Query 007670
Match_columns 594
No_of_seqs 139 out of 201
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 07:34:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk1_A Protein STU2; STU2P, XM 99.8 2.8E-20 9.7E-25 185.4 16.9 196 48-244 21-234 (249)
2 2qk2_A LP04448P; mini spindles 99.8 7.2E-20 2.5E-24 178.2 17.7 208 37-255 8-226 (242)
3 4fdd_A Transportin-1; heat rep 99.8 2.6E-19 8.9E-24 202.9 18.2 223 21-245 337-571 (852)
4 2bpt_A Importin beta-1 subunit 99.8 1.4E-17 4.8E-22 185.5 23.1 244 21-266 347-628 (861)
5 1qgr_A Protein (importin beta 99.7 4.2E-16 1.4E-20 174.0 22.3 226 21-248 344-654 (876)
6 1u6g_C TIP120 protein, CAND1; 99.7 1.1E-15 3.6E-20 179.9 18.4 243 7-252 6-265 (1230)
7 2bpt_A Importin beta-1 subunit 99.7 4.4E-15 1.5E-19 165.4 21.8 252 14-266 418-712 (861)
8 1b3u_A Protein (protein phosph 99.6 3.9E-15 1.3E-19 158.2 16.6 225 7-235 241-474 (588)
9 1wa5_C Importin alpha RE-expor 99.6 6.4E-15 2.2E-19 170.2 18.1 246 21-267 377-672 (960)
10 1qgr_A Protein (importin beta 99.6 3.2E-14 1.1E-18 158.9 22.8 251 14-265 415-722 (876)
11 1ibr_B P95, importin beta-1 su 99.6 1.6E-13 5.6E-18 141.3 23.6 227 20-249 189-457 (462)
12 1u6g_C TIP120 protein, CAND1; 99.6 3.3E-14 1.1E-18 167.2 17.9 229 21-249 102-380 (1230)
13 1b3u_A Protein (protein phosph 99.5 4.9E-14 1.7E-18 149.8 16.3 224 9-236 88-315 (588)
14 4fdd_A Transportin-1; heat rep 99.5 2.5E-13 8.7E-18 153.9 22.8 231 18-249 228-489 (852)
15 1ibr_B P95, importin beta-1 su 99.5 2.4E-13 8.1E-18 140.1 19.6 259 4-265 90-395 (462)
16 2x1g_F Cadmus; transport prote 99.5 5.7E-14 2E-18 161.5 15.0 242 21-267 437-724 (971)
17 2x19_B Importin-13; nuclear tr 99.5 1.3E-13 4.5E-18 157.7 17.7 209 22-234 424-652 (963)
18 2qk2_A LP04448P; mini spindles 99.4 2.1E-12 7.2E-17 125.5 16.4 186 13-202 21-218 (242)
19 4hxt_A De novo protein OR329; 99.3 6.5E-11 2.2E-15 112.2 17.1 225 9-240 7-250 (252)
20 3ltj_A Alpharep-4; protein eng 99.3 6.3E-11 2.1E-15 110.8 16.2 171 18-230 27-197 (201)
21 3m1i_C Exportin-1; heat repeat 99.3 1.2E-11 4.3E-16 144.3 13.6 222 22-245 430-690 (1049)
22 4hat_C Exportin-1; heat repeat 99.3 1.3E-11 4.4E-16 145.4 13.4 231 21-253 429-699 (1023)
23 4b8j_A Importin subunit alpha- 99.2 1E-10 3.5E-15 125.1 16.0 216 17-233 215-445 (528)
24 3ltm_A Alpha-REP4; protein eng 99.2 2.4E-10 8.3E-15 107.6 16.4 170 21-232 35-204 (211)
25 2jdq_A Importin alpha-1 subuni 99.2 2.2E-10 7.6E-15 118.1 17.2 215 18-233 163-392 (450)
26 2jdq_A Importin alpha-1 subuni 99.2 2.1E-10 7.2E-15 118.2 16.3 212 17-232 119-348 (450)
27 1wa5_B Importin alpha subunit; 99.2 3E-10 1E-14 121.9 17.6 216 17-233 227-459 (530)
28 4db6_A Armadillo repeat protei 99.2 1.7E-10 5.7E-15 107.9 12.6 186 41-231 14-209 (210)
29 2qk1_A Protein STU2; STU2P, XM 99.2 2.3E-10 7.8E-15 113.9 14.2 182 20-202 31-233 (249)
30 4db8_A Armadillo-repeat protei 99.2 7.9E-11 2.7E-15 113.0 10.3 209 17-231 24-251 (252)
31 3ltj_A Alpharep-4; protein eng 99.2 5.7E-10 1.9E-14 104.3 15.9 155 41-230 12-166 (201)
32 3ltm_A Alpha-REP4; protein eng 99.1 5E-10 1.7E-14 105.4 14.4 155 37-230 17-171 (211)
33 1wa5_B Importin alpha subunit; 99.1 3E-10 1E-14 121.9 14.1 212 17-232 99-329 (530)
34 4b8j_A Importin subunit alpha- 99.1 1.6E-09 5.5E-14 115.8 18.5 212 17-231 86-315 (528)
35 1oyz_A Hypothetical protein YI 99.1 3.1E-09 1.1E-13 104.3 17.3 186 16-230 32-220 (280)
36 4hxt_A De novo protein OR329; 99.0 2E-09 6.7E-14 102.0 13.8 186 41-231 4-199 (252)
37 1oyz_A Hypothetical protein YI 99.0 4.7E-09 1.6E-13 103.0 16.9 166 38-230 22-187 (280)
38 2vgl_B AP-2 complex subunit be 99.0 4.8E-09 1.6E-13 115.5 18.7 237 15-264 94-346 (591)
39 3ibv_A Exportin-T; karyopherin 99.0 8.8E-10 3E-14 129.2 13.4 171 22-194 414-631 (980)
40 1wa5_C Importin alpha RE-expor 99.0 7.6E-09 2.6E-13 119.7 18.3 225 21-247 421-685 (960)
41 4db8_A Armadillo-repeat protei 98.9 8.2E-09 2.8E-13 98.9 14.2 186 41-231 14-209 (252)
42 1xqr_A HSPBP1 protein; armadil 98.9 6E-08 2E-12 99.3 19.9 184 4-193 28-240 (296)
43 2vgl_B AP-2 complex subunit be 98.9 1.4E-07 4.9E-12 103.8 23.9 219 17-248 131-399 (591)
44 2x1g_F Cadmus; transport prote 98.8 9.1E-08 3.1E-12 110.1 18.6 243 21-267 480-762 (971)
45 4db6_A Armadillo repeat protei 98.8 4.5E-08 1.5E-12 91.4 12.1 170 15-190 22-208 (210)
46 1w63_A Adapter-related protein 98.8 2.9E-08 9.9E-13 110.2 12.5 221 21-248 123-359 (618)
47 3ul1_B Importin subunit alpha- 98.7 1.2E-07 4.1E-12 102.5 16.2 212 17-231 69-303 (510)
48 3tpo_A Importin subunit alpha- 98.7 8.1E-08 2.8E-12 104.0 14.9 214 17-232 174-407 (529)
49 2x19_B Importin-13; nuclear tr 98.7 5.6E-07 1.9E-11 103.0 22.1 222 21-246 465-729 (963)
50 4ffb_C Protein STU2; tubulin f 98.7 1.9E-07 6.4E-12 93.0 15.1 184 48-236 14-217 (278)
51 3tpo_A Importin subunit alpha- 98.7 1.3E-07 4.5E-12 102.3 15.0 211 22-233 226-451 (529)
52 3ul1_B Importin subunit alpha- 98.6 1.2E-07 4.2E-12 102.3 12.4 215 17-232 155-388 (510)
53 3gjx_A Exportin-1; transport, 98.6 1.5E-07 5E-12 111.7 13.8 221 27-251 461-723 (1073)
54 1xqr_A HSPBP1 protein; armadil 98.6 2.3E-07 7.7E-12 95.0 13.5 174 59-232 56-239 (296)
55 2z6g_A B-catenin; FULL-length, 98.5 1.8E-06 6.2E-11 98.5 18.2 216 10-232 198-429 (780)
56 1jdh_A Beta-catenin; beta-cate 98.5 4.7E-06 1.6E-10 87.8 19.7 208 18-232 73-296 (529)
57 2z6h_A Catenin beta-1, beta-ca 98.5 3.9E-06 1.3E-10 92.7 19.8 216 10-232 62-293 (644)
58 1w63_A Adapter-related protein 98.5 1.9E-06 6.5E-11 95.7 16.8 222 18-250 155-433 (618)
59 1jdh_A Beta-catenin; beta-cate 98.5 9.7E-07 3.3E-11 93.0 13.7 184 41-228 229-423 (529)
60 3now_A UNC-45 protein, SD10334 98.5 1.4E-06 4.7E-11 100.6 15.2 212 17-232 548-783 (810)
61 3now_A UNC-45 protein, SD10334 98.5 1.5E-06 5.2E-11 100.3 15.5 220 8-232 425-695 (810)
62 1te4_A Conserved protein MTH18 98.4 1.6E-07 5.4E-12 83.2 4.2 120 41-187 10-129 (131)
63 1te4_A Conserved protein MTH18 98.4 8E-08 2.7E-12 85.2 1.6 124 78-229 8-131 (131)
64 2iw3_A Elongation factor 3A; a 98.4 1.4E-05 4.9E-10 93.9 20.4 201 57-267 28-242 (986)
65 2vgl_A Adaptor protein complex 98.3 3.1E-06 1.1E-10 94.5 13.6 215 31-248 134-377 (621)
66 2z6g_A B-catenin; FULL-length, 98.3 3.4E-06 1.2E-10 96.2 14.2 175 51-231 123-305 (780)
67 2iw3_A Elongation factor 3A; a 98.3 4.3E-06 1.5E-10 98.3 14.6 216 11-232 99-325 (986)
68 2db0_A 253AA long hypothetical 98.3 3.6E-05 1.2E-09 75.2 17.8 187 43-244 32-222 (253)
69 2vgl_A Adaptor protein complex 98.2 5.5E-06 1.9E-10 92.5 13.1 172 51-230 82-269 (621)
70 2z6h_A Catenin beta-1, beta-ca 98.2 1.2E-05 4E-10 88.9 15.1 187 40-231 15-212 (644)
71 3nmw_A APC variant protein; AR 98.2 9.7E-06 3.3E-10 84.9 13.2 219 4-231 47-292 (354)
72 2of3_A ZYG-9; multifunctional 98.2 9E-05 3.1E-09 75.4 19.6 176 56-241 59-246 (266)
73 3nmz_A APC variant protein; pr 98.2 1.6E-05 5.6E-10 86.1 14.8 191 41-231 191-408 (458)
74 4ffb_C Protein STU2; tubulin f 98.1 2.7E-05 9.2E-10 77.4 13.8 176 14-192 16-213 (278)
75 3m1i_C Exportin-1; heat repeat 98.1 4.3E-05 1.5E-09 89.4 17.7 230 15-246 354-635 (1049)
76 3tjz_B Coatomer subunit gamma; 98.1 9.9E-06 3.4E-10 85.4 11.0 224 10-246 70-331 (355)
77 3nmw_A APC variant protein; AR 98.0 4E-05 1.4E-09 80.2 13.4 208 20-233 99-336 (354)
78 3a6p_A Exportin-5; exportin-5, 97.9 4.8E-05 1.6E-09 91.0 13.7 208 22-234 440-700 (1204)
79 3nmz_A APC variant protein; pr 97.9 8.5E-05 2.9E-09 80.5 14.3 207 21-233 216-452 (458)
80 1xm9_A Plakophilin 1; armadill 97.9 0.00012 4E-09 78.2 13.7 137 9-151 7-173 (457)
81 1xm9_A Plakophilin 1; armadill 97.6 0.0012 4.2E-08 70.3 17.4 222 9-231 91-406 (457)
82 4ady_A RPN2, 26S proteasome re 97.6 0.0024 8.3E-08 74.9 19.6 189 41-254 509-699 (963)
83 3ibv_A Exportin-T; karyopherin 97.6 0.0053 1.8E-07 72.2 22.7 224 21-247 511-784 (980)
84 4ady_A RPN2, 26S proteasome re 97.4 0.0065 2.2E-07 71.3 20.7 218 4-240 507-729 (963)
85 3l6x_A Catenin delta-1; cateni 97.4 0.0029 9.8E-08 70.8 16.5 214 18-231 147-432 (584)
86 4hat_C Exportin-1; heat repeat 97.4 0.0008 2.7E-08 79.6 12.4 155 79-234 448-621 (1023)
87 3opb_A SWI5-dependent HO expre 97.2 0.0033 1.1E-07 72.3 14.9 225 6-232 378-636 (778)
88 3l6x_A Catenin delta-1; cateni 97.2 0.0043 1.5E-07 69.4 14.9 165 21-193 24-223 (584)
89 3b2a_A TON_1937, putative unch 97.2 0.015 5.1E-07 58.6 17.2 197 38-246 32-234 (265)
90 1vsy_5 Proteasome activator BL 97.1 0.0015 5.1E-08 77.2 11.5 165 17-187 772-962 (997)
91 4gmo_A Putative uncharacterize 97.1 0.00059 2E-08 76.8 7.5 149 82-231 35-214 (684)
92 3tjz_B Coatomer subunit gamma; 97.1 0.013 4.5E-07 61.7 17.2 243 6-266 24-277 (355)
93 3oc3_A Helicase MOT1, MOT1; re 97.1 0.0043 1.5E-07 69.2 13.1 168 8-186 224-399 (800)
94 3opb_A SWI5-dependent HO expre 97.0 0.0062 2.1E-07 70.1 14.2 170 21-191 517-728 (778)
95 3tt9_A Plakophilin-2; cell adh 96.8 0.0055 1.9E-07 60.8 10.8 147 84-232 10-181 (233)
96 3a6p_A Exportin-5; exportin-5, 96.8 0.04 1.4E-06 66.0 19.8 242 3-248 88-401 (1204)
97 3tt9_A Plakophilin-2; cell adh 96.7 0.038 1.3E-06 54.8 15.8 147 41-193 10-182 (233)
98 3oc3_A Helicase MOT1, MOT1; re 96.7 0.0067 2.3E-07 67.7 10.7 172 45-230 229-403 (800)
99 3o2t_A Symplekin; heat repeat, 96.6 0.36 1.2E-05 51.4 23.6 251 6-264 24-331 (386)
100 2db0_A 253AA long hypothetical 96.6 0.18 6.2E-06 49.5 19.0 213 8-234 32-249 (253)
101 2of3_A ZYG-9; multifunctional 96.2 0.044 1.5E-06 55.6 12.7 137 54-195 98-240 (266)
102 3l9t_A Putative uncharacterize 96.0 0.092 3.1E-06 52.7 14.0 149 79-241 68-217 (240)
103 3gjx_A Exportin-1; transport, 96.0 0.022 7.6E-07 67.8 11.0 192 76-267 411-643 (1073)
104 3b2a_A TON_1937, putative unch 96.0 0.074 2.5E-06 53.6 13.1 145 121-270 34-184 (265)
105 4gmo_A Putative uncharacterize 95.9 0.022 7.5E-07 64.1 10.1 187 39-231 34-258 (684)
106 1lrv_A LRV, leucine-rich repea 95.5 0.003 1E-07 63.1 0.7 43 48-105 103-145 (244)
107 3gs3_A Symplekin, LD45768P; he 95.4 1.2 4E-05 44.9 19.4 201 4-207 12-256 (257)
108 3l9t_A Putative uncharacterize 95.1 0.11 3.9E-06 52.0 10.5 131 9-148 72-205 (240)
109 3grl_A General vesicular trans 94.9 0.69 2.3E-05 52.4 17.4 119 8-130 64-218 (651)
110 1lsh_A Lipovitellin (LV-1N, LV 93.0 3.1 0.00011 49.4 19.0 195 25-241 375-586 (1056)
111 1lrv_A LRV, leucine-rich repea 93.0 0.033 1.1E-06 55.6 2.0 44 48-106 79-122 (244)
112 1vsy_4 Proteasome activator BL 92.2 3.1 0.00011 48.1 17.1 225 18-255 352-668 (799)
113 4atg_A TAF6; transcription, TF 91.5 0.91 3.1E-05 44.1 9.9 140 27-166 27-179 (196)
114 4atg_A TAF6; transcription, TF 89.3 5.9 0.0002 38.4 13.6 117 120-248 11-136 (196)
115 3u0r_A Apoptosis inhibitor 5; 86.0 18 0.00062 39.8 16.2 88 18-113 41-131 (507)
116 3grl_A General vesicular trans 85.7 8 0.00027 43.8 13.8 149 80-231 19-195 (651)
117 1vsy_5 Proteasome activator BL 83.5 2.5 8.7E-05 50.0 8.9 107 2-109 837-964 (997)
118 1w9c_A CRM1 protein, exportin 82.2 30 0.001 35.9 15.3 155 41-196 71-253 (321)
119 1lsh_A Lipovitellin (LV-1N, LV 80.9 14 0.00049 43.7 14.0 183 25-232 312-508 (1056)
120 3s4w_B Protein FACD2, fanconi 78.4 82 0.0028 38.6 19.4 210 38-258 395-615 (1323)
121 3vh7_A Envelope glycoprotein G 73.1 6.3 0.00022 31.3 5.4 49 437-485 4-55 (58)
122 3ldz_A STAM-1, signal transduc 69.7 19 0.00066 32.5 8.8 71 121-192 43-115 (140)
123 3ebb_A Phospholipase A2-activa 64.8 84 0.0029 32.0 13.4 59 56-114 161-223 (304)
124 3o2t_A Symplekin; heat repeat, 63.0 58 0.002 34.5 12.1 109 79-190 60-182 (386)
125 1upk_A MO25 protein; transfera 61.7 82 0.0028 33.0 12.7 170 52-231 87-283 (341)
126 1dvp_A HRS, hepatocyte growth 61.6 35 0.0012 32.8 9.4 69 123-192 45-116 (220)
127 3g2s_A C-terminal fragment of 60.8 51 0.0017 30.3 9.9 70 122-192 50-127 (149)
128 3gs3_A Symplekin, LD45768P; he 57.4 56 0.0019 32.6 10.3 85 142-229 33-117 (257)
129 3dad_A FH1/FH2 domain-containi 57.0 1.9E+02 0.0065 30.2 16.6 172 75-255 111-308 (339)
130 1mhq_A ADP-ribosylation factor 56.6 21 0.00071 32.8 6.4 70 122-192 40-117 (148)
131 1x5b_A Signal transducing adap 52.5 37 0.0013 31.5 7.6 71 121-192 53-126 (163)
132 3zyq_A Hepatocyte growth facto 48.6 26 0.00089 34.1 6.1 71 121-192 46-119 (226)
133 1juq_A ADP-ribosylation factor 47.8 79 0.0027 29.5 9.1 69 122-191 52-128 (171)
134 1vsy_4 Proteasome activator BL 47.6 1.3E+02 0.0045 34.7 12.6 115 78-192 335-456 (799)
135 3tj1_A RNA polymerase I-specif 44.3 2.7E+02 0.0093 31.5 14.1 130 36-170 129-262 (649)
136 1t06_A Hypothetical protein; s 40.1 20 0.0007 34.9 3.8 70 44-113 109-182 (235)
137 1qbz_A Protein (SIV GP41 ectod 37.5 52 0.0018 29.7 5.7 41 445-485 8-51 (123)
138 1ho8_A Vacuolar ATP synthase s 35.8 46 0.0016 36.4 6.0 57 94-150 417-476 (480)
139 2b6c_A Hypothetical protein EF 35.0 47 0.0016 31.8 5.4 79 78-160 120-198 (220)
140 3dad_A FH1/FH2 domain-containi 33.5 4.3E+02 0.015 27.5 16.4 145 5-155 116-291 (339)
141 1elk_A Target of MYB1; superhe 31.5 83 0.0028 28.8 6.3 72 121-192 54-131 (157)
142 2zfc_A HIV-1 GP41; peptide, vi 31.0 61 0.0021 24.5 4.3 16 468-483 33-48 (49)
143 3rru_A TOM1L1 protein; structu 25.5 1.3E+02 0.0043 27.7 6.3 72 121-192 54-131 (152)
144 1pyi_A Protein (pyrimidine pat 25.2 27 0.00093 28.8 1.6 29 469-497 50-78 (96)
145 3jui_A Translation initiation 24.4 2.8E+02 0.0095 25.9 8.7 73 94-169 49-133 (182)
146 3p30_A HIV-1 GP41; HIV, GP41, 23.9 75 0.0025 27.4 4.1 38 444-481 12-52 (96)
147 3p8c_E Probable protein brick1 23.8 1.4E+02 0.0048 24.8 5.5 40 447-486 25-64 (75)
148 1env_A HIV-1 envelope protein 23.4 1.1E+02 0.0039 27.5 5.4 41 444-484 36-79 (123)
149 1zme_C Proline utilization tra 23.1 53 0.0018 25.3 2.9 22 469-490 46-67 (70)
150 3fga_B Serine/threonine-protei 22.9 7E+02 0.024 26.5 19.7 138 121-264 248-401 (403)
151 3gae_A Protein DOA1; UFD3, CDC 22.0 3E+02 0.01 27.0 8.7 61 54-114 101-172 (253)
152 3jxy_A Alkylpurine DNA glycosy 21.4 57 0.002 31.5 3.3 133 17-161 73-206 (232)
153 2v66_B Nuclear distribution pr 21.1 2.2E+02 0.0074 25.2 6.6 54 436-489 18-71 (111)
154 2oqq_A Transcription factor HY 20.3 63 0.0022 24.0 2.5 21 469-489 5-25 (42)
No 1
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=2.8e-20 Score=185.43 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=170.8
Q ss_pred hhhcCCCCCCcchHHHHHHHHH-HHhhh--cc--ccchHHHHHHHHhhh-cCCChhHHHHHHHHHHhhchhhh-cc---h
Q 007670 48 ILSTNSSDKPGVRKECIHVIAT-LSNSH--NL--SPYITKIINSITRNF-RDKNSALQATCISTVSSLSPRVG-AS---A 117 (594)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGv-lae~h--~i--sphLpkIL~~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~l~-~~---~ 117 (594)
+.+..++.||..||+++..|+. ++++| +. ......++..+.+.| +|++..||.+|+.++|+||+.+. .. +
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4455578999999999999999 99888 54 456678999999999 89999999999999999999885 21 3
Q ss_pred hH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670 118 FV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 118 ~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~ 195 (594)
.. .++++|++.+ +++.+.|+.+|..||+++++.+++... +||..++++|+..|++++.++|.+++.+|++++...+.
T Consensus 101 y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 101 YVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 22 3888888888 788999999999999999999865332 45999999999999999999999999999999977654
Q ss_pred ----cCCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC-ccchhhhHH
Q 007670 196 ----DGSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD-AVPEFKGKC 244 (594)
Q Consensus 196 ----~~pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd-~f~py~~~~ 244 (594)
+.+|+ +.+||.|..+|.+++-.+|.+|.++|+.|+.++|+ .|.||...+
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 45899 99999999999999999999999999999999995 799997653
No 2
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.83 E-value=7.2e-20 Score=178.24 Aligned_cols=208 Identities=18% Similarity=0.208 Sum_probs=175.9
Q ss_pred CCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhh-cCCChhHHHHHHHHHHhhchh
Q 007670 37 DPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNF-RDKNSALQATCISTVSSLSPR 112 (594)
Q Consensus 37 ppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~ 112 (594)
||.. +..|-..+.+...+.+|..|++++..|+.++++| +..+++.++++.+.++| +|++..||.+++.++|.|+..
T Consensus 8 ~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~ 87 (242)
T 2qk2_A 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKG 87 (242)
T ss_dssp SCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4444 5555556777777899999999999999999996 66778899999999999 599999999999999999988
Q ss_pred hhcc--hhH-HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670 113 VGAS--AFV-TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSV 189 (594)
Q Consensus 113 l~~~--~~~-~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSi 189 (594)
+... +.. .++++|++.| +++++.++.+|+.||.++++..+ +..+++.|...|++.+.++|..++..|+.+
T Consensus 88 l~~~~~~~~~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 88 LAKRFSNYASACVPSLLEKF-KEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HGGGGHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 7532 222 3888888888 78999999999999999999753 678999999999999999999999999997
Q ss_pred HhcC-c--CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhH
Q 007670 190 IGSG-A--VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK 255 (594)
Q Consensus 190 A~a~-~--~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK 255 (594)
+... . .+.+|++.+||.|..+|.+.+|.+|++|.++|+.|+.++| +.|.||... |...|.+|
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~----L~~~~~~~ 226 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD----VDPLKMAK 226 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT----SCHHHHHH
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh----cCHHHHHH
Confidence 7543 2 2459999999999999999999999999999999999999 468888754 35555555
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.81 E-value=2.6e-19 Score=202.94 Aligned_cols=223 Identities=16% Similarity=0.144 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSAL 98 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~V 98 (594)
.++.|+..|+.++..++.+.++.+++.|.+...+++|.+|.+++++||.+++++ .+.||++.+++.+++.|+|+++.|
T Consensus 337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~V 416 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 416 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 378999999999999986569999999999888899999999999999999998 777999999999999999999999
Q ss_pred HHHHHHHHHhhchhhhcch----hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC
Q 007670 99 QATCISTVSSLSPRVGASA----FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE 174 (594)
Q Consensus 99 R~Ac~~ALG~LAe~l~~~~----~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~ 174 (594)
|.+|++++|.+++++.... ...+++.|+..| .++++.++..||.||..++++.++.+.+|++.|++.|.++|+..
T Consensus 417 r~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L-~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~ 495 (852)
T 4fdd_A 417 RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY 495 (852)
T ss_dssp HHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh
Confidence 9999999999999985432 223667777777 57899999999999999999998888899999999999999877
Q ss_pred chhhHHHHHHHHHHHHhcCcC-cC--CchHHHHHHHHh---hhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670 175 VFKAKAAGLVVVGSVIGSGAV-DG--SGLKGLVSCLLG---FLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (594)
Q Consensus 175 ~fkaK~alL~aIGSiA~a~~~-~~--pyf~~lm~~L~e---~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m 245 (594)
..+.+..++++|++++.+.+. +. +|++.+||.|.+ .+.+++..+| .++++|+.|+.++|+.|.||...++
T Consensus 496 ~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~ 571 (852)
T 4fdd_A 496 QHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVY 571 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 767777789999999965443 32 699999999985 4556777776 7899999999999999999987754
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.77 E-value=1.4e-17 Score=185.53 Aligned_cols=244 Identities=11% Similarity=0.117 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChh
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~ 97 (594)
.++.|.+.|+.++..++.+.++.+++.+.+...+.+|..|++++.+||.+++++ .+.+|++.|++.+++.++|+++.
T Consensus 347 ~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~ 426 (861)
T 2bpt_A 347 VSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 667899999999999986669999999999988999999999999999999876 57899999999999999999999
Q ss_pred HHHHHHHHHHhhchhhhcc----h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC----CCcchhHHHHHHHHH
Q 007670 98 LQATCISTVSSLSPRVGAS----A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ----DPDAGKLGRMEVRLE 168 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~----~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~----~~i~~yL~~L~~RL~ 168 (594)
||.++++++|++++++... . ...++++|+..| +++ +.++..||.||..+++..+ +.+.+|++.+++.|+
T Consensus 427 vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l-~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~ 504 (861)
T 2bpt_A 427 VKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLI 504 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHh-ccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 9999999999999998531 1 334788888887 444 8899999999999999976 445699999999999
Q ss_pred HHhcCC--chhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhhhcC---------------CcHHHHHHHHHHHHHHH
Q 007670 169 RLLKSE--VFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGFLSS---------------QDWAARKAAAEALWRLA 230 (594)
Q Consensus 169 klL~s~--~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~L~s---------------eDw~lRKaAaDaLg~IA 230 (594)
++|++. +..+|.+++.+|+.++...+. ..+|+..++|.+.+.|.. +...+|..++++|+.|+
T Consensus 505 ~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~ 584 (861)
T 2bpt_A 505 GAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVI 584 (861)
T ss_dssp HHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Confidence 999854 367899999999999966554 458999988888887752 24678999999999999
Q ss_pred HHcCCccchhhhHHHHH----HHhcc---hhH-HHHHHhhcCCC
Q 007670 231 VVEKDAVPEFKGKCLKI----FESKR---FDK-MIEAWKQVPDL 266 (594)
Q Consensus 231 ~a~gd~f~py~~~~m~s----LEs~R---fDK-~i~lWk~i~~v 266 (594)
...|+.+.||...+|.. ++... ..+ ++.+|..+...
T Consensus 585 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~ 628 (861)
T 2bpt_A 585 RKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS 628 (861)
T ss_dssp HHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHH
Confidence 99998899998877743 43332 222 67777766644
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.71 E-value=4.2e-16 Score=174.01 Aligned_cols=226 Identities=12% Similarity=0.127 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChh
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSA 97 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~ 97 (594)
.++.|+..|..++..++.+.++.+++.+.+...+++|.+|.+++.+||.+++++ .+.+|++.++|.+++.|+|++..
T Consensus 344 ~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~ 423 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVV 423 (876)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 778999999999999985559999999998888899999999999999999876 46789999999999999999999
Q ss_pred HHHHHHHHHHhhchhhhcc----h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC--------------CCcch
Q 007670 98 LQATCISTVSSLSPRVGAS----A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ--------------DPDAG 158 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~----~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~--------------~~i~~ 158 (594)
||.+|++++|.+++++... + ...++..|+..| .+ ++.++..|+.||..+++.++ +.+.+
T Consensus 424 vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l-~~-~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~ 501 (876)
T 1qgr_A 424 VRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGL-SA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS 501 (876)
T ss_dssp HHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT
T ss_pred HHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH
Confidence 9999999999999998532 2 223667777766 44 48899999999999999864 33578
Q ss_pred hHHHHHHHHHHHhcCC---chhhHHHH-----------------------------------------------------
Q 007670 159 KLGRMEVRLERLLKSE---VFKAKAAG----------------------------------------------------- 182 (594)
Q Consensus 159 yL~~L~~RL~klL~s~---~fkaK~al----------------------------------------------------- 182 (594)
|++.+++.|.+++... ....+..+
T Consensus 502 ~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~ 581 (876)
T 1qgr_A 502 SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQ 581 (876)
T ss_dssp THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHH
Confidence 9999999999999754 12233333
Q ss_pred ---HHHHHHHHhcCc--CcCCchHHHHHHHHhhhcCCc--HHHHHHHHHHHHHHHHHcCCccchhhhHHHHHH
Q 007670 183 ---LVVVGSVIGSGA--VDGSGLKGLVSCLLGFLSSQD--WAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF 248 (594)
Q Consensus 183 ---L~aIGSiA~a~~--~~~pyf~~lm~~L~e~L~seD--w~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sL 248 (594)
+.+++.++.+-+ .+.||++.+|+.|...|.+.. |.+|..|+.+|+.|+...|+.|.||...++..|
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l 654 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL 654 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344444443333 345889899999999888764 689999999999999999989999988877543
No 6
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.66 E-value=1.1e-15 Score=179.90 Aligned_cols=243 Identities=14% Similarity=0.154 Sum_probs=195.3
Q ss_pred HHHHHHhhcCC--ChhHHHHHHHHHHHHHhh----cCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch
Q 007670 7 TSVNGLLNKLS--DRDTYSQAAKELDSIAAT----VDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI 80 (594)
Q Consensus 7 ~rvl~~L~KLs--DrDT~r~A~~eLD~LA~~----Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL 80 (594)
+.+.+.|.++. |.|.++.|+..|...... +++.....++..|.+...++++.+|++|+++|+.+++.+.- +++
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 45677888884 667889998888775432 23333566777777777788999999999999999987622 789
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc---------hhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhh
Q 007670 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---------AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDA 151 (594)
Q Consensus 81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---------~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~ 151 (594)
+.|++.++..|.|++..||.+|+.+|+.++..+... ....+++.|+..|.+..+..++.+|+.+|..+++.
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988533 12238888888883246788999999999999998
Q ss_pred cCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHH
Q 007670 152 AQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRLA 230 (594)
Q Consensus 152 l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~se-Dw~lRKaAaDaLg~IA 230 (594)
.+..+.+|++.+++.|+.+|.+++..+|..++.+|++++...+. ..|+.+|+.|.++|..+ ++.+|..|+++|+.|+
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999865433 23566778888877654 4689999999999999
Q ss_pred HHcCCccchhhhHHHH-HHHhcc
Q 007670 231 VVEKDAVPEFKGKCLK-IFESKR 252 (594)
Q Consensus 231 ~a~gd~f~py~~~~m~-sLEs~R 252 (594)
...|+.|.||...++. .++.+.
T Consensus 243 ~~~~~~~~~~l~~l~~~ll~~l~ 265 (1230)
T 1u6g_C 243 RQAGHRIGEYLEKIIPLVVKFCN 265 (1230)
T ss_dssp HHSSGGGTTSCTTHHHHHHHHHS
T ss_pred HHhHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999988885 444443
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.65 E-value=4.4e-15 Score=165.44 Aligned_cols=252 Identities=13% Similarity=0.138 Sum_probs=200.6
Q ss_pred hcCCChh--HHHHHHHHHHHHHhhcC-----CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------ccccch
Q 007670 14 NKLSDRD--TYSQAAKELDSIAATVD-----PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------NLSPYI 80 (594)
Q Consensus 14 ~KLsDrD--T~r~A~~eLD~LA~~Lp-----pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------~isphL 80 (594)
..|.|.+ -+..|+..|-.++..++ ...++.+++.|.+...++ +.+|.++..+|+.+++.+ .+.||+
T Consensus 418 ~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~ 496 (861)
T 2bpt_A 418 NLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY 496 (861)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 3445544 45667778888887763 334888888887776654 889999999999998863 578999
Q ss_pred HHHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcch---hHHhHHHHHHHHcc--------------CCChhHHHHH
Q 007670 81 TKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASA---FVTMLKLLSDALFT--------------EQDTNAQVGA 141 (594)
Q Consensus 81 pkIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~~---~~~~lkPL~eaL~~--------------eq~k~vQ~~A 141 (594)
+.|++.+++.+++ ++..||.+++.+++.++....... ...+++++++.|.. +....++..+
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 576 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI 576 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence 9999999999985 447999999999999999885432 12377778777742 1245577899
Q ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcCCcHHHH
Q 007670 142 ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVF-KAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSSQDWAAR 219 (594)
Q Consensus 142 a~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~f-kaK~alL~aIGSiA~a~~-~~~pyf~~lm~~L~e~L~seDw~lR 219 (594)
+.||..+++.++..+.+|++.+++.+..+|++... .++..++.+|++++.+.+ .+.||++.++|.|..+|.++++.+|
T Consensus 577 ~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr 656 (861)
T 2bpt_A 577 LTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656 (861)
T ss_dssp HHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHH
Confidence 99999999999988889999999999999988866 788999999999996654 4679999999999999998899999
Q ss_pred HHHHHHHHHHHHHcCCccchhhhHHHHHHH-hc---chhH-----HHHHHhhcCCC
Q 007670 220 KAAAEALWRLAVVEKDAVPEFKGKCLKIFE-SK---RFDK-----MIEAWKQVPDL 266 (594)
Q Consensus 220 KaAaDaLg~IA~a~gd~f~py~~~~m~sLE-s~---RfDK-----~i~lWk~i~~v 266 (594)
..|+.+|+.|+...|+.|.||...++..+- .. ..|. ++.+|..|...
T Consensus 657 ~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999988885432 22 1222 66666666543
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.62 E-value=3.9e-15 Score=158.24 Aligned_cols=225 Identities=16% Similarity=0.160 Sum_probs=163.0
Q ss_pred HHHHHHhhcC-CChh--HHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccc--c
Q 007670 7 TSVNGLLNKL-SDRD--TYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLS--P 78 (594)
Q Consensus 7 ~rvl~~L~KL-sDrD--T~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~is--p 78 (594)
..++..+.++ .|.+ .++.|++.|..|+..++++. .+.+++.+.....++++.+|++++.+||.++... ... +
T Consensus 241 ~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 320 (588)
T 1b3u_A 241 ALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENV 320 (588)
T ss_dssp HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhH
Confidence 3344444444 3433 56677777777777665433 2333444444444566777887777777777665 111 5
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~ 158 (594)
+++.++|.+.+.++|++..||.+++.+++.++..+.+......+.|++..++.+.++.|+.+|+.+|..+++..+.. .
T Consensus 321 ~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~ 398 (588)
T 1b3u_A 321 IMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--Q 398 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--H
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--H
Confidence 67778888888888888888888888888887777443322345566666667888999999999999999876532 3
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCC
Q 007670 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKD 235 (594)
Q Consensus 159 yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd 235 (594)
+.+.++|.|.+++++++.+++.+++.+|+.++.. +..+ +.+.++|.+..+|.+++|.+|.+|+.+|+.++...|+
T Consensus 399 ~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 5677899999999999999999999999999854 3332 2356899999999999999999999999999998774
No 9
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=99.61 E-value=6.4e-15 Score=170.21 Aligned_cols=246 Identities=10% Similarity=0.120 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC------CCCCcchHHHHHHHHHHHhhh-----cccc-----chHHHH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS------SDKPGVRKECIHVIATLSNSH-----NLSP-----YITKII 84 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s------s~kp~~RKaaI~lLGvlae~h-----~isp-----hLpkIL 84 (594)
.+++|.+.|+.++..++...+++++..+.+.++ +++|..|.+|+++||.++++. .+.+ .+..++
T Consensus 377 ~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l 456 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF 456 (960)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH
Confidence 677999999999999984338888888766654 678999999999999998752 2222 566654
Q ss_pred -HHHHhhhcCC---ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC-------
Q 007670 85 -NSITRNFRDK---NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ------- 153 (594)
Q Consensus 85 -~~IvrrLkD~---Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~------- 153 (594)
..|...|+|+ .+.||.+||+++|++++++..+-...++.-++..| .+.++.||..||+||..++|...
