Query 007672
Match_columns 594
No_of_seqs 185 out of 2081
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 07:37:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 5.4E-73 1.8E-77 614.4 43.1 492 32-593 9-539 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 1.7E-72 6E-77 608.6 42.1 498 20-592 4-531 (536)
3 3o83_A Peptide arylation enzym 100.0 3.2E-72 1.1E-76 607.4 40.2 477 41-592 29-536 (544)
4 1v25_A Long-chain-fatty-acid-C 100.0 9.3E-72 3.2E-76 603.3 43.8 479 41-592 17-532 (541)
5 3rix_A Luciferase, luciferin 4 100.0 3.9E-72 1.3E-76 607.8 40.8 497 32-593 10-538 (550)
6 3etc_A AMP-binding protein; ad 100.0 2E-71 6.7E-76 604.4 45.1 484 38-592 52-575 (580)
7 3r44_A Fatty acyl COA syntheta 100.0 7.4E-72 2.5E-76 600.7 39.9 474 39-592 13-509 (517)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.7E-71 5.8E-76 601.0 37.3 473 41-592 24-527 (539)
9 2d1s_A Luciferase, luciferin 4 100.0 3.4E-70 1.1E-74 591.7 41.1 497 22-592 9-539 (548)
10 3ivr_A Putative long-chain-fat 100.0 2E-70 6.7E-75 589.3 38.0 469 40-593 4-498 (509)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 4E-70 1.4E-74 585.9 40.0 466 41-592 1-500 (504)
12 4fuq_A Malonyl COA synthetase; 100.0 1.1E-70 3.7E-75 589.6 35.4 468 46-592 4-496 (503)
13 4gr5_A Non-ribosomal peptide s 100.0 4.4E-70 1.5E-74 593.9 38.5 459 38-593 71-568 (570)
14 3c5e_A Acyl-coenzyme A synthet 100.0 3E-69 1E-73 586.4 43.4 481 38-592 34-558 (570)
15 1pg4_A Acetyl-COA synthetase; 100.0 1.3E-69 4.5E-74 598.1 40.6 493 40-592 74-617 (652)
16 1amu_A GRSA, gramicidin synthe 100.0 3E-69 1E-73 585.5 39.5 458 39-593 36-526 (563)
17 2v7b_A Benzoate-coenzyme A lig 100.0 3.8E-69 1.3E-73 582.0 39.2 480 38-592 20-528 (529)
18 3rg2_A Enterobactin synthase c 100.0 2.6E-69 8.8E-74 593.1 38.1 476 40-592 25-530 (617)
19 1ry2_A Acetyl-coenzyme A synth 100.0 3.7E-69 1.3E-73 594.7 38.1 495 40-592 80-633 (663)
20 4dg8_A PA1221; ANL superfamily 100.0 1E-68 3.5E-73 586.1 39.0 455 40-592 25-509 (620)
21 3e7w_A D-alanine--poly(phospho 100.0 7E-69 2.4E-73 577.3 35.5 460 42-593 1-500 (511)
22 3ipl_A 2-succinylbenzoate--COA 100.0 2.6E-69 9E-74 579.6 32.2 471 42-593 1-494 (501)
23 3fce_A D-alanine--poly(phospho 100.0 4E-69 1.4E-73 579.5 33.5 460 42-592 1-500 (512)
24 3tsy_A Fusion protein 4-coumar 100.0 3.2E-68 1.1E-72 614.1 39.2 508 16-592 39-578 (979)
25 3l8c_A D-alanine--poly(phospho 100.0 2.8E-68 9.5E-73 574.5 33.6 461 41-592 3-508 (521)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 2.2E-68 7.5E-73 571.7 31.1 458 38-592 18-504 (505)
27 3gqw_A Fatty acid AMP ligase; 100.0 2.1E-66 7E-71 567.4 38.9 482 29-592 8-559 (576)
28 3kxw_A Saframycin MX1 syntheta 100.0 7.1E-67 2.4E-71 572.5 33.5 476 39-592 8-563 (590)
29 3ite_A SIDN siderophore synthe 100.0 3.8E-66 1.3E-70 562.8 34.9 476 39-593 17-540 (562)
30 2vsq_A Surfactin synthetase su 100.0 2.9E-64 9.8E-69 595.3 43.0 460 41-593 463-957 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 9.8E-58 3.4E-62 487.5 31.9 401 40-514 22-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 4.3E-46 1.5E-50 380.2 14.8 290 219-592 36-350 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.6E-42 1.2E-46 362.1 21.1 308 217-590 82-431 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 6.1E-42 2.1E-46 361.1 22.2 312 216-590 88-438 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.1E-41 3.6E-46 358.7 23.1 312 216-591 86-434 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 1E-27 3.6E-32 246.1 17.4 237 217-521 88-365 (369)
37 3lax_A Phenylacetate-coenzyme 99.0 1.7E-10 5.8E-15 95.1 3.8 78 513-592 1-107 (109)
38 3gxs_A Phenylacetate-coenzyme 98.9 6.6E-10 2.3E-14 91.4 2.4 74 513-588 1-102 (109)
39 4eql_A 4-substituted benzoates 98.8 1.1E-07 3.7E-12 100.3 19.3 132 385-539 302-447 (581)
40 4b2g_A GH3-1 auxin conjugating 98.8 1.2E-07 4.3E-12 100.0 17.9 131 385-538 307-458 (609)
41 4epl_A Jasmonic acid-amido syn 98.6 4E-07 1.4E-11 95.7 15.4 134 383-538 302-453 (581)
42 2y27_A Phenylacetate-coenzyme 94.1 0.58 2E-05 47.9 13.8 124 55-181 88-220 (437)
43 2y4o_A Phenylacetate-coenzyme 93.0 1.2 4.1E-05 45.6 14.0 123 56-181 91-222 (443)
44 3qov_A Phenylacetate-coenzyme 93.0 0.97 3.3E-05 46.1 13.2 123 57-182 86-217 (436)
45 3ipl_A 2-succinylbenzoate--COA 90.2 3.7 0.00013 42.5 14.2 121 55-181 161-284 (501)
46 3hgu_A EHPF; phenazine, antibi 89.8 1.8 6.1E-05 42.9 10.9 123 55-181 89-241 (369)
47 1mdb_A 2,3-dihydroxybenzoate-A 85.0 12 0.00042 39.0 14.5 121 55-181 180-308 (539)
48 2d1s_A Luciferase, luciferin 4 84.2 7.1 0.00024 41.0 12.2 121 57-181 192-319 (548)
49 3o83_A Peptide arylation enzym 82.7 12 0.00043 39.0 13.3 122 55-182 189-318 (544)
50 3r44_A Fatty acyl COA syntheta 81.7 14 0.00049 38.2 13.2 119 56-181 169-294 (517)
51 4gr5_A Non-ribosomal peptide s 81.5 6.9 0.00024 41.3 10.8 122 55-182 212-337 (570)
52 4dg8_A PA1221; ANL superfamily 81.0 6.5 0.00022 42.1 10.4 122 55-182 162-287 (620)
53 3rg2_A Enterobactin synthase c 79.8 22 0.00074 37.8 14.1 121 56-182 183-313 (617)
54 3e7w_A D-alanine--poly(phospho 79.2 13 0.00046 38.4 11.9 122 55-181 141-270 (511)
55 3fce_A D-alanine--poly(phospho 78.6 13 0.00046 38.4 11.7 122 55-181 142-271 (512)
56 1t5h_X 4-chlorobenzoyl COA lig 78.1 10 0.00035 39.2 10.6 121 55-181 151-282 (504)
57 3ivr_A Putative long-chain-fat 77.5 29 0.00098 35.8 13.9 119 55-180 158-281 (509)
58 3rix_A Luciferase, luciferin 4 76.9 14 0.00048 38.7 11.4 123 56-181 189-317 (550)
59 3kxw_A Saframycin MX1 syntheta 75.9 16 0.00054 38.5 11.6 122 55-181 165-299 (590)
60 4gs5_A Acyl-COA synthetase (AM 75.4 7 0.00024 38.4 8.1 109 44-163 27-138 (358)
61 3c5e_A Acyl-coenzyme A synthet 74.7 17 0.00057 38.3 11.3 123 55-182 204-333 (570)
62 1v25_A Long-chain-fatty-acid-C 73.3 13 0.00045 38.8 10.0 124 55-181 174-303 (541)
63 1pg4_A Acetyl-COA synthetase; 70.5 23 0.0008 37.9 11.4 123 56-182 255-389 (652)
64 3etc_A AMP-binding protein; ad 70.5 18 0.0006 38.2 10.2 123 55-182 223-352 (580)
65 1ry2_A Acetyl-coenzyme A synth 67.6 30 0.001 37.2 11.4 122 56-181 261-394 (663)
66 3nyq_A Malonyl-COA ligase; A/B 65.7 41 0.0014 34.6 11.7 103 55-164 153-259 (505)
67 3ni2_A 4-coumarate:COA ligase; 64.4 41 0.0014 34.8 11.5 101 218-328 35-137 (536)
68 3g7s_A Long-chain-fatty-acid-- 62.7 66 0.0023 33.4 12.7 107 218-328 32-140 (549)
69 2v7b_A Benzoate-coenzyme A lig 61.8 24 0.00083 36.5 9.1 105 55-164 181-290 (529)
70 2vsq_A Surfactin synthetase su 61.0 16 0.00054 43.0 8.1 122 55-182 605-731 (1304)
71 3gqw_A Fatty acid AMP ligase; 60.2 35 0.0012 35.7 10.1 103 56-162 175-284 (576)
72 3tbh_A O-acetyl serine sulfhyd 55.6 45 0.0015 32.2 9.2 67 91-157 60-127 (334)
73 3t5a_A Long-chain-fatty-acid-- 54.5 88 0.003 31.5 11.8 107 218-328 37-148 (480)
74 3l8c_A D-alanine--poly(phospho 53.9 89 0.0031 32.0 11.9 123 56-181 144-274 (521)
75 1amu_A GRSA, gramicidin synthe 53.4 76 0.0026 33.1 11.3 96 218-325 52-149 (563)
76 3ite_A SIDN siderophore synthe 50.6 86 0.0029 32.5 11.2 123 57-182 175-305 (562)
77 3ezx_A MMCP 1, monomethylamine 47.8 81 0.0028 28.2 8.9 53 266-318 93-149 (215)
78 3tsy_A Fusion protein 4-coumar 43.3 55 0.0019 37.0 8.7 99 218-326 74-174 (979)
79 4fuq_A Malonyl COA synthetase; 42.7 63 0.0022 33.1 8.4 85 239-326 28-114 (503)
80 3vc3_A Beta-cyanoalnine syntha 38.8 1.2E+02 0.0041 29.3 9.2 65 93-157 77-142 (344)
81 4eez_A Alcohol dehydrogenase 1 38.2 1.2E+02 0.0041 29.0 9.3 77 77-156 137-216 (348)
82 4aec_A Cysteine synthase, mito 31.6 1.7E+02 0.0059 29.2 9.2 64 93-156 165-229 (430)
83 3ist_A Glutamate racemase; str 31.6 1.3E+02 0.0044 27.9 7.7 62 46-114 19-80 (269)
84 1z7w_A Cysteine synthase; tran 31.2 1.9E+02 0.0064 27.5 9.2 65 93-157 57-122 (322)
85 2q3b_A Cysteine synthase A; py 29.2 2.3E+02 0.0078 26.7 9.4 66 91-157 56-122 (313)
86 3goh_A Alcohol dehydrogenase, 28.0 1.5E+02 0.0051 27.9 7.9 73 76-153 115-190 (315)
87 2egu_A Cysteine synthase; O-ac 28.0 2.4E+02 0.0082 26.4 9.3 65 92-157 55-120 (308)
88 2cf5_A Atccad5, CAD, cinnamyl 28.0 1.3E+02 0.0043 29.2 7.4 77 77-156 153-233 (357)
89 3ijw_A Aminoglycoside N3-acety 26.9 45 0.0015 31.0 3.6 25 87-111 18-42 (268)
90 1h2b_A Alcohol dehydrogenase; 26.8 1.7E+02 0.0059 28.1 8.2 64 91-157 175-240 (359)
91 1zsy_A Mitochondrial 2-enoyl t 25.8 1.6E+02 0.0055 28.3 7.8 78 77-155 140-223 (357)
92 3s2e_A Zinc-containing alcohol 25.1 1.7E+02 0.0058 27.9 7.7 76 77-156 140-218 (340)
93 2jtq_A Phage shock protein E; 25.1 1.6E+02 0.0056 21.1 6.0 46 75-127 22-67 (85)
94 2nyg_A YOKD protein; PFAM02522 25.0 50 0.0017 30.8 3.6 24 88-111 17-40 (273)
95 3sma_A FRBF; N-acetyl transfer 25.0 51 0.0018 30.9 3.6 30 75-111 20-49 (286)
96 3jv7_A ADH-A; dehydrogenase, n 24.9 1.7E+02 0.0057 28.0 7.6 78 77-157 143-225 (345)
97 2pqm_A Cysteine synthase; OASS 24.4 2.5E+02 0.0085 26.9 8.7 64 93-157 69-133 (343)
98 3tqh_A Quinone oxidoreductase; 24.3 1.7E+02 0.0057 27.7 7.4 75 77-156 126-204 (321)
99 3two_A Mannitol dehydrogenase; 24.2 1.9E+02 0.0065 27.7 7.9 73 77-153 150-225 (348)
100 1y80_A Predicted cobalamin bin 23.9 2.4E+02 0.0083 24.7 7.9 56 101-156 88-147 (210)
101 1yqd_A Sinapyl alcohol dehydro 23.6 2.2E+02 0.0075 27.5 8.3 63 91-156 177-240 (366)
102 3ju7_A Putative PLP-dependent 23.5 1.7E+02 0.006 28.3 7.6 60 92-154 69-135 (377)
103 3lzd_A DPH2; diphthamide biosy 23.2 1.1E+02 0.0039 29.9 5.8 76 16-112 17-92 (378)
104 1ve1_A O-acetylserine sulfhydr 22.9 3.4E+02 0.012 25.3 9.3 65 92-157 50-117 (304)
105 4a2c_A Galactitol-1-phosphate 22.7 3.3E+02 0.011 25.8 9.3 65 90-157 150-214 (346)
106 1ofu_X SULA, hypothetical prot 21.8 2.8E+02 0.0095 21.9 6.9 51 89-139 46-98 (119)
107 2jfz_A Glutamate racemase; cel 21.8 1.2E+02 0.004 27.9 5.5 50 46-98 14-63 (255)
108 1uuf_A YAHK, zinc-type alcohol 20.9 2.3E+02 0.008 27.4 7.8 62 91-156 185-246 (369)
109 4ej6_A Putative zinc-binding d 20.9 2.9E+02 0.0099 26.7 8.5 59 92-154 174-233 (370)
110 3dwg_A Cysteine synthase B; su 20.8 3.2E+02 0.011 25.8 8.7 63 93-156 64-127 (325)
111 2gzm_A Glutamate racemase; enz 20.3 3.6E+02 0.012 24.6 8.6 61 46-113 17-77 (267)
112 3ri6_A O-acetylhomoserine sulf 20.2 3.3E+02 0.011 27.0 8.9 62 105-166 100-164 (430)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.4e-73 Score=614.43 Aligned_cols=492 Identities=21% Similarity=0.227 Sum_probs=378.8
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCC--CCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeC
Q 007672 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG--KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGA 109 (594)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~--~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~ 109 (594)
.++|..+....++.++|+++++++||++|+++. ++ ..+.++++||+||.++++++|+.|++.|+++||+|+|+++
T Consensus 9 ~~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~ 85 (549)
T 3g7s_A 9 IGFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIP 85 (549)
T ss_dssp CCCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred cCCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECC
Confidence 456666667789999999999999999999987 52 2344578999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHH
Q 007672 110 NCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEM 189 (594)
Q Consensus 110 n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 189 (594)
|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+...... .....++..+..
