ss_pred HHHHHHHHhhhhhcchHHHHHHHHHhhhhhHHH
Confidence 899999999999999999988887777666655
No 184
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=80.96 E-value=83 Score=34.54 Aligned_cols=207 Identities=12% Similarity=0.128 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHHHHhhcC------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhh
Q 007670 19 RDTYSQAAKELDSIAATVD------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNF 91 (594)
Q Consensus 19 rDT~r~A~~eLD~LA~~Lp------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrL 91 (594)
..-...|.+.+.-+..+-. .-+++.|+-.=.+.. +..-..|.+|++++=.+.+.. .....-.-++..|+.-.
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~-~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaia 117 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRD-NKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIA 117 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhccc-CCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHH
Confidence 4456666676665554211 111222222212211 223467999999998887775 33333456677788888
Q ss_pred cCCChhHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHH--HHHHH
Q 007670 92 RDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGR--MEVRL 167 (594)
Q Consensus 92 kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~--L~~RL 167 (594)
.+++-..|.+|.++|.-++-.-.+-.... -+++|+.++.+ ...+ .+-.++..++.-++.+. ..|+.. =++.+
T Consensus 118 e~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d---~~~~-~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l 193 (371)
T PF14664_consen 118 EHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID---GSFS-ISESLLDTLLYLLDSPRTRKYLRPGFDLESL 193 (371)
T ss_pred hCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh---ccHh-HHHHHHHHHHHHhCCcchhhhhcCCccHHHH
Confidence 88999999999999887775542211112 67899999953 2222 33445566666665553 344422 23333
Q ss_pred HHHhcCCc---------h-hhHHHHHHHHHHHHhc-CcCc--C-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 168 ERLLKSEV---------F-KAKAAGLVVVGSVIGS-GAVD--G-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 168 ~klL~s~~---------f-kaK~alL~aIGSiA~a-~~~~--~-pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
+.-+...+ . +.+. ..-+|.++-.. .|-. . +-| ..+..|.++|.-+.-.+|++..|.|..+-.+
T Consensus 194 ~apftd~~~~~~~~~~~~~~l~~-s~~ai~~~LrsW~GLl~l~~~~~-~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 194 LAPFTDFHYRKIKDDRELERLQA-SAKAISTLLRSWPGLLYLSMNDF-RGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHhhhhhhccccccchHHHHHHH-HHHHHHHHHhcCCceeeeecCCc-hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 33332221 1 1111 11233333332 3442 2 444 6789999999999889999999999988664
No 185
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=80.64 E-value=41 Score=35.18 Aligned_cols=115 Identities=14% Similarity=0.112 Sum_probs=76.5
Q ss_pred chHHHHHHHH-hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670 79 YITKIINSIT-RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (594)
Q Consensus 79 hLpkIL~~Iv-rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~ 157 (594)
.|..|+..++ ..++-+|..||..+...||.++-.-. .....++..++..+ ...+..++..|..|+--++-.=+....
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-~~a~~~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-ELAKEHLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 5668887555 89999999999999999999875542 11122666666666 445777887666555444332222221
Q ss_pred h---------hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670 158 G---------KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 158 ~---------yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~ 195 (594)
. .-..+..-+.+.|++.+..++..+...++-+.-.+..
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i 147 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI 147 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 1 1235777788888888777888888888777765543
No 186
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=80.58 E-value=37 Score=38.03 Aligned_cols=227 Identities=14% Similarity=0.112 Sum_probs=119.9
Q ss_pred hHHHHHHHHHhhcCCCh---hHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCC-CCcchHHHHHHHHHHHhhh-
Q 007670 3 HALKTSVNGLLNKLSDR---DTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSD-KPGVRKECIHVIATLSNSH- 74 (594)
Q Consensus 3 ~~Lk~rvl~~L~KLsDr---DT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~-kp~~RKaaI~lLGvlae~h- 74 (594)
++|-+.+++++.+-+.. .--|+-++.|-.+-..+-|-. +..|...+.....+| +|..=-...-++|+|....
T Consensus 25 ~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~ 104 (435)
T PF03378_consen 25 QQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVC 104 (435)
T ss_dssp HHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhcc
Confidence 45556666666653321 244555555444444432221 444444443333333 3444555666777774432
Q ss_pred -----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh----HHhHHHHHHHHccCCChhHHHHHHHHH
Q 007670 75 -----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF----VTMLKLLSDALFTEQDTNAQVGAALCL 145 (594)
Q Consensus 75 -----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~----~~~lkPL~eaL~~eq~k~vQ~~Aa~AL 145 (594)
.+..+-+.++|.+..-|+..=.-.--=+..-+++|-+....++. ..+++||+.-.+-+..-++- +...-|
T Consensus 105 ~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP-alvrLL 183 (435)
T PF03378_consen 105 EADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP-ALVRLL 183 (435)
T ss_dssp GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH-HHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC-cHHHHH
Confidence 55566677777776666543222222223344445444431121 13777777666555555653 344457
Q ss_pred HHHHhhcCCCcc--hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcCcCc-CCchHHHHHHHHhhhcC-CcHHHHH
Q 007670 146 AATIDAAQDPDA--GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI-GSGAVD-GSGLKGLVSCLLGFLSS-QDWAARK 220 (594)
Q Consensus 146 aavvE~l~~~i~--~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA-~a~~~~-~pyf~~lm~~L~e~L~s-eDw~lRK 220 (594)
.++++..+..+. +++..++..+-||+.+..... .....+.+|+ +...+. .||+..++..|-..|.+ .-....+
T Consensus 184 ~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~--~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~ 261 (435)
T PF03378_consen 184 QAYIKKDPSFIVANNQLEPILGVFQKLIASKANDH--YGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVK 261 (435)
T ss_dssp HHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHH--HHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcch--HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHH
Confidence 888887666653 689999999999998885443 2445677776 444444 59999999998888874 3344444
Q ss_pred HHHHHHHHHHHH
Q 007670 221 AAAEALWRLAVV 232 (594)
Q Consensus 221 aAaDaLg~IA~a 232 (594)
.-+-.++.++..
T Consensus 262 ~fv~F~~~~~~~ 273 (435)
T PF03378_consen 262 RFVVFLSLFAIK 273 (435)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555443
No 187
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.14 E-value=45 Score=42.77 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhh-hcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCC
Q 007670 21 TYSQAAKELDSIAATVDPTL-LPTFLSCIL-STNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKN 95 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~-e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~D 95 (594)
+..+|+...+.++....... .+.|+..+. -...+..+.+|-+.+.-+-.++=.+ +..++...|.-.+.+.|.|.+
T Consensus 1503 a~~~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~ 1582 (1710)
T KOG1851|consen 1503 AKNSALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQ 1582 (1710)
T ss_pred HHHHHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchH
Confidence 88899999999999986555 888998887 3344556777877666666554444 456778999999999999999
Q ss_pred hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHH-HHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQV-GAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (594)
Q Consensus 96 s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~-~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL 171 (594)
-.||.-++.+|+-|-..--.+-...--++....+.......++. ||+.+|-++|=..++.....+++.+--+....
T Consensus 1583 i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa 1659 (1710)
T KOG1851|consen 1583 IEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFA 1659 (1710)
T ss_pred HHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhc
Confidence 99999999888766443311100011223333332222333443 89999999999888766555555443333333
No 188
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.77 E-value=1e+02 Score=37.02 Aligned_cols=199 Identities=14% Similarity=0.080 Sum_probs=107.5
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~ 118 (594)
+.--++-|...+.++++..|--++++|+-++-.| ++.-|.. .|+|-|.|-|.+||-=+++=|--+ ..+...
T Consensus 297 iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gm---VskkNl 369 (877)
T KOG1059|consen 297 IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDLLYGM---VSKKNL 369 (877)
T ss_pred HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHH---hhhhhH
Confidence 4444555567788889999999999999999999 8877765 566789999999996666544332 223344
Q ss_pred HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc---CCCc---chhHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHHH-
Q 007670 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA---QDPD---AGKLGRMEVRLERLLKSEV-FKAKAAGLVVVGSVI- 190 (594)
Q Consensus 119 ~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l---~~~i---~~yL~~L~~RL~klL~s~~-fkaK~alL~aIGSiA- 190 (594)
..+++-|+..+......+.-.-- |-++|+.. .+.. -+++-.++..|.++=...+ -++-.+++. ++
T Consensus 370 ~eIVk~LM~~~~~ae~t~yrdel---l~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~D----v~i 442 (877)
T KOG1059|consen 370 MEIVKTLMKHVEKAEGTNYRDEL---LTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIID----VAI 442 (877)
T ss_pred HHHHHHHHHHHHhccchhHHHHH---HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHH----Hhe
Confidence 45888888888522221221111 22333332 2222 1222222222333222111 001111111 11
Q ss_pred hcCcCcCCchHHHHHHHHh-hhcCCcHHHHHHHHHHHHHHHHHcCC---ccchhhhHHHHHHHhcchhH
Q 007670 191 GSGAVDGSGLKGLVSCLLG-FLSSQDWAARKAAAEALWRLAVVEKD---AVPEFKGKCLKIFESKRFDK 255 (594)
Q Consensus 191 ~a~~~~~pyf~~lm~~L~e-~L~seDw~lRKaAaDaLg~IA~a~gd---~f~py~~~~m~sLEs~RfDK 255 (594)
.|. ..-|+.-..|..|.. .|...+-+.++.-++.|.+.|=+.|+ .+.. -.++++++=..|+|.
T Consensus 443 RV~-~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven-~~~~leamlrpr~~~ 509 (877)
T KOG1059|consen 443 RVP-SIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVEN-PNDTLEAMLRPRSDL 509 (877)
T ss_pred ech-hhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhhC-HHHHHHHHhcCcccc
Confidence 111 112333333333333 22223445566678888888887775 3332 377788888888887
No 189
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.76 E-value=9.9 Score=46.96 Aligned_cols=168 Identities=12% Similarity=0.180 Sum_probs=102.6
Q ss_pred CC-hHHHHHhhhhc----CCCCCCcchHHHHHHHHHH-Hhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670 39 TL-LPTFLSCILST----NSSDKPGVRKECIHVIATL-SNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 39 e~-lp~fLs~L~e~----~ss~kp~~RKaaI~lLGvl-ae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
.+ +..|.+.+.+- .-..+|..+.+|.++||-+ |-.. |+..|||-++.++.+ -|++.||.=|+-|+|-|+-
T Consensus 914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimek---sp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEK---SPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc---CCCceeeecchheccchhh
Confidence 44 44444444333 2445688899999999987 3333 777788877777654 4889999888888888776
Q ss_pred hhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcchhH--------------HHHHHHHHHHhcCC
Q 007670 112 RVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKL--------------GRMEVRLERLLKSE 174 (594)
Q Consensus 112 ~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--------------~~L~~RL~klL~s~ 174 (594)
.. + .++.|-.+.|. ++.++.|+..|.+-|.-+|=+--=.+.+|+ ..|...+++=|++.
T Consensus 991 ~f--p---nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 991 RF--P---NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred hc--c---cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 55 2 24444444442 678888888888888877765211123344 34444556666555
Q ss_pred chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCc
Q 007670 175 VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQD 215 (594)
Q Consensus 175 ~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seD 215 (594)
+-..-..+=.-|+-+..-+=++.+| ..+|..|..++..++
T Consensus 1066 ~n~iynlLPdil~~Ls~~~l~~~~~-~~vm~~li~~ikkde 1105 (1251)
T KOG0414|consen 1066 GNTIYNLLPDILSRLSNGNLEEESY-KTVMEFLIGLIKKDE 1105 (1251)
T ss_pred ccchhhhchHHHHhhccCcccchhh-HHHHHHHHHHhcccc
Confidence 4333333333444333222112354 788999998888664
No 190
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=78.99 E-value=6.6 Score=45.98 Aligned_cols=192 Identities=16% Similarity=0.270 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-cccc--chHHHHHHHHhhhcCCCh
Q 007670 21 TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP--YITKIINSITRNFRDKNS 96 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isp--hLpkIL~~IvrrLkD~Ds 96 (594)
-.+-.+.-|=.+++.|+.+. -..|+++|..-+.+++-..| ++||-.+=..- .+.+ .-.+|+|++..++.|.+.
T Consensus 307 a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR---~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~ 383 (690)
T KOG1243|consen 307 AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIR---LLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNA 383 (690)
T ss_pred cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHH---HHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCH
Confidence 34445555556666665444 44456666666666666666 33333332222 3332 356899999999999999
Q ss_pred hHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH------HHHHHHHHH
Q 007670 97 ALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL------GRMEVRLER 169 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL------~~L~~RL~k 169 (594)
.+|.-++.++..|+..+....... +++=+...= .++...+-.---.||-++ .+|+ +-|.-++.+
T Consensus 384 ~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q-~d~~~~irtntticlgki--------~~~l~~~~R~~vL~~aftr 454 (690)
T KOG1243|consen 384 TLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQ-PDEHGGIRTNTTICLGKI--------APHLAASVRKRVLASAFTR 454 (690)
T ss_pred HHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhC-ccccCcccccceeeeccc--------ccccchhhhccccchhhhh
Confidence 999999999999999985432111 333222221 222222222222333222 2333 224556777
Q ss_pred HhcCCchhhHHHHHHHHHHHHhcCcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHH
Q 007670 170 LLKSEVFKAKAAGLVVVGSVIGSGAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALW 227 (594)
Q Consensus 170 lL~s~~fkaK~alL~aIGSiA~a~~~~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg 227 (594)
.|+.+-..+|.+.+-++.+ ...-+. -....++|.|.....+++=.+|..|-.++-
T Consensus 455 alkdpf~paR~a~v~~l~a---t~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 455 ALKDPFVPARKAGVLALAA---TQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred hhcCCCCCchhhhhHHHhh---cccccchhhhhhhccccccccccCcccchhhHHHHHHH
Confidence 8888877777665544442 122221 334556777777777778777777665543
No 191
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=78.96 E-value=4.5 Score=38.74 Aligned_cols=147 Identities=18% Similarity=0.149 Sum_probs=87.1
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~ 158 (594)
++.-|+.++..+ .....||..+.-++.++- ...+..+.-.+...+..++.+.+..-...|+.+|.++....++...+
T Consensus 4 ~l~~lL~~L~~~--~~~~~~r~~a~v~l~k~l-~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDML--RQPEEVRSHALVILSKLL-DAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCT--TTSCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhccc--CCCHhHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 445555555541 245578888888888882 22222344477777777775544445567888888888775544333
Q ss_pred hH--HHHHHHHHHHhc--CCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-CCcHH-HHHHHHHHHHH
Q 007670 159 KL--GRMEVRLERLLK--SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-SQDWA-ARKAAAEALWR 228 (594)
Q Consensus 159 yL--~~L~~RL~klL~--s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-seDw~-lRKaAaDaLg~ 228 (594)
.+ ..+++-+..+.. .++-....+++.+|.+...-..--.......++.|.+.+. +++-. +|-.|+-.|.+
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 22 225555666666 6677788889999886432211112334555678888885 34333 67777776654
No 192
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.90 E-value=6.4 Score=36.68 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=52.6
Q ss_pred HHHHHHHhhh-cCCChhHHHHHHHHHHhhchhhhcchhHH---hHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670 82 KIINSITRNF-RDKNSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (594)
Q Consensus 82 kIL~~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~---~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE 150 (594)
+++-.+++.| ...|+.+-..||.=+|.|+.++...-... =.|..+..|+++.|+.|+--|..|+.+++-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4666666777 33478889999999999999996543221 478888888889999999999999998863
No 193
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=78.40 E-value=32 Score=40.38 Aligned_cols=143 Identities=14% Similarity=0.080 Sum_probs=95.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhc-------C-CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--c
Q 007670 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATV-------D-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N 75 (594)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~eLD~LA~~L-------p-pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~ 75 (594)
..-++.++..+.|-|-.+.|+-.+..+++.+ . .+...++++.+. .|...+.+.++-++-.++-.+ .
T Consensus 378 t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~----dp~~~i~~~~lgai~NlVmefs~~ 453 (678)
T KOG1293|consen 378 TESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM----DPEIMIMGITLGAICNLVMEFSNL 453 (678)
T ss_pred HHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh----CcchhHHHHHHHHHHHHHhhcccH
Confidence 3455677788889998888877777766653 2 233777777772 344555565554544444444 2
Q ss_pred cccchH-HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc----hhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670 76 LSPYIT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----AFVTMLKLLSDALFTEQDTNAQVGAALCLAATID 150 (594)
Q Consensus 76 isphLp-kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~----~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE 150 (594)
-..+|. ..+-.+..-+.|+|+.+|.-++++|-.+.-..-+. +..-+-..++.-+.++++..||..++.-|-.++.
T Consensus 454 kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 454 KSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 222222 24557888999999999999999999887655321 2222566666666689999999998887777766
Q ss_pred hc
Q 007670 151 AA 152 (594)
Q Consensus 151 ~l 152 (594)
+.
T Consensus 534 ~~ 535 (678)
T KOG1293|consen 534 NS 535 (678)
T ss_pred Cc
Confidence 53
No 194
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.94 E-value=1.7e+02 Score=35.32 Aligned_cols=180 Identities=14% Similarity=0.159 Sum_probs=107.0
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~ 116 (594)
|-.++..+...-..+-.+-| .+..++..++.. .=-..+..++-+|.|+..-+|-.||-=||--++.+......-
T Consensus 42 flr~vn~il~vkKresi~dR--Il~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei 119 (892)
T KOG2025|consen 42 FLRVVNYILLVKKRESIPDR--ILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI 119 (892)
T ss_pred HHHHHHHheeeccCCCcHHH--HHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc
Confidence 44455544433332222222 344444444333 222367889999999999999999999999999999855322
Q ss_pred hh---HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHH----
Q 007670 117 AF---VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGS---- 188 (594)
Q Consensus 117 ~~---~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL-~s~~fkaK~alL~aIGS---- 188 (594)
+. ..+..-|..-| -+..|+|-+-|..||.++=+.-.++-.+.... +..++ +.|+..++.++++.|.-
T Consensus 120 dd~vfn~l~e~l~~Rl-~Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~----l~~liqnDpS~EVRRaaLsnI~vdnsT 194 (892)
T KOG2025|consen 120 DDDVFNKLNEKLLIRL-KDREPNVRIQAVLALSRLQGDPKDEECPVVNL----LKDLIQNDPSDEVRRAALSNISVDNST 194 (892)
T ss_pred CHHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHhcCCCCCcccHHHH----HHHHHhcCCcHHHHHHHHHhhccCccc
Confidence 22 22444444444 37899999999999999986444443333322 22233 45588888888877652
Q ss_pred ---HH-h---cCcCc--CCchHHH--------------HHHHHhhhcCCcHHHHHHHHHHHHH
Q 007670 189 ---VI-G---SGAVD--GSGLKGL--------------VSCLLGFLSSQDWAARKAAAEALWR 228 (594)
Q Consensus 189 ---iA-~---a~~~~--~pyf~~l--------------m~~L~e~L~seDw~lRKaAaDaLg~ 228 (594)
|. . |.++. .-| ..+ +..|.--|.+-+..+|+|+.|+|..
T Consensus 195 lp~IveRarDV~~anRrlvY-~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 195 LPCIVERARDVSGANRRLVY-ERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred chhHHHHhhhhhHHHHHHHH-HHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 00 0 00010 011 122 2333333556688999999999877
No 195
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.66 E-value=1e+02 Score=37.70 Aligned_cols=157 Identities=16% Similarity=0.242 Sum_probs=95.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhcCCC--------ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----cc
Q 007670 9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPT--------LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NL 76 (594)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe--------~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~i 76 (594)
+++.|.--..-|-.-.|.+.|--|-+-||+. .||.|+.-|.. ++ =--+=.+++-+|..+.+.| +-
T Consensus 216 Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~-Ie--yiDvAEQ~LqALE~iSR~H~~AiL~ 292 (1051)
T KOG0168|consen 216 LVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLT-IE--YIDVAEQSLQALEKISRRHPKAILQ 292 (1051)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhh-hh--hhHHHHHHHHHHHHHHhhccHHHHh
Confidence 3444444455666777777777777777643 36666666632 11 1236677888888888888 33
Q ss_pred ccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670 77 SPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (594)
Q Consensus 77 sphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~ 154 (594)
+-.|--.|.++-= -...++++|.-+.+..|..+.-.. +++=..||+.-|+..+++..-..+|.|+.+++|+.-.
T Consensus 293 AG~l~a~LsylDF----FSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 293 AGALSAVLSYLDF----FSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred cccHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 3344444444311 123566677777777777764322 3344566777777778888999999999999999743
Q ss_pred Cc--chhH--HHHHHHHHHHhc
Q 007670 155 PD--AGKL--GRMEVRLERLLK 172 (594)
Q Consensus 155 ~i--~~yL--~~L~~RL~klL~ 172 (594)
.+ .+.| +.|+.+...||.
T Consensus 369 ~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 369 GPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred ChHHHHHHhchhHHHHHHHHHh
Confidence 32 2222 336666666664
No 196
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.07 E-value=12 Score=39.48 Aligned_cols=127 Identities=15% Similarity=0.103 Sum_probs=76.6
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchH--------HHHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--------KIINSITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLp--------kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
...|+++|... +.+....+..+-+++-+.... ...+.+- ..+....+.+.-+|..+...++..++.|..
T Consensus 57 ~~~~l~lL~~~--~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 57 ASLFLNLLNKL--SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -----HHHHHH-----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 67777777765 567889999999999997776 2222221 256666778888999999999999999999
Q ss_pred hhhcchhH---HhHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHh
Q 007670 112 RVGASAFV---TMLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLL 171 (594)
Q Consensus 112 ~l~~~~~~---~~lkPL~eaL~~---eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL 171 (594)
+....... .++++++..|.. ..+.++|..|+.||+.+...-.. ...+ ...++.|..+|
T Consensus 135 ~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~--R~~f~~~~~v~~l~~iL 200 (312)
T PF03224_consen 135 QGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY--RQVFWKSNGVSPLFDIL 200 (312)
T ss_dssp STTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH--HHHHHTHHHHHHHHHHH
T ss_pred cCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh--HHHHHhcCcHHHHHHHH
Confidence 88654433 478888888843 12455778889999998764221 1111 34555566666
No 197
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=76.84 E-value=69 Score=31.90 Aligned_cols=120 Identities=17% Similarity=0.257 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh----c---CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHH-hhh
Q 007670 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAAT----V---DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLS-NSH 74 (594)
Q Consensus 3 ~~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~----L---ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvla-e~h 74 (594)
.++|--++.||+.=+ |..+..+.|-.++.+ + +-+.-+-+.+||..-. ..+| ..|+..|--|. ...
T Consensus 2 ~eikplLIsCL~~q~---~k~s~~KiL~~iVs~Va~~v~~~~~~~W~eL~d~Ils~~-~~e~---~kA~~IF~~L~~~l~ 74 (174)
T PF04510_consen 2 REIKPLLISCLTMQE---TKESDFKILRRIVSHVAYEVFDLQEGGWDELSDCILSLS-ENEP---VKAFHIFICLPMPLY 74 (174)
T ss_pred cchHHHHHHHHHhhc---ccHhHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhh-ccch---HHHHHHHHhCCchhh
Confidence 368889999999854 333344444444333 2 4445888899997643 3333 45677777765 444
Q ss_pred --ccccchHHHHHHHHhhhcCCCh-hHH--HHHHHHHHhhchhhhcchhH-HhHHHHHHHH
Q 007670 75 --NLSPYITKIINSITRNFRDKNS-ALQ--ATCISTVSSLSPRVGASAFV-TMLKLLSDAL 129 (594)
Q Consensus 75 --~isphLpkIL~~IvrrLkD~Ds-~VR--~Ac~~ALG~LAe~l~~~~~~-~~lkPL~eaL 129 (594)
++-|+|..+++-+.++|.+|.. .|. -.|..+.-+++=++.+.+.. .+++-|+..|
T Consensus 75 ~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~m 135 (174)
T PF04510_consen 75 GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSMRVDLVKELLPKM 135 (174)
T ss_pred hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 9999999999999999999964 233 33333333333344443322 2455554444
No 198
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.63 E-value=65 Score=39.17 Aligned_cols=176 Identities=11% Similarity=0.056 Sum_probs=105.3
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHh--------hcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--cc
Q 007670 8 SVNGLLNKLSDRDTYSQAAKELDSIAA--------TVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NL 76 (594)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~LA~--------~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~i 76 (594)
++|+-|.--+|.-.+--|+.||=.|.. .+|-+. +|.++..|..- .++-.--.|.|+|..||+.+ .+
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E---~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE---HNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHhhccchh
Confidence 444555444554444455555533221 245666 55555555432 24667788999999999998 22
Q ss_pred ccchH-HHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcchh----HHhHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670 77 SPYIT-KIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAF----VTMLKLLSDALFTEQDTNAQVGAALCLAATID 150 (594)
Q Consensus 77 sphLp-kIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~~~----~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE 150 (594)
+--+. --+|+++.+|.--+= -|-+.|+.||-.|+..=.+... .+.+.--++-+ .-++|..|..--+.+|.