T Consensus 457 ~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~ 535 (960)
T 1wa5_C 457 TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (960)
T ss_dssp HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccc
Confidence 5678888999 88999999999999999983221223555566666 56789999999999999999643
Q ss_pred ----CCcchhHHHHHHHHHHHhcCCc-----hhhHHHHHHHHHHHHhcC-cCcCCchHHHHHHHHhhhc-----CCcHHH
Q 007670 154 ----DPDAGKLGRMEVRLERLLKSEV-----FKAKAAGLVVVGSVIGSG-AVDGSGLKGLVSCLLGFLS-----SQDWAA 218 (594)
Q Consensus 154 ----~~i~~yL~~L~~RL~klL~s~~-----fkaK~alL~aIGSiA~a~-~~~~pyf~~lm~~L~e~L~-----seDw~l 218 (594)
+.+.||++.|+++|+++|+..+ ......++.+|++++.+. ..+.||++.+|+.|...+. .++..+
T Consensus 536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHH
T ss_pred cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHH
Confidence 3357999999999999998741 224467999999998654 4467999999999998875 247788
Q ss_pred HHHHHHHHHHHHHHcC-CccchhhhHHHH----HHHhcc--hhH-HHHHHhhcCCCC
Q 007670 219 RKAAAEALWRLAVVEK-DAVPEFKGKCLK----IFESKR--FDK-MIEAWKQVPDLS 267 (594)
Q Consensus 219 RKaAaDaLg~IA~a~g-d~f~py~~~~m~----sLEs~R--fDK-~i~lWk~i~~v~ 267 (594)
+..++|+|+.|+.+.+ +.+.+|...++. +|++.- |-. ++++|..+-...
T Consensus 616 ~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 616 THYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 8889999999999855 677777766664 444332 222 788877766543
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.61 E-value=3.2e-14 Score=158.86 Aligned_cols=251 Identities=13% Similarity=0.178 Sum_probs=196.2
Q ss_pred hcCCChh--HHHHHHHHHHHHHhhcCC-----CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh------------
Q 007670 14 NKLSDRD--TYSQAAKELDSIAATVDP-----TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH------------ 74 (594)
Q Consensus 14 ~KLsDrD--T~r~A~~eLD~LA~~Lpp-----e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h------------ 74 (594)
.-|.|.+ .+..|+..|..++..+++ ..++.+++.|.....+. +.+|.+++.+|+.+++.+
T Consensus 415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~ 493 (876)
T 1qgr_A 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEE 493 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 3446655 567899999999998764 34888888887777664 789999999999998764
Q ss_pred ----ccccchHHHHHHHHhhhcCCC---hhHHHHHHHHHHhhchhhhcchh---HHhHHHHHHHHcc----------CCC
Q 007670 75 ----NLSPYITKIINSITRNFRDKN---SALQATCISTVSSLSPRVGASAF---VTMLKLLSDALFT----------EQD 134 (594)
Q Consensus 75 ----~isphLpkIL~~IvrrLkD~D---s~VR~Ac~~ALG~LAe~l~~~~~---~~~lkPL~eaL~~----------eq~ 134 (594)
.+.||++.|++.+.+.+.+++ ..||.++.++++.++..+..... ..++.++++.+.. +.+
T Consensus 494 ~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d 573 (876)
T 1qgr_A 494 PATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSD 573 (876)
T ss_dssp CCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTH
T ss_pred ccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhh
Confidence 388999999999999999874 58999999999999998854321 1266666666531 222
Q ss_pred ----hhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHHhc-CcCcCCchHHHHHH
Q 007670 135 ----TNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERLLKSEV--FKAKAAGLVVVGSVIGS-GAVDGSGLKGLVSC 206 (594)
Q Consensus 135 ----k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~klL~s~~--fkaK~alL~aIGSiA~a-~~~~~pyf~~lm~~ 206 (594)
+.++..++.||..+++.++ +...+|++.++++|+++|++.. ..++..++.+|+.++.. +..+.||++.+++.
T Consensus 574 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 653 (876)
T 1qgr_A 574 RIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPF 653 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567889999999999998 7778999999999999998874 35788899999999965 44577999999999
Q ss_pred HHhhhcCC-cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHH-Hhcch---hH-----HHHHHhhcCC
Q 007670 207 LLGFLSSQ-DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF-ESKRF---DK-----MIEAWKQVPD 265 (594)
Q Consensus 207 L~e~L~se-Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sL-Es~Rf---DK-----~i~lWk~i~~ 265 (594)
|...|.+. ++.+|.+|+.+|+.|+...|+.+.||...+|..+ +...- |. ++.+|..|..
T Consensus 654 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 654 LGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH
Confidence 99999876 8999999999999999999999999998888543 33221 21 6666666653
No 11
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.58 E-value=1.6e-13 Score=141.31 Aligned_cols=227 Identities=11% Similarity=0.152 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHHhhc----CCCCh-HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchH-HHHHHHHhhh
Q 007670 20 DTYSQAAKELDSIAATV----DPTLL-PTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITRNF 91 (594)
Q Consensus 20 DT~r~A~~eLD~LA~~L----ppe~l-p~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLp-kIL~~IvrrL 91 (594)
+.+..|++.|-.++..+ +...+ ..++..|.+...++++.+|+.++.+|+.+++.+ .+.+|++ .+++.+...+
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777766644322 22222 335777777777888999999999999999988 7889999 9999999999
Q ss_pred cCCChhHHHHHHHHHHhhchhhh-----------------cc------h-hHHhHHHHHHHHcc------CCChhHHHHH
Q 007670 92 RDKNSALQATCISTVSSLSPRVG-----------------AS------A-FVTMLKLLSDALFT------EQDTNAQVGA 141 (594)
Q Consensus 92 kD~Ds~VR~Ac~~ALG~LAe~l~-----------------~~------~-~~~~lkPL~eaL~~------eq~k~vQ~~A 141 (594)
+|.+..||..+++.++.+++... .. + ...+++.|+..|.. +.+..+..+|
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence 99999999999999999988641 00 0 11255555555531 2245678899
Q ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc-C-cCCchHHHHHHHHhhhcCCcHHHH
Q 007670 142 ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-V-DGSGLKGLVSCLLGFLSSQDWAAR 219 (594)
Q Consensus 142 a~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~-~~pyf~~lm~~L~e~L~seDw~lR 219 (594)
+.||..+++..++ ..++.+++.+...|++++.+.|.+++.++|+++.... . ..++++.++|.|..+|.++++.+|
T Consensus 349 ~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr 425 (462)
T 1ibr_B 349 GVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVR 425 (462)
T ss_dssp HHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999874 5788899999999999999999999999999885332 2 358899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcc--chhhhHHHHHHH
Q 007670 220 KAAAEALWRLAVVEKDAV--PEFKGKCLKIFE 249 (594)
Q Consensus 220 KaAaDaLg~IA~a~gd~f--~py~~~~m~sLE 249 (594)
.+|+.+|+.++...++.+ .+|...+|..|-
T Consensus 426 ~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 426 DTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 999999999999887654 578888886543
No 12
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.56 E-value=3.3e-14 Score=167.22 Aligned_cols=229 Identities=14% Similarity=0.205 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHHHhhcCCC---------ChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHH
Q 007670 21 TYSQAAKELDSIAATVDPT---------LLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKIINSIT 88 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe---------~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~Iv 88 (594)
.+..|...|..++..++++ ..+.+++.|.+... ++++.+|.+++.+|+.+++.. .+.||++.+++.+.
T Consensus 102 vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~ 181 (1230)
T 1u6g_C 102 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLL 181 (1230)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 5678899999999999876 25666666666655 577899999999999999876 78899999999999
Q ss_pred hhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 007670 89 RNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLE 168 (594)
Q Consensus 89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~ 168 (594)
..|.|+++.||.+++.+++.++....+.-+..++..|+..|..+.+..+..+|+.||..+++..+....+|++.+++-++
T Consensus 182 ~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll 261 (1230)
T 1u6g_C 182 PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVV 261 (1230)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875433334788888888655445566788999999999988877899999999999
Q ss_pred HHhcCCchhhHHHHHHHHHHHHhcCc-CcCCchHHHHHHHHhhhcC----------------------------------
Q 007670 169 RLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGLKGLVSCLLGFLSS---------------------------------- 213 (594)
Q Consensus 169 klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf~~lm~~L~e~L~s---------------------------------- 213 (594)
+.+..++..++..++.+++.++..-+ ++.||++.+++.+..++..
T Consensus 262 ~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1230)
T 1u6g_C 262 KFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 341 (1230)
T ss_dssp HHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------------------------
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhccccccc
Confidence 99998888899999999999997654 4569999999999887741
Q ss_pred ---CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHH
Q 007670 214 ---QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFE 249 (594)
Q Consensus 214 ---eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLE 249 (594)
..|.+|++|+++|+.++...++.|.||...++..+-
T Consensus 342 ~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~ 380 (1230)
T 1u6g_C 342 DDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380 (1230)
T ss_dssp ---CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Confidence 128899999999999999878889999988887654
No 13
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.55 E-value=4.9e-14 Score=149.77 Aligned_cols=224 Identities=9% Similarity=0.051 Sum_probs=173.8
Q ss_pred HHHHhhcC-C--ChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHH
Q 007670 9 VNGLLNKL-S--DRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKII 84 (594)
Q Consensus 9 vl~~L~KL-s--DrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL 84 (594)
++..|..+ . |...+..|++.|..++..++++. .+.+++.+.....++.+..|..++.+|+.++...- ..+.+.++
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~-~~~~~~l~ 166 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELR 166 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-HHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 44444444 2 33478899999999999998765 34455555555556678889999999999876541 13578899
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 007670 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRME 164 (594)
Q Consensus 85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~ 164 (594)
|.+.+.++|+++.||.+++.++|.+++.+........+.|++..++.+.+..+..+|+.||..+.+..++. .+.+.++
T Consensus 167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~~~ 244 (588)
T 1b3u_A 167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVM 244 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--HHHHHTH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--HHHHHHH
Confidence 99999999999999999999999999988543333344555555557888999999999999999987642 3566788
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCc
Q 007670 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDA 236 (594)
Q Consensus 165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~ 236 (594)
+.+.++++.++..+|.+++.++|.++...+. ..+.+.+++.+...+.+++|.+|.+|+.+|+.++...+..
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~ 315 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChh
Confidence 8888999999999999999999998854221 1244668899999999999999999999999999987753
No 14
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.54 E-value=2.5e-13 Score=153.95 Aligned_cols=231 Identities=14% Similarity=0.113 Sum_probs=188.0
Q ss_pred ChhHHHHHHHHHHHHHhhcCC---CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh----ccccchHHHHHHHHhh
Q 007670 18 DRDTYSQAAKELDSIAATVDP---TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH----NLSPYITKIINSITRN 90 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lpp---e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h----~isphLpkIL~~Ivrr 90 (594)
|.+..+.|++.|..|+...|. ..+..++..+.....+.++.+|..++..+..+++.. ++.||+++++|.+++.
T Consensus 228 ~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~ 307 (852)
T 4fdd_A 228 EPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNG 307 (852)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 444788899999999987652 125556666666666778899999999999998742 6889999999999999
Q ss_pred h-----------cC-----------CChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007670 91 F-----------RD-----------KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAAT 148 (594)
Q Consensus 91 L-----------kD-----------~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaav 148 (594)
+ .| .+-.||.++..+++.|+..+.+.....+++-|.+.| .+.+..+..+|+.||..+
T Consensus 308 l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l-~~~~~~~R~aa~~alg~i 386 (852)
T 4fdd_A 308 MKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHHEWVVKESGILVLGAI 386 (852)
T ss_dssp TSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHT
T ss_pred cCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH
Confidence 8 45 345789999999999999885432333444444444 677899999999999999
Q ss_pred HhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC-cC-cCCchHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 007670 149 IDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-AV-DGSGLKGLVSCLLGFLSSQDWAARKAAAEAL 226 (594)
Q Consensus 149 vE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~-~~-~~pyf~~lm~~L~e~L~seDw~lRKaAaDaL 226 (594)
.++.++...+|++.+++-++.+|++++..++.++..++|.++... .. ..+|+..+|+.|...|.++++.+|.+|+.+|
T Consensus 387 ~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL 466 (852)
T 4fdd_A 387 AEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAF 466 (852)
T ss_dssp TTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 998876667899999999999999999999999999999888542 23 3599999999999999999999999999999
Q ss_pred HHHHHHcCCccchhhhHHHHHHH
Q 007670 227 WRLAVVEKDAVPEFKGKCLKIFE 249 (594)
Q Consensus 227 g~IA~a~gd~f~py~~~~m~sLE 249 (594)
+.++...++.+.||...++..|-
T Consensus 467 ~~l~~~~~~~l~~~l~~ll~~L~ 489 (852)
T 4fdd_A 467 ATLEEEACTELVPYLAYILDTLV 489 (852)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHH
T ss_pred HHHHHHhhHhhHhHHHHHHHHHH
Confidence 99999888889999988885443
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.54 E-value=2.4e-13 Score=140.13 Aligned_cols=259 Identities=15% Similarity=0.178 Sum_probs=192.5
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC-ChHHHHHhhhhcCCCC--CCcchHHHHHHHHHHHhhh---ccc
Q 007670 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPT-LLPTFLSCILSTNSSD--KPGVRKECIHVIATLSNSH---NLS 77 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe-~lp~fLs~L~e~~ss~--kp~~RKaaI~lLGvlae~h---~is 77 (594)
.+|+.++..|..- +... +.+...|-.||...-|+ ..|-+++.|.+...++ ++.+|..++.+|+.+++.+ .+.
T Consensus 90 ~ik~~ll~~l~~~-~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~ 167 (462)
T 1ibr_B 90 EVKNYVLQTLGTE-TYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQ 167 (462)
T ss_dssp HHHHHHHHHTTCC-CSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTG
T ss_pred HHHHHHHHHhCCC-Cchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhH
Confidence 4667777766542 3335 77888899999886443 4666666666655556 7889999999999999864 688
Q ss_pred cchHHHHHHHHhhhcCC--ChhHHHHHHHHHHhhchhhhcch----hHHh-HHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670 78 PYITKIINSITRNFRDK--NSALQATCISTVSSLSPRVGASA----FVTM-LKLLSDALFTEQDTNAQVGAALCLAATID 150 (594)
Q Consensus 78 phLpkIL~~IvrrLkD~--Ds~VR~Ac~~ALG~LAe~l~~~~----~~~~-lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE 150 (594)
+|++.+++.+.+.|+|+ +..||.+++.+++.+.+++.+.. +..+ +..|.. +..+.+..+...++.||..+++
T Consensus 168 ~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 168 DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMS 246 (462)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999 68999999999999877653211 1223 444444 4467788999999999999999
Q ss_pred hcCCCcchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC------------------cCc----CCchHHHHHHH
Q 007670 151 AAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG------------------AVD----GSGLKGLVSCL 207 (594)
Q Consensus 151 ~l~~~i~~yL~-~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~------------------~~~----~pyf~~lm~~L 207 (594)
..++...+|++ .+++-++..++.....++..++..++.++... ... .+|+..++|.|
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 88776678898 89999999998888888888998888887541 111 14567888988
Q ss_pred HhhhcC-------CcHHHHHHHHHHHHHHHHHcCCccchhhhHHH-HHHHhcchhH---HHHHHhhcCC
Q 007670 208 LGFLSS-------QDWAARKAAAEALWRLAVVEKDAVPEFKGKCL-KIFESKRFDK---MIEAWKQVPD 265 (594)
Q Consensus 208 ~e~L~s-------eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m-~sLEs~RfDK---~i~lWk~i~~ 265 (594)
...|.. ++|.+|.+|+++|+.++...|+.+.|..-+.+ ..|.+..... ++.+...|..
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~ 395 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 888853 46999999999999999998864444333333 3444332222 8888888874
No 16
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=99.52 E-value=5.7e-14 Score=161.48 Aligned_cols=242 Identities=13% Similarity=0.051 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCC-----CCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhc-
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSS-----DKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFR- 92 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss-----~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLk- 92 (594)
.++.+.+.|+.++..++.+.++.++..|.+...+ ++|..|.+++++||.+++++ ...++|+.|++ ++-.|.
T Consensus 437 ~R~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~ 515 (971)
T 2x1g_F 437 YRQDISDTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPY 515 (971)
T ss_dssp HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCc
Confidence 3456777888888877744488888888776544 78999999999999999999 66799999999 555555
Q ss_pred -CCChhHHHHHHHHHHhhchhhhcch--hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670 93 -DKNSALQATCISTVSSLSPRVGASA--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (594)
Q Consensus 93 -D~Ds~VR~Ac~~ALG~LAe~l~~~~--~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k 169 (594)
|+++.||.++++++|++++|+.+.+ ...+++-|+..| + +.|+..||+||..+++.+...+.||++.|+..|.+
T Consensus 516 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~ 591 (971)
T 2x1g_F 516 EKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA 591 (971)
T ss_dssp TTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 7899999999999999999996544 122555555555 3 78999999999999999888888999999999999
Q ss_pred HhcCC--chhhHHHHHHHHHHHHhcCc-C-cCCchHHHHHHHHhhhc----CC--cHHHHHHHHHHHHHHHHH---cC--
Q 007670 170 LLKSE--VFKAKAAGLVVVGSVIGSGA-V-DGSGLKGLVSCLLGFLS----SQ--DWAARKAAAEALWRLAVV---EK-- 234 (594)
Q Consensus 170 lL~s~--~fkaK~alL~aIGSiA~a~~-~-~~pyf~~lm~~L~e~L~----se--Dw~lRKaAaDaLg~IA~a---~g-- 234 (594)
+++.+ ....+..++++||.++.+.+ + ..+|+..+++.+...|. .. +-+.+..++++|+.|+.+ ++
T Consensus 592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~ 671 (971)
T 2x1g_F 592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD 671 (971)
T ss_dssp HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence 99985 56789999999999997643 2 35888887766666543 22 333556666666666543 33
Q ss_pred -----------CccchhhhHHHHHHH----hcchhH-----HHHHHhhcCCCC
Q 007670 235 -----------DAVPEFKGKCLKIFE----SKRFDK-----MIEAWKQVPDLS 267 (594)
Q Consensus 235 -----------d~f~py~~~~m~sLE----s~RfDK-----~i~lWk~i~~v~ 267 (594)
+.+.||...+|.++. ..--|. ++.+|+.+...+
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Confidence 256777777776444 321122 888888876655
No 17
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=99.52 E-value=1.3e-13 Score=157.67 Aligned_cols=209 Identities=13% Similarity=0.059 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcC----CCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCC
Q 007670 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTN----SSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKN 95 (594)
Q Consensus 22 ~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~----ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~D 95 (594)
.+.+.+.|+.++..++.+.++.+++.+.+.. .+.+|..|.+++.+||.+++++ ...++|+.|++.+ -.|.+++
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l-~~l~~~~ 502 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI-PRISISN 502 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG-GGSCCCS
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH-HhCCCCc
Confidence 4566778888887777655888888886665 6778999999999999999998 6678999999955 4677778
Q ss_pred hhHHHHHHHHHHhhchhhhcchhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcC
Q 007670 96 SALQATCISTVSSLSPRVGASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKS 173 (594)
Q Consensus 96 s~VR~Ac~~ALG~LAe~l~~~~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s 173 (594)
+.||.++++++|++++|+.+.+.. .++.-|+..| + ++.||..||.||.++++.+...+.||++.|+..|..++..
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~ 579 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL-G--NPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMK 579 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT-T--CGGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh-C--CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 899999999999999999654421 2555555555 3 4899999999999999998888899999999999999986
Q ss_pred C--chhhHHHHHHHHHHHHhcCc--CcCCchHHHHHHHHhhhc----C-CcH---HHHHHHHHHHHHHHHHcC
Q 007670 174 E--VFKAKAAGLVVVGSVIGSGA--VDGSGLKGLVSCLLGFLS----S-QDW---AARKAAAEALWRLAVVEK 234 (594)
Q Consensus 174 ~--~fkaK~alL~aIGSiA~a~~--~~~pyf~~lm~~L~e~L~----s-eDw---~lRKaAaDaLg~IA~a~g 234 (594)
+ ....+..++.+||.++.+.+ .+.+|+..+|+.+.+.|. . .+- ..+..+.++|+.|+.+++
T Consensus 580 ~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~ 652 (963)
T 2x19_B 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLD 652 (963)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 4 56789999999999997654 346999999988888764 1 133 344478888988888876
No 18
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=2.1e-12 Score=125.49 Aligned_cols=186 Identities=12% Similarity=0.191 Sum_probs=152.1
Q ss_pred hhcCCChh--HHHHHHHHHHHHHhhcC---CCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh--ccccchHHHH
Q 007670 13 LNKLSDRD--TYSQAAKELDSIAATVD---PTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKII 84 (594)
Q Consensus 13 L~KLsDrD--T~r~A~~eLD~LA~~Lp---pe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h--~isphLpkIL 84 (594)
+..+.|.| .++.|+..|..++..-+ ...+..++..|...+. +.++.+|.+++.+||.++... .+.+|++.|+
T Consensus 21 ~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~il 100 (242)
T 2qk2_A 21 YDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACV 100 (242)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33455554 78899999999988732 3336677777777664 678899999999999999876 7789999999
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC--cchhHHH
Q 007670 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP--DAGKLGR 162 (594)
Q Consensus 85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~--i~~yL~~ 162 (594)
|.|+.+|+|+...||++|+.||..++..+ +...+++.|+.+| .+.++.++..++..|..+++..+.. ..+|++.
T Consensus 101 p~ll~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~ 176 (242)
T 2qk2_A 101 PSLLEKFKEKKPNVVTALREAIDAIYAST---SLEAQQESIVESL-SNKNPSVKSETALFIARALTRTQPTALNKKLLKL 176 (242)
T ss_dssp HHHHHGGGCCCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH
Confidence 99999999999999999999999998876 2334788888887 6678999999999999999887532 4689999
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhc-CcC-cCCchHH
Q 007670 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV-DGSGLKG 202 (594)
Q Consensus 163 L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~~-~~pyf~~ 202 (594)
+++.|.++|+.+...+|.++..++|.++.+ |.+ +.+|++.
T Consensus 177 l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~ 218 (242)
T 2qk2_A 177 LTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLAD 218 (242)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTT
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 999999999999999999999999999955 433 3455543
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.30 E-value=6.5e-11 Score=112.23 Aligned_cols=225 Identities=18% Similarity=0.192 Sum_probs=163.0
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc
Q 007670 9 VNGLLNKLSDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY 79 (594)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lp--------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph 79 (594)
+++.|.. .|.+.+..|+..|-.++..-+ ...++.++.+|. ++++.+|..++.+|+.++... ....+
T Consensus 7 L~~~L~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 7 LVKLLTS-TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT----STDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh----CCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3444432 456678888888888877543 223666666665 456889999999999998763 11122
Q ss_pred h--HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC
Q 007670 80 I--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ 153 (594)
Q Consensus 80 L--pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~ 153 (594)
+ ...++.+++.|++++..||..|+.+|+.|+..-.+.. +. ..+++|+..| .+.++.++..|+.||..+....+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCH
Confidence 1 2478899999999999999999999999996542211 11 1788888877 67789999999999999987532
Q ss_pred CCcchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670 154 DPDAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (594)
Q Consensus 154 ~~i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~I 229 (594)
+. ...+ ...++.|..+|.+++..++..++.+|+.++........++ ..+++.|.+.|.+++..+|+.|+.+|+.|
T Consensus 161 ~~-~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 161 EA-IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239 (252)
T ss_dssp HH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 11 1222 2378899999999999999999999998875332221111 24789999999999999999999999999
Q ss_pred HHHcCCccchh
Q 007670 230 AVVEKDAVPEF 240 (594)
Q Consensus 230 A~a~gd~f~py 240 (594)
+...+..+.+|
T Consensus 240 ~~~~~~~~~~~ 250 (252)
T 4hxt_A 240 KSGGWLEHHHH 250 (252)
T ss_dssp HHTCBCCC---
T ss_pred HcCCCcccccc
Confidence 99866544444
No 20
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.29 E-value=6.3e-11 Score=110.82 Aligned_cols=171 Identities=16% Similarity=0.217 Sum_probs=124.2
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChh
Q 007670 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSA 97 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~ 97 (594)
|.+....|+..|-.+. +++.++.++.+|. ++++.+|..++.+||.+.. +..++.+++.|.|+++.
T Consensus 27 ~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~d~~~~ 91 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIG---DERAVEPLIKALK----DEDAWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGW 91 (201)
T ss_dssp CHHHHHHHHHHHHHHC---CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHH
T ss_pred CHHHHHHHHHHHHhcC---ChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHH
Confidence 3346666666665543 2344777776664 4677889998888887743 24567777888899999
Q ss_pred HHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchh
Q 007670 98 LQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK 177 (594)
Q Consensus 98 VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fk 177 (594)
||.+++++||.+...- .+..|...| .+.++.|+..|+.+|..+.+ +..++.|.++|++++..
T Consensus 92 vr~~a~~aL~~~~~~~-------~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~ 153 (201)
T 3ltj_A 92 VRQSAAVALGQIGDER-------AVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGW 153 (201)
T ss_dssp HHHHHHHHHHHHCCGG-------GHHHHHHHT-TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHhCcHH-------HHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHH
Confidence 9999999998876543 556666666 67788888888888887743 23445677788888888
Q ss_pred hHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 178 AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 178 aK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
++.+++.++|.+ + -+..++.|.++|.++++.+|.+|+.+|+.|.
T Consensus 154 vr~~A~~aL~~~---~------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 154 VRQSAADALGEI---G------GERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHH---C------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh---C------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 888888888865 1 2467788888888888889999998888764
No 21
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=99.28 E-value=1.2e-11 Score=144.31 Aligned_cols=222 Identities=10% Similarity=0.002 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC--CCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhh-----
Q 007670 22 YSQAAKELDSIAATVDPTLLPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNF----- 91 (594)
Q Consensus 22 ~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s--s~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrL----- 91 (594)
++.+.+.|+.++...+.+.++.+++.|..... +.+|..|.+++.+||.+++++ .-.++++.|++.+....
T Consensus 430 ~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~ 509 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRG 509 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhcc
Confidence 45777888888854444348888888877654 467899999999999998876 23467899999888743
Q ss_pred cCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCCcc--------hhH
Q 007670 92 RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDPDA--------GKL 160 (594)
Q Consensus 92 kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~i~--------~yL 160 (594)
+|+.+.||..+++++|++++|+...+ .++++++..|+ .+.++.||..||+||.++++.+..... ||+
T Consensus 510 ~~~~~~v~~~~~~~lgry~~~~~~~~--~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~ 587 (1049)
T 3m1i_C 510 KDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI 587 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH
Confidence 25777888889999999999996544 34555555443 567899999999999999998765443 999
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhcC------------CcHHHHHH---H
Q 007670 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLSS------------QDWAARKA---A 222 (594)
Q Consensus 161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~pyf~~lm~~L~e~L~s------------eDw~lRKa---A 222 (594)
+.|+..+..++..-.......++.+||.++.+.+. ..+|+..+|+.+.+.|.. .|-...+. .
T Consensus 588 ~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~ 667 (1049)
T 3m1i_C 588 QTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANI 667 (1049)
T ss_dssp HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHH
Confidence 99999999999876666677899999999977653 348888888776655421 12222232 3
Q ss_pred HHHHHHHHHHcCCccchhhhHHH
Q 007670 223 AEALWRLAVVEKDAVPEFKGKCL 245 (594)
Q Consensus 223 aDaLg~IA~a~gd~f~py~~~~m 245 (594)
+.++..++...|..|.|+...++
T Consensus 668 l~~~~~~~~~l~~~f~p~~~~i~ 690 (1049)
T 3m1i_C 668 IKTNVAVCTSMGADFYPQLGHIY 690 (1049)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 56778888889999999877665
No 22
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=99.28 E-value=1.3e-11 Score=145.36 Aligned_cols=231 Identities=9% Similarity=-0.013 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC--CCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhc---
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFR--- 92 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s--s~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLk--- 92 (594)
..+..=+.|..++.-+.++.++.+++.+.+... +.+|..|.+++.+||.++++. ...++|+.+++.++..+.
T Consensus 429 ~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~ 508 (1023)
T 4hat_C 429 LYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR 508 (1023)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc
Confidence 344444667666665666568888888876543 478999999999999999887 478999999999998776
Q ss_pred --CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC--------cchh
Q 007670 93 --DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP--------DAGK 159 (594)
Q Consensus 93 --D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~--------i~~y 159 (594)
|+...||+.+++++|++++|+...+ .+|+|++..|+ .+.++.+|..||.||.++++.+... ..||
T Consensus 509 ~~d~k~~v~~t~~~~lGry~~wl~~~~--~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~ 586 (1023)
T 4hat_C 509 GKDNKAVVASDIMYVVGQYPRFLKAHW--NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPF 586 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHTCHHHHHHCH--HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchh
Confidence 5778899999999999999996544 36777777776 4567899999999999999987532 2579
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc---CCchHHHHHHHHhhhcC---------CcH-----HHHH-H
Q 007670 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD---GSGLKGLVSCLLGFLSS---------QDW-----AARK-A 221 (594)
Q Consensus 160 L~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~---~pyf~~lm~~L~e~L~s---------eDw-----~lRK-a 221 (594)
++.|+..+..++..-..+....++.+||.++.+.+.. ..|+..+|+.+.+.+.. +-| .-+- .
T Consensus 587 ~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~ 666 (1023)
T 4hat_C 587 IQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIAN 666 (1023)
T ss_dssp HHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHH
Confidence 9999999999987667777888999999999776432 25777777666555431 112 2222 3
Q ss_pred HHHHHHHHHHHcCCccchhhhHHHH-HHHhcch
Q 007670 222 AAEALWRLAVVEKDAVPEFKGKCLK-IFESKRF 253 (594)
Q Consensus 222 AaDaLg~IA~a~gd~f~py~~~~m~-sLEs~Rf 253 (594)
-+++++++|...|..|.||...++. .++=+|.
T Consensus 667 il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 667 IIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA 699 (1023)
T ss_dssp HHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999987773 4443333
No 23
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.23 E-value=1e-10 Score=125.06 Aligned_cols=216 Identities=14% Similarity=0.139 Sum_probs=161.6
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHHHHHHhh
Q 007670 17 SDRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRN 90 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL~~Ivrr 90 (594)
.|.+..+.|+..|-.|+..-|... +..+++.|.....+.++.+|..++.+|+.++.+. .+...+ ..+++.+++.
T Consensus 215 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~l 294 (528)
T 4b8j_A 215 TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVEL 294 (528)
T ss_dssp CCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Confidence 455688889999999988754322 2334444545556778899999999999998765 211111 2478899999
Q ss_pred hcCCChhHHHHHHHHHHhhchhhhcchhH----HhHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCCcchhH-HHHH
Q 007670 91 FRDKNSALQATCISTVSSLSPRVGASAFV----TMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDPDAGKL-GRME 164 (594)
Q Consensus 91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~----~~lkPL~eaL~~eq-~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~ 164 (594)
|++++..||..|+.+||.|+......... .++++|+..| .+. ++.++..||.+|..+..+..+.....+ ..++
T Consensus 295 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i 373 (528)
T 4b8j_A 295 LLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLL-TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGII 373 (528)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCH
T ss_pred HcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHH-cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCH
Confidence 99999999999999999999854322111 1678888887 455 899999999999999874222111112 2477
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcCc-CcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
+.|+.+|.+.++.++..++.+|+.++..+. +...|+ ..+++.|...|.+.|+.+|..|+++|+.|....
T Consensus 374 ~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 374 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999987642 333444 357899999999999999999999999998864
No 24
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.22 E-value=2.4e-10 Score=107.61 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~ 100 (594)
....|+..|-.+. +++.++.|+.++. ++++.+|.+++.+||.+.. +..++.+++.|+|+++.||.
T Consensus 35 vR~~A~~~L~~~~---~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~ 99 (211)
T 3ltm_A 35 VRRAAAYALGKIG---DERAVEPLIKALK----DEDAWVRRAAADALGQIGD--------ERAVEPLIKALKDEDGWVRQ 99 (211)
T ss_dssp HHHHHHHHHHHHC---CGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHhC---CccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCC--------HHHHHHHHHHHcCCCHHHHH
Confidence 5555555554432 2344666666554 3567778888777777642 34556666777788888888
Q ss_pred HHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHH
Q 007670 101 TCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKA 180 (594)
Q Consensus 101 Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~ 180 (594)
+++.+||.+...- .+..|...| .+.++.|+..|+.+|..+-+ +..++.|.++|++++..++.
T Consensus 100 ~a~~aL~~~~~~~-------~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~ 161 (211)
T 3ltm_A 100 SAAVALGQIGDER-------AVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQ 161 (211)
T ss_dssp HHHHHHHHHCCGG-------GHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHhCcHH-------HHHHHHHHH-hCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHH
Confidence 8888887776532 455556555 66777777777777777632 12344566677777777777
Q ss_pred HHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 181 AGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 181 alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
+++.+++.+. -+.+++.|..+|.++++.+|.+|+++|+.+...
T Consensus 162 ~a~~aL~~~~---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 162 SAADALGEIG---------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHHHHHHHHC---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhC---------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 7777777542 145667777777777777888888887776543
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.22 E-value=2.2e-10 Score=118.07 Aligned_cols=215 Identities=11% Similarity=0.100 Sum_probs=156.4
Q ss_pred ChhHHHHHHHHHHHHHhhcCCC-C---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc--hHHHHHHHHhh
Q 007670 18 DRDTYSQAAKELDSIAATVDPT-L---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRN 90 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lppe-~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph--LpkIL~~Ivrr 90 (594)
+.+..+.|+..|-.|+..-.|. . +..+++.|.....+.++.+|..++.+|+.++... -.... -..+++.+++.
T Consensus 163 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 242 (450)
T 2jdq_A 163 RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242 (450)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHH
Confidence 4557889999999999765221 1 2333444444444677899999999999998754 11111 13477888889
Q ss_pred hcCCChhHHHHHHHHHHhhchhhhcchh--H--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHH
Q 007670 91 FRDKNSALQATCISTVSSLSPRVGASAF--V--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEV 165 (594)
Q Consensus 91 LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~--~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~ 165 (594)
|++++..||.+|+.+|+.|+........ . .++++|+..| .+.++.++..|+.||..+..+.++.....+ ..+++
T Consensus 243 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 321 (450)
T 2jdq_A 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFP 321 (450)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred HCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 9999999999999999999986532111 1 2677777777 567899999999999999874322222223 24788
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHhcCc-CcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 166 RLERLLKSEVFKAKAAGLVVVGSVIGSGA-VDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 166 RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
.|+.+|++++..+|..++.+|+.++..+. +...++ ..+++.|.+.|.+.++.+|..|+.+|+.++...
T Consensus 322 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 322 ALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 89999999999999999999999886432 222222 247899999999999999999999999999854
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.20 E-value=2.1e-10 Score=118.24 Aligned_cols=212 Identities=15% Similarity=0.152 Sum_probs=161.2
Q ss_pred CChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHH
Q 007670 17 SDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIIN 85 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lp--------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~ 85 (594)
.|.+.+..|+..|-.|+..-+ ...++.|+.++.+ ++++.+|+.++.+|+.++... .-...+..++|
T Consensus 119 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 195 (450)
T 2jdq_A 119 EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK---QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLN 195 (450)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS---CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC---CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 345578889999988887532 3448888888763 356789999999999999654 22344578899
Q ss_pred HHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-
Q 007670 86 SITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (594)
Q Consensus 86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL- 160 (594)
.+++.|+++|..||..++++|+.|+....+.. .. .++++|+..| .+.+..++..|+.||..++...++.....+
T Consensus 196 ~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 274 (450)
T 2jdq_A 196 VLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274 (450)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-CCCchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 99999999999999999999999998653211 11 2788888877 678899999999999999875332111112
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc-CCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~-~pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
..+++.|.++|++++..++..++.+|+.++...... ...+ ..+++.|...|.+++..+|+.|+-+|+.++..
T Consensus 275 ~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 148889999999999899999999999887422111 1222 25788899999899999999999999999875
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.19 E-value=3e-10 Score=121.86 Aligned_cols=216 Identities=13% Similarity=0.116 Sum_probs=159.3
Q ss_pred CChhHHHHHHHHHHHHHhhc-CCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchH-HHHHHHHh
Q 007670 17 SDRDTYSQAAKELDSIAATV-DPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYIT-KIINSITR 89 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~L-ppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLp-kIL~~Ivr 89 (594)
.|.+..+.|+..|-.|+..- +... +..+++.|.....+.++.+|..++.+|+.++... .+...+. .+++.++.
T Consensus 227 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~ 306 (530)
T 1wa5_B 227 NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE 306 (530)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH
Confidence 45667888999999999765 2211 2223333444445667899999999999998764 2222222 67888999
Q ss_pred hhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHH
Q 007670 90 NFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRME 164 (594)
Q Consensus 90 rLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~ 164 (594)
.|++++..||.+|+.+|+.|+....... .. .++++|+..| .+.+..++..|+.||..+.....+....++ ..++
T Consensus 307 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL-~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l 385 (530)
T 1wa5_B 307 LLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred HHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 9999999999999999999996542211 11 2777787777 566889999999999999875332222222 2477
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cCCchHH--HHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKG--LVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~pyf~~--lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
+.|+.+|.++++.++..++.+|+.++..+.. ...++-. +++.|..+|.+++..+|..|+++|..|+...