T Consensus 86 ~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~------- 156 (549)
T 3g7s_A 86 NSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEK--TGVERVFVVGGE------- 156 (549)
T ss_dssp SSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTT--SCCCEEEEETCS-------
T ss_pred CCHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhh--CCCcEEEEeCCC-------
Confidence 99999999999999999999999999999999999999999999998876655433221 224555555432
Q ss_pred HhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEE
Q 007672 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (594)
..+++++...............++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~ 224 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTI 224 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEE
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEE
Confidence 235666665443222222222348999999999999999999999999999998887777 78899999
Q ss_pred EEecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 007672 270 LSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDAL 348 (594)
Q Consensus 270 ~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 348 (594)
++.+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|.+.......
T Consensus 225 ~~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------- 291 (549)
T 3g7s_A 225 VGCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNK------------- 291 (549)
T ss_dssp ECCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-------------
T ss_pred EEeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-------------
Confidence 999999999998888888999999999876 999999999999999999999999998764322110
Q ss_pred HHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHh----cC---CceEeeecccCCC
Q 007672 349 YKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVT----CC---AFLVQGYGLTETC 421 (594)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~----~~---~~i~~~yG~tE~~ 421 (594)
..++ +++|.+++||+++++++.+.+.+. ++ +.+++.||+||++
T Consensus 292 ----------------------~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~ 341 (549)
T 3g7s_A 292 ----------------------TYDW--------SYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEAC 341 (549)
T ss_dssp ----------------------CCCC--------TTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGS
T ss_pred ----------------------cCCc--------cceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccc
Confidence 0112 289999999999999999999887 56 8999999999999
Q ss_pred CceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc---cCC--ccc
Q 007672 422 GPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI---IDG--WFH 496 (594)
Q Consensus 422 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~---~~g--~~~ 496 (594)
.+++...........++|.|+++++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+++.| .+| ||+
T Consensus 342 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~ 419 (549)
T 3g7s_A 342 PMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFR 419 (549)
T ss_dssp SEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEE
T ss_pred hhhhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEc
Confidence 98877665554555899999999999999944444 44566999999999999999999999999998 678 999
Q ss_pred cCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc----cccee
Q 007672 497 TGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ----KVGIL 566 (594)
Q Consensus 497 TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~----~~~~~ 566 (594)
|||+|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..+..
T Consensus 420 TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~ 498 (549)
T 3g7s_A 420 TGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEE 498 (549)
T ss_dssp EEEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHH
T ss_pred cCcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHH
Confidence 9999999999999999999999997 8999999999999999999999999998875 33443321 12222
Q ss_pred e--------eEeeeecC------ceeeeccccccccccccC
Q 007672 567 E--------WSCWFIPG------TLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 567 ~--------~~~~~~p~------~i~~~~~gk~~r~~~~~~ 593 (594)
+ ++.|++|+ .||+|++||++|++||+-
T Consensus 499 ~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 539 (549)
T 3g7s_A 499 DIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREK 539 (549)
T ss_dssp HHHHHHHTTCC-----CCCCEEEECC---------------
T ss_pred HHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHH
Confidence 2 24455555 589999999999999873
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=1.7e-72 Score=608.62 Aligned_cols=498 Identities=24% Similarity=0.303 Sum_probs=400.8
Q ss_pred CCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCC
Q 007672 20 SVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAE 99 (594)
Q Consensus 20 ~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~ 99 (594)
.+..++++......+| ...++.++|.++++++||++|+++. ++ + +++||+||.++++++|++|++.|++
T Consensus 4 ~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---AN--G--DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CC--C--CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 3445777655444333 3488999999999999999999864 22 2 6899999999999999999999999
Q ss_pred CCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEe
Q 007672 100 PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCF 179 (594)
Q Consensus 100 ~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~ 179 (594)
+||+|+|+++|+++++++++||+++|++++|++|.++.+++.+++++++++++|++......+....... .. .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987665553322211 22 34444
Q ss_pred cCCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccc
Q 007672 180 TSLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQF 259 (594)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~ 259 (594)
+... .....++++...... ........++++++++|||||||.||+|+++|+++++.+........ .
T Consensus 150 ~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~-~ 216 (536)
T 3ni2_A 150 DSAP-----------DGCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN-P 216 (536)
T ss_dssp SCCC-----------TTCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-C
T ss_pred cCCC-----------CCccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-c
Confidence 4321 124456666654322 22334567899999999999999999999999999988766433210 0
Q ss_pred cCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhh
Q 007672 260 EDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEEL 337 (594)
Q Consensus 260 ~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~ 337 (594)
...+..+|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|++.
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~-------- 288 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKS-------- 288 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTC--------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhC--------
Confidence 125778999999999999999865 6778999999999876 999999999999999999999999988642
Q ss_pred chHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeec
Q 007672 338 RPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYG 416 (594)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG 416 (594)
+..+..+++ +||.+++||+++++++.+.+.+.+ ++.+++.||
T Consensus 289 -----------------------------~~~~~~~l~--------~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 289 -----------------------------PDLDKHDLS--------SLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp -----------------------------SCGGGSCCT--------TCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred -----------------------------cccccCCCc--------cceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 111222233 899999999999999999999988 899999999
Q ss_pred ccCCCCceeccC----CCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c
Q 007672 417 LTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I 491 (594)
Q Consensus 417 ~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~ 491 (594)
+||++.+++... .......+++|.|+++++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGA--SLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCc--CCCCCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 999998765532 1122344889999999999999933343 44566999999999999999999999999999 8
Q ss_pred CCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--cc
Q 007672 492 DGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KV 563 (594)
Q Consensus 492 ~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~ 563 (594)
+|||+|||+|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..
T Consensus 410 ~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~ 488 (536)
T 3ni2_A 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQA 488 (536)
T ss_dssp TSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCC
T ss_pred CCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCC
Confidence 999999999999999999999999999997 7999999999999999999999999998764 44443322 12
Q ss_pred ceee--------eEe------eeecCceeeecccccccccccc
Q 007672 564 GILE--------WSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 564 ~~~~--------~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+..+ ++. +...+.||+|++||++|+++++
T Consensus 489 ~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~ 531 (536)
T 3ni2_A 489 TEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKE 531 (536)
T ss_dssp CHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHT
T ss_pred CHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHH
Confidence 1111 133 4445679999999999999987
No 3
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.2e-72 Score=607.38 Aligned_cols=477 Identities=14% Similarity=0.180 Sum_probs=334.5
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+|+++|+++++++++|
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH----HHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
|+++|++++|+++.++.+++.+++++++++++|++..... .....+.........++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999876431 111111222244455555544311
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
...+.++...............++++++++|||||||.||+|+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444332222222455789999999999999999999999999999999888777 789999999999999
Q ss_pred HHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 277 ~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++.......
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------------------ 304 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKD------------------ 304 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHH------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccc------------------
Confidence 9999874 6778999999999876 999999999999999999999999998764322111
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCcc
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 433 (594)
+++ +||.+++||+++++++.+.+.+.+++.+++.||+||++..+.........
T Consensus 305 -------------------~~~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 305 -------------------QIQ--------SLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -------------------HHT--------TCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------cCC--------cceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 122 89999999999999999999998999999999999998655444333333
Q ss_pred ccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEE
Q 007672 434 MVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (594)
Q Consensus 434 ~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~ 511 (594)
...++|.|+ ++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++|+||+|++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYRE--VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCCC--CCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 347899996 899999999 66654 4456999999999999999999999999999 899999999999999999999
Q ss_pred EeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc-cccee---------eeEeeeecC
Q 007672 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ-KVGIL---------EWSCWFIPG 575 (594)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~-~~~~~---------~~~~~~~p~ 575 (594)
.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..... .++.|++|+
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~ 513 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPD 513 (544)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCc
Confidence 9999999996 8999999999999999999999999998775 34443321 11111 235566665
Q ss_pred ------ceeeecccccccccccc
Q 007672 576 ------TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ------~i~~~~~gk~~r~~~~~ 592 (594)
.||+|++||++|+++++
T Consensus 514 ~i~~v~~lP~t~~GKi~r~~L~~ 536 (544)
T 3o83_A 514 QIKLIESLPLTAVGKVDKKQLRS 536 (544)
T ss_dssp -----------------------
T ss_pred EEEEeccCCCCCCCCCcHHHHHH
Confidence 68999999999999987
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9.3e-72 Score=603.30 Aligned_cols=479 Identities=24% Similarity=0.314 Sum_probs=371.2
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. +. +..+++||+||.++++++|++|+++|+++||+|+|+++|+++++++++|
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 22 2347899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|++|.++.+++.+++++++++++|++.+....+.... ...+..+.++.+++... .....|
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIR-GELKTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHG-GGCSSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHH-hhCCCccEEEEecCCCC----------cccccH
Confidence 9999999999999999999999999999999999987665443222 22344556666554321 023356
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhh--hhhhccccCCCCCCcEEEEecChhHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGV--DLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
++++..... .....++++++++|||||||.||+|++||+++++..... ...+ ++.++|++++.+|++|.
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~ 231 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHV 231 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhh
Confidence 555433211 134467899999999999999999999999998776542 2223 67889999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++........
T Consensus 232 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------------------- 291 (541)
T 1v25_A 232 NAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-------------------- 291 (541)
T ss_dssp HHHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC--------------------
T ss_pred hHHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCc--------------------
Confidence 998777788999999999864 8999999999999999999999999987654322111
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-----
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE----- 431 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~----- 431 (594)
+ ++||.+++||+++++++.+.+ +.+|+.+++.||+||++.+++......
T Consensus 292 -----------------l--------~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~ 345 (541)
T 1v25_A 292 -----------------L--------KTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESL 345 (541)
T ss_dssp -----------------C--------SSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTS
T ss_pred -----------------c--------hhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceeccccccccccc
Confidence 1 289999999999999999999 557999999999999998776654331
Q ss_pred -----ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcC
Q 007672 432 -----MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILP 505 (594)
Q Consensus 432 -----~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~ 505 (594)
.....++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||+++++.+++.| .+|||+|||+|++|+
T Consensus 346 ~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~ 424 (541)
T 1v25_A 346 SEEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE 424 (541)
T ss_dssp CHHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT
T ss_pred CccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC
Confidence 12347899999999999999 77766665445789999999999999999999999999 599999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc-ccccee---------eeE
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH-QKVGIL---------EWS 569 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~-~~~~~~---------~~~ 569 (594)
||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++.. ...+.. .++
T Consensus 425 dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~ 503 (541)
T 1v25_A 425 EGYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFA 503 (541)
T ss_dssp TCCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCC
T ss_pred CceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCc
Confidence 9999999999999996 8999999999999999999999999998764 3444322 111111 234
Q ss_pred eeeec------Cceeeecccccccccccc
Q 007672 570 CWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 570 ~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
.|++| +.||+|++||++|+++++
T Consensus 504 ~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 532 (541)
T 1v25_A 504 KWQLPDAYVFAEEIPRTSAGKFLKRALRE 532 (541)
T ss_dssp TTTSCSBC--------------CCTTHHH
T ss_pred cccCCcEEEEeCCCCCCCccCeeHHHHHH
Confidence 45555 468999999999999875
No 5
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=3.9e-72 Score=607.82 Aligned_cols=497 Identities=24% Similarity=0.270 Sum_probs=336.9
Q ss_pred CCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 007672 32 NGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (594)
Q Consensus 32 ~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~ 111 (594)
.+.|..+....|+.++|.++++++||++|++... ++..+ +++||+||.++++++|++|+++|+++||+|+|+++|+
T Consensus 10 ~~~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~ 85 (550)
T 3rix_A 10 GPAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENS 85 (550)
T ss_dssp CCCCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSC
T ss_pred CCCCCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCc
Confidence 3445566667899999999999999999986220 22222 6899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHh
Q 007672 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 112 ~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (594)
++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.... ...+....++.++....
T Consensus 86 ~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 157 (550)
T 3rix_A 86 LQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQ-KKLPIIQKIIIMDSKTD------- 157 (550)
T ss_dssp TTTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHH-HHCTTCCEEEETTCSSC-------
T ss_pred ccHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHH-hhCCCcceEEEEcCCcc-------
Confidence 9999999999999999999999999999999999999999999998776654332 23345666666654321
Q ss_pred hCCcceeeHHHHHhcccccc------cccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCC
Q 007672 192 QTGIKPYSWDEFLHLGKVNE------MEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV 265 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~ 265 (594)
.....++.++........ .+.....++++++++|||||||.||+|+++|++++..+......+ ...++.+
T Consensus 158 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~ 233 (550)
T 3rix_A 158 --YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIP 233 (550)
T ss_dssp --BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCT
T ss_pred --ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCC
Confidence 112345666654332211 111122457899999999999999999999999998877655431 1126778
Q ss_pred CcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHH
Q 007672 266 DDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRI 344 (594)
Q Consensus 266 ~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~ 344 (594)
++++++.+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.
T Consensus 234 ~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~--------------- 298 (550)
T 3rix_A 234 DTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS--------------- 298 (550)
T ss_dssp TCEEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHC---------------
T ss_pred CcEEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhC---------------
Confidence 9999999999999999888889999999999876 999999999999999999999999998652
Q ss_pred HHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCc-eEeeecccCCCCc
Q 007672 345 FDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAF-LVQGYGLTETCGP 423 (594)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~-i~~~yG~tE~~~~ 423 (594)
...+..+++ +||.+++||+++++++.+.+.+.++.. +++.||+||+++.
T Consensus 299 ----------------------~~~~~~~l~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~ 348 (550)
T 3rix_A 299 ----------------------TLIDKYDLS--------NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSA 348 (550)
T ss_dssp ----------------------CGGGGSCCT--------TCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSE
T ss_pred ----------------------ccccccCcc--------cccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccc
Confidence 112222333 899999999999999999999988875 9999999999988
Q ss_pred eeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEE
Q 007672 424 TTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQ 502 (594)
Q Consensus 424 ~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~ 502 (594)
++....... ..+++|.|+++++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|+
T Consensus 349 ~~~~~~~~~-~~~~vG~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~ 425 (550)
T 3rix_A 349 ILITPEGDD-KPGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY 425 (550)
T ss_dssp EEECCTTCC-CTTEEEEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred eecCCCCCC-CCCCcccccCCcEEEEEeCCCC--cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEE
Confidence 777655443 3489999999999999994334 445567999999999999999999999999999 899999999999
Q ss_pred EcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc--cccceeee------
Q 007672 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH--QKVGILEW------ 568 (594)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~--~~~~~~~~------ 568 (594)
+|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++.. ...+..++
T Consensus 426 ~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~ 504 (550)
T 3rix_A 426 WDEDEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS 504 (550)
T ss_dssp ECTTCCEEEC----------------------------------------------------------------------
T ss_pred EeCCceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999997 8999999999999999999999999998875 3343322 22222222
Q ss_pred --------E-eeeecCceeeeccccccccccccC
Q 007672 569 --------S-CWFIPGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 569 --------~-~~~~p~~i~~~~~gk~~r~~~~~~ 593 (594)
+ .+...+.||+|++||++|+++|+-
T Consensus 505 ~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~ 538 (550)
T 3rix_A 505 QVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREI 538 (550)
T ss_dssp ----------------------------------
T ss_pred hcccccccCCceEEEeecCCCCCcceeHHHHHHH
Confidence 1 145557899999999999999873
No 6
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2e-71 Score=604.36 Aligned_cols=484 Identities=16% Similarity=0.157 Sum_probs=378.0
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
+..++.+.++|+++|+++||++|+++. ++ .|..+++||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus 52 ~~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~ 127 (580)
T 3etc_A 52 PENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYC 127 (580)
T ss_dssp CSSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHH
T ss_pred cccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHH
Confidence 356677779999999999999999986 43 34558999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhH--HHHhcccccccccc-cEEEEecCCcHHHHHHHhhCC
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKV--KELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTG 194 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~ 194 (594)
++||+++|++++|+++.++.+++.+++++++++++|++.+.. ..+.... ..++.. ..++.++... .
