Query 007671
Match_columns 594
No_of_seqs 488 out of 1761
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 07:36:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007671.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007671hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 3.3E-21 1.1E-25 149.2 0.9 57 293-353 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.6 8.9E-16 3E-20 130.6 5.4 88 139-227 3-93 (94)
3 2ct7_A Ring finger protein 31; 99.2 9E-13 3.1E-17 110.0 -2.8 76 209-288 4-84 (86)
4 4ap4_A E3 ubiquitin ligase RNF 99.2 3.3E-12 1.1E-16 114.8 0.5 114 139-311 5-126 (133)
5 2jmo_A Parkin; IBR, E3 ligase, 98.9 1.7E-11 5.8E-16 100.7 -3.9 67 206-276 2-75 (80)
6 3hcs_A TNF receptor-associated 98.8 2.6E-09 8.7E-14 100.5 3.0 83 137-244 14-96 (170)
7 3ztg_A E3 ubiquitin-protein li 98.6 1.9E-08 6.5E-13 84.5 4.2 50 138-198 10-60 (92)
8 2yu4_A E3 SUMO-protein ligase 98.6 2.3E-08 7.7E-13 84.7 4.4 57 139-200 5-63 (94)
9 1rmd_A RAG1; V(D)J recombinati 98.6 3E-08 1E-12 87.1 5.1 80 141-244 23-102 (116)
10 2ecv_A Tripartite motif-contai 98.6 3.2E-08 1.1E-12 81.3 4.9 57 138-201 16-72 (85)
11 2ecy_A TNF receptor-associated 98.6 4E-08 1.4E-12 77.2 4.9 52 138-201 12-63 (66)
12 1t1h_A Gspef-atpub14, armadill 98.6 2.6E-08 8.8E-13 81.0 3.8 66 139-216 6-72 (78)
13 3hct_A TNF receptor-associated 98.6 9.4E-08 3.2E-12 84.2 7.8 84 137-245 14-97 (118)
14 2ecw_A Tripartite motif-contai 98.6 7.5E-08 2.6E-12 79.1 6.6 56 139-201 17-72 (85)
15 2ct2_A Tripartite motif protei 98.5 5.4E-08 1.8E-12 80.8 4.9 61 138-206 12-74 (88)
16 2egp_A Tripartite motif-contai 98.5 1.8E-08 6E-13 82.0 1.9 57 139-201 10-66 (79)
17 3lrq_A E3 ubiquitin-protein li 98.5 4.6E-08 1.6E-12 83.7 4.2 66 141-218 22-89 (100)
18 1jm7_A BRCA1, breast cancer ty 98.5 8.1E-08 2.8E-12 83.5 5.6 69 141-219 21-90 (112)
19 2ysl_A Tripartite motif-contai 98.5 4.8E-08 1.6E-12 78.2 3.1 54 138-201 17-70 (73)
20 2d8t_A Dactylidin, ring finger 98.5 6.4E-08 2.2E-12 77.2 3.6 55 138-205 12-66 (71)
21 2ysj_A Tripartite motif-contai 98.5 1.4E-07 4.8E-12 73.2 5.5 45 138-190 17-61 (63)
22 3fl2_A E3 ubiquitin-protein li 98.5 5.3E-08 1.8E-12 86.6 3.2 49 140-200 51-99 (124)
23 3knv_A TNF receptor-associated 98.5 1.9E-08 6.4E-13 91.7 0.0 84 139-244 29-118 (141)
24 2kr4_A Ubiquitin conjugation f 98.5 9.7E-08 3.3E-12 79.2 4.1 50 139-201 12-61 (85)
25 1e4u_A Transcriptional repress 98.4 1.4E-07 4.9E-12 76.8 4.9 53 139-201 9-63 (78)
26 2djb_A Polycomb group ring fin 98.4 1.3E-07 4.3E-12 75.7 4.5 51 139-202 13-64 (72)
27 2yur_A Retinoblastoma-binding 98.4 1.8E-07 6.2E-12 75.2 5.2 50 138-198 12-62 (74)
28 2csy_A Zinc finger protein 183 98.4 2.2E-07 7.5E-12 76.0 5.8 49 138-199 12-60 (81)
29 2y43_A E3 ubiquitin-protein li 98.4 9.6E-08 3.3E-12 81.4 3.7 65 141-218 22-88 (99)
30 2ecj_A Tripartite motif-contai 98.4 2.1E-07 7.1E-12 70.8 4.9 44 139-190 13-56 (58)
31 3l11_A E3 ubiquitin-protein li 98.4 6.4E-08 2.2E-12 84.8 1.9 50 139-200 13-62 (115)
32 3ng2_A RNF4, snurf, ring finge 98.4 7.5E-08 2.6E-12 76.5 1.6 55 139-204 8-67 (71)
33 2c2l_A CHIP, carboxy terminus 98.4 2.7E-07 9.3E-12 93.0 6.2 52 138-201 205-256 (281)
34 1g25_A CDK-activating kinase a 98.4 9.5E-08 3.3E-12 74.8 1.5 55 141-205 3-60 (65)
35 2kre_A Ubiquitin conjugation f 98.4 1.2E-07 4.1E-12 81.1 2.2 50 139-201 27-76 (100)
36 4ayc_A E3 ubiquitin-protein li 98.3 1.5E-07 5.1E-12 85.4 2.9 46 141-199 53-98 (138)
37 2xeu_A Ring finger protein 4; 98.3 8.7E-08 3E-12 74.4 1.2 54 140-204 2-60 (64)
38 1z6u_A NP95-like ring finger p 98.3 1.8E-07 6.2E-12 86.1 3.3 49 141-201 78-126 (150)
39 2ea6_A Ring finger protein 4; 98.3 2.9E-07 1E-11 72.5 3.8 51 138-199 12-67 (69)
40 1wgm_A Ubiquitin conjugation f 98.3 3.5E-07 1.2E-11 77.9 4.2 50 139-201 20-70 (98)
41 2ecm_A Ring finger and CHY zin 98.3 4.8E-07 1.7E-11 68.0 4.0 49 140-199 4-54 (55)
42 2ckl_A Polycomb group ring fin 98.3 2.4E-07 8.1E-12 80.2 2.4 48 140-200 14-62 (108)
43 2kiz_A E3 ubiquitin-protein li 98.3 1E-06 3.4E-11 69.6 5.6 51 139-200 12-63 (69)
44 1jm7_B BARD1, BRCA1-associated 98.2 2.2E-07 7.5E-12 81.7 1.2 62 141-217 22-85 (117)
45 3htk_C E3 SUMO-protein ligase 98.2 5.1E-07 1.7E-11 89.3 2.6 53 140-201 180-233 (267)
46 1bor_A Transcription factor PM 98.2 4.4E-07 1.5E-11 68.9 1.6 45 139-199 4-48 (56)
47 2ect_A Ring finger protein 126 98.2 1.2E-06 4E-11 71.0 4.1 52 139-201 13-65 (78)
48 2f42_A STIP1 homology and U-bo 98.1 9.9E-07 3.4E-11 83.1 3.3 51 139-201 104-154 (179)
49 2l0b_A E3 ubiquitin-protein li 98.1 1.3E-06 4.5E-11 73.2 3.4 51 139-200 38-89 (91)
50 2ep4_A Ring finger protein 24; 98.1 3.2E-06 1.1E-10 67.7 5.3 50 139-199 13-63 (74)
51 1chc_A Equine herpes virus-1 r 98.1 2E-06 6.7E-11 67.7 3.7 46 141-199 5-51 (68)
52 1iym_A EL5; ring-H2 finger, ub 98.1 1.5E-06 5.2E-11 65.3 2.6 49 140-199 4-54 (55)
53 1x4j_A Ring finger protein 38; 98.0 2.1E-06 7.2E-11 69.0 2.9 51 139-200 21-72 (75)
54 1v87_A Deltex protein 2; ring- 98.0 4.1E-06 1.4E-10 73.0 4.5 53 141-199 25-93 (114)
55 2ckl_B Ubiquitin ligase protei 98.0 3.1E-06 1.1E-10 78.9 3.5 48 140-199 53-101 (165)
56 2ecn_A Ring finger protein 141 98.0 1.2E-06 4.1E-11 69.4 0.3 48 139-200 13-60 (70)
57 1nj3_A NPL4; NZF domain, rubre 97.8 7.6E-06 2.6E-10 54.2 2.4 28 567-594 3-30 (31)
58 2crc_A Ubiquitin conjugating e 97.8 1.5E-05 5.1E-10 59.0 3.5 27 568-594 8-34 (52)
59 4ic3_A E3 ubiquitin-protein li 97.8 7.3E-06 2.5E-10 65.8 1.8 43 141-200 24-67 (74)
60 2ecg_A Baculoviral IAP repeat- 97.7 1.5E-05 5.1E-10 64.1 2.9 43 141-200 25-68 (75)
61 2d9g_A YY1-associated factor 2 97.7 1.8E-05 6.2E-10 59.0 3.1 30 565-594 6-35 (53)
62 4ap4_A E3 ubiquitin ligase RNF 97.6 1.6E-05 5.4E-10 70.7 1.7 56 138-204 69-129 (133)
63 2ecl_A Ring-box protein 2; RNF 97.6 4.5E-05 1.5E-09 62.3 4.3 50 140-200 14-76 (81)
64 3a9j_C Mitogen-activated prote 97.6 2.5E-05 8.4E-10 52.9 1.8 27 568-594 6-32 (34)
65 2vje_A E3 ubiquitin-protein li 97.5 3.4E-05 1.1E-09 60.1 2.5 48 139-199 6-56 (64)
66 2y1n_A E3 ubiquitin-protein li 97.5 6.2E-05 2.1E-09 78.9 4.2 48 141-200 332-379 (389)
67 2vje_B MDM4 protein; proto-onc 97.4 5.5E-05 1.9E-09 58.7 2.5 47 140-199 6-55 (63)
68 2ea5_A Cell growth regulator w 97.4 0.00015 5E-09 57.2 5.0 45 139-200 13-58 (68)
69 2yho_A E3 ubiquitin-protein li 97.4 3.7E-05 1.2E-09 62.6 1.2 43 141-200 18-61 (79)
70 2d8s_A Cellular modulator of i 97.3 0.00033 1.1E-08 57.0 5.6 53 139-200 13-70 (80)
71 3dpl_R Ring-box protein 1; ubi 97.3 0.00017 5.9E-09 62.0 3.9 49 140-199 36-100 (106)
72 2ct7_A Ring finger protein 31; 97.2 0.00015 5E-09 60.0 2.4 48 299-352 26-74 (86)
73 3t6p_A Baculoviral IAP repeat- 96.9 0.00024 8.1E-09 73.9 1.1 43 140-199 294-337 (345)
74 2jmo_A Parkin; IBR, E3 ligase, 96.7 0.00068 2.3E-08 55.1 2.9 40 298-337 25-70 (80)
75 4a0k_B E3 ubiquitin-protein li 96.6 0.00043 1.5E-08 60.5 0.5 49 140-199 47-111 (117)
76 2bay_A PRE-mRNA splicing facto 96.5 0.0012 4.3E-08 50.6 2.8 49 141-202 3-52 (61)
77 3gj3_B Nuclear pore complex pr 96.5 0.00092 3.1E-08 44.5 1.5 28 567-594 4-31 (33)
78 3b08_B Ranbp-type and C3HC4-ty 96.3 0.0013 4.5E-08 50.5 1.8 27 568-594 6-32 (64)
79 3k1l_B Fancl; UBC, ring, RWD, 95.5 0.019 6.4E-07 58.8 6.4 112 66-201 247-374 (381)
80 2ct0_A Non-SMC element 1 homol 95.3 0.0099 3.4E-07 47.4 3.2 50 140-199 14-63 (74)
81 2ebq_A Nuclear pore complex pr 94.6 0.021 7.3E-07 41.1 2.9 27 567-593 8-34 (47)
82 3gj5_B Nuclear pore complex pr 94.5 0.014 4.9E-07 39.0 1.6 27 567-593 4-30 (34)
83 1v92_A NSFL1 cofactor P47; 3-h 94.1 0.08 2.7E-06 37.7 5.2 41 79-119 5-45 (46)
84 2jun_A Midline-1; B-BOX, TRIM, 93.3 0.0074 2.5E-07 50.9 -2.0 68 251-333 17-87 (101)
85 2ebr_A Nuclear pore complex pr 93.2 0.08 2.7E-06 38.1 3.6 27 567-593 8-34 (47)
86 2cs3_A Protein C14ORF4, MY039 92.9 0.19 6.4E-06 40.0 5.7 52 136-191 10-63 (93)
87 3vk6_A E3 ubiquitin-protein li 92.8 0.058 2E-06 45.1 2.9 45 143-198 3-47 (101)
88 2dal_A Protein KIAA0794; FAS a 92.8 0.19 6.5E-06 38.4 5.6 42 78-119 14-55 (62)
89 1vyx_A ORF K3, K3RING; zinc-bi 92.8 0.13 4.5E-06 39.0 4.6 49 140-199 5-58 (60)
90 2jun_A Midline-1; B-BOX, TRIM, 92.5 0.052 1.8E-06 45.5 2.3 34 140-174 2-37 (101)
91 2dam_A ETEA protein; KIAA0887, 88.7 0.81 2.8E-05 35.5 5.7 41 79-119 18-59 (67)
92 1wd2_A Ariadne-1 protein homol 88.2 0.2 6.9E-06 38.0 1.9 36 229-268 5-44 (60)
93 2dzl_A Protein FAM100B; UBA-li 88.0 0.76 2.6E-05 35.5 5.1 39 81-119 19-57 (66)
94 3gj7_B Nuclear pore complex pr 87.6 0.11 3.6E-06 43.7 0.0 27 568-594 7-33 (98)
95 3e21_A HFAF1, FAS-associated f 86.6 0.71 2.4E-05 32.8 3.8 38 79-116 5-43 (45)
96 3gj7_B Nuclear pore complex pr 86.1 0.25 8.7E-06 41.4 1.5 27 568-594 70-96 (98)
97 4ayc_A E3 ubiquitin-protein li 85.8 0.36 1.2E-05 42.8 2.5 43 232-309 55-98 (138)
98 1wj7_A Hypothetical protein (R 85.1 1.3 4.6E-05 37.2 5.5 40 79-118 39-78 (104)
99 2ebv_A Nuclear pore complex pr 85.1 1.9 6.6E-05 32.2 5.7 26 568-593 29-54 (57)
100 1g25_A CDK-activating kinase a 84.9 0.46 1.6E-05 36.0 2.4 32 255-311 24-56 (65)
101 2jrp_A Putative cytoplasmic pr 83.8 0.41 1.4E-05 38.5 1.7 50 299-351 3-57 (81)
102 2k1p_A Zinc finger RAN-binding 83.7 0.64 2.2E-05 30.7 2.3 25 570-594 6-30 (33)
103 3lrq_A E3 ubiquitin-protein li 83.5 0.28 9.6E-06 41.0 0.7 35 299-339 23-57 (100)
104 2di0_A Activating signal coint 82.8 2.8 9.6E-05 32.7 6.0 41 78-118 12-53 (71)
105 2jne_A Hypothetical protein YF 82.0 0.38 1.3E-05 39.7 0.9 50 299-351 33-87 (101)
106 2lk0_A RNA-binding protein 5; 80.8 0.58 2E-05 30.7 1.3 26 569-594 4-29 (32)
107 3nw0_A Non-structural maintena 80.7 0.81 2.8E-05 44.7 2.8 49 141-200 180-229 (238)
108 3vk6_A E3 ubiquitin-protein li 78.9 1.5 5.2E-05 36.6 3.5 48 231-312 2-51 (101)
109 1x4j_A Ring finger protein 38; 78.3 0.54 1.8E-05 36.7 0.6 36 252-313 38-75 (75)
110 2ysj_A Tripartite motif-contai 77.2 0.59 2E-05 35.1 0.5 33 299-338 21-53 (63)
111 1z96_A DNA-damage, UBA-domain 77.0 4.3 0.00015 27.4 4.9 35 80-115 5-39 (40)
112 2ckl_B Ubiquitin ligase protei 76.5 0.69 2.4E-05 42.2 0.8 34 299-338 55-88 (165)
113 1bor_A Transcription factor PM 75.7 1.6 5.4E-05 32.1 2.6 26 256-310 23-49 (56)
114 2ysl_A Tripartite motif-contai 75.1 1.2 3.9E-05 34.4 1.7 32 299-337 21-52 (73)
115 1fre_A Nuclear factor XNF7; zi 75.1 1.8 6.1E-05 29.7 2.5 27 299-333 4-30 (42)
116 3gj8_B Nuclear pore complex pr 74.5 1.1 3.9E-05 36.9 1.6 27 568-594 63-89 (92)
117 2ecy_A TNF receptor-associated 74.1 0.93 3.2E-05 34.4 0.9 32 299-337 16-47 (66)
118 3gj8_B Nuclear pore complex pr 74.0 0.66 2.3E-05 38.3 0.0 26 569-594 7-32 (92)
119 2djb_A Polycomb group ring fin 73.8 0.83 2.9E-05 35.3 0.6 34 299-338 16-49 (72)
120 2ckl_A Polycomb group ring fin 73.6 1.1 3.6E-05 37.8 1.2 35 299-339 16-50 (108)
121 2yrg_A Tripartite motif-contai 72.7 1.6 5.4E-05 32.7 1.9 27 299-333 15-41 (59)
122 1e4u_A Transcriptional repress 72.6 1.1 3.7E-05 35.7 1.0 35 299-336 12-46 (78)
123 1deq_A Fibrinogen (alpha chain 72.4 51 0.0018 33.8 13.4 34 431-468 158-191 (390)
124 2ecw_A Tripartite motif-contai 72.4 0.96 3.3E-05 35.8 0.6 45 299-350 20-64 (85)
125 2y43_A E3 ubiquitin-protein li 72.0 1.2 4.3E-05 36.7 1.3 35 299-339 23-57 (99)
126 2csv_A Tripartite motif protei 72.0 1.5 5E-05 34.2 1.6 31 299-339 19-49 (72)
127 1pft_A TFIIB, PFTFIIBN; N-term 71.7 2.5 8.6E-05 30.4 2.7 29 298-327 5-34 (50)
128 3bvo_A CO-chaperone protein HS 71.6 40 0.0014 31.8 12.0 16 509-524 191-206 (207)
129 1vq8_Z 50S ribosomal protein L 71.4 1.4 4.7E-05 35.7 1.3 36 298-337 27-62 (83)
130 2ect_A Ring finger protein 126 71.0 1.4 4.8E-05 34.5 1.3 29 256-310 35-64 (78)
131 3hct_A TNF receptor-associated 70.7 3.1 0.00011 35.5 3.6 27 230-265 18-44 (118)
132 2did_A Tripartite motif protei 70.7 1.9 6.5E-05 31.3 1.9 27 299-333 9-35 (53)
133 2jr6_A UPF0434 protein NMA0874 70.4 2.1 7.2E-05 33.2 2.1 29 298-327 8-36 (68)
134 3ghg_A Fibrinogen alpha chain; 70.0 24 0.00081 37.8 10.6 13 509-521 176-188 (562)
135 3l11_A E3 ubiquitin-protein li 69.9 2.2 7.5E-05 36.2 2.4 34 299-339 16-49 (115)
136 1t1h_A Gspef-atpub14, armadill 69.8 1.4 4.7E-05 34.5 1.0 33 299-338 9-41 (78)
137 3fl2_A E3 ubiquitin-protein li 69.7 1.2 4.2E-05 38.4 0.8 32 299-337 53-84 (124)
138 1deq_A Fibrinogen (alpha chain 69.5 27 0.00094 35.8 10.6 10 464-473 117-126 (390)
139 2yur_A Retinoblastoma-binding 69.5 1.3 4.5E-05 34.5 0.8 34 299-338 16-49 (74)
140 1jm7_A BRCA1, breast cancer ty 69.5 1.4 4.9E-05 37.0 1.1 34 299-339 22-55 (112)
141 2egp_A Tripartite motif-contai 69.4 1.9 6.4E-05 33.7 1.7 33 299-338 13-45 (79)
142 2ct2_A Tripartite motif protei 67.8 1.3 4.4E-05 35.5 0.4 38 299-339 16-53 (88)
143 1w7p_D VPS36P, YLR417W; ESCRT- 67.7 1.1 3.8E-05 49.0 0.0 22 571-592 181-202 (566)
144 3ddt_A E3 ubiquitin-protein li 67.4 2 6.7E-05 30.5 1.3 26 299-332 7-33 (48)
145 1iym_A EL5; ring-H2 finger, ub 66.7 3.4 0.00012 29.7 2.6 37 299-338 6-42 (55)
146 2kiz_A E3 ubiquitin-protein li 66.6 1.6 5.3E-05 33.3 0.7 37 299-339 15-51 (69)
147 3hcs_A TNF receptor-associated 66.0 4.1 0.00014 37.1 3.6 31 229-268 17-48 (170)
148 2ecm_A Ring finger and CHY zin 65.7 2 6.9E-05 30.9 1.1 37 299-338 6-42 (55)
149 2cr8_A MDM4 protein; ZF-ranbp 65.7 4.7 0.00016 29.1 2.9 28 567-594 8-35 (53)
150 2ecv_A Tripartite motif-contai 65.0 0.97 3.3E-05 35.7 -0.8 33 299-338 20-52 (85)
151 2l0b_A E3 ubiquitin-protein li 65.0 2.3 8E-05 34.5 1.5 29 255-309 59-88 (91)
152 1jm7_B BARD1, BRCA1-associated 64.6 2.9 0.0001 35.6 2.1 33 299-337 23-55 (117)
153 1chc_A Equine herpes virus-1 r 63.7 1.9 6.6E-05 32.6 0.7 34 299-338 6-39 (68)
154 2ecj_A Tripartite motif-contai 63.6 1.6 5.5E-05 31.8 0.2 32 299-337 16-47 (58)
155 2k4x_A 30S ribosomal protein S 63.5 2 7E-05 31.8 0.8 29 298-327 18-46 (55)
156 1n0z_A ZNF265; zinc finger, RN 63.5 7.8 0.00027 27.4 3.8 26 569-594 13-40 (45)
157 2yvr_A Transcription intermedi 63.4 2.6 8.8E-05 30.1 1.3 31 299-339 7-38 (50)
158 4ic3_A E3 ubiquitin-protein li 63.3 2.7 9.1E-05 32.8 1.5 25 256-310 41-67 (74)
159 2d8t_A Dactylidin, ring finger 62.9 1.8 6.3E-05 33.2 0.4 34 299-339 16-49 (71)
160 2d8v_A Zinc finger FYVE domain 62.8 3.7 0.00013 31.4 2.1 33 139-174 6-39 (67)
161 3j20_Y 30S ribosomal protein S 62.7 3.4 0.00011 30.0 1.8 29 298-327 19-47 (50)
162 2d8u_A Ubiquitin ligase TRIM63 62.3 3.4 0.00012 31.0 1.9 27 299-333 9-36 (64)
163 3ng2_A RNF4, snurf, ring finge 61.4 1.7 5.7E-05 33.2 -0.1 39 299-338 11-50 (71)
164 2egm_A Tripartite motif-contai 61.2 2.8 9.5E-05 31.1 1.2 27 299-333 19-45 (57)
165 2csy_A Zinc finger protein 183 61.1 2.1 7.2E-05 33.8 0.5 33 299-338 16-48 (81)
166 3bq3_A Defective in cullin ned 60.8 8.5 0.00029 38.1 4.9 43 78-120 14-56 (270)
167 1z6u_A NP95-like ring finger p 60.7 2.3 7.8E-05 38.3 0.7 34 299-339 79-112 (150)
168 1x4v_A Hypothetical protein LO 60.4 4.4 0.00015 30.9 2.1 33 230-269 12-47 (63)
169 2ea6_A Ring finger protein 4; 59.5 2.2 7.5E-05 32.2 0.3 39 299-338 16-55 (69)
170 1weo_A Cellulose synthase, cat 58.4 5.4 0.00018 32.4 2.4 58 231-315 17-75 (93)
171 3knv_A TNF receptor-associated 58.1 2.5 8.7E-05 37.5 0.6 33 299-338 32-64 (141)
172 2y1n_A E3 ubiquitin-protein li 57.8 11 0.00036 39.4 5.3 31 255-310 348-379 (389)
173 1v87_A Deltex protein 2; ring- 57.8 2.9 0.0001 35.2 0.9 37 256-313 60-97 (114)
174 3ztg_A E3 ubiquitin-protein li 57.0 2 6.7E-05 34.8 -0.4 33 299-337 14-46 (92)
175 2g3q_A Protein YBL047C; endocy 56.5 19 0.00066 24.7 4.9 36 81-117 6-41 (43)
176 2dja_A Midline-2; tripartite m 56.2 4.1 0.00014 32.5 1.5 27 299-333 19-46 (84)
177 2ecn_A Ring finger protein 141 56.1 2.7 9.3E-05 32.0 0.4 31 299-337 16-46 (70)
178 2xeu_A Ring finger protein 4; 55.8 2.3 7.9E-05 31.5 -0.1 39 299-338 4-43 (64)
179 1ify_A HHR23A, UV excision rep 55.6 24 0.00083 25.1 5.4 37 80-117 9-45 (49)
180 2jp7_A MRNA export factor MEX6 55.5 26 0.00088 26.0 5.6 41 77-117 4-44 (57)
181 2c2l_A CHIP, carboxy terminus 55.4 8.4 0.00029 37.5 3.9 28 229-265 207-234 (281)
182 1oai_A Nuclear RNA export fact 53.4 32 0.0011 25.7 5.9 39 78-116 6-44 (59)
183 1wfh_A Zinc finger (AN1-like) 53.0 6.9 0.00024 29.8 2.1 28 298-331 15-42 (64)
184 1vg5_A RSGI RUH-014, rhomboid 51.7 22 0.00075 27.8 4.9 35 82-117 32-66 (73)
185 1rmd_A RAG1; V(D)J recombinati 51.4 3.8 0.00013 34.7 0.6 33 299-338 24-56 (116)
186 2hf1_A Tetraacyldisaccharide-1 51.2 7.7 0.00026 30.0 2.2 28 299-327 9-36 (68)
187 2js4_A UPF0434 protein BB2007; 50.7 8.2 0.00028 30.0 2.3 28 299-327 9-36 (70)
188 2c6a_A Ubiquitin-protein ligas 50.4 7 0.00024 27.6 1.6 31 564-594 7-37 (46)
189 2ep4_A Ring finger protein 24; 50.4 4 0.00014 31.4 0.5 37 299-339 16-52 (74)
190 1wg2_A Zinc finger (AN1-like) 50.2 7.5 0.00026 29.6 1.9 28 298-331 15-42 (64)
191 3h0g_I DNA-directed RNA polyme 49.6 11 0.00037 32.2 3.1 29 298-327 4-36 (113)
192 2pk7_A Uncharacterized protein 49.4 9.2 0.00032 29.6 2.4 28 299-327 9-36 (69)
193 3qt1_I DNA-directed RNA polyme 48.1 9.1 0.00031 33.7 2.5 30 297-327 23-56 (133)
194 2dak_A Ubiquitin carboxyl-term 47.6 31 0.0011 25.9 5.2 37 82-119 12-48 (63)
195 1wfe_A Riken cDNA 2310008M20 p 46.7 8.4 0.00029 31.2 1.9 34 229-269 24-60 (86)
196 1wfl_A Zinc finger protein 216 45.9 9.1 0.00031 30.0 1.8 26 299-330 26-51 (74)
197 1odh_A MGCM1; transcription fa 45.9 16 0.00054 32.9 3.6 36 269-325 96-131 (174)
198 2jrp_A Putative cytoplasmic pr 44.6 7.9 0.00027 31.0 1.3 29 299-336 32-62 (81)
199 2jny_A Uncharacterized BCR; st 43.8 12 0.00041 28.8 2.2 28 299-327 11-38 (67)
200 2ecl_A Ring-box protein 2; RNF 43.8 7.8 0.00027 30.6 1.2 18 322-339 47-64 (81)
201 1veg_A NEDD8 ultimate buster-1 43.7 35 0.0012 27.4 5.0 36 83-119 33-68 (83)