T Consensus 386 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 8899999989999999999999999876432 2233333 7899999999999999999999999999864
No 28
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.17 E-value=1.7e-10 Score=107.95 Aligned_cols=186 Identities=15% Similarity=0.175 Sum_probs=139.9
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc-
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS- 116 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~- 116 (594)
.++|+..| .++++.+|.+++.+|+.++.+. .....+ ...++.+++.|+++++.||..|+.+|+.|+..-.+.
T Consensus 14 ~~~l~~LL----~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 14 LPQMVQQL----NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp HHHHHHHT----TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hHHHHHHh----cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 45555554 3578899999999999998655 221111 257899999999999999999999999999654222
Q ss_pred -hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 117 -AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 117 -~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
.+. ..+++|+..| .+.++.++..|+.||..+....++.....+ ..+++.|+++|++++..++..++.+++.++..
T Consensus 90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111 1778888888 677899999999999999874322111122 23788999999999999999999999998865
Q ss_pred CcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 193 GAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 193 ~~~~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
..... -.-...++.|.+.|.+++..+|..|+.+|+.|+.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 43322 1112478999999999999999999999998863
No 29
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=99.17 E-value=2.3e-10 Score=113.88 Aligned_cols=182 Identities=9% Similarity=0.096 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHH-HHhh---cC--CCChHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh---ccc-cchHHHHHHHH
Q 007670 20 DTYSQAAKELDS-IAAT---VD--PTLLPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH---NLS-PYITKIINSIT 88 (594)
Q Consensus 20 DT~r~A~~eLD~-LA~~---Lp--pe~lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h---~is-phLpkIL~~Iv 88 (594)
.-++-|+..|-. +++. +. ...+..++..|...+ ...++.+|..|+.+||.+|++. .+. +|...++|.|+
T Consensus 31 ~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll 110 (249)
T 2qk1_A 31 KDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLL 110 (249)
T ss_dssp HHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 366778888888 7754 33 233677788887777 5677889999999999999765 567 99999999999
Q ss_pred hhhcCCChhHHHHHHHHHHhhchhhhcc---h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC---cchhH-
Q 007670 89 RNFRDKNSALQATCISTVSSLSPRVGAS---A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP---DAGKL- 160 (594)
Q Consensus 89 rrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~---i~~yL- 160 (594)
.+++|....||+|+..|+-.+++.+... + ...++..|+.+| ...++.++.+++.+|.++++..+.. ..+|+
T Consensus 111 ~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~ 189 (249)
T 2qk1_A 111 DRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM-KHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK 189 (249)
T ss_dssp HGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 9999999999999999999999987211 1 334777788777 5668999999999999999998753 35799
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc-CcC-cCCchHH
Q 007670 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS-GAV-DGSGLKG 202 (594)
Q Consensus 161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a-~~~-~~pyf~~ 202 (594)
+.++|.|.++|+.....+|.++..+++.+..+ |.. +.||++.
T Consensus 190 ~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 190 DEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999999999999999999999999855 433 4466654
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.17 E-value=7.9e-11 Score=112.99 Aligned_cols=209 Identities=15% Similarity=0.188 Sum_probs=153.6
Q ss_pred CChhHHHHHHHHHHHHHhh-------c-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchH--HHHH
Q 007670 17 SDRDTYSQAAKELDSIAAT-------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KIIN 85 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~-------L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLp--kIL~ 85 (594)
+|.+.+..|+..|..++.. + ....++.|+..|.. +++.+|.+++.+|+.++.+. .....+- ..++
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHH
Confidence 4566888888888554332 1 23337777777753 45889999999999998754 2222222 3799
Q ss_pred HHHhhhcCCChhHHHHHHHHHHhhchhhhcc-h-hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-
Q 007670 86 SITRNFRDKNSALQATCISTVSSLSPRVGAS-A-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL- 160 (594)
Q Consensus 86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~-~-~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL- 160 (594)
.+++.|+++++.||..|+.+|+.|+..-... . .. ..+++|+..| .+.++.++..|+.||..+....++. ...+
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~-~~~~~ 177 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ-IQAVI 177 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHH-HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHH-HHHHH
Confidence 9999999999999999999999998765322 1 11 1778888877 6778999999999999998753211 1222
Q ss_pred -HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-CchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 161 -~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
..+++.|+++|++++..++..++.+++.++....... ...+ .+++.|.+.|.+++..+|..|+.+|+.|+.
T Consensus 178 ~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 3367899999999999999999999998874332221 1122 378999999999999999999999998764
No 31
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.17 E-value=5.7e-10 Score=104.30 Aligned_cols=155 Identities=19% Similarity=0.257 Sum_probs=124.6
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
.+.....+.+.+.++++.+|.+++.+||.+.. +..++.+++.|+|++..||.+++.+||.+...-
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~------- 76 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDER------- 76 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-------
Confidence 34445555555667899999999999998754 345788889999999999999999999987543
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL 200 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf 200 (594)
.+.+|...| .+.++.++..|+.+|..+.+ +..++.|.++|++++..++.+++.++|.+..
T Consensus 77 ~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------- 136 (201)
T 3ltj_A 77 AVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------- 136 (201)
T ss_dssp GHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 567777777 77899999999999988643 1245567778899999999999988887631
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 201 ~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
+..++.|..+|.+++|.+|.+|+.+|+.+.
T Consensus 137 ~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 137 ERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 356788899999999999999999999983
No 32
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.14 E-value=5e-10 Score=105.44 Aligned_cols=155 Identities=19% Similarity=0.293 Sum_probs=126.9
Q ss_pred CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc
Q 007670 37 DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS 116 (594)
Q Consensus 37 ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~ 116 (594)
+++.++.++..|. ++++.+|..++..||.+.. +..++.+++.|+|+|..||.+++.+||.+...-
T Consensus 17 ~~~~~~~L~~~L~----~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~--- 81 (211)
T 3ltm_A 17 DPEKVEMYIKNLQ----DDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGDER--- 81 (211)
T ss_dssp CGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG---
T ss_pred CHhHHHHHHHHHc----CCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH---
Confidence 4555888777765 5788999999999998754 466788889999999999999999999987543
Q ss_pred hhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc
Q 007670 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD 196 (594)
Q Consensus 117 ~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~ 196 (594)
.+.+|...| .+.++.++..|+.+|..+.+ +..++.|.++|++++..++..++.++|.+..
T Consensus 82 ----~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 141 (211)
T 3ltm_A 82 ----AVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----- 141 (211)
T ss_dssp ----GHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred ----HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----
Confidence 667777777 78899999999999988743 1245667788999999999999999887621
Q ss_pred CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 197 GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 197 ~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
+..++.|.++|.++++.+|.+|+.+|+.+.
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 346788889999999999999999999984
No 33
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.13 E-value=3e-10 Score=121.88 Aligned_cols=212 Identities=9% Similarity=0.100 Sum_probs=159.4
Q ss_pred CChhHHHHHHHHHHHHHhhc-CC--------CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHHH
Q 007670 17 SDRDTYSQAAKELDSIAATV-DP--------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKII 84 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~L-pp--------e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkIL 84 (594)
+|.+.+..|+..|..++..- ++ ..+|.|+.+|.+. +++.+|.+++.+|+.++.+. -....+ ..++
T Consensus 99 ~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 175 (530)
T 1wa5_B 99 DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN---QPEMLQLEAAWALTNIASGTSAQTKVVVDADAV 175 (530)
T ss_dssp SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCH
Confidence 35567888999998887653 22 2377777777532 26789999999999998754 111222 3568
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-CCCcchh
Q 007670 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAA-QDPDAGK 159 (594)
Q Consensus 85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l-~~~i~~y 159 (594)
+.+++.|++++..||..|+++|+.|+....... .. .++++|+..| .+.+..++..|+.||..++... +.....+
T Consensus 176 ~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 254 (530)
T 1wa5_B 176 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSV 254 (530)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCCCCCCCcHHH
Confidence 888888999999999999999999997642211 11 2788888888 5678899999999999999875 2223445
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-CchH-HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 160 LGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGLK-GLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 160 L~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf~-~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
...+++.|+++|.+++..++..++.+|+.++....... ..+. .+++.|.++|.+.+|.+|..|+.+|+.|+..
T Consensus 255 ~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~ 329 (530)
T 1wa5_B 255 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTG 329 (530)
T ss_dssp HGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcC
Confidence 66788999999999988888889999998885432211 1222 4688999999999999999999999999863
No 34
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.11 E-value=1.6e-09 Score=115.77 Aligned_cols=212 Identities=11% Similarity=0.125 Sum_probs=161.9
Q ss_pred CChhHHHHHHHHHHHHHhhcC-C--------CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHH
Q 007670 17 SDRDTYSQAAKELDSIAATVD-P--------TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKII 84 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lp-p--------e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL 84 (594)
+|.+.+..|+..|..++..-+ + ..+|.|+.+|... ..+.+|.+++.+|+.++.+. .....+ ...+
T Consensus 86 ~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 86 DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 455678889999988876543 1 2378888877531 23789999999999999864 211111 1488
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH
Q 007670 85 NSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (594)
Q Consensus 85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL 160 (594)
+.+++.|++++..||..|+++|+.|+...... ... ..++||+..|....+..++..|+.||..++...+.......
T Consensus 163 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~ 242 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT 242 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 99999999999999999999999998654221 111 17889998885567899999999999999998655555567
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
..+++.|.++|.+++..++..++.+++.++....... ..+ ..+++.|...|.+.++.+|..|+.+|+.|+.
T Consensus 243 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 315 (528)
T 4b8j_A 243 RPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 315 (528)
T ss_dssp TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHc
Confidence 7799999999999998888888888888774332211 111 1468899999999999999999999999987
No 35
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.08 E-value=3.1e-09 Score=104.32 Aligned_cols=186 Identities=13% Similarity=0.099 Sum_probs=134.5
Q ss_pred CCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHH-hhhc
Q 007670 16 LSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSIT-RNFR 92 (594)
Q Consensus 16 LsDrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~Iv-rrLk 92 (594)
|.|.| ....|+..|-.+. +++.++.++.++. ++++.+|..++.+||.+... ...++.+++.+. ..++
T Consensus 32 L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~----d~~~~vR~~A~~aL~~l~~~---~~~~~~l~~~L~~~~~~ 101 (280)
T 1oyz_A 32 LDDHNSLKRISSARVLQLRG---GQDAVRLAIEFCS----DKNYIRRDIGAFILGQIKIC---KKCEDNVFNILNNMALN 101 (280)
T ss_dssp TTCSSHHHHHHHHHHHHHHC---CHHHHHHHHHHHT----CSSHHHHHHHHHHHHHSCCC---TTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHccC---CchHHHHHHHHHc----CCCHHHHHHHHHHHHHhccc---cccchHHHHHHHHHHhc
Confidence 44444 5667777776664 3334777776664 46788999999999877432 223566777777 4678
Q ss_pred CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhc
Q 007670 93 DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLK 172 (594)
Q Consensus 93 D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~ 172 (594)
|+++.||.+++++||.+...... ....++++|...| .+.++.++..|+.+|..+.+ +..++.|.++|+
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~-~~~~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~ 169 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPI-YSPKIVEQSQITA-FDKSTNVRRATAFAISVIND----------KATIPLLINLLK 169 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhccCCc-ccHHHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHc
Confidence 99999999999999998754311 0113667777777 77889999999998876543 124566778888
Q ss_pred CCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 173 SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 173 s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
+++..++..++.++|.+. ..-+.+++.|...|.++++.+|..|+.+|+.+.
T Consensus 170 d~~~~vr~~a~~aL~~~~-------~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININK-------YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp CSSHHHHHHHHHHHHHHT-------CCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhhc-------cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 898889988888888652 123567888899999999999999999999875
No 36
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.04 E-value=2e-09 Score=102.02 Aligned_cols=186 Identities=17% Similarity=0.183 Sum_probs=140.4
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccch-HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphL-pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~ 117 (594)
++.|+.+|. ++++..|.+++.+|+.++... .....+ ..+++.+++.|++++..||..|+.+|+.|+..-.+..
T Consensus 4 i~~L~~~L~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 4 VEKLVKLLT----STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp HHHHHHHTT----CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHH
Confidence 566666665 455889999999999998766 221112 2578999999999999999999999999998642211
Q ss_pred --hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 118 --FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 118 --~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
+. ..+++|+..| .+.++.++..|+.+|..+....++.....+ ...++.|+++|++++..++..++.+++.++..
T Consensus 80 ~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 11 1788888877 678899999999999999863221111111 23788999999999999999999999988754
Q ss_pred CcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 193 GAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 193 ~~~~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
..... -.-..+++.|.++|.++++.+|..|+.+|+.|+.
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 32211 1113478999999999999999999999999986
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.04 E-value=4.7e-09 Score=102.99 Aligned_cols=166 Identities=10% Similarity=0.011 Sum_probs=129.2
Q ss_pred CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch
Q 007670 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (594)
Q Consensus 38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~ 117 (594)
...++.++.+|. ++++.+|.+++.+||.+.. +..++.+++.|+|+++.||.+++++||.+...- ..
T Consensus 22 ~~~i~~L~~~L~----~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~~ 87 (280)
T 1oyz_A 22 KLNDDELFRLLD----DHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KC 87 (280)
T ss_dssp TSCHHHHHHHTT----CSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TT
T ss_pred HhhHHHHHHHHH----cCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--cc
Confidence 445888887775 4688999999999998762 568889999999999999999999999987422 11
Q ss_pred hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC
Q 007670 118 FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG 197 (594)
Q Consensus 118 ~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~ 197 (594)
...+++.|...+.++.++.++..|+.||..+....+ .+.+.+++.|.++|++++..++..++.++|.+..
T Consensus 88 ~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------ 157 (280)
T 1oyz_A 88 EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------ 157 (280)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------
Confidence 122344444345578899999999999999876432 3456788899999999999999888888875321
Q ss_pred CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 198 SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 198 pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
+..++.|.+.|.++++.+|..|+.+|+.+.
T Consensus 158 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 158 ---KATIPLLINLLKDPNGDVRNWAAFAININK 187 (280)
T ss_dssp ----CCHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhhc
Confidence 235788888999999999999999999883
No 38
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.04 E-value=4.8e-09 Score=115.50 Aligned_cols=237 Identities=14% Similarity=0.109 Sum_probs=135.7
Q ss_pred cCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcC
Q 007670 15 KLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRD 93 (594)
Q Consensus 15 KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD 93 (594)
-|.|.++.--++. |..|+.--.++-.+.+++.|.....+++|.+||.|+.+++.++... -+.++ +.+++.+.+.|.|
T Consensus 94 dL~~~n~~ir~~A-L~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~-~~~~~~l~~lL~d 171 (591)
T 2vgl_B 94 DCEDPNPLIRALA-VRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED-QGFLDSLRDLIAD 171 (591)
T ss_dssp GSSSSSHHHHHHH-HHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH-HHHHHHHHHTTSC
T ss_pred HcCCCCHHHHHHH-HHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc-ccHHHHHHHHhCC
Confidence 3455553322222 4445544455445555555655556667777777777777766643 11111 3466777777777
Q ss_pred CChhHHHHHHHHHHhhchhhhcc---h-hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 007670 94 KNSALQATCISTVSSLSPRVGAS---A-FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLER 169 (594)
Q Consensus 94 ~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~k 169 (594)
+|+.||.+|+.+|+.++..-.+. . ....+..|+..| .+.++-.|....-+|..+. ....+....+++.+..
T Consensus 172 ~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l-~~~~~~~q~~il~~l~~l~----~~~~~~~~~~l~~l~~ 246 (591)
T 2vgl_B 172 SNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL-NECTEWGQIFILDCLSNYN----PKDDREAQSICERVTP 246 (591)
T ss_dssp SCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHTSC----CCSHHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-CCCCchHHHHHHHHHHHhC----CCChHHHHHHHHHHHH
Confidence 77777777777777766654211 0 112455555555 3455666654443332222 2222345667777888
Q ss_pred HhcCCchhhHHHHHHHHHHHHhcCcCcCCch----HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670 170 LLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL----KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (594)
Q Consensus 170 lL~s~~fkaK~alL~aIGSiA~a~~~~~pyf----~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m 245 (594)
+|++.+..+.-.++.+|+.+...-......+ ..+.+.|. +|.+.|..+|-+|+.+|+.|+...++.|.++...++
T Consensus 247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~ 325 (591)
T 2vgl_B 247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-TLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFF 325 (591)
T ss_dssp CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-HHTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS
T ss_pred HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-HHhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhhe
Confidence 8888876655555555544321100111233 34445555 455689999999999999999988888887755432
Q ss_pred HHHHhcchhH-------HHHHHhhcC
Q 007670 246 KIFESKRFDK-------MIEAWKQVP 264 (594)
Q Consensus 246 ~sLEs~RfDK-------~i~lWk~i~ 264 (594)
|.+|. ++++|-.+.
T Consensus 326 -----~~~~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 326 -----VKYNDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp -----CCTTSCHHHHHHHHHHHHHTC
T ss_pred -----eccCChHHHHHHHHHHHHHHC
Confidence 44442 788887776
No 39
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=99.03 E-value=8.8e-10 Score=129.23 Aligned_cols=171 Identities=10% Similarity=0.073 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhhcCCCC-hH----HHHHhhhhcC---CCCCCcchHHHHHHHHHHHhhh-c-------cccchHHHHH
Q 007670 22 YSQAAKELDSIAATVDPTL-LP----TFLSCILSTN---SSDKPGVRKECIHVIATLSNSH-N-------LSPYITKIIN 85 (594)
Q Consensus 22 ~r~A~~eLD~LA~~Lppe~-lp----~fLs~L~e~~---ss~kp~~RKaaI~lLGvlae~h-~-------isphLpkIL~ 85 (594)
.|--+..|......+.|+. +. .+...+.++. .+.+|..+.+++.+|+.++|++ . ..+++|.|++
T Consensus 414 ~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ 493 (980)
T 3ibv_A 414 MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQ 493 (980)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHH
Confidence 4444456666666666666 66 5666666654 2567999999999999999998 2 2378999999
Q ss_pred HHHhhhc-----CCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc-----CCChhHHHHHHHHHHHHHhhcCCC
Q 007670 86 SITRNFR-----DKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT-----EQDTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 86 ~IvrrLk-----D~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~-----eq~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
.+.+.++ ++.+.||.++++++|++++|+...+ .++.|++.++++ ++++.||.+||+++.++|+.+...
T Consensus 494 ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~--~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 494 ILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYES--AAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp HHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC--TTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc--hhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 9999877 9999999999999999999997655 488888888875 567889999999999999999988
Q ss_pred cchhHHHHHHHHHHHhcCC---------------------chhhHHHHHHHHHHHHhcCc
Q 007670 156 DAGKLGRMEVRLERLLKSE---------------------VFKAKAAGLVVVGSVIGSGA 194 (594)
Q Consensus 156 i~~yL~~L~~RL~klL~s~---------------------~fkaK~alL~aIGSiA~a~~ 194 (594)
+.+|++.|+..+..+|.-. .|...--+..+||.++++.+
T Consensus 572 L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~ 631 (980)
T 3ibv_A 572 VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN 631 (980)
T ss_dssp CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence 8899999999988888631 13344558888888886643
No 40
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.98 E-value=7.6e-09 Score=119.68 Aligned_cols=225 Identities=8% Similarity=0.025 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHhhc-----CCC------ChHHH-HHhhhhcCCCC---CCcchHHHHHHHHHHHhhhccccchHHHHH
Q 007670 21 TYSQAAKELDSIAATV-----DPT------LLPTF-LSCILSTNSSD---KPGVRKECIHVIATLSNSHNLSPYITKIIN 85 (594)
Q Consensus 21 T~r~A~~eLD~LA~~L-----ppe------~lp~f-Ls~L~e~~ss~---kp~~RKaaI~lLGvlae~h~isphLpkIL~ 85 (594)
....|+-.|-.||..+ +.. .+.+| ...+.+.+.++ .|.+|..++.++|..++.. -..+++.+++
T Consensus 421 ~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~l~~~l~ 499 (960)
T 1wa5_C 421 FKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQLIELMP 499 (960)
T ss_dssp HHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHHHHHHHH
Confidence 5567888888898653 222 55454 45555544445 7899999999999998753 3358999999
Q ss_pred HHHhhhcCCChhHHHHHHHHHHhhchhhh----------cchhHHhHHHHHHHHc---cCCC---hh--HHHHHHHHHHH
Q 007670 86 SITRNFRDKNSALQATCISTVSSLSPRVG----------ASAFVTMLKLLSDALF---TEQD---TN--AQVGAALCLAA 147 (594)
Q Consensus 86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~----------~~~~~~~lkPL~eaL~---~eq~---k~--vQ~~Aa~ALaa 147 (594)
.+++.|.|++..||.+|+.|+..|++... ...+.-++.+|+..|+ ++.. .. ....+..||..
T Consensus 500 ~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~ 579 (960)
T 1wa5_C 500 ILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFR 579 (960)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHH
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHH
Confidence 99999999999999999999999998642 1112226666666554 2220 11 44688999999
Q ss_pred HHhhcCCCcchhHHHHHHHHHHHhcC----C-chhhHHHHHHHHHHHHhcC-cC-cCCchHHHHHHHHhhhcCCcHHHHH
Q 007670 148 TIDAAQDPDAGKLGRMEVRLERLLKS----E-VFKAKAAGLVVVGSVIGSG-AV-DGSGLKGLVSCLLGFLSSQDWAARK 220 (594)
Q Consensus 148 vvE~l~~~i~~yL~~L~~RL~klL~s----~-~fkaK~alL~aIGSiA~a~-~~-~~pyf~~lm~~L~e~L~seDw~lRK 220 (594)
+++.+++.+.||+..||++|...+.. + +......++++||+++.+. .+ ..+|.+.+||.+...|..+....+-
T Consensus 580 vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~ 659 (960)
T 1wa5_C 580 VLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIP 659 (960)
T ss_dssp HHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 99999999999999999998887742 3 3344556899999999873 23 3478888999998888766555666
Q ss_pred HHHHHHHHHHHHcCCccchhhhHHHHH
Q 007670 221 AAAEALWRLAVVEKDAVPEFKGKCLKI 247 (594)
Q Consensus 221 aAaDaLg~IA~a~gd~f~py~~~~m~s 247 (594)
.+.+.++.+.... +.|.||...++..
T Consensus 660 ~~~~i~~~l~~~~-~~~~~~~~~~~~~ 685 (960)
T 1wa5_C 660 YVFQIIAFVVEQS-ATIPESIKPLAQP 685 (960)
T ss_dssp HHHHHHHHHHHHC-SSCCTTTGGGHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHH
Confidence 7888888887766 5666665555443
No 41
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.95 E-value=8.2e-09 Score=98.87 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=138.5
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHH-Hhhh-ccccch-HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATL-SNSH-NLSPYI-TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA 117 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvl-ae~h-~isphL-pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~ 117 (594)
++.|+..|. ++++..|..++.+|..+ +... .....+ ..+++.+++.|++++..||..|+.+|+.|+..-.+..
T Consensus 14 ~~~~~~~L~----s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 14 LPQMTQQLN----SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp HHHHHHHHH----SSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 788888876 46778999999999654 4322 211111 2578999999999999999999999999997543221
Q ss_pred --hHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 118 --FVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 118 --~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
... .+++|+..| .+.++.++..|+.||..+...........+. ..++.|+++|++++..++..++.+++.++..
T Consensus 90 ~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 111 678888777 6678999999999999997753221111222 2788999999999999999999999988754
Q ss_pred CcCcCCc--hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 193 GAVDGSG--LKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 193 ~~~~~py--f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
....... -..+++.|.+.|.+++..+|..|+.+|+.|+.
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 3222111 13468999999999999999999999999984
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.91 E-value=6e-08 Score=99.34 Aligned_cols=184 Identities=17% Similarity=0.201 Sum_probs=136.4
Q ss_pred HHHHHHHHHhhcC-----------CChhHHHHHHHHHHHHHhhcC-------CCChHHHHH-hhhhcCCCCCCcchHHHH
Q 007670 4 ALKTSVNGLLNKL-----------SDRDTYSQAAKELDSIAATVD-------PTLLPTFLS-CILSTNSSDKPGVRKECI 64 (594)
Q Consensus 4 ~Lk~rvl~~L~KL-----------sDrDT~r~A~~eLD~LA~~Lp-------pe~lp~fLs-~L~e~~ss~kp~~RKaaI 64 (594)
++.+.++++|.-- ++.+....|+..|..++.+++ ...+|+|+. +|. ++++.+|..|+
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~----s~~~~vr~~Aa 103 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE----AGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT----CSSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc----CCCHHHHHHHH
Confidence 4556666776642 122466778888888887654 222788888 664 57889999999
Q ss_pred HHHHHHHhhh-ccccch--HHHHHHHHhhhc-CCChhHHHHHHHHHHhhchhhhcc--hhHH--hHHHHHHHHccCCChh
Q 007670 65 HVIATLSNSH-NLSPYI--TKIINSITRNFR-DKNSALQATCISTVSSLSPRVGAS--AFVT--MLKLLSDALFTEQDTN 136 (594)
Q Consensus 65 ~lLGvlae~h-~isphL--pkIL~~IvrrLk-D~Ds~VR~Ac~~ALG~LAe~l~~~--~~~~--~lkPL~eaL~~eq~k~ 136 (594)
.+||.++... .....+ ...+|.+++.|+ |++..||..|++||+.|+..-... .+.. .+++|+..| ...+..
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL-~~~d~~ 182 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQK 182 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHH-cCCCHH
Confidence 9999998654 111111 146677777777 678999999999999998765322 2222 788888888 567999
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhHHH--HHHHHHHHhcCCchhhHHHHHHHHHHHHhcC
Q 007670 137 AQVGAALCLAATIDAAQDPDAGKLGR--MEVRLERLLKSEVFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 137 vQ~~Aa~ALaavvE~l~~~i~~yL~~--L~~RL~klL~s~~fkaK~alL~aIGSiA~a~ 193 (594)
+|..||.||..++.+ .+....++-. .+++|+.+|++++..++..++.+|+.++...
T Consensus 183 v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 183 LKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 999999999999987 3333445544 8899999999999999999999999999663
No 43
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.90 E-value=1.4e-07 Score=103.77 Aligned_cols=219 Identities=13% Similarity=0.158 Sum_probs=133.3
Q ss_pred CChh--HHHHHHHHHHHHHhhcCCCChH--HHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--c-----ccc-------
Q 007670 17 SDRD--TYSQAAKELDSIAATVDPTLLP--TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--N-----LSP------- 78 (594)
Q Consensus 17 sDrD--T~r~A~~eLD~LA~~Lppe~lp--~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~-----isp------- 78 (594)
.|++ -++.|+-.|-.+.. ..|+.++ .+++.|.+...++++.+|.+|+.+|+.++... . ..+
T Consensus 131 ~d~~~~VRk~A~~al~~i~~-~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~ 209 (591)
T 2vgl_B 131 KDEDPYVRKTAAVCVAKLHD-INAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT 209 (591)
T ss_dssp SCSCHHHHHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHh-hChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH
Confidence 4555 66889999999988 5677766 58889988888899999999999999997642 0 001
Q ss_pred --------------------------chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--h----hHHhHHHHH
Q 007670 79 --------------------------YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--A----FVTMLKLLS 126 (594)
Q Consensus 79 --------------------------hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~----~~~~lkPL~ 126 (594)
....+++.+...|++.++.|+-+|+.+++.+...+... . ...+..||+
T Consensus 210 ~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~ 289 (591)
T 2vgl_B 210 ALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289 (591)
T ss_dssp HHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH
T ss_pred cCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 12456777778899999999999999999998655211 1 123667777
Q ss_pred HHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHH
Q 007670 127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSC 206 (594)
Q Consensus 127 eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~ 206 (594)
..+ . .+++++-.|..+|..++..-++...+++.. ++ ++.+++..+|..++..++.++.. ...+.+++.
T Consensus 290 ~L~-~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~----~~-~~~~d~~~Ir~~al~~L~~l~~~-----~nv~~iv~~ 357 (591)
T 2vgl_B 290 TLL-S-GEPEVQYVALRNINLIVQKRPEILKQEIKV----FF-VKYNDPIYVKLEKLDIMIRLASQ-----ANIAQVLAE 357 (591)
T ss_dssp HHT-T-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTT----TS-CCTTSCHHHHHHHHHHHHHTCCS-----STHHHHHHH
T ss_pred HHh-c-CCccHHHHHHHHHHHHHHhChHHHHHHHHh----he-eccCChHHHHHHHHHHHHHHCCh-----hhHHHHHHH
Confidence 543 3 789999999999999998654433332211 11 11122233444444444433211 113344444
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHH
Q 007670 207 LLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF 248 (594)
Q Consensus 207 L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sL 248 (594)
|.+|+.+.||..|+.++.+|+.+|....+.+.-|..-+++.+
T Consensus 358 L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll 399 (591)
T 2vgl_B 358 LKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLI 399 (591)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 445554445555555555555544433333333333333333
No 44
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.80 E-value=9.1e-08 Score=110.14 Aligned_cols=243 Identities=10% Similarity=0.075 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHhhcCCC---ChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCC
Q 007670 21 TYSQAAKELDSIAATVDPT---LLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKN 95 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe---~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~D 95 (594)
....|+-.|-.+++.++.. .++.++..+.+... .+.|.+|..++.++|..++-. --..||+.+++.|+++| |
T Consensus 480 ~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~-- 556 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N-- 556 (971)
T ss_dssp HHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--
Confidence 5566777777788777542 27888885544332 247889999999999998765 23379999999999999 5
Q ss_pred hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cC--CChhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHH-
Q 007670 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TE--QDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLE- 168 (594)
Q Consensus 96 s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~e--q~k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~- 168 (594)
+.|+.+|+.|+..|++.+... ..-++.+|+..|+ .. -+...+..+.-|+..++..++ +...+|+..|++.+.
T Consensus 557 ~~v~~~A~~al~~l~~~~~~~-l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~ 635 (971)
T 2x1g_F 557 SSMSAQATLGLKELCRDCQLQ-LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFE 635 (971)
T ss_dssp SSCHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999877321 2225556655553 33 356788899999999998876 334667766555544
Q ss_pred ---HHhcCCc--hhhH---HHHHHHHHHHHhcCc--------------CcCCchHHHHHHHHhhhcC--CcHHHHHHHHH
Q 007670 169 ---RLLKSEV--FKAK---AAGLVVVGSVIGSGA--------------VDGSGLKGLVSCLLGFLSS--QDWAARKAAAE 224 (594)
Q Consensus 169 ---klL~s~~--fkaK---~alL~aIGSiA~a~~--------------~~~pyf~~lm~~L~e~L~s--eDw~lRKaAaD 224 (594)
.+++.+. -..+ ...++.|+.++++-+ .+.+|++.+|+.+...+.. ++-.+...++.
T Consensus 636 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~ 715 (971)
T 2x1g_F 636 ELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACS 715 (971)
T ss_dssp HHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4444432 1122 235556666654311 1237888889988887753 46688999999
Q ss_pred HHHHHHHHcCCccchhhhHHHHHH----HhcchhHHHHHHhhcCCCC
Q 007670 225 ALWRLAVVEKDAVPEFKGKCLKIF----ESKRFDKMIEAWKQVPDLS 267 (594)
Q Consensus 225 aLg~IA~a~gd~f~py~~~~m~sL----Es~RfDK~i~lWk~i~~v~ 267 (594)
+++.++...|+.|.||...++..+ ++.+..-.+.+=..+-..+
T Consensus 716 ~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~l~~~~i~~~ 762 (971)
T 2x1g_F 716 AMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAPTLEISKTAIVMF 762 (971)
T ss_dssp HHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 999999999988999987777433 3333333555555555443
No 45
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.77 E-value=4.5e-08 Score=91.35 Aligned_cols=170 Identities=12% Similarity=0.179 Sum_probs=126.2
Q ss_pred cCCChhHHHHHHHHHHHHHhhcC--------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHH
Q 007670 15 KLSDRDTYSQAAKELDSIAATVD--------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKI 83 (594)
Q Consensus 15 KLsDrDT~r~A~~eLD~LA~~Lp--------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkI 83 (594)
+=.|.+.+..|+..|-.|+..-+ ...++.++.+|. ++++.+|.+++.+|+.++.+. .....+ ...
T Consensus 22 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (210)
T 4db6_A 22 NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS----SPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (210)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCC
Confidence 33566788889999988885321 222666666665 457889999999999998654 111111 236
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (594)
Q Consensus 84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y 159 (594)
++.+++.|++++..||..|+++|+.|+..-.+.. .. .++++|+..| .+.++.++..|+.||..++...++. ...
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~v~~~a~~aL~~l~~~~~~~-~~~ 175 (210)
T 4db6_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQ-KQA 175 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHH-HHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCcHH-HHH
Confidence 8899999999999999999999999997543221 11 2788888888 5678999999999999999853221 222
Q ss_pred HH--HHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670 160 LG--RMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 160 L~--~L~~RL~klL~s~~fkaK~alL~aIGSiA 190 (594)
+- ..++.|.++|.+++..++..++.+++.++
T Consensus 176 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 22 37889999999999999999999998765
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.77 E-value=2.9e-08 Score=110.25 Aligned_cols=221 Identities=12% Similarity=0.088 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHH
Q 007670 21 TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQA 100 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~ 100 (594)
....|+..|-.|+ .++-++.+++.|.....+++|++||.|+.+++.+...+ -..++.+++.+...|.|+|+.|+.
T Consensus 123 vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~--p~~v~~~~~~l~~lL~D~d~~V~~ 197 (618)
T 1w63_A 123 VQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV--PELMEMFLPATKNLLNEKNHGVLH 197 (618)
T ss_dssp HHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC--GGGGGGGGGGTTTSTTCCCHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhCCCCHhHHH
Confidence 3445555555544 34445666677766777789999999999999998876 012346778888999999999999
Q ss_pred HHHHHHHhhchhhhcc--hhHHhHHHHHHHHcc--------------CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHH
Q 007670 101 TCISTVSSLSPRVGAS--AFVTMLKLLSDALFT--------------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRME 164 (594)
Q Consensus 101 Ac~~ALG~LAe~l~~~--~~~~~lkPL~eaL~~--------------eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~ 164 (594)
+|+.+++.++..-.+. .+..+++.|+..|.. ..++-.|....-+|..++..-++ ..+.+-.++
T Consensus 198 ~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~-~~~~~~~~L 276 (618)
T 1w63_A 198 TSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD-SSEAMNDIL 276 (618)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH-HHHTTHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 9999999998764221 111133444443321 24788888877777777653110 011122233
Q ss_pred HHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHH
Q 007670 165 VRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (594)
Q Consensus 165 ~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~ 244 (594)
+++.+-+.+......+.+++|+..+...... ......++..|..||.+.|-.+|-+|+++|+.|+...++.|.+|...+
T Consensus 277 ~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i 355 (618)
T 1w63_A 277 AQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTI 355 (618)
T ss_dssp HHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHH
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHH
Confidence 3333222221122334455555555543221 111234566777777776777777777777777776666666655544
Q ss_pred HHHH
Q 007670 245 LKIF 248 (594)
Q Consensus 245 m~sL 248 (594)
+..+
T Consensus 356 ~~~l 359 (618)
T 1w63_A 356 VDCL 359 (618)
T ss_dssp HHGG
T ss_pred HHHc
Confidence 4443
No 47
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.75 E-value=1.2e-07 Score=102.46 Aligned_cols=212 Identities=12% Similarity=0.123 Sum_probs=153.5
Q ss_pred CChhHHHHHHHHHHHHHhh--cCC------CC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchH--HHH
Q 007670 17 SDRDTYSQAAKELDSIAAT--VDP------TL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYIT--KII 84 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~--Lpp------e~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLp--kIL 84 (594)
+|.+.+..|++.+..|... -|| .. +|+|+.+|.. ++.+..+.+|..+|+.+|.+- -....+- -.+
T Consensus 69 ~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~---~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaI 145 (510)
T 3ul1_B 69 NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAI 145 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTC---TTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCC---CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCH
Confidence 5667888899999886422 122 12 7888888853 355788999999999998754 1111111 368
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCC----ChhHHHHHHHHHHHHHhhcCCCc
Q 007670 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQ----DTNAQVGAALCLAATIDAAQDPD 156 (594)
Q Consensus 85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq----~k~vQ~~Aa~ALaavvE~l~~~i 156 (594)
|.+++.|++++..||..|++||+.||....... .. ..+.||+..|.... ...++..++.+|..++.+-....
T Consensus 146 p~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~ 225 (510)
T 3ul1_B 146 PAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP 225 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchh
Confidence 899999999999999999999999987653211 11 17888888884221 23456678888888887653332
Q ss_pred -chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC--CchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 157 -AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG--SGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 157 -~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~--pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
......+++-|.++|.+++..++..++.+++.++....... -.-..+++.|.++|.++++.+|..|+.+|+.|+.
T Consensus 226 ~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~ 303 (510)
T 3ul1_B 226 PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT 303 (510)
T ss_dssp CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhc
Confidence 45667899999999999999988888888887764332211 1112367889999999999999999999999865
No 48
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.75 E-value=8.1e-08 Score=103.96 Aligned_cols=214 Identities=16% Similarity=0.175 Sum_probs=155.8
Q ss_pred CChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh-cc--ccchHHHH
Q 007670 17 SDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH-NL--SPYITKII 84 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~L--------ppe~lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h-~i--sphLpkIL 84 (594)
.|.+....|+..|-.||.+= ....+++++.+|.... ........+.+..+|..++.+. .. .-.+..++
T Consensus 174 ~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 253 (529)
T 3tpo_A 174 PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 253 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHH
Confidence 46668888888888888642 2334889999886542 2223345677777888887766 22 22457899
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH
Q 007670 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (594)
Q Consensus 85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL 160 (594)
|.+++.|++++..|+..++++|+.++..-.+.. .. .++++|++.| ...+..+|..|+.||..++...+. ....+
T Consensus 254 p~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~-~~~~i 331 (529)
T 3tpo_A 254 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDE-QTQKV 331 (529)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHH-HHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHh-cCCChhHHHHHHHHHHHHHccchH-HHHHH
Confidence 999999999999999999999999987653221 11 1778888877 678899999999999988754221 11111
Q ss_pred --HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-Cch-HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 161 --GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 161 --~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
...++.|.++|++++..+|..+..+|+-++....... ..+ ..++|.|...|.+.++.+|+.|+-+|+.++..