T Consensus 128 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------~ 196 (580)
T 3etc_A 128 MLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAH-AECGDIPLKKAKVGGDV----------L 196 (580)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHH-HHHCSCCCEEEEESSSC----------C
T ss_pred HHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHh-hhCCCcceEEEEeCCcc----------c
Confidence 999999999999999999999999999999999999987643 3322211 122333 3444444321 1
Q ss_pred cceeeHHHHHhccccccccc---CCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEE
Q 007672 195 IKPYSWDEFLHLGKVNEMEI---LPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLS 271 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (594)
....++.+.+.......... ....++++++++|||||||.||+|+++|.+++..+......+ ++..++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 271 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYT 271 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEE
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEE
Confidence 23456666665443221111 245789999999999999999999999999988776654444 7888999999
Q ss_pred ecChhHHHHHHH-HHHhhhcCcEEEEec--C-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 007672 272 FLPLAHILDRVI-EEYFFRRGASVGYYH--G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDA 347 (594)
Q Consensus 272 ~~pl~~~~~~~~-~l~~l~~G~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~ 347 (594)
..|+.|..+.+. ++.++..|+++++.+ . ++..+++.|+++++|+++++|++++.|.+.
T Consensus 272 ~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~------------------ 333 (580)
T 3etc_A 272 VADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKE------------------ 333 (580)
T ss_dssp CCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTS------------------
T ss_pred eCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhc------------------
Confidence 999999888775 667889999998874 2 899999999999999999999999988642
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceecc
Q 007672 348 LYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVC 427 (594)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~ 427 (594)
.....+++ +||.+++||+++++++.+++.+.+|+.+++.||+||++..++..
T Consensus 334 --------------------~~~~~~l~--------~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~ 385 (580)
T 3etc_A 334 --------------------DLSHYNFS--------TLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATF 385 (580)
T ss_dssp --------------------CC---CCT--------TCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECC
T ss_pred --------------------ccccCCCc--------cceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecC
Confidence 01112233 89999999999999999999998899999999999998876665
Q ss_pred CCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc-----CCcccccCCCchhhhhcccCCccccCceEE
Q 007672 428 FPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG-----KTLFSGYYKNPDLTRESIIDGWFHTGDIGQ 502 (594)
Q Consensus 428 ~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g-----~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~ 502 (594)
.... ...+++|+|+++++++|+| +++..+ +.|+.|||+|+| +.++.||+++++.+++.|.+|||+|||+|+
T Consensus 386 ~~~~-~~~~~~G~p~~~~~v~ivd-~~g~~~--~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~ 461 (580)
T 3etc_A 386 PWME-PKPGSIGKPTPGYKIELMD-RDGRLC--EVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAW 461 (580)
T ss_dssp TTSC-CCTTCCBEECTTCEEEEEC-TTSCBC--CTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEE
T ss_pred CCCC-CCCCccccCCCCCEEEEEC-CCCCCC--CCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEE
Confidence 4433 3448999999999999999 666544 456999999997 789999999999999999999999999999
Q ss_pred EcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc--------ee--
Q 007672 503 ILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG--------IL-- 566 (594)
Q Consensus 503 ~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~--------~~-- 566 (594)
+|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|+|++++ .++++...... +.
T Consensus 462 ~d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~ 540 (580)
T 3etc_A 462 MDEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDH 540 (580)
T ss_dssp ECTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred ECCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHH
Confidence 9999999999999999997 6999999999999999999999999998875 33333221111 11
Q ss_pred ---eeEeee------ecCceeeecccccccccccc
Q 007672 567 ---EWSCWF------IPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 ---~~~~~~------~p~~i~~~~~gk~~r~~~~~ 592 (594)
.++.|+ ..+.||+|++||++|+++|+
T Consensus 541 l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~ 575 (580)
T 3etc_A 541 VKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRD 575 (580)
T ss_dssp HHHHSCGGGCCSEEEEECC----------------
T ss_pred HHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHh
Confidence 113344 44578999999999999987
No 7
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.4e-72 Score=600.72 Aligned_cols=474 Identities=23% Similarity=0.300 Sum_probs=386.4
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....|+.++|+++++++||++|+++. +. .+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++
T Consensus 13 ~~~~~l~~~l~~~a~~~p~~~A~~~~---~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~ 85 (517)
T 3r44_A 13 DKMKNIGWMLRQRATVSPRLQAYVEP---ST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLF 85 (517)
T ss_dssp GGGGCHHHHHHHHHHHSTTSEEEEEG---GG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCCCeEEEeC---Cc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHH
Confidence 46789999999999999999999875 32 158999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|++|.++.+++.+++++++++++|++......+..... .......++..... .
T Consensus 86 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~ 149 (517)
T 3r44_A 86 YGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRA-QADPPGTVTDWIGA---------------D 149 (517)
T ss_dssp HHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHH-SSSCCTTCCEEEEH---------------H
T ss_pred HHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHh-ccCCccEEEEccCc---------------c
Confidence 9999999999999999999999999999999999999876655432211 11111111111110 1
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.+.+..... ..........++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++|.
T Consensus 150 ~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 223 (517)
T 3r44_A 150 SLAERLRSA-AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMFHV 223 (517)
T ss_dssp HHHHHHHHC-CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTTSH
T ss_pred cHHHHhhcc-CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchHHH
Confidence 233333322 122233445789999999999999999999999999999998887776 78899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 007672 279 LDRVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMN 357 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (594)
+++...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+......
T Consensus 224 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 280 (517)
T 3r44_A 224 AALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE----------------------- 280 (517)
T ss_dssp HHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHH-----------------------
T ss_pred HHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccccc-----------------------
Confidence 999876666669999998876 99999999999999999999999999876322111
Q ss_pred hccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-ccccC
Q 007672 358 MGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVG 436 (594)
Q Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~ 436 (594)
.++ ++||.+++||+++++++.+.+... ++.+++.||+||+++.++...... ....+
T Consensus 281 --------------~~~--------~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 337 (517)
T 3r44_A 281 --------------LDA--------PDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRKAG 337 (517)
T ss_dssp --------------CCC--------TTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTTTT
T ss_pred --------------CCC--------CcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCccccccCC
Confidence 112 389999999999999999999887 999999999999998776654332 33458
Q ss_pred ccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccC
Q 007672 437 TAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKK 516 (594)
Q Consensus 437 ~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~ 516 (594)
++|+|.++++++|+| +++...+ .| .|||+|+|++++.||+++++.+++.|.+|||+|||+|++|+||+|++.||.|
T Consensus 338 ~~G~~~~~~~~~i~d-~~~~~~~--~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d 413 (517)
T 3r44_A 338 SAGRATMFTDVAVRG-DDGVIRE--HG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLK 413 (517)
T ss_dssp CCBEECTTEEEEEEC-TTSCEES--SE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGG
T ss_pred CCCcCCCCeEEEEEC-CCCCCCC--CC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCc
Confidence 999999999999999 6554443 34 7999999999999999999999999999999999999999999999999999
Q ss_pred ceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcc-cccccceee--------eEeeeec------C
Q 007672 517 NLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRR-RHQKVGILE--------WSCWFIP------G 575 (594)
Q Consensus 517 d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~-~~~~~~~~~--------~~~~~~p------~ 575 (594)
|+||+ +|++|+|.|||++|.+||+|.+|+|++++++ ++++. .....+..+ ++.|++| +
T Consensus 414 d~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~ 492 (517)
T 3r44_A 414 DMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAE 492 (517)
T ss_dssp GCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEECS
T ss_pred CEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEEC
Confidence 99996 8999999999999999999999999998775 23332 222222222 2445554 4
Q ss_pred ceeeecccccccccccc
Q 007672 576 TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ~i~~~~~gk~~r~~~~~ 592 (594)
.||+|++||++|+++++
T Consensus 493 ~lP~t~~GKi~R~~L~~ 509 (517)
T 3r44_A 493 AIPRNPTGKILKTVLRE 509 (517)
T ss_dssp CCCBCTTCCBCHHHHHH
T ss_pred CCCCCCCcCccHHHHHH
Confidence 79999999999999886
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.7e-71 Score=601.03 Aligned_cols=473 Identities=19% Similarity=0.188 Sum_probs=383.2
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+|+++|+++++++++|
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH----HHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
|+++|++++|++|.++.+++.+++++++++++|+++.... .....+....+.++.++..++..
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 161 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE------------- 161 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT-------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc-------------
Confidence 9999999999999999999999999999999999875321 11111111223444555444321
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
.|.++.... ..........++++++++|||||||.||+|+++|+++++.+......+ ++..+|++++.+|++
T Consensus 162 --~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 162 --EFLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp --TSEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred --chhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 111111111 111122345688999999999999999999999999999988877776 788999999999999
Q ss_pred HHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 007672 277 HILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKL 353 (594)
Q Consensus 277 ~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (594)
|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 6778999999999876 99999999999999999999999999876432111
Q ss_pred HHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCcc
Q 007672 354 AWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMC 433 (594)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~ 433 (594)
.++ ++||.+++||+++++++.+.+.+.+|+.+++.||+||++............
T Consensus 295 ------------------~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 ------------------DDL--------SSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp ------------------CCC--------TTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ------------------CCc--------cceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 112 289999999999999999999988899999999999965433322111122
Q ss_pred ccCccccCccCc-eEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEE
Q 007672 434 MVGTAGPVSVYS-ELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKI 511 (594)
Q Consensus 434 ~~~~~G~~~~~~-~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~ 511 (594)
..+++|+|+++. +++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++|+||+|++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDRD--VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSCB--CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCCC--CcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 347899999765 799999 66554 4456999999999999999999999999999 799999999999999999999
Q ss_pred EeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc-ccccee--------e-eEeeeec-
Q 007672 512 IDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH-QKVGIL--------E-WSCWFIP- 574 (594)
Q Consensus 512 ~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~-~~~~~~--------~-~~~~~~p- 574 (594)
.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++.. ...+.. . ++.|++|
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~ 504 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPD 504 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCS
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCC
Confidence 9999999996 8999999999999999999999999998764 3444332 111111 1 3444444
Q ss_pred -----Cceeeecccccccccccc
Q 007672 575 -----GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 575 -----~~i~~~~~gk~~r~~~~~ 592 (594)
+.||+|++||++|+++++
T Consensus 505 ~i~~v~~lP~t~~GKi~r~~L~~ 527 (539)
T 1mdb_A 505 RVEFVESFPQTGVGKVSKKALRE 527 (539)
T ss_dssp EEEECSSCCBCTTSCBCHHHHHH
T ss_pred EEEEeccCCCCCCcCEeHHHHHH
Confidence 568999999999999875
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.4e-70 Score=591.74 Aligned_cols=497 Identities=24% Similarity=0.266 Sum_probs=392.8
Q ss_pred CccccccccCCCCCCCCCCcCcHHH-HHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCC
Q 007672 22 GPVYRNLLASNGFPSVDSDLNTAWD-IFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEP 100 (594)
Q Consensus 22 ~~~~r~~~~~~~~~~~~~~~~tl~~-~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~ 100 (594)
+.++++....... +...++.+ +|.++++++ |++|+++. ++ + +++||+||.++++++|+.|++.|+++
T Consensus 9 ~~~~~~~~~~~~~----p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~--~--~~~Ty~el~~~~~~lA~~L~~~Gv~~ 76 (548)
T 2d1s_A 9 NIVVGPKPFYPIE----EGSAGTQLRKYMERYAKL-GAIAFTNA---VT--G--VDYSYAEYLEKSCCLGKALQNYGLVV 76 (548)
T ss_dssp TSEECCCCSSCCC----SSCHHHHHHHHHHHHHHH-TCEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHHHTCCT
T ss_pred ceEecCCCCCCCC----CCcCcHHHHHHHhhhccc-CCceEEEc---CC--C--CEeeHHHHHHHHHHHHHHHHHcCCCC
Confidence 3566655422222 23468999 899999999 99999863 21 1 58999999999999999999999999
Q ss_pred CCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEec
Q 007672 101 GCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFT 180 (594)
Q Consensus 101 gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~ 180 (594)
||+|+|+++|+++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.... ...+....++.++
T Consensus 77 gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~ 155 (548)
T 2d1s_A 77 DGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQ-KTVTTIKTIVILD 155 (548)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHH-HHSTTCCEEEETT
T ss_pred CCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHh-cCCCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999987665543221 1122234555554
Q ss_pred CCcHHHHHHHhhCCcceeeHHHHHhcccccccccCCC------CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhh
Q 007672 181 SLTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPP------QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDL 254 (594)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~ 254 (594)
.... ......|+++.............. .++++++++|||||||.||+|++||+++.+.+.....
T Consensus 156 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~ 226 (548)
T 2d1s_A 156 SKVD---------YRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226 (548)
T ss_dssp CSSC---------BTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTC
T ss_pred Cccc---------ccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhc
Confidence 3210 001234666655431110111111 2389999999999999999999999999988877655
Q ss_pred hhccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHH
Q 007672 255 FLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKK 332 (594)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~ 332 (594)
.+ ...++.++|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..|.+..
T Consensus 227 ~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-- 301 (548)
T 2d1s_A 227 PI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE-- 301 (548)
T ss_dssp TT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS--
T ss_pred hh--hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc--
Confidence 41 0126788999999999999999876 45566 9999999876 9999999999999999999999999886421
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCce
Q 007672 333 ALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFL 411 (594)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i 411 (594)
..+..+++ +||.+++||+++++++.+.+.+.+ ++.+
T Consensus 302 -----------------------------------~~~~~~l~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~i 338 (548)
T 2d1s_A 302 -----------------------------------LLNKYDLS--------NLVEIASGGAPLSKEVGEAVARRFNLPGV 338 (548)
T ss_dssp -----------------------------------CGGGSCCT--------TCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred -----------------------------------cccccccc--------ceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence 11112233 899999999999999999999988 6889
Q ss_pred EeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-
Q 007672 412 VQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI- 490 (594)
Q Consensus 412 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~- 490 (594)
++.||+||++.+++...... ...+++|+|+++++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+.+.|
T Consensus 339 ~~~YG~TE~~~~~~~~~~~~-~~~~~~G~~~~~~~~~i~d~~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 415 (548)
T 2d1s_A 339 RQGYGLTETTSAIIITPEGD-DKPGASGKVVPLFKAKVIDLDTKK--SLGPNRRGEVCVKGPMLMKGYVNNPEATKELID 415 (548)
T ss_dssp EEEEECGGGSSEEEECCTTC-CCTTCCBEECTTCEEEEECTTTCC--BCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred eeccccccccceeeecCccc-CCCCCCCccCCCceEEEEeCCcCc--cCCCCCCeEEEECCHHHhhhhcCChHHhhhccc
Confidence 99999999998776643332 344899999999999999943443 44566999999999999999999999999999
Q ss_pred cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--c
Q 007672 491 IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--K 562 (594)
Q Consensus 491 ~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~ 562 (594)
.+|||+|||+|++|+||+|++.||.||+||+ +|++|+|.+||++|.+||+|.+|+|++++++ +++++... .
T Consensus 416 ~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~ 494 (548)
T 2d1s_A 416 EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKN 494 (548)
T ss_dssp TTSCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC
T ss_pred CCcEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCC
Confidence 7999999999999999999999999999996 8999999999999999999999999998874 34443221 1
Q ss_pred cceee--------eEe-------eeecCceeeecccccccccccc
Q 007672 563 VGILE--------WSC-------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 563 ~~~~~--------~~~-------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+..+ +.. +...+.||+|++||++|+++++
T Consensus 495 ~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~ 539 (548)
T 2d1s_A 495 MTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIRE 539 (548)
T ss_dssp CCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHH
T ss_pred CCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHH
Confidence 22211 122 4445579999999999999875
No 10
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2e-70 Score=589.27 Aligned_cols=469 Identities=22% Similarity=0.262 Sum_probs=325.5
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|+++++++++
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4578999999999999999999875 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|++|.++.+++.+++++++++++|++......+.... ........++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-PSLGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHG-GGCSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhh-cccCCceEEEEcCCCCc--------------C
Confidence 99999999999999999999999999999999999988766543332 23345566666654211 2
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
+.++...............++++++++|||||||.||+|+++|+++++.+......+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222333456789999999999999999999999999999998887776 789999999999999999
Q ss_pred HHHHHHHhhh-cCcEEEEecCChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhh
Q 007672 280 DRVIEEYFFR-RGASVGYYHGDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNM 358 (594)
Q Consensus 280 ~~~~~l~~l~-~G~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (594)
++...+.++. .|+++++...++..+++.|+++++|+++++|+++..|++..