202 1weo_A Cellulose synthase, cat 42.2 47 0.0016 26.9 5.5 50 139-198 14-68 (93)
203 1wff_A Riken cDNA 2810002D23 p 38.9 15 0.00051 29.7 2.1 28 298-330 25-52 (85)
204 1wji_A Tudor domain containing 38.6 48 0.0016 25.0 4.9 36 81-117 11-46 (63)
205 2yw8_A RUN and FYVE domain-con 38.0 13 0.00044 29.6 1.7 41 291-334 11-52 (82)
206 2knz_A Ubiquilin-4; cytoplasm, 37.9 64 0.0022 23.2 5.4 40 78-118 10-50 (53)
207 1wfp_A Zinc finger (AN1-like) 37.8 14 0.00046 29.0 1.7 27 298-330 25-51 (74)
208 3ghg_A Fibrinogen alpha chain; 37.6 1.6E+02 0.0056 31.4 10.3 30 455-485 130-159 (562)
209 1twf_I B12.6, DNA-directed RNA 37.6 12 0.00042 32.2 1.6 29 298-327 4-36 (122)
210 1wys_A Riken cDNA 2310008M20 p 37.3 23 0.0008 27.8 3.0 32 231-269 15-49 (75)
211 2jy5_A Ubiquilin-1; UBA, alter 37.1 47 0.0016 23.9 4.5 37 81-118 14-51 (52)
212 2yu4_A E3 SUMO-protein ligase 36.8 6.3 0.00022 32.2 -0.4 33 299-337 8-40 (94)
213 2f42_A STIP1 homology and U-bo 36.5 49 0.0017 30.5 5.6 29 228-265 104-132 (179)
214 1z60_A TFIIH basal transcripti 35.9 15 0.00051 27.6 1.6 34 232-272 17-52 (59)
215 3s84_A Apolipoprotein A-IV; fo 35.6 3.2E+02 0.011 26.6 18.3 27 457-483 155-181 (273)
216 3t6p_A Baculoviral IAP repeat- 34.7 24 0.00082 36.1 3.5 25 256-310 312-338 (345)
217 1twf_L ABC10-alpha, DNA-direct 34.0 16 0.00056 28.3 1.6 26 299-326 29-54 (70)
218 4a0k_B E3 ubiquitin-protein li 33.8 8.7 0.0003 33.0 0.0 26 312-339 75-100 (117)
219 1dl6_A Transcription factor II 32.1 29 0.001 25.7 2.7 25 299-324 12-37 (58)
220 1x4w_A Hypothetical protein FL 31.9 18 0.0006 27.9 1.4 28 298-330 15-44 (67)
221 3m7n_A Putative uncharacterize 31.8 21 0.00072 32.8 2.3 24 299-325 141-164 (179)
222 1m1j_A Fibrinogen alpha subuni 31.3 3.3E+02 0.011 28.6 11.2 96 391-528 52-147 (491)
223 1f5n_A Interferon-induced guan 31.0 2.3E+02 0.0078 31.0 10.8 70 454-528 513-582 (592)
224 1joc_A EEA1, early endosomal a 30.7 24 0.00082 30.5 2.3 40 292-334 62-102 (125)
225 1nfn_A Apolipoprotein E3; lipi 30.4 1.2E+02 0.0042 28.0 7.4 30 493-522 130-159 (191)
226 1ee8_A MUTM (FPG) protein; bet 30.4 20 0.00068 35.3 2.0 25 299-324 236-262 (266)
227 2xzf_A Formamidopyrimidine-DNA 30.4 18 0.0006 35.8 1.6 25 299-324 243-269 (271)
228 3u6p_A Formamidopyrimidine-DNA 29.6 18 0.00061 35.8 1.5 25 299-324 246-272 (273)
229 3h0g_I DNA-directed RNA polyme 29.4 32 0.0011 29.1 2.9 31 229-261 3-36 (113)
230 3dpl_R Ring-box protein 1; ubi 29.2 17 0.00057 30.5 1.0 18 322-339 72-89 (106)
231 3t7l_A Zinc finger FYVE domain 29.2 35 0.0012 27.6 2.9 37 137-173 16-54 (90)
232 1k82_A Formamidopyrimidine-DNA 29.0 19 0.00065 35.5 1.6 25 299-324 241-267 (268)
233 1wiv_A UBP14, ubiquitin-specif 29.0 91 0.0031 24.1 5.2 35 83-118 33-67 (73)
234 1y02_A CARP2, FYVE-ring finger 28.4 27 0.00091 30.1 2.2 33 299-334 20-52 (120)
235 1k3x_A Endonuclease VIII; hydr 28.4 19 0.00066 35.3 1.5 25 299-324 235-261 (262)
236 1twf_I B12.6, DNA-directed RNA 28.4 28 0.00096 29.9 2.3 31 229-261 3-36 (122)
237 2lem_A Apolipoprotein A-I; lip 28.3 1.9E+02 0.0066 27.0 8.6 68 459-526 68-137 (216)
238 4esj_A Type-2 restriction enzy 27.8 40 0.0014 32.4 3.5 36 290-327 27-66 (257)
239 2dah_A Ubiquilin-3; UBA domain 27.0 50 0.0017 24.1 3.1 37 81-118 11-48 (54)
240 1wr1_B Ubiquitin-like protein 26.9 1.2E+02 0.004 22.4 5.2 41 77-118 15-56 (58)
241 2dai_A Ubadc1, ubiquitin assoc 26.9 97 0.0033 24.7 5.1 36 82-118 32-67 (83)
242 1wfk_A Zinc finger, FYVE domai 26.8 31 0.001 27.9 2.2 33 299-334 10-42 (88)
243 3h0g_L DNA-directed RNA polyme 26.7 32 0.0011 26.1 2.1 27 299-327 22-48 (63)
244 1wii_A Hypothetical UPF0222 pr 26.3 27 0.00093 28.1 1.7 28 299-327 24-57 (85)
245 1joc_A EEA1, early endosomal a 25.7 55 0.0019 28.2 3.8 36 138-173 66-103 (125)
246 2dkl_A Trinucleotide repeat co 25.5 1.2E+02 0.0041 24.3 5.4 38 80-118 22-59 (85)
247 2a20_A Regulating synaptic mem 25.0 35 0.0012 25.4 1.9 36 299-337 10-45 (62)
248 1qxf_A GR2, 30S ribosomal prot 24.8 56 0.0019 24.9 3.1 30 231-263 8-38 (66)
249 3htk_C E3 SUMO-protein ligase 24.2 25 0.00087 34.5 1.4 33 299-337 182-214 (267)
250 3u5c_f 40S ribosomal protein S 24.1 39 0.0013 30.2 2.5 32 231-264 119-151 (152)
251 1gs9_A Apolipoprotein E, APOE4 23.7 4E+02 0.014 23.9 9.9 66 458-525 97-162 (165)
252 2ko5_A Ring finger protein Z; 23.7 28 0.00096 28.6 1.3 47 140-201 27-74 (99)
253 2yw8_A RUN and FYVE domain-con 23.3 53 0.0018 25.9 2.9 32 228-265 17-49 (82)
254 2cpw_A CBL-interacting protein 23.2 91 0.0031 23.4 4.1 35 82-117 22-57 (64)
255 2akl_A PHNA-like protein PA012 23.2 41 0.0014 29.2 2.3 29 297-327 26-54 (138)
256 1dvp_A HRS, hepatocyte growth 22.8 41 0.0014 31.9 2.6 33 299-334 162-194 (220)
257 3lqh_A Histone-lysine N-methyl 22.8 23 0.00079 32.8 0.8 74 142-218 3-83 (183)
258 1z2q_A LM5-1; membrane protein 22.8 70 0.0024 25.3 3.6 38 136-173 16-55 (84)
259 3qt1_I DNA-directed RNA polyme 22.5 45 0.0015 29.2 2.5 31 228-260 22-55 (133)
260 1nfn_A Apolipoprotein E3; lipi 22.2 1.4E+02 0.0046 27.7 6.0 30 498-527 150-179 (191)
261 1vfy_A Phosphatidylinositol-3- 21.9 46 0.0016 25.7 2.3 32 299-333 12-43 (73)
262 2bwb_A Ubiquitin-like protein 21.9 1.8E+02 0.0062 20.2 5.2 39 78-117 6-45 (46)
263 2kpi_A Uncharacterized protein 21.4 52 0.0018 24.2 2.3 27 299-327 11-38 (56)
264 3v2d_5 50S ribosomal protein L 21.1 38 0.0013 25.4 1.5 21 298-324 30-50 (60)
265 3zyq_A Hepatocyte growth facto 21.0 38 0.0013 32.3 1.9 33 299-334 165-197 (226)
266 3iz6_X 40S ribosomal protein S 20.8 65 0.0022 25.9 2.9 32 231-265 37-69 (86)
267 3j20_W 30S ribosomal protein S 20.7 76 0.0026 24.0 3.1 30 231-263 16-46 (63)
268 2xzm_6 RPS27E; ribosome, trans 20.5 72 0.0025 25.3 3.1 31 231-264 33-64 (81)
269 1y02_A CARP2, FYVE-ring finger 20.2 41 0.0014 28.9 1.7 38 137-174 15-54 (120)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.80 E-value=3.3e-21 Score=149.16 Aligned_cols=57 Identities=58% Similarity=1.443 Sum_probs=53.1
Q ss_pred HHHhcCCCCCCCCcceeecCCCCcccccCC--CcceeeeccccccccCCCCCCCcccCCchhh
Q 007671 293 WILANSKPCPRCKRPIEKNQGCMHMTCTPP--CKFEFCWLCLGQWSDHGERTGGFYACNRYET 353 (594)
Q Consensus 293 wi~~ntK~CPkC~~~IEK~~GCnhm~C~~~--C~~~FCw~C~~~~~~h~~~~g~~y~C~~~~~ 353 (594)
||.+++|+||+|+.+|||++|||||+|+ . |+++|||+|+++|..|+. .+|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~-~~~C~~~FCw~C~~~~~~~~~---~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCR-NQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCC-SSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEEC-CCCcCCEEeeCcCCCcccCCC---ccccCCCccc
Confidence 7888999999999999999999999998 7 999999999999999975 6899999963
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.58 E-value=8.9e-16 Score=130.63 Aligned_cols=88 Identities=20% Similarity=0.535 Sum_probs=75.7
Q ss_pred CCccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCc--cchhHHhhccChHHHHHH
Q 007671 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA--VGQDMIYLLSSDEDKVKY 215 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~--v~~~~i~~ll~~e~~eky 215 (594)
...++|+||++.++...++.+ +|||.||.+||..||..+|.+|. ..+++||.++|+.. +++..++++++++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 457899999999865555554 69999999999999999998764 24799998889999 999999999999999999
Q ss_pred HHHHHHHHhhcC
Q 007671 216 NRYFIRSYVEDN 227 (594)
Q Consensus 216 ~~~~~~~~v~~~ 227 (594)
.+++++.+++.+
T Consensus 82 ~~~~~~~~v~~~ 93 (94)
T 1wim_A 82 KKLQFERSGPSS 93 (94)
T ss_dssp HHHHHHSSCSSC
T ss_pred HHHHHHhhhccC
Confidence 999999887643
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.17 E-value=9e-13 Score=109.99 Aligned_cols=76 Identities=21% Similarity=0.577 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCeeeeecCCCCceeec-cCCccccccc-ccc---cCCCCchhHHHHHHh
Q 007671 209 DEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNV-KEA---HRPVDCDTVAKWVLK 283 (594)
Q Consensus 209 ~e~~eky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C-~~~---H~p~~C~~~~~~~~~ 283 (594)
++++++|.+++++.+|..++.++||| +|+.++.... ....|+| .|++.||+.| .+| |.|++|..+++|+.+
T Consensus 4 ~~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~ 79 (86)
T 2ct7_A 4 GSSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRM 79 (86)
T ss_dssp CCCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHh
Confidence 34577888999999999999999999 8999887653 3566899 7999999999 999 999999999999998
Q ss_pred hhhhH
Q 007671 284 NSAES 288 (594)
Q Consensus 284 ~~~~~ 288 (594)
+..++
T Consensus 80 n~~~~ 84 (86)
T 2ct7_A 80 NSGPS 84 (86)
T ss_dssp HTCSS
T ss_pred Ccccc
Confidence 76654
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=3.3e-12 Score=114.81 Aligned_cols=114 Identities=25% Similarity=0.670 Sum_probs=78.8
Q ss_pred CCccccccccccccCCCc-------ccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHhhccChHH
Q 007671 139 GEEMTCGICFENYPSDRL-------LAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDED 211 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~-------v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~ 211 (594)
.+.++|+||++.+ .++ +.++|||.||..||..|+.. ...|| .|+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~l~i--- 68 (133)
T 4ap4_A 5 SGTVSCPICMDGY--SEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHPIYI--- 68 (133)
T ss_dssp CCSCBCTTTCCBH--HHHHHTTCCEEEETTCCEEEHHHHHHHHTT---------CSBCT--TTCCBCTTTCEEECBC---
T ss_pred CCCCCCcccChhh--hCccccccCeEecCCCChhhHHHHHHHHHh---------CCCCC--CCCCcCcccccccccc---
Confidence 3578899999987 344 88999999999999999853 24899 7999886654433211
Q ss_pred HHHHHHHHHHHHhhcCCCcccCCCCCCCCeeeeecCCCCceeeccCCccccccc-ccccCCCCchhHHHHHHhhhhhHHh
Q 007671 212 KVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESEN 290 (594)
Q Consensus 212 ~eky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~ 290 (594)
+.....||. |...+..........+...||+.||..| ..|. ..
T Consensus 69 ---------------~~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~------------~~------- 112 (133)
T 4ap4_A 69 ---------------GSGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL------------KN------- 112 (133)
T ss_dssp ---------------SSSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHH------------HH-------
T ss_pred ---------------CCCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHHHH------------Hc-------
Confidence 233457874 7654432211122334559999999999 5542 11
Q ss_pred HHHHHhcCCCCCCCCcceeec
Q 007671 291 MNWILANSKPCPRCKRPIEKN 311 (594)
Q Consensus 291 ~~wi~~ntK~CPkC~~~IEK~ 311 (594)
.+.||.|+.+|.++
T Consensus 113 -------~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 113 -------ANTCPTCRKKINHK 126 (133)
T ss_dssp -------CSBCTTTCCBCCGG
T ss_pred -------CCCCCCCCCcCChh
Confidence 27999999999864
No 5
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=98.95 E-value=1.7e-11 Score=100.70 Aligned_cols=67 Identities=25% Similarity=0.555 Sum_probs=58.0
Q ss_pred ccChHHHHHHHHHHHHHHhhcCCCcccCCCCCCCCeeeeecCCCCceeec------cCCccccccc-ccccCCCCchh
Q 007671 206 LSSDEDKVKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDFVVGSGNYDVTC------RCSYSFCWNV-KEAHRPVDCDT 276 (594)
Q Consensus 206 ll~~e~~eky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~~~~~~~~~v~C------~C~~~fC~~C-~~~H~p~~C~~ 276 (594)
+|+++++++|.+++++++|..+. ++|||+|+|+.++.... ....|.| .|++.||+.| .+||. .+|..
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 45667889999999999998886 99999999999987753 4556899 6999999999 99999 99975
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.75 E-value=2.6e-09 Score=100.53 Aligned_cols=83 Identities=23% Similarity=0.493 Sum_probs=59.3
Q ss_pred CCCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHhhccChHHHHHHH
Q 007671 137 PDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYN 216 (594)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~eky~ 216 (594)
+....+.|+||++.+ .+|+.++|||.||..||..++... ..+|| .|+..+....+ .....++
T Consensus 14 ~~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~---~~~~~~~--- 75 (170)
T 3hcs_A 14 PLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQL---FPDNFAK--- 75 (170)
T ss_dssp CCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGC---EECHHHH---
T ss_pred CCCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC--------CCCCC--CCccCcchhhh---hhhHHHH---
Confidence 345689999999988 778899999999999999998753 24899 79998866432 2211111
Q ss_pred HHHHHHHhhcCCCcccCCCCCCCCeeee
Q 007671 217 RYFIRSYVEDNRKTKWCPAPGCDYAVDF 244 (594)
Q Consensus 217 ~~~~~~~v~~~~~~~~CP~p~C~~~i~~ 244 (594)
..+. .-.+.||+.+|+..+..
T Consensus 76 -----~~i~--~l~v~C~n~GC~~~~~~ 96 (170)
T 3hcs_A 76 -----REIL--SLMVKCPNEGCLHKMEL 96 (170)
T ss_dssp -----HHHH--TSEEECCSTTCCCEEEG
T ss_pred -----HHHh--hcccCCCCCCCCceecH
Confidence 1111 23578999999977654
No 7
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.62 E-value=1.9e-08 Score=84.47 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=42.2
Q ss_pred CCCccccccccccccCCCccccc-CCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCcc
Q 007671 138 DGEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~-CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v 198 (594)
....+.|+||++.+ .+|++++ |||.||..||..++... + ...|| .|+..+
T Consensus 10 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 60 (92)
T ss_dssp CCTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHC---T----TCCCT--TTCCSS
T ss_pred CCcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhc---C----CCcCc--CCCCcC
Confidence 34578999999988 7899999 99999999999998742 2 47899 799886
No 8
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.61 E-value=2.3e-08 Score=84.66 Aligned_cols=57 Identities=19% Similarity=0.431 Sum_probs=45.6
Q ss_pred CCccccccccccccCCCccccc-CCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCc-cch
Q 007671 139 GEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAA-VGQ 200 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~-CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~-v~~ 200 (594)
...+.|+||++.+ .+||.++ |||.||+.||..||...-..+ ....||..+|... +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~---~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRK---KKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTT---CCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcC---CCCCCCcCcCcccccCH
Confidence 3578999999998 8899996 999999999999998642111 1578998889876 543
No 9
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.60 E-value=3e-08 Score=87.13 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=57.5
Q ss_pred ccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHhhccChHHHHHHHHHHH
Q 007671 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYNRYFI 220 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~eky~~~~~ 220 (594)
.+.|+||++.+ .+++.++|||.||..|+..|+... ...|| .|+..+....+...+ ..+. +.
T Consensus 23 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~~~~~-~~l~----~~-- 83 (116)
T 1rmd_A 23 SISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM--------GSYCP--SCRYPCFPTDLESPV-KSFL----NI-- 83 (116)
T ss_dssp HTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCBCCC-HHHH----HH--
T ss_pred CCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC--------cCcCC--CCCCCCCHhhccccH-HHHH----HH--
Confidence 67899999988 788889999999999999998752 35799 799998765443221 1111 11
Q ss_pred HHHhhcCCCcccCCCCCCCCeeee
Q 007671 221 RSYVEDNRKTKWCPAPGCDYAVDF 244 (594)
Q Consensus 221 ~~~v~~~~~~~~CP~p~C~~~i~~ 244 (594)
+. ...++||+.+|+..+..
T Consensus 84 ---i~--~l~v~C~~~gC~~~~~~ 102 (116)
T 1rmd_A 84 ---LN--SLMVKCPAQDCNEEVSL 102 (116)
T ss_dssp ---HH--HCEEECCSTTCCCEEEH
T ss_pred ---HH--HhcCCCCCCCCcchhhH
Confidence 11 12458999999977654
No 10
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.60 E-value=3.2e-08 Score=81.35 Aligned_cols=57 Identities=33% Similarity=0.704 Sum_probs=47.0
Q ss_pred CCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
....+.|+||++.+ .+++.++|||.||..|+..|+..+...+. ...|| .|+..+...
T Consensus 16 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~ 72 (85)
T 2ecv_A 16 VKEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDKG---ESSCP--VCRISYQPE 72 (85)
T ss_dssp CCCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTTS---CCCCT--TTCCSSCSS
T ss_pred ccCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCCC---CCcCC--CCCCccCHH
Confidence 34578999999988 67888999999999999999988665443 68999 799988654
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=4e-08 Score=77.23 Aligned_cols=52 Identities=25% Similarity=0.632 Sum_probs=42.8
Q ss_pred CCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
....+.|+||++.+ .+++.++|||.||..|+..|+. .+ ...|| .|+..+...
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~----~~----~~~CP--~Cr~~~~~~ 63 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLS----SS----SPKCT--ACQESIVKD 63 (66)
T ss_dssp CCCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHT----TS----SCCCT--TTCCCCCTT
T ss_pred CCcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHH----hC----cCCCC--CCCcCCChh
Confidence 34578999999988 6788899999999999999985 11 46899 799887654
No 12
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.58 E-value=2.6e-08 Score=80.97 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=49.2
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh-HHhhccChHHHHHHH
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD-MIYLLSSDEDKVKYN 216 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~-~i~~ll~~e~~eky~ 216 (594)
...+.|+||++.+ .+|+.++|||.||..|+..|+.. + ...|| .|+..+... ++.+......++.|.