T Consensus 332 ~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 1256678899999998899888999998875432221 111 24789999999999999999999999999864
No 49
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.73 E-value=5.6e-07 Score=103.02 Aligned_cols=222 Identities=13% Similarity=0.072 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCCh
Q 007670 21 TYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNS 96 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds 96 (594)
....|+-.|-.++..++.+. ++.++..+.. ..++.|.+|..++.++|..++.. .-.+||+.+++.|+..|.| +
T Consensus 465 ~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~ 541 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--P 541 (963)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--G
T ss_pred HHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--c
Confidence 55667888888888886432 6777776654 34457789999999999998764 2236899999999999977 7
Q ss_pred hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cC--CChhHHHHHHHHHHHHHhhcC-CCcchhHHHHHHHHHHH
Q 007670 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TE--QDTNAQVGAALCLAATIDAAQ-DPDAGKLGRMEVRLERL 170 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~e--q~k~vQ~~Aa~ALaavvE~l~-~~i~~yL~~L~~RL~kl 170 (594)
.|+.+|+.|+..|++.+.+. +.-++.+|+..|+ .. -+...+..+.-|+..++..++ +...+|+..+|+.+...
T Consensus 542 ~V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~ 620 (963)
T 2x19_B 542 ELSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQ 620 (963)
T ss_dssp GGHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999876432 2224455544442 22 356778888999999998876 44578888888776666
Q ss_pred hc----CC-chhh---HHHHHHHHHHHHhcCcC-----------------------cCCchHHHHHHHHhhhc--CCcHH
Q 007670 171 LK----SE-VFKA---KAAGLVVVGSVIGSGAV-----------------------DGSGLKGLVSCLLGFLS--SQDWA 217 (594)
Q Consensus 171 L~----s~-~fka---K~alL~aIGSiA~a~~~-----------------------~~pyf~~lm~~L~e~L~--seDw~ 217 (594)
++ ++ +... ...++++|++++.+-+. ..+++..+++.+...|. .++-.
T Consensus 621 l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 700 (963)
T 2x19_B 621 LEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ 700 (963)
T ss_dssp HHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchH
Confidence 53 22 2222 23577888888855321 12467778887777664 24568
Q ss_pred HHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670 218 ARKAAAEALWRLAVVEKDAVPEFKGKCLK 246 (594)
Q Consensus 218 lRKaAaDaLg~IA~a~gd~f~py~~~~m~ 246 (594)
++..++.+++.++...|+.|.||...++.
T Consensus 701 v~e~~~~~l~~~~~~~~~~~~~~l~~~~~ 729 (963)
T 2x19_B 701 VVEAVCAIFEKSVKTLLDDFAPMVPQLCE 729 (963)
T ss_dssp HHHHHHHHHHHHHHHSSSTTGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccccHHHHHH
Confidence 88899999999999999989999877764
No 50
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.9e-07 Score=92.98 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=139.3
Q ss_pred hhhcCCCCCCcchHHHHHHHHHHHhhh-c------cccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc----
Q 007670 48 ILSTNSSDKPGVRKECIHVIATLSNSH-N------LSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS---- 116 (594)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvlae~h-~------isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~---- 116 (594)
|.+-+.|-+|-.|++|+-.|..+.... . ..+.+..+++.+.+.+.|++..|...+++++..|+..+...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 346677899999999999998876654 1 12235567788889999999999999999999999876421
Q ss_pred h----h-HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670 117 A----F-VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 117 ~----~-~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~ 191 (594)
. . ..+++.|++-.+++..+.+...|..||..+++... .+..+++.+...+++.+.+++...+..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 1 12777788775577888888888888888888643 234566778889999999999999999998774
Q ss_pred c-CcC-c--CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCc
Q 007670 192 S-GAV-D--GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDA 236 (594)
Q Consensus 192 a-~~~-~--~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~ 236 (594)
. |.. . .+.++.+++.|..+|.+.|-.+|.+|.++++.|-..+|+.
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 4 211 1 1456678888888899999999999999999999888853
No 51
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.71 E-value=1.3e-07 Score=102.32 Aligned_cols=211 Identities=14% Similarity=0.200 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHhhcCCCC----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc--hHHHHHHHHhhhcCC
Q 007670 22 YSQAAKELDSIAATVDPTL----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY--ITKIINSITRNFRDK 94 (594)
Q Consensus 22 ~r~A~~eLD~LA~~Lppe~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph--LpkIL~~IvrrLkD~ 94 (594)
.+.|+..|-.++.+-.+.. +..+++.|.....++++.++..+..+|+.++.+. ..... -..+++.++..|.++
T Consensus 226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~ 305 (529)
T 3tpo_A 226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305 (529)
T ss_dssp HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence 4567777777777653322 3445666666667788899999999999998765 11111 134678888899999
Q ss_pred ChhHHHHHHHHHHhhchhhhcch--hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-HHHHHHHH
Q 007670 95 NSALQATCISTVSSLSPRVGASA--FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLER 169 (594)
Q Consensus 95 Ds~VR~Ac~~ALG~LAe~l~~~~--~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~L~~RL~k 169 (594)
+..|+..|+.+||.++..-.... .. ..+++|...| ...++.+|..||.||..+..+..+.....+. .+++.|+.
T Consensus 306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL-~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~ 384 (529)
T 3tpo_A 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 384 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT-TCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH-cCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHH
Confidence 99999999999999986543221 11 1777777777 6788999999999999998753322211222 27888999
Q ss_pred HhcCCchhhHHHHHHHHHHHHhcCcC-cCCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc
Q 007670 170 LLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAVVE 233 (594)
Q Consensus 170 lL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~ 233 (594)
+|.+.++.+|..+..+|+-++..+.. ...|+- .+|+.|.+.|.+.|..++..++++|..|....
T Consensus 385 lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~ 451 (529)
T 3tpo_A 385 VLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451 (529)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988754422 112221 25788999999999999999999999998753
No 52
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.64 E-value=1.2e-07 Score=102.34 Aligned_cols=215 Identities=15% Similarity=0.157 Sum_probs=154.5
Q ss_pred CChhHHHHHHHHHHHHHhhc--------CCCChHHHHHhhhhcC-CCCCCcchHHHHHHHHHHHhhh-ccc--cchHHHH
Q 007670 17 SDRDTYSQAAKELDSIAATV--------DPTLLPTFLSCILSTN-SSDKPGVRKECIHVIATLSNSH-NLS--PYITKII 84 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~L--------ppe~lp~fLs~L~e~~-ss~kp~~RKaaI~lLGvlae~h-~is--phLpkIL 84 (594)
.|.+....|+..|-.||.+- ....+++++.+|.... ........+.+..+|..++.+. ... ..+..++
T Consensus 155 ~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~l 234 (510)
T 3ul1_B 155 PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 234 (510)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHH
Confidence 46678889999999888642 2344888888886432 2223345677888888888766 222 2457899
Q ss_pred HHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH
Q 007670 85 NSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL 160 (594)
Q Consensus 85 ~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL 160 (594)
|.+++.|++++..|+..++++|+.|+..-.+.. .. .++++|++.| ...+..+|..|+.||..++-..+......+
T Consensus 235 p~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~ 313 (510)
T 3ul1_B 235 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTPALRAIGNIVTGTDEQTQKVI 313 (510)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhh-cCCChhhhhHHHHHHHHhhcCCHHHHHHHh
Confidence 999999999999999999999999997653221 11 1677888877 678899999999999988754221111111
Q ss_pred -HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-Cc-hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 161 -GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SG-LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 161 -~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-py-f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
...++.|.++|++++..+|..+..+|+-++....... .. -..+++.|...|.+.++.+|+.|+-+|+.++..
T Consensus 314 ~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 1255668889999998898888888888764322211 11 124789999999999999999999999998874
No 53
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=98.64 E-value=1.5e-07 Score=111.68 Aligned_cols=221 Identities=10% Similarity=0.020 Sum_probs=158.2
Q ss_pred HHHHHHHhhcCCCC-hHHHHHhhhhcCC--CCCCcchHHHHHHHHHHHhhhc----cccchHHHHHHHHhhhcCC-----
Q 007670 27 KELDSIAATVDPTL-LPTFLSCILSTNS--SDKPGVRKECIHVIATLSNSHN----LSPYITKIINSITRNFRDK----- 94 (594)
Q Consensus 27 ~eLD~LA~~Lppe~-lp~fLs~L~e~~s--s~kp~~RKaaI~lLGvlae~h~----isphLpkIL~~IvrrLkD~----- 94 (594)
+.|..++ +|.++. +..+++.|..... ...|..+.+.+-++|.++ |+. =.++||.+|+.++.....+
T Consensus 461 d~L~~lt-~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa-g~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~ 538 (1073)
T 3gjx_A 461 ETLVYLT-HLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS-GAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN 538 (1073)
T ss_dssp HHHHHHH-HHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT-TSSCHHHHHHHHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH-CcCCcccccchHHHHHHHHhcccccccccch
Confidence 4444444 666555 8888888765433 356899999999999998 552 3479999999999777433
Q ss_pred ChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcCCC--------cchhHHHH
Q 007670 95 NSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQDP--------DAGKLGRM 163 (594)
Q Consensus 95 Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~~~--------i~~yL~~L 163 (594)
-..|+...++++|++.+|+...+ .||+|.+..|+ .+.++.||.+||.|+.++++.+... ..||+..|
T Consensus 539 k~~vas~i~~vlgrY~~wl~~h~--~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~i 616 (1073)
T 3gjx_A 539 KAIIASNIMYIVGQYPRFLRAHW--KFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEI 616 (1073)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCH--HHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHhCH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHH
Confidence 56788888999999999996554 35565555554 5789999999999999999997543 24688998
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc---CCchHHHHHHHHhhhc--------------CCcHHHHH-HHHHH
Q 007670 164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD---GSGLKGLVSCLLGFLS--------------SQDWAARK-AAAEA 225 (594)
Q Consensus 164 ~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~---~pyf~~lm~~L~e~L~--------------seDw~lRK-aAaDa 225 (594)
+.-+......=..+....++.+||.++.+.+.. ..|+..+|+.+...+. +.++--+- ..+++
T Consensus 617 l~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~ 696 (1073)
T 3gjx_A 617 LNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKT 696 (1073)
T ss_dssp HTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhh
Confidence 888888775545666777999999999776442 3566666655544432 22332222 34567
Q ss_pred HHHHHHHcCCccchhhhHHH-HHHHhc
Q 007670 226 LWRLAVVEKDAVPEFKGKCL-KIFESK 251 (594)
Q Consensus 226 Lg~IA~a~gd~f~py~~~~m-~sLEs~ 251 (594)
..++|.+.|..|.|+...+. ..|+-+
T Consensus 697 n~~v~~~~g~~f~~~~~~i~~~~l~~y 723 (1073)
T 3gjx_A 697 NVRACKAVGHPFVIQLGRIYLDMLNVY 723 (1073)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred hHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 78889999999999987775 344433
No 54
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.64 E-value=2.3e-07 Score=95.05 Aligned_cols=174 Identities=15% Similarity=0.132 Sum_probs=127.2
Q ss_pred chHHHHHHHHHHHhhh-cccc-chHHHHHHHHh-hhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHcc
Q 007670 59 VRKECIHVIATLSNSH-NLSP-YITKIINSITR-NFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFT 131 (594)
Q Consensus 59 ~RKaaI~lLGvlae~h-~isp-hLpkIL~~Ivr-rLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~ 131 (594)
.|..++-.|..+++.. .... .---.+|.++. .|+.+++.||..|+++||.++..-.+. -.. ..++||+..|..
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~ 135 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR 135 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 5666777777777654 1101 11124566777 999999999999999999998754321 111 288999988854
Q ss_pred CCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchH--HHHHHHH
Q 007670 132 EQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLK--GLVSCLL 208 (594)
Q Consensus 132 eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~--~lm~~L~ 208 (594)
+.+..++..|+.||..++.+-++.....+ ...++.|..+|++++++++.-++.+|+.++....+...++- .+++.|.
T Consensus 136 ~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv 215 (296)
T 1xqr_A 136 DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 215 (296)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHH
Confidence 56789999999999999875332111122 13778899999999999999999999998865433323332 3789999
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 209 GFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 209 e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
+.|.++|..+|..|+.+|+.|+..
T Consensus 216 ~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 216 ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999975
No 55
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.52 E-value=1.8e-06 Score=98.49 Aligned_cols=216 Identities=13% Similarity=0.086 Sum_probs=149.0
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhc-------CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch-
Q 007670 10 NGLLNKLSDRDTYSQAAKELDSIAATV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI- 80 (594)
Q Consensus 10 l~~L~KLsDrDT~r~A~~eLD~LA~~L-------ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL- 80 (594)
+..|..=.|.+.++.|+..|..|+..- ....++.|+.+|. ++++.+|++++.+|+.|+... .....+
T Consensus 198 v~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~----~~~~~v~~~A~~aL~nLa~~~~~~~~~v~ 273 (780)
T 2z6g_A 198 VRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLG----SPVDSVLFHAITTLHNLLLHQEGAKMAVR 273 (780)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhCCChhhHHHHH
Confidence 334433236678888888888876531 1222666666664 456789999999999998775 222222
Q ss_pred -HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670 81 -TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 81 -pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
..+++.+++.|++++..|+..++.+|..|+..-.+. .+. ..+.+|+..|-.......+..++.+|..+... ..
T Consensus 274 ~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~ 351 (780)
T 2z6g_A 274 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SS 351 (780)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--TT
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC--hH
Confidence 357888899999988899999988888777422111 111 16777888774444555666777777777642 22
Q ss_pred cchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 156 DAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 156 i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
..+.+ ...++.|+.+|.+.+...+..++.+++.++...... .....+++.|...|.+++|.+|..|+-+|+.|+..
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 22222 126788999998888777777888888887544332 33578999999999999999999999999999763
No 56
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.51 E-value=4.7e-06 Score=87.76 Aligned_cols=208 Identities=14% Similarity=0.088 Sum_probs=145.4
Q ss_pred ChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHHHHHH
Q 007670 18 DRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKIINSI 87 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~------L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkIL~~I 87 (594)
|.+.++.|+..|..|+.. + ....+|.|+..|. ++++.+|..++.+|+.++... .....+ ...+|.+
T Consensus 73 ~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L 148 (529)
T 1jdh_A 73 DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTT----CSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHH
Confidence 666788888888877643 1 1222667666664 456788999999999987764 222222 4578888
Q ss_pred HhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH--
Q 007670 88 TRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-- 161 (594)
Q Consensus 88 vrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-- 161 (594)
++.|++++..||.+++.+|+.|+..-.+. .+. ..+++|+..|........+..++.+|..+... +.....+-
T Consensus 149 ~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~ 226 (529)
T 1jdh_A 149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SSNKPAIVEA 226 (529)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--TTHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC--cccHHHHHHC
Confidence 88889888889988888888877532111 111 15777777775444566666777777777642 22223332
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 162 RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 162 ~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
..++.|.++|++++..++..++.+++.++...... .....+++.|...|.+++..+|..|+-+|+.|+..
T Consensus 227 g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 227 GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 37788999999888888888888888887554322 33468899999999999999999999999999763
No 57
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.51 E-value=3.9e-06 Score=92.72 Aligned_cols=216 Identities=14% Similarity=0.087 Sum_probs=152.2
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhh------c-CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch-
Q 007670 10 NGLLNKLSDRDTYSQAAKELDSIAAT------V-DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI- 80 (594)
Q Consensus 10 l~~L~KLsDrDT~r~A~~eLD~LA~~------L-ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL- 80 (594)
+..|..=.|.+.++.|+..|..|+.. + ....++.|+.+|. ++++.+|+.++.+|+.++... .....+
T Consensus 62 v~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~----~~~~~v~~~A~~aL~nL~~~~~~~~~~v~ 137 (644)
T 2z6h_A 62 VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVR 137 (644)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTT----CSSHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHh----CCCHHHHHHHHHHHHHHHhCcchhHHHHH
Confidence 33343323667888888888877653 1 2222777776664 456789999999999998764 111111
Q ss_pred -HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC
Q 007670 81 -TKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 81 -pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
..+++.+++.|++++..++.+++.+|+.|+..-.+. .+. ..+++|+..|.......++..++.+|..+..+ ..
T Consensus 138 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~--~~ 215 (644)
T 2z6h_A 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC--SS 215 (644)
T ss_dssp HTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC--TT
T ss_pred HCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC--cc
Confidence 457888899999999999999999998888532111 111 16778888775444566777788888777642 22
Q ss_pred cchhHHH--HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 156 DAGKLGR--MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 156 i~~yL~~--L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
...++-. .++.|+++|++.+..++..++.+++.++...... .....+++.|...|.++++.+|..|+-+|+.|+..
T Consensus 216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC-CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh-hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 2333322 6888999999988888888888998887554322 34568899999999999999999999999999763
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.49 E-value=1.9e-06 Score=95.65 Aligned_cols=222 Identities=15% Similarity=0.202 Sum_probs=135.1
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcC---
Q 007670 18 DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRD--- 93 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD--- 93 (594)
+.--.+.|+-.|-.|... .|+.++.|++.|.+...+.++.++-+|+.+|+.++... -...++.+++|.+++.|++
T Consensus 155 ~~~VRk~A~~al~~l~~~-~p~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~ 233 (618)
T 1w63_A 155 NSYLRKKAALCAVHVIRK-VPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIM 233 (618)
T ss_dssp CHHHHHHHHHHHHHHHHH-CGGGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHc
Confidence 333678888888888874 56678889999999998899999999999999997644 1123344455555555443
Q ss_pred ------------CChhHHHHHHHHHHhhchhhhcc--hhH---------------------------------------H
Q 007670 94 ------------KNSALQATCISTVSSLSPRVGAS--AFV---------------------------------------T 120 (594)
Q Consensus 94 ------------~Ds~VR~Ac~~ALG~LAe~l~~~--~~~---------------------------------------~ 120 (594)
+++-++-..++.++.++..-.+. .+. .
T Consensus 234 ~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~ 313 (618)
T 1w63_A 234 SGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVL 313 (618)
T ss_dssp SCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 46667777778887776542100 000 0
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL 200 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf 200 (594)
.+.+|...| .+.+++++-.|..+|..++..-+. .+......++.+|++++.-+|..++.++..++.. .-+
T Consensus 314 a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p~----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-----~nv 383 (618)
T 1w63_A 314 AINILGRFL-LNNDKNIRYVALTSLLKTVQTDHN----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG-----NNI 383 (618)
T ss_dssp HHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHHH----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS-----SST
T ss_pred HHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCHH----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc-----ccH
Confidence 122222222 334455555555555555443221 1222334566667777766777777777665432 114
Q ss_pred HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHh
Q 007670 201 KGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFES 250 (594)
Q Consensus 201 ~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs 250 (594)
+.++..|.+|+.+.|-+.|..++.+|+.+|....+.+..|...+++.|+.
T Consensus 384 ~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~ 433 (618)
T 1w63_A 384 RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTT 433 (618)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHh
Confidence 56677777777777777777777777777775555555565555555553
No 59
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.48 E-value=9.7e-07 Score=93.00 Aligned_cols=184 Identities=9% Similarity=0.096 Sum_probs=123.3
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc--hh
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS--AF 118 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~--~~ 118 (594)
++.++..+ .+.++..|+.++.+|+.++....-......++|.+++.|+++++.||..++.+|+.|+..-.+. .+
T Consensus 229 ~~~L~~ll----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 304 (529)
T 1jdh_A 229 MQALGLHL----TDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304 (529)
T ss_dssp HHHHHTTT----TSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHH----hCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 55555555 4457789999999999998876112246789999999999999999999999999998864221 11
Q ss_pred H--HhHHHHHHHHcc-CCChhHHHHHHHHHHHHHhhcCCCc--chhH--HHHHHHHHHHhcCCc-hhhHHHHHHHHHHHH
Q 007670 119 V--TMLKLLSDALFT-EQDTNAQVGAALCLAATIDAAQDPD--AGKL--GRMEVRLERLLKSEV-FKAKAAGLVVVGSVI 190 (594)
Q Consensus 119 ~--~~lkPL~eaL~~-eq~k~vQ~~Aa~ALaavvE~l~~~i--~~yL--~~L~~RL~klL~s~~-fkaK~alL~aIGSiA 190 (594)
. ..+++|+..|.. ..++.++..|+.||..+....++.. ...+ ...++.|.++|.++. ..++..++.+|+-++
T Consensus 305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~ 384 (529)
T 1jdh_A 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384 (529)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHh
Confidence 1 167888888853 2347899999999999976433210 1111 124778999999886 477888888888877
Q ss_pred hcCcCcCCch-HHHHHHHHhhhcCCcHHHHHHHHHHHHH
Q 007670 191 GSGAVDGSGL-KGLVSCLLGFLSSQDWAARKAAAEALWR 228 (594)
Q Consensus 191 ~a~~~~~pyf-~~lm~~L~e~L~seDw~lRKaAaDaLg~ 228 (594)
.......... ..+++.|.+.|.+.++.+|+.|+-+|+-
T Consensus 385 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 385 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423 (529)
T ss_dssp TSGGGHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred cChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCc
Confidence 4221111111 2468888888888899999988776664
No 60
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.46 E-value=1.4e-06 Score=100.64 Aligned_cols=212 Identities=16% Similarity=0.165 Sum_probs=152.9
Q ss_pred CChhHHHHHHHHHHHHHhhcCCC----------ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccch--HHH
Q 007670 17 SDRDTYSQAAKELDSIAATVDPT----------LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYI--TKI 83 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lppe----------~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphL--pkI 83 (594)
++....+.|+..|-.|+.+-+|+ .+|+|+.+|.. ..+...+.+++.+|+.|+... -....+ ...
T Consensus 548 ~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~---~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~ 624 (810)
T 3now_A 548 GTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQ---DCTALENFESLMALTNLASMNESVRQRIIKEQG 624 (810)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTST---TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCC---CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 56678899999999988765432 26777777642 223455679999999998653 111111 135
Q ss_pred HHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchh
Q 007670 84 INSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGK 159 (594)
Q Consensus 84 L~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~y 159 (594)
|+.++..|.+++..||.+|+++|+.|+..-.... +. ..+++|+..| +..+..+|..||.||+.+..+.+..+...
T Consensus 625 l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL-~s~d~~vq~~Aa~ALanLt~~s~~~~~~i 703 (810)
T 3now_A 625 VSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLC-EDEDEETATACAGALAIITSVSVKCCEKI 703 (810)
T ss_dssp HHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 7788888889999999999999999986432111 11 1567777666 77889999999999999988533222223
Q ss_pred H--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCC---cHHHHHHHHHHHHHHHHH
Q 007670 160 L--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQ---DWAARKAAAEALWRLAVV 232 (594)
Q Consensus 160 L--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~se---Dw~lRKaAaDaLg~IA~a 232 (594)
+ ...++.|+.+|.++++++|..++.+|+-++..+++...++ ...++.|...|... +..++..|.++|..|...
T Consensus 704 i~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 704 LAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 3 2478899999999999999999999998887544321111 13688888888654 799999999999998764
No 61
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.46 E-value=1.5e-06 Score=100.27 Aligned_cols=220 Identities=10% Similarity=0.070 Sum_probs=153.2
Q ss_pred HHHHHhhcCCChhHHHHHHHHHHHHHhhcCCC---------------------------------------C-hHHHHHh
Q 007670 8 SVNGLLNKLSDRDTYSQAAKELDSIAATVDPT---------------------------------------L-LPTFLSC 47 (594)
Q Consensus 8 rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe---------------------------------------~-lp~fLs~ 47 (594)
++++.|. -.|...+.-|+..|-.|+..-+.. . +|+|+.+
T Consensus 425 ~LV~LL~-s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~L 503 (810)
T 3now_A 425 ALMDLAR-GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCAL 503 (810)
T ss_dssp HHHHHHH-TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3444443 256667788888888888743211 2 6666666
Q ss_pred hhhcCCCCCCcchHHHHHHHHHHHhhhccccch--HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc-chh-----H
Q 007670 48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAF-----V 119 (594)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL--pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~-~~~-----~ 119 (594)
+. ++++.+|++++.+|+.+|...-....+ .-.+|.+++.|++.+..+|..|++||+.|+..... ..+ .
T Consensus 504 L~----s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~ 579 (810)
T 3now_A 504 AK----TESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSL 579 (810)
T ss_dssp HT----CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHH
T ss_pred Hc----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhh
Confidence 64 577899999999999998543111111 13577888888999999999999999999865421 111 1
Q ss_pred HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH-HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCC
Q 007670 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG-RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGS 198 (594)
Q Consensus 120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~-~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~p 198 (594)
..++||+..|..+.+...+.-|+.||..+....++.....+. ..+++|..+|.+++..++.+++.+|+-++........
T Consensus 580 ~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~ 659 (810)
T 3now_A 580 DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659 (810)
T ss_dssp HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHH
T ss_pred cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHH
Confidence 278999987742324344557889998888753211111121 2578999999999999999999999998753221112
Q ss_pred ch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 007670 199 GL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 199 yf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a 232 (594)
+. ...++.|..+|.+++-.+|++|+-+|+.|+..
T Consensus 660 ~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~ 695 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSV 695 (810)
T ss_dssp HHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Confidence 22 24789999999999999999999999999973
No 62
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.39 E-value=1.6e-07 Score=83.24 Aligned_cols=120 Identities=12% Similarity=0.142 Sum_probs=86.0
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
-++.+..|...+.++++.+|..++.+||.+... . ++.+++.|+|+|+.||.+++++||.+...-
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-----~----~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~------- 73 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-----A----FEPLLESLSNEDWRIRGAAAWIIGNFQDER------- 73 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSST-----T----HHHHHHGGGCSCHHHHHHHHHHHGGGCSHH-------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-----H----HHHHHHHHcCCCHHHHHHHHHHHHhcCCHH-------
Confidence 344455555556678899999999998865321 1 478889999999999999999999998533
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVG 187 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIG 187 (594)
.+.+|...| .+.++.|...|+.+|..+.+ +..++.|.++|++++..++..++.+++
T Consensus 74 a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 74 AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 678888888 67899999999999988742 345566777777777777777776665
No 63
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.37 E-value=8e-08 Score=85.16 Aligned_cols=124 Identities=15% Similarity=0.094 Sum_probs=90.2
Q ss_pred cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (594)
Q Consensus 78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~ 157 (594)
.+.+.-++.++..|+|+++.||.+++++||.+.... +.+|+..| .+.++.++..|+.+|..+.+
T Consensus 8 ~~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~--------~~~L~~~L-~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 8 HHHSSGLVPRGSHMADENKWVRRDVSTALSRMGDEA--------FEPLLESL-SNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp -------------CCSSCCCSSSSCCSSTTSCSSTT--------HHHHHHGG-GCSCHHHHHHHHHHHGGGCS-------
T ss_pred ccccccHHHHHHHhcCCCHHHHHHHHHHHHHhCchH--------HHHHHHHH-cCCCHHHHHHHHHHHHhcCC-------
Confidence 345666788899999999999999999999886532 36677766 68899999999998877542
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (594)
Q Consensus 158 ~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~I 229 (594)
+..++.|.++|++++..++..++.++|.+. -+..++.|.+.|.++|+.+|.+|+.+|+.|
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 234667778888889999999888888652 146788999999999999999999998754
No 64
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.35 E-value=1.4e-05 Score=93.86 Aligned_cols=201 Identities=13% Similarity=0.200 Sum_probs=159.8
Q ss_pred CcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcc----hhHH-hHHHHHHH
Q 007670 57 PGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGAS----AFVT-MLKLLSDA 128 (594)
Q Consensus 57 p~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~----~~~~-~lkPL~ea 128 (594)
...|+++...++.+..+. ...+ .+++..+.+.++|--+. ..++.+++.||+..... |... +++.++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 103 (986)
T 2iw3_A 28 ADNRHEIASEVASFLNGNIIEHDVP--EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTN 103 (986)
T ss_dssp TTTHHHHHHHHHHHHTSSCSSSSCC--HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 567788877777775543 3333 38999999999997666 99999999999877532 2222 55666666
Q ss_pred HccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHhcCcC-cCCchHHHHHH
Q 007670 129 LFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-VFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSC 206 (594)
Q Consensus 129 L~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~ 206 (594)
+ +++++.|+.+|-.|+++++.+++. ..+..++|.|+..|.+. ..+.|.++|.+|+.++..+.+ ..-+++.++|.
T Consensus 104 ~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~ 179 (986)
T 2iw3_A 104 A-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPV 179 (986)
T ss_dssp T-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred h-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcc
Confidence 6 789999999999999999999875 34577888999988766 689999999999999965544 34789999999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHHcC-CccchhhhHHHHHHHhcchhH---HHHHHhhcCCCC
Q 007670 207 LLGFLSSQDWAARKAAAEALWRLAVVEK-DAVPEFKGKCLKIFESKRFDK---MIEAWKQVPDLS 267 (594)
Q Consensus 207 L~e~L~seDw~lRKaAaDaLg~IA~a~g-d~f~py~~~~m~sLEs~RfDK---~i~lWk~i~~v~ 267 (594)
+.+++.+.--++.++|.++|-.+...++ ..+.||...+++++.+. ++ +++.-.+.-.|.
T Consensus 180 ~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p--~~~~~~~~~l~~~tfv~ 242 (986)
T 2iw3_A 180 LSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP--TEVPETVHLLGATTFVA 242 (986)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT--THHHHHHHHHTTCCCCS
T ss_pred hHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh--hhhHHHHHHhhcCeeEe
Confidence 9999999999999999999999999887 68888888888887765 44 666666666664
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.33 E-value=3.1e-06 Score=94.46 Aligned_cols=215 Identities=16% Similarity=0.140 Sum_probs=132.3
Q ss_pred HHHhhcCCCChHHHHHhhhhcC--CCCCCcchHHHHHHHHHHHhhh-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHH
Q 007670 31 SIAATVDPTLLPTFLSCILSTN--SSDKPGVRKECIHVIATLSNSH-NLSPYITKIINSITRNFRDKNSALQATCISTVS 107 (594)
Q Consensus 31 ~LA~~Lppe~lp~fLs~L~e~~--ss~kp~~RKaaI~lLGvlae~h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG 107 (594)
.|+.--.|+-++.++..|.... .+.+|++||.|+.++.-+...+ -+.++ +.+++.+.+.|.|+|+.|..+|+.++.
T Consensus 134 ~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~ 212 (621)
T 2vgl_A 134 CIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM-GDWTSRVVHLLNDQHLGVVTAATSLIT 212 (621)
T ss_dssp HHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC-CSCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc-hhHHHHHHHHhCCCCccHHHHHHHHHH
Confidence 3333334544666666666666 7788999999999999998866 33332 466777788889999999999998888
Q ss_pred hhchhhhcchhHHhHHHHHHHH---cc--CC-----------ChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Q 007670 108 SLSPRVGASAFVTMLKLLSDAL---FT--EQ-----------DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL 171 (594)
Q Consensus 108 ~LAe~l~~~~~~~~lkPL~eaL---~~--eq-----------~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL 171 (594)
.++..-.+ .+..+++.++..| +. +- ++-.|....-.|..+...-+......+..++++++..+
T Consensus 213 ~i~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~ 291 (621)
T 2vgl_A 213 TLAQKNPE-EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKA 291 (621)
T ss_dssp HHHHHCHH-HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChH-HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 88765421 1111222222222 11 11 56677655555544432101111234444555555433
Q ss_pred -cCC---chh----hHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--Cccchhh
Q 007670 172 -KSE---VFK----AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFK 241 (594)
Q Consensus 172 -~s~---~fk----aK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g--d~f~py~ 241 (594)
+.+ ..+ ..+.+++|+..+.... ...++...++..|..||.+.|-.+|-.|+++|..|+...+ +.|.+|.
T Consensus 292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~ 370 (621)
T 2vgl_A 292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHI 370 (621)
T ss_dssp HSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTH
T ss_pred ccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 122 111 2345777887777654 2346677889999999998999999999999999987654 4555555
Q ss_pred hHHHHHH
Q 007670 242 GKCLKIF 248 (594)
Q Consensus 242 ~~~m~sL 248 (594)
..++..|
T Consensus 371 ~~i~~~L 377 (621)
T 2vgl_A 371 ETVINAL 377 (621)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5444444
No 66
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.33 E-value=3.4e-06 Score=96.21 Aligned_cols=175 Identities=11% Similarity=0.071 Sum_probs=131.5
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch----hHHhHHHHH
Q 007670 51 TNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA----FVTMLKLLS 126 (594)
Q Consensus 51 ~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~----~~~~lkPL~ 126 (594)
.+.++....|++++.++..+.+..+ ....||.+++.|+++|+.||..|+.+|+.|+..-.... ...++.+|+
T Consensus 123 ~L~~~~~~~r~~a~~~l~~~~~~~i----~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv 198 (780)
T 2z6g_A 123 RLAEPSQMLKHAVVNLINYQDDAEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 198 (780)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHH
T ss_pred HhcCccHHHHHHHHHHHHhhhHHHH----HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHH
Confidence 3445677889999998886643322 26678888888899999999999999999998653111 113788899
Q ss_pred HHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-Cch-HH
Q 007670 127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-SGL-KG 202 (594)
Q Consensus 127 eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~--~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-pyf-~~ 202 (594)
..|..+.+..++..|+.+|..+..... ....+. ..++.|+++|++++..++..++.+++.++....... .+. ..
T Consensus 199 ~~L~~~~d~~vr~~Aa~aL~~Ls~~~~--~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g 276 (780)
T 2z6g_A 199 RTMQNTNDVETARCTSGTLHNLSHHRE--GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG 276 (780)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT
T ss_pred HHHcCCCCHHHHHHHHHHHHHHhCCch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC
Confidence 988555689999999999999765421 111222 378899999999998999999999999886543332 221 35
Q ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 203 LVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 203 lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
+++.|.+.|.++++.+|..|+++|..++.
T Consensus 277 ~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 277 GLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 78999999999999999999999998875
No 67
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.31 E-value=4.3e-06 Score=98.29 Aligned_cols=216 Identities=15% Similarity=0.160 Sum_probs=163.5
Q ss_pred HHhhcCCChh--HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh--ccccchHHHHH
Q 007670 11 GLLNKLSDRD--TYSQAAKELDSIAATVDPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLSPYITKIIN 85 (594)
Q Consensus 11 ~~L~KLsDrD--T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h--~isphLpkIL~ 85 (594)
.+|..++|.+ -...|...++.|+..++|+.+..+|+.|.+++. +.||..+-+++.+|+.+++.+ .+.-.||.|+|
T Consensus 99 ~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p 178 (986)
T 2iw3_A 99 AICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIP 178 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhc
Confidence 4566678866 566677799999999999987777887777754 348999999999999999887 88899999999
Q ss_pred HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhc--CCCcchhHHHH
Q 007670 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAA--QDPDAGKLGRM 163 (594)
Q Consensus 86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l--~~~i~~yL~~L 163 (594)
.+....-|.-+-|..|+..|+..+|.-+...-..-|++-|+++|. +++. |+ -|+.++-... -+...|-|.-|
T Consensus 179 ~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~-~p~~-~~----~~~~~l~~~tfv~~v~~~~l~~~ 252 (986)
T 2iw3_A 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIA-DPTE-VP----ETVHLLGATTFVAEVTPATLSIM 252 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHH-CTTH-HH----HHHHHHTTCCCCSCCCHHHHHHH
T ss_pred chHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhc-Chhh-hH----HHHHHhhcCeeEeeecchhHHHH
Confidence 999999999999999999999999987743222238899999994 4443 33 3444444432 23335788899
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC---cCCchHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHH
Q 007670 164 EVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV---DGSGLKGLVSCLLGFLS-SQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 164 ~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~---~~pyf~~lm~~L~e~L~-seDw~lRKaAaDaLg~IA~a 232 (594)
.|-|.+-|+......|....-.|.-+..--.+ .-||++.++|.|..... -.|=++|..|..|+.+|-.+
T Consensus 253 ~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 253 VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99999999887666666655566665533222 24888888999887654 46888888887777777554
No 68
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.28 E-value=3.6e-05 Score=75.19 Aligned_cols=187 Identities=16% Similarity=0.227 Sum_probs=143.3
Q ss_pred HHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH
Q 007670 43 TFLSCILSTNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT 120 (594)
Q Consensus 43 ~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~ 120 (594)
.||..+..+...+-|.++|-++..+-++++.+ .+.|.+.|++..+-+ +----.-++...++|++|..- +..+.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~k---sEaIpltqeIa~a~G~la~i~--Pe~v~ 106 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKK---SEAIPLTQEIAKAFGQMAKEK--PELVK 106 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH---CCSHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh---cccCchHHHHHHHHhHHHHhC--HHHHH
Confidence 46777777788888999999999999999999 888999998876654 233346688899999999765 22222
Q ss_pred -hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC-C
Q 007670 121 -MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG-S 198 (594)
Q Consensus 121 -~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~-p 198 (594)
+++-||+.. .--++.+.++.+|+|..+.-+-+ ..++.+..-++-+|.+++-.-|-++|..|+++ |+.+ -
T Consensus 107 ~vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~al----Gen~~~ 177 (253)
T 2db0_A 107 SMIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAM----GENSFK 177 (253)
T ss_dssp HHHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC----CTTTHH
T ss_pred hhHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH----hccCcc
Confidence 444444444 23388899999999998876532 46777888899999999988899999888842 4443 6
Q ss_pred chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHH
Q 007670 199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKC 244 (594)
Q Consensus 199 yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~ 244 (594)
|..+.+|.|...|.+.|--+|..|.|+|+-+|+.- +.|++-..+.