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~---------------------------- 266 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA---------------------------- 266 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----------------------------
Confidence 9987666554 45555444449999999999999999999999999987532
Q ss_pred ccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCCccccCc
Q 007672 359 GYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDEMCMVGT 437 (594)
Q Consensus 359 ~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~ 437 (594)
...++ +++|.++.+|++ ++.+.+.+.+ ++.+++.||+||++++++........ ..
T Consensus 267 -----------~~~~l--------~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~--~~ 322 (509)
T 3ivr_A 267 -----------APAQL--------ASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDRP--KS 322 (509)
T ss_dssp -----------CGGGG--------TTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGST--TS
T ss_pred -----------cccch--------hhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccCC--Cc
Confidence 00112 289999999987 7788888877 99999999999999877765443322 45
Q ss_pred cccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEecc--
Q 007672 438 AGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRK-- 515 (594)
Q Consensus 438 ~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~-- 515 (594)
+|+|+++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+|++.||.
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~--~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRP--LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCB--CCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCCCC--CCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 99999999999999 66554 45569999999999999999999999999999999999999999999999999999
Q ss_pred CceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc--ccccceee--------eEeeeec-----
Q 007672 516 KNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR--HQKVGILE--------WSCWFIP----- 574 (594)
Q Consensus 516 ~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~--~~~~~~~~--------~~~~~~p----- 574 (594)
+|+||+ +|++|+|.+||++|.+||+|.+|+|++++++ +++++. +...+..+ ++.|++|
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~ 478 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVF 478 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEE
Confidence 999996 8999999999999999999999999998875 333332 22222222 2335554
Q ss_pred -CceeeeccccccccccccC
Q 007672 575 -GTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 575 -~~i~~~~~gk~~r~~~~~~ 593 (594)
+.||+|++||++|+++|+-
T Consensus 479 v~~lP~t~~GKidr~~Lr~~ 498 (509)
T 3ivr_A 479 VEALPKDAKGAIDRAAVKTA 498 (509)
T ss_dssp --------------------
T ss_pred ecCCCCCCCCCccHHHHHHH
Confidence 5689999999999999873
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=4e-70 Score=585.91 Aligned_cols=466 Identities=20% Similarity=0.242 Sum_probs=373.9
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
|+|+.++|+++++++||++|+++. +.. +++||+||.++++++|+.|+++|+++||+|+|+++|+++++++++|
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 321 7899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEE--cchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFV--QDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
|+++|++++|++|.++.+++.+++++++++++|+ +......+.... ...+ ++.
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~~-------------------- 128 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-IIF-------------------- 128 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EEE--------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eEE--------------------
Confidence 9999999999999999999999999999999999 665443331111 1111 221
Q ss_pred eHHHHHhccc----ccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCC--CCCcEEEEe
Q 007672 199 SWDEFLHLGK----VNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKM--TVDDVYLSF 272 (594)
Q Consensus 199 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 272 (594)
++++..... ..........++++++++|||||||.||+|+++|+++.+.+......+ ++ ..++++++.
T Consensus 129 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 129 -LGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp -GGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred -ecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 222211110 011111345678999999999999999999999999999888776655 56 788999999
Q ss_pred cChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 007672 273 LPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYK 350 (594)
Q Consensus 273 ~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 350 (594)
+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+.....
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----------------- 265 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHA----------------- 265 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCT-----------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccc-----------------
Confidence 99999999854 7778999999999876 9999999999999999999999999987532100
Q ss_pred HHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCC
Q 007672 351 YKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPD 430 (594)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~ 430 (594)
....++ ++||.+++||+++++++.+.+.+.+++.+++.||+||++ ++....
T Consensus 266 ------------------~~~~~l--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 266 ------------------GSSLKL--------DSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp ------------------TCCCCC--------TTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred ------------------cccccC--------ccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 000112 289999999999999999999999999999999999993 332222
Q ss_pred CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEc-cCCcccccCCCchhhhhcccCCccccCceEEEcCCCcE
Q 007672 431 EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-GKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVV 509 (594)
Q Consensus 431 ~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~-g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l 509 (594)
....+++|.|.++++++|+|.+++...+++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|++|+||+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1233789999999999999933322345666799999999 99999999999999999999999999999999999999
Q ss_pred EEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--ccce--------e-eeEeee
Q 007672 510 KIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGI--------L-EWSCWF 572 (594)
Q Consensus 510 ~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~--------~-~~~~~~ 572 (594)
++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..+. . .++.|+
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~ 474 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSELADFK 474 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGG
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccc
Confidence 999999999996 8999999999999999999999999998774 34444321 1111 1 244444
Q ss_pred ec------Cceeeecccccccccccc
Q 007672 573 IP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 573 ~p------~~i~~~~~gk~~r~~~~~ 592 (594)
+| +.||+|++||++|+++++
T Consensus 475 ~P~~i~~v~~lP~t~~GKi~r~~L~~ 500 (504)
T 1t5h_X 475 RPKRYFILDQLPKNALNKVLRRQLVQ 500 (504)
T ss_dssp SCSEEEECSCCCBCTTSCBCHHHHHH
T ss_pred cceEEEEhhhCCCCCCCCEeHHHHHH
Confidence 44 568999999999999875
No 12
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.1e-70 Score=589.63 Aligned_cols=468 Identities=22% Similarity=0.293 Sum_probs=376.5
Q ss_pred HHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcC
Q 007672 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALS 125 (594)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G 125 (594)
++|.++++++|+++|+.+. +.. + +++||+||.++++++|+.|+++|+++||+|+|+++|+++++++++||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~-~--~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAA-G--DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETT-C--CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCC-C--cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5788999999999999864 211 1 589999999999999999999999999999999999999999999999999
Q ss_pred CEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHHHHHh
Q 007672 126 LICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWDEFLH 205 (594)
Q Consensus 126 ~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (594)
++++|++|.++.+++.+++++++++++|++......+....... . ..+..++.... ..+.....
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999987654332211110 1 13333332211 01111111
Q ss_pred cccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHH-H
Q 007672 206 LGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVI-E 284 (594)
Q Consensus 206 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~ 284 (594)
.. ..........++++++++|||||||.||+|+++|+++.+.+......+ ++.++|++++.+|++|.+++.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 112223345789999999999999999999999999999998887776 7899999999999999999765 6
Q ss_pred HHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCC
Q 007672 285 EYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQR 363 (594)
Q Consensus 285 l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (594)
+.++..|+++++.+. ++..+++.++ ++|+++++|+++..+++...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 678899999998876 9999999998 89999999999998864211
Q ss_pred CcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCcc
Q 007672 364 EASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSV 443 (594)
Q Consensus 364 ~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~ 443 (594)
....++ +++|.+++||+++++++.+.+.+.+++.+++.||+||++..+.... ......+++|+|++
T Consensus 262 -----~~~~~~--------~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTKETT--------GHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CSTTTT--------TTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----ccccch--------hhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 111112 3899999999999999999999989999999999999987754333 23334488999999
Q ss_pred CceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcC
Q 007672 444 YSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKIS 522 (594)
Q Consensus 444 ~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~ 522 (594)
+++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+||+|++.||.||+||+
T Consensus 328 ~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTDPETGK--ELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEECTTTCC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEECCCCC--CCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 9999999944444 44566999999999999999999999999999 6999999999999999999999999999997
Q ss_pred CceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc--cccee--------eeEeeeec------Cceeee
Q 007672 523 QGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ--KVGIL--------EWSCWFIP------GTLFTC 580 (594)
Q Consensus 523 ~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~--~~~~~--------~~~~~~~p------~~i~~~ 580 (594)
+|++|+|.|||++|.+||+|.+|+|++++++ +++++... ..+.. .++.|++| +.||+|
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t 484 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRN 484 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBC
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCC
Confidence 7999999999999999999999999998774 33333221 12211 22444444 568999
Q ss_pred cccccccccccc
Q 007672 581 SATKLYPLRAEE 592 (594)
Q Consensus 581 ~~gk~~r~~~~~ 592 (594)
++||++|+++++
T Consensus 485 ~~GKi~R~~L~~ 496 (503)
T 4fuq_A 485 TMGKVQKNVLRE 496 (503)
T ss_dssp TTSCBCHHHHHH
T ss_pred cccceeHHHHHH
Confidence 999999999876
No 13
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=4.4e-70 Score=593.95 Aligned_cols=459 Identities=20% Similarity=0.194 Sum_probs=316.3
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
.+...++.++|+++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 141 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA 141 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999875 3 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcce
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP 197 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 197 (594)
++||+++|++++|++|.++.+++.+++++++++++|++......+ .....+.. .+...
T Consensus 142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~-~~~~~------------- 199 (570)
T 4gr5_A 142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYV-EDEAA------------- 199 (570)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEEC-CC----------------
T ss_pred HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceee-ecccc-------------
Confidence 999999999999999999999999999999999999997654332 11112211 11100
Q ss_pred eeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhH
Q 007672 198 YSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAH 277 (594)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~ 277 (594)
.............++++++++|||||||.||+|+++|+++.+.+... ..+ ++.+++++++.+|++|
T Consensus 200 --------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 200 --------SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTS
T ss_pred --------ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccH
Confidence 00011112234578999999999999999999999999998776652 222 6788999999999998
Q ss_pred HHHHHHHHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 278 ILDRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 278 ~~~~~~~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
..+...++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------------------- 323 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---------------------- 323 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh----------------------
Confidence 7776677889999999999763 899999999999999999999999998653110
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC--
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-- 431 (594)
++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 324 ------------------~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~ 377 (570)
T 4gr5_A 324 ------------------AF--------EGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD 377 (570)
T ss_dssp ------------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred ------------------hC--------CCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence 11 2899999999999999988888776 899999999999988766543322
Q ss_pred -ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cC--------CccccCceE
Q 007672 432 -MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-ID--------GWFHTGDIG 501 (594)
Q Consensus 432 -~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~--------g~~~TGDlg 501 (594)
.....++|+|+++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.| .+ |||+|||+|
T Consensus 378 ~~~~~~~iG~p~~~~~v~i~d-~~~~~--~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 378 LSGTALPIGVPLAGKRAYVLD-DDLKP--AANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp TTSSSCCCBEECTTEEEEEEC-TTSCB--CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cCCCccccceeeCCCEEEEEC-CCCCC--CCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 12235799999999999999 66554 4456999999999999999999999999998 43 699999999
Q ss_pred EEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccc---cccceeee----
Q 007672 502 QILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRH---QKVGILEW---- 568 (594)
Q Consensus 502 ~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~---~~~~~~~~---- 568 (594)
++|+||+|++.||+||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++.. ...+..++
T Consensus 455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~l~~~l 533 (570)
T 4gr5_A 455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDAAELRRHV 533 (570)
T ss_dssp EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCcCHHHHHHHH
Confidence 99999999999999999997 8999999999999999999999999998764 3443321 11222222
Q ss_pred ----Eeeee------cCceeeeccccccccccccC
Q 007672 569 ----SCWFI------PGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 569 ----~~~~~------p~~i~~~~~gk~~r~~~~~~ 593 (594)
+.|++ .+.||+|++||++|+++++.
T Consensus 534 ~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 534 AEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------
T ss_pred HhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 33444 45799999999999999874
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3e-69 Score=586.38 Aligned_cols=481 Identities=19% Similarity=0.205 Sum_probs=390.3
Q ss_pred CCCcCcHHHHHHHHHHc-----CCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCc
Q 007672 38 DSDLNTAWDIFSMSVQK-----YPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANC 111 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~-----~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~ 111 (594)
+...+++.++|++++++ +||++|+++. +. .|..+++||+||.++++++|++|++. |+++||+|+|+++|+
T Consensus 34 ~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~-~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~ 109 (570)
T 3c5e_A 34 PAKFNFASDVLDHWADMEKAGKRPPSPALWWV---NG-KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRV 109 (570)
T ss_dssp CSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CS-SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSC
T ss_pred CccccHHHHHHHHHHhhccccCCCCceEEEEE---cC-CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCC
Confidence 34567788999999999 9999999976 42 23347899999999999999999999 999999999999999
Q ss_pred hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHh
Q 007672 112 PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAV 191 (594)
Q Consensus 112 ~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 191 (594)
++++++++||+++|++++|+++.++.+++.+++++++++++|++......+.... ...+.++.++.+++...
T Consensus 110 ~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------- 181 (570)
T 3c5e_A 110 PEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVA-SECPSLRIKLLVSEKSC------- 181 (570)
T ss_dssp HHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHG-GGCTTCCEEEEESSSCC-------
T ss_pred HHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHh-hcCCceeEEEEecccCc-------
Confidence 9999999999999999999999999999999999999999999987665543322 22344556666554211
Q ss_pred hCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHH--HHhhhhhhhccccCCCCCCcEE
Q 007672 192 QTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIAT--FVSGVDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 269 (594)
.....+++++..... ........++++++++|||||||.||+|+++|+ ++. ..... ..+ ++..+|++
T Consensus 182 ---~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~ 250 (570)
T 3c5e_A 182 ---DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIM 250 (570)
T ss_dssp ---TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEE
T ss_pred ---cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceE
Confidence 123456666654322 122234568999999999999999999999999 544 33332 333 67899999
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEec---CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYH---GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIF 345 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~---~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~ 345 (594)
++.+|++|.+++.. ++.++..|+++++.. .++..+++.|+++++|+++++|++++.|.+..
T Consensus 251 ~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~--------------- 315 (570)
T 3c5e_A 251 WTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD--------------- 315 (570)
T ss_dssp EECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---------------
T ss_pred EEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---------------
Confidence 99999999999874 677899999999885 28999999999999999999999999886420
Q ss_pred HHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCcee
Q 007672 346 DALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTT 425 (594)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~ 425 (594)
....++ ++||.+++||+++++++.+.+.+.+|+.+++.||+||++.+++
T Consensus 316 -----------------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~ 364 (570)
T 3c5e_A 316 -----------------------LSSYKF--------PHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCM 364 (570)
T ss_dssp -----------------------TTTCCC--------TTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEE
T ss_pred -----------------------cccccc--------ccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhccccee
Confidence 001112 2899999999999999999999888999999999999987665
Q ss_pred ccCCCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEc-----cCCcccccCCCchhhhhcccCCccccCce
Q 007672 426 VCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVR-----GKTLFSGYYKNPDLTRESIIDGWFHTGDI 500 (594)
Q Consensus 426 ~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~-----g~~v~~gY~~~~~~~~~~~~~g~~~TGDl 500 (594)
..... ....+++|+|+++++++|+| +++.. ++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+
T Consensus 365 ~~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~--~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl 440 (570)
T 3c5e_A 365 VSKTM-KIKPGYMGTAASCYDVQIID-DKGNV--LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR 440 (570)
T ss_dssp CCTTS-CCCTTCCCEECTTCCEEEEC-TTSCB--CCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred cCccc-ccCCCcccccCCCceEEEEC-CCCCC--CCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence 54332 23348999999999999999 66654 445699999999 99999999999999999999999999999
Q ss_pred EEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccc-------cee-
Q 007672 501 GQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV-------GIL- 566 (594)
Q Consensus 501 g~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~-------~~~- 566 (594)
|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++..... ...