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~----~----~~~CP--~C~~~~~~~~l~~n~~l~~~i~~~~ 72 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA----G----HKTCP--KSQETLLHAGLTPNYVLKSLIALWC 72 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT----T----CCBCT--TTCCBCSSCCCEECTTTHHHHHHHH
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH----C----cCCCC--CCcCCCChhhCccCHHHHHHHHHHH
Confidence 4578999999988 78999999999999999999953 2 46899 799988643 233344444444443
No 13
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.58 E-value=9.4e-08 Score=84.23 Aligned_cols=84 Identities=23% Similarity=0.496 Sum_probs=60.2
Q ss_pred CCCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHhhccChHHHHHHH
Q 007671 137 PDGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVKYN 216 (594)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~eky~ 216 (594)
+....+.|+||++.+ .+++.++|||.||..||..|+... ...|| .|+..+....+ .....+
T Consensus 14 ~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~---~~~~~l---- 74 (118)
T 3hct_A 14 PLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQL---FPDNFA---- 74 (118)
T ss_dssp CCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGC---EECHHH----
T ss_pred CCCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC--------CCCCC--CCCCCcCHHhc---ccCHHH----
Confidence 345578999999988 778889999999999999998753 23899 79998876432 221111
Q ss_pred HHHHHHHhhcCCCcccCCCCCCCCeeeee
Q 007671 217 RYFIRSYVEDNRKTKWCPAPGCDYAVDFV 245 (594)
Q Consensus 217 ~~~~~~~v~~~~~~~~CP~p~C~~~i~~~ 245 (594)
+..+. .-.+.||+.+|...+.+.
T Consensus 75 ----~~~i~--~l~v~C~n~gC~~~~~~~ 97 (118)
T 3hct_A 75 ----KREIL--SLMVKCPNEGCLHKMELR 97 (118)
T ss_dssp ----HHHHH--TSEEECSSTTCCCEEEGG
T ss_pred ----HHHHc--cceeECCCCCCCCEEeeH
Confidence 11122 235799999999887654
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.58 E-value=7.5e-08 Score=79.13 Aligned_cols=56 Identities=32% Similarity=0.624 Sum_probs=46.2
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
...+.|+||++.+ .+++.++|||.||..|+..|+......+. ...|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTDG---KGNCP--VCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTTS---CBCCT--TTCCCCCTT
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCCC---CCCCC--CCCCcCCHH
Confidence 4578999999987 67888999999999999999987653332 68999 799988654
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=5.4e-08 Score=80.76 Aligned_cols=61 Identities=26% Similarity=0.633 Sum_probs=47.0
Q ss_pred CCCccccccccccccCCC--cccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHhhc
Q 007671 138 DGEEMTCGICFENYPSDR--LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYLL 206 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~--~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~l 206 (594)
....+.|+||++.+.... ++.++|||.||..|+..|+.... ....|| .|+..+....+..+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI------NGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS------SCBCCT--TTCCCBCCSSTTTS
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC------CCcCCC--CCCCcccchhHHHH
Confidence 345789999999984332 88899999999999999997641 157999 79998866544443
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.55 E-value=1.8e-08 Score=82.01 Aligned_cols=57 Identities=33% Similarity=0.657 Sum_probs=45.5
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
...++|+||++.+ .+++.++|||.||..|+..|+......+. ....|| .|+..+...
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~--~~~~CP--~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMG--GKSSCP--VCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCC--CCCCCS--SSCCCCCSS
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCC--CCCcCC--CCCCcCCHh
Confidence 4578999999998 67888999999999999999876443221 267899 799988654
No 17
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.53 E-value=4.6e-08 Score=83.69 Aligned_cols=66 Identities=20% Similarity=0.435 Sum_probs=49.4
Q ss_pred ccccccccccccCCCccc-ccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHhh-ccChHHHHHHHHH
Q 007671 141 EMTCGICFENYPSDRLLA-AACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL-LSSDEDKVKYNRY 218 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~-l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~-ll~~e~~eky~~~ 218 (594)
.+.|+||++.+ .+++. ++|||.||..||..|+... ...|| .|+..+....+.. ....++.+.+.++
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~l~~~~~~~~i~~~~~~l 89 (100)
T 3lrq_A 22 VFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ--------RAQCP--HCRAPLQLRELVNCRWAEEVTQQLDTL 89 (100)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCEECTTHHHHHHHHHHH
T ss_pred CCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC--------cCCCC--CCCCcCCHHHhHhhHHHHHHHHHHHHH
Confidence 67899999998 67888 9999999999999999753 26899 8999987654433 3333445544443
No 18
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.52 E-value=8.1e-08 Score=83.53 Aligned_cols=69 Identities=19% Similarity=0.457 Sum_probs=51.2
Q ss_pred ccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHh-hccChHHHHHHHHHH
Q 007671 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY-LLSSDEDKVKYNRYF 219 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~-~ll~~e~~eky~~~~ 219 (594)
.+.|+||++.+ .+++.++|||.||..|+..|+... .+ ...|| .|+..+....+. +.....+++.+.+.+
T Consensus 21 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~~----~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 21 ILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQK--KG----PSQCP--LCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSS--SS----SCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhC--CC----CCCCc--CCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 56799999987 778889999999999999998753 11 47899 799988765443 233345566665543
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=4.8e-08 Score=78.16 Aligned_cols=54 Identities=31% Similarity=0.727 Sum_probs=43.4
Q ss_pred CCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
....+.|+||++.+ .+++.++|||.||..|+..|+... + ....|| .|+..+...
T Consensus 17 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP--~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C---GFFKCP--LCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS---C---SCCCCS--SSCCCCCCC
T ss_pred CccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC---C---CCCCCC--CCCCcCCcc
Confidence 34578999999988 678889999999999999997521 1 257899 799887654
No 20
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=6.4e-08 Score=77.21 Aligned_cols=55 Identities=24% Similarity=0.503 Sum_probs=45.0
Q ss_pred CCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHhh
Q 007671 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ 205 (594)
....+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+....+..
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL---------GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC---------SSBCS--SSCCBCCHHHHSC
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC---------CCcCc--CcCchhCHhhccC
Confidence 44578999999987 77888999999999999998643 25899 8999987766543
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.4e-07 Score=73.24 Aligned_cols=45 Identities=33% Similarity=0.752 Sum_probs=37.1
Q ss_pred CCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccC
Q 007671 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP 190 (594)
....+.|+||++.+ .+++.++|||.||..|+..|+... + ...+||
T Consensus 17 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP 61 (63)
T 2ysj_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C---GFFKCP 61 (63)
T ss_dssp CCCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHC---S---SCCCCS
T ss_pred CccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcC---C---CCCcCc
Confidence 34578999999988 678889999999999999999752 1 146898
No 22
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.47 E-value=5.3e-08 Score=86.59 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=41.8
Q ss_pred CccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
..+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 51 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA----Q----VFSCP--ACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCT
T ss_pred cCCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH----C----cCCCC--CCCccCCC
Confidence 357899999998 78999999999999999999872 1 46899 89998865
No 23
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.47 E-value=1.9e-08 Score=91.69 Aligned_cols=84 Identities=26% Similarity=0.524 Sum_probs=57.1
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHh------hccChHHH
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY------LLSSDEDK 212 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~------~ll~~e~~ 212 (594)
...+.|+||++.+ .+++.++|||.||..||..++.. + ...|| .|+..+...... .++....+
T Consensus 29 ~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS----G----PQNCA--ACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG----S----CEECH--HHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred CcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc----C----CCCCC--CCCCcccccccccccchhhhcccHHH
Confidence 4578999999988 78899999999999999999852 2 36899 788765322211 22222211
Q ss_pred HHHHHHHHHHHhhcCCCcccCCCCCCCCeeee
Q 007671 213 VKYNRYFIRSYVEDNRKTKWCPAPGCDYAVDF 244 (594)
Q Consensus 213 eky~~~~~~~~v~~~~~~~~CP~p~C~~~i~~ 244 (594)
+..+. .-.++||+.+|...+..
T Consensus 97 --------~~~i~--~L~v~Cpn~GC~~~~~l 118 (141)
T 3knv_A 97 --------RREVE--SLPAVCPSDGCTWKGTL 118 (141)
T ss_dssp --------HHHHH--TSEEECCSTTCCCEEEH
T ss_pred --------HHHHc--ccccccCCCCCCCEeEH
Confidence 11121 23579999999977654
No 24
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.45 E-value=9.7e-08 Score=79.18 Aligned_cols=50 Identities=8% Similarity=-0.072 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
...+.|+||++.+ .+||.++|||.||+.||..||.. ...|| .|+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN---------SPTDP--FNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc---------CCCCC--CCcCCCChH
Confidence 4589999999998 89999999999999999999974 24799 799888654
No 25
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.45 E-value=1.4e-07 Score=76.79 Aligned_cols=53 Identities=25% Similarity=0.640 Sum_probs=41.7
Q ss_pred CCccccccccccccCCCccccc--CCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 139 GEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~--CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
...++|+||++.+...++..++ |||.||..||..+|.. + ..+|| .|+..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~----~~~CP--~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E----NGLCP--ACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S----CSBCT--TTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C----CCCCC--CCCCccCCC
Confidence 4578999999988655555555 9999999999998753 2 47899 899988654
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.3e-07 Score=75.68 Aligned_cols=51 Identities=29% Similarity=0.550 Sum_probs=41.9
Q ss_pred CCccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhH
Q 007671 139 GEEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~ 202 (594)
...+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+....
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYY---------SNRCP--KCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHH---------CSSCT--TTCCCCCSSC
T ss_pred CCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHc---------CCcCC--CcCcccCccc
Confidence 4578999999987 567776 99999999999999964 25799 7999886543
No 27
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.44 E-value=1.8e-07 Score=75.24 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=41.8
Q ss_pred CCCccccccccccccCCCccccc-CCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCcc
Q 007671 138 DGEEMTCGICFENYPSDRLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~-CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v 198 (594)
....+.|+||++.+ .+++.++ |||.||..|+..|+... + ...|| .|+..+
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 62 (74)
T 2yur_A 12 IPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 62 (74)
T ss_dssp SCGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS---S----SSCCS--SSCCSS
T ss_pred CCCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc---C----CCcCC--CCCCcC
Confidence 34578999999988 7888999 99999999999999753 1 46899 799864
No 28
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2.2e-07 Score=76.05 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=41.7
Q ss_pred CCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
....+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA---------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH---------CSBCS--SSCCBCC
T ss_pred CCCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC---------CCcCC--CcCcccc
Confidence 34578999999988 77888999999999999999864 35899 7999875
No 29
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.43 E-value=9.6e-08 Score=81.36 Aligned_cols=65 Identities=29% Similarity=0.587 Sum_probs=47.7
Q ss_pred ccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhH-HhhccChHHHHHHHHH
Q 007671 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM-IYLLSSDEDKVKYNRY 218 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~-i~~ll~~e~~eky~~~ 218 (594)
.+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+.... ..+....+++++|.+.
T Consensus 22 ~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~n~~l~~~i~~~~~~ 88 (99)
T 2y43_A 22 LLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSY---------KTQCP--TCCVTVTEPDLKNNRILDELVKSLNFA 88 (99)
T ss_dssp HTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTT---------CCBCT--TTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred CCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHC---------CCCCC--CCCCcCChhhCCcCHHHHHHHHHHHHH
Confidence 57899999988 668777 89999999999999863 35899 8999886532 2333334455555543
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=2.1e-07 Score=70.82 Aligned_cols=44 Identities=30% Similarity=0.762 Sum_probs=35.7
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccC
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCP 190 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP 190 (594)
...+.|+||++.+ .+++.++|||.||..|+..|+... + ....||
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP 56 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWEDL---E---RDFPCP 56 (58)
T ss_dssp CCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTSS---C---CSCCCS
T ss_pred ccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHhc---C---CCCCCC
Confidence 4578899999988 678889999999999999997531 1 146888
No 31
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.40 E-value=6.4e-08 Score=84.82 Aligned_cols=50 Identities=30% Similarity=0.738 Sum_probs=41.8
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
...+.|+||++.+ .+++.++|||.||..|+..++.. + ...|| .|+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK----A----SLCCP--FCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT----T----TSBCT--TTCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH----C----cCCCC--CCCcccCc
Confidence 4478999999988 78899999999999999988742 1 47899 89998864
No 32
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.38 E-value=7.5e-08 Score=76.54 Aligned_cols=55 Identities=25% Similarity=0.771 Sum_probs=42.5
Q ss_pred CCccccccccccccC-----CCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHh
Q 007671 139 GEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~-----~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 204 (594)
...+.|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 67 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYH 67 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCCCCSCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---------CCCCC--CCCCccChhhee
Confidence 457889999998732 12378899999999999999864 24899 799988765443
No 33
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.38 E-value=2.7e-07 Score=93.05 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=43.7
Q ss_pred CCCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 138 DGEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
....+.|+||++.+ .+||+++|||+||+.||..||... + ..|| .|+..++..
T Consensus 205 ~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~---~-----~~cP--~~~~~~~~~ 256 (281)
T 2c2l_A 205 IPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G-----HFNP--VTRSPLTQE 256 (281)
T ss_dssp CCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHT---C-----SSCT--TTCCCCCGG
T ss_pred CCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHC---C-----CCCc--CCCCCCchh
Confidence 45689999999998 899999999999999999999752 2 2399 799988654
No 34
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=9.5e-08 Score=74.77 Aligned_cols=55 Identities=27% Similarity=0.725 Sum_probs=40.9
Q ss_pred ccccccccc-cccCC--CcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHhh
Q 007671 141 EMTCGICFE-NYPSD--RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIYL 205 (594)
Q Consensus 141 ~~~C~IC~e-~~~~~--~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ 205 (594)
.++|+||++ .+... .++.++|||.||..|+..++.. + ..+|| .|+..+....+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~~ 60 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G----AGNCP--ECGTPLRKSNFRV 60 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T----SSSCT--TTCCCCSSCCCEE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C----CCcCC--CCCCcccccccee
Confidence 578999999 55321 1256899999999999999863 2 46899 7999887655443
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.35 E-value=1.2e-07 Score=81.14 Aligned_cols=50 Identities=8% Similarity=-0.069 Sum_probs=42.9
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
...+.|+||++.+ .+||.++|||.||+.||..||.. ...|| .|+..+...
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 76 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN---------SPTDP--FNRQTLTES 76 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS---------CSBCS--SSCCBCCTT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc---------CCCCC--CCCCCCChh
Confidence 4589999999998 89999999999999999999863 24799 799888653
No 36
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.35 E-value=1.5e-07 Score=85.36 Aligned_cols=46 Identities=30% Similarity=0.824 Sum_probs=39.2
Q ss_pred ccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
.++|+||++.+ .+|+.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR---------KIECP--ICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT---------CSBCT--TTCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHc---------CCcCC--CCCCcCC
Confidence 46799999988 78999999999999999998743 35799 7998874
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.35 E-value=8.7e-08 Score=74.37 Aligned_cols=54 Identities=26% Similarity=0.776 Sum_probs=41.8
Q ss_pred CccccccccccccC-----CCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHh
Q 007671 140 EEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (594)
Q Consensus 140 ~~~~C~IC~e~~~~-----~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 204 (594)
+.+.|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 60 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYH 60 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCTTTCEE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCC--CCCccCCcccee
Confidence 35789999998732 22377899999999999999865 24899 799988765443
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.34 E-value=1.8e-07 Score=86.08 Aligned_cols=49 Identities=24% Similarity=0.644 Sum_probs=42.2
Q ss_pred ccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
.+.|+||++.+ .+++.++|||.||..|+..++.. + ...|| .|+..+...
T Consensus 78 ~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA----Q----VFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCTT
T ss_pred CCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh----C----CCcCC--CCCccCCCC
Confidence 57899999988 78999999999999999999974 1 46899 799988654
No 39
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.32 E-value=2.9e-07 Score=72.49 Aligned_cols=51 Identities=27% Similarity=0.846 Sum_probs=39.8
Q ss_pred CCCccccccccccccC-----CCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
....+.|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..|.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKIN 67 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCT--TTCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCC--CCCCccC
Confidence 3457889999998732 12277899999999999999865 24799 7988775
No 40
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.31 E-value=3.5e-07 Score=77.89 Aligned_cols=50 Identities=10% Similarity=-0.087 Sum_probs=43.1
Q ss_pred CCccccccccccccCCCcccccCC-CcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 139 GEEMTCGICFENYPSDRLLAAACG-HPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~Cg-H~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
...+.|+||++.+ .+||.++|| |.||+.||..||.. ...|| .|+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP--~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS---------DQTDP--FNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT---------SCBCT--TTCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh---------CCCCC--CCCCCCChh
Confidence 4589999999998 899999999 99999999999864 24799 799888654
No 41
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.28 E-value=4.8e-07 Score=67.98 Aligned_cols=49 Identities=24% Similarity=0.656 Sum_probs=39.5
Q ss_pred CccccccccccccC--CCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPS--DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~--~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCP--LCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCT--TSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCC--CCCCcCC
Confidence 46789999998843 347788999999999999998753 5799 7987663
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.27 E-value=2.4e-07 Score=80.23 Aligned_cols=48 Identities=27% Similarity=0.681 Sum_probs=40.3
Q ss_pred CccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
..+.|+||++.+ .+++.+ +|||.||..|+..++.. ...|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET---------SKYCP--ICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS---------CSBCT--TTCCBSCS
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh---------CCcCc--CCCccccc
Confidence 468899999988 678887 99999999999999854 26899 79988753
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.26 E-value=1e-06 Score=69.62 Aligned_cols=51 Identities=24% Similarity=0.584 Sum_probs=40.5
Q ss_pred CCccccccccccccC-CCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 139 GEEMTCGICFENYPS-DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~-~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
.....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..|..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCP--ICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCT--TTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCc--CcCccccC
Confidence 446789999998754 456778999999999999998652 3599 79987753
No 44
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.23 E-value=2.2e-07 Score=81.74 Aligned_cols=62 Identities=21% Similarity=0.388 Sum_probs=45.5
Q ss_pred ccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhH-HhhccChHHHHHHHH
Q 007671 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM-IYLLSSDEDKVKYNR 217 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~-i~~ll~~e~~eky~~ 217 (594)
.+.|+||++.+ .+|+.+ +|||.||..|+..++. ..|| .|+..+.... ..+.....+++.+..
T Consensus 22 ~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP--~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 22 LLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG-----------TGCP--VCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp TTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT-----------TBCS--SSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc-----------CCCc--CCCCcCccccccccHHHHHHHHHHHH
Confidence 57899999988 788888 9999999999998863 5799 7999885432 222333344555544
No 45
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.18 E-value=5.1e-07 Score=89.27 Aligned_cols=53 Identities=26% Similarity=0.544 Sum_probs=44.2
Q ss_pred CccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
..+.||||++.+ .+||+. .|||.||+.||..||... + ...||..+|+..+...
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~---~----~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGY---T----TRDCPQAACSQVVSMR 233 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTC---S----CEECSGGGCSCEECGG
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhC---C----CCCCCcccccCcCchh
Confidence 478999999998 889875 999999999999998641 2 4789987899987543
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=4.4e-07 Score=68.92 Aligned_cols=45 Identities=24% Similarity=0.528 Sum_probs=37.4
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
...++|+||++.+ .+++.++|||.||..|+.. . ...|| .|+..+.
T Consensus 4 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~--------~----~~~CP--~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEA--KCPKLLPCLHTLCSGCLEA--------S----GMQCP--ICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSC--BCCSCSTTSCCSBTTTCSS--------S----SSSCS--SCCSSSS
T ss_pred ccCCCceEeCCcc--CCeEEcCCCCcccHHHHcc--------C----CCCCC--cCCcEee
Confidence 3468899999988 6789999999999999866 1 47899 7988764
No 47
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.16 E-value=1.2e-06 Score=71.00 Aligned_cols=52 Identities=25% Similarity=0.665 Sum_probs=40.7
Q ss_pred CCccccccccccccCC-CcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
.....|+||++.+... .++.++|||.||..|+..|+.. ...|| .|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---------HDSCP--VCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---------TCSCT--TTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---------CCcCc--CcCCccCCc
Confidence 4578899999988543 3456799999999999999853 24799 799887654
No 48
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.12 E-value=9.9e-07 Score=83.12 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=43.5
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
...+.||||++.+ .+||.++|||.||+.||..||... | . .|| .|+..+...
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~---~----~-tcP--~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G----H-FDP--VTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---C----S-BCT--TTCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhC---C----C-CCC--CCcCCCChh
Confidence 4689999999998 899999999999999999999752 2 2 699 799888654
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.11 E-value=1.3e-06 Score=73.19 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=40.3
Q ss_pred CCccccccccccccCC-CcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
.....|+||++.+... .++.++|||.||..|+..|+.. ...|| .|+..+++
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCc--CcCccCCC
Confidence 3467899999988543 3667899999999999999843 24799 79988764
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=3.2e-06 Score=67.68 Aligned_cols=50 Identities=24% Similarity=0.634 Sum_probs=39.1
Q ss_pred CCccccccccccccCC-CcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
.....|+||++.+... ..+.++|||.||..|+..|+... ..|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP--~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCP--LCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCT--TTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCC--CcCcccc
Confidence 4467899999998533 34456999999999999998652 3799 7998774
No 51
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.08 E-value=2e-06 Score=67.66 Aligned_cols=46 Identities=35% Similarity=0.759 Sum_probs=37.7
Q ss_pred ccccccccccccCCC-cccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 141 EMTCGICFENYPSDR-LLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~-~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
...|+||++.+ .+ ++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 5 ~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQ---------NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHH---------SCSTT--TTCCCCC
T ss_pred CCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhC---------cCcCc--CCChhhH
Confidence 56799999987 44 478899999999999999853 24799 7998775
No 52
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.06 E-value=1.5e-06 Score=65.27 Aligned_cols=49 Identities=22% Similarity=0.639 Sum_probs=37.6
Q ss_pred CccccccccccccCC-Cccccc-CCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPSD-RLLAAA-CGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~-~~v~l~-CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
....|+||++.+... .++.++ |||.||..|+..|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCc--CCCCEeE
Confidence 356899999998543 356676 9999999999999743 24799 7987653
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=2.1e-06 Score=68.99 Aligned_cols=51 Identities=27% Similarity=0.674 Sum_probs=40.1
Q ss_pred CCccccccccccccCC-CcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 139 GEEMTCGICFENYPSD-RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~-~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
.....|+||++.+... .++.++|||.||..|+..|+.. ...|| .|+..+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---------~~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---------NRTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH---------CSSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc---------CCcCc--CcCCcCCC
Confidence 3467899999998543 3467899999999999999864 24799 79987754
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.00 E-value=4.1e-06 Score=72.98 Aligned_cols=53 Identities=32% Similarity=0.628 Sum_probs=38.8
Q ss_pred ccccccccccccCC----------------CcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 141 EMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 141 ~~~C~IC~e~~~~~----------------~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
...|+||++.+... ....++|||.||..||..|+....... ...|| .|+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~----~~~CP--~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDG----SLQCP--SCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSS----CCBCT--TTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCC----CCcCC--CCCCccC
Confidence 45899999998421 112678999999999999985432122 47899 8998774
No 55
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.97 E-value=3.1e-06 Score=78.86 Aligned_cols=48 Identities=27% Similarity=0.771 Sum_probs=39.8
Q ss_pred CccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
..+.|+||++.+ .+++.+ +|||.||..|+..|+.. + ...|| .|+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRS----G----NKECP--TCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHT----T----CCBCT--TTCCBCC
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHh----C----cCCCC--CCCCcCC
Confidence 367899999998 567776 99999999999999863 1 36799 7998874
No 56
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.96 E-value=1.2e-06 Score=69.40 Aligned_cols=48 Identities=27% Similarity=0.725 Sum_probs=38.2
Q ss_pred CCccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
.....|+||++.+. + +.++|||.||..|+..|+.. ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~ 60 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSDR---------HRNCP--ICRLQMTG 60 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSCC---------CSSCH--HHHHCTTC
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHHC---------cCcCC--CcCCcccC
Confidence 45688999999874 4 88899999999999998641 46899 78876643
No 57
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=97.83 E-value=7.6e-06 Score=54.18 Aligned_cols=28 Identities=36% Similarity=0.918 Sum_probs=24.9
Q ss_pred CCCccccCCCCccCCCccccccccCCCC
Q 007671 567 DSSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
+++.|.|.+|||.|......|.||..+|
T Consensus 3 ~~~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 3 TSAMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CSCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CCccccCCcccccCCCCCCccCCcCCCC
Confidence 3456999999999999999999998876
No 58
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=97.77 E-value=1.5e-05 Score=59.04 Aligned_cols=27 Identities=33% Similarity=0.896 Sum_probs=24.0
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007671 568 SSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
+..|.|.+|||.|......|.||..+|
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~pr 34 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRAR 34 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCC
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcC
Confidence 346999999999999999999997765
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.76 E-value=7.3e-06 Score=65.83 Aligned_cols=43 Identities=28% Similarity=0.705 Sum_probs=36.0
Q ss_pred ccccccccccccCCCcccccCCCc-ccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 24 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV-------------DKCP--MCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC-------------SBCT--TTCCBCSE
T ss_pred CCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC-------------ccCC--CcCcCccC
Confidence 46799999987 78899999999 999998654 5799 79987753
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=1.5e-05 Score=64.13 Aligned_cols=43 Identities=28% Similarity=0.726 Sum_probs=35.6
Q ss_pred ccccccccccccCCCcccccCCCc-ccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
...|+||++.+ .+++.++|||. ||..|+.. ...|| .|+..+..