T Consensus 178 yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~~k 222 (253)
T 2db0_A 178 YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVIKR 222 (253)
T ss_dssp HHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHHHH
T ss_pred ccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHHHH
Confidence 77777899999999999999999999999999843 3355544333
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.25 E-value=5.5e-06 Score=92.50 Aligned_cols=172 Identities=18% Similarity=0.201 Sum_probs=130.6
Q ss_pred cCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc
Q 007670 51 TNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF 130 (594)
Q Consensus 51 ~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~ 130 (594)
..++++...||-+++.+..+++++ ...+--+++.+.+-|+|+++.||..|+.+||.+...- -...+++++...|.
T Consensus 82 l~~s~~~~~Krl~YL~l~~~~~~~--~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---~~~~l~~~v~~~l~ 156 (621)
T 2vgl_A 82 LLSSNRYTEKQIGYLFISVLVNSN--SELIRLINNAIKNDLASRNPTFMGLALHCIANVGSRE---MAEAFAGEIPKILV 156 (621)
T ss_dssp GGGCSCHHHHHHHHHHHHHSCCCC--HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---HHHHHTTHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHHh
Confidence 455788899999999999998776 1123556789999999999999999999999986522 11126666666663
Q ss_pred -cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHH
Q 007670 131 -TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLL 208 (594)
Q Consensus 131 -~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~ 208 (594)
++.++.|...|++|+.++.+..++. .++ +.++++|.++|+.++..++.+++.++..++..... +.++++.+++.|.
T Consensus 157 ~~d~~~~VRK~A~~al~kl~~~~p~~-~~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~ 234 (621)
T 2vgl_A 157 AGDTMDSVKQSAALCLLRLYRTSPDL-VPM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLS 234 (621)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHCGGG-CCC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhChhh-cCc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 5789999999999999999954432 232 46788999999988999999999999998865533 5688888888888
Q ss_pred hhhcC--------------CcHHHHHHHHHHHHHHH
Q 007670 209 GFLSS--------------QDWAARKAAAEALWRLA 230 (594)
Q Consensus 209 e~L~s--------------eDw~lRKaAaDaLg~IA 230 (594)
.++.. ++| ++-..++.|+.++
T Consensus 235 ~ll~~~~~~~~~~~~~~~~~~w-~qi~il~ll~~~~ 269 (621)
T 2vgl_A 235 RIVTSASTDLQDYTYYFVPAPW-LSVKLLRLLQCYP 269 (621)
T ss_dssp HHHHCCSSSCSTTEETTEESHH-HHHHHHHHGGGSS
T ss_pred HHHhCCCCCccchhhcCCCCch-HHHHHHHHHHHhC
Confidence 77653 346 4555666666554
No 70
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.22 E-value=1.2e-05 Score=88.87 Aligned_cols=187 Identities=12% Similarity=0.048 Sum_probs=135.3
Q ss_pred ChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-cccc--chHHHHHHHHhhhcCC-ChhHHHHHHHHHHhhchhhhc
Q 007670 40 LLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSP--YITKIINSITRNFRDK-NSALQATCISTVSSLSPRVGA 115 (594)
Q Consensus 40 ~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isp--hLpkIL~~IvrrLkD~-Ds~VR~Ac~~ALG~LAe~l~~ 115 (594)
.++.|+..|. ++++.+|..|+.+|+.++... .... ..+.+++.+++.|++. ++.||..|+.+|..|+..-..
T Consensus 15 ~i~~Lv~lL~----~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 15 AIPELTKLLN----DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp THHHHHHHHT----CSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHHHHHHHHc----CCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3888888776 467899999999999998766 1111 2357889999999865 889999999999998876421
Q ss_pred ch-hH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHh
Q 007670 116 SA-FV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 116 ~~-~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~ 191 (594)
.. +. ..+++|+..| ...++.+|..|+.+|..+....+.....+. ...++.|+++|++++.+.+.+++.+++.++.
T Consensus 91 ~~~i~~~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHTTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh
Confidence 01 11 1778888877 667899999999999999886433222222 3488999999999988888888888988885
Q ss_pred cCcCcC--CchHHHHHHHHhhhcCC-cHHHHHHHHHHHHHHHH
Q 007670 192 SGAVDG--SGLKGLVSCLLGFLSSQ-DWAARKAAAEALWRLAV 231 (594)
Q Consensus 192 a~~~~~--pyf~~lm~~L~e~L~se-Dw~lRKaAaDaLg~IA~ 231 (594)
...+.. -.-...++.|..+|.+. ...++..|+.+|..++.
T Consensus 170 ~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~ 212 (644)
T 2z6h_A 170 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 212 (644)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred cCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc
Confidence 322211 01113567777777654 46777888888888764
No 71
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.21 E-value=9.7e-06 Score=84.86 Aligned_cols=219 Identities=16% Similarity=0.115 Sum_probs=145.1
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-------CCCCCCcchHHHHHHHHHHHhhh-c
Q 007670 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-N 75 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~-------~ss~kp~~RKaaI~lLGvlae~h-~ 75 (594)
+.+...+.+|.+|+-++..|-++-++ ..+++++..|... ..+..+..|+++..+|..||.+. -
T Consensus 47 ~~~~~A~~aL~nls~d~e~R~~i~~~---------G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~ 117 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFDEEHRHAMNEL---------GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117 (354)
T ss_dssp GTHHHHHHHHHHHHTSHHHHHHHHHT---------THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHc---------CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 44455566666665334444443322 2277777777311 12234678999999999998665 1
Q ss_pred cccc---hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh---hcchhH--HhHHHHHHHHccCCChhHHHHHHHHHHH
Q 007670 76 LSPY---ITKIINSITRNFRDKNSALQATCISTVSSLSPRV---GASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAA 147 (594)
Q Consensus 76 isph---LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l---~~~~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaa 147 (594)
.... ..-++|.+++.|+.++..|+..++.+|+.|+..- .+.... -.++||+..|....+..++..|+.||-.
T Consensus 118 ~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~n 197 (354)
T 3nmw_A 118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 197 (354)
T ss_dssp HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2122 3457999999999999999999999999998741 111222 1799999987666678899888888888
Q ss_pred HHhhcCCCcchhH--HHHHHHHHHHhcCCch----hhHHHHHHHHHHHHh---cCcCcCCch--HHHHHHHHhhhcCCcH
Q 007670 148 TIDAAQDPDAGKL--GRMEVRLERLLKSEVF----KAKAAGLVVVGSVIG---SGAVDGSGL--KGLVSCLLGFLSSQDW 216 (594)
Q Consensus 148 vvE~l~~~i~~yL--~~L~~RL~klL~s~~f----kaK~alL~aIGSiA~---a~~~~~pyf--~~lm~~L~e~L~seDw 216 (594)
+.-..++.-.... .-.++.|+++|.+++. .++..+..+|..++. ...+....+ ...++.|.+.|.+.+.
T Consensus 198 Ls~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 198 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 7652211111222 3477889999987643 366666677777664 222211111 2368999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 007670 217 AARKAAAEALWRLAV 231 (594)
Q Consensus 217 ~lRKaAaDaLg~IA~ 231 (594)
.+++.|+-+|+.|+.
T Consensus 278 ~v~~~A~~aL~nLa~ 292 (354)
T 3nmw_A 278 TIVSNACGTLWNLSA 292 (354)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999974
No 72
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=98.20 E-value=9e-05 Score=75.35 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=135.6
Q ss_pred CCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch------h-HHhHHHHH
Q 007670 56 KPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA------F-VTMLKLLS 126 (594)
Q Consensus 56 kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~------~-~~~lkPL~ 126 (594)
++-.|-+++-.|--..+.. .+...+.-++..+.=|+.|.+..|-..|++.|..+.+.+.+.. + ..+++.|+
T Consensus 59 d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~Lv 138 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLL 138 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 5555555555554444433 5556777788888889999999999999999999988886531 1 24888889
Q ss_pred HHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHH--
Q 007670 127 DALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLV-- 204 (594)
Q Consensus 127 eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm-- 204 (594)
+-| |+++..+-..+-.+|..+.+..+ ..++.+++...+++.+.++|...+..|++++.--|.. ....+
T Consensus 139 eKl-Gd~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~ 208 (266)
T 2of3_A 139 LKT-GEAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSV 208 (266)
T ss_dssp HGG-GCSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCH
T ss_pred HHh-CCChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccc
Confidence 999 88888887777777766665321 3447788888999999999999999999999554443 23456
Q ss_pred -HHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhh
Q 007670 205 -SCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFK 241 (594)
Q Consensus 205 -~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~ 241 (594)
+.+..+|.+.|-.+|.+|+.||..+=..+|+.+.-|.
T Consensus 209 ~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~l 246 (266)
T 2of3_A 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246 (266)
T ss_dssp HHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8899999999999999999999999988998666564
No 73
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.18 E-value=1.6e-05 Score=86.13 Aligned_cols=191 Identities=14% Similarity=0.122 Sum_probs=132.7
Q ss_pred hHHHHHhhhhc-------CCCCCCcchHHHHHHHHHHHhhh-ccccc---hHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670 41 LPTFLSCILST-------NSSDKPGVRKECIHVIATLSNSH-NLSPY---ITKIINSITRNFRDKNSALQATCISTVSSL 109 (594)
Q Consensus 41 lp~fLs~L~e~-------~ss~kp~~RKaaI~lLGvlae~h-~isph---LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L 109 (594)
+++++..|... ..+.++..++++..+|..||.+. ..... ..-+||.+++.|+.++..|+..++++|+.|
T Consensus 191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL 270 (458)
T 3nmz_A 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL 270 (458)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 78888888421 11234668999999999998765 12122 355799999999999999999999999999
Q ss_pred chhh---hcchhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcCCch----hh
Q 007670 110 SPRV---GASAFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVF----KA 178 (594)
Q Consensus 110 Ae~l---~~~~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s~~f----ka 178 (594)
+..- .+.... -.++||++.|....+..++..|+.||-.+.-..++.-.... .-.++-|.++|.+..- .+
T Consensus 271 s~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v 350 (458)
T 3nmz_A 271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 350 (458)
T ss_dssp TSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHH
T ss_pred hcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHH
Confidence 8741 111122 17999999886666888999888888887652211111121 2367778888887643 35
Q ss_pred HHHHHHHHHHHHh---cCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 179 KAAGLVVVGSVIG---SGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 179 K~alL~aIGSiA~---a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
+..+..+|..++. ...+....+ ...++.|.+.|.+.+..+++.|+-+|+.|+.
T Consensus 351 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 351 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHc
Confidence 6666677777664 222221111 2368899999999999999999999999984
No 74
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.7e-05 Score=77.36 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=130.6
Q ss_pred hcCCChh--HHHHHHHHHHHHHhhcCCC----C----hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--------c
Q 007670 14 NKLSDRD--TYSQAAKELDSIAATVDPT----L----LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH--------N 75 (594)
Q Consensus 14 ~KLsDrD--T~r~A~~eLD~LA~~Lppe----~----lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h--------~ 75 (594)
.+|.+.. .+.-|+++|..+....+.+ . +..+...+.....+.+..+-..++.++..++..+ .
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 3454444 7788899998877765322 1 2222334445556678889999999999987754 3
Q ss_pred cccchHHHHHHHHhh-hcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCC
Q 007670 76 LSPYITKIINSITRN-FRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQD 154 (594)
Q Consensus 76 isphLpkIL~~Ivrr-LkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~ 154 (594)
..+++..++|.|+.+ |.|+...+|.++..++-.+++... +...++..++.+| ...++.++.+++.+|..+++..+.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~--~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT--SITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS--SSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCC
Confidence 445688899988865 899999999999999988876652 2223455555555 678999999999999999998654
Q ss_pred Cc---chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 155 PD---AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 155 ~i---~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
.. .+.++.+++-+.++|++.+..+|.+++.+++.+-..
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 43 346788999999999999999999999999988743
No 75
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.12 E-value=4.3e-05 Score=89.37 Aligned_cols=230 Identities=8% Similarity=0.018 Sum_probs=151.6
Q ss_pred cCCChhHHHHHHHHHHHHHhhc--CCCC---hHHHH----HhhhhcCC---CC-----CC--------------cchHHH
Q 007670 15 KLSDRDTYSQAAKELDSIAATV--DPTL---LPTFL----SCILSTNS---SD-----KP--------------GVRKEC 63 (594)
Q Consensus 15 KLsDrDT~r~A~~eLD~LA~~L--ppe~---lp~fL----s~L~e~~s---s~-----kp--------------~~RKaa 63 (594)
...|++....|++-+-.++..+ .+.. +.+++ ..+..... .. ++ ..||++
T Consensus 354 ~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~ 433 (1049)
T 3m1i_C 354 KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSE 433 (1049)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHH
Confidence 4567788888888888888754 2211 33333 33322111 00 11 225555
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc--C------C
Q 007670 64 IHVIATLSNSHNLSPYITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT--E------Q 133 (594)
Q Consensus 64 I~lLGvlae~h~isphLpkIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~--e------q 133 (594)
--+|-.++... -.+-++.+++.+.+.+.. ++-..|+|++.++|++++.+.+.....++..++..|.. + +
T Consensus 434 ~~~L~~l~~~~-~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~ 512 (1049)
T 3m1i_C 434 REVLVYLTHLN-VIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDN 512 (1049)
T ss_dssp HHHHHHHHHHC-HHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHH
T ss_pred HHHHHHHHccC-HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 55555555322 223455666666666653 55678999999999999887543222244444444431 1 2
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCc-Cc--------CCchHHHH
Q 007670 134 DTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGA-VD--------GSGLKGLV 204 (594)
Q Consensus 134 ~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~-~~--------~pyf~~lm 204 (594)
.+.++..+|.++.++.+-.... .+||+.+++.|+..|.+++.+++.++..++..++...+ .+ .||++.+|
T Consensus 513 ~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il 591 (1049)
T 3m1i_C 513 KAVVASDIMYVVGQYPRFLKAH-WNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTII 591 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHH
Confidence 3445556888888776654322 37999999999999999889999999999999885432 22 39999999
Q ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHHHHcC--CccchhhhHHHH
Q 007670 205 SCLLGFLSSQDWAARKAAAEALWRLAVVEK--DAVPEFKGKCLK 246 (594)
Q Consensus 205 ~~L~e~L~seDw~lRKaAaDaLg~IA~a~g--d~f~py~~~~m~ 246 (594)
..|...+..-+-..+....++++.|+.+.+ +...+|...+|.
T Consensus 592 ~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~ 635 (1049)
T 3m1i_C 592 RDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQ 635 (1049)
T ss_dssp HTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999998887665566788999999999887 467777777554
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.11 E-value=9.9e-06 Score=85.42 Aligned_cols=224 Identities=14% Similarity=0.083 Sum_probs=129.7
Q ss_pred HHHhhcC---CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHH
Q 007670 10 NGLLNKL---SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINS 86 (594)
Q Consensus 10 l~~L~KL---sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~ 86 (594)
.-...|| .|-.-.|+..-.|..++.. +.+.| ...+.|..-.+++++.+|--||+.|+-+... ..++.|.+.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m~~~l~~~ 143 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQITDS----TMLQAIERY 143 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TTHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HHHHHHHHH
Confidence 3334455 2444777888888888776 44446 7788887778899999999999999988554 357889999
Q ss_pred HHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-----------C
Q 007670 87 ITRNFRDKNSALQATCISTVSSLSPRVGASAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAA-----------Q 153 (594)
Q Consensus 87 IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l-----------~ 153 (594)
|.+.|.|.++-||.+|+.+...|.... |... |+.-+-+++ .+.++.||..|..+|..+.+.- .
T Consensus 144 lk~~L~d~~pyVRk~A~l~~~kL~~~~---pe~v~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~ 219 (355)
T 3tjz_B 144 MKQAIVDKVPSVSSSALVSSLHLLKCS---FDVVKRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219 (355)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTTTC---HHHHHTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHhccC---HHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence 999999999999999999988776555 3222 777777777 7788999977766666655421 1
Q ss_pred CC-c-chhH--------------------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhh
Q 007670 154 DP-D-AGKL--------------------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFL 211 (594)
Q Consensus 154 ~~-i-~~yL--------------------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L 211 (594)
.. + .|+. ..+++.|..+|++.+.. .+++|+..|..-.......+..++..|+-||
T Consensus 220 ~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~a---VvyEa~k~I~~l~~~~~~~~~~a~~~L~~fL 296 (355)
T 3tjz_B 220 RHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEM---VVYEAASAIVNLPGCSAKELAPAVSVLQLFC 296 (355)
T ss_dssp SSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHH---HHHHHHHHHTC-----------CCCTHHHHH
T ss_pred cCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChH---HHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 10 0 1111 11333333344443322 3555555554332211223444567778888
Q ss_pred cCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHH
Q 007670 212 SSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLK 246 (594)
Q Consensus 212 ~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~ 246 (594)
.+.|-.+|=+|++.|..|+...++.+.....++..
T Consensus 297 ss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~ 331 (355)
T 3tjz_B 297 SSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLEN 331 (355)
T ss_dssp HSSSSSSHHHHHHCC--------------------
T ss_pred cCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHH
Confidence 88888899999999999988877777665444433
No 77
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.02 E-value=4e-05 Score=80.23 Aligned_cols=208 Identities=15% Similarity=0.110 Sum_probs=143.0
Q ss_pred hHHHHHHHHHHHHHhhcC--------CCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh---h---ccccchHHHH
Q 007670 20 DTYSQAAKELDSIAATVD--------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---H---NLSPYITKII 84 (594)
Q Consensus 20 DT~r~A~~eLD~LA~~Lp--------pe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~---h---~isphLpkIL 84 (594)
+.++.|+..|-.|+..=+ ... ||+|+..|. ++++.++..+.-+|+.|+.+ . .+.. .-.+
T Consensus 99 ~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~--~G~I 172 (354)
T 3nmw_A 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSV 172 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH--TTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC----CCCHHHHHHHHHHHHHHhccCCHHHHHHHHH--CCCH
Confidence 356778888888775322 122 666666654 57788999999999999864 1 2211 1346
Q ss_pred HHHHhh-hcCCChhHHHHHHHHHHhhchhhhc--chhH---HhHHHHHHHHccCCCh---hHHHHHHHHHHHHHhhc--C
Q 007670 85 NSITRN-FRDKNSALQATCISTVSSLSPRVGA--SAFV---TMLKLLSDALFTEQDT---NAQVGAALCLAATIDAA--Q 153 (594)
Q Consensus 85 ~~Ivrr-LkD~Ds~VR~Ac~~ALG~LAe~l~~--~~~~---~~lkPL~eaL~~eq~k---~vQ~~Aa~ALaavvE~l--~ 153 (594)
|.+++. ++.++..++..++.+|+.|+.+..+ ..+. -.+++|...|....+. .++..|+.||..+.-.+ .
T Consensus 173 p~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~ 252 (354)
T 3nmw_A 173 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 252 (354)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC
Confidence 777776 4567888999999999999985432 1222 1788888888533222 47888888888876421 1
Q ss_pred CCcchhHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHH
Q 007670 154 DPDAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRL 229 (594)
Q Consensus 154 ~~i~~yL~--~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~I 229 (594)
+.....+. ..++.|+++|.+.++.++..++.+|+-++....+...++ ...+|.|.+.|.+.+-.+|+.|+.+|..|
T Consensus 253 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 253 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332 (354)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11122221 267899999999999999998889988763222222222 24689999999999999999999999999
Q ss_pred HHHc
Q 007670 230 AVVE 233 (594)
Q Consensus 230 A~a~ 233 (594)
+..-
T Consensus 333 ~~~~ 336 (354)
T 3nmw_A 333 MANR 336 (354)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 9853
No 78
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=97.94 E-value=4.8e-05 Score=91.02 Aligned_cols=208 Identities=13% Similarity=0.023 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHhhcCCCChHHHHHhh----hhcCC---------------------CCCCcchHHHHHHHHHHHhhh--
Q 007670 22 YSQAAKELDSIAATVDPTLLPTFLSCI----LSTNS---------------------SDKPGVRKECIHVIATLSNSH-- 74 (594)
Q Consensus 22 ~r~A~~eLD~LA~~Lppe~lp~fLs~L----~e~~s---------------------s~kp~~RKaaI~lLGvlae~h-- 74 (594)
++.....|+.++.-.|...+...+..| ..... ++.+....+.+..++.+.+++
T Consensus 440 Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~ 519 (1204)
T 3a6p_A 440 RAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFR 519 (1204)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556677777766655565444444 32111 122344566778888888887
Q ss_pred cc-ccchHH-HHHHHHhhh---cCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHc---cC------------CC
Q 007670 75 NL-SPYITK-IINSITRNF---RDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALF---TE------------QD 134 (594)
Q Consensus 75 ~i-sphLpk-IL~~IvrrL---kD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~---~e------------q~ 134 (594)
.. .++++. +++.++..| ...++.+|..+...+|.|++|+...| .+++|+++.|+ .+ .+
T Consensus 520 ~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p--~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~ 597 (1204)
T 3a6p_A 520 TLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRP--EFLPQVFSKLFSSVTFETVEESKAPRTRAV 597 (1204)
T ss_dssp HSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCG--GGHHHHHHHHHHHHHCCTTCSTTSCCCHHH
T ss_pred ccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCc--hHHHHHHHHHHHhhccCCcccccccccHHH
Confidence 23 467663 555555553 44688999999999999999997555 36666666665 22 35
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCc---hhhHHHHHHHHHHHHhc-CcC-c-CCchHHHHHHHH
Q 007670 135 TNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEV---FKAKAAGLVVVGSVIGS-GAV-D-GSGLKGLVSCLL 208 (594)
Q Consensus 135 k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~---fkaK~alL~aIGSiA~a-~~~-~-~pyf~~lm~~L~ 208 (594)
+.++..||+||.++++.+++...+|++.|...+..++.... -+-+..+..+|+.++.. +.. . ..|+..+|+-+.
T Consensus 598 k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~ 677 (1204)
T 3a6p_A 598 RNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVA 677 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999988889999999999999997554 45566788888888643 222 1 377899999999
Q ss_pred hhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670 209 GFLSSQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 209 e~L~seDw~lRKaAaDaLg~IA~a~g 234 (594)
..+.+++|+. +..+. ..++..+|
T Consensus 678 ~~w~~~~~~~--~~s~~-~~f~~~~G 700 (1204)
T 3a6p_A 678 SIWLSQDMHR--VLSDV-DAFIAYVG 700 (1204)
T ss_dssp HHHSCHHHHH--HHHCH-HHHHHHHT
T ss_pred HHHccHHHHH--hhcCH-HHHHHHhC
Confidence 9998888873 33333 44444444
No 79
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=97.93 E-value=8.5e-05 Score=80.54 Aligned_cols=207 Identities=15% Similarity=0.104 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhhcC--------CCC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh---h---ccccchHHHHH
Q 007670 21 TYSQAAKELDSIAATVD--------PTL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNS---H---NLSPYITKIIN 85 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lp--------pe~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~---h---~isphLpkIL~ 85 (594)
.++.|+..|-.|+..=+ ... ||+|+..|. ++++.++..+.-+|+.|+.+ . .+.. ...+|
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~--~GaI~ 289 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLRE--VGSVK 289 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG----CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh----CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH--cCCHH
Confidence 46778888888875432 112 556665554 57788999999999999764 1 2211 23577
Q ss_pred HHHhhh-cCCChhHHHHHHHHHHhhchhhhc-c-hhH---HhHHHHHHHHccCCCh---hHHHHHHHHHHHHHhh--cCC
Q 007670 86 SITRNF-RDKNSALQATCISTVSSLSPRVGA-S-AFV---TMLKLLSDALFTEQDT---NAQVGAALCLAATIDA--AQD 154 (594)
Q Consensus 86 ~IvrrL-kD~Ds~VR~Ac~~ALG~LAe~l~~-~-~~~---~~lkPL~eaL~~eq~k---~vQ~~Aa~ALaavvE~--l~~ 154 (594)
.+++.| +..+..++..++.+|+.|+.+..+ . .+. ..+++|...|....+. .++..|+.||..+.-. ..+
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 369 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 369 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH
Confidence 777764 556788999999999999985532 1 222 1788888888533222 4788888888887642 111
Q ss_pred CcchhHH--HHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCch--HHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 155 PDAGKLG--RMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGL--KGLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 155 ~i~~yL~--~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf--~~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
.....+. ..++.|+++|++.++.++..++.+|+-++....+...++ ...++.|.+.|.+.+..+|+.|+.+|..|+
T Consensus 370 ~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 370 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1122222 267899999999999999999999998874322222222 246899999999999999999999999998
Q ss_pred HHc
Q 007670 231 VVE 233 (594)
Q Consensus 231 ~a~ 233 (594)
..-
T Consensus 450 ~~~ 452 (458)
T 3nmz_A 450 ANR 452 (458)
T ss_dssp TCC
T ss_pred cCC
Confidence 753
No 80
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.86 E-value=0.00012 Score=78.16 Aligned_cols=137 Identities=15% Similarity=0.109 Sum_probs=91.9
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhcCC-------CC-hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccc
Q 007670 9 VNGLLNKLSDRDTYSQAAKELDSIAATVDP-------TL-LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPY 79 (594)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lpp-------e~-lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isph 79 (594)
++..|.. +|.+.+..|+..|..|+.+-++ .. ||+|+.+|. ++++..++++..+|..|+... -....
T Consensus 7 lv~~L~s-~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~----s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 7 AVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR----SPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHS-SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT----SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHCC-CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc----CCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3444433 5667888888888888754332 12 677777775 467789999999999998652 11111
Q ss_pred h--HHHHHHHHhhhc-CCChhHHHHHHHHHHhhchhhhcchh-H--HhHHHHHHHHc--------cC-------CChhHH
Q 007670 80 I--TKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASAF-V--TMLKLLSDALF--------TE-------QDTNAQ 138 (594)
Q Consensus 80 L--pkIL~~IvrrLk-D~Ds~VR~Ac~~ALG~LAe~l~~~~~-~--~~lkPL~eaL~--------~e-------q~k~vQ 138 (594)
+ .-.+|.+++.|+ .++..|+..++++|+.||.. .+... . ..++||+..|. +. .+..++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 1 134777888888 78899999999999999987 22211 1 37888888882 11 245566
Q ss_pred HHHHHHHHHHHhh
Q 007670 139 VGAALCLAATIDA 151 (594)
Q Consensus 139 ~~Aa~ALaavvE~ 151 (594)
..|+.||..+..+
T Consensus 161 ~~a~~aL~nLs~~ 173 (457)
T 1xm9_A 161 FNATGCLRNLSSA 173 (457)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHccC
Confidence 6777777776653
No 81
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.65 E-value=0.0012 Score=70.32 Aligned_cols=222 Identities=13% Similarity=0.113 Sum_probs=140.4
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHhhcCCC------C-hHHHHHhhhh------cCCC------CCCcchHHHHHHHHH
Q 007670 9 VNGLLNKLSDRDTYSQAAKELDSIAATVDPT------L-LPTFLSCILS------TNSS------DKPGVRKECIHVIAT 69 (594)
Q Consensus 9 vl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe------~-lp~fLs~L~e------~~ss------~kp~~RKaaI~lLGv 69 (594)
+++.|.+=+|.+....|+..|-.|+.+ +.- . +|+|+.+|.. ...+ .++.+.+.++.+|..
T Consensus 91 Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~n 169 (457)
T 1xm9_A 91 AVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRN 169 (457)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHH
Confidence 344554445778899999999999976 321 2 6788888832 0011 345566799999999
Q ss_pred HHhhh----ccc---cchHHHHHHHHhhh--cCCChhHHHHHHHHHHhhchhhh--------------------------
Q 007670 70 LSNSH----NLS---PYITKIINSITRNF--RDKNSALQATCISTVSSLSPRVG-------------------------- 114 (594)
Q Consensus 70 lae~h----~is---phLpkIL~~IvrrL--kD~Ds~VR~Ac~~ALG~LAe~l~-------------------------- 114 (594)
||... .+. .-++.++..+...+ .+++..+.+.|+.+|..|+..+.
T Consensus 170 Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (457)
T 1xm9_A 170 LSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGC 249 (457)
T ss_dssp HTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC------------
T ss_pred HccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccch
Confidence 97654 222 23444444443322 12555566666666776653210
Q ss_pred ------------------------cc--h--hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc---h-hH--
Q 007670 115 ------------------------AS--A--FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA---G-KL-- 160 (594)
Q Consensus 115 ------------------------~~--~--~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~---~-yL-- 160 (594)
++ . ....+++|+..|....++.++..||.||..++-+-..... . .+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~ 329 (457)
T 1xm9_A 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329 (457)
T ss_dssp ----------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTT
T ss_pred hhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHH
Confidence 00 0 0126788888886566789999999999999864332111 1 12
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcH------HHHHHHHHHHHHHHH
Q 007670 161 GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDW------AARKAAAEALWRLAV 231 (594)
Q Consensus 161 ~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw------~lRKaAaDaLg~IA~ 231 (594)
...+|.|+++|.++++++|..+..+|+-++.-...-...-...|+.|.+.|...+. .+-.+|+.+|+.|..
T Consensus 330 ~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~ 406 (457)
T 1xm9_A 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA 406 (457)
T ss_dssp SCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT
T ss_pred cCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 23568899999999999999999999988753211112224578999999987542 466678888887764
No 82
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.56 E-value=0.0024 Score=74.88 Aligned_cols=189 Identities=14% Similarity=0.117 Sum_probs=126.4
Q ss_pred hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhc-CCChhHHHHHHHHHHhhchhhhcchhH
Q 007670 41 LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFR-DKNSALQATCISTVSSLSPRVGASAFV 119 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLk-D~Ds~VR~Ac~~ALG~LAe~l~~~~~~ 119 (594)
+..+|..+.+. ++-.+||.+...||.+.-+-- ... +.+++.|. |.++.||.+++.++|+-..-... .
T Consensus 509 i~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~--e~~----~~li~~L~~~~dp~vRygaa~alglAyaGTGn---~ 576 (963)
T 4ady_A 509 IHDMFTYSQET---QHGNITRGLAVGLALINYGRQ--ELA----DDLITKMLASDESLLRYGGAFTIALAYAGTGN---N 576 (963)
T ss_dssp HHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCG--GGG----HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC---H
T ss_pred HHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCCh--HHH----HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC---H
Confidence 67777776653 234678888888887744430 112 22333332 67888888888888765544422 2
Q ss_pred HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHHhcCcCcCC
Q 007670 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLL-KSEVFKAKAAGLVVVGSVIGSGAVDGS 198 (594)
Q Consensus 120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL-~s~~fkaK~alL~aIGSiA~a~~~~~p 198 (594)
..+..|+..+..+.+..|+.+|+.+|+-+.=.-+ ..++|++.+| ++.+..+|-++.-|+|-+. +| .|
T Consensus 577 ~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~-aG---n~ 644 (963)
T 4ady_A 577 SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIAC-AG---KG 644 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHT-SS---SC
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-cC---CC
Confidence 2566666666667788899999999987632211 2355666644 4568888888888888533 33 13
Q ss_pred chHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchh
Q 007670 199 GLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFD 254 (594)
Q Consensus 199 yf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfD 254 (594)
. ..++..|..++.+.|..+|..|+-+||.|..--.+...|.+..+++.|...-.|
T Consensus 645 ~-~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 645 L-QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp C-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred c-HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 2 678888989999999999999999999997655567667777777666655444
No 83
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.56 E-value=0.0053 Score=72.19 Aligned_cols=224 Identities=13% Similarity=0.084 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHhhcC--CCChHHHHHhhhh--cCCCCCCcchHHHHHHHHHHHhhh--ccccchHHHHHHHHhhhcC-
Q 007670 21 TYSQAAKELDSIAATVD--PTLLPTFLSCILS--TNSSDKPGVRKECIHVIATLSNSH--NLSPYITKIINSITRNFRD- 93 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lp--pe~lp~fLs~L~e--~~ss~kp~~RKaaI~lLGvlae~h--~isphLpkIL~~IvrrLkD- 93 (594)
-+..++..|-+.+.-+. |+.+++.|..+.+ ...++++.+|.+|..+|..+|+.| .+.||++.|+..+...|.=
T Consensus 511 V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~ 590 (980)
T 3ibv_A 511 VQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNIS 590 (980)
T ss_dssp HHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCC
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCc
Confidence 45556666666666663 5559999999998 888888999999999999999999 7899999999998877651
Q ss_pred --C-------ChhH-----------HHHHHHHHHhhchhhhcch------hHHhHHHHHHHHc---cC-C---ChhHHH-
Q 007670 94 --K-------NSAL-----------QATCISTVSSLSPRVGASA------FVTMLKLLSDALF---TE-Q---DTNAQV- 139 (594)
Q Consensus 94 --~-------Ds~V-----------R~Ac~~ALG~LAe~l~~~~------~~~~lkPL~eaL~---~e-q---~k~vQ~- 139 (594)
| ++.+ +--..+|+|.|......++ ...++.||+..|- .. + +..+|+
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~ 670 (980)
T 3ibv_A 591 VSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVY 670 (980)
T ss_dssp CCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHH
T ss_pred CCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHH
Confidence 1 1111 2337889999987764221 2248999988874 11 1 211233
Q ss_pred HHHHHHHHHHhhcCCC------cchhHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHhcCcC-cCCchHHHHHHHHhh
Q 007670 140 GAALCLAATIDAAQDP------DAGKLGRMEVRLERLLK--SEVFKAKAAGLVVVGSVIGSGAV-DGSGLKGLVSCLLGF 210 (594)
Q Consensus 140 ~Aa~ALaavvE~l~~~------i~~yL~~L~~RL~klL~--s~~fkaK~alL~aIGSiA~a~~~-~~pyf~~lm~~L~e~ 210 (594)
...+||.++.-+..+. +.+.+...++-+...|+ ..+..++.++-.++.-++..-|. ..||++.++..|..-
T Consensus 671 ~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~ 750 (980)
T 3ibv_A 671 CSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNS 750 (980)
T ss_dssp HHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhc
Confidence 4456666666554322 34567788888877786 44667888888888877755444 579999999988865
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHH
Q 007670 211 LSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKI 247 (594)
Q Consensus 211 L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~s 247 (594)
....+.. -.+..++-|....|+.+.|+...++..
T Consensus 751 ~~~~e~~---~fL~l~~qli~~f~~~~~~~l~~ll~~ 784 (980)
T 3ibv_A 751 IDMNELV---DVLSFISQLIHIYKDNMMEITNRMLPT 784 (980)
T ss_dssp CCTTTHH---HHHHHHHHHHHHTTTTSHHHHHHHHHH
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555543 256667777777776577776666644
No 84
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.42 E-value=0.0065 Score=71.32 Aligned_cols=218 Identities=13% Similarity=0.112 Sum_probs=147.1
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-ccccchHH
Q 007670 4 ALKTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-NLSPYITK 82 (594)
Q Consensus 4 ~Lk~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-~isphLpk 82 (594)
+.-+.+++.+.+=.+.+..|.|+--|-.+... .++.++.++..|.. +.+|.+|..+++++|..+.|- .. .-+++
T Consensus 507 ~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~-~aIq~ 581 (963)
T 4ady_A 507 EAIHDMFTYSQETQHGNITRGLAVGLALINYG-RQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNN-SAVKR 581 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCH-HHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-ChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCH-HHHHH
Confidence 34455666554433445666655444433111 45559999999875 468899999999999876665 21 23444
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH
Q 007670 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (594)
Q Consensus 83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~ 162 (594)
||..+. .|++.-||++++.+||-++-.- + ..+..+++.|....++.+-.+|+.||.-+.-+-+. ++
T Consensus 582 LL~~~~---~d~~d~VRraAViaLGlI~~g~---~--e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~ 647 (963)
T 4ady_A 582 LLHVAV---SDSNDDVRRAAVIALGFVLLRD---Y--TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QS 647 (963)
T ss_dssp HHHHHH---HCSCHHHHHHHHHHHHHHTSSS---C--SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HH
T ss_pred HHHHhc---cCCcHHHHHHHHHHHHhhccCC---H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HH
Confidence 554444 5788889999999999865332 1 14566777776677999999999999887643332 45
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCc-CCchHHHHHHHHhhhcC--CcHHHHHHHHHHHHHHHHHcCC-ccc
Q 007670 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVD-GSGLKGLVSCLLGFLSS--QDWAARKAAAEALWRLAVVEKD-AVP 238 (594)
Q Consensus 163 L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~-~pyf~~lm~~L~e~L~s--eDw~lRKaAaDaLg~IA~a~gd-~f~ 238 (594)
++.-|.++++.++..++..++-++|-|..--... .|.+..++..|..+..+ +|-.+|-.|+-++|-|-.-.|- .+.
T Consensus 648 aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis 727 (963)
T 4ady_A 648 AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQ 727 (963)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEEC
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEE
Confidence 5556666677777777777666666443222233 38899999999999875 6888999999999988643332 566
Q ss_pred hh
Q 007670 239 EF 240 (594)
Q Consensus 239 py 240 (594)
||
T Consensus 728 ~~ 729 (963)
T 4ady_A 728 LE 729 (963)
T ss_dssp SB
T ss_pred ee
Confidence 65
No 85
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.38 E-value=0.0029 Score=70.77 Aligned_cols=214 Identities=12% Similarity=0.094 Sum_probs=139.4
Q ss_pred ChhHHHHHHHHHHHHHhhcC------CCChHHHHHhhh-hc-------------CCCCCCcchHHHHHHHHHHHhhh---
Q 007670 18 DRDTYSQAAKELDSIAATVD------PTLLPTFLSCIL-ST-------------NSSDKPGVRKECIHVIATLSNSH--- 74 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lp------pe~lp~fLs~L~-e~-------------~ss~kp~~RKaaI~lLGvlae~h--- 74 (594)
|.+.++.|+..|-.|+.+=. ...+|+|+..|. ++ ....++.+++.+.-+|..|+...