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF----Si~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF----SIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 22221 267888888876553 4778888888777765533222 12333333433 45688877777778888
Q ss_pred hcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670 151 AAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 151 ~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA 190 (594)
.+..+...|+-.-+|-|..+|.+.+-|.-..+..++.-+|
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 8877766677777777777887666554333333444444
No 199
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.94 E-value=29 Score=41.24 Aligned_cols=160 Identities=17% Similarity=0.196 Sum_probs=93.9
Q ss_pred CCCcchHHHHH-HHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHcc
Q 007670 55 DKPGVRKECIH-VIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFT 131 (594)
Q Consensus 55 ~kp~~RKaaI~-lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~~ 131 (594)
.++..-.+|.+ +.-.+|-.. ++..|||-++.+.- +-|+|.+|.-++.+||.++-.. ..++. .---|..-| +
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~me---k~p~P~IR~NaVvglgD~~vcf--N~~~de~t~yLyrrL-~ 981 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSME---KHPIPRIRANAVVGLGDFLVCF--NTTADEHTHYLYRRL-G 981 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh---hCCCcceeccceeeccccceeh--hhhhHHHHHHHHHHh-c
Confidence 44444444444 444457777 88888887776654 3599999999999988887655 22111 233345555 6
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-----------------hcCc
Q 007670 132 EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI-----------------GSGA 194 (594)
Q Consensus 132 eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA-----------------~a~~ 194 (594)
+.+-.||..+.+-++-+|=+---.+.+|+++ +.++|..++-.++.++=-...-+| ...+
T Consensus 982 De~~~V~rtclmti~fLilagq~KVKGqlg~----ma~~L~deda~Isdmar~fft~~a~KdNt~yn~fidifs~ls~~a 1057 (1128)
T COG5098 982 DEDADVRRTCLMTIHFLILAGQLKVKGQLGK----MALLLTDEDAEISDMARHFFTQIAKKDNTMYNGFIDIFSTLSSDA 1057 (1128)
T ss_pred chhhHHHHHHHHHHHHHHHccceeeccchhh----hHhhccCCcchHHHHHHHHHHHHHhcccchhhhhHHHHHHcCchh
Confidence 7788899888888887776533334566665 456676666555544322222222 1111
Q ss_pred CcC-CchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007670 195 VDG-SGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (594)
Q Consensus 195 ~~~-pyf~~lm~~L~e~L~seDw~lRKaAaDaL 226 (594)
+.+ .-|..++.-|..|+..+-.+ |++.|-|
T Consensus 1058 e~g~e~fk~II~FLt~fI~kerh~--kql~E~L 1088 (1128)
T COG5098 1058 ENGQEPFKLIIGFLTDFISKERHQ--KQLKESL 1088 (1128)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 211 22666777777776655443 4455444
No 200
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=75.52 E-value=72 Score=30.21 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=74.3
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHH
Q 007670 8 SVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIIN 85 (594)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~ 85 (594)
++...++||++ +.....+++|..+.... ++....++..+.+.... .| .-+.+++.+|..- ....+-..++.
T Consensus 3 ~v~~~lnkLs~-~n~~~~~~~l~~~~~~~-~~~~~~l~~~i~~~~~~-~~----~~~~~ya~L~~~l~~~~~~f~~~ll~ 75 (200)
T smart00543 3 KVKGLINKLSP-SNFESIIKELLKLNNSD-KNLRKYILELIFEKAVE-EP----NFIPAYARLCALLNAKNPDFGSLLLE 75 (200)
T ss_pred HHHHHHhhCCH-HHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHc-Cc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999996 45555555555555432 33477777777665332 23 3344444443333 22222333333
Q ss_pred HHHhhhc----CCChhHHHHHHHHHHhhchhhhcchhH-----HhHHHHHHHHccCCC----hhHHHHHHHHHHHHHhhc
Q 007670 86 SITRNFR----DKNSALQATCISTVSSLSPRVGASAFV-----TMLKLLSDALFTEQD----TNAQVGAALCLAATIDAA 152 (594)
Q Consensus 86 ~IvrrLk----D~Ds~VR~Ac~~ALG~LAe~l~~~~~~-----~~lkPL~eaL~~eq~----k~vQ~~Aa~ALaavvE~l 152 (594)
.+...++ ..+..-.+.+.-.+--||+.+.-.... .++..|+..+ .+.. ...-...+..|..+...+
T Consensus 76 ~~~~~f~~~~e~~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~-~~~~~~~~~~~ve~l~~lL~~~G~~l 154 (200)
T smart00543 76 RLQEEFEKGLESEEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDL-TKLDPPRSDFSVECLLSLLPTCGKDL 154 (200)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhcc-CCCCCCCcHHHHHHHHHHHHHhhHHH
Confidence 3333332 223334444555555555544322111 1344444433 1111 122334444455555544
Q ss_pred C-CCcchhHHHHHHHHHHHhcC
Q 007670 153 Q-DPDAGKLGRMEVRLERLLKS 173 (594)
Q Consensus 153 ~-~~i~~yL~~L~~RL~klL~s 173 (594)
. ......+..++.++-..+..
T Consensus 155 ~~~~~~~~~~~~l~~l~~~~~~ 176 (200)
T smart00543 155 EREKSPKLLDEILERLQDYLLK 176 (200)
T ss_pred cCcccHHHHHHHHHHHHHHHhc
Confidence 4 33344566666666666653
No 201
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.50 E-value=1.2e+02 Score=39.96 Aligned_cols=198 Identities=18% Similarity=0.147 Sum_probs=124.3
Q ss_pred cCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhH-HHHHHHHHHhhchhh
Q 007670 36 VDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSAL-QATCISTVSSLSPRV 113 (594)
Q Consensus 36 Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~V-R~Ac~~ALG~LAe~l 113 (594)
+-|+. -..-+.++......++|-.|=++.-++|.++-..--.|++..+...++.+|++-+..| |---.-|+|++=.+.
T Consensus 868 lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv 947 (2067)
T KOG1822|consen 868 LGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV 947 (2067)
T ss_pred cCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence 34555 3344555566678899999999999999998888777899999999999999977766 556677899998888
Q ss_pred hcchhHHhHH---HHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-chhh--HHHHHH--
Q 007670 114 GASAFVTMLK---LLSDALFTEQ-DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKA--KAAGLV-- 184 (594)
Q Consensus 114 ~~~~~~~~lk---PL~eaL~~eq-~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-~fka--K~alL~-- 184 (594)
..-....-+. -++.+|..|. .|.||..+..||+-++|.......-|....+--+.++|-+. .+++ ....=-
T Consensus 948 gs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen 948 GSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred cCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence 4321111111 1344444454 56999999999999999876655556655555555665433 3332 111111
Q ss_pred ----HHHHHH-hcCcCcCCchH-HHH-----HHHHh---hhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 185 ----VVGSVI-GSGAVDGSGLK-GLV-----SCLLG---FLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 185 ----aIGSiA-~a~~~~~pyf~-~lm-----~~L~e---~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
+++.++ .+|.+.+|.+. ... .++.. .+..+|--...+|+++|.-+..+-
T Consensus 1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFa 1090 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFA 1090 (2067)
T ss_pred ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhc
Confidence 222333 33444433322 011 11222 134566666778888888888753
No 202
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=75.19 E-value=70 Score=43.02 Aligned_cols=239 Identities=17% Similarity=0.161 Sum_probs=133.0
Q ss_pred ChhHHHHHHHHHHHHHhhcC---CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhc
Q 007670 18 DRDTYSQAAKELDSIAATVD---PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR 92 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lp---pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLk 92 (594)
|-++..+|...+-.++--.. ++-+-.-..++.+-...-.-+.|-+++..+.-++.-. +.-|++++++..|...+.
T Consensus 106 ~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~ 185 (2341)
T KOG0891|consen 106 DVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALR 185 (2341)
T ss_pred ChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhcc
Confidence 56677777777766655432 2223333344444333333455677788888777777 888999999999999999
Q ss_pred CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCC-----ChhH-HHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 007670 93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ-----DTNA-QVGAALCLAATIDAAQDPDAGKLGRMEVR 166 (594)
Q Consensus 93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq-----~k~v-Q~~Aa~ALaavvE~l~~~i~~yL~~L~~R 166 (594)
|+++.+|..||.|+.....-+.+.. .....+-+.-.++.- ...+ --++......++......+ +.++..+-+
T Consensus 186 ~~~~~i~~~a~~al~~~~~~~~~~~-~~~~~~~~~rcvd~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~ 263 (2341)
T KOG0891|consen 186 DPKPAIRLQACSALHAVLSSLAQRE-AKLKPQWYQRCVDEARHGLSSDGVKIHASLLVYNELLRISDPFL-EKYDSTCVR 263 (2341)
T ss_pred CCChhhhHHHHHHHHHHHhhhhhcc-chhhhHHHHHHHHhccccccchHHHhhhHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 9999999999999998877665322 111111111110000 0000 0012222233332222211 233334443
Q ss_pred --HHHHhcCCchhhHHHHHHHHHHHHhcC-cCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhh
Q 007670 167 --LERLLKSEVFKAKAAGLVVVGSVIGSG-AVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKG 242 (594)
Q Consensus 167 --L~klL~s~~fkaK~alL~aIGSiA~a~-~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~ 242 (594)
..+++++..... .+..-++-+|..- +.| .-|+...|..+..++..++ -.|...|+.||.+++..+.||..
T Consensus 264 ~~~~~~lk~~~i~~--~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~----~~~~~~i~~ia~al~~~~~~~~~ 337 (2341)
T KOG0891|consen 264 QAKGKLLKSIVIRM--TLSQILPLLAAFNPAKFQVKYLHTEMDHLLSILRKEK----TRAFVSIGEIAVALGSSMSPYLS 337 (2341)
T ss_pred HHHHHHhccccHHH--HHHhccHHHhhhhhhhhHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHhhhhhhhhhc
Confidence 444554443332 1221222222111 223 2777777777777777555 67899999999999988888864
Q ss_pred HH---------HHHHHhcchhH---HHHHHhhcC
Q 007670 243 KC---------LKIFESKRFDK---MIEAWKQVP 264 (594)
Q Consensus 243 ~~---------m~sLEs~RfDK---~i~lWk~i~ 264 (594)
-. ++++...++|+ +.+.|-..+
T Consensus 338 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~a 371 (2341)
T KOG0891|consen 338 NILDHIRQTLPTKDLARKKFEKSVFTCIGLLASA 371 (2341)
T ss_pred chhhhhhhcchhhhHHHHhcchhHHHHHHHHhhc
Confidence 42 24555666666 444444433
No 203
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=74.64 E-value=5.5 Score=35.27 Aligned_cols=52 Identities=15% Similarity=0.379 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 007670 58 GVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLS 110 (594)
Q Consensus 58 ~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LA 110 (594)
..|-++|+.|+.++..+ -+-|+||++|..+.+...| ...|+..+-.+++.+=
T Consensus 4 ~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFk 57 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFK 57 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHH
Confidence 35778999999999998 7778999999999999998 4567777777776653
No 204
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=74.58 E-value=9.3 Score=40.37 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=45.5
Q ss_pred HHHHHHhhhcCC--ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007670 83 IINSITRNFRDK--NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAAT 148 (594)
Q Consensus 83 IL~~IvrrLkD~--Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaav 148 (594)
=+|.+.+.|.|- .+.||.=|++|||.++..- -+.-|-+.+ ++..+.|-.++..||+-.
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~-------~~~vL~e~~-~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADED-------CVEVLKEYL-GDEERVVRESCEVALDML 278 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHH-------HHHHHHHHc-CCcHHHHHHHHHHHHHHH
Confidence 377788888884 4789999999999999876 455555555 888888888888888754
No 205
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.38 E-value=63 Score=30.63 Aligned_cols=71 Identities=15% Similarity=0.129 Sum_probs=53.8
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhH-HHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKL-GRMEVRLERLLK-SEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL-~~L~~RL~klL~-s~~fkaK~alL~aIGSiA~a 192 (594)
.++-|-.-| ...++++|.-|..-|+.++.|.+.... ++- ..++.+|.+++. ..+.++|.-++.+|.+-+.+
T Consensus 42 a~ral~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 42 AMRALKKRL-LSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHH-cCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 344444444 568999999999999999999987663 332 348888999886 44778888899999987754
No 206
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.30 E-value=11 Score=40.65 Aligned_cols=88 Identities=22% Similarity=0.315 Sum_probs=62.2
Q ss_pred hhhhcCCCCCCcchHHHH-HHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh-hcch-hHHhH
Q 007670 47 CILSTNSSDKPGVRKECI-HVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV-GASA-FVTML 122 (594)
Q Consensus 47 ~L~e~~ss~kp~~RKaaI-~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l-~~~~-~~~~l 122 (594)
-|-+...++.|++||+|| .++|..+++. .+..+=...|+.|.+.++|+++ .+ -++.|++.++..- .... ...|+
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~-~~-~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP-AE-PAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc-cc-HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344566778899999999 5667777766 8888999999999999999999 44 3445666666544 1122 22377
Q ss_pred HHHHHHHccCCChh
Q 007670 123 KLLSDALFTEQDTN 136 (594)
Q Consensus 123 kPL~eaL~~eq~k~ 136 (594)
+-|+.-+.+.+.+.
T Consensus 85 k~l~~~~~~p~~~l 98 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPL 98 (353)
T ss_pred HHHHHHhcCcccch
Confidence 77777776555554
No 207
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=74.27 E-value=83 Score=35.09 Aligned_cols=194 Identities=15% Similarity=0.057 Sum_probs=113.0
Q ss_pred CcchHHHHHHHHHHHh-hh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc---chh-HHhHHHHHHH
Q 007670 57 PGVRKECIHVIATLSN-SH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAF-VTMLKLLSDA 128 (594)
Q Consensus 57 p~~RKaaI~lLGvlae-~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~---~~~-~~~lkPL~ea 128 (594)
+-.|.+++.-+.+.+. -| ++.+.--.+...+.+-++-|.+-=...+..-+|.++-.+.= ... ..-+-|++..
T Consensus 74 AktR~~~le~i~lalt~r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~~g~~~vqlg~~q~~ee~~~t~~~~~~l 153 (427)
T KOG2842|consen 74 AKTRQEALEKIYLALTSRHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAALIGLLCVQAGPGQEEEEWTKTLGPFLAL 153 (427)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhccCcchhhHHHhccchHHHH
Confidence 4579999998888644 33 77788778888889999999987766666677777777731 111 1134455555
Q ss_pred HccCCChhHHH--HHHHHHHHHHhhcCCCc-chhHHHHHHH-----HHHHhcCCchh-----hHHHHHHHHHHHH---hc
Q 007670 129 LFTEQDTNAQV--GAALCLAATIDAAQDPD-AGKLGRMEVR-----LERLLKSEVFK-----AKAAGLVVVGSVI---GS 192 (594)
Q Consensus 129 L~~eq~k~vQ~--~Aa~ALaavvE~l~~~i-~~yL~~L~~R-----L~klL~s~~fk-----aK~alL~aIGSiA---~a 192 (594)
+..++++.++. .+|.||+..+=.+...+ .-+.--+|-+ .. ++.....- +-..++.|+.+=+ ..
T Consensus 154 i~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~a~~Lti 232 (427)
T KOG2842|consen 154 ILDDESASIKARSICATSLGTACLIAEADIIELGSFLICLEESFGAVY-LEDDETVVVCACQNLGLLLTCLTAWSLLLTI 232 (427)
T ss_pred HhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh-cccCCCccccccchhHHHHHHHHHHHHHHHc
Confidence 55667777664 66667766655544333 2232222222 22 33333111 1111222222100 00
Q ss_pred CcCc-CCchHH-HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C-CccchhhhHHHHHHHhc
Q 007670 193 GAVD-GSGLKG-LVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K-DAVPEFKGKCLKIFESK 251 (594)
Q Consensus 193 ~~~~-~pyf~~-lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~---g-d~f~py~~~~m~sLEs~ 251 (594)
..+. ..+... ..|.|..+|..+.-..|.+|.|++..++... . +.+-|-.++++..|+..
T Consensus 233 ~~~~~~~~~~~~~~p~i~~lLs~~~vn~r~aa~et~a~l~e~~q~~~~~f~~~d~e~l~~~lr~l 297 (427)
T KOG2842|consen 233 CPEALSEQLDAALAPKLPLLLSSERVNERIAAGETLALLFELAQDSEFDFIYPDMEQLLSTLRDL 297 (427)
T ss_pred CccchhhHHHHHhccchHHHhccchhhhhhhhhhhHHHHHHHHhcccccccCCCHHHHHHHHHHH
Confidence 1111 111111 3477888899999999999999998888863 2 46666677777777644
No 208
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.81 E-value=18 Score=42.78 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=67.6
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
+..+..+|.....+..|++||.+..+.+-+=..+.-.-+=.-++..+...+.|+++.|-..|+-||.-+.+.-.+.....
T Consensus 119 ~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~ 198 (734)
T KOG1061|consen 119 TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLE 198 (734)
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccc
Confidence 55566667777778899999998887777633331111223344455555569999988888877777776654322112
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD 156 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i 156 (594)
+.++++..|+..-+...+-+-+..|+...+..+.+.
T Consensus 199 l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 199 LNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 334444443322244444455666666666555443
No 209
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=73.60 E-value=94 Score=35.34 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhhcCCCC-hHHHHHhhh--h-cCCCCCCcch-HHHHHHHHHHHhhhccccchHHHHHHHHhhhcCC-
Q 007670 21 TYSQAAKELDSIAATVDPTL-LPTFLSCIL--S-TNSSDKPGVR-KECIHVIATLSNSHNLSPYITKIINSITRNFRDK- 94 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~--e-~~ss~kp~~R-KaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~- 94 (594)
-...|-..|+++.-.+.-.. +..++.... . .-.+.-++++ .--.+.|+.|+....-+...+.++.++..+|..+
T Consensus 253 V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~ 332 (501)
T PF13001_consen 253 VSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDN 332 (501)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCc
Confidence 34566677777776664434 656666655 2 1112223333 3347899999998766667799999999999998
Q ss_pred -ChhHHHHHHHHH---HhhchhhhcchhHHhHHHHHHHH-c---c--------CCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670 95 -NSALQATCISTV---SSLSPRVGASAFVTMLKLLSDAL-F---T--------EQDTNAQVGAALCLAATIDAAQDPDAG 158 (594)
Q Consensus 95 -Ds~VR~Ac~~AL---G~LAe~l~~~~~~~~lkPL~eaL-~---~--------eq~k~vQ~~Aa~ALaavvE~l~~~i~~ 158 (594)
.+.+|..+..-+ .....++.... ...+.|.+..= . + ..+......|.-||..+....+.....
T Consensus 333 ~~~klk~~~l~F~~~~~~~~~~~~~~~-l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~ 411 (501)
T PF13001_consen 333 TNSKLKSLALQFIRGSSWIFKHISPQI-LKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK 411 (501)
T ss_pred cccccchhcchhhhcchHHhhhcCHHH-HHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccc
Confidence 678888887766 55554442111 11222222211 0 1 113334456777777777776544311
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 159 yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~ 195 (594)
- -.++..|+..|..+...++.++-+|+++++.+=..
T Consensus 412 d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~ 447 (501)
T PF13001_consen 412 D-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKD 447 (501)
T ss_pred c-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhc
Confidence 1 23556666777778888888999999998866433
No 210
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.66 E-value=55 Score=36.09 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=96.2
Q ss_pred CChhHHHHHHHHHHHHH------hhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----cccc-chHHH
Q 007670 17 SDRDTYSQAAKELDSIA------ATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSP-YITKI 83 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA------~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isp-hLpkI 83 (594)
-|.|....+...|..|| +.+.... +..++.||.+...+..-..-|.|+.+|-.||..- ++.. -+++|
T Consensus 254 ~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 254 IDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKI 333 (461)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHH
Confidence 36775555555555544 4554445 9999999998655544345588999999886544 4433 38888
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH---H-hHHHHHHHHc-cCCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFV---T-MLKLLSDALF-TEQDTNAQVGAALCLAATIDAAQDPDAG 158 (594)
Q Consensus 84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~-~lkPL~eaL~-~eq~k~vQ~~Aa~ALaavvE~l~~~i~~ 158 (594)
+....+-+.| +.|-++.+-++..|+-...+..-. . .-.-.++||- +.+...+|.-||..+-.++-..-..-.+
T Consensus 334 i~l~~~h~~~--p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~ 411 (461)
T KOG4199|consen 334 ITLALRHSDD--PLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTI 411 (461)
T ss_pred HHHHHHcCCC--hHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 8888888744 455555555555555444332211 0 2233445553 3457889999999988887665444445
Q ss_pred hHHHHHHHHHHHhcCCc
Q 007670 159 KLGRMEVRLERLLKSEV 175 (594)
Q Consensus 159 yL~~L~~RL~klL~s~~ 175 (594)
.|..=.+.|+..-+..+
T Consensus 412 ~l~~GiE~Li~~A~~~h 428 (461)
T KOG4199|consen 412 LLANGIEKLIRTAKANH 428 (461)
T ss_pred HHhccHHHHHHHHHhcC
Confidence 55554555555444343
No 211
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=72.42 E-value=75 Score=34.52 Aligned_cols=174 Identities=13% Similarity=0.109 Sum_probs=97.6
Q ss_pred CCCCCCcchHHHHHHHHHHHhhh----------ccccchHHHHHHHHhhhcCCChhH------HHHHHHHHHhhchhhhc
Q 007670 52 NSSDKPGVRKECIHVIATLSNSH----------NLSPYITKIINSITRNFRDKNSAL------QATCISTVSSLSPRVGA 115 (594)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvlae~h----------~isphLpkIL~~IvrrLkD~Ds~V------R~Ac~~ALG~LAe~l~~ 115 (594)
+..-+-..||.+...++.+-+.. ++..|.|.|+..++++-.+||..+ |+.+.. -.+|..+..
T Consensus 85 L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~--e~l~~~iL~ 162 (335)
T PF08569_consen 85 LPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKH--ESLAKIILY 162 (335)
T ss_dssp GGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTS--HHHHHHHHT
T ss_pred hhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhh--HHHHHHHhC
Confidence 34456679999999999983332 555677999999999999999643 322211 112222221
Q ss_pred chhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH----HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670 116 SAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL----GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 116 ~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL----~~L~~RL~klL~s~~fkaK~alL~aIGSiA~ 191 (594)
.+ .+.-+|+.+ ...+=.+..-|+.-+..+.-.=.....+|| ......+.+||.+++|-+|...|-++|-+.-
T Consensus 163 ~~---~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~elll 238 (335)
T PF08569_consen 163 SE---CFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLL 238 (335)
T ss_dssp SG---GGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHH
T ss_pred cH---HHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHH
Confidence 11 444566665 334444444444444433332111123444 4566788899999999999999999998873
Q ss_pred cC--cCc-CCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 192 SG--AVD-GSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 192 a~--~~~-~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
-- -.. .-|+. .-+..+...|.+..-.+|--|-...-....
T Consensus 239 dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 239 DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 22 111 12222 234445555666666666666666665554
No 212
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=71.86 E-value=28 Score=33.21 Aligned_cols=72 Identities=19% Similarity=0.122 Sum_probs=55.4
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhcC
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s-~~fkaK~alL~aIGSiA~a~ 193 (594)
.++-|-.-| ...++++|.-|..-|+++++|.+......+ ...+..|.++++. .+..+|.-++.+|..-+.+-
T Consensus 38 a~ral~KRl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRL-NHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 344444445 568999999999999999999998764332 3378889999988 48888999999999877543
No 213
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=71.80 E-value=5.7 Score=27.14 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL 129 (594)
||.+|.++||.+.+.- .+.+|+++|
T Consensus 1 VR~~Aa~aLg~igd~~-------ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR-------AIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHH-------HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH-------HHHHHHHHh
Confidence 7999999999999855 677887776
No 214
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=71.79 E-value=4.8 Score=28.54 Aligned_cols=29 Identities=10% Similarity=0.183 Sum_probs=23.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670 83 IINSITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
.++.+++.|+.++..|+..++++|+.|+.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 46667777778889999999999988863
No 215
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=71.47 E-value=47 Score=39.88 Aligned_cols=217 Identities=17% Similarity=0.190 Sum_probs=123.3
Q ss_pred hHHHHHHHHHHHHHhhc-----CCCChHHHHHhhhhc--CCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhh
Q 007670 20 DTYSQAAKELDSIAATV-----DPTLLPTFLSCILST--NSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRN 90 (594)
Q Consensus 20 DT~r~A~~eLD~LA~~L-----ppe~lp~fLs~L~e~--~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Ivrr 90 (594)
|...+++--++.+++-. .+..+|.+|.+..+. ..+.+-.+|.-+--+|-..+..- .+-|++++|+.-|--.
T Consensus 505 ~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdl 584 (980)
T KOG2021|consen 505 DHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDL 584 (980)
T ss_pred CchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777776632 344599988888665 66777889988888888887776 7788999999988888
Q ss_pred hcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH---ccCCChhHHHHHHHHHHHHHhhcCCCcch-hHHHHHHH
Q 007670 91 FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL---FTEQDTNAQVGAALCLAATIDAAQDPDAG-KLGRMEVR 166 (594)
Q Consensus 91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL---~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~-yL~~L~~R 166 (594)
|..+-+..- |..+-+..+-+.+ + +||+. ++-.+-.....|+|| .. .+.| .+..+...
T Consensus 585 L~~~vtt~N-~~s~~lt~fddql-------y---IfEtiGviI~l~n~paE~qaay~-----~~---litpl~~~~~igl 645 (980)
T KOG2021|consen 585 LHIKVTTIN-AQSDNLTIFDDQL-------Y---IFETIGVIITLNNSPAELQAAYA-----NT---LITPLILDQIIGL 645 (980)
T ss_pred HcCcCCCcC-ccccccccccccc-------e---eeecceEEEeCCCCCHHHHHHHH-----hc---ccChHHHHHHHHH
Confidence 854433322 1111111111111 1 22222 122232233334442 11 1111 22333333
Q ss_pred HHHHhcCC-chhhHHH----HHHHHHHHHhc---CcCc------CCchHHHHHHHHhhhc--CCcHHHHHHHHHHHHHHH
Q 007670 167 LERLLKSE-VFKAKAA----GLVVVGSVIGS---GAVD------GSGLKGLVSCLLGFLS--SQDWAARKAAAEALWRLA 230 (594)
Q Consensus 167 L~klL~s~-~fkaK~a----lL~aIGSiA~a---~~~~------~pyf~~lm~~L~e~L~--seDw~lRKaAaDaLg~IA 230 (594)
+...|.++ .+.++-+ ++-|||+.+.. .+.. +-.|..++..+...|. ..--.+|.+.--++++|-
T Consensus 646 ~~a~lasde~~pv~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI 725 (980)
T KOG2021|consen 646 LFAQLASDEASPVVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMI 725 (980)
T ss_pred HHHHHhccccccHHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 33334333 5555544 55578887743 2211 1223333333333332 223467999999999999
Q ss_pred HHcCCccchhhhHHHH-HHHhcchhH
Q 007670 231 VVEKDAVPEFKGKCLK-IFESKRFDK 255 (594)
Q Consensus 231 ~a~gd~f~py~~~~m~-sLEs~RfDK 255 (594)
-.+|+.+-||....+. .|.+|-.-.
T Consensus 726 ~~lg~~vlPfipklie~lL~s~d~kE 751 (980)
T KOG2021|consen 726 PILGNKVLPFIPKLIELLLSSTDLKE 751 (980)
T ss_pred HhcchhhhcchHHHHHHHHhcCCHHH
Confidence 9999999999988884 677776655
No 216
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=71.16 E-value=6.5 Score=35.18 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=36.1
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHhcCC
Q 007670 131 TEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLLKSE 174 (594)
Q Consensus 131 ~eq~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~klL~s~ 174 (594)
.+-.+.+|.-|..-|+-++|..++. +..+..++++-++.+|...