T Consensus 441 g~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~ 519 (570)
T 3c5e_A 441 GIKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE 519 (570)
T ss_dssp EEECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHH
T ss_pred EEEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHH
Confidence 999999999999999999996 8999999999999999999999999998764 3444322111 011
Q ss_pred -------eeEeee------ecCceeeecccccccccccc
Q 007672 567 -------EWSCWF------IPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 567 -------~~~~~~------~p~~i~~~~~gk~~r~~~~~ 592 (594)
.++.|+ ..+.||+|++||++|+++++
T Consensus 520 l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 558 (570)
T 3c5e_A 520 LQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRD 558 (570)
T ss_dssp HHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHH
T ss_pred HHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHH
Confidence 123344 44568999999999999875
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.3e-69 Score=598.06 Aligned_cols=493 Identities=16% Similarity=0.180 Sum_probs=393.4
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|
T Consensus 74 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~l 150 (652)
T 1pg4_A 74 TLNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAML 150 (652)
T ss_dssp EECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHH
T ss_pred ChhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578899999999999999999986 4444556899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH---------HHhcccccc-cccccEEEEecCCcHHHHHH
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK---------ELLSPDCRS-AQRLRVMVCFTSLTAEQKEM 189 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~---------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 189 (594)
||+++|++++|+++.++.+++.+++++++++++|+++.... .+....... ...++.+++++......
T Consensus 151 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~--- 227 (652)
T 1pg4_A 151 ACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDI--- 227 (652)
T ss_dssp HHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCC---
T ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcc---
Confidence 99999999999999999999999999999999999875421 111111110 01345666665321100
Q ss_pred HhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHh-hhhhhhccccCCCCCCcE
Q 007672 190 AVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVS-GVDLFLDQFEDKMTVDDV 268 (594)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~-~~~~~~~~~~~~~~~~~~ 268 (594)
.........|++++..... ........++++++++|||||||.||||+++|++++..+. .....+ ++.++|+
T Consensus 228 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~ 300 (652)
T 1pg4_A 228 -DWQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDI 300 (652)
T ss_dssp -CCCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCE
T ss_pred -cccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCE
Confidence 0000123567777754321 1223345689999999999999999999999999887664 333344 7889999
Q ss_pred EEEecChhHHHHHH-HHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHH
Q 007672 269 YLSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRR 342 (594)
Q Consensus 269 ~~~~~pl~~~~~~~-~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~ 342 (594)
+++..|++|..++. .++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+....
T Consensus 301 ~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---------- 370 (652)
T 1pg4_A 301 YWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDK---------- 370 (652)
T ss_dssp EEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGG----------
T ss_pred EEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCcc----------
Confidence 99999999999985 47789999999999863 789999999999999999999999988642110
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC---CceEeeecccC
Q 007672 343 RIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTE 419 (594)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~yG~tE 419 (594)
..+..+++ +||.+++||+++++++.+++.+.+| +.+++.||+||
T Consensus 371 -------------------------~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE 417 (652)
T 1pg4_A 371 -------------------------AIEGTDRS--------SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417 (652)
T ss_dssp -------------------------GTTTCCCT--------TCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGG
T ss_pred -------------------------ccccCCcC--------ceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcc
Confidence 01112233 8999999999999999999998887 89999999999
Q ss_pred CCCceeccCCC-CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cCC
Q 007672 420 TCGPTTVCFPD-EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---IDG 493 (594)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~g 493 (594)
+++.++...+. .....+++|+|++|++++|+| +++..+ +.|+.|||+|+| |+++.|||++++.+.+.| .+|
T Consensus 418 ~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v--~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g 494 (652)
T 1pg4_A 418 TGGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQ--EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN 494 (652)
T ss_dssp GSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBC--CSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred cccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCc--CCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence 99876665443 233458999999999999999 666544 455899999999 799999999999888776 389
Q ss_pred ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce--
Q 007672 494 WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI-- 565 (594)
Q Consensus 494 ~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~-- 565 (594)
||+|||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.+.....
T Consensus 495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~ 573 (652)
T 1pg4_A 495 MYFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP 573 (652)
T ss_dssp SEEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH
T ss_pred EEECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCH
Confidence 9999999999999999999999999997 7999999999999999999999999998764 444443321111
Q ss_pred ---ee--------eEe------eeecCceeeecccccccccccc
Q 007672 566 ---LE--------WSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 ---~~--------~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
.+ +.. +.....||+|++||++|+.+++
T Consensus 574 ~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 617 (652)
T 1pg4_A 574 ELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRK 617 (652)
T ss_dssp HHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHH
Confidence 11 123 4445569999999999999875
No 16
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=3e-69 Score=585.53 Aligned_cols=458 Identities=20% Similarity=0.257 Sum_probs=373.5
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
+...++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578999999999999999999864 3 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCccee
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPY 198 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 198 (594)
+||+++|++++|+++.++.+++.+++++++++++|++......+.... ....+..++....
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~-----~~~~~~~~~~~~~-------------- 167 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ-----FNGQVEIFEEDTI-------------- 167 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC-----CCSEEEECCCSTT--------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc-----ccCceeeecchhh--------------
Confidence 999999999999999999999999999999999999987654432211 1112222222100
Q ss_pred eHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 199 SWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
... .......+..++++++++|||||||.||||++||+++.+.+......+ ++.++|++++.+|++|.
T Consensus 168 ------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 235 (563)
T 1amu_A 168 ------KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFD 235 (563)
T ss_dssp ------TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTST
T ss_pred ------ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHH
Confidence 000 011112334678999999999999999999999999998888776665 78899999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+...
T Consensus 236 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 290 (563)
T 1amu_A 236 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------- 290 (563)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------
T ss_pred HHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------
Confidence 988777889999999998764 889999999999999999999998776320
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC--c
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE--M 432 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~--~ 432 (594)
.+ +++|.+++||+++++++.+.+.+ .+.+++.||+||++.+++...... .
T Consensus 291 ------------------~~--------~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~ 342 (563)
T 1amu_A 291 ------------------RI--------LSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETI 342 (563)
T ss_dssp ------------------TC--------CSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred ------------------cc--------ccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccC
Confidence 01 28999999999999999999876 478999999999998766543322 2
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc-------CCccccCceEEEcC
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII-------DGWFHTGDIGQILP 505 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 505 (594)
....++|+|+++++++|+| +++..+ +.|+.|||+|+|++++.||+++++.+++.|. ++||+|||+|++|+
T Consensus 343 ~~~~~vG~p~~~~~v~i~d-~~~~~~--~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~ 419 (563)
T 1amu_A 343 GHSVPIGAPIQNTQIYIVD-ENLQLK--SVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 419 (563)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBC--CTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred CCCCcccceeCCCEEEEEC-CCcCCC--CCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC
Confidence 2346899999999999999 666544 4568999999999999999999999999983 24999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccceeee--------Eee
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGILEW--------SCW 571 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~~~--------~~~ 571 (594)
||+|++.||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++.....+..++ +.|
T Consensus 420 dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y 498 (563)
T 1amu_A 420 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTY 498 (563)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCCCHHHHHHHHHHHSCGG
T ss_pred CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCCCHHHHHHHHHhhCchh
Confidence 9999999999999997 8999999999999999999999999998763 444444333322222 334
Q ss_pred ee------cCceeeeccccccccccccC
Q 007672 572 FI------PGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 572 ~~------p~~i~~~~~gk~~r~~~~~~ 593 (594)
++ .+.||+|++||++|+++++.
T Consensus 499 ~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 526 (563)
T 1amu_A 499 MIPSYFIQLDKMPLTSNGKIDRKQLPEP 526 (563)
T ss_dssp GSCSEEEECSSCCBCTTSSBCGGGSCCC
T ss_pred hCCcEEEEecccCCCCCcChhHHhcCCc
Confidence 44 45799999999999999874
No 17
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=3.8e-69 Score=582.04 Aligned_cols=480 Identities=19% Similarity=0.210 Sum_probs=374.8
Q ss_pred CCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEA 117 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~ 117 (594)
|..++++.++|+++++ +||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++
T Consensus 20 p~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 89 (529)
T 2v7b_A 20 PALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVA 89 (529)
T ss_dssp --CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHH
T ss_pred ccceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHH
Confidence 4566779999999999 9999999864 3 4799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccc-cEEEEecCCcHHHHHHHhhCCcc
Q 007672 118 MEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRL-RVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 118 ~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
++||+++|++++|+++.++.+++.+++++++++++|++......+..... ..... ..++..+.... ....
T Consensus 90 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~~~ 160 (529)
T 2v7b_A 90 FLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALE-SAEHDGCQLIVSQPRES--------EPRL 160 (529)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHH-CC---CCEEEEECC--------------C
T ss_pred HHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHh-hccccCceEEEeccccc--------cccc
Confidence 99999999999999999999999999999999999999876654432211 11222 34444433211 0011
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhH-HHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETI-ATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
...|+++...... ........++++++++|||||||.||+|+++|+++ .+........+ ++.++|++++.+|+
T Consensus 161 ~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~ 234 (529)
T 2v7b_A 161 APLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKL 234 (529)
T ss_dssp CCBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCT
T ss_pred ccchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecH
Confidence 2246666543211 12223457899999999999999999999999999 56655544444 67889999999999
Q ss_pred hHHHHHHH-HHHhhhcCcEEEEec-C-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007672 276 AHILDRVI-EEYFFRRGASVGYYH-G-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (594)
Q Consensus 276 ~~~~~~~~-~l~~l~~G~~~~~~~-~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (594)
+|.+++.. .+.++..|+++++.+ . ++..+++.|+++++|+++++|+++..+++...
T Consensus 235 ~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--------------------- 293 (529)
T 2v7b_A 235 FFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPN--------------------- 293 (529)
T ss_dssp TSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTT---------------------
T ss_pred HHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcc---------------------
Confidence 99999875 567899999999873 3 89999999999999999999999988764210
Q ss_pred HHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCc
Q 007672 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 432 (594)
.... ...++|.+++||+++++++.+.+.+.+|+.+++.||+||++.+........
T Consensus 294 ----------------~~~~--------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~- 348 (529)
T 2v7b_A 294 ----------------LPAR--------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA- 348 (529)
T ss_dssp ----------------CCCG--------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-
T ss_pred ----------------cccc--------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-
Confidence 0000 002799999999999999999999988999999999999987666554443
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEE
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKII 512 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~ 512 (594)
...+++|.|+++++++|+| +++..+ +.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++|+||+|++.
T Consensus 349 ~~~~~~G~p~~~~~~~i~d-~~g~~~--~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~ 425 (529)
T 2v7b_A 349 VEYGTTGRPVPGYEIELRD-EAGHAV--PDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYA 425 (529)
T ss_dssp CCTTSCCEECTTCEEEEEC-TTSCBC--CTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEE
T ss_pred CccCCcccCCCCCEEEEEC-CCCCCC--CCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEe
Confidence 3348999999999999999 666544 4569999999999999999999999999999999999999999999999999
Q ss_pred eccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCC-----chhhccccccc--------cee-----eeEe----
Q 007672 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCS-----SCAMRRRHQKV--------GIL-----EWSC---- 570 (594)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~-----~~~~~~~~~~~--------~~~-----~~~~---- 570 (594)
||.||+||+ +|++|+|.+||++|.+||+|.+|+|+++.. .+++++..... .+. .++.
T Consensus 426 GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P 504 (529)
T 2v7b_A 426 GRSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYP 504 (529)
T ss_dssp EEGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSC
T ss_pred CccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCC
Confidence 999999997 899999999999999999999999999822 13333322111 011 1222
Q ss_pred --eeecCceeeecccccccccccc
Q 007672 571 --WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 571 --~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+...+.||+|++||++|+++++
T Consensus 505 ~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 505 RDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp SEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEeccCCCCCccchhHHhHhh
Confidence 4445679999999999999986
No 18
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.6e-69 Score=593.13 Aligned_cols=476 Identities=18% Similarity=0.195 Sum_probs=389.1
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|.++++ ||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++++
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 35789999999988 999999865 3 689999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH----HHhcccccccccccEEEEecCCcHHHHHHHhhCCc
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK----ELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
||+++|++++|+++..+.+++.++++++++++++++..... .............+.+...++...
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999876531 111111112234455555444321
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
..+.+..... .......+..++++++++|||||||.||+|+++|+++.+.+......+ ++.+++++++++|+
T Consensus 163 --~~~~~~~~~~-~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHP-AEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSC-CSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhccc-ccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 1233333322 112223445689999999999999999999999999999999888777 78999999999999
Q ss_pred hHHHHHHH--HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007672 276 AHILDRVI--EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (594)
Q Consensus 276 ~~~~~~~~--~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (594)
+|.+++.. .+.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+........
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---------------- 298 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR---------------- 298 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence 99999874 6778999999999876 8999999999999999999999999987643221100
Q ss_pred HHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCc
Q 007672 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEM 432 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~ 432 (594)
.++ ++||.+++||+++++++.+.+.+.+++.+++.||+||++..++.......
T Consensus 299 -------------------~~l--------~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 299 -------------------AQL--------ASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp -------------------TTT--------TTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred -------------------ccC--------CCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 011 28999999999999999999999889999999999999865554433333
Q ss_pred cccCccccCc-cCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEE
Q 007672 433 CMVGTAGPVS-VYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVK 510 (594)
Q Consensus 433 ~~~~~~G~~~-~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~ 510 (594)
....++|.|+ ++.+++|+| +++..+ +.|+.|||+|+|+++++||+++++.+++.| .+|||+|||+|++++||+|+
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~~~--p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGNPL--PQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSCBC--CTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCCCCC--CCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3336789987 788999999 666544 456999999999999999999999999999 89999999999999999999
Q ss_pred EEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccccee---------eeEeeeecC
Q 007672 511 IIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGIL---------EWSCWFIPG 575 (594)
Q Consensus 511 ~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~---------~~~~~~~p~ 575 (594)
++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++........ .++.|++|+
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~ 507 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPD 507 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCS
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCc
Confidence 99999999997 7999999999999999999999999987664 3444333222211 245566654
Q ss_pred ------ceeeecccccccccccc
Q 007672 576 ------TLFTCSATKLYPLRAEE 592 (594)
Q Consensus 576 ------~i~~~~~gk~~r~~~~~ 592 (594)
.||+|++||+.|+++++
T Consensus 508 ~~~~v~~lP~t~~GKidR~~L~~ 530 (617)
T 3rg2_A 508 RVECVDSLPLTAVGKVDKKQLRQ 530 (617)
T ss_dssp EEEECSCCCBCTTSSBCHHHHHH
T ss_pred EEEEecccCCCCCCCCcHHHHHH
Confidence 69999999999999875
No 19
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.7e-69 Score=594.72 Aligned_cols=495 Identities=17% Similarity=0.199 Sum_probs=392.5
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALR-ASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~-~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
..+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++
T Consensus 80 ~~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~ 156 (663)
T 1ry2_A 80 QLNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITL 156 (663)
T ss_dssp EECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHH
T ss_pred CccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHH
Confidence 4578999999999999999999986 444455689999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHH--------HHhcccccccccccEEEEecCCcHHHHHHH
Q 007672 119 EACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVK--------ELLSPDCRSAQRLRVMVCFTSLTAEQKEMA 190 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 190 (594)
+||+++|++++|+++.++.+++.+++++++++++|+++.... .........++.++.+++++...... .
T Consensus 157 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~ 233 (663)
T 1ry2_A 157 LAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPS---V 233 (663)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSS---C
T ss_pred HHHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCc---c
Confidence 999999999999999999999999999999999999876421 11111112224456677665421100 0
Q ss_pred hhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhh-hhhhhccccCCCCCCcEE
Q 007672 191 VQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSG-VDLFLDQFEDKMTVDDVY 269 (594)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 269 (594)
........+|+++..... .........++++++++|||||||.||||+++|.+++..+.. ....+ ++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 000112356777765432 122334456899999999999999999999999998876543 33334 78899999
Q ss_pred EEecChhHHHHHH-HHHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 270 LSFLPLAHILDRV-IEEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 270 ~~~~pl~~~~~~~-~~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
++..|++|..++. .++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+...