T Consensus 147 ~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~ 226 (584)
T 3l6x_A 147 DMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226 (584)
T ss_dssp SHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHH
T ss_pred CHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHH
Confidence 44567777777777665311 123678887662 11 12335688999999999996543
Q ss_pred --ccccc---hHHHHHHHHhhh--cCCChhHHHHHHHHHHhhchhhhcc----------------------h--h-----
Q 007670 75 --NLSPY---ITKIINSITRNF--RDKNSALQATCISTVSSLSPRVGAS----------------------A--F----- 118 (594)
Q Consensus 75 --~isph---LpkIL~~IvrrL--kD~Ds~VR~Ac~~ALG~LAe~l~~~----------------------~--~----- 118 (594)
.|..+ ++.++.++...+ .+++..+.+-|+.+|..|+..+... + .
T Consensus 227 R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~ 306 (584)
T 3l6x_A 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ 306 (584)
T ss_dssp HHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGS
T ss_pred HHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhc
Confidence 22221 234444443332 3466677788888998888664210 0 0
Q ss_pred HHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC---cchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC
Q 007670 119 VTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP---DAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 119 ~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~---i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~ 193 (594)
...+++|+..|....++.+|..|+.||..++-+-... +...+ ...++.|++||.+++-.++..+..+|+-++...
T Consensus 307 ~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 307 PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence 1256788888854568999999999999998642111 11122 346889999999999999999999999988543
Q ss_pred cCcCCchHHHHHHHHhhhcCC--------cHHHHHHHHHHHHHHHH
Q 007670 194 AVDGSGLKGLVSCLLGFLSSQ--------DWAARKAAAEALWRLAV 231 (594)
Q Consensus 194 ~~~~pyf~~lm~~L~e~L~se--------Dw~lRKaAaDaLg~IA~ 231 (594)
..-...-...||.|+..|.+. .-.++..|+-+|+-|+.
T Consensus 387 ~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 221123456889999999865 35677888888887764
No 86
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.36 E-value=0.0008 Score=79.58 Aligned_cols=155 Identities=9% Similarity=-0.012 Sum_probs=114.8
Q ss_pred chHHHHHHHHhhhcC--CChhHHHHHHHHHHhhchhhhcc---h-hHHhHHHHHHHHcc----CCChhHHHHHHHHHHHH
Q 007670 79 YITKIINSITRNFRD--KNSALQATCISTVSSLSPRVGAS---A-FVTMLKLLSDALFT----EQDTNAQVGAALCLAAT 148 (594)
Q Consensus 79 hLpkIL~~IvrrLkD--~Ds~VR~Ac~~ALG~LAe~l~~~---~-~~~~lkPL~eaL~~----eq~k~vQ~~Aa~ALaav 148 (594)
-++.|++.+.+.+.. ++=..|+|+++|+|++++.+... + ...+++.|+..+-+ ++...+...+|++|.++
T Consensus 448 ~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry 527 (1023)
T 4hat_C 448 TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQY 527 (1023)
T ss_dssp HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHH
Confidence 455566666666665 45688999999999999988543 2 22366666664421 12223444778889888
Q ss_pred HhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC-c--------CcCCchHHHHHHHHhhhcCCcHHHH
Q 007670 149 IDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG-A--------VDGSGLKGLVSCLLGFLSSQDWAAR 219 (594)
Q Consensus 149 vE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~-~--------~~~pyf~~lm~~L~e~L~seDw~lR 219 (594)
.+-+.. -.+||+.++..|++.|..++.++..++..++..++... . +..||++.++..+..++..-+...+
T Consensus 528 ~~wl~~-~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~ 606 (1023)
T 4hat_C 528 PRFLKA-HWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQV 606 (1023)
T ss_dssp HHHHHH-CHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHH
T ss_pred HHHHhc-cHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHH
Confidence 877632 24689999999999997777778888888888888542 2 2248999999999999887778888
Q ss_pred HHHHHHHHHHHHHcC
Q 007670 220 KAAAEALWRLAVVEK 234 (594)
Q Consensus 220 KaAaDaLg~IA~a~g 234 (594)
-.+.|+++.|+.+.+
T Consensus 607 ~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 607 HTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCC
Confidence 899999999999887
No 87
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0033 Score=72.32 Aligned_cols=225 Identities=7% Similarity=0.016 Sum_probs=130.7
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHhhcCCCC-hHHHHHhhhhcCCCCCCcc-hHH-HHHHHHHHHh-hh-ccccch
Q 007670 6 KTSVNGLLNKLSDRDTYSQAAKELDSIAATVDPTL-LPTFLSCILSTNSSDKPGV-RKE-CIHVIATLSN-SH-NLSPYI 80 (594)
Q Consensus 6 k~rvl~~L~KLsDrDT~r~A~~eLD~LA~~Lppe~-lp~fLs~L~e~~ss~kp~~-RKa-aI~lLGvlae-~h-~isphL 80 (594)
-++++..|..-.|.+-+.-|+..|-.+....+... ...=|..|..|.....|.. .+. .+.-=.-+.+ .+ .+..+
T Consensus 378 L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ea- 456 (778)
T 3opb_A 378 TEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRT- 456 (778)
T ss_dssp HHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHC-
Confidence 44556666543566666667777777777654321 1112333333322111100 000 0110011112 12 33222
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hHH--hHHHHHHHHccCCCh--hHHHHHHHHHHHHHhhcCCC
Q 007670 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FVT--MLKLLSDALFTEQDT--NAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~~--~lkPL~eaL~~eq~k--~vQ~~Aa~ALaavvE~l~~~ 155 (594)
..+|.++..++.+++.+|..++++|+.|+..-.... +.. .++||+..|...... .++..|+.||+++.-..++.
T Consensus 457 -GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~ 535 (778)
T 3opb_A 457 -ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG 535 (778)
T ss_dssp -THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH
T ss_pred -cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH
Confidence 478888899999999999999999999997632111 222 899999999643322 27889999999998655432
Q ss_pred cc--hh-HHHHHHHHHHHhcC-Cch-------------hhHHHHHHHHHHHHhcCc---C-c-CCchH--HHHHHHHhhh
Q 007670 156 DA--GK-LGRMEVRLERLLKS-EVF-------------KAKAAGLVVVGSVIGSGA---V-D-GSGLK--GLVSCLLGFL 211 (594)
Q Consensus 156 i~--~y-L~~L~~RL~klL~s-~~f-------------kaK~alL~aIGSiA~a~~---~-~-~pyf~--~lm~~L~e~L 211 (594)
.. .| ....++.|+.+|.. +.. ..+--++-|++-+|.... + . .-.+. ..++.|.++|
T Consensus 536 ~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL 615 (778)
T 3opb_A 536 LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLM 615 (778)
T ss_dssp HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGG
T ss_pred HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHH
Confidence 21 11 12578889999973 221 114445557777776541 1 1 12233 4789999999
Q ss_pred cCCcHHHHHHHHHHHHHHHHH
Q 007670 212 SSQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 212 ~seDw~lRKaAaDaLg~IA~a 232 (594)
.++...+|++|+++|.-|+..
T Consensus 616 ~s~n~~VrrAA~elI~NL~~~ 636 (778)
T 3opb_A 616 LDENVPLQRSTLELISNMMSH 636 (778)
T ss_dssp GCSSHHHHHHHHHHHHHHHTS
T ss_pred hCCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999973
No 88
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.17 E-value=0.0043 Score=69.37 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHhhcC------CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccccchHHHHHHHHh
Q 007670 21 TYSQAAKELDSIAATVD------PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLSPYITKIINSITR 89 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lp------pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~isphLpkIL~~Ivr 89 (594)
..|-++..||.+-+.=| ...||.|+.+|. +.++..+.+|...|..+|.+. .|. -.-.||.+++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~LV~~L~----s~~~~~q~~Aa~~L~~La~~~~~~k~~V~--~~G~Ip~LV~ 97 (584)
T 3l6x_A 24 HERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLG----FRLDAVKSNAAAYLQHLCYRNDKVKTDVR--KLKGIPVLVG 97 (584)
T ss_dssp ----------------CCCCCCCCCCHHHHHHHTT----CSCHHHHHHHHHHHHHHHTTCHHHHHHHH--HTTHHHHHHH
T ss_pred cccchHHHHHHHHhcCCCCCCcccccHHHHHHHHC----CCCHHHHHHHHHHHHHHHcCChHHHHHHH--HcCCcHHHHH
Confidence 56678889999877522 223888888885 456788888999999998654 221 1246799999
Q ss_pred hhcCCChhHHHHHHHHHHhhchhh-hcc--hhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHHH
Q 007670 90 NFRDKNSALQATCISTVSSLSPRV-GAS--AFVT--MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRM 163 (594)
Q Consensus 90 rLkD~Ds~VR~Ac~~ALG~LAe~l-~~~--~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L 163 (594)
.|+.++..|+..++.||+.|+..- .+. .... .++||+..|....+..+|..|+.||..+.-+ +.. ..++..-
T Consensus 98 LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~--~~~k~~I~~~a 175 (584)
T 3l6x_A 98 LLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH--DSIKMEIVDHA 175 (584)
T ss_dssp GGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS--GGGHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhhHHHHhcc
Confidence 999999999999999999999742 111 1111 8999999995456788899999999888652 222 1222233
Q ss_pred HHHHHHHh------------------cCCchhhHHHHHHHHHHHHhcC
Q 007670 164 EVRLERLL------------------KSEVFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 164 ~~RL~klL------------------~s~~fkaK~alL~aIGSiA~a~ 193 (594)
++-|+++| ..+...++.-+.++|..++...
T Consensus 176 lp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~ 223 (584)
T 3l6x_A 176 LHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSER 223 (584)
T ss_dssp HHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCC
Confidence 44455544 1223456666777777766543
No 89
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.16 E-value=0.015 Score=58.60 Aligned_cols=197 Identities=13% Similarity=0.098 Sum_probs=140.9
Q ss_pred CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh
Q 007670 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG 114 (594)
Q Consensus 38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~ 114 (594)
.+.+..++..+. ..++-+|-.++.+|+-+-... .-...+.++++.|++.+++.|-.|-==|..+++.|-+...
T Consensus 32 e~~l~~L~~LL~----dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 32 KRALFLILELAG----EDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHHHTT----SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHh----ccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence 334666666664 467789999999999986663 5556899999999999999998775556666776666552
Q ss_pred --cchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 115 --ASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 115 --~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
++.+.-+..-|.+.+ ..++...+.=|+-.|..+ .+....++++..++.++++.+.++|.+.+.++-.+++-
T Consensus 108 L~~~~y~Kl~~aL~dli-k~~~~il~~eaae~Lgkl------kv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 108 MGSKTFLKAAKTLVSLL-ESPDDMMRIETIDVLSKL------QPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp BCHHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHC------CBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHh-cCCCchHHHHHHHHhCcC------CcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcc
Confidence 111222444444444 467777776666555555 34445788999999999999999999999999988865
Q ss_pred CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH-cCCccchhhhHHHH
Q 007670 193 GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVV-EKDAVPEFKGKCLK 246 (594)
Q Consensus 193 ~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a-~gd~f~py~~~~m~ 246 (594)
.++ ...+..++.-+.++|.++|-.+++-|+++|-.|+.. ..+.+.+-...+++
T Consensus 181 S~D-~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~ 234 (265)
T 3b2a_A 181 SAD-SGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISR 234 (265)
T ss_dssp CSS-CCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHH
Confidence 543 245667778899999999999999999999998875 33444433333433
No 90
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=97.15 E-value=0.0015 Score=77.21 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=115.4
Q ss_pred CCh-hHHHH-HHHHHHHHHhhc-CCCChHHHHHhhhhcCC-CCCCcchHHHHHHHHHHHhhh--ccc-cchHHHHHHHHh
Q 007670 17 SDR-DTYSQ-AAKELDSIAATV-DPTLLPTFLSCILSTNS-SDKPGVRKECIHVIATLSNSH--NLS-PYITKIINSITR 89 (594)
Q Consensus 17 sDr-DT~r~-A~~eLD~LA~~L-ppe~lp~fLs~L~e~~s-s~kp~~RKaaI~lLGvlae~h--~is-phLpkIL~~Ivr 89 (594)
.|+ |=.+. |...|..|+... +++.++.++..|.+... ++.| +|...+..+-++.--| .+. ..-.+|+.+|++
T Consensus 772 ~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~ 850 (997)
T 1vsy_5 772 KDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVS 850 (997)
T ss_dssp SHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTT
T ss_pred CcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 444 34555 666788887665 44459999999988776 6788 9999888888876666 333 345689999999
Q ss_pred hhcCCC-hhHHHHHHHHHHhhchhh-hcchhHHhHHHHHHHHc---cC---C-------Ch--hHHHHHHHHHHHHHhhc
Q 007670 90 NFRDKN-SALQATCISTVSSLSPRV-GASAFVTMLKLLSDALF---TE---Q-------DT--NAQVGAALCLAATIDAA 152 (594)
Q Consensus 90 rLkD~D-s~VR~Ac~~ALG~LAe~l-~~~~~~~~lkPL~eaL~---~e---q-------~k--~vQ~~Aa~ALaavvE~l 152 (594)
.|.|+. .-||++|+.||+-|-... ... .+..++..+. .. . .+ ...-||.++|.++|.+.
T Consensus 851 ~L~D~q~~EVRe~Aa~tLsgll~c~~~~~----~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~ 926 (997)
T 1vsy_5 851 NLYNEQFVEVRVRAASILSDIVHNWKEEQ----PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAF 926 (997)
T ss_dssp TTTCSSCHHHHHHHHHHHHHHHHSCCSHH----HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHcCCchh----hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhC
Confidence 999999 999999999999886443 111 1123333332 11 0 00 12239999999999999
Q ss_pred CCCc--chhHHHHHHHHHHHhcCCchhhHHHHHHHHH
Q 007670 153 QDPD--AGKLGRMEVRLERLLKSEVFKAKAAGLVVVG 187 (594)
Q Consensus 153 ~~~i--~~yL~~L~~RL~klL~s~~fkaK~alL~aIG 187 (594)
++.. .+++|.++..|....+.+.. ++.++=.+++
T Consensus 927 Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tls 962 (997)
T 1vsy_5 927 PYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTIS 962 (997)
T ss_dssp SCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHH
T ss_pred CCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHH
Confidence 9886 67999999999888877643 4444444444
No 91
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.12 E-value=0.00059 Score=76.82 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=89.9
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-
Q 007670 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA- 157 (594)
Q Consensus 82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~- 157 (594)
+|+|.|. .|+.+|+.+|..+|.||+.|++.-...... ..+.|++..++.+.+..|+..|+.||..+....++.+.
T Consensus 35 ~i~Pll~-~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLK-DLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHH-HHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHH-HcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 4566554 488899999999999999888643111111 16778887777788888888999888888765444332
Q ss_pred --------hhHHHHHHHHHHHhcCC--c------------hhhHHHHHHHHHHHHhcCcCcCCc--hHHHHHHHHhhhcC
Q 007670 158 --------GKLGRMEVRLERLLKSE--V------------FKAKAAGLVVVGSVIGSGAVDGSG--LKGLVSCLLGFLSS 213 (594)
Q Consensus 158 --------~yL~~L~~RL~klL~s~--~------------fkaK~alL~aIGSiA~a~~~~~py--f~~lm~~L~e~L~s 213 (594)
++|..++.++...+... . +..-..++.++.+++........+ -...++.|..+|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 23333333333333211 0 011123566777766443332111 12456666666643
Q ss_pred ---CcHHHHHHHHHHHHHHHH
Q 007670 214 ---QDWAARKAAAEALWRLAV 231 (594)
Q Consensus 214 ---eDw~lRKaAaDaLg~IA~ 231 (594)
....++.+|+++|+.+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~ 214 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSE 214 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHHHhc
Confidence 247899999999999876
No 92
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.11 E-value=0.013 Score=61.65 Aligned_cols=243 Identities=12% Similarity=0.105 Sum_probs=141.6
Q ss_pred HHHHHHHhhcCCCh--hHHHHHHHHHHHHHhhcCCCCh-----HHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhcccc
Q 007670 6 KTSVNGLLNKLSDR--DTYSQAAKELDSIAATVDPTLL-----PTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSP 78 (594)
Q Consensus 6 k~rvl~~L~KLsDr--DT~r~A~~eLD~LA~~Lppe~l-----p~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isp 78 (594)
|..++|-...+.+. |+.++--..-..|...+-.+.| ..++.-+....++++...||=+++.+-.++... .
T Consensus 24 k~~v~qe~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~---~ 100 (355)
T 3tjz_B 24 KSAVLQEARVFNETPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA---E 100 (355)
T ss_dssp HHHHHHHGGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS---S
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH---H
Confidence 44567766666654 5666543333333333333443 344444455677889999999999998887763 1
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcch
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAG 158 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~ 158 (594)
-+=-..+++.+-++||++.||..|..+|+.+.+.-. ...+.+++-.+| .+.++.|-..|+.|..+++...++
T Consensus 101 e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m---~~~l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe---- 172 (355)
T 3tjz_B 101 DVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM---LQAIERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFD---- 172 (355)
T ss_dssp CGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT---HHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHH----
T ss_pred HHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH---HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHH----
Confidence 111457889999999999999999999999975431 112666666666 789999999999999999876543
Q ss_pred hHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccc
Q 007670 159 KLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVP 238 (594)
Q Consensus 159 yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~ 238 (594)
.+...++.+..++...+..+...++.++--+.... ...+..+++.+.+.-..+.|.. +..|-.++....+...
T Consensus 173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d---~~a~~kLv~~l~~~~l~~~~~q----~~llr~l~~~~~~d~~ 245 (355)
T 3tjz_B 173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKND---RLAVSKMISKFTRHGLKSPFAY----CMMIRVASRQLEDEDG 245 (355)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHSSCCSCHHHH----HHHHHHHTCC------
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc---hHHHHHHHHHHhcCCCcChHHH----HHHHHHHHHhccccch
Confidence 44557778888998888777655555555544322 1133444555544322246763 4433333222211111
Q ss_pred hhhhHHHHHHHhcchhH----HHHHHhhcCCC
Q 007670 239 EFKGKCLKIFESKRFDK----MIEAWKQVPDL 266 (594)
Q Consensus 239 py~~~~m~sLEs~RfDK----~i~lWk~i~~v 266 (594)
.....++..++.+==-+ .|+.-|.|-..
T Consensus 246 ~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l 277 (355)
T 3tjz_B 246 SRDSPLFDFIESCLRNKHEMVVYEAASAIVNL 277 (355)
T ss_dssp -----------CCCCCSSHHHHHHHHHHHTC-
T ss_pred hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence 12334444444332112 66666666554
No 93
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.06 E-value=0.0043 Score=69.23 Aligned_cols=168 Identities=10% Similarity=0.010 Sum_probs=101.5
Q ss_pred HHHHHhhcCCCh--h-----HHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch
Q 007670 8 SVNGLLNKLSDR--D-----TYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI 80 (594)
Q Consensus 8 rvl~~L~KLsDr--D-----T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL 80 (594)
=++-+|.|++|= | -+-.|+|.|-.+ .+||++ +..+...+ .....+.|.+|-.+++.|-.+ .. ++.. |
T Consensus 224 LCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV-~~l~~~~WEVRHGGLLGLKYL-~D-LL~~-L 297 (800)
T 3oc3_A 224 YEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLV-GFLDSGDWQVQFSGLIALGYL-KE-FVED-K 297 (800)
T ss_dssp HHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHT-TGGGCSCHHHHHHHHHHHHHT-GG-GCCC-H
T ss_pred HHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHH-hhcCCCCeeehhhhHHHHHHH-HH-HHHH-H
Confidence 345667787652 1 345667777777 899988 55444444 445677899999999999999 22 3322 9
Q ss_pred HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHH-HHHHHHHHhhcCCCcchh
Q 007670 81 TKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGA-ALCLAATIDAAQDPDAGK 159 (594)
Q Consensus 81 pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~A-a~ALaavvE~l~~~i~~y 159 (594)
+.+++.++.+|+|+|--||.+|+.+|--++ . .+....++.-|.+.|.+..|-.+-.++ ..-|++++..-.. ...
T Consensus 298 d~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--~-p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~ 372 (800)
T 3oc3_A 298 DGLCRKLVSLLSSPDEDIKLLSAELLCHFP--I-TDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSI 372 (800)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--C-SSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCC
T ss_pred HHHHHHHHhhcCCcccHHHHHHHHHhhhhc--c-hhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--ccc
Confidence 999999999999999999999999999888 1 011223666666666322221111111 1123333332111 011
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHH
Q 007670 160 LGRMEVRLERLLKSEVFKAKAAGLVVV 186 (594)
Q Consensus 160 L~~L~~RL~klL~s~~fkaK~alL~aI 186 (594)
.+.|+|||.-.|.|.-.-+|.+++.++
T Consensus 373 dp~LVPRL~PFLRHtITSVR~AVL~TL 399 (800)
T 3oc3_A 373 PPERLKDIFPCFTSPVPEVRTSILNMV 399 (800)
T ss_dssp CSGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred ChHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 125555555555555555555555444
No 94
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0062 Score=70.13 Aligned_cols=170 Identities=12% Similarity=0.153 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHhhcC---------C-CChHHHHHhhhhcCCCC-------C--C-cchHHHHHHHHHHHhhh-----c
Q 007670 21 TYSQAAKELDSIAATVD---------P-TLLPTFLSCILSTNSSD-------K--P-GVRKECIHVIATLSNSH-----N 75 (594)
Q Consensus 21 T~r~A~~eLD~LA~~Lp---------p-e~lp~fLs~L~e~~ss~-------k--p-~~RKaaI~lLGvlae~h-----~ 75 (594)
....|++.|-.|+-+-+ + +.+++|+..|......+ + + ..+.+|+++|+.||... -
T Consensus 517 ~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 517 IRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 46688888888875432 1 22799999987311111 1 1 23889999999998763 1
Q ss_pred ccc-ch--HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc--chh------HH--hHHHHHHHHccCCChhHHHHHH
Q 007670 76 LSP-YI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA--SAF------VT--MLKLLSDALFTEQDTNAQVGAA 142 (594)
Q Consensus 76 isp-hL--pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~--~~~------~~--~lkPL~eaL~~eq~k~vQ~~Aa 142 (594)
+.. -+ ...|+.|...|.+.+..||+||++++..|+..-.- +-+ .. -+++|+..+ +..+..+|.+|+
T Consensus 597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll-~s~D~~~r~AAa 675 (778)
T 3opb_A 597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL-QLSDVESQRAVA 675 (778)
T ss_dssp HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG-GCSCHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH-cCCCHHHHHHHH
Confidence 111 22 24799999999999999999999999999964421 011 11 377777777 778999999999
Q ss_pred HHHHHHHhhcCCCcchhH--HHHHHHHHHHhcC--CchhhHHHHHHHHHHHHh
Q 007670 143 LCLAATIDAAQDPDAGKL--GRMEVRLERLLKS--EVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 143 ~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s--~~fkaK~alL~aIGSiA~ 191 (594)
.||+.+...-+......+ ...++.++.+|.. ++-.++.-++.++..++.
T Consensus 676 gALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 676 AIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 999998543211111111 3466677777766 566666667777887774
No 95
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.84 E-value=0.0055 Score=60.84 Aligned_cols=147 Identities=9% Similarity=0.022 Sum_probs=101.8
Q ss_pred HHHHHhhhcCCCh--hHHHHHHHHHHhhchhhhcc--hhH--HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670 84 INSITRNFRDKNS--ALQATCISTVSSLSPRVGAS--AFV--TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (594)
Q Consensus 84 L~~IvrrLkD~Ds--~VR~Ac~~ALG~LAe~l~~~--~~~--~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~ 157 (594)
+|.+++.|+.+|+ .|+..++.++..|+..-.+. ... -.++||+..| ...++.+|..|+.||..+.-.-+ ...
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~-~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLL-KVQNEDVQRAVCGALRNLVFEDN-DNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCH-HHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCH-HHH
Confidence 6788899998887 88877888998888654221 111 1678888888 56789999999999999865211 111
Q ss_pred hhHHH--HHHHHHHHhc-CCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc----------------CCcHHH
Q 007670 158 GKLGR--MEVRLERLLK-SEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS----------------SQDWAA 218 (594)
Q Consensus 158 ~yL~~--L~~RL~klL~-s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~----------------seDw~l 218 (594)
..+.. -+|.|+++|. +++..++..+.+++..++.....-.......|+.|.+.|. ..|-.+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 22222 6778899997 5788899999999998875432211223345666666442 125578
Q ss_pred HHHHHHHHHHHHHH
Q 007670 219 RKAAAEALWRLAVV 232 (594)
Q Consensus 219 RKaAaDaLg~IA~a 232 (594)
+..|+.+|..|+..
T Consensus 168 ~~na~~~L~nLss~ 181 (233)
T 3tt9_A 168 FYNVTGCLRNMSSA 181 (233)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC
Confidence 88899999998763
No 96
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.81 E-value=0.04 Score=66.02 Aligned_cols=242 Identities=15% Similarity=0.182 Sum_probs=150.0
Q ss_pred hHHHHHHHHHhhcCC------ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh--
Q 007670 3 HALKTSVNGLLNKLS------DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-- 74 (594)
Q Consensus 3 ~~Lk~rvl~~L~KLs------DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-- 74 (594)
+.+|+.++..+.... +.--.....+.|-.|+..-=|+.-|-|+..|.+...+ .+..+..++..|..+++..
T Consensus 88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~ 166 (1204)
T 3a6p_A 88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT 166 (1204)
T ss_dssp HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence 468889999887762 2223344455666677764345666666666655443 4567888999999998873
Q ss_pred --------------ccccchHHHHHHHHhhhcC-------------------CChhHHHHHHHHHHhhchhhhcchh-H-
Q 007670 75 --------------NLSPYITKIINSITRNFRD-------------------KNSALQATCISTVSSLSPRVGASAF-V- 119 (594)
Q Consensus 75 --------------~isphLpkIL~~IvrrLkD-------------------~Ds~VR~Ac~~ALG~LAe~l~~~~~-~- 119 (594)
.+..+++.|++.+...|++ ++..++.+++.++..+..|+.-.-. .
T Consensus 167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~ 246 (1204)
T 3a6p_A 167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAE 246 (1204)
T ss_dssp SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhc
Confidence 2455677888888887765 2345888999999988888731111 0
Q ss_pred --HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCC-----cchhH-HHHHHHHHHHhc-------CC-chh--hHHH
Q 007670 120 --TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDP-----DAGKL-GRMEVRLERLLK-------SE-VFK--AKAA 181 (594)
Q Consensus 120 --~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~-----i~~yL-~~L~~RL~klL~-------s~-~fk--aK~a 181 (594)
.++.-++ .++ +++.++..|+-||..++..-..+ ....| ...+.+++..+. .. ++. -|-+
T Consensus 247 ~~~ll~~l~-~~l--~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~ 323 (1204)
T 3a6p_A 247 NCKLLEILC-LLL--NEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLC 323 (1204)
T ss_dssp TSHHHHHHH-HGG--GCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHH
T ss_pred cchHHHHHH-HHc--CCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHH
Confidence 1333333 333 36778899999999999743211 12222 222445555542 11 121 1111
Q ss_pred -HHHHHHHHHhc--Cc----CcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHc---C-CccchhhhHHHHHH
Q 007670 182 -GLVVVGSVIGS--GA----VDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVE---K-DAVPEFKGKCLKIF 248 (594)
Q Consensus 182 -lL~aIGSiA~a--~~----~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~---g-d~f~py~~~~m~sL 248 (594)
++..+|.-... ++ ...+.+..+++.|..|...++-.+-..+++....+.... . +.+.||...++.++
T Consensus 324 ~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl 401 (1204)
T 3a6p_A 324 QVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRAS 401 (1204)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 44444431111 11 134788899999999999888888888888888777642 1 45677777777654
No 97
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.71 E-value=0.038 Score=54.78 Aligned_cols=147 Identities=12% Similarity=-0.000 Sum_probs=96.2
Q ss_pred hHHHHHhhhhcCCCCCC--cchHHHHHHHHHHHhhh-ccccch--HHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc
Q 007670 41 LPTFLSCILSTNSSDKP--GVRKECIHVIATLSNSH-NLSPYI--TKIINSITRNFRDKNSALQATCISTVSSLSPRVGA 115 (594)
Q Consensus 41 lp~fLs~L~e~~ss~kp--~~RKaaI~lLGvlae~h-~isphL--pkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~ 115 (594)
+|+++..|. ++++ .++..+...|..+|... -....+ .-.+|.+++.|+.++..|+..+++||+.|+..-.+
T Consensus 10 i~~lV~lL~----s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 10 LERAVSMLE----ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp HHHHHHTCC----SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC----CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH
Confidence 888887775 3444 67888888999988665 111111 23579999999999999999999999999975332
Q ss_pred ch-hH---HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhHHHHHHHHHHHhc----------------CC
Q 007670 116 SA-FV---TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKLGRMEVRLERLLK----------------SE 174 (594)
Q Consensus 116 ~~-~~---~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL~~L~~RL~klL~----------------s~ 174 (594)
.- .+ -.++||+..|....+..+|..|+.+|-.+-- .+... .+...-++.|..++. ..
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~--~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS--NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--SGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--ChhhHHHHHhccHHHHHHHHhccccCCcccccccccccc
Confidence 21 11 1899999999534678899988888877742 22221 122222344444331 12
Q ss_pred chhhHHHHHHHHHHHHhcC
Q 007670 175 VFKAKAAGLVVVGSVIGSG 193 (594)
Q Consensus 175 ~fkaK~alL~aIGSiA~a~ 193 (594)
...++.-+.+++..++.+.
T Consensus 164 ~~~v~~na~~~L~nLss~~ 182 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAG 182 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3456666777888777654
No 98
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.66 E-value=0.0067 Score=67.69 Aligned_cols=172 Identities=12% Similarity=0.070 Sum_probs=123.2
Q ss_pred HHhhhhcCCCC-CCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHH
Q 007670 45 LSCILSTNSSD-KPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLK 123 (594)
Q Consensus 45 Ls~L~e~~ss~-kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lk 123 (594)
|+.+.||.++. =+|+|..|--+||.+ .|.-.+ -+++-.+++.+..+.=.||+...-+|--+.+.+.+ +..+++
T Consensus 229 LDRFGDYVSDqVVAPVRETaAQtLGaL--~hLp~e--~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv~ 302 (800)
T 3oc3_A 229 TDKFNDFVDDRTVAPVRDAAAYLLSRI--YPLIGP--NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED--KDGLCR 302 (800)
T ss_dssp HBCCBBCSSSSCBCHHHHHHHHHHHHH--TTTSCS--CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC--HHHHHH
T ss_pred hccccccccCeeeeehHHHHHHHHHHH--HhCChh--HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH--HHHHHH
Confidence 34446765543 379999999999998 663333 35566666777777778999999999988555432 445777
Q ss_pred HHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCC-c-hhhHHHHHHHHHHHHhcCcCcCCchH
Q 007670 124 LLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSE-V-FKAKAAGLVVVGSVIGSGAVDGSGLK 201 (594)
Q Consensus 124 PL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~-~-fkaK~alL~aIGSiA~a~~~~~pyf~ 201 (594)
.++..| .+.+-.|+..||.+|--++ ..+.++.|+..+-.+|.+- + -.....++.+++.+..-...... .+
T Consensus 303 aVL~GL-~D~DDDVRAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~-dp 374 (800)
T 3oc3_A 303 KLVSLL-SSPDEDIKLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSI-PP 374 (800)
T ss_dssp HHHHHT-TCSSHHHHHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCC-CS
T ss_pred HHHhhc-CCcccHHHHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccccc-Ch
Confidence 777777 7888999998888887666 2356777888777777542 2 22355677777776654433221 12
Q ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Q 007670 202 GLVSCLLGFLSSQDWAARKAAAEALWRLA 230 (594)
Q Consensus 202 ~lm~~L~e~L~seDw~lRKaAaDaLg~IA 230 (594)
.++|.|-+||...--.+|++++.+|.++.
T Consensus 375 ~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 375 ERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 88999999999999999999999997765
No 99
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=96.64 E-value=0.36 Score=51.41 Aligned_cols=251 Identities=17% Similarity=0.170 Sum_probs=161.0
Q ss_pred HHHHHHHhhcC---CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHH
Q 007670 6 KTSVNGLLNKL---SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITK 82 (594)
Q Consensus 6 k~rvl~~L~KL---sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpk 82 (594)
+-||+..||.- +| +..=.-+..+..|+.+-+|+-++-||..|.++...+...+||-++--|+..|..+ ..++++
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~el~~~ 100 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IELLLK 100 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHHH
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 45666666654 44 4454556777777777788779999999999888888899999988877766544 345899
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc----chh------H-----HhHHHHHHHHccCCChhHHHHHHHHHHH
Q 007670 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAF------V-----TMLKLLSDALFTEQDTNAQVGAALCLAA 147 (594)
Q Consensus 83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~----~~~------~-----~~lkPL~eaL~~eq~k~vQ~~Aa~ALaa 147 (594)
+++.+...|+|.|+.|-+.+..+.+.+-..+.+ .+. . .-+|--+-.++...+.++...+.=-+..
T Consensus 101 ~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 101 LIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 999999999999998887777777776543332 111 1 1344444444455577777777777777
Q ss_pred HHhhc--C--CC---------c--------chhH---------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcC
Q 007670 148 TIDAA--Q--DP---------D--------AGKL---------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDG 197 (594)
Q Consensus 148 vvE~l--~--~~---------i--------~~yL---------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~ 197 (594)
+|..- + +. + .++| ..|+.+|++.|.++.... ..+..+|++++...+.-+
T Consensus 181 VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss-~~l~a~lnsLa~Iak~RP 259 (386)
T 3o2t_A 181 LIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISS-INLTTALGSLANIARQRP 259 (386)
T ss_dssp HHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCH-HHHHHHHHHHHHHHHHSG
T ss_pred HHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHccccccc-HHHHHHHHHHHHHHHhcH
Confidence 77431 0 10 0 1122 458889999998764333 455667777776666666
Q ss_pred CchHHHHHHHHhhhcCC--------cHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH-HHHHHhhcC
Q 007670 198 SGLKGLVSCLLGFLSSQ--------DWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK-MIEAWKQVP 264 (594)
Q Consensus 198 pyf~~lm~~L~e~L~se--------Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK-~i~lWk~i~ 264 (594)
.|...++++|..+-.+- --.+||..=-.|..+... ..-.||...+-..|+. +.. ..++.+.+|
T Consensus 260 ~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~--p~s~~~~~~I~~~L~~--Lg~s~~Ei~~~~~ 331 (386)
T 3o2t_A 260 MFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKH--PASLEFQAQITTLLVD--LGTPQAEIARNMP 331 (386)
T ss_dssp GGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTS--GGGGGGHHHHHHHHHH--TTCCHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcC--CCchhhHHHHHHHHHH--HcccHHHHHHhcc
Confidence 78888899888764321 123444444444444332 3445888888888875 222 344445555
No 100
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.18 Score=49.49 Aligned_cols=213 Identities=17% Similarity=0.173 Sum_probs=147.2
Q ss_pred HHHHHhhcCCChh---HHHHHHHHHHHHHhhcCCCChHHHHHhhhhc-CCCCCCcchHHHHHHHHHHHhhhccccc-hHH
Q 007670 8 SVNGLLNKLSDRD---TYSQAAKELDSIAATVDPTLLPTFLSCILST-NSSDKPGVRKECIHVIATLSNSHNLSPY-ITK 82 (594)
Q Consensus 8 rvl~~L~KLsDrD---T~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~-~ss~kp~~RKaaI~lLGvlae~h~isph-Lpk 82 (594)
.++..|-++=|+| -++-|+..|-.++...|. -+-+++.-|.-- ..+.--+.-.+--++||+++... |. +.+
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~---Pe~v~~ 107 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK---PELVKS 107 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC---HHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC---HHHHHh
Confidence 3444455555667 577788888888887653 344444444322 23444566678889999999876 22 467
Q ss_pred HHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHH
Q 007670 83 IINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGR 162 (594)
Q Consensus 83 IL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~ 162 (594)
++|.|..-++=.|+.+|=--..+|+.++..... -...+++-++..| ..+|. ....++ -.|++++++.-..|...