T Consensus 21 THi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 21 THISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 4567778888888888888888887 5678899999999999766
No 217
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=70.79 E-value=84 Score=29.14 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=59.7
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhHH-HHHHHHHHHhcC---CchhhHHHHHHHHHHHHhcCcC
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLG-RMEVRLERLLKS---EVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL~-~L~~RL~klL~s---~~fkaK~alL~aIGSiA~a~~~ 195 (594)
.++-|-.-| ...++++|.-|..-|+.++.|.++... ++-. +-+..|.+++.. .+..+|.-++..|..-+.+-+.
T Consensus 38 a~raL~krl-~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKI-KYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 555555566 567999999999999999999988663 3332 355559999975 3677888899999987765433
Q ss_pred c---CCchHHHHHH
Q 007670 196 D---GSGLKGLVSC 206 (594)
Q Consensus 196 ~---~pyf~~lm~~ 206 (594)
. .|++..+-..
T Consensus 117 ~~~~~~~~~~~y~~ 130 (133)
T cd03561 117 HSEDLPGIEDAYKL 130 (133)
T ss_pred CCccchHHHHHHHH
Confidence 2 3555444433
No 218
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.46 E-value=7.9 Score=29.38 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=29.5
Q ss_pred HHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007670 185 VVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (594)
Q Consensus 185 aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaL 226 (594)
+|+.++..-....- -+.++..+...|.+++..+|++|.|+|
T Consensus 2 ~l~~iv~~dp~ll~-~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 2 ALSSIVEKDPTLLD-SSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred hHHHHHhcCccccc-hHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 34555544433332 247789999999999999999999875
No 219
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=70.37 E-value=1.6e+02 Score=32.12 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=96.8
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCC
Q 007670 17 SDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKN 95 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~D 95 (594)
++.+.+..|...+..++..|+|++ +...+.-+.+..-.++ ..-..-..-|..+...---.++.++||+.++..|.++-
T Consensus 187 ~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~ 265 (372)
T PF12231_consen 187 SAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR 265 (372)
T ss_pred cchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch
Confidence 356677778888888999998877 5555554444322233 34444444455554443334588999999999996543
Q ss_pred hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc---chhHHHHHHHHHHHhc
Q 007670 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD---AGKLGRMEVRLERLLK 172 (594)
Q Consensus 96 s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i---~~yL~~L~~RL~klL~ 172 (594)
.+.-..+.+|+ +..-..+ ...++.++..|..|=..+|....... ...+..|+..+...++
T Consensus 266 -------~~~w~~~n~wL---------~v~e~cF-n~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~ 328 (372)
T PF12231_consen 266 -------LDSWEHLNEWL---------KVPEKCF-NSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLR 328 (372)
T ss_pred -------hhccHhHhHHH---------HHHHHHh-cCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhC
Confidence 22222222333 3222233 67899999999999999999765444 2356667777777776
Q ss_pred CC-ch----hhHHHHHHHHHHHH
Q 007670 173 SE-VF----KAKAAGLVVVGSVI 190 (594)
Q Consensus 173 s~-~f----kaK~alL~aIGSiA 190 (594)
.. .. .++.+++..++.+.
T Consensus 329 ~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 329 REKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred ccccccccHHHHHHHHHHHhchH
Confidence 55 22 34556666666554
No 220
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=70.22 E-value=51 Score=44.21 Aligned_cols=229 Identities=18% Similarity=0.196 Sum_probs=128.3
Q ss_pred HhhcCCC-hhHHHHHHHHHHHHHhhcCCCChHHHHHh-hhhcCCCCCCcchHHHHHHHHHHHhh---h-ccccchHHHHH
Q 007670 12 LLNKLSD-RDTYSQAAKELDSIAATVDPTLLPTFLSC-ILSTNSSDKPGVRKECIHVIATLSNS---H-NLSPYITKIIN 85 (594)
Q Consensus 12 ~L~KLsD-rDT~r~A~~eLD~LA~~Lppe~lp~fLs~-L~e~~ss~kp~~RKaaI~lLGvlae~---h-~isphLpkIL~ 85 (594)
.+-|.++ .+....|.+.|..+-...-. .+-|+.+ +..+....++-.||.+.+..-.+... + -.+|+.-+.+.
T Consensus 450 ~~~~~~~~~~~~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~ 527 (2341)
T KOG0891|consen 450 ILQKTGDSTDDIQLAFKTLGGFKFSGYS--LTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVK 527 (2341)
T ss_pred hhhhcccccHHHHHHHHHHhhhhhhhhh--HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHH
Confidence 3444443 23466678888777665322 3444444 56677788899999995554444221 2 45555444444
Q ss_pred HHHh-----hhcCCChhHHHHHHHHHH-hhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670 86 SITR-----NFRDKNSALQATCISTVS-SLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (594)
Q Consensus 86 ~Ivr-----rLkD~Ds~VR~Ac~~ALG-~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y 159 (594)
.+.. .+-|+|+.+|-+....+. .+-.+++ ++ ..++-+|.+| ++..-..|..+-..+-++.+..+.-.+++
T Consensus 528 ~vl~~ll~~aia~~~~~i~~~v~~~l~~~~~~~la-Q~--~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~ 603 (2341)
T KOG0891|consen 528 EVLSALLTVAIADTDPDIRIRVLSSLNERFDAQLA-QP--DLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPS 603 (2341)
T ss_pred HHHHHHHHHhccCCCcchhhhHHhhhccchhhhhc-Cc--hhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHH
Confidence 4433 567899999999888887 1111111 12 2444566776 33444455444444443333322223444
Q ss_pred HHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCcc
Q 007670 160 LGRMEVRLERLLK-SEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (594)
Q Consensus 160 L~~L~~RL~klL~-s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f 237 (594)
+.+.+..+..-|+ +.--..|+....-..-++..... ..||...++..+..-+.+.+=-+=+++..+++-|+...|+..
T Consensus 604 lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~ 683 (2341)
T KOG0891|consen 604 LRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM 683 (2341)
T ss_pred HHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh
Confidence 5443333332222 22223333322222222222222 248888888888888887777777899999999999999766
Q ss_pred chhhhHHHH
Q 007670 238 PEFKGKCLK 246 (594)
Q Consensus 238 ~py~~~~m~ 246 (594)
..++.+|+.
T Consensus 684 ~~~~~~~~~ 692 (2341)
T KOG0891|consen 684 VKWVDELFS 692 (2341)
T ss_pred hhccchHHH
Confidence 666555554
No 221
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=70.22 E-value=5.9 Score=28.08 Aligned_cols=28 Identities=36% Similarity=0.287 Sum_probs=23.5
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 203 LVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 203 lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
.++.|.++|.+++..+++.|+.+|+-|+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 4677777777889999999999998876
No 222
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=69.82 E-value=64 Score=34.93 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=87.1
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch---
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA--- 117 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--- 117 (594)
+..|+.-|.++..+.+...|++++..|..=...|-+-||+-..+.--++.=-+.+ -+-+..+-+++.-+...+
T Consensus 176 lq~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl~~LlPyf~~fI~~~v~~n~~~n----l~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 176 LQLYFEEITEALVGSNEEKRREALQSLRTDPGLQQLLPYFVRFIAEGVTVNLDQN----LALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhccCCCchhhhhHHHHHHHHHHHhhhccc----HHHHHHHHHHHHHHhcCCCCc
Confidence 5556666666666667777888776665544444333443333332222211112 223445555666665543
Q ss_pred ----hHHhHHHHHHHHccCC---C------hhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHH
Q 007670 118 ----FVTMLKLLSDALFTEQ---D------TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLV 184 (594)
Q Consensus 118 ----~~~~lkPL~eaL~~eq---~------k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~ 184 (594)
...++++++..|++.+ . =....-||..|+.++......-....+.++.-+.+.|-.+.... ...+|
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~-~~~YG 330 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPL-TTHYG 330 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCc-chhhH
Confidence 2237778777775321 1 13456899999999998877666677888888888887664332 34777
Q ss_pred HHHHHHhcC
Q 007670 185 VVGSVIGSG 193 (594)
Q Consensus 185 aIGSiA~a~ 193 (594)
||..+..-|
T Consensus 331 Ai~GL~~lG 339 (343)
T cd08050 331 AIVGLSALG 339 (343)
T ss_pred HHHHHHHhC
Confidence 777666544
No 223
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=69.77 E-value=45 Score=31.09 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=53.1
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch-hH-HHHHHHHHHHhcCC-chh-hHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG-KL-GRMEVRLERLLKSE-VFK-AKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~-yL-~~L~~RL~klL~s~-~fk-aK~alL~aIGSiA~a 192 (594)
.++-|-.-| ...++++|.-|..-|+.++.|.+..... +- .+.+.+|.++++.+ +.. +|.-++.+|..-+.+
T Consensus 38 a~r~l~krl-~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 38 AVRLLKKRL-NNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 344444455 5689999999999999999999887643 33 33888999999876 333 788888888877754
No 224
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.71 E-value=44 Score=40.19 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=98.3
Q ss_pred hHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC-CChhHHHHHHHHHHHHHhhc--CC-
Q 007670 80 ITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE-QDTNAQVGAALCLAATIDAA--QD- 154 (594)
Q Consensus 80 LpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e-q~k~vQ~~Aa~ALaavvE~l--~~- 154 (594)
-..-++.+|.|+.-..- .=|++|+.+|-.||..+-......=++||+..|..+ .|+..- -++|+.++--. ++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~i---k~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEII---KYALDTLLILTSHDDS 96 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHH---HHHHHHHHHHHhcCcc
Confidence 34456677777744432 349999999999999995444445899999999644 355443 34444443221 11
Q ss_pred -----Ccc------hhH-------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc-C---cCCchHHHHHHHHhhhc
Q 007670 155 -----PDA------GKL-------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-V---DGSGLKGLVSCLLGFLS 212 (594)
Q Consensus 155 -----~i~------~yL-------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~---~~pyf~~lm~~L~e~L~ 212 (594)
... ..+ +..+.-++..+...+|+++-..+.+|.++...-+ + ....++.-|..|.+-|.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~ 176 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR 176 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh
Confidence 100 112 2355568888899999999999999999885432 2 23445666777888887
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 007670 213 SQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 213 seDw~lRKaAaDaLg~IA~ 231 (594)
+.--..|..|+-.|..+..
T Consensus 177 DsrE~IRNe~iLlL~eL~k 195 (970)
T KOG0946|consen 177 DSREPIRNEAILLLSELVK 195 (970)
T ss_pred hhhhhhchhHHHHHHHHHc
Confidence 7777778777777777665
No 225
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=68.68 E-value=9.5 Score=27.93 Aligned_cols=28 Identities=36% Similarity=0.252 Sum_probs=15.8
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 203 LVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 203 lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
.||.|..+|.+++-.+|+.|+-+|+.|+
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3555555555555555555555555554
No 226
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=68.46 E-value=42 Score=39.22 Aligned_cols=154 Identities=17% Similarity=0.135 Sum_probs=103.8
Q ss_pred HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHH
Q 007670 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEV 165 (594)
Q Consensus 86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~ 165 (594)
.|.+.|-|-||.+|-+-++++|.----. ....+++-|+-.-..+.|-.|..+|..||--+|= +| +.+++
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GT---gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~--~D------~~~lv 588 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGT---GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCC--DD------RDLLV 588 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcC---CcchhHhhhheeecccCchHHHHHHHHheeeeEe--cC------cchhh
Confidence 6778899999999999888876421111 1112555555553467777788888777755442 22 24667
Q ss_pred HHHHHhcCC-chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHH
Q 007670 166 RLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (594)
Q Consensus 166 RL~klL~s~-~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~ 244 (594)
+++++|... +|+++.+..-++|- |.++.. ....+..|...+.+..=-+|.+|+-+++-|..-.-+.+-|-...+
T Consensus 589 ~tvelLs~shN~hVR~g~AvaLGi-acag~G----~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I 663 (926)
T COG5116 589 GTVELLSESHNFHVRAGVAVALGI-ACAGTG----DKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRI 663 (926)
T ss_pred HHHHHhhhccchhhhhhhHHHhhh-hhcCCc----cHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHH
Confidence 788888655 88999887777773 444422 122233333333344556799999999999988888888888999
Q ss_pred HHHHHhcchhH
Q 007670 245 LKIFESKRFDK 255 (594)
Q Consensus 245 m~sLEs~RfDK 255 (594)
++-|+..=-||
T Consensus 664 ~k~f~~vI~~K 674 (926)
T COG5116 664 IKKFNRVIVDK 674 (926)
T ss_pred HHHHHHHHhhh
Confidence 99888877777
No 227
>PRK14707 hypothetical protein; Provisional
Probab=68.14 E-value=4.4e+02 Score=35.83 Aligned_cols=135 Identities=17% Similarity=0.138 Sum_probs=89.9
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHH-------HhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhcccc--
Q 007670 8 SVNGLLNKLSDRDTYSQAAKELDSI-------AATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP-- 78 (594)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~L-------A~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isp-- 78 (594)
.++..|.|=.|.+.++.|+..|... ...|...+|+.+++.|. |++.+.+|..++..|+.-..-.+
T Consensus 545 ~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLS------KWP~~~aC~~Aa~~LA~~l~~~~~l 618 (2710)
T PRK14707 545 NTLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALS------KWPDTAVCAEAVNALAERLVDEPDL 618 (2710)
T ss_pred HHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhc------cCCCcHHHHHHHHHHHHHhccChhh
Confidence 3566778888889888888777664 23456666888888776 66667777777777766552233
Q ss_pred ---chHHHHHHHHhhh-cCCChhHHHHHHHHHHhhchhhhcch-----hHH-hHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007670 79 ---YITKIINSITRNF-RDKNSALQATCISTVSSLSPRVGASA-----FVT-MLKLLSDALFTEQDTNAQVGAALCLAAT 148 (594)
Q Consensus 79 ---hLpkIL~~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~l~~~~-----~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaav 148 (594)
+-++=|..++..| |=|+. .+|..+...|+.++.... +.. =+-.++.+|..=.+..+-..|+.+|+..
T Consensus 619 r~~l~~q~lan~lNALSKWP~s---~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~r 695 (2710)
T PRK14707 619 RKELDPVDVTNVLNALSKWPGT---EVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCAAAAGGMAER 695 (2710)
T ss_pred hhhccHHHHHHHHhhhhcCCCc---hHHHHHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCchHHHHHHHHHHHH
Confidence 3344555555555 33555 588999999999875432 222 5777888885335666666778888776
Q ss_pred Hhh
Q 007670 149 IDA 151 (594)
Q Consensus 149 vE~ 151 (594)
+..
T Consensus 696 La~ 698 (2710)
T PRK14707 696 LAA 698 (2710)
T ss_pred Hhc
Confidence 665
No 228
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=68.01 E-value=60 Score=38.13 Aligned_cols=73 Identities=14% Similarity=0.273 Sum_probs=39.0
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-cccc-chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP-YITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isp-hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
+.+++-.|.-...+.+--+|+-++-.|++++..- -|.. .-.-++--+.+|+-|-++.||.-|+.+|..+-+.-
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 4555555555555555666666666666664333 1111 12223334556666666666666666666555443
No 229
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=67.84 E-value=62 Score=38.28 Aligned_cols=127 Identities=13% Similarity=0.157 Sum_probs=86.8
Q ss_pred HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670 32 IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 32 LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
+-.++..+.=+.|++.|.+|.-+.. ...++.+|+. +-.||=..++..|..-+..+. -| ..+|.-|+.
T Consensus 28 ~~~~~~~~~~~~l~~~l~~y~~~t~------s~~~~~il~~--~~~P~~K~~~~~l~~~~~~~~--~R---l~~L~Ll~~ 94 (668)
T PF04388_consen 28 LQELLNSDREPWLVNGLVDYYLSTN------SQRALEILVG--VQEPHDKHLFDKLNDYFVKPS--YR---LQALTLLGH 94 (668)
T ss_pred HHHHhhccchHHHHHHHHHHHhhcC------cHHHHHHHHh--cCCccHHHHHHHHHHHHcCch--hH---HHHHHHHHH
Confidence 4444566655677777777743322 2233344432 356777777888888787664 33 335555555
Q ss_pred hhhcchh----H---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670 112 RVGASAF----V---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (594)
Q Consensus 112 ~l~~~~~----~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL 171 (594)
.+..+|- + .++.-|+..|..+.+..+-.+|.+||..++=-.+..+.+||+.|+.=+.+++
T Consensus 95 ~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 95 FVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred HHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence 5554431 1 2777778888778889999999999999999998888999999999888888
No 230
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=67.80 E-value=1.1e+02 Score=31.30 Aligned_cols=179 Identities=14% Similarity=0.161 Sum_probs=92.2
Q ss_pred CCCCcchHHHHHHHHHHHhhh----ccccchHHHHH-------HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhH
Q 007670 54 SDKPGVRKECIHVIATLSNSH----NLSPYITKIIN-------SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTML 122 (594)
Q Consensus 54 s~kp~~RKaaI~lLGvlae~h----~isphLpkIL~-------~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~l 122 (594)
++++.+-|.+|.+++.+=... ...+..+.+|. .|+..+.+..++||-+|..=+-.+.-.....+
T Consensus 4 d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~----- 78 (239)
T PF11935_consen 4 DEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGS----- 78 (239)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS--------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC-----
Confidence 457788888888888874443 24555555554 34456666667777666644333322221110
Q ss_pred HHHHHHHccCCCh-hHHHHHHHHHHHHHhhcCCCcc--hhH----HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670 123 KLLSDALFTEQDT-NAQVGAALCLAATIDAAQDPDA--GKL----GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 123 kPL~eaL~~eq~k-~vQ~~Aa~ALaavvE~l~~~i~--~yL----~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~ 195 (594)
.+..+ ..+ ..-..|+.+-.+ .+++ ..| ..|+++|+..|..++ -.-..+..+|++++..++.
T Consensus 79 --------~~~~~~~~~-~~d~SL~~vp~~--Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~-i~~~~~~a~insL~~Iak~ 146 (239)
T PF11935_consen 79 --------SDSPPRRGS-PNDFSLSSVPPN--HPLLNPQQLEAEANGLLDRLLDVLQSPH-ISSPLLTAIINSLSNIAKQ 146 (239)
T ss_dssp --------TTS---GGG-TTS--GGGS-TT---SSS-HHHHHHHHHHHHHHHHHHHC-TT---HHHHHHHHHHHHHHHHH
T ss_pred --------CCCcccccc-ccCCCHHHcCCC--CCcCCHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHHHHHH
Confidence 00000 000 001112222221 1111 112 448889999998876 2334466677777766666
Q ss_pred cCCchHHHHHHHHhhhcCC-------cHHHHHHHHH-HHHHHHHH-cC-CccchhhhHHHHHHH
Q 007670 196 DGSGLKGLVSCLLGFLSSQ-------DWAARKAAAE-ALWRLAVV-EK-DAVPEFKGKCLKIFE 249 (594)
Q Consensus 196 ~~pyf~~lm~~L~e~L~se-------Dw~lRKaAaD-aLg~IA~a-~g-d~f~py~~~~m~sLE 249 (594)
-++|+..++++|..|=.+. .-.+-+...+ +|-..-.. .+ ....||..++.+.|+
T Consensus 147 RP~~~~~Il~~ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk~~~~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 147 RPQFMSRILPALLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLKHPASSPFQGRITQALT 210 (239)
T ss_dssp SGGGHHHHHHHHHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHCCCCchhhHHHHHHHHH
Confidence 6788888999999885421 2223333333 23222222 33 444499999988888
No 231
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=67.37 E-value=1.5e+02 Score=32.52 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHhhchhhhcchhHH---hHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhc---CC------Cc---chh
Q 007670 97 ALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFT--EQDTNAQVGAALCLAATIDAA---QD------PD---AGK 159 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~~~~~~~---~lkPL~eaL~~--eq~k~vQ~~Aa~ALaavvE~l---~~------~i---~~y 159 (594)
..|.||++=|-.|+++..++.... ++.-++..... ..+.....+|.+-+.++.-.. .. .. .+.
T Consensus 226 TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 226 TRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 579999999999998875443222 33333332211 223344456555444443332 11 11 122
Q ss_pred HHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007670 160 LGR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (594)
Q Consensus 160 L~~-L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaL 226 (594)
+.. +.|.|. -=.+...-.|+-++-.|...... ...+.+..++|.+..+|.+++..++.-||.|+
T Consensus 306 f~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~--l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 306 FSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQ--LPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGG--S-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhh--CCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 222 333333 11122333455555555543322 11267888999999999999999999998775
No 232
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=66.12 E-value=3.1e+02 Score=33.37 Aligned_cols=208 Identities=15% Similarity=0.113 Sum_probs=122.2
Q ss_pred HHHHHHHHHhhcC-CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHH---Hhhh-ccccchHHHHHHHHhhhcCCChhHH
Q 007670 25 AAKELDSIAATVD-PTLLPTFLSCILSTNSSDKPGVRKECIHVIATL---SNSH-NLSPYITKIINSITRNFRDKNSALQ 99 (594)
Q Consensus 25 A~~eLD~LA~~Lp-pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl---ae~h-~isphLpkIL~~IvrrLkD~Ds~VR 99 (594)
|...+-.+-..++ +..+...+........+..-+++-+|-++|-.+ -+.| .++-|+|.+|.-+...-++-+.-+-
T Consensus 480 ace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~L 559 (970)
T COG5656 480 ACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPL 559 (970)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHH
Confidence 4444555544453 322444444444444455668888888888876 3455 8899999999999999998887665
Q ss_pred HHHHHH-HHhhchhhhcchhH---------HhHHHHHHHHccCC-----ChhHHHHHHHHH---HHHHhhcCCCc--chh
Q 007670 100 ATCIST-VSSLSPRVGASAFV---------TMLKLLSDALFTEQ-----DTNAQVGAALCL---AATIDAAQDPD--AGK 159 (594)
Q Consensus 100 ~Ac~~A-LG~LAe~l~~~~~~---------~~lkPL~eaL~~eq-----~k~vQ~~Aa~AL---aavvE~l~~~i--~~y 159 (594)
.-|.++ ++++++.+ .|+. .|+|-..+.+.+.. .-.-|++|.+-| ..+|=.++..+ +.|
T Consensus 560 S~vMe~fVe~fseEL--spfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~ 637 (970)
T COG5656 560 SMVMESFVEYFSEEL--SPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKY 637 (970)
T ss_pred HHHHHHHHHHhHHhh--chhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 555554 57888888 4432 25665555553221 012344444433 34444444322 344
Q ss_pred HHH-HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcH-HHHHHHHHHHHHHHHHcC
Q 007670 160 LGR-MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDW-AARKAAAEALWRLAVVEK 234 (594)
Q Consensus 160 L~~-L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw-~lRKaAaDaLg~IA~a~g 234 (594)
+.. +.|-+-=.|++.-+-.-.-++..|-...-+.++..|..+.+.+.|++++.+++- .-=..++++|..+.+.+|
T Consensus 638 le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 638 LEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 433 444444455555333333344444333333455558888888899998887663 223568889999888776
No 233
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=65.83 E-value=1.4e+02 Score=33.78 Aligned_cols=180 Identities=15% Similarity=0.103 Sum_probs=104.6
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcC-------------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHH
Q 007670 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVD-------------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATL 70 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lp-------------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl 70 (594)
...+-++.+|.+.+..||.+..+..++.|.+..| ++...+|+..|. +++.+.--.+...|+.+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~----~~d~~i~~~a~~iLt~l 128 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLN----RQDQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHc----CCchhHHHHHHHHHHHH
Confidence 4456678889999999999999999999888754 334566666443 46677777777777777
Q ss_pred Hhhh---ccccchHHHHHHHHhhhcCCC-hhHHHHHHHHHHhhchhh-hcchhHH--hHHHHHHHHccCC-ChhHHHHHH
Q 007670 71 SNSH---NLSPYITKIINSITRNFRDKN-SALQATCISTVSSLSPRV-GASAFVT--MLKLLSDALFTEQ-DTNAQVGAA 142 (594)
Q Consensus 71 ae~h---~isphLpkIL~~IvrrLkD~D-s~VR~Ac~~ALG~LAe~l-~~~~~~~--~lkPL~eaL~~eq-~k~vQ~~Aa 142 (594)
.... .-...++.++..+...|+-++ +.....|+..++.|...= -+..+.. .+++|+..|-... +...|=-++
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 5432 222356678888888888654 445555555554432211 0111211 6778888774222 334444666
Q ss_pred HHHHH--HHhhcCCCcchhH--HHHHHHHHHHhcCC-chhhHHHHHHHHHHHHh
Q 007670 143 LCLAA--TIDAAQDPDAGKL--GRMEVRLERLLKSE-VFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 143 ~ALaa--vvE~l~~~i~~yL--~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~ 191 (594)
.|+=- |-+. ..+.+ ..+++.|..+++.. -=|+--.++.++-=+..