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------ 375 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGD------------ 375 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCT------------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCc------------
Confidence 9999999999985 47789999999999863 78999999999999999999999998753210
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC---CceEeeecccCC
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC---AFLVQGYGLTET 420 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~---~~i~~~yG~tE~ 420 (594)
...+..+++ +||.+++||+++++++.+++.+.+| +.+++.||+||+
T Consensus 376 -----------------------~~~~~~~l~--------sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 376 -----------------------SYIENHSLK--------SLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp -----------------------TSSSSCCCT--------TCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred -----------------------cccccCCcC--------ceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 001112333 8999999999999999999999887 899999999999
Q ss_pred CCceeccCC--CCccccCccccCccCceEEeeecC-CCCCCCCCCCCCceEEEcc--CCcccccCCCchhhhhcc---cC
Q 007672 421 CGPTTVCFP--DEMCMVGTAGPVSVYSELRLEEVP-EMGYSPLDDPPCGEVCVRG--KTLFSGYYKNPDLTRESI---ID 492 (594)
Q Consensus 421 ~~~~~~~~~--~~~~~~~~~G~~~~~~~~~i~d~~-~~~~~~~~~~~~Gei~v~g--~~v~~gY~~~~~~~~~~~---~~ 492 (594)
++.+....+ ......+++|.|++|++++|+| + ++..++. .|+.|||+++| |+++.|||++++.+.+.| .+
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 987666543 2233458999999999999999 5 5544332 16899999999 589999999999988877 38
Q ss_pred CccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc--
Q 007672 493 GWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG-- 564 (594)
Q Consensus 493 g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~-- 564 (594)
|||+|||+|++|+||+|++.||.||+||+ +|++|+|.|||++|.+||+|.||+|+|++++ +++++.+....
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~ 581 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS 581 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc
Confidence 99999999999999999999999999997 7999999999999999999999999998874 44444322111
Q ss_pred -e---------ee--------eEe------eeecCceeeecccccccccccc
Q 007672 565 -I---------LE--------WSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 565 -~---------~~--------~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
. .+ +.. +.....||+|++||++|+.+|+
T Consensus 582 ~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~ 633 (663)
T 1ry2_A 582 TATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRK 633 (663)
T ss_dssp ------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHH
Confidence 0 11 122 4445579999999999999876
No 20
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1e-68 Score=586.14 Aligned_cols=455 Identities=18% Similarity=0.156 Sum_probs=366.4
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
...++.++|.++++++||++|+++. + +++||+||.++++++|++|+++|+++||+|+|+++|+++++++++
T Consensus 25 ~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~l 95 (620)
T 4dg8_A 25 AHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLL 95 (620)
T ss_dssp GSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 4578999999999999999999875 4 589999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceee
Q 007672 120 ACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYS 199 (594)
Q Consensus 120 A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 199 (594)
||+++|++++|++|.++.+++.++++++++++++++....... .....+ ....
T Consensus 96 ailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~-~~~~------------------ 148 (620)
T 4dg8_A 96 AILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV-PVRH------------------ 148 (620)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE-EGGG------------------
T ss_pred HHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee-eecc------------------
Confidence 9999999999999999999999999999999999765432211 011111 0000
Q ss_pred HHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHH
Q 007672 200 WDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHIL 279 (594)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~ 279 (594)
.. ............++++++++|||||||.||||+++|+++.+.+.. ...+ ++.+++++++..|++|..
T Consensus 149 ---~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~~ 217 (620)
T 4dg8_A 149 ---LP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFDA 217 (620)
T ss_dssp ---CC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTSTH
T ss_pred ---CC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHHH
Confidence 00 001111222346899999999999999999999999999887765 3333 688999999999999999
Q ss_pred HHHHHHHhhhcCcEEEEecC---ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 280 DRVIEEYFFRRGASVGYYHG---DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 280 ~~~~~l~~l~~G~~~~~~~~---~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
++..++.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+... .
T Consensus 218 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~--------------------- 273 (620)
T 4dg8_A 218 ATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP---D--------------------- 273 (620)
T ss_dssp HHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG---G---------------------
T ss_pred HHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh---h---------------------
Confidence 98888899999999998642 89999999999999999999999998864210 0
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC---c
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~---~ 432 (594)
++ ++||.+++||+++++++.+.+.+.+ ++.+++.||+||++.+++...... .
T Consensus 274 ----------------~l--------~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 329 (620)
T 4dg8_A 274 ----------------CL--------GGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLE 329 (620)
T ss_dssp ----------------GG--------TTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGGG
T ss_pred ----------------hC--------CCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEeccccccC
Confidence 11 2899999999999988887776655 899999999999998766543221 2
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccC--------CccccCceEEEc
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIID--------GWFHTGDIGQIL 504 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~--------g~~~TGDlg~~~ 504 (594)
....++|+|+++++++|+| +++.. .++.|+.|||+|+|+++++||+++++.+++.|.+ +||+|||+|+++
T Consensus 330 ~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~ 407 (620)
T 4dg8_A 330 EDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYD 407 (620)
T ss_dssp SSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEEC
T ss_pred CCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEEC
Confidence 2346899999999999999 55543 2445689999999999999999999999999943 799999999999
Q ss_pred CCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCch-----hhcccccccce----eeeEeeeec-
Q 007672 505 PNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSSC-----AMRRRHQKVGI----LEWSCWFIP- 574 (594)
Q Consensus 505 ~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~~-----~~~~~~~~~~~----~~~~~~~~p- 574 (594)
+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++. +++........ ..++.|++|
T Consensus 408 ~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~~~~~l~~~Lp~y~~P~ 486 (620)
T 4dg8_A 408 EQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADASPQALLRQLPTWQRPH 486 (620)
T ss_dssp TTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCHHHHHHSCGGGSCS
T ss_pred CCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHHHHHHHHHhChhhcCCc
Confidence 99999999999999998 79999999999999999999999999887641 11111111001 123444444
Q ss_pred -----Cceeeecccccccccccc
Q 007672 575 -----GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 575 -----~~i~~~~~gk~~r~~~~~ 592 (594)
+.||+|++||+.|+++++
T Consensus 487 ~~~~v~~lP~t~~GKidR~~L~~ 509 (620)
T 4dg8_A 487 ACVRVEALPLTAHGKLDRAALLR 509 (620)
T ss_dssp EEEECSSCCCC----CCHHHHHH
T ss_pred EEEEECcCCCCcccCHhHHHHhh
Confidence 568999999999999853
No 21
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=7e-69 Score=577.29 Aligned_cols=460 Identities=17% Similarity=0.183 Sum_probs=379.2
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEeCCchhHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRAS-GAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~-Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
+++.++|+++|+++||++|+++. + +++||+||.++++++|++|++. |.++|++|+++++|+++++++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 57999999999999999999864 3 6899999999999999999985 888999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++.++.+++.+++++++++++|++......... .. .....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------~~----------------------~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------QQ----------------------IQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------CS----------------------SCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------cc----------------------cceecH
Confidence 99999999999999999999999999999999997643211100 00 112344
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
+++...............++++++++|||||||.||+|++||+++.+.+......+ ++..++++++.+|++|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 55544332222223345688999999999999999999999999999998877776 7889999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999999764 78999999999999999999999998764210
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC----
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~---- 431 (594)
....++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 254 ------------~~~~~~--------~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FSQDLL--------PHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------cccccC--------CcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 111112 3899999999999999999999988 899999999999998766543221
Q ss_pred ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc--cCC--ccccCceEEEcCCC
Q 007672 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI--IDG--WFHTGDIGQILPNG 507 (594)
Q Consensus 432 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~--~~g--~~~TGDlg~~~~dG 507 (594)
.....++|.|+++++++|+| +++.. ++.|+.|||+|+|++++.||+++++.+++.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~~--~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQP--LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSCB--CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCCC--CCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12236799999999999999 66554 4556999999999999999999999999998 345 8999999999 599
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc---------ee-----e
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG---------IL-----E 567 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~---------~~-----~ 567 (594)
+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++++++ +++++...... +. .
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~ 468 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAAS 468 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHH
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhh
Confidence 99999999999997 8999999999999999999999999988764 33333222110 11 1
Q ss_pred eEe------eeecCceeeeccccccccccccC
Q 007672 568 WSC------WFIPGTLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 568 ~~~------~~~p~~i~~~~~gk~~r~~~~~~ 593 (594)
++. +...+.||+|++||++|+++|+.
T Consensus 469 L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~ 500 (511)
T 3e7w_A 469 LPAYMIPRKFIYQDHIQMTANGKIDRKRIGEE 500 (511)
T ss_dssp SCGGGSCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred CchhhCCeeEEEeccCCCCCCcCccHHHHHhH
Confidence 233 44456799999999999999863
No 22
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.6e-69 Score=579.58 Aligned_cols=471 Identities=21% Similarity=0.200 Sum_probs=357.3
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
+||.++|+++++++||++|+++. + +++||+||.++++++|+.|++. +||+|+|+++|+++++++++||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999865 3 5899999999999999999986 8999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcce-eeH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKP-YSW 200 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (594)
+++|++++|+++.++.+++.+++++++++++|++............ ......+.......... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccch
Confidence 9999999999999999999999999999999999765443321110 01111111100000000 00000000 001
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
+.+...............++++++++|||||||.||+|+++|+++.+.+......+ ++.+++++++++|++|.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 11111111111223345789999999999999999999999999999998887776 7889999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhc
Q 007672 281 RVIEEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMG 359 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (594)
+...+.++..|+++++.+. ++..+++.|+++++|+++++|++++.|.+....
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 271 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------- 271 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence 9888889999999999877 999999999999999999999999998653110
Q ss_pred cCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCC-ccccCcc
Q 007672 360 YKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDE-MCMVGTA 438 (594)
Q Consensus 360 ~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~-~~~~~~~ 438 (594)
...+||.+++||+++++++.+.+.+ +++++++.||+||+++.+....+.. .....++
T Consensus 272 ---------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 329 (501)
T 3ipl_A 272 ---------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329 (501)
T ss_dssp ---------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred ---------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence 0017999999999999999999987 4999999999999987655543322 2344789
Q ss_pred ccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCce
Q 007672 439 GPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNL 518 (594)
Q Consensus 439 G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~ 518 (594)
|.|+++++++|+| ++ .++.|||+|+|+.++.||+++++.+.. |.+|||+|||+|++|+||+|++.||.||+
T Consensus 330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ 400 (501)
T 3ipl_A 330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDL 400 (501)
T ss_dssp BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCC
T ss_pred CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccce
Confidence 9999999999999 43 235799999999999999999999887 88999999999999999999999999999
Q ss_pred eEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccceeee--------Ee------eeecCcee
Q 007672 519 IKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGILEW--------SC------WFIPGTLF 578 (594)
Q Consensus 519 i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~~~--------~~------~~~p~~i~ 578 (594)
||+ +|++|+|.+||++|.+||+|.+|+|++.+++ +++++.....+..++ +. +...+.||
T Consensus 401 ik~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP 479 (501)
T 3ipl_A 401 IIS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSKHLAKYKVPKHFEKVDTLP 479 (501)
T ss_dssp EEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC
T ss_pred EEE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHhhCccccCCCEEEEecccC
Confidence 995 8999999999999999999999999998775 344444333332222 33 44455789
Q ss_pred eeccccccccccccC
Q 007672 579 TCSATKLYPLRAEEC 593 (594)
Q Consensus 579 ~~~~gk~~r~~~~~~ 593 (594)
+|++||++|+++|+.
T Consensus 480 ~t~~GKi~R~~l~~~ 494 (501)
T 3ipl_A 480 YTSTGKLQRNKLYRE 494 (501)
T ss_dssp ---------------
T ss_pred CCCCCCEeHHHHhhc
Confidence 999999999999985
No 23
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=4e-69 Score=579.50 Aligned_cols=460 Identities=17% Similarity=0.178 Sum_probs=373.9
Q ss_pred CcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHH
Q 007672 42 NTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEAC 121 (594)
Q Consensus 42 ~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~ 121 (594)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|+++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 57999999999999999999875 4 58999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeHH
Q 007672 122 NALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSWD 201 (594)
Q Consensus 122 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (594)
+++|++++|+++.++.+++.+++++++++++|++....... ... .++..+ .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999985432110 000 111110 111
Q ss_pred HHHhcc-cccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 202 EFLHLG-KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 202 ~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
.+.... ...........++++++++|||||||.||+|++||+++.+.+......+ ++.++|++++.+|++|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 111111 1112223345789999999999999999999999999999998877776 7899999999999999999
Q ss_pred HHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
+...+.++..|+++++.+. ++..+++.|+++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 89999999999999999999999988753210
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC----
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---- 431 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~---- 431 (594)
....++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 255 ------------~~~~~~--------~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSESML--------PNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CSTTTS--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccchhC--------ccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 111122 3899999999999999999999988 899999999999998776544332
Q ss_pred ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhccc----CCccccCceEEEcCCC
Q 007672 432 MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESII----DGWFHTGDIGQILPNG 507 (594)
Q Consensus 432 ~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~----~g~~~TGDlg~~~~dG 507 (594)
.....++|.|.++++++|+| +++..+ +.|+.|||+|+||+++.||+++++.+++.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTIA--PDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCBC--CTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCCCC--CCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12336899999999999999 666544 4568999999999999999999999999982 459999999999 799
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccc---------e-----ee
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVG---------I-----LE 567 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~---------~-----~~ 567 (594)
+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|+++++. +++++...... + ..
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~ 469 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNER 469 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTT
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhhHHHHHHHHHhh
Confidence 99999999999997 8999999999999999999999999987653 33443322110 1 11
Q ss_pred eEe------eeecCceeeecccccccccccc
Q 007672 568 WSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 568 ~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
++. +...+.||+|++||++|+++++
T Consensus 470 L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~ 500 (512)
T 3fce_A 470 LPNYMIPRKFMYQSSIPMTPNGKVDRKKLLS 500 (512)
T ss_dssp SCGGGSCSEEEECSCCCBCTTSSBCHHHHHH
T ss_pred CchhcCCeEEEEecccCCCCCcChHHHHHHh
Confidence 233 4555679999999999999875
No 24
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.2e-68 Score=614.08 Aligned_cols=508 Identities=23% Similarity=0.296 Sum_probs=343.7
Q ss_pred CCCCCCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH
Q 007672 16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA 95 (594)
Q Consensus 16 ~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~ 95 (594)
.+.+....+|++......+ +...++.++|.++++++||++|+++. +. + +++||+||.++++++|+.|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~--~--~~~TY~eL~~~~~~lA~~L~~ 107 (979)
T 3tsy_A 39 SNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PT--G--HVYTYSDVHVISRQIAANFHK 107 (979)
T ss_dssp ------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TT--C--CEEEHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CC--C--cEEEHHHHHHHHHHHHHHHHH
Confidence 3344556677766543333 34589999999999999999999864 32 2 689999999999999999999
Q ss_pred cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccE
Q 007672 96 SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRV 175 (594)
Q Consensus 96 ~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 175 (594)
+|+++||+|+|+++|+++++++++||+++|++++|++|.++++++.+++++++++++|++......+...... ....
T Consensus 108 ~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---~~~~ 184 (979)
T 3tsy_A 108 LGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---DGVV 184 (979)
T ss_dssp TTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---SCCE
T ss_pred cCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---CCce
Confidence 9999999999999999999999999999999999999999999999999999999999998765544322211 1123
Q ss_pred EEEecCCcHHHHHHHhhCCcceeeHHHHHhcccc--cccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhh
Q 007672 176 MVCFTSLTAEQKEMAVQTGIKPYSWDEFLHLGKV--NEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVD 253 (594)
Q Consensus 176 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~ 253 (594)
++.+++... .........|.++...... .........++++++++|||||||.||+|+++|+++++.+....