T Consensus 25 ~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~-------------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA-------------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH-------------CSBCT--TTCCBCCC
T ss_pred CCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC-------------CCCCc--cCCceecC
Confidence 46799999987 78899999999 99999942 25799 79987754
No 61
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.71 E-value=1.8e-05 Score=59.01 Aligned_cols=30 Identities=33% Similarity=0.803 Sum_probs=25.8
Q ss_pred CCCCCccccCCCCccCCCccccccccCCCC
Q 007671 565 IDDSSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
..+.+.|.|..|||.|......|.||.-+|
T Consensus 6 ~~~~~~W~C~~CT~~N~~~~~~C~~C~~pr 35 (53)
T 2d9g_A 6 SGDEGYWDCSVCTFRNSAEAFKCMMCDVRK 35 (53)
T ss_dssp SSCCCCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred CCCCCCcCCCCCccCCCCCCCccCCCCCcC
Confidence 334557999999999999999999998765
No 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.60 E-value=1.6e-05 Score=70.68 Aligned_cols=56 Identities=25% Similarity=0.758 Sum_probs=43.4
Q ss_pred CCCccccccccccccC-----CCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhHHh
Q 007671 138 DGEEMTCGICFENYPS-----DRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDMIY 204 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~-----~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 204 (594)
+.....|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~ 129 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYH 129 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---------CSBCT--TTCCBCCGGGEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---------CCCCC--CCCCcCChhcce
Confidence 4557889999998732 12377899999999999999864 24899 899998766543
No 63
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=4.5e-05 Score=62.26 Aligned_cols=50 Identities=28% Similarity=0.546 Sum_probs=36.1
Q ss_pred CccccccccccccC------------CCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 140 EEMTCGICFENYPS------------DRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 140 ~~~~C~IC~e~~~~------------~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
...+|+||++.+.. ..++.+ +|||.||..|+..|+.. .-.|| .|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP--~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---------NNRCP--LCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---------CCBCT--TTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---------CCCCC--CcCCCcch
Confidence 45568888887732 224444 59999999999999754 23799 79987754
No 64
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=97.56 E-value=2.5e-05 Score=52.87 Aligned_cols=27 Identities=30% Similarity=0.886 Sum_probs=24.3
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007671 568 SSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
++.|.|.+|||.|......|.||..+|
T Consensus 6 ~~~W~C~~CT~~N~~~~~~Ce~C~~~r 32 (34)
T 3a9j_C 6 GAQWNCTACTFLNHPALIRCEQCEMPR 32 (34)
T ss_dssp CCCEECTTTCCEECTTCSBCTTTCCBS
T ss_pred CCcCCCCCCccccCCCCCeeCCCCCcC
Confidence 346999999999999999999998765
No 65
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.53 E-value=3.4e-05 Score=60.10 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=37.7
Q ss_pred CCccccccccccccCCCcccc--cCCCc-ccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 139 GEEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l--~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
.....|.||++.. .+++.+ +|||. ||..|+..++.. ..+|| .|+..+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP--iCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR---------NKPCP--VCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT---------TCCCT--TTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc---------CCcCC--CcCcchh
Confidence 3466899999976 566655 99999 899999988752 24799 7998774
No 66
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.46 E-value=6.2e-05 Score=78.94 Aligned_cols=48 Identities=31% Similarity=0.688 Sum_probs=40.1
Q ss_pred ccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 141 EMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
...|+||++.+ .+++.++|||.||..|+..++.. + ...|| .|+..+..
T Consensus 332 ~~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~----~----~~~CP--~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES----E----GQGCP--FCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH----T----CSBCT--TTCCBCCE
T ss_pred CCCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc----C----CCCCC--CCCCccCC
Confidence 36899999987 77899999999999999988763 1 35899 79988754
No 67
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.43 E-value=5.5e-05 Score=58.67 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=36.5
Q ss_pred CccccccccccccCCCcccc--cCCCc-ccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPSDRLLAA--ACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l--~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
....|.||++.. .+++.+ +|||. ||..|...++.. .-+|| .|+..+.
T Consensus 6 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP--iCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKA---------GASCP--ICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHT---------TCBCT--TTCCBCC
T ss_pred cCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHh---------CCcCC--CcCchhh
Confidence 356799999975 455555 99998 999999988743 24799 7998774
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.00015 Score=57.16 Aligned_cols=45 Identities=22% Similarity=0.609 Sum_probs=36.8
Q ss_pred CCccccccccccccCCCcccccCCCc-ccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 139 GEEMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
.....|.||++.. .+++.+||||. ||..|... ...|| .|+..|..
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~-------------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY-------------FQQCP--MCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH-------------CSSCT--TTCCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc-------------CCCCC--CCCcchhc
Confidence 4467899999976 67899999999 99999983 24799 79987743
No 69
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.40 E-value=3.7e-05 Score=62.58 Aligned_cols=43 Identities=33% Similarity=0.729 Sum_probs=35.5
Q ss_pred ccccccccccccCCCcccccCCCc-ccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 141 EMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
...|+||++.. .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL-------------QSCP--VCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC-------------SBCT--TTCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc-------------CcCC--CCCchhhC
Confidence 35799999976 78899999999 999998643 2899 89988754
No 70
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.27 E-value=0.00033 Score=57.00 Aligned_cols=53 Identities=19% Similarity=0.394 Sum_probs=42.2
Q ss_pred CCccccccccccccCCCcccccCC-----CcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 139 GEEMTCGICFENYPSDRLLAAACG-----HPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~Cg-----H~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
.....|.||++.+...+++.++|+ |.|+..|+..|+... + ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~----~~~Cp--lCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D----TRCCE--LCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C----CSBCS--SSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C----CCCCC--CCCCeeec
Confidence 346689999998866666678996 999999999999764 1 36899 89987753
No 71
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.26 E-value=0.00017 Score=62.02 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=37.3
Q ss_pred CccccccccccccCC----------------CcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~----------------~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
...+|+||++.+... .++.++|+|.|+..|+..|+.. ...|| .|+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCS--SSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCc--CCCCcce
Confidence 456799999987532 1345789999999999999754 25799 7998753
No 72
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.17 E-value=0.00015 Score=59.99 Aligned_cols=48 Identities=25% Similarity=0.672 Sum_probs=39.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccc-ccCCCCCCCcccCCchh
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQW-SDHGERTGGFYACNRYE 352 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~-~~h~~~~g~~y~C~~~~ 352 (594)
+-||.|...+....+-..++|. .|++.||+.|..+| ..|.. ..|..|+
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~-~C~~~FC~~C~~~w~~~H~~-----~sC~~~~ 74 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCP-QCHQTFCVRCKRQWEEQHRG-----RSCEDFQ 74 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECT-TTCCEECSSSCSBCCTTTTT-----SCHHHHH
T ss_pred eECcCCCchheecCCCCceEeC-CCCCccccccCCchhhcCCC-----CChHHHH
Confidence 5699999999888888889997 79999999999999 44543 3576554
No 73
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.85 E-value=0.00024 Score=73.92 Aligned_cols=43 Identities=30% Similarity=0.816 Sum_probs=36.4
Q ss_pred CccccccccccccCCCcccccCCCc-ccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPSDRLLAAACGHP-FCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l~CgH~-fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
....|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+.
T Consensus 294 ~~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~-------------~~CP--~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL-------------RKCP--ICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC-------------SBCT--TTCCBCC
T ss_pred CCCCCCccCCcC--CceEEcCCCChhHhHHHHhcC-------------CcCC--CCCCCcc
Confidence 357899999987 78999999999 999998743 4799 7998875
No 74
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.75 E-value=0.00068 Score=55.14 Aligned_cols=40 Identities=28% Similarity=0.699 Sum_probs=34.9
Q ss_pred CCCCCC--CCcceeecCCCCcccccC----CCcceeeecccccccc
Q 007671 298 SKPCPR--CKRPIEKNQGCMHMTCTP----PCKFEFCWLCLGQWSD 337 (594)
Q Consensus 298 tK~CPk--C~~~IEK~~GCnhm~C~~----~C~~~FCw~C~~~~~~ 337 (594)
.+-||. |+..|....+...++|.. .|++.||+.|+..|+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 378997 999999888999999941 4999999999999976
No 75
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.56 E-value=0.00043 Score=60.49 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=0.8
Q ss_pred CccccccccccccCC----------------CcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPSD----------------RLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~----------------~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
..-.|.||++.+... .++.++|+|.|+..|+..|+.. ...|| .|+..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP--~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 111 (117)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCC--CCCCeee
Confidence 346799999988431 1233589999999999999865 24799 7987653
No 76
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.51 E-value=0.0012 Score=50.62 Aligned_cols=49 Identities=18% Similarity=0.240 Sum_probs=38.9
Q ss_pred ccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchhH
Q 007671 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQDM 202 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~~ 202 (594)
.+.|+||++.+ .+|+.+ ++||.|++.||..|+... + +|| ..+..+....
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~---~------~cP--~t~~~L~~~~ 52 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT---G------NDP--ITNEPLSIEE 52 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH---S------BCT--TTCCBCCGGG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC---C------CCc--CCcCCCChhh
Confidence 47899999988 789988 899999999999999752 2 388 6777765443
No 77
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=96.48 E-value=0.00092 Score=44.55 Aligned_cols=28 Identities=32% Similarity=0.824 Sum_probs=23.6
Q ss_pred CCCccccCCCCccCCCccccccccCCCC
Q 007671 567 DSSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
..+.|.|+.||+.|..++..|.+|.-+|
T Consensus 4 ~~g~W~C~~C~~~N~~~~~kC~aC~tpk 31 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKPEAVKCVACETPK 31 (33)
T ss_dssp --CCEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CCCceeCCcccCCCccccCEEcccCCCC
Confidence 3456999999999999999999997654
No 78
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=96.32 E-value=0.0013 Score=50.54 Aligned_cols=27 Identities=33% Similarity=0.896 Sum_probs=23.6
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007671 568 SSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
+..|.|.+|||.|......|.||.-+|
T Consensus 6 ~~~W~CP~CTf~N~p~~p~CEmC~~pr 32 (64)
T 3b08_B 6 PVGWQCPGCTFINKPTRPGCEMCCRAR 32 (64)
T ss_dssp CCSEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CCCCcCCCccccCCCCCCccCcCCCCC
Confidence 345999999999999999999997654
No 79
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.46 E-value=0.019 Score=58.78 Aligned_cols=112 Identities=18% Similarity=0.346 Sum_probs=65.3
Q ss_pred ceEEeCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhcHHHHHHHhCCCCCCC---CC-----CC
Q 007671 66 NYTVLTEADIRQRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEERVRKAVGLLEKPA---VQ-----FP 137 (594)
Q Consensus 66 ~~~vl~~~~i~~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d~~~~~~~~gl~~~~~---~~-----~~ 137 (594)
...+|-++.....+++....= .-+|+.++-+- +.+..-.++..-|. .. ..
T Consensus 247 e~~FlGpd~~V~~Lr~~l~~N----------------l~~Wd~d~si~------eNL~~IL~i~~fP~p~~~~~~~~~e~ 304 (381)
T 3k1l_B 247 SLKIIGPTEEVARLRHVLSDG----------------LSNWDSEMNIH------KNLLRMFDLCYFPMPDWSDGPKLDEE 304 (381)
T ss_dssp EEEEESSHHHHHHHHHHHHHH----------------HHTCCTTSCHH------HHHHHHTTCSSCCCCCGGGCCSCTTC
T ss_pred eeEEECChhHhHHHHHHHhhh----------------hhhcCccCCHH------HHHHHHhCccccCCCccccccccccc
Confidence 345577776655555543332 24787765332 23444456522221 11 12
Q ss_pred CCCccccccccccccC-CCcc-----cccCCCcccHhhHHHHHHhhccCCC--CccccccCCCcCCCccchh
Q 007671 138 DGEEMTCGICFENYPS-DRLL-----AAACGHPFCSSCWTGYISTAINDGP--GCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~-~~~v-----~l~CgH~fC~~C~~~yi~~~i~~g~--~~~~i~CP~~~C~~~v~~~ 201 (594)
......|+||++.+.. ..+. ...|||.|...|+..|+.+.-.... +...=.|| -|+..++-.
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCcc
Confidence 2356789999998754 2121 2469999999999999987543221 11234799 899988643
No 80
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.34 E-value=0.0099 Score=47.41 Aligned_cols=50 Identities=22% Similarity=0.499 Sum_probs=37.3
Q ss_pred CccccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
....|.||++.+.... .-..|+|.|...|+..|+.+.- .-.|| .|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNA-------EPRCP--HCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCS-------SCCCT--TTCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcC-------CCCCC--CCcCcCC
Confidence 3567999999985432 2238999999999999996531 25799 7987764
No 81
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.61 E-value=0.021 Score=41.07 Aligned_cols=27 Identities=30% Similarity=0.727 Sum_probs=23.7
Q ss_pred CCCccccCCCCccCCCccccccccCCC
Q 007671 567 DSSHWYCDQCTYANVNSATACAMCQHS 593 (594)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~c~~c~~~ 593 (594)
..+.|.|+-|.+.|..+...|-+|.-|
T Consensus 8 ~~g~W~C~~C~v~N~a~~~kC~aCetp 34 (47)
T 2ebq_A 8 VIGTWDCDTCLVQNKPEAIKCVACETP 34 (47)
T ss_dssp CSSSEECSSSCCEECSSCSBCSSSCCB
T ss_pred CCCceECCeeeccCccCCceecCcCCC
Confidence 345699999999999999999999754
No 82
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=94.46 E-value=0.014 Score=39.02 Aligned_cols=27 Identities=30% Similarity=0.804 Sum_probs=23.0
Q ss_pred CCCccccCCCCccCCCccccccccCCC
Q 007671 567 DSSHWYCDQCTYANVNSATACAMCQHS 593 (594)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~c~~c~~~ 593 (594)
+.+.|.|+-|.+.|..+...|.+|..+
T Consensus 4 ~~G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp --CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CCCceECCeeEeECccccCEEcccCCc
Confidence 455699999999999999999999765
No 83
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.15 E-value=0.08 Score=37.75 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhcH
Q 007671 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (594)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d~ 119 (594)
+.+.|.+...+.++++..|..+|...+||.+..+..||.++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999999999999999999999999999999998753
No 84
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.25 E-value=0.0074 Score=50.88 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=43.8
Q ss_pred ceeec-cCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCC-CcceeecCCCCcccccCCCccee
Q 007671 251 YDVTC-RCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRC-KRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 251 ~~v~C-~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC-~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
+..+| .|+++||..| ...|....-...+..+....... .....|+.| +.+++ ++|. .|+..+
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~-------~~~~~C~~H~~e~l~-------~fC~-~~~~~i 81 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSH-------IRGLMCLEHEDEKVN-------MYCV-TDDQLI 81 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCC-------SSCCCCSSCSSSCCC-------EEET-TTTEEE
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccC-------ccCCcCcCcCCCcce-------EECC-CCCCcc
Confidence 44589 9999999999 66676322111111111100000 012579999 58888 9999 899999
Q ss_pred eecccc
Q 007671 328 CWLCLG 333 (594)
Q Consensus 328 Cw~C~~ 333 (594)
|+.|..
T Consensus 82 C~~C~~ 87 (101)
T 2jun_A 82 CALCKL 87 (101)
T ss_dssp CHHHHH
T ss_pred chhcCC
Confidence 999974
No 85
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.16 E-value=0.08 Score=38.13 Aligned_cols=27 Identities=26% Similarity=0.763 Sum_probs=23.5
Q ss_pred CCCccccCCCCccCCCccccccccCCC
Q 007671 567 DSSHWYCDQCTYANVNSATACAMCQHS 593 (594)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~c~~c~~~ 593 (594)
..+.|.|+-|.+.|.-+...|-+|.-|
T Consensus 8 ~~gsW~C~~C~v~N~a~~~kC~aC~~p 34 (47)
T 2ebr_A 8 PEGSWDCELCLVQNKADSTKCLACESA 34 (47)
T ss_dssp CCSSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CCCeeECCeeecCCcCCcceecCcCCC
Confidence 345599999999999999999999655
No 86
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.91 E-value=0.19 Score=39.96 Aligned_cols=52 Identities=23% Similarity=0.566 Sum_probs=39.8
Q ss_pred CCCCCccccccccccccCCCccccc--CCCcccHhhHHHHHHhhccCCCCccccccCC
Q 007671 136 FPDGEEMTCGICFENYPSDRLLAAA--CGHPFCSSCWTGYISTAINDGPGCLMLRCPD 191 (594)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~~~v~l~--CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~ 191 (594)
.++...+.|.+|-+-+..+.+|..| =+|.||..|-+.+|..+-..+ .+-||.
T Consensus 10 ~~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~----EvyCPS 63 (93)
T 2cs3_A 10 MANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG----EVYCPS 63 (93)
T ss_dssp SCSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS----CCCCTT
T ss_pred CCCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC----cEECCC
Confidence 4456688999999998655566555 479999999999999875433 577885
No 87
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.84 E-value=0.058 Score=45.08 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=31.7
Q ss_pred ccccccccccCCCcccccCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCcc
Q 007671 143 TCGICFENYPSDRLLAAACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (594)
Q Consensus 143 ~C~IC~e~~~~~~~v~l~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v 198 (594)
-|++|--.+. .-...+||.|.||.+|...+.... .-.|| .|+..|
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~--------~k~Cp--~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKG--------DKMCP--GCSDPV 47 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTT--------CCBCT--TTCCBC
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhcc--------CCCCc--CcCCee
Confidence 3777764431 234578999999999999987542 23688 688766
No 88
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.82 E-value=0.19 Score=38.42 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhcH
Q 007671 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (594)
Q Consensus 78 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d~ 119 (594)
.+++.|.+...|.+.++..|+.+|...+||.+..+..||.++
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456779999999999999999999999999999999998764
No 89
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=92.76 E-value=0.13 Score=39.00 Aligned_cols=49 Identities=24% Similarity=0.520 Sum_probs=36.0
Q ss_pred CccccccccccccCCCcccccCC--C---cccHhhHHHHHHhhccCCCCccccccCCCcCCCccc
Q 007671 140 EEMTCGICFENYPSDRLLAAACG--H---PFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVG 199 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l~Cg--H---~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~ 199 (594)
....|.||++.. .++..+||. | .|...|+..|+..+ + ...|| .|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~----~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTIS---R----NTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHH---T----CSBCT--TTCCBCC
T ss_pred CCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhC---C----CCccC--CCCCeee
Confidence 456799999874 333456754 4 89999999999764 1 36899 7988764
No 90
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.51 E-value=0.052 Score=45.54 Aligned_cols=34 Identities=18% Similarity=0.588 Sum_probs=26.3
Q ss_pred CccccccccccccCCCccc--ccCCCcccHhhHHHHH
Q 007671 140 EEMTCGICFENYPSDRLLA--AACGHPFCSSCWTGYI 174 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~--l~CgH~fC~~C~~~yi 174 (594)
+.+.|+||.+.+. .+++. +.|+|+||..|+..+.
T Consensus 2 ee~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHHh
Confidence 3578999997632 34555 8999999999999843
No 91
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.68 E-value=0.81 Score=35.47 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHhcCCChHHHHHHHhhcH
Q 007671 79 QEEDITRISTVLS-ISKVAASILLRFYNWSVSKVHDEWFADE 119 (594)
Q Consensus 79 ~~~~i~~v~~~l~-i~~~~a~~LL~~~~W~~~~l~e~~~~d~ 119 (594)
+.+.|.+...|.+ ..+..|+.+|...+||.+..+..||.+.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 5567999999999 7899999999999999999999999764
No 92
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.15 E-value=0.2 Score=38.03 Aligned_cols=36 Identities=31% Similarity=0.775 Sum_probs=28.3
Q ss_pred CcccCCCCCCCCeeeeecCCCCceeec-c--CCccccccc-ccc
Q 007671 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-R--CSYSFCWNV-KEA 268 (594)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~--C~~~fC~~C-~~~ 268 (594)
+.+.|| .|...|... .+-..++| . |++.||+.| .+|
T Consensus 5 ~~k~CP--~C~~~Iek~--~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 5 NTKECP--KCHVTIEKD--GGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCCT--TTCCCCSSC--CSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred cceECc--CCCCeeEeC--CCCCcEEECCCCcCCEEeeCcCCCc
Confidence 457899 599988765 35567899 5 999999999 654
No 93
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.99 E-value=0.76 Score=35.51 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhcH
Q 007671 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (594)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d~ 119 (594)
+.|.+...|.+.++..|...|...+||.+..+..||.++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 468889999999999999999999999999999998753
No 94
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=87.59 E-value=0.11 Score=43.72 Aligned_cols=27 Identities=33% Similarity=0.858 Sum_probs=0.0
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007671 568 SSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
++.|.|+.|++.|..++..|.||..+|
T Consensus 7 ~~~W~C~~C~~~N~~~~~kC~aC~~pr 33 (98)
T 3gj7_B 7 GSSWQCDTCLLQNKVTDNKCIACQAAK 33 (98)
T ss_dssp ---------------------------
T ss_pred CCcccCCccccCChhhcccccccCCCC
Confidence 445999999999999999999997654
No 95
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=86.56 E-value=0.71 Score=32.83 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHhcCCChHHHHHHHh
Q 007671 79 QEEDITRISTVLSISK-VAASILLRFYNWSVSKVHDEWF 116 (594)
Q Consensus 79 ~~~~i~~v~~~l~i~~-~~a~~LL~~~~W~~~~l~e~~~ 116 (594)
..+.|.+..++.++++ ..|+..|-..+||.+..+..|+
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 3567889999999995 9999999999999998877665
No 96
>3gj7_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.93A {Rattus norvegicus} PDB: 2k0c_A 3ch5_B* 3gj6_B*
Probab=86.14 E-value=0.25 Score=41.39 Aligned_cols=27 Identities=30% Similarity=0.804 Sum_probs=23.7
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007671 568 SSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
.+.|.|.-|++.|..+...|.+|..++
T Consensus 70 ~g~W~C~~C~~~N~~~~~~C~aC~tpk 96 (98)
T 3gj7_B 70 IGTWDCDTCLVQNKPEAVKCVACETPK 96 (98)
T ss_dssp -CCEECTTTCCEECTTCSBCTTTCCBC
T ss_pred CCcccCCcCcCCChhhcceecccCCCC
Confidence 456999999999999999999997664
No 97
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=85.75 E-value=0.36 Score=42.83 Aligned_cols=43 Identities=30% Similarity=0.600 Sum_probs=28.7
Q ss_pred cCCCCCCCCeeeeecCCCCceeeccCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCccee
Q 007671 232 WCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIE 309 (594)
Q Consensus 232 ~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IE 309 (594)
.||- |...+. ..|...|||.||..| ..|-. . ...||.|+.+|.