T Consensus 209 l~lWlLSF~~~----~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 209 FCIWLLTFNPH----AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHHhccHH----HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 66533 2222 11122 34777777777544 22333334444444443
No 234
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=65.41 E-value=1.5e+02 Score=35.97 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=95.5
Q ss_pred cchHHHHHHHHhhhcCC-ChhHHHHHHHHHHhhchhhhcchhHH---hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670 78 PYITKIINSITRNFRDK-NSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (594)
Q Consensus 78 phLpkIL~~IvrrLkD~-Ds~VR~Ac~~ALG~LAe~l~~~~~~~---~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~ 153 (594)
|.|-..|=-|++.-+.. ++.+-.-|++.+|++..|+. -..++ |++-|++.| +-+.+-++||.|+-++|-.=-
T Consensus 188 p~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWId-InLIaNd~f~nLLy~fl---~ieelR~aac~cilaiVsKkM 263 (980)
T KOG2021|consen 188 PKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWID-INLIANDYFLNLLYKFL---NIEELRIAACNCILAIVSKKM 263 (980)
T ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhh-hhhhhchhHHHHHHHHH---hHHHHHHHHHHHHHHHHhcCC
Confidence 44444444455555556 88899999999999999992 22332 666666666 367788899999999998633
Q ss_pred CC-c-chhHHHHHH--HHHHHhc-----CCchhhHHH-HHH-----HHHHHHhcCcCc--------CCchHHHHHHHHhh
Q 007670 154 DP-D-AGKLGRMEV--RLERLLK-----SEVFKAKAA-GLV-----VVGSVIGSGAVD--------GSGLKGLVSCLLGF 210 (594)
Q Consensus 154 ~~-i-~~yL~~L~~--RL~klL~-----s~~fkaK~a-lL~-----aIGSiA~a~~~~--------~pyf~~lm~~L~e~ 210 (594)
++ . ++.|..|+. +++.... ..+|-.+-+ ++. .+....+...+. ...+-.++|.|.++
T Consensus 264 kP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~ 343 (980)
T KOG2021|consen 264 KPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQF 343 (980)
T ss_pred ChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 2 456666632 3443332 123333322 111 111111221111 12344577888888
Q ss_pred hcCCcHHHHHHHHH-HHHHHHH-----HcC-CccchhhhHHHHHHHhcchhHHH
Q 007670 211 LSSQDWAARKAAAE-ALWRLAV-----VEK-DAVPEFKGKCLKIFESKRFDKMI 257 (594)
Q Consensus 211 L~seDw~lRKaAaD-aLg~IA~-----a~g-d~f~py~~~~m~sLEs~RfDK~i 257 (594)
|.+++=+.-....- +.+.++. +.. ..+.|....++.++-...||.|+
T Consensus 344 l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy 397 (980)
T KOG2021|consen 344 LNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMY 397 (980)
T ss_pred hcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHh
Confidence 88653222122222 2222222 122 34555555555677777777744
No 235
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=65.23 E-value=40 Score=31.52 Aligned_cols=72 Identities=18% Similarity=0.085 Sum_probs=52.9
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcCC-chh---hHHHHHHHHHHHHhcC
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSE-VFK---AKAAGLVVVGSVIGSG 193 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s~-~fk---aK~alL~aIGSiA~a~ 193 (594)
.++-|-.-| ...++++|.-|..-|+.++.|.++.....+ .+.+..|.+++... ... +|.-++..|..-+.+=
T Consensus 43 a~~~l~krl-~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRL-KHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHH-TTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 344444555 668999999999999999999987653332 34788899988755 333 7888998888776543
No 236
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=65.18 E-value=7.3 Score=36.32 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHH---HHhhhhcCCCCCCcchHHHHHHHHHHH
Q 007670 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTF---LSCILSTNSSDKPGVRKECIHVIATLS 71 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~f---Ls~L~e~~ss~kp~~RKaaI~lLGvla 71 (594)
++-++++.+|.+-.|..|..+|+..|-.++++.|.-. +.-- -..|.+-..++++.+|++|++++..+.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4556778888776677799999999999999997543 2211 123344466789999999999988764
No 237
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=65.17 E-value=1.6e+02 Score=29.87 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=102.4
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH-HhHHHHHHHHc
Q 007670 52 NSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV-TMLKLLSDALF 130 (594)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~-~~lkPL~eaL~ 130 (594)
....+|......+.+|+.+|..-. ...+.++..+......+...++..+. ..++.-...++-. .++++++.-+.
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~---rLl~~lw~~~~r~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVAL---RLLTLLWKANDRHFPFLQPLLLLLI 84 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHH---HHHHHHHHhCchHHHHHHHHHHHHH
Confidence 445666777777777777755433 67788888888888777776643333 3333333222211 36666665521
Q ss_pred ---------cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhcCcCcCCch
Q 007670 131 ---------TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIGSGAVDGSGL 200 (594)
Q Consensus 131 ---------~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL-~s~~fkaK~alL~aIGSiA~a~~~~~pyf 200 (594)
++..-..+.+.+.++..+|...++ +-..+++.|..+| ++.+-.+++..+.+|.++-.+. ..-|
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~---vvd~ 157 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE---VVDF 157 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh---hccH
Confidence 122444667888999999998776 6667777888888 6667778888888998877332 1223
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 201 ~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
..+-..|...|. -+.|-..+.+|..+-..
T Consensus 158 ~s~w~vl~~~l~---~~~rp~v~~~l~~l~~l 186 (234)
T PF12530_consen 158 YSAWKVLQKKLS---LDYRPLVLKSLCSLFAL 186 (234)
T ss_pred HHHHHHHHHhcC---CccchHHHHHHHHHHHH
Confidence 444455655553 33334455555555544
No 238
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=64.72 E-value=80 Score=33.95 Aligned_cols=138 Identities=16% Similarity=0.199 Sum_probs=98.9
Q ss_pred HHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHh-hh-cccc
Q 007670 5 LKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSN-SH-NLSP 78 (594)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae-~h-~isp 78 (594)
+=+|+-|||+---=.--|+-|++.-+.|=+.+.++. ++.++.=|.+..+.....+|..-+.++..--- -- .+.|
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p 134 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRP 134 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHH
Confidence 345666777654444578888888888888887665 66777777777777777888888887766311 11 7778
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHH
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAA 147 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaa 147 (594)
.++.|+..+.-+|.|..+-+-+-+..-+-.+.+.+.+. .|..-++.++. .++.+-.+|..-|.+
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~---~F~~~lwl~ii--~sp~~Rl~al~~l~~ 198 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK---YFWQCLWLCII--TSPSRRLGALNYLLR 198 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh---HHHHHHHHHHh--cCcchhHHHHHHHHH
Confidence 99999999999999999999888888888888776322 47777788876 455555454443333
No 239
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=64.48 E-value=60 Score=41.13 Aligned_cols=200 Identities=11% Similarity=0.062 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccc-hHHHHHHHHhhhcCCChhHH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPY-ITKIINSITRNFRDKNSALQ 99 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isph-LpkIL~~IvrrLkD~Ds~VR 99 (594)
-.+.|-..+..+|.++-+.-=..|.+|+..+.+..-+. .+....++-+.+.++|+ |--++|.+..-|.-.+-.+|
T Consensus 201 a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~----~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~R 276 (1266)
T KOG1525|consen 201 ADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSL----KIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVR 276 (1266)
T ss_pred HHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccch----hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHH
Confidence 56788888999999998877788888998876522222 23445556666666776 78899999999999999999
Q ss_pred HHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCch
Q 007670 100 ATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF 176 (594)
Q Consensus 100 ~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~f 176 (594)
--+...+|.+-.....+-+ .-..|++.+.+ .+....|-....-+.--++-+-++ ....+..-+.......++
T Consensus 277 l~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~----~~~~~~~~~~l~~~~~D~ 351 (1266)
T KOG1525|consen 277 LKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS----IAKASTILLALRERDLDE 351 (1266)
T ss_pred HHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch----hhhHHHHHHHHHhhcCCh
Confidence 9999999988765532211 12445555544 234443333222211111111111 111111111111112233
Q ss_pred hhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 177 KAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 177 kaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
..+-...-+|.. ..-..| ..|.+.+|..+.+-+.+--|.+|+.|+..|..|=.
T Consensus 352 ~~rir~~v~i~~--~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 352 DVRVRTQVVIVA--CDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hhhheeeEEEEE--eehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 332221111110 001123 46666688888888889999999999999987755
No 240
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=63.93 E-value=1.6e+02 Score=31.53 Aligned_cols=94 Identities=16% Similarity=0.313 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-------CCCCCCcchHHHHHHHHHHHhhh-----cc-ccchHHHHHHH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-----NL-SPYITKIINSI 87 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~-------~ss~kp~~RKaaI~lLGvlae~h-----~i-sphLpkIL~~I 87 (594)
...+....+..+-..++ +.++.++..+-+. +-..=|.+|.+-+.+|..+++.| .+ ..++..++-+|
T Consensus 92 vL~l~~~ii~kl~~~~~-~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi 170 (319)
T PF08767_consen 92 VLSLMATIINKLGELIQ-PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSI 170 (319)
T ss_dssp HHHHHHHHHHHHGGGCC-CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555444 4566666555332 22345889999999999999988 22 23578899999
Q ss_pred HhhhcCCChhHHHHHHHHHHhhchhhhc
Q 007670 88 TRNFRDKNSALQATCISTVSSLSPRVGA 115 (594)
Q Consensus 88 vrrLkD~Ds~VR~Ac~~ALG~LAe~l~~ 115 (594)
+-+++.++..|-+.|+.++..|.+.+.+
T Consensus 171 ~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 171 VWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999976
No 241
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=63.40 E-value=2.2e+02 Score=34.12 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhhcC-------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHh
Q 007670 21 TYSQAAKELDSIAATVD-------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITR 89 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lp-------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~Ivr 89 (594)
-.++|+..|-.||.+.. ..-|+.|+.+|.. .+....-.++..|--|+-.- .+.. ..+++.+.+
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr----~n~ellil~v~fLkkLSi~~ENK~~m~~--~giV~kL~k 338 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDR----ENEELLILAVTFLKKLSIFKENKDEMAE--SGIVEKLLK 338 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHcCCHHHHHHHHH--cCCHHHHHH
Confidence 56777777888887642 3338888888752 33344444444454443211 2211 136677777
Q ss_pred hhcCCChhHHHHHHHHHHhhchhhhc-chhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH--HHH
Q 007670 90 NFRDKNSALQATCISTVSSLSPRVGA-SAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG--RME 164 (594)
Q Consensus 90 rLkD~Ds~VR~Ac~~ALG~LAe~l~~-~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~--~L~ 164 (594)
.|+-++..+++.++..|..|+..-.- .-++. ++++|..-|. +++.+..+...|..+.. ++.....+. .-+
T Consensus 339 Ll~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~--dd~~r~~f~~TdcI 413 (708)
T PF05804_consen 339 LLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSM--DDEARSMFAYTDCI 413 (708)
T ss_pred HhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhcc--CHhhHHHHhhcchH
Confidence 77778888999999999999877631 22332 8888887773 33344333333333322 222222222 134
Q ss_pred HHHHHHh-cCCchhhHHHHHHHHHHHHh
Q 007670 165 VRLERLL-KSEVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 165 ~RL~klL-~s~~fkaK~alL~aIGSiA~ 191 (594)
+.+.++| .++.-++...++.++-.++.
T Consensus 414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~ 441 (708)
T PF05804_consen 414 PQLMQMLLENSEEEVQLELIALLINLAL 441 (708)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHhc
Confidence 4555543 44455555555555555553
No 242
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=63.06 E-value=1e+02 Score=27.84 Aligned_cols=74 Identities=19% Similarity=0.160 Sum_probs=52.7
Q ss_pred hhHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 158 GKLGRMEVRLERLLK-SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 158 ~yL~~L~~RL~klL~-s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
.+++.++|-+.+.|. +.....+.+.+-.|+-++....-....++.+|..+...+....- .+.+.-+|..|...-
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 478999999999999 66777888888888877765533345556666666665554443 566888888887654
No 243
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=62.93 E-value=80 Score=31.20 Aligned_cols=73 Identities=15% Similarity=0.245 Sum_probs=54.1
Q ss_pred CcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch---hHHhHHHHHHHHc
Q 007670 57 PGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA---FVTMLKLLSDALF 130 (594)
Q Consensus 57 p~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~---~~~~lkPL~eaL~ 130 (594)
-..||.|+-+|-.+-+.|.-.-.+..++..|..+|.| +.-|+--|+--+..|+......- ...++.||-..|.
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999988772222588999999999999 99999999999999977763221 1236667666663
No 244
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=62.66 E-value=66 Score=30.56 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=56.6
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcC------CchhhHHHHHHHHHHHHhcC
Q 007670 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS------EVFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 122 lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s------~~fkaK~alL~aIGSiA~a~ 193 (594)
++-|..-| ...++++|.-|..-|+++++|.++.....+ ...+..|.+++.. .+..+|.-++.+|-.-+.+=
T Consensus 40 ~rai~krl-~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 40 VRLLAHKI-QSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 33344444 678999999999999999999998764332 2256668888852 46788888999988776432
Q ss_pred cCcCCchHHHHHHH
Q 007670 194 AVDGSGLKGLVSCL 207 (594)
Q Consensus 194 ~~~~pyf~~lm~~L 207 (594)
+. .|.+..+-..|
T Consensus 119 ~~-~p~~~~~Y~~L 131 (139)
T cd03567 119 PH-EPKIKEAYDML 131 (139)
T ss_pred cc-cchHHHHHHHH
Confidence 21 25544444333
No 245
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=62.07 E-value=2.1e+02 Score=37.98 Aligned_cols=186 Identities=10% Similarity=0.132 Sum_probs=109.7
Q ss_pred HHHHHH---hhcCCCChHHHHHhhhhcCCCC---CCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHh----hhcCCC
Q 007670 28 ELDSIA---ATVDPTLLPTFLSCILSTNSSD---KPGVRKECIHVIATLSNSH--NLSPYITKIINSITR----NFRDKN 95 (594)
Q Consensus 28 eLD~LA---~~Lppe~lp~fLs~L~e~~ss~---kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Ivr----rLkD~D 95 (594)
.+|.|= ..|+.+.|..|+.+|++-.... ...-|-.++-.|..++..- -+.=.-.+||.++.. --..++
T Consensus 1071 ~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n 1150 (1780)
T PLN03076 1071 EMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSEN 1150 (1780)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcc
Confidence 445543 3478888999999997642111 1245778887777776655 222244676665544 223456
Q ss_pred hhHHHHHHHHHHhhchhhhcch------hH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 007670 96 SALQATCISTVSSLSPRVGASA------FV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168 (594)
Q Consensus 96 s~VR~Ac~~ALG~LAe~l~~~~------~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~ 168 (594)
..|+--|++.|.++|-...+.. +. -||+|+...|-...+..++.-..-|+..+|+.-.+.+..--..+..=|.
T Consensus 1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs 1230 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFT 1230 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 7799999999999998776532 22 3999999888656677888899999999988755444332233333333
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcCcCc-----CCchHHHHHHHHhhhcC
Q 007670 169 RLLKSEVFKAKAAGLVVVGSVIGSGAVD-----GSGLKGLVSCLLGFLSS 213 (594)
Q Consensus 169 klL~s~~fkaK~alL~aIGSiA~a~~~~-----~pyf~~lm~~L~e~L~s 213 (594)
-....++-.+-..+...+.-|..-.-.. ...|..+|.||.+|...
T Consensus 1231 ~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q 1280 (1780)
T PLN03076 1231 TAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNS 1280 (1780)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhC
Confidence 2333333222222333333222110000 13566677777777643
No 246
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.99 E-value=1.8e+02 Score=35.21 Aligned_cols=164 Identities=16% Similarity=0.255 Sum_probs=94.4
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHH
Q 007670 7 TSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS 86 (594)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~ 86 (594)
++.+.++-|.+|..-.-+-+.-|-.+. ...-.-+.-+.--+...+++++-.+|+-++-..=-|++.|. ...|+.+
T Consensus 282 ~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----vediv~~ 356 (948)
T KOG1058|consen 282 STYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----VEDIVQF 356 (948)
T ss_pred HHHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----HHHHHHH
Confidence 456777777777665555444444443 11111144444444555788899999999987777777772 3566666
Q ss_pred HHhhhcC-------CChhHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670 87 ITRNFRD-------KNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (594)
Q Consensus 87 IvrrLkD-------~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~ 158 (594)
+.+.+.+ ....-|+.-..|+...|-... ...+ ++.-|++.| ++.+.....+...=+-.++|..+.--..
T Consensus 357 Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fi-sD~N~~aas~vl~FvrE~iek~p~Lr~~ 433 (948)
T KOG1058|consen 357 LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFI-SDSNEAAASDVLMFVREAIEKFPNLRAS 433 (948)
T ss_pred HHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHhCchHHHH
Confidence 6666644 334579999999988887762 2222 777777777 5555543333333344444443332233
Q ss_pred hHHHHHHHHHHHhcCCchhh
Q 007670 159 KLGRMEVRLERLLKSEVFKA 178 (594)
Q Consensus 159 yL~~L~~RL~klL~s~~fka 178 (594)
.+.+|++-+-++=.+..|+.
T Consensus 434 ii~~l~~~~~~irS~ki~rg 453 (948)
T KOG1058|consen 434 IIEKLLETFPQIRSSKICRG 453 (948)
T ss_pred HHHHHHHhhhhhcccccchh
Confidence 44445444444333334443
No 247
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=60.09 E-value=69 Score=30.18 Aligned_cols=44 Identities=27% Similarity=0.367 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc
Q 007670 7 TSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILST 51 (594)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~ 51 (594)
.++..+|+||++..-. ..+++|..+.....++.+..++..|.+.
T Consensus 2 r~v~~~lnklt~~n~~-~~~~~l~~~~~~~~~~~~~~i~~~i~~~ 45 (209)
T PF02854_consen 2 RKVRGILNKLTPSNFE-SIIDELIKLNWSDDPETLKEIVKLIFEK 45 (209)
T ss_dssp HHHHHHHHHCSSTTHH-HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHCCHHHHH-HHHHHHHHHHhhccHHHHHHHHHHHhhh
Confidence 3677889999964444 4445555555544555577777777664
No 248
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=59.72 E-value=3e+02 Score=31.01 Aligned_cols=93 Identities=13% Similarity=0.132 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHH-hhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc--hHHHHHHHHhhhcCCC-
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLS-CILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDKN- 95 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs-~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph--LpkIL~~IvrrLkD~D- 95 (594)
+.-.|++.|=.+...++.+.+..++. .|..++.++-...|--+-+.+..-|..+ ...+. .+.+.+.+..-|.++.
T Consensus 103 ~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~~~ 182 (441)
T PF12054_consen 103 ARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENPEP 182 (441)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCCCC
Confidence 56677888888888898877777777 5888888888888888888888777777 33333 3667777777777665
Q ss_pred ----------hhHHHHHHHHHHhhchhh
Q 007670 96 ----------SALQATCISTVSSLSPRV 113 (594)
Q Consensus 96 ----------s~VR~Ac~~ALG~LAe~l 113 (594)
..||.-|..-+..|.++-
T Consensus 183 ~~Y~El~~~l~~lr~ec~~Ll~~f~~~g 210 (441)
T PF12054_consen 183 PYYDELVPSLKRLRTECQQLLATFRDVG 210 (441)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 235666666666655554
No 249
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.57 E-value=1.6e+02 Score=35.69 Aligned_cols=186 Identities=16% Similarity=0.166 Sum_probs=100.7
Q ss_pred HHhhhhcCCCCCCcchHHHHHHHHHH--Hhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH
Q 007670 45 LSCILSTNSSDKPGVRKECIHVIATL--SNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV 119 (594)
Q Consensus 45 Ls~L~e~~ss~kp~~RKaaI~lLGvl--ae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~ 119 (594)
++|+..+....+-.+|.++|-+|..+ +++- -+---.|.=++.++-.|.|.--.||+++.-=|-.|......---.
T Consensus 124 I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKl 203 (970)
T KOG0946|consen 124 ITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKL 203 (970)
T ss_pred HHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHH
Confidence 44444555556778999999999988 2222 111124556777888899999999999886666555444210111
Q ss_pred HhHHHHHHHHcc--CCChhHHH--HHHHHHHHHHhh-cCCCc--chhHHH--HHHHHHHHhcCCchhh---------H--
Q 007670 120 TMLKLLSDALFT--EQDTNAQV--GAALCLAATIDA-AQDPD--AGKLGR--MEVRLERLLKSEVFKA---------K-- 179 (594)
Q Consensus 120 ~~lkPL~eaL~~--eq~k~vQ~--~Aa~ALaavvE~-l~~~i--~~yL~~--L~~RL~klL~s~~fka---------K-- 179 (594)
+.+.+.|+-||. +.+.++-. .+--||- ++.| +.+-. -.||.. -+|||.++|...-|.- |
T Consensus 204 VAFENaFerLfsIIeeEGg~dGgIVveDCL~-ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~ 282 (970)
T KOG0946|consen 204 VAFENAFERLFSIIEEEGGLDGGIVVEDCLI-LLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQ 282 (970)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-HHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHH
Confidence 356666666652 11111111 1122222 1222 22222 234443 6778888885332211 2
Q ss_pred --HHHHHHHHHHHhcCcCcC---Cc---h--HHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHH
Q 007670 180 --AAGLVVVGSVIGSGAVDG---SG---L--KGLVSCLLGFLSSQD--WAARKAAAEALWRLAV 231 (594)
Q Consensus 180 --~alL~aIGSiA~a~~~~~---py---f--~~lm~~L~e~L~seD--w~lRKaAaDaLg~IA~ 231 (594)
-.+|.+|.+++.-+.... +. + ..+|..|...|.+++ -.+|+.++-+++-+.+
T Consensus 283 Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVR 346 (970)
T KOG0946|consen 283 NVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVR 346 (970)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHH
Confidence 236667777665442211 11 1 125777888887774 5556666666655544
No 250
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.42 E-value=3.9e+02 Score=34.97 Aligned_cols=165 Identities=16% Similarity=0.181 Sum_probs=89.9
Q ss_pred HHHHHhhh----ccccch-HHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcchhH-------HhHHHHHHHHccCC
Q 007670 67 IATLSNSH----NLSPYI-TKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFV-------TMLKLLSDALFTEQ 133 (594)
Q Consensus 67 LGvlae~h----~isphL-pkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~~~~-------~~lkPL~eaL~~eq 133 (594)
.+.+|.+. .+.+|+ +.++..+.....|+.+ .||.|.+.=+-.+ -+. ..|+ -+-+-++.+| .+.
T Consensus 1506 ~a~~~~~lm~~~~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~-vy~--n~Fv~~~~~r~dI~~l~~s~l-~D~ 1581 (1710)
T KOG1851|consen 1506 SALLCHSLMSLSWIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQTV-VYS--NIFVSQELRRDDIRKLLESLL-NDD 1581 (1710)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHH--HhhcccchhHHHHHHHHHHHH-cch
Confidence 33344444 555664 4455555556667766 7898855433222 222 1111 2555556666 566
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh---cCCchhhHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHh
Q 007670 134 DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL---KSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLG 209 (594)
Q Consensus 134 ~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL---~s~~fkaK~alL~aIGSiA~a~~-~~~pyf~~lm~~L~e 209 (594)
+..|-.-|+-||+-++.+..-...+ ..-.++.+-+ .-+-.++..+++ .+|+++-+-. ..+-+++..+..|..
T Consensus 1582 ~i~vre~Aa~~Lsgl~~~s~~~~~~---~k~d~~~~~~~s~s~~~i~~Hgavl-gLgA~VlafPy~vP~wip~~L~~Ls~ 1657 (1710)
T KOG1851|consen 1582 QIEVREEAAKCLSGLLQGSKFQFVS---DKRDTTSNILQSKSKDEIKAHGAVL-GLGAIVLAFPYVVPLWIPKPLMNLSS 1657 (1710)
T ss_pred HHHHHHHHHHHHHHHHhccccccch---HhhhhhhhhhhhcchHHHHhhhhHH-HHHHHHHhccccchhhhHHHHHHHHh
Confidence 6678889999999999987544333 1111111111 112344455555 3444443332 223344555555555
Q ss_pred hhcCCcHHHHHHHHHHHHHHHHHcCCccchh
Q 007670 210 FLSSQDWAARKAAAEALWRLAVVEKDAVPEF 240 (594)
Q Consensus 210 ~L~seDw~lRKaAaDaLg~IA~a~gd~f~py 240 (594)
|..+. -+++.++-.+++..-..+.|.++..
T Consensus 1658 fa~e~-~~i~~tvkktvseFrrth~D~W~~~ 1687 (1710)
T KOG1851|consen 1658 FARES-AAIKQTVKKTVSEFRRTHADTWREH 1687 (1710)
T ss_pred hcCCc-hHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 55444 6777888888887777666665544
No 251
>PF04003 Utp12: Dip2/Utp12 Family; InterPro: IPR007148 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This domain is found at the C terminus of proteins containing WD40 repeats. These proteins are part of the U3 ribonucleoprotein. In yeast, these proteins are called Utp5, Utp1 or Pwp2, Utp12 or DIP2 Q12220 from SWISSPROT. They interact with snoRNA U3 and with MPP10 []. Pwp2 is an essential Saccharomyces cerevisiae (Baker's yeast) protein involved in cell separation.
Probab=59.02 E-value=25 Score=31.04 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=62.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccc---cchHHHHHHHHhhhcCCChhHHH
Q 007670 26 AKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS---PYITKIINSITRNFRDKNSALQA 100 (594)
Q Consensus 26 ~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~is---phLpkIL~~IvrrLkD~Ds~VR~ 100 (594)
..+++..+..||+..++.||..|.+...-.+++.=.-.++.+=.+...| .+. |.+...+..+.+.++.--..+++
T Consensus 15 ~~~I~~tv~~Lp~~~~~~LL~~l~~~l~~~~~~~~e~~l~Wl~~ll~~H~~~l~~~~~~~~~~L~~L~~~l~~~~~~l~~ 94 (110)
T PF04003_consen 15 PSDIENTVRSLPFSYAERLLQFLSERLQTRKSPHVEFLLRWLKALLKTHGSYLSSSSPELRPVLRSLQKILRERLQNLSK 94 (110)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999776566677777777777777777 333 45777777777777665566666
Q ss_pred HHHHHHHhh
Q 007670 101 TCISTVSSL 109 (594)
Q Consensus 101 Ac~~ALG~L 109 (594)
.|-.-+|.|
T Consensus 95 l~~~n~~~L 103 (110)
T PF04003_consen 95 LLDLNLGRL 103 (110)
T ss_pred HHHHhHHHH
Confidence 666555544
No 252
>PRK09169 hypothetical protein; Validated
Probab=58.49 E-value=3.2e+02 Score=36.97 Aligned_cols=160 Identities=21% Similarity=0.237 Sum_probs=92.1
Q ss_pred HHHHHHhhcCCChhHHHHHHHHH-------HHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccc-
Q 007670 7 TSVNGLLNKLSDRDTYSQAAKEL-------DSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLS- 77 (594)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eL-------D~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~is- 77 (594)
-+++..|.|+.+-+.++.|+..| ..++..+.|..|...|..|.-- .+.+..|+++..+.+.++..- ...