T Consensus 108 vVp~lfanyrigd~kikIn~~yaLeeIaranP~-l~~~v~rdi~sml-tskd~-~Dkl~a---LnFi~alGen~~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIGDEKTKINVSYALEEIAKANPM-LMASIVRDFMSML-SSKNR-EDKLTA---LNFIEAMGENSFKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHT-SCSSH-HHHHHH---HHHHHTCCTTTHHHHGG
T ss_pred hHHHHHHHHhcCCccceecHHHHHHHHHHhChH-HHHHHHHHHHHHh-cCCCh-HHHHHH---HHHHHHHhccCccccCc
Confidence 788888888888999988888888888876621 0122555555555 44442 222333 36888888888889999
Q ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC
Q 007670 163 MEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK 234 (594)
Q Consensus 163 L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g 234 (594)
-+|||+.||...+--+++.++.+++-+|... |-+..++-...+-+.+..--+.+..-++|+.|+...+
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~n----pklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l~e~ 249 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLN----DKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEG 249 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC----HHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC--
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcC----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888655 3366655555555566666777889999999987654
No 101
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.17 E-value=0.044 Score=55.61 Aligned_cols=137 Identities=13% Similarity=0.178 Sum_probs=101.3
Q ss_pred CCCCcchHHHHHHHHHH----Hhh-hccccc-hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHH
Q 007670 54 SDKPGVRKECIHVIATL----SNS-HNLSPY-ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSD 127 (594)
Q Consensus 54 s~kp~~RKaaI~lLGvl----ae~-h~isph-LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~e 127 (594)
+.++.+=..++-.|..+ .+. +.+.+| ...++|+++.+|-|+-..||+++...+-.+..-+ |...++..+++
T Consensus 98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~---~~~~v~~~l~~ 174 (266)
T 2of3_A 98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTPMLLD 174 (266)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH---CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC---CHHHHHHHHHH
Confidence 34555555666665554 332 256666 5899999999999999999999999998887655 22237777888
Q ss_pred HHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670 128 ALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 128 aL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~ 195 (594)
++ ..++.-+-.+.+.+|..+++.-+-....++. |-+-+.++|+.++-.+|.+++.++..+-...|+
T Consensus 175 g~-ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~-~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd 240 (266)
T 2of3_A 175 AL-KSKNARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPFVGDKDVNVRNAAINVLVACFKFEGD 240 (266)
T ss_dssp GG-GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGC-HHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HH-ccCCHHHHHHHHHHHHHHHHhcCCCcccccc-chHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 88 5567777788999999999987655333331 117788999999999999999999987744333
No 102
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.04 E-value=0.092 Score=52.66 Aligned_cols=149 Identities=9% Similarity=-0.025 Sum_probs=110.4
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHH-HccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDA-LFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~ea-L~~eq~k~vQ~~Aa~ALaavvE~l~~~i~ 157 (594)
.++.+++...+..+|+.=.||-++++.||++ ... .-+.|++.. +.++.+=.|+.-++.++..++...+++
T Consensus 68 ~~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 68 DGEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred CHHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 4889999999999998889999999999998 322 223444444 546677789999999999999754433
Q ss_pred hhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCcc
Q 007670 158 GKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAV 237 (594)
Q Consensus 158 ~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f 237 (594)
.+++.+.+.++++++.++.+++..+.--+. -..+....+.+++.|.....++++-+||+.+.+|--++-..++.+
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~-~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V 213 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTN-RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLV 213 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGG-STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhc-cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHH
Confidence 155677889999999999887765432111 112335556788999998889999999999999999987665555
Q ss_pred chhh
Q 007670 238 PEFK 241 (594)
Q Consensus 238 ~py~ 241 (594)
..|.
T Consensus 214 ~~~~ 217 (240)
T 3l9t_A 214 KIEL 217 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 103
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.01 E-value=0.022 Score=67.81 Aligned_cols=192 Identities=14% Similarity=0.071 Sum_probs=121.7
Q ss_pred cccchHHHHHHHHhhhcCCC---------------------h-hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccC-
Q 007670 76 LSPYITKIINSITRNFRDKN---------------------S-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTE- 132 (594)
Q Consensus 76 isphLpkIL~~IvrrLkD~D---------------------s-~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~e- 132 (594)
..|++.++..++++++.=|+ . .+++.-.+++.-++.-..+..+..++..|-..+.++
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~ 490 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTE 490 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 45678888888888887553 1 234455555554442221122223444444444332
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhh-HHHHHHHHHHHHhcCc----CcCCchHHHHHH
Q 007670 133 QDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKA-KAAGLVVVGSVIGSGA----VDGSGLKGLVSC 206 (594)
Q Consensus 133 q~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fka-K~alL~aIGSiA~a~~----~~~pyf~~lm~~ 206 (594)
.+-..-.++|.||.++..++.++. .++|+.+++-|+.+.+++.-+- |+.+.+.|--+.+-=. ....||+.+|..
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~ 570 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNK 570 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHH
Confidence 245556699999999986666433 4789999999999997764322 3333332222222111 224789999999
Q ss_pred HHhhhcCCcHHHHHHHHHHHHHHHHHcCCcc--------chhhhHHHHHHHhc--chhH--HHHHHhhcCCCC
Q 007670 207 LLGFLSSQDWAARKAAAEALWRLAVVEKDAV--------PEFKGKCLKIFESK--RFDK--MIEAWKQVPDLS 267 (594)
Q Consensus 207 L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f--------~py~~~~m~sLEs~--RfDK--~i~lWk~i~~v~ 267 (594)
|.+++.+.+-.++-+||+|+..|+..-+..| .||..++++.+... +++. .++++..+.-+-
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi 643 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMI 643 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 9999998888888999999999999766544 57988888766655 3333 555555555443
No 104
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.01 E-value=0.074 Score=53.63 Aligned_cols=145 Identities=16% Similarity=0.101 Sum_probs=109.5
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG 199 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py 199 (594)
.+.-|++-| ++.|..++..|..+|..++..+++.. ...+.++++++++++++++=++.--++-|++.+..-..-....
T Consensus 34 ~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 444455555 89999999999999999999987765 5679999999999999999888777888899887444333466
Q ss_pred hHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHHHhcchhH-----HHHHHhhcCCCCCCC
Q 007670 200 LKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIFESKRFDK-----MIEAWKQVPDLSEEA 270 (594)
Q Consensus 200 f~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sLEs~RfDK-----~i~lWk~i~~v~~~~ 270 (594)
|..++..|.+.+.+.+-.+|-.|+|.||.+ .. -.+.+-.-..+.+|= --.|. +|-+..+|+...+|.
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv--~~~~~~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP--LEDSKLVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB--SCCCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc--ccchHHHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCH
Confidence 789999999999999999999999999999 11 122233333343222 22333 999999999776544
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=95.93 E-value=0.022 Score=64.11 Aligned_cols=187 Identities=12% Similarity=0.072 Sum_probs=106.2
Q ss_pred CChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccch--HHHH-HHHHhhhcCCChhHHHHHHHHHHhhchhhh-
Q 007670 39 TLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYI--TKII-NSITRNFRDKNSALQATCISTVSSLSPRVG- 114 (594)
Q Consensus 39 e~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphL--pkIL-~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~- 114 (594)
+++.|+|..| +++++..|..|..+|+.+++.......+ .+++ +.|.+.|.|++..||.+|+.||+.|+..-.
T Consensus 34 ~~i~Pll~~L----~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 34 DKILPVLKDL----KSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HTTHHHHHHH----SSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred hhHHHHHHHc----CCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 3577788765 4688999999999999998765111221 2344 456677999999999999999999986642
Q ss_pred cchhH----HhHHHHHHHHcc-------------CCChh-------HHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHH
Q 007670 115 ASAFV----TMLKLLSDALFT-------------EQDTN-------AQVGAALCLAATIDAAQDPDAGKL--GRMEVRLE 168 (594)
Q Consensus 115 ~~~~~----~~lkPL~eaL~~-------------eq~k~-------vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~ 168 (594)
+-+.. .++.||...|-. ...+. +...++.+|-.++|+..+.. .++ ...+++|+
T Consensus 110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~-~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIH-EAVATKQTILRLL 188 (684)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHTCHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHH-HHHHhcccHHHHH
Confidence 11111 166777666520 01111 22245667777777654322 111 12445555
Q ss_pred HHhcC-C--chhhHHHHHHHHHHHHhcCcCc-----CCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 169 RLLKS-E--VFKAKAAGLVVVGSVIGSGAVD-----GSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 169 klL~s-~--~fkaK~alL~aIGSiA~a~~~~-----~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
.+|-+ . ...+..+++.++..+..-...+ .-....++..|......++ ..|..++-.|.-|-.
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhh
Confidence 55422 2 3456677888888766432221 0001123344444333333 345566666655543
No 106
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=95.47 E-value=0.003 Score=63.09 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=28.6
Q ss_pred hhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHH
Q 007670 48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIST 105 (594)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~A 105 (594)
|.....++++.+|.++...| .+ ..+...++|++..||.+++..
T Consensus 103 L~~ll~D~d~~VR~~aA~~l---------~~------~~L~~L~~D~d~~VR~~aA~~ 145 (244)
T 1lrv_A 103 LSALMFDEDREVRITVADRL---------PL------EQLEQMAADRDYLVRAYVVQR 145 (244)
T ss_dssp GGGTTTCSCHHHHHHHHHHS---------CT------GGGGGGTTCSSHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHhC---------CH------HHHHHHHcCCCHHHHHHHHHh
Confidence 44445677888888877743 11 234555788888888887763
No 107
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.42 E-value=1.2 Score=44.88 Aligned_cols=201 Identities=12% Similarity=0.135 Sum_probs=128.9
Q ss_pred HHHHHHHHHhhcCC--ChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchH
Q 007670 4 ALKTSVNGLLNKLS--DRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYIT 81 (594)
Q Consensus 4 ~Lk~rvl~~L~KLs--DrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLp 81 (594)
.-+-||...|+.-. .+|..=..+..+..++.+-+|+-+|-|+.-+.+...++...+||-++--|+.+|..+ -.+++
T Consensus 12 ~~~~~v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k--~~l~~ 89 (257)
T 3gs3_A 12 TARAKVVDWCNELVIASPSTKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK--VELLP 89 (257)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHH
T ss_pred cHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 34567777777652 225444556666667777778779999999988876677889999998888877665 24788
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc----chh------H-----HhHHHHHHHHccCCChhHHHHHHHHHH
Q 007670 82 KIINSITRNFRDKNSALQATCISTVSSLSPRVGA----SAF------V-----TMLKLLSDALFTEQDTNAQVGAALCLA 146 (594)
Q Consensus 82 kIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~----~~~------~-----~~lkPL~eaL~~eq~k~vQ~~Aa~ALa 146 (594)
++++.+...|+|.|+.|-+-+..+.+.+-..+.+ .+. . .-+|--+-.++...+.++...+.--+.
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e 169 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLE 169 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 9999999999999998877777777766544432 211 1 144444444455557777777777777
Q ss_pred HHHhhc--C--C------C--------cchhH---------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCc
Q 007670 147 ATIDAA--Q--D------P--------DAGKL---------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSG 199 (594)
Q Consensus 147 avvE~l--~--~------~--------i~~yL---------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~py 199 (594)
.+|..- + + + ..+++ ..++.+|++.+.++..- -+.+..++++++...+.-+.|
T Consensus 170 ~vIl~qT~~~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~is-s~~l~a~lnsL~~Iak~RP~~ 248 (257)
T 3gs3_A 170 GVVVLQSFADEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHIS-SVNLIACTSSLCTIAKMRPIF 248 (257)
T ss_dssp HHHHHTSCCCTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhhcCCCcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccc-hHHHHHHHHHHHHHHHhCcHH
Confidence 777421 1 1 0 01222 34777888887765321 123555666666555554556
Q ss_pred hHHHHHHH
Q 007670 200 LKGLVSCL 207 (594)
Q Consensus 200 f~~lm~~L 207 (594)
...+++.+
T Consensus 249 ~~rIl~a~ 256 (257)
T 3gs3_A 249 MGAVVEAF 256 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 65566554
No 108
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.06 E-value=0.11 Score=52.00 Aligned_cols=131 Identities=10% Similarity=-0.043 Sum_probs=90.5
Q ss_pred HHHHhhcC--CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhh-cCCCCCCcchHHHHHHHHHHHhhhccccchHHHHH
Q 007670 9 VNGLLNKL--SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILS-TNSSDKPGVRKECIHVIATLSNSHNLSPYITKIIN 85 (594)
Q Consensus 9 vl~~L~KL--sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e-~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~ 85 (594)
++....+| +|.|+.|+.+-.| |.+. + .....|..|.+ ....+.+.+|.-+-++|+-+|... +.+.+++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~l--Lg~~-~--~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~----~pe~~l~ 142 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFL--FGYL-S--KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKI----EYKKALP 142 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHH--HHHT-T--TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHH----CTTTTHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHH--HHhc-c--CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhc----CHHHHHH
Confidence 44455555 4557888766663 3333 3 34666666665 455667899999888888877522 2233677
Q ss_pred HHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHH
Q 007670 86 SITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAAT 148 (594)
Q Consensus 86 ~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaav 148 (594)
.+.+-++|++.-||+++.+.+--.+...........+.|+++.|.++++..||.+.+.+|--+
T Consensus 143 ~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 143 IIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDI 205 (240)
T ss_dssp HHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 888999999999999999887654432111123347889999998999999999999887654
No 109
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=94.88 E-value=0.69 Score=52.37 Aligned_cols=119 Identities=15% Similarity=0.159 Sum_probs=77.9
Q ss_pred HHHHHhhcC-CChhHHHHHHHHHHHHHhhc--------------------------CCCChHHHHHhhhhcCCCCCCcch
Q 007670 8 SVNGLLNKL-SDRDTYSQAAKELDSIAATV--------------------------DPTLLPTFLSCILSTNSSDKPGVR 60 (594)
Q Consensus 8 rvl~~L~KL-sDrDT~r~A~~eLD~LA~~L--------------------------ppe~lp~fLs~L~e~~ss~kp~~R 60 (594)
.++..|.+= .|.|+.+.+++.|-.+-..- .++.|+.++.+| .+.+-++|
T Consensus 64 ~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL----~~~df~vR 139 (651)
T 3grl_A 64 HLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLL----EEFDFHVR 139 (651)
T ss_dssp HHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHT----TCCCHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHh----cCccHHHH
Confidence 456666665 46678888888775433221 122255555555 45778899
Q ss_pred HHHHHHHHHHHhhh--ccccc---hHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc-chhHH---hHHHHHHHHc
Q 007670 61 KECIHVIATLSNSH--NLSPY---ITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-SAFVT---MLKLLSDALF 130 (594)
Q Consensus 61 KaaI~lLGvlae~h--~isph---LpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~-~~~~~---~lkPL~eaL~ 130 (594)
-.++.+|.+|+... -+... -|.=++.++..|.|+.-.||..+.-.|..|+..-.+ +-..+ .+.+||..+-
T Consensus 140 ~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~ 218 (651)
T 3grl_A 140 WPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIIT 218 (651)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHH
Confidence 99999999998665 12221 235678889999999999999999888888876543 11222 2555555553
No 110
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.03 E-value=3.1 Score=49.37 Aligned_cols=195 Identities=11% Similarity=0.065 Sum_probs=123.8
Q ss_pred HHHHHHHHHhhcCCCC--hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhh-----ccc-cchHHHHHHHHhhhcCCCh
Q 007670 25 AAKELDSIAATVDPTL--LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSH-----NLS-PYITKIINSITRNFRDKNS 96 (594)
Q Consensus 25 A~~eLD~LA~~Lppe~--lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h-----~is-phLpkIL~~IvrrLkD~Ds 96 (594)
|++.|-.+....-|+. +..|...+........+..|+.+++++|.|+.-+ .+. ..++.|...+.+.+...|.
T Consensus 375 a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~ 454 (1056)
T 1lsh_A 375 ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKE 454 (1056)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCCh
Confidence 4444444333333443 5555555532222346778999999999996554 222 3478888888888888888
Q ss_pred hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHcc------CCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 007670 97 ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFT------EQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (594)
Q Consensus 97 ~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~------eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~kl 170 (594)
.-+..++.|||.+...- .+++|...|-+ +....++..|..||.++... +-..+-+-++.+
T Consensus 455 ~~~~~~LkaLGN~g~p~-------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~-------~p~~v~~il~~i 520 (1056)
T 1lsh_A 455 EEIVLALKALGNAGQPN-------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR-------DPRKVQEIVLPI 520 (1056)
T ss_dssp HHHHHHHHHHHHHTCGG-------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCChh-------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh-------chHHHHHHHHHH
Confidence 88999999999998754 34444444422 11345777888888877642 222344456777
Q ss_pred h--cCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcC-CcHHHHHHHHHHHHHHHHHcCCccchhh
Q 007670 171 L--KSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSS-QDWAARKAAAEALWRLAVVEKDAVPEFK 241 (594)
Q Consensus 171 L--~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~s-eDw~lRKaAaDaLg~IA~a~gd~f~py~ 241 (594)
+ ...+..++.+++..+= .. -|- ...+..|..+|.. .+.+++....-.|-.||..-...+...+
T Consensus 521 ~~n~~e~~EvRiaA~~~Lm---~t----~P~-~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~~~~la 586 (1056)
T 1lsh_A 521 FLNVAIKSELRIRSCIVFF---ES----KPS-VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEFRDVA 586 (1056)
T ss_dssp HHCTTSCHHHHHHHHHHHH---HT----CCC-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHHHH
T ss_pred hcCCCCChHHHHHHHHHHH---HH----CcC-HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 7 3447777777554432 11 133 2567778888765 5899999999998888876544444443
No 111
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.00 E-value=0.033 Score=55.58 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=33.4
Q ss_pred hhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHH
Q 007670 48 ILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTV 106 (594)
Q Consensus 48 L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~AL 106 (594)
|.....++++.+|..+...|+ + +.+.+.++|+|..||.+++..+
T Consensus 79 l~~L~~D~~~~VR~~aA~~L~---------~------~~L~~ll~D~d~~VR~~aA~~l 122 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRLP---------R------EQLSALMFDEDREVRITVADRL 122 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTSC---------S------GGGGGTTTCSCHHHHHHHHHHS
T ss_pred HHHHccCcCHHHHHHHHHHCC---------H------HHHHHHHcCCCHHHHHHHHHhC
Confidence 444456789999999886532 1 3577889999999999988853
No 112
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=92.20 E-value=3.1 Score=48.12 Aligned_cols=225 Identities=12% Similarity=0.120 Sum_probs=140.6
Q ss_pred ChhHHHHHHHHHHHHHhhcCC---CC-hHHHHHhhhhcCCC--CCCcch-HHHHHHHHHHHhhh----ccccchHHHHHH
Q 007670 18 DRDTYSQAAKELDSIAATVDP---TL-LPTFLSCILSTNSS--DKPGVR-KECIHVIATLSNSH----NLSPYITKIINS 86 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lpp---e~-lp~fLs~L~e~~ss--~kp~~R-KaaI~lLGvlae~h----~isphLpkIL~~ 86 (594)
|.+....+...|..||. |.| +. +|.+|.-+++++.+ -..++| .+++++|..+|..- ...+||..||..
T Consensus 352 ~~~~~~~~~~~l~~La~-l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l 430 (799)
T 1vsy_4 352 NPDIANYYISCFAYLLE-LDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSM 430 (799)
T ss_dssp SHHHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHh-cCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 55566788888888886 455 66 99999999999887 444554 56788888876555 335799999999
Q ss_pred HHhhhcCCChhHHHHHHHHHHhhchhhhc-------c-------------------------------------------
Q 007670 87 ITRNFRDKNSALQATCISTVSSLSPRVGA-------S------------------------------------------- 116 (594)
Q Consensus 87 IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~-------~------------------------------------------- 116 (594)
.+-++-=.|+.--.++...+..++.++.= .
T Consensus 431 ~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT 510 (799)
T 1vsy_4 431 LVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKAST 510 (799)
T ss_dssp HHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHT
T ss_pred HhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHH
Confidence 99999778876555666666555543320 0
Q ss_pred -hhHH----hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchh-hHHHHHHH----H
Q 007670 117 -AFVT----MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFK-AKAAGLVV----V 186 (594)
Q Consensus 117 -~~~~----~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fk-aK~alL~a----I 186 (594)
.+.. |+.=+|..+-+..+..+-.+-..++..+++.+.+ +.+...+.++.+...+..+. +..++-.. +
T Consensus 511 ~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~~n~~~~a~~~v~~L~~~~~ 587 (799)
T 1vsy_4 511 TVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFWSNDSFKEKDPNYELVTIPL 587 (799)
T ss_dssp STHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHHSCSCCCSSSCCTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 0111 3333333332223444444555556666666665 56777788888877666433 32333333 5
Q ss_pred HHHHhcCcCcCCchHHHHHHHHhh----hcC-------------Cc----HHHHHHHHHHHHHHHHHcCCccchhhhHHH
Q 007670 187 GSVIGSGAVDGSGLKGLVSCLLGF----LSS-------------QD----WAARKAAAEALWRLAVVEKDAVPEFKGKCL 245 (594)
Q Consensus 187 GSiA~a~~~~~pyf~~lm~~L~e~----L~s-------------eD----w~lRKaAaDaLg~IA~a~gd~f~py~~~~m 245 (594)
++++.+..+. |..++|.|..- +.+ .| |. +-.|+.+....|..+-+|.++++
T Consensus 588 ~a~~~~~P~~---~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~-----l~iL~~~v~~~g~~lL~y~deL~ 659 (799)
T 1vsy_4 588 AALVRRNNGL---SKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLY-----LTALNDVLRNCHESLLEYSDELI 659 (799)
T ss_dssp HHHHHHCGGG---HHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHH-----HHHHHHHHTTTGGGGGTTHHHHH
T ss_pred HHHHHhCHHH---HHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHH-----HHHHHHHHhcCcHHHHccHHHHH
Confidence 6666665442 44444444322 211 11 55 45666666677888999999999
Q ss_pred HHHHhcchhH
Q 007670 246 KIFESKRFDK 255 (594)
Q Consensus 246 ~sLEs~RfDK 255 (594)
.++.-+ ++|
T Consensus 660 ~il~~~-~~~ 668 (799)
T 1vsy_4 660 TFMKYL-YDN 668 (799)
T ss_dssp HHHHHH-HHS
T ss_pred HHHHHH-HHH
Confidence 888866 544
No 113
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=91.48 E-value=0.91 Score=44.13 Aligned_cols=140 Identities=15% Similarity=0.206 Sum_probs=85.4
Q ss_pred HHHHHHHhhcCCCC-hHHHHHhhhhcC-CCCCCcchHHHHH-HHHH-HHhhh-ccccchHHHHHHHHhhhcC---CChhH
Q 007670 27 KELDSIAATVDPTL-LPTFLSCILSTN-SSDKPGVRKECIH-VIAT-LSNSH-NLSPYITKIINSITRNFRD---KNSAL 98 (594)
Q Consensus 27 ~eLD~LA~~Lppe~-lp~fLs~L~e~~-ss~kp~~RKaaI~-lLGv-lae~h-~isphLpkIL~~IvrrLkD---~Ds~V 98 (594)
..|..+..+--=++ +|.|+..|.+.. .+.+....-..++ ..-. +..-+ ++.|||..++|.|..-+=. ....+
T Consensus 27 ~aL~sL~~D~gL~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~L 106 (196)
T 4atg_A 27 IAIECLEKESGLQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDV 106 (196)
T ss_dssp HHHHHHHHCSSCTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHH
T ss_pred HHHHHHhcCCChhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 34555566544455 888888886653 2222222222222 2222 23444 9999999888877744311 11279
Q ss_pred HHHHHHHHHhhchhhhcc--hhHH-hHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhcCCC-cchhHHHHHHH
Q 007670 99 QATCISTVSSLSPRVGAS--AFVT-MLKLLSDALFTEQ-DTNAQVGAALCLAATIDAAQDP-DAGKLGRMEVR 166 (594)
Q Consensus 99 R~Ac~~ALG~LAe~l~~~--~~~~-~lkPL~eaL~~eq-~k~vQ~~Aa~ALaavvE~l~~~-i~~yL~~L~~R 166 (594)
|+-++..|+.++...... .... +++-|..+|++.. ....+-||..+|.++...+-.. +.|.++.+..+
T Consensus 107 Rd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 107 RKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRT 179 (196)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHH
Confidence 999999999999998652 2222 7788888887543 4555669999999987754333 23555555444
No 114
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=89.35 E-value=5.9 Score=38.43 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=72.8
Q ss_pred HhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCc---chhH-HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC
Q 007670 120 TMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPD---AGKL-GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV 195 (594)
Q Consensus 120 ~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i---~~yL-~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~ 195 (594)
.|+.=+.+++.+ ..... ||+.+=. ++.+ +||| ..+.+.+..-++ +...=..++..+.|+..=...
T Consensus 11 ~yf~~It~a~~~----~~r~~---aL~sL~~--D~gL~~LlPyf~~fI~~~v~~nl~--~l~~L~~lm~~~~ALl~N~~l 79 (196)
T 4atg_A 11 LYFDKILSMIKS----DMKDI---AIECLEK--ESGLQQLVPYFIQHISELILKSFK--EAEVLKTCIALYFSLIKNKHV 79 (196)
T ss_dssp HHHHHHHHHHTS----TTHHH---HHHHHHH--CSSCTTTHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHh----HHHHH---HHHHHhc--CCChhhhHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHcCCCC
Confidence 378888888865 22222 2333322 3333 4443 234444444443 444445567777777755555
Q ss_pred cC-CchHHHHHHHHhhhcC----CcHHHHHHHHHHHHHHHHHcCCccchhhhHHHHHH
Q 007670 196 DG-SGLKGLVSCLLGFLSS----QDWAARKAAAEALWRLAVVEKDAVPEFKGKCLKIF 248 (594)
Q Consensus 196 ~~-pyf~~lm~~L~e~L~s----eDw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~sL 248 (594)
+. ||+-++||.+..|+.. .+ .+|.-|+..|+.|+...|+........+++.|
T Consensus 80 ~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl 136 (196)
T 4atg_A 80 FIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTL 136 (196)
T ss_dssp CCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHHHHHHHHhCccCchHHHHHHHHH
Confidence 54 9999999999999853 23 89999999999999988754444444444433
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=85.98 E-value=18 Score=39.76 Aligned_cols=88 Identities=10% Similarity=0.111 Sum_probs=70.1
Q ss_pred ChhHHHHHHHHHHHHHhhcCCCC---hHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCC
Q 007670 18 DRDTYSQAAKELDSIAATVDPTL---LPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDK 94 (594)
Q Consensus 18 DrDT~r~A~~eLD~LA~~Lppe~---lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~ 94 (594)
+.-+-++|++-+-....+.|.-+ |..+++++. .++..+|+.||+.|..+|.. .|+++|.-++++.|+--
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcE----Ded~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtd 112 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCE----DEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTD 112 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHT----CSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHh----cccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhcc
Confidence 45588999999999999987433 666666555 46778999999999999987 78999999999999988
Q ss_pred ChhHHHHHHHHHHhhchhh
Q 007670 95 NSALQATCISTVSSLSPRV 113 (594)
Q Consensus 95 Ds~VR~Ac~~ALG~LAe~l 113 (594)
|+.-+.+.-.+|-.|-..-
T Consensus 113 d~~E~~~V~~sL~sllk~D 131 (507)
T 3u0r_A 113 DSAEFNLVNNALLSIFKMD 131 (507)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHhcC
Confidence 8887777777665554443
No 116
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=85.73 E-value=8 Score=43.82 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=100.6
Q ss_pred hHHHHHHHHhhhcCCCh-hHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCC-ChhHHHHHHHHHHHHHhhc---CC
Q 007670 80 ITKIINSITRNFRDKNS-ALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQ-DTNAQVGAALCLAATIDAA---QD 154 (594)
Q Consensus 80 LpkIL~~IvrrLkD~Ds-~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq-~k~vQ~~Aa~ALaavvE~l---~~ 154 (594)
-..-++.++.||+...- .=|++|+.+|-.|+..+.......-+++|+..|-.+. |...-.. +|+.++--. ++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~---~LetL~~l~~~~~~ 95 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGY---ALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHH---HHHHHHHHHCCC--
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHH---HHHHHHHHhCCCCc
Confidence 45677888889976543 3499999999999988743323337999999995432 3322222 344442211 11
Q ss_pred C------------cchhH-------HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcC-cCCc---hHHHHHHHHhhh
Q 007670 155 P------------DAGKL-------GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAV-DGSG---LKGLVSCLLGFL 211 (594)
Q Consensus 155 ~------------i~~yL-------~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~-~~py---f~~lm~~L~e~L 211 (594)
+ +.-.+ +.-++-|+.+|++.+|.+|-..+.++..+..+-.. ...+ .+..++.|.++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL 175 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL 175 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH
Confidence 0 00111 22456689999999999999999999988866433 2111 124689999999
Q ss_pred cCCcHHHHHHHHHHHHHHHH
Q 007670 212 SSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 212 ~seDw~lRKaAaDaLg~IA~ 231 (594)
.++--.+|..|+..|..|..
T Consensus 176 ~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 176 ADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp GCSSHHHHHHHHHHHHHHHT
T ss_pred hCchHHHHHHHHHHHHHHhc
Confidence 99889999999999998886
No 117
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=83.54 E-value=2.5 Score=50.00 Aligned_cols=107 Identities=12% Similarity=0.128 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhhc-CCChh---HHHHHHHHHHHHHhhc-CCCChHHHHHhhhhcCCCC------------CCcchHHHH
Q 007670 2 AHALKTSVNGLLNK-LSDRD---TYSQAAKELDSIAATV-DPTLLPTFLSCILSTNSSD------------KPGVRKECI 64 (594)
Q Consensus 2 ~~~Lk~rvl~~L~K-LsDrD---T~r~A~~eLD~LA~~L-ppe~lp~fLs~L~e~~ss~------------kp~~RKaaI 64 (594)
.++-+.+|+.++.+ |.|.. -+..|+..|=.|.... +...+..++..+.+-.... .-..|=+||
T Consensus 837 ~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aV 916 (997)
T 1vsy_5 837 TEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNV 916 (997)
T ss_dssp CTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHH
Confidence 34556788888888 68877 8899999999998876 5233444444444332110 014677899
Q ss_pred HHHHHHHhhh-ccc---cchHHHHHHHHhhhcCCChhHHHHHHHHHHhh
Q 007670 65 HVIATLSNSH-NLS---PYITKIINSITRNFRDKNSALQATCISTVSSL 109 (594)
Q Consensus 65 ~lLGvlae~h-~is---phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~L 109 (594)
+.||.++..+ +-. ++||++|..+.+...||++ |+.++-.|++-|
T Consensus 917 LgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseF 964 (997)
T 1vsy_5 917 LGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEF 964 (997)
T ss_dssp HHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHH
T ss_pred HHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHH
Confidence 9999999999 665 5999999999999999876 998988888765
No 118
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=82.16 E-value=30 Score=35.94 Aligned_cols=155 Identities=12% Similarity=0.212 Sum_probs=105.5
Q ss_pred hHHHHHhh-hhcCCCCCCcchH-HHHHHHHHHHhhh--ccccchHHHHHHHH----hhhcC---CChhHHHHHHHHHHhh
Q 007670 41 LPTFLSCI-LSTNSSDKPGVRK-ECIHVIATLSNSH--NLSPYITKIINSIT----RNFRD---KNSALQATCISTVSSL 109 (594)
Q Consensus 41 lp~fLs~L-~e~~ss~kp~~RK-aaI~lLGvlae~h--~isphLpkIL~~Iv----rrLkD---~Ds~VR~Ac~~ALG~L 109 (594)
+|+++..+ .||..+ -|..|. +.+.++++++.-. .+.|++|.|+..|. .-+++ .-|-.|.+=..=|.++
T Consensus 71 ippLl~~VL~DY~~~-vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai 149 (321)
T 1w9c_A 71 VPPLLDAVLIDYQRN-VPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAV 149 (321)
T ss_dssp HHHHHHHHHHHHHTS-CGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHH
Confidence 89999766 777553 566775 5566677776666 89999999998876 23332 2356676666666666
Q ss_pred chhhhcch--hH-HhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhcC--CCcc-----hhHHHHHHHHHHHhcCC--
Q 007670 110 SPRVGASA--FV-TMLKLLSDALF---TEQDTNAQVGAALCLAATIDAAQ--DPDA-----GKLGRMEVRLERLLKSE-- 174 (594)
Q Consensus 110 Ae~l~~~~--~~-~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l~--~~i~-----~yL~~L~~RL~klL~s~-- 174 (594)
..++-..- .. ..++-+++++. .+.++++...+..+|..++++.. +... .|+-.++..++..|...
T Consensus 150 ~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~~~~~~~~~Fy~~fy~~il~~if~VlTDs~H 229 (321)
T 1w9c_A 150 NSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDILQHIFSVVTDTSH 229 (321)
T ss_dssp HHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhCchh
Confidence 66653210 11 25666666664 67899999999999999999974 2222 35566777777777433
Q ss_pred --chhhHHHHHHHHHHHHhcCcCc
Q 007670 175 --VFKAKAAGLVVVGSVIGSGAVD 196 (594)
Q Consensus 175 --~fkaK~alL~aIGSiA~a~~~~ 196 (594)
+|+....+|.-+-.++..+...
T Consensus 230 k~gF~~q~~iL~~lf~~ve~~~i~ 253 (321)
T 1w9c_A 230 TAGLTMHASILAYMFNLVEEGKIS 253 (321)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCC
T ss_pred hccHHHHHHHHHHHHHHHHcCccc
Confidence 7888888888888877666543
No 119
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=80.92 E-value=14 Score=43.74 Aligned_cols=183 Identities=13% Similarity=0.073 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHH
Q 007670 25 AAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCIS 104 (594)
Q Consensus 25 A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ 104 (594)
.+-.|-.+.+.++.++|..++..+.+ ++.+|+--+-+|+.+... .-+.+|...++..+...-+ +..
T Consensus 312 ~f~~Lv~~lR~~~~e~L~~l~~~~~~-----~~~~r~~~lDal~~aGT~--------~a~~~i~~~i~~~~l~~~e-a~~ 377 (1056)
T 1lsh_A 312 KFLRLTAFLRNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMATS--------EALLFLKRTLASEQLTSAE-ATQ 377 (1056)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCSH--------HHHHHHHHHHHTTCSCHHH-HHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc-----cHHHHHHHHHHhHhcCCH--------HHHHHHHHHHHcCCCCHHH-HHH
Confidence 34445556666676666666666552 344565433333333111 1123333334444433333 334
Q ss_pred HHHhhchhhhcchhHHhHHHHHHHHc---cCCChhHHHHHHHHHHHHHhhc--C-CC-cchhHHHHHHHHHHHhcCCchh
Q 007670 105 TVSSLSPRVGASAFVTMLKLLSDALF---TEQDTNAQVGAALCLAATIDAA--Q-DP-DAGKLGRMEVRLERLLKSEVFK 177 (594)
Q Consensus 105 ALG~LAe~l~~~~~~~~lkPL~eaL~---~eq~k~vQ~~Aa~ALaavvE~l--~-~~-i~~yL~~L~~RL~klL~s~~fk 177 (594)
+|+.+. ++. .|...+++-+++-+. ..+++.+...|.+++..+|-.. . .. ..++++.+...|.+.++..+..
T Consensus 378 ~l~~~~-~~~-~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~ 455 (1056)
T 1lsh_A 378 IVASTL-SNQ-QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEE 455 (1056)
T ss_dssp HHHHHH-HTC-CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHH
T ss_pred HHHHhh-ccC-CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChH
Confidence 444322 332 232234443333332 1245666678899999998764 1 12 2467888888888888887777
Q ss_pred hHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhc-------CCcHHHHHHHHHHHHHHHHH
Q 007670 178 AKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLS-------SQDWAARKAAAEALWRLAVV 232 (594)
Q Consensus 178 aK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~-------seDw~lRKaAaDaLg~IA~a 232 (594)
-+...|-|||-+.+ +..++.|..||. +....+|.+|+.||..++..
T Consensus 456 ~~~~~LkaLGN~g~---------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 456 EIVLALKALGNAGQ---------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp HHHHHHHHHHHHTC---------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHhhccCC---------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence 77777878884322 234556666653 22467888898888888754
No 120
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=78.37 E-value=82 Score=38.56 Aligned_cols=210 Identities=11% Similarity=0.046 Sum_probs=116.4
Q ss_pred CCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhc--
Q 007670 38 PTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGA-- 115 (594)
Q Consensus 38 pe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~-- 115 (594)
.+.|+.+|+.......+.++.+|.-+.+++..+=..+ =..+=.+|+..++..+-...+.=-+++.+.|..|+....+
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l 473 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAM 473 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHH
Confidence 4459999988888888888888888888887775554 0112344444444433333333345688889888876543
Q ss_pred chhHHhHHHHHHHHccCCChhHHHHH---HHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 116 SAFVTMLKLLSDALFTEQDTNAQVGA---ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 116 ~~~~~~lkPL~eaL~~eq~k~vQ~~A---a~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
.++..+++.+++.|- .-+. .|+.- .+|-.++-+.... ....-..|.==+-|.|.++.++.| -+|.||++..+
T Consensus 474 ~~~a~~l~giLD~l~-~l~~-~QiRklf~iL~~laf~~~~~~-~~~i~ddl~ivIRKQLs~~~~~~K--riGIIGav~~v 548 (1323)
T 3s4w_B 474 RLNAAFVKGILDYLE-NMSP-QQIRKIFCILSTLAFSQQPGT-SNHIQDDMHLVIRKQLSSTVFKYK--LIGIIGAVTMA 548 (1323)
T ss_dssp HHTHHHHHGGGGGGG-GCCH-HHHHHHHHHHHHHHHHHCSSC-CCHHHHHHHHHHHHHHTCSSHHHH--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhc-CCCH-HHHHHHHHHHHHHHcCCCCCc-chhhHHhHHHHHHHHHhCCchhhh--hhhHHHHHHHH
Confidence 245569999999993 2222 33322 2222334333221 111223344456789999988877 45556655533
Q ss_pred ---CcCcCCchHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHcC---CccchhhhHHHHHHHhcchhHHHH
Q 007670 193 ---GAVDGSGLKGLVSCLLGFLSSQDWAARKAAAEALWRLAVVEK---DAVPEFKGKCLKIFESKRFDKMIE 258 (594)
Q Consensus 193 ---~~~~~pyf~~lm~~L~e~L~seDw~lRKaAaDaLg~IA~a~g---d~f~py~~~~m~sLEs~RfDK~i~ 258 (594)
++... -.....+ +...-++ ...+.|...|..+-...+ +...-|.+++-+++..+.+|..+.