T Consensus 55 ~C~i--C~~~~~-------~~~~~~CgH~fc~~Ci~~~~~------------~--------------~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 55 QCII--CSEYFI-------EAVTLNCAHSFCSYCINEWMK------------R--------------KIECPICRKDIK 98 (138)
T ss_dssp BCTT--TCSBCS-------SEEEETTSCEEEHHHHHHHTT------------T--------------CSBCTTTCCBCC
T ss_pred CCcc--cCcccC-------CceECCCCCCccHHHHHHHHH------------c--------------CCcCCCCCCcCC
Confidence 5885 764331 234458999999999 54421 1 167999998886
No 98
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=85.12 E-value=1.3 Score=37.16 Aligned_cols=40 Identities=15% Similarity=0.162 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhc
Q 007671 79 QEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 79 ~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d 118 (594)
+.+.|..|.+..+++...|+..|...+|++...++.++.+
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg 78 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEG 78 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3678999999999999999999999999999999888764
No 99
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.08 E-value=1.9 Score=32.16 Aligned_cols=26 Identities=23% Similarity=0.685 Sum_probs=23.2
Q ss_pred CCccccCCCCccCCCccccccccCCC
Q 007671 568 SSHWYCDQCTYANVNSATACAMCQHS 593 (594)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~c~~c~~~ 593 (594)
.+.|-|+-|-+.|.-+...|-.|.-+
T Consensus 29 ~GsWeC~~C~V~N~a~~~kC~ACetp 54 (57)
T 2ebv_A 29 IGSWECSVCCVSNNAEDNKCVSCMSE 54 (57)
T ss_dssp SSSCCCSSSCCCCCSSCSBCSSSCCB
T ss_pred CCeeeCCeeEccCccCCceeeEcCCc
Confidence 45599999999999999999999755
No 100
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=84.88 E-value=0.46 Score=36.00 Aligned_cols=32 Identities=22% Similarity=0.619 Sum_probs=22.7
Q ss_pred ccCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceeec
Q 007671 255 CRCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKN 311 (594)
Q Consensus 255 C~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK~ 311 (594)
=.||+.||..| ..| .. .+...||.|+.++.++
T Consensus 24 ~~CgH~fC~~Ci~~~------------~~-------------~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVDLL------------FV-------------RGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHHHH------------HH-------------TTSSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHHHH------------HH-------------cCCCcCCCCCCccccc
Confidence 37999999999 332 11 1126899999998753
No 101
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=83.76 E-value=0.41 Score=38.46 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=34.6
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcc-----eeeeccccccccCCCCCCCcccCCch
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKF-----EFCWLCLGQWSDHGERTGGFYACNRY 351 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~-----~FCw~C~~~~~~h~~~~g~~y~C~~~ 351 (594)
..||.|+.+|+.++| +..|. .|+. -||-.|+.+......-..--|.||.=
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~-~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C 57 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCE-TCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNG 57 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECT-TTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTT
T ss_pred CCCCCCCCccccCCC--ceECc-cccccCCCcccCcchhhHHHHHHhcCCcCeeeccC
Confidence 579999999999888 55688 7874 37888988765432211135777753
No 102
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=83.72 E-value=0.64 Score=30.74 Aligned_cols=25 Identities=28% Similarity=0.915 Sum_probs=22.8
Q ss_pred ccccCCCCccCCCccccccccCCCC
Q 007671 570 HWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 570 ~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
-|.|..|.+.|-..-..|.+|..|+
T Consensus 6 DW~C~~C~~~Nfa~R~~C~~C~~pk 30 (33)
T 2k1p_A 6 DWQCKTCSNVNWARRSECNMCNTPK 30 (33)
T ss_dssp SCBCSSSCCBCCTTCSBCSSSCCBT
T ss_pred CcccCCCCCccccccccccccCCcC
Confidence 3999999999999999999998765
No 103
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=83.54 E-value=0.28 Score=40.99 Aligned_cols=35 Identities=20% Similarity=0.590 Sum_probs=29.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
-.||-|...+. +.++|. .|||.||+.|+..|-...
T Consensus 23 ~~C~IC~~~~~-----~p~~~~-~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCP-HCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp TBCTTTCSBCS-----SEEECT-TTCCEEEHHHHHHHHHHT
T ss_pred CCCccCCcccc-----CccccC-CCCChhhHHHHHHHHHHC
Confidence 68999998886 357777 799999999999986544
No 104
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=82.82 E-value=2.8 Score=32.72 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHhcCCChHHHHHHHhhc
Q 007671 78 RQEEDITRISTVL-SISKVAASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 78 ~~~~~i~~v~~~l-~i~~~~a~~LL~~~~W~~~~l~e~~~~d 118 (594)
.+...|.+|.++| .+..+++..+|.+|+-|++.++...+++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 5668899999998 6799999999999999999999987764
No 105
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=82.04 E-value=0.38 Score=39.72 Aligned_cols=50 Identities=22% Similarity=0.503 Sum_probs=36.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcce-----eeeccccccccCCCCCCCcccCCch
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFE-----FCWLCLGQWSDHGERTGGFYACNRY 351 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~-----FCw~C~~~~~~h~~~~g~~y~C~~~ 351 (594)
..||.|+.+++.++| +.+|. .|+.. ||.-|..+......-..--|.|+.-
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~-~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~c 87 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCR-SCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHG 87 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEET-TTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTT
T ss_pred ccCccCCCcceecCC--EEECc-cccchhhccccCcchhhHHHHHHHhcCcchhhccC
Confidence 799999999999988 66798 89865 5999988875443321245777754
No 106
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=80.77 E-value=0.58 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.809 Sum_probs=23.2
Q ss_pred CccccCCCCccCCCccccccccCCCC
Q 007671 569 SHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
+-|.|..|.+.|-..-..|..|..+|
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~pr 29 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGADK 29 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCBT
T ss_pred CCCCcCcCcCCcChhcceecCCCCcC
Confidence 44999999999999999999998764
No 107
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=80.67 E-value=0.81 Score=44.70 Aligned_cols=49 Identities=22% Similarity=0.527 Sum_probs=36.8
Q ss_pred ccccccccccccCCCcccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccch
Q 007671 141 EMTCGICFENYPSDRLLAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQ 200 (594)
Q Consensus 141 ~~~C~IC~e~~~~~~~v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~ 200 (594)
...|.||.+.+... ... .|+|.|...|+..|+... + ..+|| .|+..++.
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~---~----~~~CP--~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSN---A----EPRCP--HCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTC---S----SCBCT--TTCCBCCS
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhC---C----CCCCC--CCCCCCCC
Confidence 56799999987532 222 399999999999998652 1 46899 79987754
No 108
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=78.95 E-value=1.5 Score=36.55 Aligned_cols=48 Identities=21% Similarity=0.622 Sum_probs=32.1
Q ss_pred ccCCCCCCCCeeeeecCCCCceeec-cCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcce
Q 007671 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPI 308 (594)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~I 308 (594)
.+||. |+..+.. ...- .|++.||..| ..+ .....+.||.|+.+|
T Consensus 2 hfC~~--C~~Pi~i-------ygRmIPCkHvFCydCa~~~-------------------------~~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 2 HFCDK--CGLPIKV-------YGRMIPCKHVFCYDCAILH-------------------------EKKGDKMCPGCSDPV 47 (101)
T ss_dssp CBCTT--TCSBCSE-------EEEEETTCCEEEHHHHHHH-------------------------HHTTCCBCTTTCCBC
T ss_pred eecCc--cCCCeEE-------EeeeccccccHHHHHHHHH-------------------------HhccCCCCcCcCCee
Confidence 36774 7765432 2355 7999999999 332 112238999999999
Q ss_pred eecC
Q 007671 309 EKNQ 312 (594)
Q Consensus 309 EK~~ 312 (594)
.+.+
T Consensus 48 ~rVe 51 (101)
T 3vk6_A 48 QRIE 51 (101)
T ss_dssp SEEE
T ss_pred eeeE
Confidence 9644
No 109
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.33 E-value=0.54 Score=36.75 Aligned_cols=36 Identities=22% Similarity=0.611 Sum_probs=25.7
Q ss_pred eeec-cCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceeecCC
Q 007671 252 DVTC-RCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQG 313 (594)
Q Consensus 252 ~v~C-~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK~~G 313 (594)
.+.. .|++.||..| .. |+.. + ..||.|+.+|....|
T Consensus 38 ~~~~l~C~H~fh~~Ci~~------------w~~~-------------~-~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 38 LLRVLPCNHEFHAKCVDK------------WLKA-------------N-RTCPICRADSGPSSG 75 (75)
T ss_dssp EEEEETTTEEEETTHHHH------------HHHH-------------C-SSCTTTCCCCCCCCC
T ss_pred eEEEECCCCHhHHHHHHH------------HHHc-------------C-CcCcCcCCcCCCCCC
Confidence 3444 7999999999 44 3321 1 689999999987665
No 110
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.24 E-value=0.59 Score=35.10 Aligned_cols=33 Identities=30% Similarity=0.723 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
..||-|...+.. .++- .|||.||+.|+..|-..
T Consensus 21 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 21 VICPICLDILQK-----PVTI--DCGHNFCLKCITQIGET 53 (63)
T ss_dssp CBCTTTCSBCSS-----CEEC--TTSSEECHHHHHHHHHH
T ss_pred CCCCcCCchhCC-----eEEe--CCCCcchHHHHHHHHHc
Confidence 579999887762 3444 49999999999998753
No 111
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=76.98 E-value=4.3 Score=27.39 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHH
Q 007671 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEW 115 (594)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~ 115 (594)
.+.|.++.+. |.+...|...|+..+||++...+.+
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4568888886 9999999999999999998876643
No 112
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=76.49 E-value=0.69 Score=42.22 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=27.7
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
-.||-|...+. +.++.. .|||.||+.|...|-..
T Consensus 55 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 55 LMCPICLDMLK-----NTMTTK-ECLHRFCADCIITALRS 88 (165)
T ss_dssp HBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHHT
T ss_pred CCCcccChHhh-----CcCEeC-CCCChhHHHHHHHHHHh
Confidence 47999988877 356775 59999999999998764
No 113
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=75.73 E-value=1.6 Score=32.07 Aligned_cols=26 Identities=23% Similarity=0.664 Sum_probs=20.8
Q ss_pred cCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceee
Q 007671 256 RCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 310 (594)
Q Consensus 256 ~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK 310 (594)
.||+.||..| ..+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 6999999999 441 1789999998863
No 114
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.10 E-value=1.2 Score=34.40 Aligned_cols=32 Identities=28% Similarity=0.701 Sum_probs=25.3
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
..||-|...+. +.++- .|||.||+.|+..|-.
T Consensus 21 ~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEEC--TTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEc--CCCChhhHHHHHHHHH
Confidence 58999998776 23444 4999999999999875
No 115
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=75.06 E-value=1.8 Score=29.71 Aligned_cols=27 Identities=15% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 333 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (594)
+.|+.++.+++ ++|. .|+...|+.|..
T Consensus 4 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 30 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCK-DDGTLSCVICRD 30 (42)
T ss_dssp CCCCSSCSSCC-------CCCC-SSSSSSCCTTSS
T ss_pred ccchhhCCeee-------EEeC-CCCeEEeccCCC
Confidence 67999999999 9999 899999999975
No 116
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=74.49 E-value=1.1 Score=36.89 Aligned_cols=27 Identities=26% Similarity=0.811 Sum_probs=23.4
Q ss_pred CCccccCCCCccCCCccccccccCCCC
Q 007671 568 SSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
.+.|.|..|++.|.-+...|.+|..++
T Consensus 63 ~g~W~C~~C~~~N~a~~~~C~~C~~pk 89 (92)
T 3gj8_B 63 EGSWDCEVCLVQNKADSTKCIACESAK 89 (92)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCBC
T ss_pred CCcccCCcCCcCChhhcccccccCCCC
Confidence 456999999999999999999997653
No 117
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.08 E-value=0.93 Score=34.37 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=25.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
..||-|...+.. .+. . .|||.||+.|...|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQ-T-ECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESS-----CCC-C-SSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcC-----eeE-C-CCCCHHHHHHHHHHHH
Confidence 579999887762 344 4 5999999999999874
No 118
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=73.95 E-value=0.66 Score=38.35 Aligned_cols=26 Identities=23% Similarity=0.756 Sum_probs=0.0
Q ss_pred CccccCCCCccCCCccccccccCCCC
Q 007671 569 SHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
+.|.|..|++.|..+...|.+|..+|
T Consensus 7 g~W~C~~C~~~N~~~~~~C~~C~~pk 32 (92)
T 3gj8_B 7 GSWECPVCCVSNKAEDSRCVSCTSEK 32 (92)
T ss_dssp --------------------------
T ss_pred cCCCCCcCCCEeccccceecccCCCC
Confidence 35999999999999999999997654
No 119
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.84 E-value=0.83 Score=35.35 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=26.1
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
..||-|...+.. .++-. .|||.||+.|...|-..
T Consensus 16 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTIT-ECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GSCTTTSSCCSS-----CEECS-SSCCEECHHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEEC-CCCCHHHHHHHHHHHHc
Confidence 589999887763 35554 59999999999888643
No 120
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=73.56 E-value=1.1 Score=37.79 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=27.7
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
-.||-|...+. +.++.. .|||.||+.|...|-..+
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTII-ECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp TBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHTSC
T ss_pred CCCccCChHHh-----CcCEeC-CCCChhhHHHHHHHHHhC
Confidence 68999988876 356664 599999999999886543
No 121
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.69 E-value=1.6 Score=32.71 Aligned_cols=27 Identities=26% Similarity=0.664 Sum_probs=25.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 333 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (594)
..|+.|+.+++ ++|. .|+...|+.|..
T Consensus 15 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 41 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQ-EDGKVICWLCER 41 (59)
T ss_dssp SBCTTTCCBCC-------EEET-TTCSEECHHHHT
T ss_pred ccChhhCceee-------eecC-CCCcEEecccCC
Confidence 67999999999 9999 899999999975
No 122
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=72.61 E-value=1.1 Score=35.71 Aligned_cols=35 Identities=29% Similarity=0.863 Sum_probs=23.6
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWS 336 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~ 336 (594)
..||-|..++... .-..+-|. |||.||..|+..+.
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~--CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCT--CGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSST--TSCCCCHHHHHHHT
T ss_pred CcCCccCccCccc-cccccccC--CCCCcCHHHHHHHH
Confidence 5799999877521 11223354 99999999987654
No 123
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.44 E-value=51 Score=33.81 Aligned_cols=34 Identities=12% Similarity=-0.148 Sum_probs=16.1
Q ss_pred HHHHHHHhhhhhhhcccCccchhhHHHHHHHHHHHHHh
Q 007671 431 VECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESG 468 (594)
Q Consensus 431 ~~~r~~L~~sy~~~yy~~~~~~~~~~~fe~~Q~~~e~~ 468 (594)
.-||+.-+-+++.++-..-+ .+.-+.+|++|+..
T Consensus 158 d~c~~~C~~sC~~~l~~~vD----~e~ye~qqKQL~qv 191 (390)
T 1deq_A 158 DIKIRSCKGSCSRALEHKVD----LEDYKNQQKQLEQV 191 (390)
T ss_pred HHHhcccccccchhhhhhcc----HHHHHHHHHHHHhh
Confidence 44555555555554422111 34455556664443
No 124
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=72.39 E-value=0.96 Score=35.79 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=29.3
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCCCCCCCcccCCc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHGERTGGFYACNR 350 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~~~~g~~y~C~~ 350 (594)
-.||-|...+.. .+.. .|||.||..|+..|-......++...|+.
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~ 64 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSA--DCNHSFCRACITLNYESNRNTDGKGNCPV 64 (85)
T ss_dssp TSCTTTCSCCSS-----CEEC--TTSCCBCHHHHHHHHHHSBCTTSCBCCTT
T ss_pred CCCcCCChhhCc-----ceeC--CCCCHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 579999887753 2443 49999999999887544211122345653
No 125
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=71.99 E-value=1.2 Score=36.65 Aligned_cols=35 Identities=20% Similarity=0.522 Sum_probs=27.3
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
-.||-|...+.. .++.. .|||.||..|...|-..+
T Consensus 23 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~~ 57 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIP-QCSHNYCSLCIRKFLSYK 57 (99)
T ss_dssp TBCTTTCSBCSS-----EEECT-TTCCEEEHHHHHHHHTTC
T ss_pred CCcccCChhhCC-----cCEEC-CCCCHhhHHHHHHHHHCC
Confidence 689999987763 45554 599999999999887543
No 126
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=71.97 E-value=1.5 Score=34.20 Aligned_cols=31 Identities=26% Similarity=0.736 Sum_probs=27.3
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
..||.++.+++ ++|. .|+...|+.|.. ..|.
T Consensus 19 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~--~~H~ 49 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQ-TDQTCICYLCMF--QEHK 49 (72)
T ss_dssp CBCTTTCCBCC-------EEES-SSCCEECHHHHH--TTTS
T ss_pred CcCcccCCceE-------EEeC-CCCeEEccccCC--CCCC
Confidence 68999999999 9999 899999999975 5554
No 127
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=71.73 E-value=2.5 Score=30.40 Aligned_cols=29 Identities=21% Similarity=0.628 Sum_probs=21.0
Q ss_pred CCCCCCCCc-ceeecCCCCcccccCCCccee
Q 007671 298 SKPCPRCKR-PIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 298 tK~CPkC~~-~IEK~~GCnhm~C~~~C~~~F 327 (594)
...||.|+. .|.-+..=..+.|. .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~-~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA-KCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES-SSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc-ccCCcc
Confidence 468999998 88766655668887 666543
No 128
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=71.64 E-value=40 Score=31.77 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHccccc
Q 007671 509 NYFENLVRALENGLSD 524 (594)
Q Consensus 509 ~~~~~l~~~le~gl~~ 524 (594)
+|+.+|.+.|++-++.
T Consensus 191 ~y~~kl~~~i~~~~~~ 206 (207)
T 3bvo_A 191 RYFSNIEEKIKLKKIP 206 (207)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 6788888888765543
No 129
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=71.37 E-value=1.4 Score=35.71 Aligned_cols=36 Identities=25% Similarity=0.649 Sum_probs=28.9
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
.-+||.|+....+..+=..+.|. .|++.|- ++.|..
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~-~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCS-YCDYKFT---GGSYKP 62 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEET-TTCCEEE---CCSSSS
T ss_pred cCcCCCCCCcceeccCCCeEECC-CCCCEec---CCEecc
Confidence 36899999999999888899998 8988774 445543
No 130
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=71.00 E-value=1.4 Score=34.51 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=21.3
Q ss_pred cCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceee
Q 007671 256 RCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 310 (594)
Q Consensus 256 ~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK 310 (594)
.|++.||..| ..| +.. ...||.|+..|..
T Consensus 35 ~C~H~fc~~Ci~~~------------~~~--------------~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 35 PCNHLFHDSCIVPW------------LEQ--------------HDSCPVCRKSLTG 64 (78)
T ss_dssp TTSCEEETTTTHHH------------HTT--------------TCSCTTTCCCCCC
T ss_pred CCCCeecHHHHHHH------------HHc--------------CCcCcCcCCccCC
Confidence 7999999999 443 211 1689999998863
No 131
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=70.72 E-value=3.1 Score=35.49 Aligned_cols=27 Identities=30% Similarity=0.574 Sum_probs=18.4
Q ss_pred cccCCCCCCCCeeeeecCCCCceeeccCCccccccc
Q 007671 230 TKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNV 265 (594)
Q Consensus 230 ~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C 265 (594)
...||- |...+. ..+...||+.||..|
T Consensus 18 ~~~C~I--C~~~~~-------~p~~~~CgH~fC~~C 44 (118)
T 3hct_A 18 KYECPI--CLMALR-------EAVQTPCGHRFCKAC 44 (118)
T ss_dssp GGBCTT--TCSBCS-------SEEECTTSCEEEHHH
T ss_pred CCCCCc--CChhhc-------CeEECCcCChhhHHH
Confidence 357884 765432 224558999999999
No 132
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=70.67 E-value=1.9 Score=31.31 Aligned_cols=27 Identities=19% Similarity=0.556 Sum_probs=25.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 333 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (594)
..||.++.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 35 (53)
T 2did_A 9 SLCPQHHEALS-------LFCY-EDQEAVCLICAI 35 (53)
T ss_dssp CBCTTTCCBCC-------EEES-SSCSEECHHHHT
T ss_pred CcChhhCCeee-------EEeC-CCCeEEeccccC
Confidence 68999999999 9999 899999999974
No 133
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=70.40 E-value=2.1 Score=33.23 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=23.5
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCccee
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
.-.||.|+.+++-..+...+.|. .||..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSR-QAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEET-TTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 35899999999988888888887 676655
No 134
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.00 E-value=24 Score=37.78 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHcc
Q 007671 509 NYFENLVRALENG 521 (594)
Q Consensus 509 ~~~~~l~~~le~g 521 (594)
..++++.+.||+=
T Consensus 176 ~sY~~~QKQLeQv 188 (562)
T 3ghg_A 176 KDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4456666666653
No 135
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=69.90 E-value=2.2 Score=36.20 Aligned_cols=34 Identities=21% Similarity=0.546 Sum_probs=25.6
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
-.||-|...+.. .++ . .|||.||..|+..|..++
T Consensus 16 ~~C~iC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~~ 49 (115)
T 3l11_A 16 CQCGICMEILVE-----PVT-L-PCNHTLCKPCFQSTVEKA 49 (115)
T ss_dssp HBCTTTCSBCSS-----CEE-C-TTSCEECHHHHCCCCCTT
T ss_pred CCCccCCcccCc-----eeE-c-CCCCHHhHHHHHHHHhHC
Confidence 479999877652 233 3 499999999999997653
No 136
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=69.83 E-value=1.4 Score=34.53 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
-.||-|...+. +.++- .|||.||..|...|-..
T Consensus 9 ~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTT
T ss_pred CCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHH
Confidence 57999998776 23444 49999999999998764
No 137
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=69.72 E-value=1.2 Score=38.38 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
-.||-|...+. +.++- .|||.||..|+..|-.
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHh
Confidence 57999988776 23443 4999999999988865
No 138
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=69.54 E-value=27 Score=35.79 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=3.7
Q ss_pred HHHHhHHHHH
Q 007671 464 EAESGLERLH 473 (594)
Q Consensus 464 ~~e~~~e~L~ 473 (594)
+||..++-|.
T Consensus 117 eLe~~i~~lk 126 (390)
T 1deq_A 117 DLRSRIEILR 126 (390)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 139
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=69.53 E-value=1.3 Score=34.47 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=25.8
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
-.||-|...+. +.++-. .|||.||+.|+..|-..
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCT-----TCEECS-SSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcC-CCCCHHHHHHHHHHHHh
Confidence 57999988776 234432 39999999999998754
No 140
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.49 E-value=1.4 Score=36.99 Aligned_cols=34 Identities=26% Similarity=0.645 Sum_probs=26.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
-.||-|...+. +.++ . .|||.||+.|...|-...
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSS
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhC
Confidence 68999998775 2344 3 499999999999886543
No 141
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=69.39 E-value=1.9 Score=33.70 Aligned_cols=33 Identities=18% Similarity=0.595 Sum_probs=25.5
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
-.||-|...+.. .++- .|||.||..|...|-..
T Consensus 13 ~~C~IC~~~~~~-----p~~l--~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSL--DCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCC--SSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeEC--CCCCHHHHHHHHHHHHh
Confidence 579999877652 3444 49999999999988765
No 142
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.84 E-value=1.3 Score=35.45 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=26.6
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
..||-|...+..... ..+.- .|||.||+.|...|-...
T Consensus 16 ~~C~IC~~~~~~~~~-~~~~~--~CgH~fC~~Ci~~~~~~~ 53 (88)
T 2ct2_A 16 LECPICMESFTEEQL-RPKLL--HCGHTICRQCLEKLLASS 53 (88)
T ss_dssp CBCTTTCCBCCTTSS-CEEEC--SSSCEEEHHHHHHHHHHC
T ss_pred CCCccCCccccccCC-CeEEC--CCCChhhHHHHHHHHHcC
Confidence 579999887764321 12333 499999999999986543
No 143
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=67.65 E-value=1.1 Score=49.05 Aligned_cols=22 Identities=36% Similarity=0.866 Sum_probs=0.0
Q ss_pred cccCCCCccCCCccccccccCC
Q 007671 571 WYCDQCTYANVNSATACAMCQH 592 (594)
Q Consensus 571 ~~~~~~~~~~~~~~~~c~~c~~ 592 (594)
-.|++|||.|-.+-..|.||.-
T Consensus 181 ~~CP~CTF~NHPsl~~CEiCg~ 202 (566)
T 1w7p_D 181 NICPACTFANHPQIGNCEICGH 202 (566)
T ss_dssp ----------------------
T ss_pred CCCCcccccCChhhhcccccCC
Confidence 5799999999999999999953
No 144
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=67.40 E-value=2 Score=30.54 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=24.0
Q ss_pred CCCCCCC-cceeecCCCCcccccCCCcceeeeccc
Q 007671 299 KPCPRCK-RPIEKNQGCMHMTCTPPCKFEFCWLCL 332 (594)
Q Consensus 299 K~CPkC~-~~IEK~~GCnhm~C~~~C~~~FCw~C~ 332 (594)
..|+.++ .+++ ++|. .|+...||.|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~ 33 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCK 33 (48)
T ss_dssp CBCSSSTTSBCC-------EEET-TTTEEECHHHH
T ss_pred CcCCCCCCcccc-------EEcC-CCCeeEccccc
Confidence 5799999 8899 9999 89999999996
No 145
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=66.72 E-value=3.4 Score=29.68 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=27.1
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
..||-|...+..... .+.-. .|+|.||..|+..|...