T Consensus 502 AN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKW--P~~~~cr~AA~aLA~~la~~~~l~~~ 579 (2316)
T PRK09169 502 ANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKW--PEEPDCRAAAEALAARLARRPDLRSA 579 (2316)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHHhcChhhhhc
Confidence 36788999999999887777766 4466778887788888888742 234556888888887775543 222
Q ss_pred ---cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-----hH-HhHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007670 78 ---PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-----FV-TMLKLLSDALFTEQDTNAQVGAALCLAAT 148 (594)
Q Consensus 78 ---phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-----~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaav 148 (594)
..|...+..+-|- |+. .+|..+.-.|++.+.+.+ +. .-+-+++.+|..=++...-..|+.+|+.-
T Consensus 580 ~naQ~LAN~LnALSKW---P~~---~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~ 653 (2316)
T PRK09169 580 LNAQGLANLLNALSKW---PDE---DACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAAR 653 (2316)
T ss_pred cCHHHHHHHHHHHhhC---CCc---hhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 2344444443332 442 466666666666665432 22 25667777774222222223444445443
Q ss_pred Hhh----cCCCcchhHHHHHHHHHHHhcCC
Q 007670 149 IDA----AQDPDAGKLGRMEVRLERLLKSE 174 (594)
Q Consensus 149 vE~----l~~~i~~yL~~L~~RL~klL~s~ 174 (594)
+-. ..+...+.|..++.=|.|.-+.+
T Consensus 654 L~~~~~l~~af~aQ~LaN~LnALSKWp~~~ 683 (2316)
T PRK09169 654 LLRDAGLPRAFDAQGLANALNALSKWPDEA 683 (2316)
T ss_pred HhhcchhHHhcCcHHHHHHHHHHHhCCCcH
Confidence 311 11222355666666566655433
No 253
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=57.92 E-value=21 Score=35.87 Aligned_cols=70 Identities=21% Similarity=0.144 Sum_probs=56.6
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g 234 (594)
.-+.++|+-.--.+-..++.++++++..-+. +.|+|..++..|.+.-.+++...|+++=+++|+...+.|
T Consensus 3 ~~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG 73 (198)
T PF08161_consen 3 ATLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG 73 (198)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC
Confidence 3455667444444677799999999866544 569999999999999999999999999999999998877
No 254
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=57.22 E-value=1.7e+02 Score=28.76 Aligned_cols=71 Identities=8% Similarity=0.022 Sum_probs=56.5
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc
Q 007670 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA 152 (594)
Q Consensus 80 LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l 152 (594)
+++.|+.|.+..-+++..||.+|++.++.+...-.-.| .-+-|-+-||..++++.+...|...+..+.|.=
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 56667777778889999999999999988877664333 467777778878899999998888888887753
No 255
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=56.84 E-value=17 Score=31.07 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHhhhccccchH--HHHHHHHhhhcCCC-hhHHHHHHHHHHhhchhh
Q 007670 59 VRKECIHVIATLSNSHNLSPYIT--KIINSITRNFRDKN-SALQATCISTVSSLSPRV 113 (594)
Q Consensus 59 ~RKaaI~lLGvlae~h~isphLp--kIL~~IvrrLkD~D-s~VR~Ac~~ALG~LAe~l 113 (594)
..|+++-++|-++..-.=.++|+ .+++.|++-....+ -+||-.|..+||-+|.-.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~ 60 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE 60 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence 47999999999977652223444 58888888887655 489999999999998654
No 256
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=56.15 E-value=50 Score=35.84 Aligned_cols=74 Identities=11% Similarity=0.068 Sum_probs=38.2
Q ss_pred hcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCC----ChhHH--HHHHHHHHHHHhhcCCCcchhHHHHH
Q 007670 91 FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ----DTNAQ--VGAALCLAATIDAAQDPDAGKLGRME 164 (594)
Q Consensus 91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq----~k~vQ--~~Aa~ALaavvE~l~~~i~~yL~~L~ 164 (594)
+-+.+...|+||...|..= .+.. -|.|-|-..+.|| -++.| .....-.-+++.|-.=...||++.||
T Consensus 207 ~dEs~~~~r~aAl~sLr~d------sGlh-QLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hqlm 279 (450)
T COG5095 207 LDESDEQTRDAALESLRND------SGLH-QLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQLM 279 (450)
T ss_pred HHHHHHHHHHHHHHHhccC------ccHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHHHH
Confidence 4457778999998765421 1111 2333333333222 12222 22233333344443333368999999
Q ss_pred HHHHHHh
Q 007670 165 VRLERLL 171 (594)
Q Consensus 165 ~RL~klL 171 (594)
|-++-||
T Consensus 280 PSilTcl 286 (450)
T COG5095 280 PSILTCL 286 (450)
T ss_pred HHHHHHH
Confidence 9987776
No 257
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=56.02 E-value=18 Score=31.77 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=25.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHH
Q 007670 213 SQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKI 247 (594)
Q Consensus 213 seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~s 247 (594)
+++|++|.-|++.|+.|....++........+++.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~t 51 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRT 51 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 56899999999999999998875433333344433
No 258
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.83 E-value=59 Score=33.72 Aligned_cols=91 Identities=21% Similarity=0.131 Sum_probs=61.9
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc----CcCc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS----GAVD 196 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a----~~~~ 196 (594)
+|.-+++.|- +-+-..---|-.-+.-++...+..+++.||+|+.-|-..|.+.+-.++.-.|-+|.-+... |++.
T Consensus 115 yLp~F~dGL~-e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLA-ETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhh-hcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 5555566663 2222222223333445666678889999999999999999999888877777776665533 3344
Q ss_pred CCchHHHHHHHHhhhc
Q 007670 197 GSGLKGLVSCLLGFLS 212 (594)
Q Consensus 197 ~pyf~~lm~~L~e~L~ 212 (594)
.||..+++|.+.-|=.
T Consensus 194 VPfYRQlLp~~n~~k~ 209 (262)
T KOG3961|consen 194 VPFYRQLLPVLNTFKN 209 (262)
T ss_pred hhHHHHhhhhhhhhcc
Confidence 5999999999988743
No 259
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.63 E-value=3.3e+02 Score=36.21 Aligned_cols=194 Identities=18% Similarity=0.203 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHHHHh-------hcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHH-----------Hhhh---ccc
Q 007670 19 RDTYSQAAKELDSIAA-------TVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATL-----------SNSH---NLS 77 (594)
Q Consensus 19 rDT~r~A~~eLD~LA~-------~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl-----------ae~h---~is 77 (594)
+-+-..|+..||.-.+ ++++..--.++..+.+...+.|.. |+.+|.+=++. ++.- .+.
T Consensus 791 p~~lp~~ls~Idta~~lfg~vfp~v~~k~~~~ile~~~esi~~sk~~-r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg 869 (2067)
T KOG1822|consen 791 PYALPLALSLIDTAVSLFGSVFPHVNNKIRLSILEHFPESIKQSKSA-RQQSVQVNAVTWQALLSALKYLAEFKGATSLG 869 (2067)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHhhhhccc-hhHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 3344455666665322 233333444566667777777766 77666544433 2222 222
Q ss_pred cc-hH-HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670 78 PY-IT-KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (594)
Q Consensus 78 ph-Lp-kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~ 154 (594)
|+ +. -.+..++..|--+++..|=++.+++|+|+....+++|.+ ..+.+|+-|-.-+++..-.+-.+||.-+--..+.
T Consensus 870 ~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs 949 (2067)
T KOG1822|consen 870 PEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGS 949 (2067)
T ss_pred HHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 22 11 233456677888999999999999999999998888876 8999999996556666665555444444333322
Q ss_pred Cc-chhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcC
Q 007670 155 PD-AGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSS 213 (594)
Q Consensus 155 ~i-~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~s 213 (594)
.. -+.+..=..-|+.+-..+ ...++.-.|-++.=++.. ++-+.-|...+|..+...|-+
T Consensus 950 ~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls 1011 (2067)
T KOG1822|consen 950 IGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLS 1011 (2067)
T ss_pred CCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCC
Confidence 22 234444233333333333 335555555555555533 333456677777666666543
No 260
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.72 E-value=71 Score=33.19 Aligned_cols=96 Identities=17% Similarity=0.045 Sum_probs=71.5
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHH
Q 007670 148 TIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEA 225 (594)
Q Consensus 148 vvE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDa 225 (594)
..|.++ ...||+...+=|.. +++| .|-|+..+..++- ++++ ..|.++++|.-|...|..-|-++-+.++.+
T Consensus 106 ~pe~Ld--y~~yLp~F~dGL~e-~~hpyrf~A~~Gi~DLLl----~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkv 178 (262)
T KOG3961|consen 106 DPEKLD--YCPYLPLFFDGLAE-TDHPYRFVARQGITDLLL----AGGEKILPVLPQLILPLKAALVTRDDEVICRTLKV 178 (262)
T ss_pred CHHhcc--chHHHHHHhhhhhh-cCCCcchhhhhcHHHHHH----hcccccccccHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 445444 24567766665543 4566 7777777766654 2434 469999999999999999999999999999
Q ss_pred HHHHHHH---cCCccchhhhHHHHHHHh
Q 007670 226 LWRLAVV---EKDAVPEFKGKCLKIFES 250 (594)
Q Consensus 226 Lg~IA~a---~gd~f~py~~~~m~sLEs 250 (594)
|..|... +|..+-||..+++-+|+.
T Consensus 179 lq~lv~~~~~vG~aLVPfYRQlLp~~n~ 206 (262)
T KOG3961|consen 179 LQQLVVSVGCVGAALVPFYRQLLPVLNT 206 (262)
T ss_pred HHHHHHhccccchhhhhHHHHhhhhhhh
Confidence 9988876 468999998888887763
No 261
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=54.22 E-value=47 Score=40.94 Aligned_cols=103 Identities=11% Similarity=0.191 Sum_probs=69.0
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh-cchh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG-ASAF 118 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~-~~~~ 118 (594)
+|.|...|.- +.....|---|.++|.+|..| ++ ..+-+|.|..+|+||++.||+-+..-|++|-.+-. +=..
T Consensus 970 ~P~lvkeLe~---~~~~aiRnNiV~am~D~C~~YTam---~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~G 1043 (1529)
T KOG0413|consen 970 MPMLVKELEY---NTAHAIRNNIVLAMGDICSSYTAM---TDRYIPMIAASLCDPSVIVRRQTIILLARLLQFGIVKWNG 1043 (1529)
T ss_pred HHHHHHHHHh---hhHHHHhcceeeeehhhHHHHHHH---HHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhhhhhhcch
Confidence 7777777753 345578999999999999988 32 34556667899999999999988777766644331 1011
Q ss_pred HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (594)
Q Consensus 119 ~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~ 151 (594)
..|++=++ +|+ +.++.+..-|=.|+..++..
T Consensus 1044 ~Lf~Rf~l-~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1044 ELFIRFML-ALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hhHHHHHH-HHc-ccCHHHHHHHHHHHHHHHhh
Confidence 12444333 343 35566666677778888775
No 262
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=54.04 E-value=1e+02 Score=39.14 Aligned_cols=173 Identities=14% Similarity=0.198 Sum_probs=102.6
Q ss_pred CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh
Q 007670 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG 114 (594)
Q Consensus 37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~ 114 (594)
.|+-+...+++|..-+.+++-.+|+.++.++|.+-... -++.--+.+|..-++|+.|-...||-+|++..-+. +.
T Consensus 253 ~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~---l~ 329 (1266)
T KOG1525|consen 253 APQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQC---LL 329 (1266)
T ss_pred hHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHH---Hh
Confidence 34446667777777778889999999999999984443 44466788999999999999999999999654322 11
Q ss_pred cchhHH----hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-CC-cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHH
Q 007670 115 ASAFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ-DP-DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGS 188 (594)
Q Consensus 115 ~~~~~~----~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~-~~-i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGS 188 (594)
..|... ...-|-+... |..+-..- ..++..++ .. -+.|.+.|+.-+...+.....++|..++.-+.=
T Consensus 330 ~~~~~~~~~~~~~~l~~~~~---D~~~rir~----~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~Laq 402 (1266)
T KOG1525|consen 330 NNPSIAKASTILLALRERDL---DEDVRVRT----QVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQ 402 (1266)
T ss_pred cCchhhhHHHHHHHHHhhcC---Chhhhhee----eEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 111111 1111111221 22111100 00001011 01 134445566666666667777777766554433
Q ss_pred HH-------hcC-cCcCCchHHHHHHHHhhhcCCcHHHH
Q 007670 189 VI-------GSG-AVDGSGLKGLVSCLLGFLSSQDWAAR 219 (594)
Q Consensus 189 iA-------~a~-~~~~pyf~~lm~~L~e~L~seDw~lR 219 (594)
+- .++ +...+-|.|+-.-|..++-..+.+.|
T Consensus 403 lYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r 441 (1266)
T KOG1525|consen 403 LYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDR 441 (1266)
T ss_pred HHHHHHHhhccCcccccccccccchhHHhhHhhccccHH
Confidence 32 223 44557778888888888877767777
No 263
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=53.84 E-value=20 Score=24.47 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL 129 (594)
.||.+++++||.+...- .+.+|.++|
T Consensus 2 ~vR~~aa~aLg~~~~~~-------a~~~L~~~l 27 (30)
T smart00567 2 LVRHEAAFALGQLGDEE-------AVPALIKAL 27 (30)
T ss_pred HHHHHHHHHHHHcCCHh-------HHHHHHHHh
Confidence 58999999999986544 567777776
No 264
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=53.71 E-value=20 Score=31.72 Aligned_cols=36 Identities=19% Similarity=0.024 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC
Q 007670 139 VGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (594)
Q Consensus 139 ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~ 174 (594)
-++.++|.++|.+-++.+.+++|+++..|.+..+.+
T Consensus 7 H~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~~ 42 (90)
T PF11919_consen 7 HAAVLGLSALVLAFPYDVPPWMPEVLEELARHANDP 42 (90)
T ss_dssp HHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS-
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCCC
Confidence 388999999999999999999999999999888753
No 265
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=52.05 E-value=71 Score=29.95 Aligned_cols=90 Identities=12% Similarity=0.188 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHH-----hhhcC
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSIT-----RNFRD 93 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Iv-----rrLkD 93 (594)
|--.-+.||-.+... ++..+.-++..|..-+.+..|.++.-|+++|-.||+.. .+.-.+.+=...|. ++.-|
T Consensus 17 ~pgy~~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 17 TPGYLYEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred CchHHHHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 555666777777776 55668888999988888777899999999999987665 22233333332221 23233
Q ss_pred C------ChhHHHHHHHHHHhhch
Q 007670 94 K------NSALQATCISTVSSLSP 111 (594)
Q Consensus 94 ~------Ds~VR~Ac~~ALG~LAe 111 (594)
| ...||.+|-+++..|-.
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 3 24699999988877643
No 266
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=51.70 E-value=2.8e+02 Score=32.38 Aligned_cols=97 Identities=20% Similarity=0.275 Sum_probs=60.4
Q ss_pred ccccchHHHHHHHHh-----hhc-----CCChhHHHHHHHHHHhhchhhhcch--hHH-hHHHHHHHHccC-CChhHHHH
Q 007670 75 NLSPYITKIINSITR-----NFR-----DKNSALQATCISTVSSLSPRVGASA--FVT-MLKLLSDALFTE-QDTNAQVG 140 (594)
Q Consensus 75 ~isphLpkIL~~Ivr-----rLk-----D~Ds~VR~Ac~~ALG~LAe~l~~~~--~~~-~lkPL~eaL~~e-q~k~vQ~~ 140 (594)
++-|||..+||.|+. .|- |..=.+|+-+++.++.++......- ... +.+-|..++.+. +.....=|
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 888998888887662 221 1223589999999998888875421 222 677777788654 34445558
Q ss_pred HHHHHHHHHhhc-CCCcchhHHHHHHHHHHHh
Q 007670 141 AALCLAATIDAA-QDPDAGKLGRMEVRLERLL 171 (594)
Q Consensus 141 Aa~ALaavvE~l-~~~i~~yL~~L~~RL~klL 171 (594)
|.-+|.++.--. .-.+.+-|...-.++..-|
T Consensus 361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 361 AIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred HHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 888888776532 2223455555555554443
No 267
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=51.64 E-value=99 Score=38.34 Aligned_cols=143 Identities=11% Similarity=0.144 Sum_probs=99.5
Q ss_pred chHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHccCCCh
Q 007670 59 VRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDT 135 (594)
Q Consensus 59 ~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~~eq~k 135 (594)
+|-.++.-||-+|=.| -+ ..+.||.+++-|.-.+- .||.-.+-|+|-||.+++ .++. |++.+...| -++++
T Consensus 947 vra~~vvTlakmcLah~~L---aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT--am~d~YiP~I~~~L-~Dp~~ 1020 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRL---AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT--AMTDRYIPMIAASL-CDPSV 1020 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH--HHHHHhhHHHHHHh-cCchH
Confidence 4666676677666666 33 34588889999988775 699999999999998883 2222 777777777 67888
Q ss_pred hHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC--cCCchHHHHHHHHhh
Q 007670 136 NAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV--DGSGLKGLVSCLLGF 210 (594)
Q Consensus 136 ~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~--~~pyf~~lm~~L~e~ 210 (594)
.|-.-+..-|+++++. .++.+=+.|+-|++-.|-..+-.++.-+==+||++-++..- |...|-..|=+|.+|
T Consensus 1021 iVRrqt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~~ln~~ 1094 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYIIALNQA 1094 (1529)
T ss_pred HHHHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHH
Confidence 8888899999999984 22334467888877777666777776666688888877543 223444444444443
No 268
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=51.57 E-value=1.2e+02 Score=28.81 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=55.5
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHH-HHHHhcC---CchhhHHHHHHHHHHHHhcCc-C
Q 007670 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVR-LERLLKS---EVFKAKAAGLVVVGSVIGSGA-V 195 (594)
Q Consensus 123 kPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~R-L~klL~s---~~fkaK~alL~aIGSiA~a~~-~ 195 (594)
+-|-.-|....++++|.-|..-|+++++|.+......+ ...+.. |.++++. .+..+|.-++.+|.+-+.+=+ .
T Consensus 41 ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 41 RALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 33334443346888999999999999999997664332 235655 7777753 356788889999998875532 2
Q ss_pred c-CCchHHHHHHH
Q 007670 196 D-GSGLKGLVSCL 207 (594)
Q Consensus 196 ~-~pyf~~lm~~L 207 (594)
. .+|+..+-..|
T Consensus 121 ~~l~~i~~~y~~L 133 (141)
T cd03565 121 PDLTGVVEVYEEL 133 (141)
T ss_pred ccchHHHHHHHHH
Confidence 1 25555444444
No 269
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=51.03 E-value=82 Score=37.72 Aligned_cols=112 Identities=15% Similarity=0.225 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhcCCChh--HHHHHHHHH-HHHHhhc--CC-------CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHH
Q 007670 4 ALKTSVNGLLNKLSDRD--TYSQAAKEL-DSIAATV--DP-------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLS 71 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrD--T~r~A~~eL-D~LA~~L--pp-------e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvla 71 (594)
.+..|-+..+.+|=|.+ |.|+++=|+ -.++.++ ++ .++..++..+.+-++...|+.|--++..+.-++
T Consensus 295 ~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kif 374 (1128)
T COG5098 295 GIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIF 374 (1128)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 34455577777886666 888876544 3355555 22 247789999999999999999999998888887
Q ss_pred hhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh
Q 007670 72 NSH-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF 118 (594)
Q Consensus 72 e~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~ 118 (594)
.-- .--.-=.++..-++|+|+|-.+.||+-+..- ++.-+.+.||
T Consensus 375 dl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl---~SkLL~~HPF 419 (1128)
T COG5098 375 DLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKL---CSKLLMRHPF 419 (1128)
T ss_pred hCcccccchHHHHHHHHHHHhhhhhHHHHHHHHHH---HHHHHhcCCh
Confidence 776 3334567899999999999999999766543 3333444443
No 270
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=50.86 E-value=59 Score=30.95 Aligned_cols=93 Identities=13% Similarity=0.160 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHhhcCC-----CChHHHHHhh--------hhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHH
Q 007670 20 DTYSQAAKELDSIAATVDP-----TLLPTFLSCI--------LSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKII 84 (594)
Q Consensus 20 DT~r~A~~eLD~LA~~Lpp-----e~lp~fLs~L--------~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL 84 (594)
.+...|++.|+.+-++-.+ +..+.|+..+ .....+..+..=..+++.+..+...+ .+..+++-++
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l 116 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFL 116 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888887776432 1122444433 33344455777677999999998777 8888999999
Q ss_pred HHHHhhhcCCCh---hHHHHHHHHHHhhchh
Q 007670 85 NSITRNFRDKNS---ALQATCISTVSSLSPR 112 (594)
Q Consensus 85 ~~IvrrLkD~Ds---~VR~Ac~~ALG~LAe~ 112 (594)
+.|+.++-+++. .-|..+++++..++..
T Consensus 117 ~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 117 SHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 999997766554 3577788888887753
No 271
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=50.16 E-value=1e+02 Score=38.53 Aligned_cols=97 Identities=12% Similarity=0.096 Sum_probs=71.6
Q ss_pred CCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcC-CChhHHHHHHHHHHhhchhhhcc---hhH-HhHHHHH
Q 007670 55 DKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGAS---AFV-TMLKLLS 126 (594)
Q Consensus 55 ~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~~---~~~-~~lkPL~ 126 (594)
-.+.+|-=|.-.|++++.++ --+-.=..+|.+...-|.| +++-+|+=+|..||.|=+...+. +.. ....-|+
T Consensus 569 ~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~ 648 (1387)
T KOG1517|consen 569 IPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLI 648 (1387)
T ss_pred CCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHH
Confidence 34578888888899999888 2222345677888888999 57899999999999998877542 111 1444455
Q ss_pred HHHccCCChhHHHHHHHHHHHHHhhc
Q 007670 127 DALFTEQDTNAQVGAALCLAATIDAA 152 (594)
Q Consensus 127 eaL~~eq~k~vQ~~Aa~ALaavvE~l 152 (594)
..| .++-+.|-.+|.-||-.++.+.
T Consensus 649 ~~L-sD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 649 LLL-SDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHh-cCccHHHHHHHHHHHHHHhccc
Confidence 555 6788889999999999999974
No 272
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.61 E-value=3.8e+02 Score=32.56 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=81.7
Q ss_pred hhcCCChhHHHHHHHHHHhhchhh-hcch-h---HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--CCCcc--hhH
Q 007670 90 NFRDKNSALQATCISTVSSLSPRV-GASA-F---VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA--QDPDA--GKL 160 (594)
Q Consensus 90 rLkD~Ds~VR~Ac~~ALG~LAe~l-~~~~-~---~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l--~~~i~--~yL 160 (594)
.|.-|-+.|..--...||.++..- .+++ . ..+++|++--=+.-.|-+||..||.- ++|.- .++.. +--
T Consensus 138 aiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~l---f~~~fP~~dpd~~~e~m 214 (1005)
T KOG1949|consen 138 AIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALL---FVEAFPIRDPDLHAEEM 214 (1005)
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHH---HHHhccCCCCCccHHHH
Confidence 344444555555556677776655 3333 1 12677765444467789999777654 44442 22222 333
Q ss_pred HHHHH----HHHHHhcCCchhhHHHHHH--------------------HHHHHHh-c-------------Cc--------
Q 007670 161 GRMEV----RLERLLKSEVFKAKAAGLV--------------------VVGSVIG-S-------------GA-------- 194 (594)
Q Consensus 161 ~~L~~----RL~klL~s~~fkaK~alL~--------------------aIGSiA~-a-------------~~-------- 194 (594)
..+|+ -|.+||.++-..++..++- +++-|.. . .|
T Consensus 215 D~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np 294 (1005)
T KOG1949|consen 215 DSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP 294 (1005)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc
Confidence 33444 4778888776655544332 2222110 0 11
Q ss_pred CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 195 VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 195 ~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
...|.|+.++|+|...|.+..-.+|-|+.|.|..|-.
T Consensus 295 ~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 295 LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 1137788889988888888888999999998887754
No 273
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.29 E-value=1.1e+02 Score=36.75 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=92.2
Q ss_pred HhhhhcCCCCCCcchHHHHHHHHHHH--h---hh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc--c
Q 007670 46 SCILSTNSSDKPGVRKECIHVIATLS--N---SH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--S 116 (594)
Q Consensus 46 s~L~e~~ss~kp~~RKaaI~lLGvla--e---~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~--~ 116 (594)
+||.-..+-++..+|--|..+|=.+- + .| .+..-|++=.-.+.+.|+|+=+.||..+...+-..-...=+ +
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 45566677788889988877765441 1 11 23333455556778899999999999888777655433211 3
Q ss_pred hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670 117 AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV 189 (594)
Q Consensus 117 ~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSi 189 (594)
+.+ -+++-+++.|..+.--.|-.+.+-||--+..+ +...+.|..++|++.-+|...+-+++-|.+..|--|
T Consensus 257 ~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 257 PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 322 27777777775444445666666666666553 334567777888888888777888888876655543
No 274
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.11 E-value=5.7e+02 Score=31.10 Aligned_cols=252 Identities=21% Similarity=0.228 Sum_probs=132.3
Q ss_pred HHHHHHHHhhcCCChhHHH--HHHHHHHH-----HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--c
Q 007670 5 LKTSVNGLLNKLSDRDTYS--QAAKELDS-----IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N 75 (594)
Q Consensus 5 Lk~rvl~~L~KLsDrDT~r--~A~~eLD~-----LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~ 75 (594)
+|.-+.++-+-|..||+.. .|+..+-. +++.+.+| |+- |.-.-++ -+.+|+.+-++|=.|-+.. .
T Consensus 109 ~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~D-I~K----lLvS~~~-~~~vkqkaALclL~L~r~spDl 182 (938)
T KOG1077|consen 109 MKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADD-IPK----LLVSGSS-MDYVKQKAALCLLRLFRKSPDL 182 (938)
T ss_pred HHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhh-hHH----HHhCCcc-hHHHHHHHHHHHHHHHhcCccc
Confidence 4555566667777666433 34444433 33433332 332 2222222 3456655555554443333 4
Q ss_pred cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---h---hHHhHH--------HHHHHHc-cCCChhHHHH
Q 007670 76 LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---A---FVTMLK--------LLSDALF-TEQDTNAQVG 140 (594)
Q Consensus 76 isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---~---~~~~lk--------PL~eaL~-~eq~k~vQ~~ 140 (594)
+.| ..-..-|+..|.|.+-.|--|+.-=+-+|+....+. + ...-+. +|.++.. .=+.|=.|..