T Consensus 185 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~ 258 (979)
T 3tsy_A 185 IVCIDDNES------VPIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQV 258 (979)
T ss_dssp EEECCCCTT------SCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHH
T ss_pred EEEeCCccc------ccCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHH
Confidence 444443211 0111234455555543322 12233346789999999999999999999999999998876654
Q ss_pred hhhccccCCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHH
Q 007672 254 LFLDQFEDKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIK 331 (594)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~ 331 (594)
.... ....+.+++++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..|.+...
T Consensus 259 ~~~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~ 337 (979)
T 3tsy_A 259 DGEN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337 (979)
T ss_dssp CSSS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG
T ss_pred Hhhc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc
Confidence 3211 0125778999999999999999865 6778999999999876 99999999999999999999999998865211
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCc
Q 007672 332 KALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAF 410 (594)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~ 410 (594)
....+++ +||.+++||+++++++.+++.+.+ ++.
T Consensus 338 -------------------------------------~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~~~ 372 (979)
T 3tsy_A 338 -------------------------------------TEKYDLS--------SIRVVKSGAAPLGKELEDAVNAKFPNAK 372 (979)
T ss_dssp -------------------------------------GGTSCCT--------TCCEEEESSCCCCSSHHHHHHHHCTTCE
T ss_pred -------------------------------------ccCCCcc--------ceEEEEEcCCCCCHHHHHHHHHHCCCCe
Confidence 1122233 899999999999999999999888 899
Q ss_pred eEeeecccCCCCceeccC----CCCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhh
Q 007672 411 LVQGYGLTETCGPTTVCF----PDEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLT 486 (594)
Q Consensus 411 i~~~yG~tE~~~~~~~~~----~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~ 486 (594)
+++.||+||++.+++... .......+++|.|+++++++|+|.+++ .+++.|+.|||+|+|++++.||+++|+.+
T Consensus 373 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~--~~~~~g~~GEl~i~g~~v~~GY~~~p~~t 450 (979)
T 3tsy_A 373 LGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG--DSLSRNQPGEICIRGHQIMKGYLNNPAAT 450 (979)
T ss_dssp EEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSC--CBCCTTCCEEEEEESTTSCSEETTCHHHH
T ss_pred EEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCC--CCCCCCCccEEEEECCCccccccCChhhh
Confidence 999999999998765542 112233478999999999999993334 34556699999999999999999999999
Q ss_pred hhcc-cCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc
Q 007672 487 RESI-IDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR 559 (594)
Q Consensus 487 ~~~~-~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~ 559 (594)
++.| .+|||+|||+|++|+||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++++++ +++++.
T Consensus 451 ~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~ 529 (979)
T 3tsy_A 451 AETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVK 529 (979)
T ss_dssp HHHBCTTSCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------
T ss_pred hhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEE
Confidence 9999 8999999999999999999999999999997 7999999999999999999999999998774 444443
Q ss_pred c--cccceee--------eEeeeec------Cceeeecccccccccccc
Q 007672 560 H--QKVGILE--------WSCWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 560 ~--~~~~~~~--------~~~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
. ...+..+ ++.|++| +.||+|++||++|+++|+
T Consensus 530 ~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~ 578 (979)
T 3tsy_A 530 SKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRA 578 (979)
T ss_dssp -------------------------------------------------
T ss_pred CCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHH
Confidence 2 1222222 2445555 678999999999999986
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.8e-68 Score=574.45 Aligned_cols=461 Identities=16% Similarity=0.136 Sum_probs=368.2
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
+.++.++|+++++++||++|+.+. + +++||+||.++++++|++|++.|+++||+|+|+++|+++++++++|
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999875 3 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|+++.++.+++.+++++++++++|++.+....+ ... . ...+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~-~---------------------~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI-S---------------------LVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS-E---------------------EEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC-c---------------------ccch
Confidence 999999999999999999999999999999999987643221 011 1 1122
Q ss_pred HHHHhcc--cccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHH
Q 007672 201 DEFLHLG--KVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHI 278 (594)
Q Consensus 201 ~~~~~~~--~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~ 278 (594)
.++.... ...........++++++++|||||||.||+|++||+++++.+....... ...+...+++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 2221111 0111223345789999999999999999999999999998877655431 1267889999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 279 LDRVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 279 ~~~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
.++..++.++..|+++++.+. ++..+++.|.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888778888999999998764 88999999999999999999999988753110
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC--
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE-- 431 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~-- 431 (594)
....++ +++|.+++||+++++++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 258 --------------~~~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FCQAKM--------PALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CSTTTC--------TTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------cccccC--------ccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 011112 2899999999999999999998888 899999999999998766543221
Q ss_pred --ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc----cCCccccCceEEEcC
Q 007672 432 --MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI----IDGWFHTGDIGQILP 505 (594)
Q Consensus 432 --~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~----~~g~~~TGDlg~~~~ 505 (594)
.....++|+|+++++++|+| +++..+ +.|+.|||+|+||+++.||+++++.+++.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGKEL--SSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSCBC--CTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcCCC--CCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 11236899999999999999 666544 456899999999999999999999999988 356999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc-------hhhcccccccc------------e-
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS-------CAMRRRHQKVG------------I- 565 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~-------~~~~~~~~~~~------------~- 565 (594)
||+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.++. +++++...... +
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~ 471 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIK 471 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHH
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHH
Confidence 9999999999999997 7999999999999999999999999987642 33433322111 0
Q ss_pred ----eeeEe------eeecCceeeecccccccccccc
Q 007672 566 ----LEWSC------WFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 566 ----~~~~~------~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
..++. +...+.||+|++||++|++|++
T Consensus 472 ~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~ 508 (521)
T 3l8c_A 472 ASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLIN 508 (521)
T ss_dssp HHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHH
T ss_pred HHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhh
Confidence 11233 4445679999999999999876
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.2e-68 Score=571.74 Aligned_cols=458 Identities=24% Similarity=0.275 Sum_probs=354.4
Q ss_pred CCCcCcHHHHHHHHHHcCCC-CcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHH
Q 007672 38 DSDLNTAWDIFSMSVQKYPG-NRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVE 116 (594)
Q Consensus 38 ~~~~~tl~~~l~~~a~~~pd-~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~ 116 (594)
...++++.+.|.++++++|+ ++|+++. + +++||+||.++++++|+.|. .|++|+|+++|++++++
T Consensus 18 ~~~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~ 83 (505)
T 3nyq_A 18 GSHMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGV 83 (505)
T ss_dssp ------CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHH
T ss_pred CcccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHH
Confidence 34578999999999999887 9999875 3 68999999999999998774 48899999999999999
Q ss_pred HHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcc
Q 007672 117 AMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIK 196 (594)
Q Consensus 117 ~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 196 (594)
+++||+++|++++|++|.++.+++.+++++++++++|++..... .........+ ..+...
T Consensus 84 ~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~~------------- 143 (505)
T 3nyq_A 84 AVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVRA------------- 143 (505)
T ss_dssp HHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTTC-------------
T ss_pred HHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-cccccc-------------
Confidence 99999999999999999999999999999999999999865211 0011111111 111100
Q ss_pred eeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChh
Q 007672 197 PYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLA 276 (594)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 276 (594)
..........++++++++|||||||.||+|+++|+++.+.+......+ ++..+|++++.+|++
T Consensus 144 ------------~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 206 (505)
T 3nyq_A 144 ------------RGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLF 206 (505)
T ss_dssp ------------CCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTT
T ss_pred ------------ccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHH
Confidence 111122345688999999999999999999999999999999888777 788999999999999
Q ss_pred HHHHHHH-HHHhhhcCcEEEEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 007672 277 HILDRVI-EEYFFRRGASVGYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLA 354 (594)
Q Consensus 277 ~~~~~~~-~l~~l~~G~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (594)
|..++.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..|++.......
T Consensus 207 ~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~------------------- 266 (505)
T 3nyq_A 207 HVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPE------------------- 266 (505)
T ss_dssp SHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHH-------------------
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCch-------------------
Confidence 9999875 7788999999998876 899999999 88999999999999998764221110
Q ss_pred HHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccc
Q 007672 355 WMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCM 434 (594)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~ 434 (594)
...+++ ++|.+++||+++++++.+++.+.+++.+++.||+||++..++...... ..
T Consensus 267 ---------------~~~~l~--------~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~ 322 (505)
T 3nyq_A 267 ---------------LAKALA--------GARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PR 322 (505)
T ss_dssp ---------------HHHHHH--------HCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CC
T ss_pred ---------------hhcccc--------cceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CC
Confidence 111233 799999999999999999999988999999999999987766654433 33
Q ss_pred cCccccCccCceEEeeecCCCCCCCC-CCCCCceEEEccCCcccccCCCchhhhhcc-cCCccccCceEEEcCCCcEEEE
Q 007672 435 VGTAGPVSVYSELRLEEVPEMGYSPL-DDPPCGEVCVRGKTLFSGYYKNPDLTRESI-IDGWFHTGDIGQILPNGVVKII 512 (594)
Q Consensus 435 ~~~~G~~~~~~~~~i~d~~~~~~~~~-~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~~g~~~TGDlg~~~~dG~l~~~ 512 (594)
.+++|+|+++++++|+| +++..++. +.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++|+||+|++.
T Consensus 323 ~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~ 401 (505)
T 3nyq_A 323 AGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIV 401 (505)
T ss_dssp TTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEE
T ss_pred CCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEe
Confidence 48999999999999999 66666554 446899999999999999999999999999 7999999999999999999999
Q ss_pred ecc-CceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccc---ccceee--------eEee---
Q 007672 513 DRK-KNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ---KVGILE--------WSCW--- 571 (594)
Q Consensus 513 GR~-~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~---~~~~~~--------~~~~--- 571 (594)
||. ||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +++++... .....+ ++.|
T Consensus 402 GR~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P 480 (505)
T 3nyq_A 402 GRKATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRP 480 (505)
T ss_dssp EESSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSC
T ss_pred CCccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCc
Confidence 998 589996 8999999999999999999999999998774 44444332 111112 2334
Q ss_pred ---eecCceeeecccccccccccc
Q 007672 572 ---FIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 572 ---~~p~~i~~~~~gk~~r~~~~~ 592 (594)
...+.||+|++||++|+++++
T Consensus 481 ~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 481 RVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp SEEEECSCCCC-------------
T ss_pred cEEEEECCCCCCCCcCeeHHhhcc
Confidence 444568999999999999985
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.1e-66 Score=567.41 Aligned_cols=482 Identities=18% Similarity=0.230 Sum_probs=378.0
Q ss_pred ccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 007672 29 LASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYG 108 (594)
Q Consensus 29 ~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~ 108 (594)
...+.+|.......++.++|+++++++|+.+++.. ..+..+++||+||.++++++|+.|+++|+++||+|+|++
T Consensus 8 ~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (576)
T 3gqw_A 8 IFTHSLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIA 81 (576)
T ss_dssp ------CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEEC
T ss_pred hhcCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 34467777778899999999999999999877742 223337899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCCEEeecCCCCC-------hhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecC
Q 007672 109 ANCPQWVEAMEACNALSLICVPLYDTLG-------PGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (594)
Q Consensus 109 ~n~~~~~~~~~A~~~~G~~~v~i~~~~~-------~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (594)
+|+++++++++||+++|++++|+++.++ .+++.+++++++++++|++.+....+..... ...... ++
T Consensus 82 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~-~~---- 155 (576)
T 3gqw_A 82 ETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATH-DNPELH-VL---- 155 (576)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGG-GCTTCE-EE----
T ss_pred CCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhc-cCCcce-ec----
Confidence 9999999999999999999999999998 7899999999999999999886655433221 111111 11
Q ss_pred CcHHHHHHHhhCCcceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhh-hcccc
Q 007672 182 LTAEQKEMAVQTGIKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLF-LDQFE 260 (594)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~-~~~~~ 260 (594)
.... ...............++++++++|||||||.||+|+++|+++++.+..+... +
T Consensus 156 -----------------~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~---- 213 (576)
T 3gqw_A 156 -----------------SHAW-FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI---- 213 (576)
T ss_dssp -----------------EHHH-HHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS----
T ss_pred -----------------chhh-hhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc----
Confidence 1111 1111112222334568999999999999999999999999999888776543 3
Q ss_pred CCCCCCcEEEEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHH
Q 007672 261 DKMTVDDVYLSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKAL 334 (594)
Q Consensus 261 ~~~~~~~~~~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~ 334 (594)
++.++|++++++|++|.+++.. .+.++..|+++++... ++..+++.|+++++|+++++|.+++.+.+.....
T Consensus 214 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~- 291 (576)
T 3gqw_A 214 -KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK- 291 (576)
T ss_dssp -CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH-
T ss_pred -CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc-
Confidence 7889999999999999999875 5667889999888763 7899999999999999999999998876432211
Q ss_pred HhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc------C
Q 007672 335 EELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------C 408 (594)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~------~ 408 (594)
.....+++ ++|.+++||+++++++.+.+.+.+ +
T Consensus 292 ---------------------------------~~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 330 (576)
T 3gqw_A 292 ---------------------------------DLAELDLS--------CWRVAGIGAEPISAEQLHQFAECFRQVNFDN 330 (576)
T ss_dssp ---------------------------------HHTTCCCT--------TCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred ---------------------------------ccccCChh--------hhHhhhccCccCCHHHHHHHHHHHhhcCCCc
Confidence 11112233 899999999999999999998887 6
Q ss_pred CceEeeecccCCCCceeccCCCCc---------------------------cccCccccCccCceEEeeecCCCCCCCCC
Q 007672 409 AFLVQGYGLTETCGPTTVCFPDEM---------------------------CMVGTAGPVSVYSELRLEEVPEMGYSPLD 461 (594)
Q Consensus 409 ~~i~~~yG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~~~~~~~~~i~d~~~~~~~~~~ 461 (594)
+.+++.||+||++.+++....... ....++|+|+++++++|+| +++..+ +
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~--~ 407 (576)
T 3gqw_A 331 KTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPV--A 407 (576)
T ss_dssp GGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBC--C
T ss_pred ccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCC--C
Confidence 889999999999988776532210 0113789999999999999 666544 4
Q ss_pred CCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHHhcCCC
Q 007672 462 DPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPI 541 (594)
Q Consensus 462 ~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~ 541 (594)
.|+.|||+|+|++++.||+++++.+.+.+.+|||+|||+|++ +||+|+++||.||+||+ +|++|+|.|||++|.+||+
T Consensus 408 ~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~ 485 (576)
T 3gqw_A 408 ERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPE 485 (576)
T ss_dssp TTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSS
T ss_pred CCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcc
Confidence 568999999999999999999998888779999999999999 79999999999999997 8999999999999999999
Q ss_pred ccceEEeecCCch----hh--cccccccc-----------------eeeeEeeeecCceeeecccccccccccc
Q 007672 542 IEDPQVNVSCSSC----AM--RRRHQKVG-----------------ILEWSCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 542 V~~~~V~g~~~~~----~~--~~~~~~~~-----------------~~~~~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
|.+|+|++..++. ++ ........ .-....++.++.||+|++||++|+++++
T Consensus 486 V~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~ 559 (576)
T 3gqw_A 486 IHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKK 559 (576)
T ss_dssp CCTTSEEEEECTTSCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHH
T ss_pred cccccEEEEEcCCccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHH
Confidence 9998888765431 11 11111000 0011123333589999999999999875
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.1e-67 Score=572.45 Aligned_cols=476 Identities=17% Similarity=0.203 Sum_probs=377.2
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAM 118 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~ 118 (594)
....++.++|+++|+++||++|+++. ++ +..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 35689999999999999999999986 42 22379999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeecCCCC---ChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCc
Q 007672 119 EACNALSLICVPLYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 119 ~A~~~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
+||+++|++++|++|.. +.+++.++++.+++++++++.+....+........+....+....