T Consensus 6 ~~C~IC~~~~~~~~~--~~~~~-~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 6 VECAVCLAELEDGEE--ARFLP-RCGHGFHAECVDMWLGS 42 (55)
T ss_dssp CCCTTTCCCCCTTSC--CEECS-SSCCEECTTHHHHTTTT
T ss_pred CcCccCCccccCCCc--eEECC-CCCCcccHHHHHHHHHc
Confidence 679999888774432 23333 49999999999999754
No 146
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=66.58 E-value=1.6 Score=33.31 Aligned_cols=37 Identities=24% Similarity=0.615 Sum_probs=26.7
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
..||-|...+..... +... .|+|.||+.|+..|-..+
T Consensus 15 ~~C~IC~~~~~~~~~---~~~~-~C~H~fc~~Ci~~~~~~~ 51 (69)
T 2kiz_A 15 EKCTICLSILEEGED---VRRL-PCMHLFHQVCVDQWLITN 51 (69)
T ss_dssp CSBTTTTBCCCSSSC---EEEC-TTSCEEEHHHHHHHHHHC
T ss_pred CCCeeCCccccCCCc---EEEe-CCCCHHHHHHHHHHHHcC
Confidence 689999887753221 3444 599999999999996543
No 147
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=66.02 E-value=4.1 Score=37.10 Aligned_cols=31 Identities=26% Similarity=0.503 Sum_probs=21.4
Q ss_pred CcccCCCCCCCCeeeeecCCCCceeeccCCccccccc-ccc
Q 007671 229 KTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNV-KEA 268 (594)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C-~~~ 268 (594)
....||- |...+. ..|.+.||+.||..| ..|
T Consensus 17 ~~~~C~I--C~~~~~-------~pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 17 SKYECPI--CLMALR-------EAVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GGGBCTT--TCSBCS-------SEEECTTSCEEEHHHHHHH
T ss_pred CCCCCCC--CChhhc-------CcEECCCCCHHHHHHHHHH
Confidence 3457885 775432 236679999999999 554
No 148
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=65.67 E-value=2 Score=30.88 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=26.7
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
..||-|...+...+ ..+... .|+|.||+.|+..|-..
T Consensus 6 ~~C~IC~~~~~~~~--~~~~~~-~CgH~fc~~Ci~~~~~~ 42 (55)
T 2ecm_A 6 SGCPICLEDIHTSR--VVAHVL-PCGHLLHRTCYEEMLKE 42 (55)
T ss_dssp CSCTTTCCCCCTTT--SCEEEC-TTSCEEETTHHHHHHHH
T ss_pred CcCcccChhhcCCC--cCeEec-CCCCcccHHHHHHHHHc
Confidence 67999988775221 224455 69999999999988644
No 149
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=65.67 E-value=4.7 Score=29.11 Aligned_cols=28 Identities=29% Similarity=0.642 Sum_probs=23.6
Q ss_pred CCCccccCCCCccCCCccccccccCCCC
Q 007671 567 DSSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
..-.|.|..|.--|+.-...|.-|..-|
T Consensus 8 ~eD~WkC~~C~k~N~Pl~ryC~rCwaLR 35 (53)
T 2cr8_A 8 SEDEWQCTECKKFNSPSKRYCFRCWALR 35 (53)
T ss_dssp CSCCEECSSSCCEECSSCCBCTTTCCBC
T ss_pred CcceeecccccccCCCccchhHHHHHhh
Confidence 3445999999999999999999996543
No 150
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.98 E-value=0.97 Score=35.75 Aligned_cols=33 Identities=24% Similarity=0.651 Sum_probs=24.6
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
-.||-|...+.. .++- .|||.||..|+..|-..
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSL--DCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCTTTCSCCSS-----CBCC--SSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCcccCC-----ceeC--CCCCHHHHHHHHHHHHH
Confidence 589999988763 2333 49999999999887543
No 151
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=64.95 E-value=2.3 Score=34.54 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=21.1
Q ss_pred ccCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCccee
Q 007671 255 CRCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIE 309 (594)
Q Consensus 255 C~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IE 309 (594)
-.|++.||..| ..| +.. ...||.|+..|.
T Consensus 59 l~C~H~Fh~~Ci~~w------------l~~--------------~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 59 LPCHHYFHKPCVSIW------------LQK--------------SGTCPVCRCMFP 88 (91)
T ss_dssp ETTTEEEEHHHHHHH------------HTT--------------TCBCTTTCCBSS
T ss_pred cCCCChHHHHHHHHH------------HHc--------------CCcCcCcCccCC
Confidence 37999999999 443 321 168999998775
No 152
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=64.64 E-value=2.9 Score=35.62 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
-.||-|...+. +.++-. .|||.||+.|...|-.
T Consensus 23 ~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc
Confidence 68999988775 234442 4999999999988854
No 153
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=63.70 E-value=1.9 Score=32.60 Aligned_cols=34 Identities=26% Similarity=0.870 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
..||-|...+.. ...-. +|||.||+.|...|...
T Consensus 6 ~~C~IC~~~~~~-----~~~~~-~C~H~fc~~Ci~~~~~~ 39 (68)
T 1chc_A 6 ERCPICLEDPSN-----YSMAL-PCLHAFCYVCITRWIRQ 39 (68)
T ss_dssp CCCSSCCSCCCS-----CEEET-TTTEEESTTHHHHHHHH
T ss_pred CCCeeCCccccC-----CcEec-CCCCeeHHHHHHHHHhC
Confidence 689999887752 22444 59999999999888643
No 154
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.58 E-value=1.6 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.770 Sum_probs=24.8
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
..||-|...+.. .+. . .|||.||+.|+..|-.
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVI-I-ECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSS-----CCC-C-SSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCc-----cEe-C-CCCCccCHHHHHHHHH
Confidence 579999887763 233 3 4999999999999854
No 155
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=63.53 E-value=2 Score=31.81 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=19.8
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCccee
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
.+.||+|+..+--...-+.++|. .|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~-kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCG-RCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECT-TTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECC-CCCCEE
Confidence 48899999844322234578898 788764
No 156
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=63.47 E-value=7.8 Score=27.38 Aligned_cols=26 Identities=27% Similarity=0.841 Sum_probs=23.0
Q ss_pred CccccC--CCCccCCCccccccccCCCC
Q 007671 569 SHWYCD--QCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 569 ~~~~~~--~~~~~~~~~~~~c~~c~~~~ 594 (594)
+-|.|. .|.+.|-..-..|-.|..+|
T Consensus 13 GDW~C~~~~C~~~Nfa~R~~C~~C~~pr 40 (45)
T 1n0z_A 13 GDWICPDKKCGNVNFARRTSCDRCGREK 40 (45)
T ss_dssp SSCBCSSTTTCCBCCSSCSBCSSSCCBC
T ss_pred CCcCCCCCCCCCEEccccccccccCCcC
Confidence 349999 89999999999999998765
No 157
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=63.41 E-value=2.6 Score=30.11 Aligned_cols=31 Identities=23% Similarity=0.497 Sum_probs=26.9
Q ss_pred CCCCCC-CcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
..||.+ +.++. ++|. .|+..+|+.|.. ..|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~~~~~iC~~C~~--~~H~ 38 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCE-SCDTLTCRDCQL--NAHK 38 (50)
T ss_dssp CBCSSSTTCBCC-------EEET-TTTEEECHHHHH--TTTT
T ss_pred CcCcCCCCCCEE-------EEeC-CCCEEEecccCC--CcCC
Confidence 679999 89999 9999 899999999976 3554
No 158
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=63.29 E-value=2.7 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.1
Q ss_pred cCCcc-ccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceee
Q 007671 256 RCSYS-FCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 310 (594)
Q Consensus 256 ~C~~~-fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK 310 (594)
.|||. ||..| ..+ +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 89999 99999 543 689999998874
No 159
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.86 E-value=1.8 Score=33.22 Aligned_cols=34 Identities=32% Similarity=0.722 Sum_probs=25.4
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
..||-|...+.. .++- .|+|.||+.|...|-..+
T Consensus 16 ~~C~IC~~~~~~-----~~~~--~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSL--PCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp CBCSSSSSBCSS-----EEEE--TTTEEEEHHHHHHCTTCS
T ss_pred CCCccCCcccCC-----CEEc--cCCCHHHHHHHHHHHHCC
Confidence 579999877652 2333 499999999999886543
No 160
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=62.80 E-value=3.7 Score=31.39 Aligned_cols=33 Identities=30% Similarity=0.656 Sum_probs=25.6
Q ss_pred CCccccccccccccCCCcccccC-CCcccHhhHHHHH
Q 007671 139 GEEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTGYI 174 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~~~v~l~C-gH~fC~~C~~~yi 174 (594)
.+..-|.||.++ -.+.-+.| |-.||..||+..-
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 345679999987 33556778 7899999999875
No 161
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.70 E-value=3.4 Score=30.00 Aligned_cols=29 Identities=24% Similarity=0.524 Sum_probs=18.4
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCccee
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
.+.||+|+..+.-...=+.+.|. .||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~-kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACG-KCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECS-SSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECC-CCCCEE
Confidence 37899999754322112567887 787643
No 162
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=62.26 E-value=3.4 Score=31.04 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=24.7
Q ss_pred CCCCCC-CcceeecCCCCcccccCCCcceeeecccc
Q 007671 299 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLG 333 (594)
Q Consensus 299 K~CPkC-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (594)
..||.| +.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 36 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCKV 36 (64)
T ss_dssp CCCSSCTTCCCC-------SEES-SSCCCCCSHHHH
T ss_pred CcCcCcCCCccc-------eEcC-cCCceeCccccC
Confidence 679999 89999 9999 899999999964
No 163
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=61.39 E-value=1.7 Score=33.21 Aligned_cols=39 Identities=26% Similarity=0.490 Sum_probs=27.3
Q ss_pred CCCCCCCcceeec-CCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKN-QGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~-~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
..||-|...+... .+=..+.-. .|||.||+.|...|-..
T Consensus 11 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 50 (71)
T ss_dssp CBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH
T ss_pred CCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc
Confidence 6799999887643 111223444 59999999999998643
No 164
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.19 E-value=2.8 Score=31.10 Aligned_cols=27 Identities=19% Similarity=0.587 Sum_probs=24.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 333 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (594)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 45 (57)
T 2egm_A 19 GICPKHQEALK-------LFCE-VDEEAICVVCRE 45 (57)
T ss_dssp SBCTTTCCBCC-------EEET-TTTEEECHHHHH
T ss_pred CcChhhCceee-------EEcC-CCCcEEecccCC
Confidence 67999999999 9999 899999999975
No 165
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.08 E-value=2.1 Score=33.77 Aligned_cols=33 Identities=21% Similarity=0.500 Sum_probs=25.4
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
-.||-|...+.. .++ . .|||.||+.|...|-..
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVV-T-KCRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCCS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhcC-----eeE-c-cCCCHhHHHHHHHHHHC
Confidence 579999888753 344 3 59999999999988654
No 166
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=60.77 E-value=8.5 Score=38.10 Aligned_cols=43 Identities=12% Similarity=0.332 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhcHH
Q 007671 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADEE 120 (594)
Q Consensus 78 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d~~ 120 (594)
.+++.|.+...+.+.++..|...|..++|+.+..++.||.++.
T Consensus 14 ~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 3667899999999999999999999999999999999997654
No 167
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=60.75 E-value=2.3 Score=38.25 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
-.||-|...+. +.++ . .|||.||+.|+..|-.++
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~ 112 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQ 112 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhC
Confidence 57999988775 2344 3 599999999999887653
No 168
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.36 E-value=4.4 Score=30.92 Aligned_cols=33 Identities=36% Similarity=0.751 Sum_probs=25.3
Q ss_pred cccCCCCCCCCeeeeecCCCCceeec-cCCccccccc--cccc
Q 007671 230 TKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNV--KEAH 269 (594)
Q Consensus 230 ~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C--~~~H 269 (594)
...|..++|... ....+.| .|+..||..| .+.|
T Consensus 12 ~~~Cs~~~Ck~~-------~ll~f~C~~C~~~FC~~HR~~e~H 47 (63)
T 1x4v_A 12 TNKCERAGCRQR-------EMMKLTCERCSRNFCIKHRHPLDH 47 (63)
T ss_dssp CCCCCSTTCCCC-------CSSCCBCSSSCCBCCHHHHSTTSS
T ss_pred CCCCCccCCCCC-------CccceECCCCCcccCcccCCccCC
Confidence 458998899853 2345799 7999999999 5666
No 169
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.46 E-value=2.2 Score=32.18 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=26.6
Q ss_pred CCCCCCCcceeecCC-CCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQG-CMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~G-Cnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
..||-|...+..... -..+.-. .|||.||..|+..|-..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 55 (69)
T 2ea6_A 16 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 55 (69)
T ss_dssp CCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH
T ss_pred CCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc
Confidence 679999887764321 1122334 59999999999998643
No 170
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.40 E-value=5.4 Score=32.41 Aligned_cols=58 Identities=22% Similarity=0.622 Sum_probs=37.3
Q ss_pred ccCCCCCCCCeeeeecCCCCceeec-cCCcccccccccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCccee
Q 007671 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNVKEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIE 309 (594)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IE 309 (594)
..|-. |+--|-.. ..+...|-| .|++..|..|.++- +....+-||+|+.+..
T Consensus 17 qiCqi--CGD~VG~~-~~Ge~FVAC~eC~FPvCrpCyEYE------------------------rkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEI--CGDQIGLT-VEGDLFVACNECGFPACRPCYEYE------------------------RREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSS--SCCBCCBC-SSSSBCCSCSSSCCCCCHHHHHHH------------------------HHTSCSSCTTTCCCCC
T ss_pred Ccccc--ccCccccC-CCCCEEEeeeccCChhhHHHHHHH------------------------HhccCccccccCCccc
Confidence 34553 66554443 345677899 99999999883211 0112389999999988
Q ss_pred ecCCCC
Q 007671 310 KNQGCM 315 (594)
Q Consensus 310 K~~GCn 315 (594)
+..|+-
T Consensus 70 r~kgsp 75 (93)
T 1weo_A 70 RLRGSP 75 (93)
T ss_dssp CCTTCC
T ss_pred cccCCC
Confidence 666654
No 171
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=58.09 E-value=2.5 Score=37.54 Aligned_cols=33 Identities=18% Similarity=0.611 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
-.||-|...+. +.++. .|||.||..|...|-..
T Consensus 32 ~~C~IC~~~~~-----~pv~~--~CgH~FC~~Ci~~~~~~ 64 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQA--QCGHRYCSFCLASILSS 64 (141)
T ss_dssp GBCTTTCSBCS-----SEEEC--TTSCEEEHHHHHHHGGG
T ss_pred cCCCCCChhhc-----CcEEC--CCCCccCHHHHHHHHhc
Confidence 57999998776 23554 49999999999998653
No 172
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=57.79 E-value=11 Score=39.38 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=22.7
Q ss_pred ccCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceee
Q 007671 255 CRCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 310 (594)
Q Consensus 255 C~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK 310 (594)
-.|||.||..| ..| +. .....||.|+.+|..
T Consensus 348 lpCGH~FC~~Ci~~w------------l~-------------~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 348 EPCGHLMCTSCLTSW------------QE-------------SEGQGCPFCRCEIKG 379 (389)
T ss_dssp ETTCCEECHHHHHHH------------HH-------------HTCSBCTTTCCBCCE
T ss_pred eCCCChhhHHHHHHH------------Hh-------------cCCCCCCCCCCccCC
Confidence 38999999999 433 21 123789999998874
No 173
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=57.79 E-value=2.9 Score=35.23 Aligned_cols=37 Identities=24% Similarity=0.465 Sum_probs=23.6
Q ss_pred cCCccccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceeecCC
Q 007671 256 RCSYSFCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQG 313 (594)
Q Consensus 256 ~C~~~fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK~~G 313 (594)
.|+|.||..| ..| +..... .....||-|+..+.+..|
T Consensus 60 ~C~H~Fh~~Ci~~w------------l~~~~~---------~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 60 KCSHAFHLLCLLAM------------YCNGNK---------DGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SSCCEECHHHHHHH------------HHHTCC---------SSCCBCTTTCCBSSSCSS
T ss_pred CCCCcccHHHHHHH------------HHcccC---------CCCCcCCCCCCccCCCCC
Confidence 7999999999 443 211000 012689999998875433
No 174
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=57.03 E-value=2 Score=34.81 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=24.4
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
-.||-|...+. +.++-. .|||.||..|+..|-.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECT-TTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECC-CCCCHHHHHHHHHHHH
Confidence 57999987665 234432 3999999999988853
No 175
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=56.52 E-value=19 Score=24.69 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhh
Q 007671 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (594)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (594)
+.|.++.+ +|.+...|...|+..+||++...+-.+.
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45667766 5899999999999999999988775553
No 176
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=56.22 E-value=4.1 Score=32.47 Aligned_cols=27 Identities=22% Similarity=0.424 Sum_probs=24.6
Q ss_pred CCCCCC-CcceeecCCCCcccccCCCcceeeecccc
Q 007671 299 KPCPRC-KRPIEKNQGCMHMTCTPPCKFEFCWLCLG 333 (594)
Q Consensus 299 K~CPkC-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (594)
..||.| +.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 46 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCV-SDDQLICALCKL 46 (84)
T ss_dssp CCCSSCSSSCCC-------EEET-TTTEEECHHHHH
T ss_pred CcCcCcCCcccc-------EEcC-CCCceEcccCcC
Confidence 579999 68999 9999 899999999975
No 177
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.13 E-value=2.7 Score=31.97 Aligned_cols=31 Identities=32% Similarity=0.896 Sum_probs=24.5
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
..||-|...+.. +. . +|+|.||+.|...|..
T Consensus 16 ~~C~IC~~~~~~------~~-~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 16 EECCICMDGRAD------LI-L-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCSSSCCSCCS------EE-E-TTTEEECHHHHHHSSC
T ss_pred CCCeeCCcCccC------cc-c-CCCCcccHHHHHHHHH
Confidence 679999887663 33 3 5999999999998865
No 178
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=55.78 E-value=2.3 Score=31.51 Aligned_cols=39 Identities=23% Similarity=0.455 Sum_probs=26.5
Q ss_pred CCCCCCCcceeecC-CCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQ-GCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~-GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
..||-|...+.... +=..+.-. .|||.||..|...|-..
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc
Confidence 57888888776431 11223444 59999999999988654
No 179
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=55.60 E-value=24 Score=25.11 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhh
Q 007671 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (594)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (594)
.+.|.++.+. |.+...|...|+..+||++...+-.+.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3455566544 899999999999999999998876654
No 180
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=55.50 E-value=26 Score=26.03 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhh
Q 007671 77 QRQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (594)
Q Consensus 77 ~~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (594)
..+.+.|..++...+++...+...|...+||-++.+..|..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 46778999999999999999999999999999998887754
No 181
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=55.42 E-value=8.4 Score=37.54 Aligned_cols=28 Identities=0% Similarity=-0.244 Sum_probs=17.6
Q ss_pred CcccCCCCCCCCeeeeecCCCCceeeccCCccccccc
Q 007671 229 KTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNV 265 (594)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C 265 (594)
....||- |..++. ..|+-.||++||..|
T Consensus 207 ~~~~c~i--~~~~~~-------dPv~~~~gh~f~~~~ 234 (281)
T 2c2l_A 207 DYLCGKI--SFELMR-------EPCITPSGITYDRKD 234 (281)
T ss_dssp STTBCTT--TCSBCS-------SEEECSSCCEEETTH
T ss_pred cccCCcC--cCCHhc-------CCeECCCCCEECHHH
Confidence 3456774 654331 224447999999999
No 182
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=53.36 E-value=32 Score=25.66 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHh
Q 007671 78 RQEEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWF 116 (594)
Q Consensus 78 ~~~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~ 116 (594)
.+.+.|..++...+++..-+...|...+||-++.+..|.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~ 44 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFT 44 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677889999999999999999999999999999888764
No 183
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=53.02 E-value=6.9 Score=29.84 Aligned_cols=28 Identities=25% Similarity=0.770 Sum_probs=21.8
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCcceeeecc
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 331 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C 331 (594)
..+|..|++.+... | +.|+ |+..||-.=
T Consensus 15 ~~rC~~C~kkvgl~-~---f~Cr--Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT-G---FMCR--CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT-C---EECS--SSCEECTTT
T ss_pred CCcChhhCCccCcc-C---EEee--cCCEecccc
Confidence 37899999987743 2 6797 999999753
No 184
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=51.66 E-value=22 Score=27.83 Aligned_cols=35 Identities=6% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhh
Q 007671 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (594)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (594)
.|.++.+ ++.+...|...|+..+||++...+.++.
T Consensus 32 ~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 32 QIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4555555 5899999999999999999999887664
No 185
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=51.37 E-value=3.8 Score=34.68 Aligned_cols=33 Identities=24% Similarity=0.635 Sum_probs=26.2
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDH 338 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h 338 (594)
-.||-|...+.. .++ . .|||.||+.|...|-..
T Consensus 24 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVE-T-SCKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCSS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEE-c-CCCCcccHHHHHHHHhH
Confidence 689999988762 344 3 59999999999988654
No 186
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=51.25 E-value=7.7 Score=30.00 Aligned_cols=28 Identities=25% Similarity=0.611 Sum_probs=20.5
Q ss_pred CCCCCCCcceeecCCCCcccccCCCccee
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
-.||.|+.+++-..+=..+.|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICK-GDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5799999999876554557787 565554
No 187
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=50.71 E-value=8.2 Score=30.02 Aligned_cols=28 Identities=25% Similarity=0.628 Sum_probs=21.2
Q ss_pred CCCCCCCcceeecCCCCcccccCCCccee
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
-.||.|+.+++-+.+=..+.|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCN-ADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcC-CCCcee
Confidence 5899999999876655567887 676555
No 188
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=50.38 E-value=7 Score=27.65 Aligned_cols=31 Identities=26% Similarity=0.574 Sum_probs=25.7
Q ss_pred CCCCCCccccCCCCccCCCccccccccCCCC
Q 007671 564 NIDDSSHWYCDQCTYANVNSATACAMCQHSR 594 (594)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 594 (594)
+......|.|-.|.--|+.....|.-|..-|
T Consensus 7 di~~~D~WkC~~C~~~N~Pl~r~C~rCw~LR 37 (46)
T 2c6a_A 7 EISLADYWKCTSCNEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp SSCGGGCEECTTTCCEECSSCSSCTTTCCCC
T ss_pred ccCccceEecccccccCCCccchhhHHHhhc
Confidence 4445567999999999999999999997543
No 189
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.36 E-value=4 Score=31.38 Aligned_cols=37 Identities=24% Similarity=0.617 Sum_probs=26.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccccccCC
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
..||-|...+..... +.-. .|+|.||+.|+..|-...