T Consensus 183 ~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vK 260 (938)
T KOG1077|consen 183 VNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVK 260 (938)
T ss_pred cCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHH
Confidence 433 223445677889999877767666555565555321 0 011111 1222221 1246777777
Q ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhc----CC---chhhHHH-HHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007670 141 AALCLAATIDAAQDPD-AGKLGRMEVRLERLLK----SE---VFKAKAA-GLVVVGSVIGSGAVDGSGLKGLVSCLLGFL 211 (594)
Q Consensus 141 Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~----s~---~fkaK~a-lL~aIGSiA~a~~~~~pyf~~lm~~L~e~L 211 (594)
++..|..+ ..-.|+. ...|..+++|++-..+ +. +.-||.| +.+||.-+++.-.+ ..-+...+..|..||
T Consensus 261 l~rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e-~~ll~~~~~~Lg~fl 338 (938)
T KOG1077|consen 261 LLRLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSE-PELLSRAVNQLGQFL 338 (938)
T ss_pred HHHHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHh
Confidence 77766655 2111211 2344555555555443 11 2225655 44566655554322 344567888888899
Q ss_pred cCCcHHHHHHHHHHHHHHHHHcC--CccchhhhHHHHHHHhcc---hh-HHHHHHhhcCCC
Q 007670 212 SSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLKIFESKR---FD-KMIEAWKQVPDL 266 (594)
Q Consensus 212 ~seDw~lRKaAaDaLg~IA~a~g--d~f~py~~~~m~sLEs~R---fD-K~i~lWk~i~~v 266 (594)
++.+-.+|=-|.|.|..+|+..- |.++-|.+-++.+|..-| .. |+..|-=.+.|+
T Consensus 339 s~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 339 SHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred hcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 88888888888888888888632 566655455556555222 11 155555555554
No 275
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=48.29 E-value=1.5e+02 Score=30.58 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=85.1
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC---CCcc-hhHHHHHHHHHHHhcCC--c---hhhHHHHH-HHHHHHH
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ---DPDA-GKLGRMEVRLERLLKSE--V---FKAKAAGL-VVVGSVI 190 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~---~~i~-~yL~~L~~RL~klL~s~--~---fkaK~alL-~aIGSiA 190 (594)
+..-++..|..-..+++=..+.-++.++++.+- .+.. ......+..++..+.+. . .-=+.|-| -+|.+|.
T Consensus 97 ig~~l~~~L~~~rHrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~~~~~~~iTRRSAGLP~~i~aiL 176 (255)
T PF10350_consen 97 IGELLIEQLLEIRHRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESKGQQKLSITRRSAGLPFLILAIL 176 (255)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcccccccccccccCcHHHHHHHHH
Confidence 444445555444577777788888888888864 2222 33444777777777766 1 12245544 3777777
Q ss_pred hcCcCc-CCchHHHHHHHHhhhcCCcH--------HHHHHHHHHHHHHHHH--cCCccchhhhHHHH-HHHh
Q 007670 191 GSGAVD-GSGLKGLVSCLLGFLSSQDW--------AARKAAAEALWRLAVV--EKDAVPEFKGKCLK-IFES 250 (594)
Q Consensus 191 ~a~~~~-~pyf~~lm~~L~e~L~seDw--------~lRKaAaDaLg~IA~a--~gd~f~py~~~~m~-sLEs 250 (594)
.++... .+.|..+|..|.++...+.- ..|-=|+.+|-.|-.- +++...||+++.+. +++.
T Consensus 177 ~ae~~~~~~ll~~~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~~~l~lai~~ 248 (255)
T PF10350_consen 177 SAEPSNSRPLLHRTMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIEDALILAIKG 248 (255)
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 776553 37888899999998764211 3467788888888764 56889999988884 5554
No 276
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=48.12 E-value=97 Score=35.22 Aligned_cols=98 Identities=14% Similarity=0.145 Sum_probs=65.1
Q ss_pred CCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchh-H-HhHHHHHHHH
Q 007670 54 SDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAF-V-TMLKLLSDAL 129 (594)
Q Consensus 54 s~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~-~-~~lkPL~eaL 129 (594)
+.....|.-++.+||.|+..+ .+..- -.++..+.+.|.++++.||-+.-+||+.|+.++...+. . ....-+.+.|
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l 463 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELL 463 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 345678999999999999988 43222 56788888999999999999999999999999975443 1 1222333333
Q ss_pred ccCCChhHHHHHHHHHHHHHhhc
Q 007670 130 FTEQDTNAQVGAALCLAATIDAA 152 (594)
Q Consensus 130 ~~eq~k~vQ~~Aa~ALaavvE~l 152 (594)
..+.....+..+=++..++...+
T Consensus 464 ~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 464 LLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred HHhhccchhHHHHHHHHHHHHHh
Confidence 32222233334444444554443
No 277
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=46.55 E-value=17 Score=35.47 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=36.7
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH
Q 007670 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (594)
Q Consensus 81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL 160 (594)
+.+.+.+.+=+++.+.=+|++++.++-.+.... ....+-.++..++++.+.-||.+.+-+|..+.-.-++...+||
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~----~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~l 194 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKE----DFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEFL 194 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGC----HHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc----CHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 444555555555555555555555555555441 1123333334433555555555555555555555444333444
Q ss_pred H
Q 007670 161 G 161 (594)
Q Consensus 161 ~ 161 (594)
.
T Consensus 195 ~ 195 (213)
T PF08713_consen 195 Q 195 (213)
T ss_dssp H
T ss_pred H
Confidence 3
No 278
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.62 E-value=1.3e+02 Score=37.01 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=73.6
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc-----hhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS-----AFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (594)
Q Consensus 80 LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-----~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~ 153 (594)
+.+|+--.++.|.+++-.+|=++++.+.--...+... |.+ .+-+++++-+ ...|+-+-..|+.||..+++-++
T Consensus 801 v~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~-~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 801 VLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECL-LCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHH-hcCchHHHHHHHHHHHHHHHHhh
Confidence 5678888889999999999999999888777777543 333 3777888888 57788888899999999999999
Q ss_pred CCcch-hHHHHHHHHHHHhc
Q 007670 154 DPDAG-KLGRMEVRLERLLK 172 (594)
Q Consensus 154 ~~i~~-yL~~L~~RL~klL~ 172 (594)
|-+.. .+..++|++-.++.
T Consensus 880 DFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 88754 56777888776663
No 279
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=45.55 E-value=91 Score=29.81 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=39.8
Q ss_pred HHHHHHHhhhc--CCChhHHHHHHHHHHhhchhhhcchh-HHhHHHHHHHHcc-CCChh-HHHHHHHHHHH
Q 007670 82 KIINSITRNFR--DKNSALQATCISTVSSLSPRVGASAF-VTMLKLLSDALFT-EQDTN-AQVGAALCLAA 147 (594)
Q Consensus 82 kIL~~IvrrLk--D~Ds~VR~Ac~~ALG~LAe~l~~~~~-~~~lkPL~eaL~~-eq~k~-vQ~~Aa~ALaa 147 (594)
.+++.+..... -.+..+..|+++.+..-|-.-..-.+ .....++++.+.. .++.. ++..|+.+|.+
T Consensus 86 g~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 86 GFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp THHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 44444454454 46667888888888776654421122 2366677777763 44555 78888888876
No 280
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.99 E-value=1.2e+02 Score=36.61 Aligned_cols=124 Identities=14% Similarity=0.128 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHH
Q 007670 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQAT 101 (594)
Q Consensus 22 ~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~A 101 (594)
.+..++.+-.++...|-.+- +-|..|++++. +-.++.-+++.|+.|-.++-.+|--.+-+-+|..|+-=-+..||.|
T Consensus 409 K~aivd~Ii~iie~~pdsKe-~~L~~LCefIE--Dce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaa 485 (865)
T KOG1078|consen 409 KRAIVDAIIDIIEENPDSKE-RGLEHLCEFIE--DCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAA 485 (865)
T ss_pred HHHHHHHHHHHHHhCcchhh-HHHHHHHHHHH--hccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHH
Confidence 34444555555554333222 22455555542 3356777777777777777666666677777777777777778888
Q ss_pred HHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670 102 CISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATID 150 (594)
Q Consensus 102 c~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE 150 (594)
++-||+.++.... .+-..+..-|--.+ .+++--+-..|..+|-.+-+
T Consensus 486 Av~alaKfg~~~~-~l~~sI~vllkRc~-~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 486 AVSALAKFGAQDV-VLLPSILVLLKRCL-NDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHHHHHHHhcCCC-CccccHHHHHHHHh-cCchHHHHHHHHHHHHHhhh
Confidence 8877777772220 00011222222222 45666666666666655553
No 281
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.47 E-value=4.2e+02 Score=32.59 Aligned_cols=193 Identities=12% Similarity=0.161 Sum_probs=92.6
Q ss_pred HhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHH---Hhh---h-----ccccchHHHHHHHHhhhcCCChh----
Q 007670 33 AATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATL---SNS---H-----NLSPYITKIINSITRNFRDKNSA---- 97 (594)
Q Consensus 33 A~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl---ae~---h-----~isphLpkIL~~IvrrLkD~Ds~---- 97 (594)
=.+|+++++-.+++.+....+++-+.+-.+|-.++.-+ ++. + .++||+..++.-+++.++=|++.
T Consensus 488 R~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~Eney 567 (960)
T KOG1992|consen 488 RNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEY 567 (960)
T ss_pred cccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHH
Confidence 34555655555556665666665555666665555544 222 1 78899999988888888777742
Q ss_pred HHHHHHHHHHhhchhhhcchhHHhHHHHHH---HHcc-CCChhHH----HHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670 98 LQATCISTVSSLSPRVGASAFVTMLKLLSD---ALFT-EQDTNAQ----VGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~e---aL~~-eq~k~vQ----~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k 169 (594)
+-+|....++.+=+-+.. -...++.-|.+ .... -.+|..- .+-|.++-+.+++-+..+...-..|+|-+..
T Consensus 568 lmKaImRii~i~~~~i~p-~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~ 646 (960)
T KOG1992|consen 568 LMKAIMRIISILQSAIIP-HAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQT 646 (960)
T ss_pred HHHHHHHHHHhCHHhhhh-hhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 222222222222111100 00001111111 1100 0111111 2336666666665444444444556666666
Q ss_pred HhcCCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 170 LLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 170 lL~s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
.|..+-+.--+-++..++=+... ++..++.+ ++.+...|.-.-|..++ -+-+|-++-
T Consensus 647 Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~---~~l~~~lLsp~lW~r~g-NipalvrLl 704 (960)
T KOG1992|consen 647 ILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSY---SPLFPPLLSPNLWKRSG-NIPALVRLL 704 (960)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhH---HHHHHHhcCHHHHhhcC-CcHHHHHHH
Confidence 66666555556666666666533 33223233 33333334445577443 333444433
No 282
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=43.01 E-value=5.3e+02 Score=28.98 Aligned_cols=207 Identities=13% Similarity=0.142 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCC-cchHHHHHHHHHHHhhh-ccccchH-HHHHHHHhhhcCCChhHH
Q 007670 23 SQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKP-GVRKECIHVIATLSNSH-NLSPYIT-KIINSITRNFRDKNSALQ 99 (594)
Q Consensus 23 r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp-~~RKaaI~lLGvlae~h-~isphLp-kIL~~IvrrLkD~Ds~VR 99 (594)
--|+++|-..+...+.+.++.+-.+..+-....+| .+|++++.+|-.++... ....-+. .+...|...-.|+|-..|
T Consensus 8 ~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~d~~~~ 87 (464)
T PF11864_consen 8 IKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDDDFDLR 87 (464)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCchhHHHH
Confidence 34566666667777887898888888888766666 48999999999999888 3233222 222333333223333445
Q ss_pred HHHHHHHHhhchhhhc-----chhH-HhHHHHHHHHcc----------CC--Chh---HHHHHHHHHHHHHhhc-----C
Q 007670 100 ATCISTVSSLSPRVGA-----SAFV-TMLKLLSDALFT----------EQ--DTN---AQVGAALCLAATIDAA-----Q 153 (594)
Q Consensus 100 ~Ac~~ALG~LAe~l~~-----~~~~-~~lkPL~eaL~~----------eq--~k~---vQ~~Aa~ALaavvE~l-----~ 153 (594)
-.++.+|..=...+.. .++. ..+.+++.+.-. .+ +.. .+.+.+.-|=.++-++ .
T Consensus 88 l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~ 167 (464)
T PF11864_consen 88 LEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFN 167 (464)
T ss_pred HHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCC
Confidence 4444444433333311 0221 266666643310 00 000 0222222333333332 1
Q ss_pred CCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 154 DPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 154 ~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
....+.+..|+.+++.+-+.. +-..=.+.|..+.+|+.-|..-...+..++..|-...... .+.+.+-.+|.-|+.
T Consensus 168 ~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~ 244 (464)
T PF11864_consen 168 YLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLK 244 (464)
T ss_pred CCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHc
Confidence 122346677777777764333 2222246777888877666554567777777777665444 444556666666653
No 283
>PF02465 FliD_N: Flagellar hook-associated protein 2 N-terminus; InterPro: IPR003481 The flagellar hook-associated protein 2 (HAP2 or FliD) is the capping protein for the flagella and forms the distal end of the flagella. The protein plays a role in mucin specific adhesion of the bacteria [].; GO: 0009296 flagellum assembly, 0009288 bacterial-type flagellum
Probab=42.38 E-value=86 Score=27.40 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=47.7
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHHHH
Q 007670 435 EDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISY 488 (594)
Q Consensus 435 ~~l~~ir~QL~qiE~qQs~lldllQ~Fmg~s~~~m~sLe~RV~gLE~aldeis~ 488 (594)
=|+..|=+||.++|++.-..|+-=+.-...-++.+..|.+.+..|--+++.+..
T Consensus 4 ~D~~~lv~~l~~~e~~~~~~l~~~~~~~~~k~sa~~~l~s~l~~l~~~~~~L~~ 57 (99)
T PF02465_consen 4 IDTESLVDQLMQAERAPIDRLQQKKTSLEWKQSAYGSLNSKLSTLQSALSDLNS 57 (99)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 378889999999999999888888888999999999999999999988877754
No 284
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=41.99 E-value=71 Score=33.32 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHHHHHHhhhcCcc
Q 007670 437 LSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRM 497 (594)
Q Consensus 437 l~~ir~QL~qiE~qQs~lldllQ~Fmg~s~~~m~sLe~RV~gLE~aldeis~dla~ssgr~ 497 (594)
+..|-+|+.||.||=.-++||||---+=+-+...-|+.=+.-|+.++|+.++ ++..-|-+
T Consensus 53 leqVnnQIqqlQnQaq~yqNmlqNta~l~~~iw~Ql~~~l~kl~~l~d~aqg-~afdvg~i 112 (252)
T COG5314 53 LEQVNNQIQQLQNQAQQYQNMLQNTAALPFYIWGQLSQVLNKLQNLQDQAQG-YAFDVGSI 112 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhH-HHhhhhhH
Confidence 3345555555555555677788877788888888999999999999999765 55554534
No 285
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=41.66 E-value=1e+03 Score=31.93 Aligned_cols=189 Identities=12% Similarity=0.043 Sum_probs=107.6
Q ss_pred CCCCCcchHHHHHHHHHHHhhh----------ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc---chhH
Q 007670 53 SSDKPGVRKECIHVIATLSNSH----------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA---SAFV 119 (594)
Q Consensus 53 ss~kp~~RKaaI~lLGvlae~h----------~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~---~~~~ 119 (594)
.+.+...+-.||..|--+|--+ +-.-+|..+. .|++.. .+..||+..+..+.+|-..... .+-.
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe-~im~~s--~~~eVrE~ILeCv~qmI~s~~~nIkSGWk 1223 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV-IVMRKS--NAVEIRELIIRCVSQMVLSRVNNVKSGWK 1223 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH-HHHHhc--CchHHHHHHHHHHHHHHHHHHhhhhcCcH
Confidence 3445667777777766665433 1122343333 333333 4558999999999987655532 1222
Q ss_pred HhHHHHHHHHccCCChhHHHHHHHHHHHHHhh-cCCC---cchhHHHHHHHHHHHhcCCch-hhHHHHHHHHHH----HH
Q 007670 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDA-AQDP---DAGKLGRMEVRLERLLKSEVF-KAKAAGLVVVGS----VI 190 (594)
Q Consensus 120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~-l~~~---i~~yL~~L~~RL~klL~s~~f-kaK~alL~aIGS----iA 190 (594)
.++.-|--+. .+.++.+-.-|+-.+..++.. +... ....+..++..|.+.-++..+ ..--.+++.+.. ++
T Consensus 1224 tIF~VLs~aa-~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1224 SMFMVFTTAA-YDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHH-hCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 3444444443 456666666788888777654 2211 124677777777777755532 111112222221 11
Q ss_pred hc-----------------------CcC----cC------CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCcc
Q 007670 191 GS-----------------------GAV----DG------SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (594)
Q Consensus 191 ~a-----------------------~~~----~~------pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f 237 (594)
.. +.. +. .+.=.++..|.+...+++-++|+.|+++|-.+-..+|..|
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 10 000 00 1222355666666678899999999999999999999999
Q ss_pred chh-hhHHH
Q 007670 238 PEF-KGKCL 245 (594)
Q Consensus 238 ~py-~~~~m 245 (594)
.|- -..|.
T Consensus 1383 s~~~W~~if 1391 (1780)
T PLN03076 1383 SLPLWERVF 1391 (1780)
T ss_pred CHHHHHHHH
Confidence 983 34444
No 286
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.13 E-value=1.1e+02 Score=29.61 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=46.5
Q ss_pred HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 42 p~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
+.+...+.+...++++..||.++.++-- ++...+++.++..+...+.|++--||.|..++|..++..-
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~----~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLR----YIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTT----HGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH----HHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 3345555566667777888877655421 2333777888888888888888888888888887777665
No 287
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=40.49 E-value=4.6e+02 Score=27.52 Aligned_cols=89 Identities=10% Similarity=0.120 Sum_probs=54.0
Q ss_pred ccccchHHHHHHHH--------hhhcCCCh--hHHHHHHHHHHhhchhhhcc--hhHHhHHHHHHHHccCCChhHHHHHH
Q 007670 75 NLSPYITKIINSIT--------RNFRDKNS--ALQATCISTVSSLSPRVGAS--AFVTMLKLLSDALFTEQDTNAQVGAA 142 (594)
Q Consensus 75 ~isphLpkIL~~Iv--------rrLkD~Ds--~VR~Ac~~ALG~LAe~l~~~--~~~~~lkPL~eaL~~eq~k~vQ~~Aa 142 (594)
++.-.|+.|+..+. +.+.|++. -||.||+.||+.++..-... ..+.+++.++...+..++..+..
T Consensus 96 ~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~--- 172 (249)
T PF06685_consen 96 FITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWG--- 172 (249)
T ss_pred hhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHH---
Confidence 44455666665554 56777775 48999999999999887543 33348899988865433333222
Q ss_pred HHHHHHHhhcCCCcchhHHHHHHHHHHHhcC
Q 007670 143 LCLAATIDAAQDPDAGKLGRMEVRLERLLKS 173 (594)
Q Consensus 143 ~ALaavvE~l~~~i~~yL~~L~~RL~klL~s 173 (594)
.+|.++-+ =|...|++-+-+++..
T Consensus 173 ----~Lv~~~~d---L~~~EL~~~I~~~f~~ 196 (249)
T PF06685_consen 173 ----SLVADICD---LYPEELLPEIRKAFED 196 (249)
T ss_pred ----HHHHHHHh---cCHHHhHHHHHHHHHc
Confidence 22211111 2555677777777643
No 288
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=40.17 E-value=56 Score=29.60 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHhhHH-----HHHHHHHHhccchhhhHHHhhhhhHHHHHHHH
Q 007670 438 STIRNQLVQIEQQQSSL-----LDLLQRFIGRSESGMQSLETRVLGLELALDEI 486 (594)
Q Consensus 438 ~~ir~QL~qiE~qQs~l-----ldllQ~Fmg~s~~~m~sLe~RV~gLE~aldei 486 (594)
....+.|.+||.+-.+| +.-||.-|+.-.--|..|+.++.|+++.++=+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33489999999999888 88899999998888999999998888877643
No 289
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=38.89 E-value=64 Score=30.97 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhc
Q 007670 46 SCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLS 110 (594)
Q Consensus 46 s~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LA 110 (594)
..+.+...+++...||.|+-.+...... ..+++.++..+.+.+.|++--||.|..++|..++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~ 169 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYG 169 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
No 290
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=38.50 E-value=4.4e+02 Score=30.59 Aligned_cols=207 Identities=19% Similarity=0.120 Sum_probs=113.0
Q ss_pred HHHHHhhcCC-ChhHHHHHHHHHHHHHhhcCCCChHHH-----HHhhhhcCCCCCCcchHHHHHHHHHHHh-hh------
Q 007670 8 SVNGLLNKLS-DRDTYSQAAKELDSIAATVDPTLLPTF-----LSCILSTNSSDKPGVRKECIHVIATLSN-SH------ 74 (594)
Q Consensus 8 rvl~~L~KLs-DrDT~r~A~~eLD~LA~~Lppe~lp~f-----Ls~L~e~~ss~kp~~RKaaI~lLGvlae-~h------ 74 (594)
.++-+|+|+. --|-+|..+..|+.|-.|-.. .-..+ |..+.=.....+|..=++|-++||.++- ++
T Consensus 224 ~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee-t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrr 302 (832)
T KOG3678|consen 224 GVILNLAKEREPVELARSVAGILEHMFKHSEE-TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRR 302 (832)
T ss_pred hhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH-HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHH
Confidence 3455666653 345666777777666554221 11111 2222222344568888999999999732 22
Q ss_pred ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH------HhHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007670 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV------TMLKLLSDALFTEQDTNAQVGAALCLAAT 148 (594)
Q Consensus 75 ~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~------~~lkPL~eaL~~eq~k~vQ~~Aa~ALaav 148 (594)
++....+.-| .-.-..-|-..|--+|-|++.|+..-.-++++ .++.||+..+ ||.- .++
T Consensus 303 mveKr~~EWL---F~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~----DP~~-------FAR- 367 (832)
T KOG3678|consen 303 MVEKRAAEWL---FPLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASL----DPGR-------FAR- 367 (832)
T ss_pred HHHhhhhhhh---hhhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhcc----Ccch-------hhh-
Confidence 3333332222 11112237788888888999888765322221 3888888887 2321 111
Q ss_pred HhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHH----HHHHhcCcCcCCchHH--HHHHHHhhhcCCcHHHHHHH
Q 007670 149 IDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVV----GSVIGSGAVDGSGLKG--LVSCLLGFLSSQDWAARKAA 222 (594)
Q Consensus 149 vE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aI----GSiA~a~~~~~pyf~~--lm~~L~e~L~seDw~lRKaA 222 (594)
+.-++ --..-+.-++||+-+|.+....++ .++|. -+.+.....-.-.|.. .|+.|.+..++.|-..-|-|
T Consensus 368 -D~hd~-aQG~~~d~LqRLvPlLdS~R~EAq--~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfA 443 (832)
T KOG3678|consen 368 -DAHDY-AQGRGPDDLQRLVPLLDSNRLEAQ--CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFA 443 (832)
T ss_pred -hhhhh-hccCChHHHHHhhhhhhcchhhhh--hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHH
Confidence 11111 012234556778888877665543 22221 1112111111233443 58889998899888888889
Q ss_pred HHHHHHHHHHcC
Q 007670 223 AEALWRLAVVEK 234 (594)
Q Consensus 223 aDaLg~IA~a~g 234 (594)
-++|-.|...+.
T Consensus 444 seALtviGEEVP 455 (832)
T KOG3678|consen 444 SEALTVIGEEVP 455 (832)
T ss_pred HHHHHHhccccC
Confidence 999988877554
No 291
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.38 E-value=99 Score=39.84 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=59.9
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
++++...+.-+..+..+..|-.+|..+-.+..-- ...++||.++|++.+.+.|-|-.|-..|.+.+-++=+.+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~l 1613 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVL 1613 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 8888888877766666677777777777776555 777999999999999999999999999998777666555
No 292
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=37.88 E-value=72 Score=30.38 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=48.0
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhHHHHHHhh
Q 007670 202 GLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDKMIEAWKQ 262 (594)
Q Consensus 202 ~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK~i~lWk~ 262 (594)
.+-..+..+|.+.|-.++|.|.+||.+- + +.+.||++.+.+.++.-+|-..+..|..
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~----k~~~l~pY~d~L~~Lldd~~frdeL~~f~~ 74 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTW----KDPYLTPYKDNLENLLDDKTFRDELTTFNL 74 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHhHHHHHHHHcCcchHHHHHHhhcc
Confidence 3446677889999999999999999874 4 5899999888899999999888887774
No 293
>PF05536 Neurochondrin: Neurochondrin
Probab=37.47 E-value=7.1e+02 Score=28.86 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=67.0
Q ss_pred hHHHHHHHHHHhhchhhhcc-----h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH--HHHHHH
Q 007670 97 ALQATCISTVSSLSPRVGAS-----A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR--MEVRLE 168 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~~~-----~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~--L~~RL~ 168 (594)
.-++-++--|++|+. ++ + +..-++.|++.+....+..+..=+..||..++ ..++.. .+|-. -++.|+
T Consensus 72 ~~~~LavsvL~~f~~---~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~-~aLl~~g~v~~L~ 146 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCR---DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGA-KALLESGAVPALC 146 (543)
T ss_pred HHHHHHHHHHHHHcC---ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhH-HHHHhcCCHHHHH
Confidence 346666655666555 22 2 33478888888854334366777888999988 333222 22222 444555
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcCc-C----cCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 169 RLLKSEVFKAKAAGLVVVGSVIGSGA-V----DGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 169 klL~s~~fkaK~alL~aIGSiA~a~~-~----~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
..+.+..+ .+..++.++..+.+..+ . ....+..+++.|..-.....-..+-.+++.|+.+-..
T Consensus 147 ei~~~~~~-~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~ 214 (543)
T PF05536_consen 147 EIIPNQSF-QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR 214 (543)
T ss_pred HHHHhCcc-hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence 55544332 34445555554443222 1 1244445555555544433333334566666666543
No 294
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=36.77 E-value=3.6e+02 Score=32.08 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=110.2
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccc----hHHHHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPY----ITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isph----LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
.+.|+-+..+. +.-.+..|+=.+.-.-.+-..+ ....| --+..-+..-+++ |.-++.|+|.-+-.++.
T Consensus 330 ~~ellf~~~sl-~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k--d~~~~aaa~l~~~s~sr 406 (678)
T KOG1293|consen 330 TTELLFICASL-AASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK--DHDFVAAALLCLKSFSR 406 (678)
T ss_pred HHHHHHHHHHH-hhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc--cHHHHHHHHHHHHHHHH
Confidence 56666666654 3335556655444333222222 11122 2222233334443 34567777766665554
Q ss_pred hhh--c-chhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH-HHHHHHHHhcCCchhhHHHHHHHH
Q 007670 112 RVG--A-SAFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR-MEVRLERLLKSEVFKAKAAGLVVV 186 (594)
Q Consensus 112 ~l~--~-~~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~-L~~RL~klL~s~~fkaK~alL~aI 186 (594)
-+- + .+.. -+..||+..| .+++--+|..+-+||-.+|=.-.+.---++.. .+..+.+.+..+.+-.+.-.+-++
T Consensus 407 sV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~L 485 (678)
T KOG1293|consen 407 SVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVL 485 (678)
T ss_pred HHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHH
Confidence 441 1 2222 2788888888 67888899999999998865332211123322 667888999888888887777777
Q ss_pred HHHHhcCcC-c--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 187 GSVIGSGAV-D--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 187 GSiA~a~~~-~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
.-+.--..+ + .+|-.--+.-|.++..++||++.-++...|--+.