T Consensus 549 ~~~~~~~~-~~~~s~~---~~~~l~~-~~~~q~~~Ll~lv~~s~~~sp~~~AL~YDELA~~i~~~~l~~~~~ 615 (1323)
T 3s4w_B 549 GIMAEDRS-VPSNSSQ---RSANVSS-EQRTQVTSLLQLVHSCTEHSPWASSLYYDEFANLIQERKLAPKTL 615 (1323)
T ss_dssp HHTTC--------------------C-HHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHhcc-ccCcccc---ccccCCH-HHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 22211 1111111 1111112 224456666655555443 567777888888888899998333
No 121
>3vh7_A Envelope glycoprotein GP160; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_C 3p7k_A
Probab=73.05 E-value=6.3 Score=31.26 Aligned_cols=49 Identities=27% Similarity=0.451 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH---HHHhccchhhhHHHhhhhhHHHHHHH
Q 007670 437 LSTIRNQLVQIEQQQSSLLDLLQ---RFIGRSESGMQSLETRVLGLELALDE 485 (594)
Q Consensus 437 l~~ir~QL~qiE~qQs~lldllQ---~Fmg~s~~~m~sLe~RV~gLE~alde 485 (594)
|.-|-..|.=|-+||.+|+..++ -.....-=|+..|+.||.++|.-+.+
T Consensus 4 ~~~~~~~lsGivqQq~nlLraieaqq~ll~~tv~GikqlqarvlA~EryLkd 55 (58)
T 3vh7_A 4 MADIGSEFSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKS 55 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccccccc
Confidence 45677788888999999888764 44445556899999999999987753
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=69.71 E-value=19 Score=32.55 Aligned_cols=71 Identities=10% Similarity=0.035 Sum_probs=52.8
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
.++-|-.-| ...++++|.-|..-|+.++.|.+......+ ...+..|.++++..+..+|.-++.+|-+-+.+
T Consensus 43 a~rai~Krl-~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~ 115 (140)
T 3ldz_A 43 CLRSIMRRV-NHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE 115 (140)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 334444445 568999999999999999999987653222 44667777888767888999999999887754
No 123
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=64.83 E-value=84 Score=31.96 Aligned_cols=59 Identities=7% Similarity=0.009 Sum_probs=41.4
Q ss_pred CCcchHHHHHHHHHHHhh---h-ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh
Q 007670 56 KPGVRKECIHVIATLSNS---H-NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG 114 (594)
Q Consensus 56 kp~~RKaaI~lLGvlae~---h-~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~ 114 (594)
.|+.+--++|+|..+-.. . .+..+...|+..+...+.+++..||-|+.-.+-.+|-+..
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~ 223 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFH 223 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 345566667777766332 2 4556788899999888888888899888866666666553
No 124
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=63.02 E-value=58 Score=34.52 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=76.0
Q ss_pred chHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHH-hHHHHHHHHccCCChhHHHHHHHHHHHHHhhc-----
Q 007670 79 YITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVT-MLKLLSDALFTEQDTNAQVGAALCLAATIDAA----- 152 (594)
Q Consensus 79 hLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~-~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l----- 152 (594)
.|+.+++.|+..-.|++..||+-+.+=++..+..- ..... .+..|...| .+.++.|...+..|.+.+...+
T Consensus 60 Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~--~el~~~~l~~L~~LL-~d~d~~V~K~~I~~~tslYpl~f~~i~ 136 (386)
T 3o2t_A 60 LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRD--IELLLKLIANLNMLL-RDENVNVVKKAILTMTQLYKVALQWMV 136 (386)
T ss_dssp GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777778999999998887776665422 22223 444444444 6788888887777777665332
Q ss_pred --CC-C-----cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHH
Q 007670 153 --QD-P-----DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVI 190 (594)
Q Consensus 153 --~~-~-----i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA 190 (594)
+. . .-+.+..+-.+++.++.+.+..+|..++=.+-.++
T Consensus 137 ~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 137 KSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp HC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 21 1 12456677788999999999999999888888877
No 125
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=61.65 E-value=82 Score=32.99 Aligned_cols=170 Identities=12% Similarity=0.079 Sum_probs=99.3
Q ss_pred CCCCCCcchHHHHHHHHHHHhhh---------ccccchHHHHHHHHhhhcCCChhH------HHHHHHHHHhhchhhhcc
Q 007670 52 NSSDKPGVRKECIHVIATLSNSH---------NLSPYITKIINSITRNFRDKNSAL------QATCISTVSSLSPRVGAS 116 (594)
Q Consensus 52 ~ss~kp~~RKaaI~lLGvlae~h---------~isphLpkIL~~IvrrLkD~Ds~V------R~Ac~~ALG~LAe~l~~~ 116 (594)
+..-+...||.+...|+.+.+-- ++..| |.|+-.++++-.+||... |+.+. --.+|.++...
T Consensus 87 l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~-peil~~L~~gYe~~diAl~~G~mLRecir--~e~la~~iL~~ 163 (341)
T 1upk_A 87 LQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ-QNILFMLLKGYESPEIALNCGIMLRECIR--HEPLAKIILWS 163 (341)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC-THHHHHHHHGGGSTTTHHHHHHHHHHHHT--SHHHHHHHHHS
T ss_pred cccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcC-HHHHHHHHHhhccchhHhHHHHHHHHHHH--hHHHHHHHhcc
Confidence 44567789999999999984421 44444 899999999999999643 33221 11122222111
Q ss_pred hhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcC---CCcchhH----HHHHHHHHHHhcCCchhhHHHHHHHHHHH
Q 007670 117 AFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQ---DPDAGKL----GRMEVRLERLLKSEVFKAKAAGLVVVGSV 189 (594)
Q Consensus 117 ~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~---~~i~~yL----~~L~~RL~klL~s~~fkaK~alL~aIGSi 189 (594)
+ .+-.+|+++ .-.+=.+. +-|++.+=|-+. ....+|| ......+.+||.+++|-+|...|-++|-+
T Consensus 164 ~---~f~~fF~yv-~~~~Fdia---sDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgel 236 (341)
T 1upk_A 164 E---QFYDFFRYV-EMSTFDIA---SDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGEL 236 (341)
T ss_dssp G---GGGHHHHHT-TCSSHHHH---HHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHh-cCCCchHH---HHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 1 334555665 23333333 344445544431 1123444 45777888999999999999999999987
Q ss_pred Hhc--CcCc-CCchH--HHHHHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 007670 190 IGS--GAVD-GSGLK--GLVSCLLGFLSSQDWAARKAAAEALWRLAV 231 (594)
Q Consensus 190 A~a--~~~~-~pyf~--~lm~~L~e~L~seDw~lRKaAaDaLg~IA~ 231 (594)
.-- .-.+ .-|+. .-+..+...|.+..-.+|-.|--..-....
T Consensus 237 Lldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 237 LLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 732 2121 12222 124445555666666666656655555443
No 126
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.61 E-value=35 Score=32.83 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=48.3
Q ss_pred HHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhc
Q 007670 123 KLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 123 kPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s-~~fkaK~alL~aIGSiA~a 192 (594)
+-|..-| ...++++|.-|..-|+.++.|.+......+ ...+..|.++++. .+..+|.-++..|-.-+.+
T Consensus 45 r~l~krl-~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 45 AAIKKKM-NSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 3333444 568999999999999999999876542221 2266667777653 4678888888888877754
No 127
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=60.85 E-value=51 Score=30.28 Aligned_cols=70 Identities=14% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcC------CchhhHHHHHHHHHHHHhc
Q 007670 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS------EVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 122 lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s------~~fkaK~alL~aIGSiA~a 192 (594)
++-|-.-| ...++++|.-|..-|+.++.|.++.....+ ...+..|.+++.. .+..+|.-++.+|-+-+.+
T Consensus 50 ~ral~krl-~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 50 TRLLAHKI-QSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 33333444 568999999999999999999997653222 3377888999863 4678888899999987754
No 128
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=57.38 E-value=56 Score=32.58 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=66.6
Q ss_pred HHHHHHHHhhcCCCcchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcCcCcCCchHHHHHHHHhhhcCCcHHHHHH
Q 007670 142 ALCLAATIDAAQDPDAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSGAVDGSGLKGLVSCLLGFLSSQDWAARKA 221 (594)
Q Consensus 142 a~ALaavvE~l~~~i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~~~~~pyf~~lm~~L~e~L~seDw~lRKa 221 (594)
...|..+-|-+-.....+|+.+++.++.+-..++..+|..+++.|.-+. ..-..+...+++.|...|.++|-.+-|.
T Consensus 33 l~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~---~~k~~l~~~~l~~L~~Ll~d~d~~V~K~ 109 (257)
T 3gs3_A 33 CELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVC---KVKVELLPHVINVVSMLLRDNSAQVIKR 109 (257)
T ss_dssp HHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4556666664433334689999999999887788889999999888655 2224678889999999999999999999
Q ss_pred HHHHHHHH
Q 007670 222 AAEALWRL 229 (594)
Q Consensus 222 AaDaLg~I 229 (594)
|+.+.+.|
T Consensus 110 ~I~~~~~i 117 (257)
T 3gs3_A 110 VIQACGSI 117 (257)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988777
No 129
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=56.99 E-value=1.9e+02 Score=30.20 Aligned_cols=172 Identities=15% Similarity=0.051 Sum_probs=107.1
Q ss_pred ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHh-hchhhhc-chhHH--hHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670 75 NLSPYITKIINSITRNFRDKNSALQATCISTVSS-LSPRVGA-SAFVT--MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (594)
Q Consensus 75 ~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~-LAe~l~~-~~~~~--~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE 150 (594)
++.+++.+-.-.|+..|+..+...+.-+++.|.+ |++...- ..|+. =+.-|+..+ .+.+.+.| +|+|.++.+
T Consensus 111 iLrtsps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi-~~~~gN~q---~Y~L~AL~~ 186 (339)
T 3dad_A 111 ILRTQLSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVG-AAADHNYQ---SYILRALGQ 186 (339)
T ss_dssp EEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHH-TTSCHHHH---HHHHHHHHH
T ss_pred EEecCcHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHH-HhcChHHH---HHHHHHHHH
Confidence 6678888999999999999888888888888888 5432210 12221 133344444 44577777 788888888
Q ss_pred hcCCCc-c-hhH--HHHHHHHHHHhcCCchhhHHHHHHHHHHHHhcC---------------cCc-CCchHHHHHHHHhh
Q 007670 151 AAQDPD-A-GKL--GRMEVRLERLLKSEVFKAKAAGLVVVGSVIGSG---------------AVD-GSGLKGLVSCLLGF 210 (594)
Q Consensus 151 ~l~~~i-~-~yL--~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a~---------------~~~-~pyf~~lm~~L~e~ 210 (594)
-+.... . ..+ +..+.+++.++++....+-..+|..+-.+.... .+. .+.+..+|..|++.
T Consensus 187 LM~~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~ 266 (339)
T 3dad_A 187 LMLFVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK 266 (339)
T ss_dssp HTTSHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT
T ss_pred HHhccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc
Confidence 777622 1 122 557788888888765554444455444443211 111 24556666666543
Q ss_pred hcCCcHHHHHHHHHHHHHHHHHcCC--ccchhhhHHHHHHHhcchhH
Q 007670 211 LSSQDWAARKAAAEALWRLAVVEKD--AVPEFKGKCLKIFESKRFDK 255 (594)
Q Consensus 211 L~seDw~lRKaAaDaLg~IA~a~gd--~f~py~~~~m~sLEs~RfDK 255 (594)
.+.|-++.--|+-.|-++-....+ .| .++...||...+++
T Consensus 267 -~~~D~elq~~amtLIN~lL~~apd~d~~----~di~d~Le~~gi~~ 308 (339)
T 3dad_A 267 -NGADPELLVYTVTLINKTLAALPDQDSF----YDVTDALEQQGMEA 308 (339)
T ss_dssp -TSCCHHHHHHHHHHHHHHHHHCSSHHHH----HHHHHHHHHTTHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHhcCCChhHH----HHHHHHHHHccHHH
Confidence 246777777777777766665442 23 46777888888877
No 130
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=56.56 E-value=21 Score=32.76 Aligned_cols=70 Identities=14% Similarity=0.047 Sum_probs=52.3
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcC------CchhhHHHHHHHHHHHHhc
Q 007670 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS------EVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 122 lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s------~~fkaK~alL~aIGSiA~a 192 (594)
++-|-.-| ...++++|.-|..-|+.++.|.++.....+ ...+.+|.+++.. .+..+|.-++.+|-+-+.+
T Consensus 40 ~rai~krl-~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 40 PWLLAHKI-QSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 33344444 678999999999999999999997663332 4588889999863 3667888888888876644
No 131
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=52.52 E-value=37 Score=31.50 Aligned_cols=71 Identities=10% Similarity=-0.006 Sum_probs=51.7
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhH-HHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKL-GRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL-~~L~~RL~klL~s-~~fkaK~alL~aIGSiA~a 192 (594)
.++-|-.-| ...++++|.-|..-|+.+|.|.+.... ++- ...+..|.++++. .+..+|.-++.+|-.-+.+
T Consensus 53 A~ral~krl-~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRV-NHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 334444445 568999999999999999999987653 222 3467778888865 3678888888888876654
No 132
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.61 E-value=26 Score=34.13 Aligned_cols=71 Identities=8% Similarity=0.129 Sum_probs=50.1
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHhcC-CchhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVRLERLLKS-EVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~RL~klL~s-~~fkaK~alL~aIGSiA~a 192 (594)
.++-|-.-| ...++++|.-|..-|+.++.|.++.....+ ...+..|.++++. .+..+|.-++.+|.+-+.+
T Consensus 46 a~ral~krl-~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 46 AVNSIKKKV-NDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 444444555 578999999999999999999987542211 2355666667654 3677888888888877654
No 133
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.78 E-value=79 Score=29.50 Aligned_cols=69 Identities=14% Similarity=0.031 Sum_probs=47.5
Q ss_pred HHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc-hhH-HHHHHHHHHHhcC------CchhhHHHHHHHHHHHHh
Q 007670 122 LKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA-GKL-GRMEVRLERLLKS------EVFKAKAAGLVVVGSVIG 191 (594)
Q Consensus 122 lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~-~yL-~~L~~RL~klL~s------~~fkaK~alL~aIGSiA~ 191 (594)
++-|..-| ...++++|.-|..-|+.++.|.+.... ++- ...+.+|.+++.. .+.++|.-++.+|-+-+.
T Consensus 52 ~ral~krl-~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 52 VRLLAHKI-QSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHH-TCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 33344444 568999999999999999999886543 221 3367778888852 245667777777776553
No 134
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=47.60 E-value=1.3e+02 Score=34.72 Aligned_cols=115 Identities=13% Similarity=0.011 Sum_probs=83.7
Q ss_pred cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhh---cchhHHhHHHHHHHHcc--CCChhHHHHHHHHHHHHHhhc
Q 007670 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVG---ASAFVTMLKLLSDALFT--EQDTNAQVGAALCLAATIDAA 152 (594)
Q Consensus 78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~---~~~~~~~lkPL~eaL~~--eq~k~vQ~~Aa~ALaavvE~l 152 (594)
-++.-|+|.+..++.--+..|..-+..++..||.--. +-....++.=+..+|-+ -.+++--.+|..||..++--+
T Consensus 335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l 414 (799)
T 1vsy_4 335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI 414 (799)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999987553 11112244445555533 245655568888898888776
Q ss_pred CCC--cchhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHhc
Q 007670 153 QDP--DAGKLGRMEVRLERLLKSEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 153 ~~~--i~~yL~~L~~RL~klL~s~~fkaK~alL~aIGSiA~a 192 (594)
-.. -..++..|+.-++.-++.+++.--.+.+..|.+++.-
T Consensus 415 v~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ 456 (799)
T 1vsy_4 415 VMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAF 456 (799)
T ss_dssp TTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHT
T ss_pred hcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHh
Confidence 432 2568888999999999988877666788899998863
No 135
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=44.25 E-value=2.7e+02 Score=31.52 Aligned_cols=130 Identities=8% Similarity=0.034 Sum_probs=78.1
Q ss_pred cCCCChHHHHHhhhhc-CC-CCCCcchHHHHHHHHHHHhhhccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 36 VDPTLLPTFLSCILST-NS-SDKPGVRKECIHVIATLSNSHNLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 36 Lppe~lp~fLs~L~e~-~s-s~kp~~RKaaI~lLGvlae~h~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
|+......|+..|... .. .-++.+.++-+..|+.||..+ ..||..++..+++.+.-+... ..-+-.+|..+...+
T Consensus 129 Ld~~~~~~LV~aIL~~~~W~~r~~~~v~~Y~~FL~~LvSa~--~~yl~~vl~mLV~~F~~~~~~-~~~~H~~L~~Il~lv 205 (649)
T 3tj1_A 129 IESSRGTFLIQSIINFEKWWELPPHTLSKYIYFIKILCSSI--PKWWQDVSMILVSCFILPIKQ-TVCHHDMLKYFLRMI 205 (649)
T ss_dssp GCSGGGHHHHHHHHTCTTGGGSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHhCCchhccCCHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhccCCCcc-cHHHHHHHHHHHHHc
Confidence 4433345555555543 11 122345677777788887655 458899999989888765432 112455666666655
Q ss_pred hcchhHHhHHHHHHHHc--cCCChhHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 007670 114 GASAFVTMLKLLSDALF--TEQDTNAQVGAALCLAATIDAAQDPDAGKLGRMEVRLERL 170 (594)
Q Consensus 114 ~~~~~~~~lkPL~eaL~--~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~~L~~RL~kl 170 (594)
+....+|.|++..-| ....+.++.+=...|=++++..+.--...|..+++|++++
T Consensus 206 --P~s~~~L~~iL~~~FP~~~~s~~~~~~Yv~NLLrl~~Y~PeL~~~Il~LIierliki 262 (649)
T 3tj1_A 206 --PSSMGFIDTYLAKFFPNKNDTRRKLVNYTSNLLKLRGYCSELGFQIWSLLIEKIISI 262 (649)
T ss_dssp --GGGHHHHHHHHHHTCCCTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHh
Confidence 222347777776665 2345566666666677777755533345777788887765
No 136
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=40.15 E-value=20 Score=34.91 Aligned_cols=70 Identities=6% Similarity=-0.032 Sum_probs=52.1
Q ss_pred HHHhhhhcCCCCCCcchHHHHHHHH-HHHhhh---ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhh
Q 007670 44 FLSCILSTNSSDKPGVRKECIHVIA-TLSNSH---NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRV 113 (594)
Q Consensus 44 fLs~L~e~~ss~kp~~RKaaI~lLG-vlae~h---~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l 113 (594)
....+.+...|++...|+.++...+ +++..+ +-..+++.++..+...+.|++--|+.|..++|..++..-
T Consensus 109 ~~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~ 182 (235)
T 1t06_A 109 AQDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISY 182 (235)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhC
Confidence 3455566677889999999998333 223222 234688899999999999999999999999997777654
No 137
>1qbz_A Protein (SIV GP41 ectodomain); HIV, membrane fusion, peptide inhibitor, coiled coil, SIV envelope glycoprotein GP41; 1.47A {Simian immunodeficiency virus} SCOP: h.3.2.1 PDB: 1qce_A 2ezo_A 2ezp_A 2ezq_A 2ezr_A 2ezs_A 2siv_B 2siv_A
Probab=37.48 E-value=52 Score=29.71 Aligned_cols=41 Identities=37% Similarity=0.490 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHHHH---HHHHhccchhhhHHHhhhhhHHHHHHH
Q 007670 445 VQIEQQQSSLLDLL---QRFIGRSESGMQSLETRVLGLELALDE 485 (594)
Q Consensus 445 ~qiE~qQs~lldll---Q~Fmg~s~~~m~sLe~RV~gLE~alde 485 (594)
.=|=.||.+|+..+ |-...-+.=|+..|..||..+|+-+.+
T Consensus 8 ~givqqq~nllraieaqq~ll~ltvwGikqLqaRvlA~Erylkd 51 (123)
T 1qbz_A 8 AGIVQQQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKD 51 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhcccccccc
Confidence 34566777777665 234445556999999999999998864
No 138
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=35.81 E-value=46 Score=36.41 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=47.5
Q ss_pred CChhHHHHHHHHHHhhchhhhcchhHH---hHHHHHHHHccCCChhHHHHHHHHHHHHHh
Q 007670 94 KNSALQATCISTVSSLSPRVGASAFVT---MLKLLSDALFTEQDTNAQVGAALCLAATID 150 (594)
Q Consensus 94 ~Ds~VR~Ac~~ALG~LAe~l~~~~~~~---~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE 150 (594)
.|+.+-..||.=+|.|+.++.+.-.+. =.|..+..|+++.|+.|+--|..|+.+++-
T Consensus 417 ~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 417 QEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred CCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 478899999999999999996543222 368899999999999999999999998763
No 139
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=34.99 E-value=47 Score=31.83 Aligned_cols=79 Identities=10% Similarity=-0.084 Sum_probs=53.8
Q ss_pred cchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcc
Q 007670 78 PYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDA 157 (594)
Q Consensus 78 phLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~ 157 (594)
.|-..+++.|.+=++|++.=+|+++..++ | .+ .+......+-++++.+.++.+--||.+.+-+|.-+.-.-++...
T Consensus 120 ~~~~~~~~~i~~W~~s~~~w~rR~ai~~~--l-~~-~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~ 195 (220)
T 2b6c_A 120 LHLTELPTIFALFYGAENFWNRRVALNLQ--L-ML-KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVE 195 (220)
T ss_dssp HSGGGHHHHHHHHTTCSSHHHHHHHHHTT--T-TC-GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HChHHHHHHHHHHHcCCCHHHHHHHHHHH--H-HH-HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 35556777888888888888888887633 4 33 33444456677888777888888888888888777664333333
Q ss_pred hhH
Q 007670 158 GKL 160 (594)
Q Consensus 158 ~yL 160 (594)
+||
T Consensus 196 ~fl 198 (220)
T 2b6c_A 196 ELM 198 (220)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 140
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=33.48 E-value=4.3e+02 Score=27.50 Aligned_cols=145 Identities=14% Similarity=0.091 Sum_probs=93.9
Q ss_pred HHHHHHHHhhcC--CChhHHHHHHHHHHHHHh-hc-------CCCChHHHHHhhhhcCCCCCCcchHHHHHHHHHHHhh-
Q 007670 5 LKTSVNGLLNKL--SDRDTYSQAAKELDSIAA-TV-------DPTLLPTFLSCILSTNSSDKPGVRKECIHVIATLSNS- 73 (594)
Q Consensus 5 Lk~rvl~~L~KL--sDrDT~r~A~~eLD~LA~-~L-------ppe~lp~fLs~L~e~~ss~kp~~RKaaI~lLGvlae~- 73 (594)
+-.++-.++.|| ++.+..|-|+-.|..+-+ .. ..+.+..++..+.+. +..+--+++++|+.|-+-
T Consensus 116 ps~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v 191 (339)
T 3dad_A 116 LSVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFV 191 (339)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhcc
Confidence 347888899999 567789999999998433 21 233466666666543 667899999999999543
Q ss_pred --h--ccccchHHHHHHHHhhhcCCChhHHHHHHHHHHhhchhhhcch-hH-H------------hHHHHHHHHc--cCC
Q 007670 74 --H--NLSPYITKIINSITRNFRDKNSALQATCISTVSSLSPRVGASA-FV-T------------MLKLLSDALF--TEQ 133 (594)
Q Consensus 74 --h--~isphLpkIL~~IvrrLkD~Ds~VR~Ac~~ALG~LAe~l~~~~-~~-~------------~lkPL~eaL~--~eq 133 (594)
- .++ | +..+.-|+..+...+..|-+.++.-|-.++++..... .. . .+..|+..|. +..
T Consensus 192 ~Gm~gvvs-~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~ 269 (339)
T 3dad_A 192 DGMLGVVA-H-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA 269 (339)
T ss_dssp HHHHHHHH-C-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred ccccchhC-C-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence 2 442 3 4444555555555667777777777777776663211 00 0 2557777773 235
Q ss_pred ChhHHHHHHHHHHHHHhhcCCC
Q 007670 134 DTNAQVGAALCLAATIDAAQDP 155 (594)
Q Consensus 134 ~k~vQ~~Aa~ALaavvE~l~~~ 155 (594)
+..+|.-|..=+-+++.++++.
T Consensus 270 D~elq~~amtLIN~lL~~apd~ 291 (339)
T 3dad_A 270 DPELLVYTVTLINKTLAALPDQ 291 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSH
T ss_pred CHHHHHHHHHHHHHHHhcCCCh
Confidence 7778877666677888887754
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=31.50 E-value=83 Score=28.83 Aligned_cols=72 Identities=10% Similarity=0.022 Sum_probs=49.7
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHH-HHHHhc---CCchhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVR-LERLLK---SEVFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~R-L~klL~---s~~fkaK~alL~aIGSiA~a 192 (594)
.++-|-.-|.+..++++|.-|..-|+.++.|.++.....+ ...+.+ |++++. .++..+|.-++.+|-+-+.+
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 3444444552347899999999999999999987653322 236677 677773 23557888888888876653
No 142
>2zfc_A HIV-1 GP41; peptide, viral protein; 1.50A {Synthetic}
Probab=30.96 E-value=61 Score=24.50 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=14.5
Q ss_pred hhhHHHhhhhhHHHHH
Q 007670 468 GMQSLETRVLGLELAL 483 (594)
Q Consensus 468 ~m~sLe~RV~gLE~al 483 (594)
|+..|..||..+|..+
T Consensus 33 Gikqlqarvla~eryl 48 (49)
T 2zfc_A 33 GVKQLQARVLALERYI 48 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHccchhhhhcccccc
Confidence 9999999999999864
No 143
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=25.48 E-value=1.3e+02 Score=27.71 Aligned_cols=72 Identities=8% Similarity=0.031 Sum_probs=48.9
Q ss_pred hHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhH--HHHHHH-HHHHhcCC---chhhHHHHHHHHHHHHhc
Q 007670 121 MLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKL--GRMEVR-LERLLKSE---VFKAKAAGLVVVGSVIGS 192 (594)
Q Consensus 121 ~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL--~~L~~R-L~klL~s~---~fkaK~alL~aIGSiA~a 192 (594)
.++-|-.-|....++++|.-|..-|++++.|.++.....+ ...+.. |.++++.+ +..+|.-++.+|-+-+.+
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4444445553235888898899999999999987653222 234554 66777532 346888899999987754
No 144
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.22 E-value=27 Score=28.79 Aligned_cols=29 Identities=24% Similarity=0.231 Sum_probs=20.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHHHhhhcCcc
Q 007670 469 MQSLETRVLGLELALDEISYDLAVSTGRM 497 (594)
Q Consensus 469 m~sLe~RV~gLE~aldeis~dla~ssgr~ 497 (594)
+..||.||..||..|.++.-+...+.|..
T Consensus 50 ~~~Le~rl~~le~~l~~~~~~~~~~~~~~ 78 (96)
T 1pyi_A 50 VFFLEDRLAVMMRVLKEYGVDPTKIRGNI 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCSSCS
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccCCCC
Confidence 45789999999999887755544444433
No 145
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=24.36 E-value=2.8e+02 Score=25.91 Aligned_cols=73 Identities=4% Similarity=-0.016 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHhhchhhhcc------h------hHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH
Q 007670 94 KNSALQATCISTVSSLSPRVGAS------A------FVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG 161 (594)
Q Consensus 94 ~Ds~VR~Ac~~ALG~LAe~l~~~------~------~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~ 161 (594)
|+.-||.|...|+-.++.+.... . ...-..||+..+. .++..|....++|..+|-. .+.+.+.++
T Consensus 49 s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ll~~~~--~~~~~q~~lL~ale~~~~~-~~~~~~~~~ 125 (182)
T 3jui_A 49 SLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYI--KRAADHLEALAAIEDFFLE-HEALGISMA 125 (182)
T ss_dssp CHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHHHHH-CGGGGGGHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHh-CchHHHHHH
Confidence 44567888888886665443211 1 1125678888876 3677899999999999842 333345555
Q ss_pred HHHHHHHH
Q 007670 162 RMEVRLER 169 (594)
Q Consensus 162 ~L~~RL~k 169 (594)
.++..|..
T Consensus 126 ~il~~LYd 133 (182)
T 3jui_A 126 KVLMAFYQ 133 (182)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 55555443
No 146
>3p30_A HIV-1 GP41; HIV, GP41, cluster 2, 6-helix bundle, immune system; 3.30A {Human immunodeficiency virus 1}
Probab=23.88 E-value=75 Score=27.45 Aligned_cols=38 Identities=34% Similarity=0.412 Sum_probs=24.7
Q ss_pred HHHHHHHhhHHHHHHH---HHHhccchhhhHHHhhhhhHHH
Q 007670 444 LVQIEQQQSSLLDLLQ---RFIGRSESGMQSLETRVLGLEL 481 (594)
Q Consensus 444 L~qiE~qQs~lldllQ---~Fmg~s~~~m~sLe~RV~gLE~ 481 (594)
|.=|-.||.+|+..+. -...-.-=|+..|..||..+|+
T Consensus 12 l~givqqq~nll~aieaqq~ll~ltvwGikqlqarvlA~er 52 (96)
T 3p30_A 12 LSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARVLSGGR 52 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 3567888888887653 4445556699999999999998
No 147
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.77 E-value=1.4e+02 Score=24.78 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=34.2
Q ss_pred HHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHH
Q 007670 447 IEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEI 486 (594)
Q Consensus 447 iE~qQs~lldllQ~Fmg~s~~~m~sLe~RV~gLE~aldei 486 (594)
|-..=.++-+.|.+|.-+..+-+..|+.|+.-||+.|+=+
T Consensus 25 in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iL 64 (75)
T 3p8c_E 25 ITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYI 64 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334467788899999999999999999999999999865
No 148
>1env_A HIV-1 envelope protein chimera consisting of A FR GCN4 zipper cloned N-terminal TO...; viral fusion, coat protein, viral protein; 2.60A {Saccharomyces cerevisiae} SCOP: h.3.2.1 PDB: 1fav_A*
Probab=23.39 E-value=1.1e+02 Score=27.51 Aligned_cols=41 Identities=34% Similarity=0.474 Sum_probs=30.4
Q ss_pred HHHHHHHhhHHHHHH--HHHH-hccchhhhHHHhhhhhHHHHHH
Q 007670 444 LVQIEQQQSSLLDLL--QRFI-GRSESGMQSLETRVLGLELALD 484 (594)
Q Consensus 444 L~qiE~qQs~lldll--Q~Fm-g~s~~~m~sLe~RV~gLE~ald 484 (594)
|.-|=.||.+|+... |-.| .-+-=|+..|..||.++|+-+.
T Consensus 36 lsGivqQQ~nLLraIeAQQhLLqLTVWGIKqLqARvlAvEryLk 79 (123)
T 1env_A 36 LSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLK 79 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhccc
Confidence 334778888888775 2333 4455699999999999999884
No 149
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.14 E-value=53 Score=25.30 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=15.0
Q ss_pred hhHHHhhhhhHHHHHHHHHHHH
Q 007670 469 MQSLETRVLGLELALDEISYDL 490 (594)
Q Consensus 469 m~sLe~RV~gLE~aldeis~dl 490 (594)
+..||.||..||..|+.+...|
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777765544
No 150
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=22.92 E-value=7e+02 Score=26.46 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=82.0
Q ss_pred hHHHHHHHHcc---CCChhHHHHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHhcCCchhhHHHHHHHH-----HHHHh
Q 007670 121 MLKLLSDALFT---EQDTNAQVGAALCLAATIDAAQDPD-AGKLGRMEVRLERLLKSEVFKAKAAGLVVV-----GSVIG 191 (594)
Q Consensus 121 ~lkPL~eaL~~---eq~k~vQ~~Aa~ALaavvE~l~~~i-~~yL~~L~~RL~klL~s~~fkaK~alL~aI-----GSiA~ 191 (594)
+..+++..|+. ..+..-|..-..=|..++|.+++.. ..+...|+.++.+++.+++|++-..++-.. -+++
T Consensus 248 L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li- 326 (403)
T 3fga_B 248 LTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLI- 326 (403)
T ss_dssp GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHH-
T ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHH-
Confidence 55566666652 2244444444455666666665433 456777889999999999999765555322 1111
Q ss_pred cCcCcCCchHHHHHHHHhhhc---CC--cHHHHHHHHHHHHHHHHHcCCccchhhhHHHH--HHHhcchhHHHHHHhhcC
Q 007670 192 SGAVDGSGLKGLVSCLLGFLS---SQ--DWAARKAAAEALWRLAVVEKDAVPEFKGKCLK--IFESKRFDKMIEAWKQVP 264 (594)
Q Consensus 192 a~~~~~pyf~~lm~~L~e~L~---se--Dw~lRKaAaDaLg~IA~a~gd~f~py~~~~m~--sLEs~RfDK~i~lWk~i~ 264 (594)
..+-..++|.+-+.|. .+ .-.+|+.|..+|..+-..-.+.|..-...... .-+.-+.-|=-+.|+.|.
T Consensus 327 -----~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~~~~ 401 (403)
T 3fga_B 327 -----SDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIE 401 (403)
T ss_dssp -----HTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred -----HHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1444556666666653 23 45679999999999888766676654333321 111222222567898875
No 151
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=22.02 E-value=3e+02 Score=27.04 Aligned_cols=61 Identities=13% Similarity=0.162 Sum_probs=32.8
Q ss_pred CCCCcchHHHHHHHHHHHh----hh-ccccc--hHHHHHHHHhhhcCC----ChhHHHHHHHHHHhhchhhh
Q 007670 54 SDKPGVRKECIHVIATLSN----SH-NLSPY--ITKIINSITRNFRDK----NSALQATCISTVSSLSPRVG 114 (594)
Q Consensus 54 s~kp~~RKaaI~lLGvlae----~h-~isph--LpkIL~~IvrrLkD~----Ds~VR~Ac~~ALG~LAe~l~ 114 (594)
+..+..+-=++|+|..+-. +. .+..+ ...++..|...+.|. ...+|-|+.-.+-.+|-+..
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~ 172 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVT 172 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHh
Confidence 3455677777777777732 22 34444 344444444444442 34566666655555555554
No 152
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=21.37 E-value=57 Score=31.46 Aligned_cols=133 Identities=14% Similarity=0.035 Sum_probs=82.5
Q ss_pred CChhHHHHHHHHHHHHHhhcCCCChHHHHHhhhhcCCCCCCcchH-HHHHHHHHHHhhhccccchHHHHHHHHhhhcCCC
Q 007670 17 SDRDTYSQAAKELDSIAATVDPTLLPTFLSCILSTNSSDKPGVRK-ECIHVIATLSNSHNLSPYITKIINSITRNFRDKN 95 (594)
Q Consensus 17 sDrDT~r~A~~eLD~LA~~Lppe~lp~fLs~L~e~~ss~kp~~RK-aaI~lLGvlae~h~isphLpkIL~~IvrrLkD~D 95 (594)
.-++-+-+|+..|......+.++.++.+-..|. + -++|.+=- -|..++|-+... |-..+++.|.+-+.|++
T Consensus 73 ~~~E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~-~--~~nWd~~D~~a~~~~g~~~~~-----~p~~~~~~l~~W~~s~~ 144 (232)
T 3jxy_A 73 PEREFQAAALDIMQKYKKHINETHIPFLEELIV-T--KSWWDSVDSIVPTFLGDIFLK-----HPELISAYIPKWIASDN 144 (232)
T ss_dssp SBHHHHHHHHHHHHHTGGGCCGGGHHHHHHHHT-S--SCCHHHHHHHTTTHHHHHHHH-----CGGGGGGTHHHHHHSSC
T ss_pred cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc-c--CCChHHHHHhhHHHHHHHHHH-----CHHHHHHHHHHHhcCCc
Confidence 445666777777776666677766665444333 3 23444322 223444443332 33346667788889999
Q ss_pred hhHHHHHHHHHHhhchhhhcchhHHhHHHHHHHHccCCChhHHHHHHHHHHHHHhhcCCCcchhHH
Q 007670 96 SALQATCISTVSSLSPRVGASAFVTMLKLLSDALFTEQDTNAQVGAALCLAATIDAAQDPDAGKLG 161 (594)
Q Consensus 96 s~VR~Ac~~ALG~LAe~l~~~~~~~~lkPL~eaL~~eq~k~vQ~~Aa~ALaavvE~l~~~i~~yL~ 161 (594)
.-+|+++...+ +.... ......+-++++.+.++.+--||.+.+-+|..+.-.-++...+||.
T Consensus 145 ~w~rR~ai~~~--l~~~~--~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~fl~ 206 (232)
T 3jxy_A 145 IWLQRAAILFQ--LKYKQ--KMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEYVQ 206 (232)
T ss_dssp HHHHHHHHHTT--TTCGG--GCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHH--HHHHh--CCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 98988887543 44332 2223355567777878999999999999999887754443344543
No 153
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.12 E-value=2.2e+02 Score=25.22 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=46.9
Q ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHhccchhhhHHHhhhhhHHHHHHHHHHH
Q 007670 436 DLSTIRNQLVQIEQQQSSLLDLLQRFIGRSESGMQSLETRVLGLELALDEISYD 489 (594)
Q Consensus 436 ~l~~ir~QL~qiE~qQs~lldllQ~Fmg~s~~~m~sLe~RV~gLE~aldeis~d 489 (594)
|.-.+|.-+.+-.+...+.++.||+=+..-...=..|-.+++-||.+=|++=|-
T Consensus 18 E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 18 EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 445567788888888889999999999999999999999999999999988653
No 154
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.26 E-value=63 Score=23.99 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=14.3
Q ss_pred hhHHHhhhhhHHHHHHHHHHH
Q 007670 469 MQSLETRVLGLELALDEISYD 489 (594)
Q Consensus 469 m~sLe~RV~gLE~aldeis~d 489 (594)
|..||.||..||.-..|+=.-
T Consensus 5 l~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788888887776665433
Done!