T Consensus 16 ~~C~IC~~~~~~~~~---~~~~-~C~H~f~~~Ci~~~~~~~ 52 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDE---LGIC-PCKHAFHRKCLIKWLEVR 52 (74)
T ss_dssp CBCSSSCCBCCSSSC---EEEE-TTTEEEEHHHHHHHHHHC
T ss_pred CCCcCCCcccCCCCc---EEEc-CCCCEecHHHHHHHHHcC
Confidence 679999888764322 2222 499999999999986543
No 190
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=50.18 E-value=7.5 Score=29.65 Aligned_cols=28 Identities=21% Similarity=0.615 Sum_probs=21.4
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCcceeeecc
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLC 331 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C 331 (594)
..+|..|++.+... -+.|+ |+..||-.=
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCK--CGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECT--TSCEECSSS
T ss_pred CCcChhhCCccccc----CeEee--cCCEecccC
Confidence 36899999987733 26797 999999753
No 191
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=49.56 E-value=11 Score=32.16 Aligned_cols=29 Identities=14% Similarity=0.522 Sum_probs=23.1
Q ss_pred CCCCCCCCcceeec----CCCCcccccCCCccee
Q 007671 298 SKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 327 (594)
Q Consensus 298 tK~CPkC~~~IEK~----~GCnhm~C~~~C~~~F 327 (594)
.+.||.|+.++.-. .|.+.+.|+ +|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~-~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACR-NCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECS-SSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECC-CCCCeE
Confidence 47899999887532 368899999 899876
No 192
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=49.38 E-value=9.2 Score=29.63 Aligned_cols=28 Identities=18% Similarity=0.515 Sum_probs=20.5
Q ss_pred CCCCCCCcceeecCCCCcccccCCCccee
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
-.||.|+.+++-..+=..+.|. .||..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISK-GAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEET-TTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 6899999999866554557787 566554
No 193
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=48.10 E-value=9.1 Score=33.69 Aligned_cols=30 Identities=13% Similarity=0.451 Sum_probs=23.0
Q ss_pred cCCCCCCCCcceeec----CCCCcccccCCCccee
Q 007671 297 NSKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 327 (594)
Q Consensus 297 ntK~CPkC~~~IEK~----~GCnhm~C~~~C~~~F 327 (594)
..+.||.|+.++--. .|.+.+.|+ +|++.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Cr-tCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCS-SSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECC-CCCCcE
Confidence 358999999877422 368899999 898865
No 194
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.58 E-value=31 Score=25.88 Aligned_cols=37 Identities=27% Similarity=0.216 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhcH
Q 007671 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (594)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d~ 119 (594)
.|.++.+ ++.+...|...|+..+||++...+-++...
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~~ 48 (63)
T 2dak_A 12 CVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSHI 48 (63)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4555555 599999999999999999999888776543
No 195
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=46.71 E-value=8.4 Score=31.24 Aligned_cols=34 Identities=29% Similarity=0.627 Sum_probs=26.0
Q ss_pred CcccCCCCCCCCeeeeecCCCCceeec-cCCccccccc--cccc
Q 007671 229 KTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNV--KEAH 269 (594)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C--~~~H 269 (594)
....|..++|.... ...+.| .|+..||..| .+.|
T Consensus 24 ~~~~C~~~~Ck~~~-------~l~f~C~~C~~~FC~~HR~~e~H 60 (86)
T 1wfe_A 24 KSYSCSFKGCTDVE-------LVAVICPYCEKNFCLRHRHQSDH 60 (86)
T ss_dssp CCEECCSTTCCCEE-------SSCEECTTTCCEECGGGCSTGGG
T ss_pred CCCCCCCcCCCCCC-------ccceECCCCCcccccccCCccCC
Confidence 34579999998652 245799 7999999999 5667
No 196
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=45.90 E-value=9.1 Score=30.02 Aligned_cols=26 Identities=27% Similarity=0.741 Sum_probs=21.3
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeec
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWL 330 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~ 330 (594)
.+|..|++.+...+ +.|+ |+..||-.
T Consensus 26 nRC~~CrKkvgL~g----f~Cr--Cg~~FCs~ 51 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCR--CGNLFCGL 51 (74)
T ss_dssp TBCSSSCCBCGGGC----EECT--TSCEECSS
T ss_pred CcChhhCCcccccC----eecC--CCCEechh
Confidence 58999999888542 6798 99999975
No 197
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=45.87 E-value=16 Score=32.88 Aligned_cols=36 Identities=31% Similarity=0.710 Sum_probs=25.3
Q ss_pred cCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceeecCCCCcccccCCCcc
Q 007671 269 HRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEKNQGCMHMTCTPPCKF 325 (594)
Q Consensus 269 H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK~~GCnhm~C~~~C~~ 325 (594)
=+|..|..+.+-. . + |.||+|.-+++ ++-|+..||+
T Consensus 96 lRPAicdkAR~KQ------q----~-----k~CpnC~g~L~------~~~Crgh~Gy 131 (174)
T 1odh_A 96 LRPAICDKARQKQ------Q----R-----KSCPNCNGPLK------LIPCRGHGGF 131 (174)
T ss_dssp ECCCSSHHHHHHH------H----H-----SBCSSSCCBEE------EECCCTBTTB
T ss_pred echHHHHHHHHHh------h----c-----CCCCCCCccee------eEeccCcCCC
Confidence 4688898765411 1 1 99999999998 4888755553
No 198
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=44.55 E-value=7.9 Score=30.99 Aligned_cols=29 Identities=31% Similarity=0.674 Sum_probs=22.7
Q ss_pred CCCCCCCcceeecCCCCcccccCCCc--ceeeeccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCK--FEFCWLCLGQWS 336 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~--~~FCw~C~~~~~ 336 (594)
-.||.|+.++++ |. .|| ..||-.|++..+
T Consensus 32 afCPeCgq~Le~--------lk-ACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 32 ALCPDCRQPLQV--------LK-ACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp EECSSSCSCCCE--------EE-ETTEEEECCTTTTCCCC
T ss_pred ccCcchhhHHHH--------HH-hcCCcCeeeccCCCEee
Confidence 379999999996 65 576 578888877654
No 199
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=43.78 E-value=12 Score=28.85 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=21.1
Q ss_pred CCCCCCCcceeecCCCCcccccCCCccee
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
-.||.|+.+++-...=+.+.|. .|+..|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~-~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNE-RLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcC-CCCccc
Confidence 5899999999876554567887 676655
No 200
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.77 E-value=7.8 Score=30.60 Aligned_cols=18 Identities=22% Similarity=0.757 Sum_probs=15.2
Q ss_pred CCcceeeeccccccccCC
Q 007671 322 PCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 322 ~C~~~FCw~C~~~~~~h~ 339 (594)
.|+|.|+..|+..|-..+
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC
T ss_pred CCCCccChHHHHHHHHhC
Confidence 499999999999997554
No 201
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=43.70 E-value=35 Score=27.38 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhcH
Q 007671 83 ITRISTVLSISKVAASILLRFYNWSVSKVHDEWFADE 119 (594)
Q Consensus 83 i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d~ 119 (594)
|.++.+ +|.+...|+..|+..+||+++..+-.|.+.
T Consensus 33 I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~sh~ 68 (83)
T 1veg_A 33 INQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAHHG 68 (83)
T ss_dssp HHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 344443 489999999999999999999988776643
No 202
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=42.15 E-value=47 Score=26.91 Aligned_cols=50 Identities=28% Similarity=0.669 Sum_probs=34.4
Q ss_pred CCccccccccccccCC---Cc-ccc-cCCCcccHhhHHHHHHhhccCCCCccccccCCCcCCCcc
Q 007671 139 GEEMTCGICFENYPSD---RL-LAA-ACGHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAV 198 (594)
Q Consensus 139 ~~~~~C~IC~e~~~~~---~~-v~l-~CgH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v 198 (594)
.....|.||-+.+..+ ++ +.. .|+-..|+.|+.--. ++| .-.|| +|+..+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG----~q~Cp--qCktrY 68 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REG----TQNCP--QCKTRY 68 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTS----CSSCT--TTCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hcc----Ccccc--ccCCcc
Confidence 3456899999986432 23 333 388899999987543 344 46899 798765
No 203
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.89 E-value=15 Score=29.66 Aligned_cols=28 Identities=25% Similarity=0.578 Sum_probs=21.4
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCcceeeec
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWL 330 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~ 330 (594)
..+|..|++.+-... -+.|+ |+..||-.
T Consensus 25 ~~rC~~C~kkvgl~~---~f~Cr--Cg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKTGLAT---SFECR--CGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBCSSSS---CEECT--TCCEECTT
T ss_pred CccchhhCCeecccC---CeEcC--CCCEeccc
Confidence 368999998766432 27897 99999975
No 204
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.56 E-value=48 Score=24.98 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhh
Q 007671 81 EDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFA 117 (594)
Q Consensus 81 ~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~ 117 (594)
+.|.++.+ ++.+...|...|+..+||++...+-.+.
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34555554 6899999999999999999988876654
No 205
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=38.00 E-value=13 Score=29.62 Aligned_cols=41 Identities=20% Similarity=0.643 Sum_probs=26.2
Q ss_pred HHHHHhc-CCCCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007671 291 MNWILAN-SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 334 (594)
Q Consensus 291 ~~wi~~n-tK~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (594)
..|+... ...|+.|+...-- .--.-.|+ .||.-||..|...
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR-~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSI--SRRKHHCR-NCGHIFCNTCSSN 52 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBT--TBCCEECT-TTCCEECSGGGCE
T ss_pred CccccCccCCcccCcCCcccC--ccccccCC-CCCCEEChHHhCC
Confidence 3576543 4689999987651 11224688 8999999999753
No 206
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=37.91 E-value=64 Score=23.24 Aligned_cols=40 Identities=8% Similarity=0.157 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHhcCCChHHHHHHHhhc
Q 007671 78 RQEEDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 78 ~~~~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~e~~~~d 118 (594)
...+.|.++.+. |. +...+...|+..+||++..++..+..
T Consensus 10 ~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 10 RFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 345566777664 77 89999999999999999998876653
No 207
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.84 E-value=14 Score=29.04 Aligned_cols=27 Identities=22% Similarity=0.705 Sum_probs=21.3
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCcceeeec
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWL 330 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~ 330 (594)
..+|..|++.+... -+.|+ |+..||-.
T Consensus 25 ~~RC~~C~kkvgL~----~f~Cr--Cg~~FCs~ 51 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT----GFKCR--CGSTFCGT 51 (74)
T ss_dssp CCBCSSSCCBCTTT----CEECT--TSCEECTT
T ss_pred CccchhhcCccccc----ceEec--cCCEeccc
Confidence 37899999887754 27897 99999965
No 208
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.63 E-value=1.6e+02 Score=31.44 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 007671 455 RQFFEYLQGEAESGLERLHQCAEKELQIYLN 485 (594)
Q Consensus 455 ~~~fe~~Q~~~e~~~e~L~~~le~~~~~~~~ 485 (594)
...+.-||..|+.++.++ +.||.+|..-++
T Consensus 130 lsnIrvLQsnLedq~~kI-QRLEvDIdiqir 159 (562)
T 3ghg_A 130 VQHIQLLQKNVRAQLVDM-KRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 345566666666666665 457777776553
No 209
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=37.61 E-value=12 Score=32.25 Aligned_cols=29 Identities=14% Similarity=0.461 Sum_probs=22.7
Q ss_pred CCCCCCCCcceeec----CCCCcccccCCCccee
Q 007671 298 SKPCPRCKRPIEKN----QGCMHMTCTPPCKFEF 327 (594)
Q Consensus 298 tK~CPkC~~~IEK~----~GCnhm~C~~~C~~~F 327 (594)
.+-||.|+.++.-. .+-+.+.|+ .|++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~-~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECS-SSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECC-cCCCee
Confidence 37899999877622 667889998 898866
No 210
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=37.33 E-value=23 Score=27.82 Aligned_cols=32 Identities=28% Similarity=0.666 Sum_probs=24.5
Q ss_pred ccCCCCCCCCeeeeecCCCCceeec-cCCccccccc--cccc
Q 007671 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNV--KEAH 269 (594)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C--~~~H 269 (594)
..|..++|... ....+.| .|+..||..| .+.|
T Consensus 15 ~~Cs~~~C~~~-------dflpf~C~~C~~~FC~~HR~~e~H 49 (75)
T 1wys_A 15 QHCQVQHCRQR-------DFLPFVCDGCSGIFCLEHRSKDSH 49 (75)
T ss_dssp CCCSCTTTCCC-------SCCCEECTTTCCEECSTTCSSGGG
T ss_pred CCcCcccCCCc-------cceeeECcccCcCcCcccCCcccc
Confidence 57888888753 3345799 7999999999 5666
No 211
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=37.13 E-value=47 Score=23.90 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCC-CHHHHHHHHHhcCCChHHHHHHHhhc
Q 007671 81 EDITRISTVLSI-SKVAASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 81 ~~i~~v~~~l~i-~~~~a~~LL~~~~W~~~~l~e~~~~d 118 (594)
..|.++.+ +|. +...+...|+..+||++..++..+.+
T Consensus 14 ~~l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 14 QQLEQLSA-MGFLNREANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35566655 478 88889999999999999998876653
No 212
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.77 E-value=6.3 Score=32.17 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=25.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
-.||-|..++. +.++-. .|||-||-.|...|-.
T Consensus 8 ~~CPI~~~~~~-----dPV~~~-~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNK-VCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCS-----SEEEES-SSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcC-CCCCeecHHHHHHHHH
Confidence 46999998777 456653 4999999999988854
No 213
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=36.46 E-value=49 Score=30.47 Aligned_cols=29 Identities=0% Similarity=-0.246 Sum_probs=18.6
Q ss_pred CCcccCCCCCCCCeeeeecCCCCceeeccCCccccccc
Q 007671 228 RKTKWCPAPGCDYAVDFVVGSGNYDVTCRCSYSFCWNV 265 (594)
Q Consensus 228 ~~~~~CP~p~C~~~i~~~~~~~~~~v~C~C~~~fC~~C 265 (594)
+....||- |..++. ..|.-.||++||..|
T Consensus 104 p~~f~CPI--~~elm~-------DPV~~~~Ghtfer~~ 132 (179)
T 2f42_A 104 PDYLCGKI--SFELMR-------EPCITPSGITYDRKD 132 (179)
T ss_dssp CGGGBCTT--TCSBCS-------SEEECTTSCEEEHHH
T ss_pred cHhhcccC--ccccCC-------CCeECCCCCEECHHH
Confidence 34567885 654432 123337999999988
No 214
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=35.89 E-value=15 Score=27.56 Aligned_cols=34 Identities=24% Similarity=0.620 Sum_probs=23.3
Q ss_pred cCCCCCCCCeeeeecCCCCceeec-cCCccccccc-ccccCCC
Q 007671 232 WCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNV-KEAHRPV 272 (594)
Q Consensus 232 ~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C-~~~H~p~ 272 (594)
.|- +|...+. ......| .|+..||..| .=.|..+
T Consensus 17 ~C~--~C~~~~~-----~~~~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 17 FCY--GCQGELK-----DQHVYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp EET--TTTEECT-----TSEEECCTTTTCCBCHHHHHTTTTTS
T ss_pred ccc--ccCcccC-----CCccEECCccCcCcccchhHHHHhhc
Confidence 575 4775541 1123579 9999999999 8888653
No 215
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=35.63 E-value=3.2e+02 Score=26.62 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 007671 457 FFEYLQGEAESGLERLHQCAEKELQIY 483 (594)
Q Consensus 457 ~fe~~Q~~~e~~~e~L~~~le~~~~~~ 483 (594)
.++.+...++..++.|...|+..+.+|
T Consensus 155 ~~e~L~~ql~~~a~~L~~~l~~~~eeL 181 (273)
T 3s84_A 155 QLEGLTFQMKKNAEELKARISASAEEL 181 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555554444433
No 216
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=34.71 E-value=24 Score=36.11 Aligned_cols=25 Identities=24% Similarity=0.646 Sum_probs=21.1
Q ss_pred cCCcc-ccccc-ccccCCCCchhHHHHHHhhhhhHHhHHHHHhcCCCCCCCCcceee
Q 007671 256 RCSYS-FCWNV-KEAHRPVDCDTVAKWVLKNSAESENMNWILANSKPCPRCKRPIEK 310 (594)
Q Consensus 256 ~C~~~-fC~~C-~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntK~CPkC~~~IEK 310 (594)
.|||. ||..| ..+ +.||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 89999 99999 432 579999999974
No 217
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.95 E-value=16 Score=28.30 Aligned_cols=26 Identities=15% Similarity=0.510 Sum_probs=18.3
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcce
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFE 326 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~ 326 (594)
-.|+.|+..++...+ ..+.|. .||+.
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp-~CG~R 54 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCK-DCGHR 54 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCS-SSCCC
T ss_pred EECCCCCCcceeCCC-CCccCC-CCCce
Confidence 479999999776533 457787 67663
No 218
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=33.76 E-value=8.7 Score=33.01 Aligned_cols=26 Identities=19% Similarity=0.650 Sum_probs=0.0
Q ss_pred CCCCcccccCCCcceeeeccccccccCC
Q 007671 312 QGCMHMTCTPPCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 312 ~GCnhm~C~~~C~~~FCw~C~~~~~~h~ 339 (594)
+.|.-+.-. |+|.|+..|...|-...
T Consensus 75 ~~~~v~~~~--C~H~FH~~CI~~Wl~~~ 100 (117)
T 4a0k_B 75 EECTVAWGV--CNHAFHFHCISRWLKTR 100 (117)
T ss_dssp ----------------------------
T ss_pred cccccccCC--cCceEcHHHHHHHHHcC
Confidence 345555554 99999999999996543
No 219
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=32.08 E-value=29 Score=25.70 Aligned_cols=25 Identities=20% Similarity=0.497 Sum_probs=15.4
Q ss_pred CCCCCCCc-ceeecCCCCcccccCCCc
Q 007671 299 KPCPRCKR-PIEKNQGCMHMTCTPPCK 324 (594)
Q Consensus 299 K~CPkC~~-~IEK~~GCnhm~C~~~C~ 324 (594)
..||.|+. .|.....=.-+.|. .||
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~-~CG 37 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICP-ECG 37 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECT-TTC
T ss_pred ccCcCCCCCceeEeCCCCeEEeC-CCC
Confidence 58999976 56544333346666 454
No 220
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.93 E-value=18 Score=27.88 Aligned_cols=28 Identities=32% Similarity=0.807 Sum_probs=20.6
Q ss_pred CCCCCCCCcceeecC--CCCcccccCCCcceeeec
Q 007671 298 SKPCPRCKRPIEKNQ--GCMHMTCTPPCKFEFCWL 330 (594)
Q Consensus 298 tK~CPkC~~~IEK~~--GCnhm~C~~~C~~~FCw~ 330 (594)
..+|..|++.+-..+ | +.|+ |+..||-.
T Consensus 15 ~~rC~~C~kk~gL~~~eg---f~Cr--Cg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQQEL---GSCR--CGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHHHHH---HCCS--SSCCCCTT
T ss_pred CCcchhhCCeecccccCc---eEec--CCCEehhc
Confidence 368999998887321 2 4697 99999975
No 221
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=31.79 E-value=21 Score=32.83 Aligned_cols=24 Identities=21% Similarity=0.593 Sum_probs=20.4
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKF 325 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~ 325 (594)
-.||+|+.++.+.+ ++|.|. .||.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp-~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCP-ECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECS-SSCC
T ss_pred ecccccCCceEECC--CEEECC-CCCC
Confidence 47999999998876 999998 6764
No 222
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.32 E-value=3.3e+02 Score=28.63 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcccCccchhhHHHHHHHHHHHHHhHH
Q 007671 391 RQKALADLQQMQTVHLEKLSDVQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKRQFFEYLQGEAESGLE 470 (594)
Q Consensus 391 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~a~~~l~~~r~~L~~sy~~~yy~~~~~~~~~~~fe~~Q~~~e~~~e 470 (594)
++.++.+-.+-+...+.+|.+. +.-+......+..--+.+ .+++...|+++...=.
T Consensus 52 LqglL~kqerdv~~rI~kLkn~-------L~~~s~s~~~s~~y~~~~-----------------~~~lk~~~~q~~dndn 107 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQ-------LADSQNKYKTSNRVIVET-----------------INILKPGLEGAQQLDE 107 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHTTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHH-------HHHHHhhcchHHHHHHHH-----------------HHHHHHHHhhhccchh
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Q 007671 471 RLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDTH 528 (594)
Q Consensus 471 ~L~~~le~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~le~gl~~~~~~ 528 (594)
.+.+..+ +++.+++.|...+.+.+ ..++.|...|.++.+.
T Consensus 108 ~~~e~S~-----------------eLe~ri~yIK~kVd~qi-~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 108 NYGHVST-----------------ELRRRIVTLKQRVATQV-NRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHH-----------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.96 E-value=2.3e+02 Score=31.03 Aligned_cols=70 Identities=19% Similarity=0.255 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Q 007671 454 KRQFFEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDTH 528 (594)
Q Consensus 454 ~~~~fe~~Q~~~e~~~e~L~~~le~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~le~gl~~~~~~ 528 (594)
..+.++.+++..+..+..|.+.+|++...++... =.-+..+|..-...++.-|++=.+.|.+.+.+|...
T Consensus 513 ~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 513 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ-----ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566788888888888888888888887776421 113445566656667777888888899888888553
No 224
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.74 E-value=24 Score=30.50 Aligned_cols=40 Identities=20% Similarity=0.555 Sum_probs=27.7
Q ss_pred HHHHh-cCCCCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007671 292 NWILA-NSKPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 334 (594)
Q Consensus 292 ~wi~~-ntK~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (594)
.|+.. ....|+.|+.+.-- .--.-.|+ .||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR-~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSV--TVRRHHCR-QCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCS--SSCCEECT-TTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCcccc--ccccccCC-CCCeEEChHHhCC
Confidence 45543 25689999987641 11235798 8999999999753
No 225
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=30.42 E-value=1.2e+02 Score=27.97 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 007671 493 FNEFRTKLAGLTSVTRNYFENLVRALENGL 522 (594)
Q Consensus 493 ~~~~~~~l~~l~~~~~~~~~~l~~~le~gl 522 (594)
+.++|.+|.-.+.-++.....-++.|...|
T Consensus 130 ~Eelr~~L~Py~eelr~kl~~~~eeLr~~l 159 (191)
T 1nfn_A 130 TEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 445565555554444444444444444433
No 226
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=30.39 E-value=20 Score=35.30 Aligned_cols=25 Identities=40% Similarity=1.039 Sum_probs=17.7
Q ss_pred CCCCCCCcceeec--CCCCcccccCCCc
Q 007671 299 KPCPRCKRPIEKN--QGCMHMTCTPPCK 324 (594)
Q Consensus 299 K~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (594)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP-TCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT-TTT
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 8999999999974 454445554 454
No 227
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=30.37 E-value=18 Score=35.79 Aligned_cols=25 Identities=32% Similarity=0.697 Sum_probs=18.4
Q ss_pred CCCCCCCcceeec--CCCCcccccCCCc
Q 007671 299 KPCPRCKRPIEKN--QGCMHMTCTPPCK 324 (594)
Q Consensus 299 K~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (594)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP-VCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTS
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999974 555555665 565
No 228
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=29.65 E-value=18 Score=35.80 Aligned_cols=25 Identities=44% Similarity=0.986 Sum_probs=18.3
Q ss_pred CCCCCCCcceeec--CCCCcccccCCCc
Q 007671 299 KPCPRCKRPIEKN--QGCMHMTCTPPCK 324 (594)
Q Consensus 299 K~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (594)
++||.|+.+|+|. +|=.-.+|. .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCP-RCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECC-CCC
Confidence 7999999999973 565555665 564
No 229
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.37 E-value=32 Score=29.12 Aligned_cols=31 Identities=19% Similarity=0.476 Sum_probs=21.5
Q ss_pred CcccCCCCCCCCeeeeecCC--CCceeec-cCCccc
Q 007671 229 KTKWCPAPGCDYAVDFVVGS--GNYDVTC-RCSYSF 261 (594)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~~--~~~~v~C-~C~~~f 261 (594)
.+.+|| .|++++.+..+. +...+.| .|++.+
T Consensus 3 ~m~FCp--~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCI--ECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCS--SSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCc--CCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 367999 599998776432 3345688 888764
No 230
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=29.23 E-value=17 Score=30.51 Aligned_cols=18 Identities=22% Similarity=0.839 Sum_probs=14.9
Q ss_pred CCcceeeeccccccccCC
Q 007671 322 PCKFEFCWLCLGQWSDHG 339 (594)
Q Consensus 322 ~C~~~FCw~C~~~~~~h~ 339 (594)
.|+|.|+..|...|-..+
T Consensus 72 ~C~H~FH~~Ci~~Wl~~~ 89 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKTR 89 (106)
T ss_dssp TTSCEEEHHHHHHHHTTC
T ss_pred ccCcEECHHHHHHHHHcC
Confidence 499999999999996543
No 231
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=29.16 E-value=35 Score=27.59 Aligned_cols=37 Identities=32% Similarity=0.682 Sum_probs=25.4
Q ss_pred CCCCccccccccccccCC--CcccccCCCcccHhhHHHH
Q 007671 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (594)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~v~l~CgH~fC~~C~~~y 173 (594)
++.....|.+|...|... ...--.||+.||..|....