T Consensus 486 r~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 486 RHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 765533333 2 3665556788888889999998877776665543
No 295
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.76 E-value=9.5e+02 Score=30.12 Aligned_cols=81 Identities=14% Similarity=0.021 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc----CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS----GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 158 ~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a----~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
.++.++++|-..+|.+++...+-.+|.++....-. ...+.|-.-+.=|.+++++..+|--+=--|+.+|..+....
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~s 878 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYS 878 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHh
Confidence 46788999999999999888888888877763322 12234777777788888888777655566788888888776
Q ss_pred CCccc
Q 007670 234 KDAVP 238 (594)
Q Consensus 234 gd~f~ 238 (594)
||+++
T Consensus 879 gDFv~ 883 (1014)
T KOG4524|consen 879 GDFVA 883 (1014)
T ss_pred hhHHH
Confidence 76443
No 296
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=36.65 E-value=65 Score=33.82 Aligned_cols=121 Identities=19% Similarity=0.247 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhhchhhhcchh-HHhHHHHHHHHcc--------CCCh----------hHHHHHHHHHHHHH--hhc---
Q 007670 97 ALQATCISTVSSLSPRVGASAF-VTMLKLLSDALFT--------EQDT----------NAQVGAALCLAATI--DAA--- 152 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~~~~~-~~~lkPL~eaL~~--------eq~k----------~vQ~~Aa~ALaavv--E~l--- 152 (594)
.+|+=+..+++.++-++-=..+ ..+..|+++.|++ .+|+ .-|.=|.-||.+++ |+=
T Consensus 81 ~lREnalV~laNisgqLdLs~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NVDl 160 (257)
T PF12031_consen 81 QLRENALVTLANISGQLDLSDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNVDL 160 (257)
T ss_pred HHhhcceEeeeeeeeeeecccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCcce
Confidence 4566666666667666621112 2488999999972 2222 23555666666653 221
Q ss_pred --CCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcCc---CCchHHHHHHHHhhhcCCcHH
Q 007670 153 --QDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAVD---GSGLKGLVSCLLGFLSSQDWA 217 (594)
Q Consensus 153 --~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~~---~pyf~~lm~~L~e~L~seDw~ 217 (594)
-.++-..+.+|+..|.++|..+ +...+..++..+..++++...+ ..+-...|..|+.|+.+-+-.
T Consensus 161 iLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 161 ILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQN 231 (257)
T ss_pred eeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 1222346888999999999877 6667899999999988776553 255566788999998765544
No 297
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=36.56 E-value=1.6e+02 Score=26.14 Aligned_cols=56 Identities=13% Similarity=-0.063 Sum_probs=44.3
Q ss_pred CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcch
Q 007670 198 SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRF 253 (594)
Q Consensus 198 pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~Rf 253 (594)
.++..+|..|..-|.+.+|-..--|+..|-++....|+.|..++.+-.-..+-+||
T Consensus 33 ~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~ 88 (115)
T cd00197 33 VGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKF 88 (115)
T ss_pred ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHh
Confidence 45677899999999999999998999999999999998888776555444555554
No 298
>COG4889 Predicted helicase [General function prediction only]
Probab=35.31 E-value=31 Score=42.20 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=22.9
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~ 154 (594)
+-+|+|+|||++..++ -.+.||+++++.+.+
T Consensus 730 ITkPiFdALFa~~~qN---Pvsqam~kmv~~l~~ 760 (1518)
T COG4889 730 ITKPIFDALFAENIQN---PVSQAMDKMVDKLSD 760 (1518)
T ss_pred hhhhHHHHHhhhcccC---hHHHHHHHHHHHHhh
Confidence 8899999999765222 246678888888743
No 299
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=33.11 E-value=3.5e+02 Score=25.18 Aligned_cols=105 Identities=10% Similarity=0.176 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------ccc--cchHHHHHHHHhhhcCC
Q 007670 23 SQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLS--PYITKIINSITRNFRDK 94 (594)
Q Consensus 23 r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------~is--phLpkIL~~IvrrLkD~ 94 (594)
...++..|.+-.. +..-...+.+|...+.+.+|.+--.||.+|..|+.-| .++ .+|..|...+...-.++
T Consensus 24 ~~~l~icD~i~~~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~ 101 (140)
T PF00790_consen 24 SLILEICDLINSS--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDP 101 (140)
T ss_dssp HHHHHHHHHHHTS--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCc
Confidence 3445566655554 4345556667777777788888999999999985555 222 23444444444333333
Q ss_pred ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHH
Q 007670 95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDAL 129 (594)
Q Consensus 95 Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL 129 (594)
...||+-+...|...+..+...+...++.-+...|
T Consensus 102 ~~~Vk~k~l~ll~~W~~~f~~~~~~~~i~~~y~~L 136 (140)
T PF00790_consen 102 ETPVKEKILELLQEWAEAFKSDPELSLIQDTYKRL 136 (140)
T ss_dssp HSHHHHHHHHHHHHHHHHTTTSTTGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCCchHHHHHHHHH
Confidence 23399999988888888884444444444444444
No 300
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=32.66 E-value=1e+02 Score=27.14 Aligned_cols=60 Identities=13% Similarity=0.250 Sum_probs=45.7
Q ss_pred CCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChh--HHHHHHHHHHhhchhh
Q 007670 54 SDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSA--LQATCISTVSSLSPRV 113 (594)
Q Consensus 54 s~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~--VR~Ac~~ALG~LAe~l 113 (594)
.+.+..|..|-.+|+.+|.-| .-...-++|+..+.+.|.||... .+=-|..+|..|....
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~ 80 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEA 80 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999888 44445678999999999998864 4666666776665544
No 301
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=31.54 E-value=1.5e+02 Score=26.49 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=33.6
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHH
Q 007670 435 EDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEI 486 (594)
Q Consensus 435 ~~l~~ir~QL~qiE~qQs~lldllQ~Fmg~s~~~m~sLe~RV~gLE~aldei 486 (594)
.-..-|++.+.+++.+...|-..||. +.-+|..|..||.+++++
T Consensus 42 ~~~~~l~~~~~~l~~k~~~l~~~l~~--------Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 42 DIAAGLEKNLEDLNQKYEELQPYLQQ--------IDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 44566788888888888777666664 678999999999887654
No 302
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=31.39 E-value=16 Score=39.56 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHHHHHHhhhcCccc
Q 007670 432 KDCEDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMT 498 (594)
Q Consensus 432 ~~~~~l~~ir~QL~qiE~qQs~lldllQ~Fmg~s~~~m~sLe~RV~gLE~aldeis~dla~ssgr~~ 498 (594)
-+++||..||+-|.-||-.+.+| +.=+++-..-|..|+++...|+.+|+++.-+|.--++.+.
T Consensus 25 ~s~GDLs~I~eRLsaLEssv~sL----~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~ 87 (326)
T PF04582_consen 25 TSPGDLSPIRERLSALESSVASL----SDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVT 87 (326)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999998876 3446666666777777777777777777666665444444
No 303
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=31.18 E-value=3.7e+02 Score=31.87 Aligned_cols=69 Identities=17% Similarity=0.101 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhcCCC--cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC
Q 007670 138 QVGAALCLAATIDAAQDP--DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS 213 (594)
Q Consensus 138 Q~~Aa~ALaavvE~l~~~--i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~s 213 (594)
+-.|.--|.++|+.+.+. +.+.+..|-|++-.+|++....+-.++ +.+..-.+-|=+.+++.|++++..
T Consensus 380 ~p~aNF~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sL-------ia~~~rl~s~q~~~l~~Li~a~~~ 450 (650)
T KOG2188|consen 380 HPIANFPLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGVVASL-------IAASARLGSYQDKMLQQLIQAFHA 450 (650)
T ss_pred CccccchHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchHhHHH-------HHHHHhhchhHHHHHHHHHHHHhc
Confidence 336667799999998743 356889999999999988754432222 222222234445555666655543
No 304
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=30.89 E-value=4.8e+02 Score=27.33 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=23.9
Q ss_pred HHHHHhcCCch--hhHHHHHHHHHHHHhcCcCc
Q 007670 166 RLERLLKSEVF--KAKAAGLVVVGSVIGSGAVD 196 (594)
Q Consensus 166 RL~klL~s~~f--kaK~alL~aIGSiA~a~~~~ 196 (594)
.|.+++++++. -+|.+++.+++.++..+...
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~ 147 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPIS 147 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence 46667777743 37999999999999888664
No 305
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.67 E-value=2.6e+02 Score=35.36 Aligned_cols=102 Identities=23% Similarity=0.221 Sum_probs=73.6
Q ss_pred HHHHHhhcCCChh--HHHHHHHHHHH-H-HhhcC-CC------ChHH-HHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-
Q 007670 8 SVNGLLNKLSDRD--TYSQAAKELDS-I-AATVD-PT------LLPT-FLSCILSTNSSDKPGVRKECIHVIATLSNSH- 74 (594)
Q Consensus 8 rvl~~L~KLsDrD--T~r~A~~eLD~-L-A~~Lp-pe------~lp~-fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h- 74 (594)
+-|..|-.|=|.+ |.|.|+-++-. + +..+. ++ .++- |+..|.+....-.+++|-.++..+.-++..|
T Consensus 312 ~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s 391 (1251)
T KOG0414|consen 312 RQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHS 391 (1251)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccC
Confidence 3344555555555 66666544322 2 22232 22 1444 8889988888889999999999999999999
Q ss_pred ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSSL 109 (594)
Q Consensus 75 ~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L 109 (594)
.--....+++.-+++||.|-.+.||..+..=+.-|
T Consensus 392 ~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~ 426 (1251)
T KOG0414|consen 392 IPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSL 426 (1251)
T ss_pred CCccHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 44457999999999999999999998877655444
No 306
>PF09268 Clathrin-link: Clathrin, heavy-chain linker; InterPro: IPR015348 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the core motif for the alpha-helical zigzag linker region connecting the conserved N-terminal beta-propeller region to the C-terminal alpha-alpha-superhelical region in clathrin heavy chains []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 1C9I_A 1BPO_B 1C9L_A 1UTC_B 3GD1_I 3GC3_B 2XZG_A 2XZH_A.
Probab=30.31 E-value=26 Score=24.09 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=16.6
Q ss_pred HHHHHHHhhhcCCChhHHHHH
Q 007670 82 KIINSITRNFRDKNSALQATC 102 (594)
Q Consensus 82 kIL~~IvrrLkD~Ds~VR~Ac 102 (594)
.|+|+|...|++||-.+|=|.
T Consensus 3 ~IVpyi~~~L~N~~LAl~lA~ 23 (24)
T PF09268_consen 3 NIVPYILNTLQNPDLALRLAS 23 (24)
T ss_dssp THHHHHHHTT--HHHHHHHHH
T ss_pred cchhHHHhccCCHHHHHHHhc
Confidence 689999999999999888664
No 307
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=29.56 E-value=7e+02 Score=28.30 Aligned_cols=64 Identities=9% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhcC--CCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhc
Q 007670 21 TYSQAAKELDSIAATVD--PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFR 92 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lp--pe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLk 92 (594)
+.|.|.|-+-..-.+.| ++. |..-|.++. ..+..+|+.||+-|-..|.+ ..++++.+.+++.|.
T Consensus 40 ~k~lasq~ip~~fk~fp~la~~a~da~~d~~e----d~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 40 EKRLASQFIPRFFKHFPSLADEAIDAQLDLCE----DDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHHHHHHHHHhhCchhhhHHHHhhhcccc----ccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence 55666666666666655 222 666565554 46778999999999999998 677888888888886
No 308
>PF14868 DUF4487: Domain of unknown function (DUF4487)
Probab=28.86 E-value=2e+02 Score=33.60 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhhhcCCC
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRNFRDKN 95 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~IvrrLkD~D 95 (594)
+...-+..+..+.+.+.|+.+--.+.++..... ++....|-+...-|+.+.... .-.+-+|.++....-.|.|.+
T Consensus 457 ~~~~lL~l~~~~~~~l~~~~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~ 536 (559)
T PF14868_consen 457 TLSLLLSLLSFFIQLLDPQLIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRH 536 (559)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCc
Confidence 334445555667777888888888888877763 333456666666777776554 333557777777788899999
Q ss_pred hhHHHHHHHHHHhhchhh
Q 007670 96 SALQATCISTVSSLSPRV 113 (594)
Q Consensus 96 s~VR~Ac~~ALG~LAe~l 113 (594)
-.|++-+++|.|.+|+..
T Consensus 537 Wll~q~ALeAF~~FAe~T 554 (559)
T PF14868_consen 537 WLLHQHALEAFGQFAERT 554 (559)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 999999999999999976
No 309
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.74 E-value=7.1e+02 Score=27.99 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=97.7
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH-hcCcCc-CC
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI-GSGAVD-GS 198 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA-~a~~~~-~p 198 (594)
.++=|+--| ++-+-++-.-|.+-|-..+-+-++.....+..|++.+..+.-..++.++.+++.++-.++ ..+.+- .|
T Consensus 59 tlkeLl~ql-kHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQL-KHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhh-cCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 455555555 455555665666666666655233334467788889999988889999999888877766 334343 59
Q ss_pred chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHH----HHHhcchhH
Q 007670 199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK----IFESKRFDK 255 (594)
Q Consensus 199 yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~----sLEs~RfDK 255 (594)
.+..+|+.+.-.++.---..|--++-.|..++...++.|.-+...++. .++..+|++
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~i~~~~~~~ 198 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDVISKLQFYK 198 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999998888888889999999999999888888766552 455666666
No 310
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=28.31 E-value=7.2e+02 Score=29.53 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=51.4
Q ss_pred hhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchh
Q 007670 34 ATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNS-ALQATCISTVSSLSPR 112 (594)
Q Consensus 34 ~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~ 112 (594)
-...|+.+.|+++.+..++..++|..|-. +..|-+|..-- -..-|++.+|+++-.|+|.+- .+|--.|.-++.+..-
T Consensus 190 ye~~P~~i~PhlP~l~~lL~q~~p~~~~l-l~~l~~LI~Qk-~~evL~~ciP~L~g~l~ds~~~~i~~~Ilk~ia~~~pv 267 (851)
T KOG3723|consen 190 YEKQPQPINPHLPELLALLSQLEPEQYHL-LRLLHVLIKQK-QLEVLQKCIPFLIGHLKDSTHNDIILNILKEIAVYEPV 267 (851)
T ss_pred HhcCCCccCcccHHHHHHhcCCCHHHHHH-HHHHHHHHHhc-cHHHHHHHHHHHHHHhccccchhHHHHHHHHHHhcCcc
Confidence 33467778888888888888888766543 44443332211 123488999999999999985 5676666666665544
Q ss_pred h
Q 007670 113 V 113 (594)
Q Consensus 113 l 113 (594)
+
T Consensus 268 ~ 268 (851)
T KOG3723|consen 268 A 268 (851)
T ss_pred c
Confidence 4
No 311
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.21 E-value=1e+03 Score=27.92 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=53.5
Q ss_pred ChhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---cc
Q 007670 1 MAHALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NL 76 (594)
Q Consensus 1 ~~~~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~i 76 (594)
|+.+|+..+.+||.-|-.++ .++|+. +.-|++.+..++. ..|+-.+--+-.....+ ..
T Consensus 32 lp~~Lr~~i~~~LiLLrNk~--------------~i~~~~LL~lff~l~~~~dk----~lRkllythiv~~Ikn~n~~~k 93 (616)
T KOG2229|consen 32 LPPELREKIVKALILLRNKN--------------LIVAEDLLELFFPLLRCGDK----NLRKLLYTHIVTTIKNINKKHK 93 (616)
T ss_pred CCHHHHHHHHHHHHHHhccC--------------cCCHHHHHHHHHHHHhcCch----hHHHHHHHHHHHHHHHHHhhcc
Confidence 45566666666666554443 235555 5566666654332 34775544444433333 33
Q ss_pred ccchHHHHH-HHHhhhcCCChhHHHHHHHHHHhhchhhh
Q 007670 77 SPYITKIIN-SITRNFRDKNSALQATCISTVSSLSPRVG 114 (594)
Q Consensus 77 sphLpkIL~-~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~ 114 (594)
..-+.+-+. ++...|.++|+. ++.+|+..+++-.-
T Consensus 94 n~klnkslq~~~fsml~~~d~~---~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 94 NDKLNKSLQAFMFSMLDQSDST---AAKMALDTMIELYK 129 (616)
T ss_pred cchHHHHHHHHHHHHHhCCCch---hHHHHHHHHHHHHH
Confidence 344555555 667888999987 66677777766554
No 312
>PF08146 BP28CT: BP28CT (NUC211) domain; InterPro: IPR012954 This C-terminal domain is found in BAP28-like nucleolar proteins []. The bap28 mutation leads to abnormalities in the brain, starting at midsomitogenesis stages. Mutant zebrafish embryos display excessive apoptosis, especially in the central nervous system (CNS) that results in death. The mutation affects a gene that encodes a large protein with high similarity to the uncharacterised human protein BAP28 and lower similarity to yeast Utp10. Utp10 is a component of a nucleolar U3 small nucleolar RNA-containing RNP complex that is required for transcription of ribosomal DNA and for processing of 18 S rRNA. Zebrafish Bap28 is also required for rRNA transcription and processing, with a major effect on 18S rRNA maturation. Bap28 is therefore required for cell survival in the CNS through its role in rRNA synthesis and processing [].
Probab=28.15 E-value=3e+02 Score=26.37 Aligned_cols=75 Identities=11% Similarity=0.210 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCC-------CCCcch-HHHHHHHHHHHhhh--ccccchHHHHHHHHhh
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSS-------DKPGVR-KECIHVIATLSNSH--NLSPYITKIINSITRN 90 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss-------~kp~~R-KaaI~lLGvlae~h--~isphLpkIL~~Ivrr 90 (594)
-...+.+.+-.|+..|+-..|-|++-.|.+-... .....| -.-.+++..+++.. ++.||..-+|..++.-
T Consensus 37 vE~~v~~~~~~lV~KLnE~~FRPlF~~l~dWA~~~l~~~~~~~~~~R~itfy~l~~~l~e~LKslf~~Y~~~ll~~~~~~ 116 (153)
T PF08146_consen 37 VESSVISAFVSLVLKLNEATFRPLFLKLVDWATSGLPKSDSSGSRARLITFYRLLNALAEKLKSLFTPYFSYLLDNAVDL 116 (153)
T ss_pred HHHHHHHHHHHHHHHcccchhHhHHHHHHHHHcccCCcccCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445667777788889888888888888765422 222223 33345555567766 8899999999998888
Q ss_pred hcCCC
Q 007670 91 FRDKN 95 (594)
Q Consensus 91 LkD~D 95 (594)
|+.-.
T Consensus 117 L~~~~ 121 (153)
T PF08146_consen 117 LKQFN 121 (153)
T ss_pred HHHhh
Confidence 86654
No 313
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=28.11 E-value=1e+03 Score=28.99 Aligned_cols=37 Identities=30% Similarity=0.314 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC
Q 007670 3 HALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL 40 (594)
Q Consensus 3 ~~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~ 40 (594)
..|+.+|..+||||+|..-..+++ .|..|=.+.+-..
T Consensus 317 ~rl~rkv~g~LNKLSdaNi~~I~~-~i~~Ly~~~sr~~ 353 (822)
T KOG2141|consen 317 QRLRRKVNGSLNKLSDANIIKIIA-GIAELYMNNSRYD 353 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcchhh
Confidence 468899999999999987666544 4444444444333
No 314
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=27.93 E-value=2.8e+02 Score=25.97 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=52.7
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc-CcCCch---HHHHHHHHhhhcC------C
Q 007670 145 LAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGL---KGLVSCLLGFLSS------Q 214 (594)
Q Consensus 145 LaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf---~~lm~~L~e~L~s------e 214 (594)
+..+.+.... ...-+..+|+-|.+-|++.+.++|.=+|-+|--+..-|. .|...+ ..+|..+++|=.. +
T Consensus 22 ~~Eia~~t~~-s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd 100 (122)
T cd03572 22 YEEIAKLTRK-SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGD 100 (122)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCc
Confidence 4444444333 223467888889999988877776667777777775553 342111 2355666666431 2
Q ss_pred --cHHHHHHHHHHHHHH
Q 007670 215 --DWAARKAAAEALWRL 229 (594)
Q Consensus 215 --Dw~lRKaAaDaLg~I 229 (594)
--.+|.+|-|++..|
T Consensus 101 ~~~~~VR~~A~El~~~i 117 (122)
T cd03572 101 SLNEKVREEAQELIKAI 117 (122)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 267899999999876
No 315
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=27.80 E-value=1.7e+02 Score=28.27 Aligned_cols=53 Identities=30% Similarity=0.364 Sum_probs=37.9
Q ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhh----HHHhhhhhHHHHHHHHH
Q 007670 435 EDLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQ----SLETRVLGLELALDEIS 487 (594)
Q Consensus 435 ~~l~~ir~QL~qiE~qQs~lldllQ~Fmg~s~~~m~----sLe~RV~gLE~aldeis 487 (594)
+=|..||-|.+||=-|=+.++|.+|.=.+.-..-+. .+++|+-.|..+|++.-
T Consensus 20 nvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~al 76 (140)
T PF04513_consen 20 NVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDAL 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988864444444333 36667776766665543
No 316
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.97 E-value=8.5e+02 Score=29.54 Aligned_cols=151 Identities=9% Similarity=0.096 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH-----hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-----~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~ 153 (594)
+|..=+-.++.|++|||+.+.++++++|-..-.-.......+ ||.|=...| ..+.+.+.
T Consensus 45 ~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~L----------------k~i~~~~~ 108 (878)
T KOG2005|consen 45 QLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVL----------------KEIYESMA 108 (878)
T ss_pred HhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHH----------------HHHHHhcc
Q ss_pred CCc-chhHHHHHHHHHHHhcCCchh------------------hHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc--
Q 007670 154 DPD-AGKLGRMEVRLERLLKSEVFK------------------AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-- 212 (594)
Q Consensus 154 ~~i-~~yL~~L~~RL~klL~s~~fk------------------aK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-- 212 (594)
+.. .-+|..++--|.--.....-. --..+.+.|+-.-.-.+.--|-++.+|...++++.
T Consensus 109 ~~n~Kk~laDIlSvLamt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~ 188 (878)
T KOG2005|consen 109 DSNLKKWLADILSVLAMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFH 188 (878)
T ss_pred CchhHhHHHHHHHHHheeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH
Q ss_pred ---CCcHHHHHHHHHHHHHHHHHcCCccchhh-----hHHHHHHHhc
Q 007670 213 ---SQDWAARKAAAEALWRLAVVEKDAVPEFK-----GKCLKIFESK 251 (594)
Q Consensus 213 ---seDw~lRKaAaDaLg~IA~a~gd~f~py~-----~~~m~sLEs~ 251 (594)
+-+.+ |+|.|..|-.+ |.+.+|+ ..++..|++|
T Consensus 189 mkHNAE~e----AiDlL~Eve~i--d~l~~~Vd~~n~~RvclYl~sc 229 (878)
T KOG2005|consen 189 MKHNAEFE----AIDLLMEVEGI--DLLLDYVDEHNYQRVCLYLTSC 229 (878)
T ss_pred HhccchhH----HHHHHHHhhhH--hHHHHHhhhhhHHHHHHHHHHH
No 317
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=26.51 E-value=5.3e+02 Score=26.18 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=56.6
Q ss_pred HHHHHhhcCCChhH----HHHHHHHHHHHHhhcCCCC-hHHHHHhhhhc----------------------------CCC
Q 007670 8 SVNGLLNKLSDRDT----YSQAAKELDSIAATVDPTL-LPTFLSCILST----------------------------NSS 54 (594)
Q Consensus 8 rvl~~L~KLsDrDT----~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~----------------------------~ss 54 (594)
.+.+.+..+....+ ...-...+..+..+.|++. ||. |+.+.=. ..+
T Consensus 43 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~~fP~-lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 121 (268)
T PF08324_consen 43 SLESLLSALKSTSAYHSDLSAWLILLLKILLSWPPESRFPA-LDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSS 121 (268)
T ss_dssp HHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-CCC-HHH-HHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTT
T ss_pred HHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCCccchhH-HhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCC
Confidence 35556666655443 4455666667777788887 543 3333111 111
Q ss_pred CCCcchHHHHHHHHHHHhhh----ccccchH-HHHHHHHhhhcCC---ChhHHHHHHHHHHhhchhhhc
Q 007670 55 DKPGVRKECIHVIATLSNSH----NLSPYIT-KIINSITRNFRDK---NSALQATCISTVSSLSPRVGA 115 (594)
Q Consensus 55 ~kp~~RKaaI~lLGvlae~h----~isphLp-kIL~~IvrrLkD~---Ds~VR~Ac~~ALG~LAe~l~~ 115 (594)
..+..+-=++|+|..+-... .+..|.. .|+..+....... +..+|-|++-.+=.+|-++.+
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~ 190 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHK 190 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHh
Confidence 23344445555555552221 4445555 5666666555544 667777777666666666543
No 318
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=26.21 E-value=9e+02 Score=34.51 Aligned_cols=131 Identities=12% Similarity=0.191 Sum_probs=80.0
Q ss_pred HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----------ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhch
Q 007670 42 PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----------NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSP 111 (594)
Q Consensus 42 p~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----------~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe 111 (594)
..|+++|.+...+.+...++.+++++.++-+.+ ...|-.+-+++-++..=.|+.--=+..-+.++++|.+
T Consensus 983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 367888888888889999999999999984433 3445566666666666556554444444444444444
Q ss_pred hhhcc-------------------------------------------------------hhHHhHHHHHHHHccCCChh
Q 007670 112 RVGAS-------------------------------------------------------AFVTMLKLLSDALFTEQDTN 136 (594)
Q Consensus 112 ~l~~~-------------------------------------------------------~~~~~lkPL~eaL~~eq~k~ 136 (594)
.+... .+..++.|+.-.|+ +++..
