BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007671
(594 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WD2|A Chain A, Solution Structure Of The C-Terminal Ring From A Ring-Ibr-
Ring (Triad) Motif
Length = 60
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 293 WILANSKPCPRCKRPIEKNQGCMHMTC-TPPCKFEFCWLCLGQWSDHGERTGGFYACNRY 351
WI AN+K CP+C IEK+ GC HM C CK EFCW+CLG W HG +Y CNRY
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGS---AWYNCNRY 57
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWT-GYISTAINDGPG-CLMLRCPDP 192
EE+TC IC E ++A C H FC +C T Y S DG G C + R P P
Sbjct: 18 EEVTCPICLELLKEP--VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + DG GC RC
Sbjct: 29 CKICAENDKDVKI--EPCGHLMCTSCLTAWQES---DGQGCPFCRC 69
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 142 MTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPD 191
+ CGICFE Y + ++ C H +CS C ++S C+ + PD
Sbjct: 23 LRCGICFE-YFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPD 71
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 140 EEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCP 190
E + C IC E++ ++L CGH C C ++++IN +RCP
Sbjct: 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSING------VRCP 60
>pdb|1WIM|A Chain A, Solution Structure Of The Ring Finger Domain Of The Human
Ubcm4-Interacting Protein 4
Length = 94
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 144 CGICFENYPSDRLLA-AACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSC 194
C +C YP +++ A C FC+ C Y+ I +G + CPD +C
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLET-AISCPDAAC 58
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + DG GC RC
Sbjct: 341 CKICAENDKDVKI--EPCGHLMCTSCLTAWQES---DGQGCPFCRC 381
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 32.0 bits (71), Expect = 0.96, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTG 172
EE+TC IC E L+ CGH FC +C T
Sbjct: 18 EEVTCPICLELLTQP--LSLDCGHSFCQACLTA 48
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 30 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 70
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 139 GEEMTCGICFENYP----SDRLLAAA-CGHPFCSSCWTGYISTAINDGPGC 184
G ++C IC + Y + RL+ + CGH FCS C + A N P C
Sbjct: 1 GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTC 50
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 337 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 377
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 335 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 375
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 335 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 375
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRC 189
C IC EN ++ CGH C+SC T + + +G GC RC
Sbjct: 337 CKICAENDKDVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRC 377
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 144 CGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190
C IC E+ PS+ +A C H FC C T + I P C + + P
Sbjct: 8 CPICLED-PSNYSMALPCLHAFCYVCITRW----IRQNPTCPLCKVP 49
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 137 PDGEEMTCGICFENYP----SDRLLAAA-CGHPFCSSCWTGYISTAINDGPGC 184
P G ++C IC + Y + RL+ + CGH FCS C + A N P C
Sbjct: 7 PSGT-VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTC 57
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 28.9 bits (63), Expect = 7.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 142 MTCGICFENYP----SDRLLAAA-CGHPFCSSCWTGYISTAINDGPGC 184
++C IC + Y + RL+ + CGH FCS C + A N P C
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTC 54
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWT 171
EE+TC IC E L+ CGH C +C T
Sbjct: 11 EEVTCPICLELLTEP--LSLDCGHSLCRACIT 40
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 174 ISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKV 213
+S A G GCLML+ GA +G+ +I L+ + K+
Sbjct: 46 VSAAGEPGDGCLMLKDGVYLAGAGMGETVIKLIDGSDQKI 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,721,762
Number of Sequences: 62578
Number of extensions: 793049
Number of successful extensions: 1759
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1743
Number of HSP's gapped (non-prelim): 44
length of query: 594
length of database: 14,973,337
effective HSP length: 104
effective length of query: 490
effective length of database: 8,465,225
effective search space: 4147960250
effective search space used: 4147960250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)