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 344456799999887431 1223469999999997654
No 232
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.03 E-value=19 Score=35.47 Aligned_cols=25 Identities=28% Similarity=0.757 Sum_probs=18.1
Q ss_pred CCCCCCCcceeec--CCCCcccccCCCc
Q 007671 299 KPCPRCKRPIEKN--QGCMHMTCTPPCK 324 (594)
Q Consensus 299 K~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (594)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCR-QCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999974 554445565 554
No 233
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=29.02 E-value=91 Score=24.12 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhc
Q 007671 83 ITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 83 i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d 118 (594)
|.++.+ +|.+...|+..|+..+||++...+-.+.+
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 334433 58999999999999999999988776654
No 234
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=28.44 E-value=27 Score=30.09 Aligned_cols=33 Identities=30% Similarity=0.736 Sum_probs=24.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 334 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (594)
..|..|+...--. =-.-.|+ .||.-||..|...
T Consensus 20 ~~C~~C~~~Fs~~--~RkHHCR-~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCKSCGAHFANT--ARKQTCL-DCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCTTTCCCCSSG--GGCEECT-TTCCEECGGGEEC
T ss_pred CcccCcCCccccc--cccccCC-CCCCeeCHHHhCC
Confidence 6899998876411 1225698 8999999999753
No 235
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=28.43 E-value=19 Score=35.29 Aligned_cols=25 Identities=36% Similarity=0.781 Sum_probs=18.5
Q ss_pred CCCCCCCcceeec--CCCCcccccCCCc
Q 007671 299 KPCPRCKRPIEKN--QGCMHMTCTPPCK 324 (594)
Q Consensus 299 K~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (594)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCP-GCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECC-CCC
Confidence 7999999999974 555555665 564
No 236
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=28.37 E-value=28 Score=29.94 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=22.0
Q ss_pred CcccCCCCCCCCeeeeecC--CCCceeec-cCCccc
Q 007671 229 KTKWCPAPGCDYAVDFVVG--SGNYDVTC-RCSYSF 261 (594)
Q Consensus 229 ~~~~CP~p~C~~~i~~~~~--~~~~~v~C-~C~~~f 261 (594)
.+.+|| .|++++....+ .....+.| .|++.+
T Consensus 3 ~~~FCp--~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCR--DCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCS--SSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCccc--ccCccCcccccCcCCCCEEECCcCCCee
Confidence 367999 49999887643 33456789 898754
No 237
>2lem_A Apolipoprotein A-I; lipid transport; NMR {Mus musculus}
Probab=28.35 E-value=1.9e+02 Score=27.03 Aligned_cols=68 Identities=12% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCC-CcHH-HHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Q 007671 459 EYLQGEAESGLERLHQCAEKELQIYLNADGPS-KDFN-EFRTKLAGLTSVTRNYFENLVRALENGLSDVD 526 (594)
Q Consensus 459 e~~Q~~~e~~~e~L~~~le~~~~~~~~~~~~~-~~~~-~~~~~l~~l~~~~~~~~~~l~~~le~gl~~~~ 526 (594)
+.....+...++.|...|.+++.++...-.|. ..|. .+...+..+..-+.-|.+.|...+...+.+++
T Consensus 68 ~e~~~~l~~~~~~lr~~l~kd~ee~r~~l~py~~el~~~~~~~~e~lr~~L~Py~~el~~~~~~~~e~Lr 137 (216)
T 2lem_A 68 RDFWDNLEKETDWVRQEMNKDLEEVKQKVQPYLDEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQ 137 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCSCCSSC
T ss_pred HHHHHHHhHHHHHHHHHHhccHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444555555666666666666665555554 2221 22334444444444555555555555555553
No 238
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=27.85 E-value=40 Score=32.41 Aligned_cols=36 Identities=25% Similarity=0.744 Sum_probs=0.0
Q ss_pred hHHHHHhcCCCCCCCCc-ceeecCCCCc---ccccCCCccee
Q 007671 290 NMNWILANSKPCPRCKR-PIEKNQGCMH---MTCTPPCKFEF 327 (594)
Q Consensus 290 ~~~wi~~ntK~CPkC~~-~IEK~~GCnh---m~C~~~C~~~F 327 (594)
+..|+..| -.||.|+. +|.+-+.=.. .+|. .|+.+|
T Consensus 27 TE~Wv~~n-~yCPnCG~~~l~~f~nN~PVaDF~C~-~C~Eey 66 (257)
T 4esj_A 27 TEDWVYRQ-SYCPNCGNNPLNHFENNRPVADFYCN-HCSEEF 66 (257)
T ss_dssp HHHHHHHH-CCCTTTCCSSCEEC----CCCEEECT-TTCCEE
T ss_pred hHHHHHHC-CcCCCCCChhhhhccCCCcccccccC-Ccchhh
No 239
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.01 E-value=50 Score=24.05 Aligned_cols=37 Identities=5% Similarity=-0.018 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCHHH-HHHHHHhcCCChHHHHHHHhhc
Q 007671 81 EDITRISTVLSISKVA-ASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 81 ~~i~~v~~~l~i~~~~-a~~LL~~~~W~~~~l~e~~~~d 118 (594)
+.|.++.+. +.+... ++..|+..+||+++.++..|..
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 345556554 776554 5889999999999999887753
No 240
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=26.95 E-value=1.2e+02 Score=22.43 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCCC-HHHHHHHHHhcCCChHHHHHHHhhc
Q 007671 77 QRQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 77 ~~~~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~e~~~~d 118 (594)
....+.|.++.+. +.+ ...+...|+..+||+++.++..+..
T Consensus 15 ~~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3445567777665 764 6677889999999999999877654
No 241
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.90 E-value=97 Score=24.66 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhc
Q 007671 82 DITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d 118 (594)
.|.++.+ +|.+...|...|+..+||++...+-.+..
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3455554 59999999999999999999988766653
No 242
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=26.77 E-value=31 Score=27.88 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=23.9
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 334 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (594)
..|+.|+...--. --.-.|+ .||.-||..|...
T Consensus 10 ~~C~~C~~~F~~~--~RrHHCR-~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLF--KKEYGCK-NCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSS--SCEEECS-SSCCEEETTTSCE
T ss_pred CCCcCcCCcccCc--cccccCC-CCCCEEChhHcCC
Confidence 6799998865411 1225698 8999999999753
No 243
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.74 E-value=32 Score=26.06 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=20.0
Q ss_pred CCCCCCCcceeecCCCCcccccCCCccee
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
-.|..|+..++-..+ ..|.|. .||+.+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~-~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCR-ECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCS-SSCCCC
T ss_pred EECCCCCCeeecCCC-CceECC-CCCcEE
Confidence 579999988875544 558887 787765
No 244
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=26.28 E-value=27 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.725 Sum_probs=19.8
Q ss_pred CCCCCCCcc------eeecCCCCcccccCCCccee
Q 007671 299 KPCPRCKRP------IEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 299 K~CPkC~~~------IEK~~GCnhm~C~~~C~~~F 327 (594)
-.||.|+.. |.|..|=-++.|+ .|+..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~-~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCT-VCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEES-SSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcc-cCCCeE
Confidence 579998865 2345666678888 777766
No 245
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=25.68 E-value=55 Score=28.17 Aligned_cols=36 Identities=28% Similarity=0.642 Sum_probs=24.4
Q ss_pred CCCccccccccccccCC--CcccccCCCcccHhhHHHH
Q 007671 138 DGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (594)
Q Consensus 138 ~~~~~~C~IC~e~~~~~--~~v~l~CgH~fC~~C~~~y 173 (594)
......|.+|...|... ...--.||+.||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 33456799999887421 1223369999999997654
No 246
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.50 E-value=1.2e+02 Score=24.26 Aligned_cols=38 Identities=11% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHhcCCChHHHHHHHhhc
Q 007671 80 EEDITRISTVLSISKVAASILLRFYNWSVSKVHDEWFAD 118 (594)
Q Consensus 80 ~~~i~~v~~~l~i~~~~a~~LL~~~~W~~~~l~e~~~~d 118 (594)
.+.|.++.+ ++++...|...|+..+|+++...+-.+..
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 455666666 59999999999999999999988876653
No 247
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.97 E-value=35 Score=25.44 Aligned_cols=36 Identities=33% Similarity=0.743 Sum_probs=27.7
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
-.|+.|.+.=. .+||-|. |. .|+..||-.|++.+.-
T Consensus 10 ~~C~iC~KTKF-ADG~Gh~-C~-yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 10 PTCGICHKTKF-ADGCGHN-CS-YCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCSSSSCSCC-CSSCCEE-BT-TTCCEECTTSEEEEES
T ss_pred chhhhhcccee-ccCCCcc-cc-ccCCeeecccCCEeee
Confidence 57888876422 5788886 55 5999999999998764
No 248
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=24.83 E-value=56 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=21.4
Q ss_pred ccCCCCCCCCeeeeecCCCCceeec-cCCccccc
Q 007671 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCW 263 (594)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~ 263 (594)
+.|| +|.+.-..- +.....|.| .|+...|.
T Consensus 8 VKCp--~C~niq~VF-ShA~tvV~C~~Cg~~L~~ 38 (66)
T 1qxf_A 8 VKCP--DCEHEQVIF-DHPSTIVKCIICGRTVAE 38 (66)
T ss_dssp EECT--TTCCEEEEE-SSCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCceEEE-ecCceEEEcccCCCEEee
Confidence 5788 598764443 345567899 99999885
No 249
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=24.17 E-value=25 Score=34.49 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQWSD 337 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (594)
-.||-|..++. ..++-. .|||.||-.|...|-.
T Consensus 182 l~CPIcl~~f~-----DPVts~-~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISR-KCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp SBCTTTSSBCS-----SEEEES-SSCCEEEHHHHHHHST
T ss_pred eECcCccCccc-----CCeeeC-CCCCcccHHHHHHHHH
Confidence 68999998886 567765 6999999999887643
No 250
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=24.15 E-value=39 Score=30.24 Aligned_cols=32 Identities=22% Similarity=0.519 Sum_probs=0.0
Q ss_pred ccCCCCCCCCeeeeecCCCCceeec-cCCcccccc
Q 007671 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 264 (594)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 264 (594)
+.||++.|+..+....... ...| .|+..+++.
T Consensus 119 ~~c~~~~cg~g~fma~h~~--r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKD--RLYCGKCHSVYKVN 151 (152)
T ss_dssp CBCCSTTSCSSSBEEECSS--CEEESSSSSCCEEC
T ss_pred CcCCCccCCCceEecccCC--CcccCCCceEEEec
No 251
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=23.70 E-value=4e+02 Score=23.86 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 007671 458 FEYLQGEAESGLERLHQCAEKELQIYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDV 525 (594)
Q Consensus 458 fe~~Q~~~e~~~e~L~~~le~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~le~gl~~~ 525 (594)
.+.++..+...+|.|...|+.-+.+|...-.+ .+..+|.+|.-...-.+.....-+.+|..-|..+
T Consensus 97 ~e~Lr~~L~~d~EelR~~l~p~~~el~~~l~~--~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~p~ 162 (165)
T 1gs9_A 97 LQAAQARLGADMEDVRGRLVQYRGEVQAMLGQ--STEELRVRLASHLRKLRKRLLRDADDLQKRLAVY 162 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhh
Confidence 44556666666666666666655555544333 3557888887766666666666666666555444
No 252
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=23.69 E-value=28 Score=28.56 Aligned_cols=47 Identities=26% Similarity=0.562 Sum_probs=33.4
Q ss_pred CccccccccccccCCCcccccC-CCcccHhhHHHHHHhhccCCCCccccccCCCcCCCccchh
Q 007671 140 EEMTCGICFENYPSDRLLAAAC-GHPFCSSCWTGYISTAINDGPGCLMLRCPDPSCGAAVGQD 201 (594)
Q Consensus 140 ~~~~C~IC~e~~~~~~~v~l~C-gH~fC~~C~~~yi~~~i~~g~~~~~i~CP~~~C~~~v~~~ 201 (594)
+.+.|..|.-.. + -.+.| .|..|..|+...+.. .=+|| .|+..++-.
T Consensus 27 G~~nCKsCWf~~--k--~LV~C~dHYLCl~CLtlmL~~---------SdrCp--IC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFEN--K--GLVECNNHYLCLNCLTLLLSV---------SNRCP--ICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCC--S--SEEECSSCEEEHHHHHHTCSS---------SSEET--TTTEECCCC
T ss_pred CcccChhhcccc--C--CeeeecchhhHHHHHHHHHhh---------ccCCc--ccCCcCCcc
Confidence 467899998543 2 23344 699999999887643 35799 799887644
No 253
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=23.33 E-value=53 Score=25.95 Aligned_cols=32 Identities=19% Similarity=0.558 Sum_probs=22.1
Q ss_pred CCcccCCCCCCCCeeeeecCCCCceeec-cCCccccccc
Q 007671 228 RKTKWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNV 265 (594)
Q Consensus 228 ~~~~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C 265 (594)
.....|. .|+..+. .......| .||..||..|
T Consensus 17 ~~~~~C~--~C~~~Fs----~~~RrHHCR~CG~v~C~~C 49 (82)
T 2yw8_A 17 DEATHCR--QCEKEFS----ISRRKHHCRNCGHIFCNTC 49 (82)
T ss_dssp CCCCBCT--TTCCBCB----TTBCCEECTTTCCEECSGG
T ss_pred ccCCccc--CcCCccc----CccccccCCCCCCEEChHH
Confidence 3455677 4876542 22345689 9999999999
No 254
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.20 E-value=91 Score=23.42 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcCC-ChHHHHHHHhh
Q 007671 82 DITRISTVLSISKVAASILLRFYNW-SVSKVHDEWFA 117 (594)
Q Consensus 82 ~i~~v~~~l~i~~~~a~~LL~~~~W-~~~~l~e~~~~ 117 (594)
.|.++.+ ++.+...|...|+..+| |++...+-.+.
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3555555 69999999999999999 99888776654
No 255
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.18 E-value=41 Score=29.24 Aligned_cols=29 Identities=28% Similarity=0.902 Sum_probs=18.6
Q ss_pred cCCCCCCCCcceeecCCCCcccccCCCccee
Q 007671 297 NSKPCPRCKRPIEKNQGCMHMTCTPPCKFEF 327 (594)
Q Consensus 297 ntK~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (594)
+.-+||+|+...-=..|=+ +.|. .|+++|
T Consensus 26 ~lP~CP~C~seytYeDg~l-~vCP-eC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGAL-LVCP-ECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSSS-EEET-TTTEEE
T ss_pred cCCCCCCCCCcceEecCCe-EECC-cccccc
Confidence 3479999998665444433 5665 566654
No 256
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=22.81 E-value=41 Score=31.87 Aligned_cols=33 Identities=24% Similarity=0.625 Sum_probs=24.5
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 334 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (594)
..|+.|+...- -.--.-.|+ .||.-||..|...
T Consensus 162 ~~C~~C~~~F~--~~~rrhhCr-~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFT--FTNRKHHCR-NCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCC--SSSCCEECT-TTCCEECSTTSCE
T ss_pred CccCCCCCccC--CcccccccC-CcCCEEChHHhCC
Confidence 68999988764 112235799 8999999999753
No 257
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=22.80 E-value=23 Score=32.82 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=40.9
Q ss_pred cccccccccccCCC----cccc-cCCCcccHhhHHHHHH--hhccCCCCccccccCCCcCCCccchhHHhhccChHHHHH
Q 007671 142 MTCGICFENYPSDR----LLAA-ACGHPFCSSCWTGYIS--TAINDGPGCLMLRCPDPSCGAAVGQDMIYLLSSDEDKVK 214 (594)
Q Consensus 142 ~~C~IC~e~~~~~~----~v~l-~CgH~fC~~C~~~yi~--~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~ek 214 (594)
..|+||...+..++ ++.. .|..-|...|..-.-. ..+.+-+....+.|| .|...-++. ++..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHHHHHHHH
Confidence 45999998886554 3333 3887888888742111 111110001258999 798766543 444444455554
Q ss_pred HHHH
Q 007671 215 YNRY 218 (594)
Q Consensus 215 y~~~ 218 (594)
+.+.
T Consensus 80 l~~v 83 (183)
T 3lqh_A 80 LKQV 83 (183)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 258
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=22.80 E-value=70 Score=25.34 Aligned_cols=38 Identities=21% Similarity=0.446 Sum_probs=25.9
Q ss_pred CCCCCccccccccccccCC--CcccccCCCcccHhhHHHH
Q 007671 136 FPDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGY 173 (594)
Q Consensus 136 ~~~~~~~~C~IC~e~~~~~--~~v~l~CgH~fC~~C~~~y 173 (594)
.++.....|.+|...|..- .-.--.||+.||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3455567899999887432 1222369999999997653
No 259
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=22.47 E-value=45 Score=29.20 Aligned_cols=31 Identities=19% Similarity=0.499 Sum_probs=21.0
Q ss_pred CCcccCCCCCCCCeeeeecCC--CCceeec-cCCcc
Q 007671 228 RKTKWCPAPGCDYAVDFVVGS--GNYDVTC-RCSYS 260 (594)
Q Consensus 228 ~~~~~CP~p~C~~~i~~~~~~--~~~~v~C-~C~~~ 260 (594)
..+++|| .|++++.+..+. +...+.| .|++.
T Consensus 22 ~~~~FCP--eCgNmL~pked~~~~~l~~~CrtCgY~ 55 (133)
T 3qt1_I 22 TTFRFCR--DCNNMLYPREDKENNRLLFECRTCSYV 55 (133)
T ss_dssp CCCCBCT--TTCCBCBCCBCTTTCCBCCBCSSSCCB
T ss_pred cCCeeCC--CCCCEeeECccCCCceeEEECCCCCCc
Confidence 4678999 599998766332 2344578 77765
No 260
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=22.24 E-value=1.4e+02 Score=27.66 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccc
Q 007671 498 TKLAGLTSVTRNYFENLVRALENGLSDVDT 527 (594)
Q Consensus 498 ~~l~~l~~~~~~~~~~l~~~le~gl~~~~~ 527 (594)
.++..|...+.-|.+.+...|+.++.+++.
T Consensus 150 ~~~eeLr~~l~P~~eelk~~l~~~veel~~ 179 (191)
T 1nfn_A 150 RDADDLQKRLAVYQAGAREGAERGLSAIRE 179 (191)
T ss_dssp HHHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555543
No 261
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=21.94 E-value=46 Score=25.66 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeecccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLG 333 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (594)
..|..|+...--. =-.-.|+ .||.-||..|..
T Consensus 12 ~~C~~C~~~F~~~--~RrHHCR-~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLL--NRKHHCR-SCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTT--BCCEECT-TTCCEECGGGSC
T ss_pred CcccCCCCccCCc--cccccCC-CCCEEEcccccC
Confidence 5799999876411 1125688 899999999975
No 262
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=21.87 E-value=1.8e+02 Score=20.18 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHhcCCChHHHHHHHhh
Q 007671 78 RQEEDITRISTVLSIS-KVAASILLRFYNWSVSKVHDEWFA 117 (594)
Q Consensus 78 ~~~~~i~~v~~~l~i~-~~~a~~LL~~~~W~~~~l~e~~~~ 117 (594)
.....|.++.+. |.+ ...+...|+..+||+++.++..+.
T Consensus 6 ~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 6 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 445667777664 775 556688899999999998887653
No 263
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=21.45 E-value=52 Score=24.18 Aligned_cols=27 Identities=30% Similarity=0.934 Sum_probs=18.1
Q ss_pred CCCCCCCcceeecCCCCcccccC-CCccee
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTP-PCKFEF 327 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~-~C~~~F 327 (594)
-.||.|+.+++-.. ..+.|.. .|+..|
T Consensus 11 L~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred eeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 58999999988665 5566641 255443
No 264
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.10 E-value=38 Score=25.35 Aligned_cols=21 Identities=38% Similarity=0.902 Sum_probs=14.4
Q ss_pred CCCCCCCCcceeecCCCCcccccCCCc
Q 007671 298 SKPCPRCKRPIEKNQGCMHMTCTPPCK 324 (594)
Q Consensus 298 tK~CPkC~~~IEK~~GCnhm~C~~~C~ 324 (594)
.-.||+|+.+.. .|-.|. .||
T Consensus 30 l~~c~~cGe~~~-----~H~vc~-~CG 50 (60)
T 3v2d_5 30 LVPCPECKAMKP-----PHTVCP-ECG 50 (60)
T ss_dssp CEECTTTCCEEC-----TTSCCT-TTC
T ss_pred eeECCCCCCeec-----ceEEcC-CCC
Confidence 467888888776 455565 565
No 265
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.99 E-value=38 Score=32.30 Aligned_cols=33 Identities=24% Similarity=0.606 Sum_probs=24.1
Q ss_pred CCCCCCCcceeecCCCCcccccCCCcceeeeccccc
Q 007671 299 KPCPRCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGQ 334 (594)
Q Consensus 299 K~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (594)
..|+.|+.+.-- ---.-.|+ .||.-||..|...
T Consensus 165 ~~C~~C~~~F~~--~~RrhHCR-~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGV--MTRKHHCR-ACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBT--TBCCEECT-TTCCEECTTTCCE
T ss_pred CCCcCcCCCCCc--cccccccC-CCcCEeChhhcCC
Confidence 579999876641 11235698 8999999999764
No 266
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.83 E-value=65 Score=25.89 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=23.2
Q ss_pred ccCCCCCCCCeeeeecCCCCceeec-cCCccccccc
Q 007671 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWNV 265 (594)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C 265 (594)
+.|| +|..+-.+- +.....|.| .|+...|.-=
T Consensus 37 VkCp--~C~~~~~VF-ShA~t~V~C~~CgtvL~~PT 69 (86)
T 3iz6_X 37 VKCQ--GCFNITTVF-SHSQTVVVCPGCQTVLCQPT 69 (86)
T ss_dssp EECT--TTCCEEEEE-TTCSSCCCCSSSCCCCSCCC
T ss_pred EECC--CCCCeeEEE-ecCCcEEEccCCCCEeecCC
Confidence 7899 698765443 445567899 9999988644
No 267
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.68 E-value=76 Score=24.00 Aligned_cols=30 Identities=17% Similarity=0.302 Sum_probs=21.6
Q ss_pred ccCCCCCCCCeeeeecCCCCceeec-cCCccccc
Q 007671 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCW 263 (594)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~ 263 (594)
+.|| +|.+.-..- +.....|.| .|+...|.
T Consensus 16 VkCp--~C~~~q~VF-Sha~t~V~C~~Cgt~L~~ 46 (63)
T 3j20_W 16 VKCI--DCGNEQIVF-SHPATKVRCLICGATLVE 46 (63)
T ss_dssp EECS--SSCCEEEEE-SSCSSCEECSSSCCEEEE
T ss_pred EECC--CCCCeeEEE-ecCCeEEEccCcCCEEec
Confidence 6798 598764443 345567899 99999885
No 268
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=20.55 E-value=72 Score=25.34 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=22.3
Q ss_pred ccCCCCCCCCeeeeecCCCCceeec-cCCcccccc
Q 007671 231 KWCPAPGCDYAVDFVVGSGNYDVTC-RCSYSFCWN 264 (594)
Q Consensus 231 ~~CP~p~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 264 (594)
+.|| +|.++-.+- +.....|.| .|+...|.-
T Consensus 33 VkCp--~C~n~q~VF-ShA~t~V~C~~Cg~~L~~P 64 (81)
T 2xzm_6 33 VKCA--QCQNIQMIF-SNAQSTIICEKCSAILCKP 64 (81)
T ss_dssp EECS--SSCCEEEEE-TTCSSCEECSSSCCEEEEE
T ss_pred eECC--CCCCeeEEE-ecCccEEEccCCCCEEeec
Confidence 5798 598765443 445667899 999998853
No 269
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.15 E-value=41 Score=28.92 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=22.4
Q ss_pred CCCCccccccccccccCC--CcccccCCCcccHhhHHHHH
Q 007671 137 PDGEEMTCGICFENYPSD--RLLAAACGHPFCSSCWTGYI 174 (594)
Q Consensus 137 ~~~~~~~C~IC~e~~~~~--~~v~l~CgH~fC~~C~~~yi 174 (594)
|......|..|...|... .-.--.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 445566899999887421 12234699999999976554
Done!