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~-npN~~ 1141 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELF-NPNSD 1141 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc-CCchH
Confidence 43210 01125555555554 34556
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchh
Q 007670 137 AQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK 177 (594)
Q Consensus 137 vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fk 177 (594)
|-..+-.+|..+.|..+. -+.+|+.|+.++|-.|.|+
T Consensus 1142 VR~~~~~~L~~i~~~s~~----~v~~L~~p~K~~ll~p~f~ 1178 (3550)
T KOG0889|consen 1142 VREFSQKLLRLISELSGK----SVVKLLEPFKDVLLSPIFK 1178 (3550)
T ss_pred HHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHhccccc
Confidence 666677777777776532 3566777777777555444
No 319
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.16 E-value=3.6e+02 Score=28.96 Aligned_cols=79 Identities=15% Similarity=0.140 Sum_probs=50.5
Q ss_pred HHHHHhcCCchhhHHH--HHHHHHHHHhcCcC--c----CCchHHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHHcC
Q 007670 166 RLERLLKSEVFKAKAA--GLVVVGSVIGSGAV--D----GSGLKGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 166 RL~klL~s~~fkaK~a--lL~aIGSiA~a~~~--~----~pyf~~lm~~L~e~L~se---Dw~lRKaAaDaLg~IA~a~g 234 (594)
|+.+.|.+...+-|-. =+-||+.++.+..+ + ..+=+.++..|.++|..+ .-.+|-+|+.+|.+|+.
T Consensus 221 R~A~af~~~~~R~~~l~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~--- 297 (329)
T PF06012_consen 221 RVAKAFSSSSYRRQLLQIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISH--- 297 (329)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHh---
Confidence 7899998886653322 22266666544322 2 122233788889988754 47789999999999987
Q ss_pred CccchhhhHHHHHHH
Q 007670 235 DAVPEFKGKCLKIFE 249 (594)
Q Consensus 235 d~f~py~~~~m~sLE 249 (594)
..++..+++++|.
T Consensus 298 --~~~~~~~V~~aLg 310 (329)
T PF06012_consen 298 --KRPRCSDVLRALG 310 (329)
T ss_pred --ccccHHHHHHHhc
Confidence 3344455555554
No 320
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.73 E-value=3e+02 Score=31.54 Aligned_cols=71 Identities=11% Similarity=0.086 Sum_probs=53.4
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhHH-HHHHHHHHHhcCC--chhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLG-RMEVRLERLLKSE--VFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL~-~L~~RL~klL~s~--~fkaK~alL~aIGSiA~a 192 (594)
.++-|..-| +..++.+|.-|..-|+.+|.|+++.+. +.-. .+++.++++.+.. .+++|.-+|.+|-+=..+
T Consensus 39 AvralkKRi-~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 39 AVRALKKRL-NSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHHh-ccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 445555555 567779999999999999999998764 3222 2777788888655 888999999999886654
No 321
>PRK09169 hypothetical protein; Validated
Probab=25.65 E-value=1.9e+03 Score=30.26 Aligned_cols=197 Identities=19% Similarity=0.236 Sum_probs=116.7
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHH-------HHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-cccc
Q 007670 7 TSVNGLLNKLSDRDTYSQAAKELDS-------IAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP 78 (594)
Q Consensus 7 ~rvl~~L~KLsDrDT~r~A~~eLD~-------LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isp 78 (594)
-+++-.|.|+.|.+.++.|+..|=. +...+.+..+.-.|..|..- -..+.-|+++..+.+.+++.. .+..
T Consensus 544 AN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKW--P~~~acr~Aa~aLA~rla~~~~~~~a 621 (2316)
T PRK09169 544 ANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKW--PDEDACRAAAEALAGRLARDAGLLDA 621 (2316)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhC--CCchhHHHHHHHHHHHHHhccccccc
Confidence 4677889999998888877776643 34556776688888888643 123456788887877777665 4445
Q ss_pred chHHHHHHHHhhhcC-CChhHHHHHHHHHHhhchhhhcch-----hHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670 79 YITKIINSITRNFRD-KNSALQATCISTVSSLSPRVGASA-----FVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (594)
Q Consensus 79 hLpkIL~~IvrrLkD-~Ds~VR~Ac~~ALG~LAe~l~~~~-----~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~ 151 (594)
+-+.=|..+...|.= |+. +.|..+...|++.+.+.+ +.. -+-.++.+|..-++......|+.+|+.-+-.
T Consensus 622 fn~Q~lAN~LnALSKWP~~---~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~ 698 (2316)
T PRK09169 622 FNAQDLANLLNGLSKWPDE---DDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAR 698 (2316)
T ss_pred cCHHHHHHHHHHHhcCCCc---hhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhc
Confidence 544444444444322 444 567777777888776543 222 5666777875445555666777777765533
Q ss_pred c----CCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cC-CchHHHHHHHHhh
Q 007670 152 A----QDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DG-SGLKGLVSCLLGF 210 (594)
Q Consensus 152 l----~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~-pyf~~lm~~L~e~ 210 (594)
. .+...+.+..++.=|.|....+. ++.+...+.+.++...+. |. +.+.+++-.|..+
T Consensus 699 ~~~~~~~f~aq~lAn~LnAlsKwp~~~a--cr~A~~~LA~rL~~~~~l~~a~~aQ~lAnsLNaLsKw 763 (2316)
T PRK09169 699 EAGLRQAFDAQGVANALNALSKWPEEEA--CRAAAEALAGRLAADADLRQAMNPQGLANSLNALSKW 763 (2316)
T ss_pred chhhhhhcCHHHHHHHHHHHHhccCccH--HHHHHHHHHHHHhcChHHHhhcCHHHHHHHHHHHHhC
Confidence 2 22224566777777777776554 334444444444432211 22 4444555555444
No 322
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=25.21 E-value=1.9e+02 Score=29.22 Aligned_cols=59 Identities=34% Similarity=0.365 Sum_probs=32.5
Q ss_pred HHHHHHhhHHHHHH-------HHHHhccchhhhHHHhhhhhHHHHHHHHHHHHhhhcCcccCCCCCCCc-cccCC
Q 007670 445 VQIEQQQSSLLDLL-------QRFIGRSESGMQSLETRVLGLELALDEISYDLAVSTGRMTKTNSHGAT-CCILP 511 (594)
Q Consensus 445 ~qiE~qQs~lldll-------Q~Fmg~s~~~m~sLe~RV~gLE~aldeis~dla~ssgr~~~~~~~~~~-cc~lp 511 (594)
..|=.||++|++.. |-=.=+..+++..|+.||..||.-+++.. .| +.-++.+.. +|-.|
T Consensus 17 ~~i~q~~~~ll~~~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~dq~-ll-------~~wGC~~k~~iC~T~ 83 (204)
T PF00517_consen 17 NGIVQQQSNLLRAQEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKDQQ-LL-------NIWGCSGKQHICHTP 83 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------SBSS-SSSS-S--B-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhHH-HH-------HhcccCCCcceeCCC
Confidence 34444444444443 33344666788889999999999887643 22 222355555 78754
No 323
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=24.68 E-value=4.1e+02 Score=32.07 Aligned_cols=106 Identities=12% Similarity=0.181 Sum_probs=73.5
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch-------HHHHHHHHhhhcCCChhHHHHHHHHHHhhchh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI-------TKIINSITRNFRDKNSALQATCISTVSSLSPR 112 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL-------pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~ 112 (594)
+-+++.+|.+ +-++..=+++.=+|-.|+.+- ..+.|+ ++.+|+|++.|+-.|+.|-.+++-+|..|+..
T Consensus 520 Vr~Yl~Ll~~---s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 520 VRPYLLLLAL---SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHH---hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 4456777763 345566777777777775554 222332 56779999999999998888888899999998
Q ss_pred hhcchhHH--hHHHHHHHHccCCC-----hhHHHHHHHHHHHHH
Q 007670 113 VGASAFVT--MLKLLSDALFTEQD-----TNAQVGAALCLAATI 149 (594)
Q Consensus 113 l~~~~~~~--~lkPL~eaL~~eq~-----k~vQ~~Aa~ALaavv 149 (594)
.-....+. .++-|+.-|-+.+. -.+-.++|+.|..++
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 86555554 77777777753332 334457777788777
No 324
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=24.52 E-value=3.6e+02 Score=32.53 Aligned_cols=108 Identities=11% Similarity=-0.046 Sum_probs=70.3
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-----H--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-----G--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-----~--~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~ 193 (594)
+++|-+..|....+.+++.++|.||..+.-+..... .|+ + +-++-|+++|.+++-.+..++.++++=++.-.
T Consensus 519 vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~-~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 519 VVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWS-EYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcch-hHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 666655555334689999999999998877643322 222 2 25567999999998887777777777655221
Q ss_pred --cCcCCchHHHHHHHHhhhcC------CcHHHHHHHHHHHHHHHH
Q 007670 194 --AVDGSGLKGLVSCLLGFLSS------QDWAARKAAAEALWRLAV 231 (594)
Q Consensus 194 --~~~~pyf~~lm~~L~e~L~s------eDw~lRKaAaDaLg~IA~ 231 (594)
++.. ....|+-|.++|.+ .+|++=.++|-+|--|..
T Consensus 598 rnk~li--gk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~ 641 (717)
T KOG1048|consen 598 RNKELI--GKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVR 641 (717)
T ss_pred hhhhhh--hcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHH
Confidence 1111 13457777777753 368876666666666653
No 325
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.69 E-value=2.7e+02 Score=33.11 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=31.1
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
+.++|+..+++++.|++-.|+..||.++--+.+.=
T Consensus 321 ~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D 355 (704)
T KOG2153|consen 321 LRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEND 355 (704)
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC
Confidence 48999999999999999999999999988777654
No 326
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=23.62 E-value=1e+02 Score=27.61 Aligned_cols=54 Identities=17% Similarity=0.206 Sum_probs=45.0
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--c-cccchHHHHHHHHhhhcCC
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N-LSPYITKIINSITRNFRDK 94 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~-isphLpkIL~~IvrrLkD~ 94 (594)
++.|+.++..+..|-.+.+|..++..|.++-+.+ . +..+-.+|++..+.-|.-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 6677777788889999999999999999998888 3 6778888888887777555
No 327
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.47 E-value=8.6e+02 Score=30.16 Aligned_cols=98 Identities=17% Similarity=0.205 Sum_probs=64.1
Q ss_pred HHHhhcCCChh-----HHHHHHHHHHHH-HhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccc
Q 007670 10 NGLLNKLSDRD-----TYSQAAKELDSI-AATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPY 79 (594)
Q Consensus 10 l~~L~KLsDrD-----T~r~A~~eLD~L-A~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isph 79 (594)
...|-||.|-= -.|+|+.-.+.- -.+|++=. .--|+.++--+..+-||..|--.++.||.+...- ...+|
T Consensus 62 Ns~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hh 141 (970)
T KOG1988|consen 62 NSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQVHH 141 (970)
T ss_pred hHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccchhH
Confidence 34555554422 366666665552 22565433 6778999988889999999999999999997665 45444
Q ss_pred hHHHHHHHHhhhcCCC-hhHHHHHHHHHHhhchhhh
Q 007670 80 ITKIINSITRNFRDKN-SALQATCISTVSSLSPRVG 114 (594)
Q Consensus 80 LpkIL~~IvrrLkD~D-s~VR~Ac~~ALG~LAe~l~ 114 (594)
+ |-.+|.-+| ..|| |++.|.+++++.--
T Consensus 142 l------Ir~sl~S~helE~e-aa~~Aaa~Faa~sk 170 (970)
T KOG1988|consen 142 L------IRISLDSHHELEVE-AAEFAAACFAAQSK 170 (970)
T ss_pred H------HHHHhcCccchhhH-HHHHHHhhhhhhhh
Confidence 3 334453344 4555 66677777776653
No 328
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=23.23 E-value=1.4e+02 Score=28.37 Aligned_cols=28 Identities=32% Similarity=0.207 Sum_probs=23.2
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 203 LVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 203 lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
.+..|..+|.+++..+|+.|+|.|+.|.
T Consensus 159 ~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 159 SVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4688888899999999999999999885
No 329
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=22.81 E-value=6.7e+02 Score=23.86 Aligned_cols=85 Identities=8% Similarity=0.123 Sum_probs=57.6
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
...+-.|.+||+.+++.|.--++.-|-.+...+... ..+ .|+.-|...+....++.|+......+..--+.....
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 456678899999999988888888888888887532 111 177776666633357788888888888877776533
Q ss_pred -cchhHHHHHH
Q 007670 156 -DAGKLGRMEV 165 (594)
Q Consensus 156 -i~~yL~~L~~ 165 (594)
..+++..+..
T Consensus 116 ~~l~~i~~~y~ 126 (144)
T cd03568 116 PSLSLMSDLYK 126 (144)
T ss_pred cccHHHHHHHH
Confidence 2444444333
No 330
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=22.77 E-value=7.1e+02 Score=28.85 Aligned_cols=100 Identities=16% Similarity=0.203 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc---CCCcchhHHHHHHHHHHHhcCCc
Q 007670 99 QATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA---QDPDAGKLGRMEVRLERLLKSEV 175 (594)
Q Consensus 99 R~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l---~~~i~~yL~~L~~RL~klL~s~~ 175 (594)
|-+|+..+| +|+. .+..|-..| ++-++.+.|+.||.++.-+. +=.....+..|..+|+.+|+.
T Consensus 479 r~qC~rgfg---ewid--si~~FS~~l-------~~l~idi~AfacL~aLa~iTErhGL~epkrVeelqnkIi~~LKD-- 544 (605)
T KOG4217|consen 479 RLQCLRGFG---EWID--SIREFSRSL-------HSLNIDISAFACLSALALITERHGLKEPKRVEELQNKIINCLKD-- 544 (605)
T ss_pred HHHHHHHHH---HHHH--HHHHHHHHh-------hhchhhHHHHHHHHHHHhhhhhhcCCCcchHHHHHHHHHHHHHH--
Confidence 778888777 7772 211122211 23445667777777765443 222235677788888888842
Q ss_pred hhhHHHHHHHHHHHHhcCcCcC-CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 176 FKAKAAGLVVVGSVIGSGAVDG-SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 176 fkaK~alL~aIGSiA~a~~~~~-pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
.+. ..+++... -|+..++..| -++|+.+.+-|..|=.
T Consensus 545 -----Hvt------~~~~~~~k~~~lSrllgkl--------peLr~l~tqgLqrify 582 (605)
T KOG4217|consen 545 -----HVT------GSAGKLAKPVYLSRLLGKL--------PELRTLCTQGLQRIFY 582 (605)
T ss_pred -----Hhh------hcccccccchHHHHHhhhh--------HHHHHHHHHhhhhhhc
Confidence 211 13344443 6787777777 5689999998888754
No 331
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.65 E-value=6.2e+02 Score=23.46 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=55.3
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH---HhHHHHHHHHccCCC-hhHHHHHHHHHHHHHhhcC-C
Q 007670 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV---TMLKLLSDALFTEQD-TNAQVGAALCLAATIDAAQ-D 154 (594)
Q Consensus 82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~---~~lkPL~eaL~~eq~-k~vQ~~Aa~ALaavvE~l~-~ 154 (594)
..+..|.+||+.+++.|.--++.-|..+...+... .++ .|+..|...+..... +.|+..+...+..--+... +
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~ 116 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKND 116 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 44556899999999999888888888888887432 111 278777766543333 3377777777777766654 3
Q ss_pred CcchhHHHHHHH
Q 007670 155 PDAGKLGRMEVR 166 (594)
Q Consensus 155 ~i~~yL~~L~~R 166 (594)
+..+++..+...
T Consensus 117 ~~~~~i~~~y~~ 128 (133)
T smart00288 117 PDLSQIVDVYDL 128 (133)
T ss_pred CCchHHHHHHHH
Confidence 335555554443
No 332
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=22.48 E-value=57 Score=30.21 Aligned_cols=15 Identities=53% Similarity=0.807 Sum_probs=13.0
Q ss_pred HhhhhhHHHHHHHHH
Q 007670 473 ETRVLGLELALDEIS 487 (594)
Q Consensus 473 e~RV~gLE~aldeis 487 (594)
+.||.|||.||+++-
T Consensus 42 ~~rv~GLe~AL~~v~ 56 (115)
T PF06476_consen 42 QHRVAGLEKALEEVK 56 (115)
T ss_pred HHHHHHHHHHHHHHH
Confidence 469999999999983
No 333
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.48 E-value=4.7e+02 Score=36.94 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=73.7
Q ss_pred CCcchHHHHHHHHHHHhhh-----ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh---cchhHHhHHHHHH
Q 007670 56 KPGVRKECIHVIATLSNSH-----NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG---ASAFVTMLKLLSD 127 (594)
Q Consensus 56 kp~~RKaaI~lLGvlae~h-----~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~---~~~~~~~lkPL~e 127 (594)
--..|-+|+.+|+.++-.. -.+++.++|+..+.+.|--..+-+-.++..++-..-..=. ++-....++||+.
T Consensus 1246 l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~ 1325 (3550)
T KOG0889|consen 1246 LVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLM 1325 (3550)
T ss_pred cccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHH
Confidence 3467999999999986666 5678899999999999999888888888877765543311 1223348999999
Q ss_pred HHccCCChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHHHHHHh
Q 007670 128 ALFTEQDTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVRLERLL 171 (594)
Q Consensus 128 aL~~eq~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~RL~klL 171 (594)
+|.+.++ .-...-..|..+.+....- -.++..+|++.+-+.+
T Consensus 1326 ~l~d~~~--lsv~~l~~ls~l~~ll~~~f~~e~~rkll~hl~~~~ 1368 (3550)
T KOG0889|consen 1326 NLSDHNN--LSVPGLEGLSRLLRLLINYFKVEIGRKLLQHLKKWL 1368 (3550)
T ss_pred hhhHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 9954333 2233444455555543211 1334444555554444
No 334
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=22.46 E-value=1.4e+03 Score=27.50 Aligned_cols=113 Identities=14% Similarity=0.121 Sum_probs=69.8
Q ss_pred CCCCCCcchHHHHHHHHHH-HhhhccccchHHHHHHHHhhhc---CCChhHHHHHHHHHHhhch-hhhcchh-HHhHHHH
Q 007670 52 NSSDKPGVRKECIHVIATL-SNSHNLSPYITKIINSITRNFR---DKNSALQATCISTVSSLSP-RVGASAF-VTMLKLL 125 (594)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvl-ae~h~isphLpkIL~~IvrrLk---D~Ds~VR~Ac~~ALG~LAe-~l~~~~~-~~~lkPL 125 (594)
.+..-..+||.+-.++.+. ++++ ....-+.+..|.--=+ -||-.|+ =|.++.+ .+.+.|. .-++.|.
T Consensus 20 ~Q~s~aGhrk~~a~l~~~~t~~~f--~~~flr~vn~IL~~Kk~~si~dRil~-----fl~~f~~Y~~~~dpeg~~~V~~~ 92 (885)
T COG5218 20 IQQSSAGHRKSLAELMEMLTAHEF--SEEFLRVVNTILACKKNPSIPDRILS-----FLKRFFEYDMPDDPEGEELVAGT 92 (885)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhh--HHHHHHHHHHhhccccCCCcHHHHHH-----HHHHHHHhcCCCChhhhHHHHHH
Confidence 3334568999999999887 3333 2233344444433222 2333333 2333444 3445555 3488888
Q ss_pred HHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670 126 SDALF---TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (594)
Q Consensus 126 ~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL 171 (594)
+-.++ ..++++|--..+.-|+.++++..+........|.++|.+-+
T Consensus 93 ~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~ 141 (885)
T COG5218 93 FYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERL 141 (885)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 88886 45799999999999999999987655445555666655544
No 335
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=21.72 E-value=55 Score=28.24 Aligned_cols=19 Identities=37% Similarity=0.413 Sum_probs=16.4
Q ss_pred hhhhHHHhhhhhHHHHHHH
Q 007670 467 SGMQSLETRVLGLELALDE 485 (594)
Q Consensus 467 ~~m~sLe~RV~gLE~alde 485 (594)
+...-||.||.-||.+||+
T Consensus 49 ~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 49 AKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4567899999999999985
No 336
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=21.44 E-value=1.3e+03 Score=27.64 Aligned_cols=147 Identities=13% Similarity=0.126 Sum_probs=79.3
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHH
Q 007670 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRM 163 (594)
Q Consensus 84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L 163 (594)
|.-++..|.-+|..|.+-.. +.+-+.+...-...++.-|+++-+..+... +++-++ ++. .|+-..+
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~-------~~~il~-~~~---~P~~K~~ 71 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIK---ALLQELLNSDREPWLVNGLVDYYLSTNSQR-------ALEILV-GVQ---EPHDKHL 71 (668)
T ss_pred HHHHHHHhcCCchhhHHHHH---HHHHHHhhccchHHHHHHHHHHHhhcCcHH-------HHHHHH-hcC---CccHHHH
Confidence 34445556666665544333 233333321112246777777775333322 122222 122 2566678
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc------CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCcc
Q 007670 164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD------GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (594)
Q Consensus 164 ~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~------~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f 237 (594)
|.+|-..|..+.++ -.+|.++|.+++.-.-. .|-|..++.|| ..+.+-.+=-.|+-+|..|-=.+...+
T Consensus 72 ~~~l~~~~~~~~~R--l~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L---~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 72 FDKLNDYFVKPSYR--LQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCL---QFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHcCchhH--HHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHH---hhcccHHHHHHHHHHHHHHhccccchh
Confidence 88888899877655 45788889888654332 25555555555 224455543445555554444455677
Q ss_pred chhhhHHHHHHH
Q 007670 238 PEFKGKCLKIFE 249 (594)
Q Consensus 238 ~py~~~~m~sLE 249 (594)
.+|..+++.++-
T Consensus 147 ~~~L~~Lf~If~ 158 (668)
T PF04388_consen 147 GPHLPDLFNIFG 158 (668)
T ss_pred hHHHHHHHHHHH
Confidence 777777776654
No 337
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=20.97 E-value=2.8e+02 Score=24.31 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHH
Q 007670 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKII 84 (594)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL 84 (594)
|+++..++.+.-...-..=|++.|..+ .+| ++.+-++..+....-+.+..+|+....++..|+... .-..++..-+
T Consensus 2 ~k~i~~~l~ey~~~~D~~ea~~~l~~L--~~~-~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f 78 (113)
T smart00544 2 KKKIFLIIEEYLSSGDTDEAVHCLLEL--KLP-EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGF 78 (113)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHh--CCC-cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 455555665543111122233333332 233 444444443322211235689999999999999777 5555677777
Q ss_pred HHHHhhhcCCCh
Q 007670 85 NSITRNFRDKNS 96 (594)
Q Consensus 85 ~~IvrrLkD~Ds 96 (594)
--+.+.+.|-..
T Consensus 79 ~~~~~~l~dl~~ 90 (113)
T smart00544 79 WRLLEDIEDLEL 90 (113)
T ss_pred HHHHhhChhhhc
Confidence 777777766443
No 338
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=20.82 E-value=1.6e+02 Score=25.24 Aligned_cols=53 Identities=21% Similarity=0.095 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhcCcCcCCchH--HHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHH
Q 007670 178 AKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLLGFLS-SQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 178 aK~alL~aIGSiA~a~~~~~pyf~--~lm~~L~e~L~-seDw~lRKaAaDaLg~IA~a 232 (594)
.|++ |=|||-++..... .++++ .+++.+.+... ++-|.+|..|.=+|+-||..
T Consensus 4 lKaa-LWaighIgss~~G-~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 4 LKAA-LWAIGHIGSSPLG-IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST 59 (73)
T ss_pred HHHH-HHHHHhHhcChHH-HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC
Confidence 4544 3477765533211 14444 47888888765 67899999999999999975
No 339
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.72 E-value=7.2e+02 Score=23.49 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670 80 ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (594)
Q Consensus 80 LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~ 154 (594)
-..-+-.|.+||+.+++.|.--|+.-|-.+...+... .++ .|+.-|...+....++.|+..+...+..--+....
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 118 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRN 118 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3455678899999999998888888888888887431 111 16666666553345777888888877777776654
Q ss_pred C-cchhHHHHH
Q 007670 155 P-DAGKLGRME 164 (594)
Q Consensus 155 ~-i~~yL~~L~ 164 (594)
. ..+++..+.
T Consensus 119 ~~~l~~i~~~y 129 (142)
T cd03569 119 KPQLKYVVDTY 129 (142)
T ss_pred CcccHHHHHHH
Confidence 3 244444433
No 340
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.68 E-value=60 Score=28.04 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=16.2
Q ss_pred hhhhHHHhhhhhHHHHHHH
Q 007670 467 SGMQSLETRVLGLELALDE 485 (594)
Q Consensus 467 ~~m~sLe~RV~gLE~alde 485 (594)
+.+.-||.||.-||.+||.
T Consensus 49 ~~a~rm~eRI~tLE~ILda 67 (75)
T PF06667_consen 49 EQAERMEERIETLERILDA 67 (75)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4567899999999999984
No 341
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=20.44 E-value=2e+02 Score=27.51 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=39.0
Q ss_pred HHHHHhhcCC--ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCC
Q 007670 8 SVNGLLNKLS--DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKP 57 (594)
Q Consensus 8 rvl~~L~KLs--DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp 57 (594)
+++.+++++- +.|...++-..|+.+...|+.+++..+|.++.+-..+.+.
T Consensus 28 ~ll~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~ 79 (141)
T PF08625_consen 28 RLLKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRT 79 (141)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhccccc
Confidence 5566666665 3344445899999999999999999999999988766663
No 342
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=20.34 E-value=5.7e+02 Score=25.94 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=50.9
Q ss_pred HHHhhhcCCChhHHHHHHHHHHhhchhhhcc-hhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS-AFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
.+++.|-..|..+|+.+..+|..+-..-... ... -+-|=||-+|-....+-+|..-|.-|+.++......
T Consensus 4 ~~~k~LAs~d~~~R~~al~~l~~~l~~~~~~~~~~~~~kLWKGLfy~mWmsDkpl~Q~~la~~la~l~~~~~~~ 77 (217)
T PF05997_consen 4 KFAKKLASNDKKTRDRALKSLRKWLSKRSQLLTELDMLKLWKGLFYCMWMSDKPLVQEELAEELASLIHSFPSE 77 (217)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhcCh
Confidence 3678899999999999998665443332211 111 277888888876667889998899999999887665
Done!