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 147 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIA--------------- 147 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEE---------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceee---------------
Confidence 99999999999999987 457899999999999999998877665432211111111111111
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL 275 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl 275 (594)
++.+.... ..........++++++++|||||||.||+|++||+++++.+......+ ++.++|++++++|+
T Consensus 148 ----~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 148 ----LESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp ----GGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred ----chhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11111000 111223445789999999999999999999999999999999887776 78999999999999
Q ss_pred hHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 007672 276 AHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (594)
Q Consensus 276 ~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (594)
+|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~----------------- 280 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIRE----------------- 280 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCG-----------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhh-----------------
Confidence 99999986 7788999999999764 789999999999999999999999988653211
Q ss_pred HHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc------CCceEeeecccCCCCc
Q 007672 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC------CAFLVQGYGLTETCGP 423 (594)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~------~~~i~~~yG~tE~~~~ 423 (594)
......+++ +||.+++||+++++++.+.+.+.+ ++.+++.||+||++++
T Consensus 281 -----------------~~~~~~~l~--------~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 281 -----------------EKKEGLDLS--------SWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp -----------------GGGTTCCCT--------TCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred -----------------hhccCCCch--------hhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 111112233 899999999999999999998887 3479999999999998
Q ss_pred eeccCCC--------------------------CccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCccc
Q 007672 424 TTVCFPD--------------------------EMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFS 477 (594)
Q Consensus 424 ~~~~~~~--------------------------~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~ 477 (594)
++...+. ......++|.|+++ ++|+| +++ ..+++.|+.|||+|+||+++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~~ 411 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVAK 411 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSCC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCcccc
Confidence 7754321 11233688999998 88888 442 345556799999999999999
Q ss_pred ccCCCchhhhhcccC-------C--ccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHH-hcCCCcc--ce
Q 007672 478 GYYKNPDLTRESIID-------G--WFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-CVAPIIE--DP 545 (594)
Q Consensus 478 gY~~~~~~~~~~~~~-------g--~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-~~~p~V~--~~ 545 (594)
||+++++.+++.|.+ | ||+|||+|++| ||+|++.||.||+||+ +|++|+|.|||++| ..+|.|. +|
T Consensus 412 GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~~ 489 (590)
T 3kxw_A 412 GYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGKC 489 (590)
T ss_dssp CBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEEE
T ss_pred cccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCccE
Confidence 999999999999843 5 99999999999 9999999999999997 89999999999999 8899998 89
Q ss_pred EEeecCCc-----hhhccccc----ccceeee------------------EeeeecCceeeecccccccccccc
Q 007672 546 QVNVSCSS-----CAMRRRHQ----KVGILEW------------------SCWFIPGTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 546 ~V~g~~~~-----~~~~~~~~----~~~~~~~------------------~~~~~p~~i~~~~~gk~~r~~~~~ 592 (594)
+|++++++ +++++... ..+..++ ..++..+.||+|++||++|+++|+
T Consensus 490 ~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~ 563 (590)
T 3kxw_A 490 AAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRK 563 (590)
T ss_dssp EEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHH
T ss_pred EEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHH
Confidence 99987764 22222211 1111111 123334789999999999999875
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=3.8e-66 Score=562.83 Aligned_cols=476 Identities=16% Similarity=0.129 Sum_probs=317.5
Q ss_pred CCcCcHHHHHHHHHHcCCCCcceEeecccCC----CCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 007672 39 SDLNTAWDIFSMSVQKYPGNRMLGWRPFVDG----KFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (594)
Q Consensus 39 ~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~----~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~ 114 (594)
....++.++|+++|+++||++|+++. ++ ..+..+++||+||.++++++|+.|++.|+ +||+|+|+++|++++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~ 92 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA 92 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH
Confidence 45688999999999999999999976 32 22334789999999999999999999999 799999999999999
Q ss_pred HHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCC
Q 007672 115 VEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTG 194 (594)
Q Consensus 115 ~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 194 (594)
+++++||+++|++++|+++.++.+++.+++++++++++|+++....... ......++.....
T Consensus 93 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~------------ 154 (562)
T 3ite_A 93 FAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKNQ------------ 154 (562)
T ss_dssp HHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTCH------------
T ss_pred HHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccch------------
Confidence 9999999999999999999999999999999999999999876543321 0111122221111
Q ss_pred cceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhc---cccCCCCCCcEEEE
Q 007672 195 IKPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLD---QFEDKMTVDDVYLS 271 (594)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~ 271 (594)
.+.+..... ..........++++++++|||||||.||+|+++|+++.+.+..+...+. .....+...+++++
T Consensus 155 ----~~~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (562)
T 3ite_A 155 ----SFIENLSTQ-DTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLC 229 (562)
T ss_dssp ----HHHHHHHHS-CCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEEC
T ss_pred ----hhhhhcccc-cccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEE
Confidence 122222221 1111223446788999999999999999999999999988776554321 01124678899999
Q ss_pred ecChhHHHHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 007672 272 FLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALY 349 (594)
Q Consensus 272 ~~pl~~~~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (594)
..|+.|..++...+.++..|+++++.+. .+..+++.++++++|+++++|++++.+...
T Consensus 230 ~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~-------------------- 289 (562)
T 3ite_A 230 LASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV-------------------- 289 (562)
T ss_dssp CSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC--------------------
T ss_pred ecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC--------------------
Confidence 9999998888778889999999988765 467889999999999999999987765210
Q ss_pred HHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCC
Q 007672 350 KYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFP 429 (594)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~ 429 (594)
..++ ++||.+++||+++++++.+.+.+.+++.+++.||+||++..++....
T Consensus 290 ---------------------~~~~--------~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~ 340 (562)
T 3ite_A 290 ---------------------PEDA--------PHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRI 340 (562)
T ss_dssp ---------------------GGGS--------TTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEEC
T ss_pred ---------------------cccc--------CceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeee
Confidence 0012 28999999999999999999998889999999999999987776554
Q ss_pred CCccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCC--ccccCceEEEcCCC
Q 007672 430 DEMCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDG--WFHTGDIGQILPNG 507 (594)
Q Consensus 430 ~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g--~~~TGDlg~~~~dG 507 (594)
.......++|+|+++++++|+| ++++ .+++.|+.|||+|+|++++.|||++++.+...+.+| ||+|||+|++|+||
T Consensus 341 ~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG 418 (562)
T 3ite_A 341 LPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADS 418 (562)
T ss_dssp CTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTS
T ss_pred cCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCC
Confidence 4444447899999999999999 4332 345566999999999999999999999988777777 99999999999999
Q ss_pred cEEEEeccCceeEcCCceeechHHHHHHHhcC-CCccceEEeecCCc------h-hhccc-cccc---------------
Q 007672 508 VVKIIDRKKNLIKISQGEYVALEYLENVYCVA-PIIEDPQVNVSCSS------C-AMRRR-HQKV--------------- 563 (594)
Q Consensus 508 ~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~-p~V~~~~V~g~~~~------~-~~~~~-~~~~--------------- 563 (594)
+|++.||.||+||+ +|++|+|.|||++|.+| |.+.+++|++.+++ + +++.. ....
T Consensus 419 ~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 497 (562)
T 3ite_A 419 SILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEIN 497 (562)
T ss_dssp CEEEEEEC------------------------------------------------------------------------
T ss_pred eEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHH
Confidence 99999999999996 89999999999999998 88889999887764 1 12211 1111
Q ss_pred -cee-----eeEeeeecC------ceeee-ccccccccccccC
Q 007672 564 -GIL-----EWSCWFIPG------TLFTC-SATKLYPLRAEEC 593 (594)
Q Consensus 564 -~~~-----~~~~~~~p~------~i~~~-~~gk~~r~~~~~~ 593 (594)
.+. .++.|++|+ .||+| ++||++|+++++.
T Consensus 498 ~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~ 540 (562)
T 3ite_A 498 NSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHM 540 (562)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHH
Confidence 111 234466655 58888 8999999999863
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=2.9e-64 Score=595.33 Aligned_cols=460 Identities=19% Similarity=0.230 Sum_probs=378.5
Q ss_pred cCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHH
Q 007672 41 LNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEA 120 (594)
Q Consensus 41 ~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A 120 (594)
..++.++|.++++++||++|+++. + +++||+||.++++++|+.|++.|+++|++|+|+++|+++++++++|
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999875 4 4899999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCCcHHHHHHHhhCCcceeeH
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSLTAEQKEMAVQTGIKPYSW 200 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 200 (594)
|+++|++++|++|.++.+++.++++++++++++++......... .+.....+.+++... +
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------------~ 593 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----LPYTGTTLFIDDQTR---------------F 593 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----CCCCSEEEESSCGGG---------------G
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----cCCCCcEEEeccccc---------------c
Confidence 99999999999999999999999999999999998765433211 111223333332110 0
Q ss_pred HHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHH
Q 007672 201 DEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILD 280 (594)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~ 280 (594)
.. ..........++++|+++|||||||.||||+++|+++.+.. .....+ ++.+++++++..|+.|..+
T Consensus 594 ----~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 594 ----EE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-KHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp ----GS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-SSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred ----cc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-HHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 00 11112234568999999999999999999999999998763 333333 6789999999999999888
Q ss_pred HHHHHHhhhcCcEEEEecC----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 007672 281 RVIEEYFFRRGASVGYYHG----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWM 356 (594)
Q Consensus 281 ~~~~l~~l~~G~~~~~~~~----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (594)
...++.++..|+++++.+. ++..+++.|+++++|+++++|++++.+.+....
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 8778889999999999864 899999999999999999999999988642100
Q ss_pred hhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhc-CCceEeeecccCCCCceeccCCCC---c
Q 007672 357 NMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTC-CAFLVQGYGLTETCGPTTVCFPDE---M 432 (594)
Q Consensus 357 ~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~-~~~i~~~yG~tE~~~~~~~~~~~~---~ 432 (594)
.++ +||.+++||+++++++.+.+.+.+ ++.++|.||+||++.+++...... .
T Consensus 718 ----------------~~~--------~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WMK--------GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HHH--------TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cCC--------CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 011 899999999999999999888776 478999999999998776543321 2
Q ss_pred cccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcc-c------CCccccCceEEEcC
Q 007672 433 CMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESI-I------DGWFHTGDIGQILP 505 (594)
Q Consensus 433 ~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~-~------~g~~~TGDlg~~~~ 505 (594)
....++|+|++|++++|+| +++..+ +.|+.|||+|+|+++++||+++|+.|+++| . ++||+|||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~~~--p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQLQ--PFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBC--CTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcCCC--CCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2236899999999999999 666544 455999999999999999999999999999 3 24999999999999
Q ss_pred CCcEEEEeccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccccccccee--------eeEee
Q 007672 506 NGVVKIIDRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGIL--------EWSCW 571 (594)
Q Consensus 506 dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~~--------~~~~~ 571 (594)
||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.++. +++++.....+.. .++.|
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~~~~~l~~~l~~~Lp~y 929 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQLSAEDVKAHLKKQLPAY 929 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSSCHHHHHHHHHHHSCGG
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCCCHHHHHHHHHHhChHh
Confidence 9999999999999998 7999999999999999999999999987653 4455443333322 23556
Q ss_pred eecC------ceeeeccccccccccccC
Q 007672 572 FIPG------TLFTCSATKLYPLRAEEC 593 (594)
Q Consensus 572 ~~p~------~i~~~~~gk~~r~~~~~~ 593 (594)
++|. .||+|++||+.|+.++++
T Consensus 930 mvP~~~~~l~~lP~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 930 MVPQTFTFLDELPLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp GSCSEEEEESCCCCCSSCSSCCSCCCCC
T ss_pred hhccEEEEecccCCCCCcccCHhhcCCc
Confidence 6664 689999999999999764
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=9.8e-58 Score=487.49 Aligned_cols=401 Identities=16% Similarity=0.196 Sum_probs=312.6
Q ss_pred CcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHH
Q 007672 40 DLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAME 119 (594)
Q Consensus 40 ~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~ 119 (594)
..+++.++|+++++++||++|+++....++..|.++++||+||.++++++|+.|+++|+ +||+|+|+++|+++++++++
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 46889999999999999999999871111345556899999999999999999999996 99999999999999999999
Q ss_pred HHHhcCCEEeecCC---CCChhHHHHHHhhcCceEEEEcchhHHHHhccccccc-ccccEEEEecCCcHHHHHHHhhCCc
Q 007672 120 ACNALSLICVPLYD---TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSA-QRLRVMVCFTSLTAEQKEMAVQTGI 195 (594)
Q Consensus 120 A~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~ 195 (594)
||+++|++++|+++ ..+.+++.+++++++++++|++......+........ .....++..+...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 7789999999999999999999887665543322110 0111222222111
Q ss_pred ceeeHHHHHhcccccccccCCCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCC------CcEE
Q 007672 196 KPYSWDEFLHLGKVNEMEILPPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTV------DDVY 269 (594)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~------~~~~ 269 (594)
. ............++++++++|||||||.||+|++||+++++.+......+ .+.. ++++
T Consensus 169 ---------~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ---------L-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ---------T-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ---------c-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 0 00111223345688999999999999999999999999999988877766 4555 8999
Q ss_pred EEecChhHHHHHHH-HHHhhhcCcEEEEecC-----ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHH
Q 007672 270 LSFLPLAHILDRVI-EEYFFRRGASVGYYHG-----DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRR 343 (594)
Q Consensus 270 ~~~~pl~~~~~~~~-~l~~l~~G~~~~~~~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~ 343 (594)
++++|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++| +..+|+++..++.....
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~----------- 301 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTT----------- 301 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCC-----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcC-----------
Confidence 99999999999865 6788999999999763 899999999999999 88899888877642110
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcC------CceEeeecc
Q 007672 344 IFDALYKYKLAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCC------AFLVQGYGL 417 (594)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~------~~i~~~yG~ 417 (594)
.......+++ +||.+++||+++++++.+.+.+.++ +.+++.||+
T Consensus 302 ----------------------~~~~~~~~l~--------~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 302 ----------------------DDDMAGRDLG--------NILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp ----------------------TGGGTTCCCT--------TCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred ----------------------cccccccchh--------hhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 0111122233 8999999999999999999998873 479999999
Q ss_pred cCCCCceeccCCCC------------------------ccccCccccCccCceEEeeecCCCCCCCCCCCCCceEEEccC
Q 007672 418 TETCGPTTVCFPDE------------------------MCMVGTAGPVSVYSELRLEEVPEMGYSPLDDPPCGEVCVRGK 473 (594)
Q Consensus 418 tE~~~~~~~~~~~~------------------------~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~ 473 (594)
||++.+++...... .....++|+|++ ++++|+| +++ ..+++.|+.|||+|+|+
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~~g~~GEl~v~g~ 428 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECPDGTVGEIWVHGD 428 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECCTTBCEEEEEEST
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCCCCCEEEEEEeCC
Confidence 99999877655432 123368999999 9999999 442 23445569999999999
Q ss_pred CcccccCCCchhhhhcc------------cCCccccCceEEEcCCCcEEEEec
Q 007672 474 TLFSGYYKNPDLTRESI------------IDGWFHTGDIGQILPNGVVKIIDR 514 (594)
Q Consensus 474 ~v~~gY~~~~~~~~~~~------------~~g~~~TGDlg~~~~dG~l~~~GR 514 (594)
+++.||+++++.+++.| .+|||+|||+|++| ||+|+++||
T Consensus 429 ~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 429 NVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred ccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 99999999999999998 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=4.3e-46 Score=380.18 Aligned_cols=290 Identities=17% Similarity=0.096 Sum_probs=235.0
Q ss_pred CCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEec
Q 007672 219 PFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYH 298 (594)
Q Consensus 219 ~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~ 298 (594)
.+++++|+|||||||.||+|++||+++.+.+......+ ++.++|++++++|++|.+|+..++.++..|+++++..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999998888777 8899999999999999999988888999999998876
Q ss_pred CChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHhhHHHH
Q 007672 299 GDLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLAFRKVK 378 (594)
Q Consensus 299 ~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 378 (594)
. ....++.|+++++|+++++|+++..|++... ...+++
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~--------------------------------------~~~~l~--- 148 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSA--------------------------------------TSGQVD--- 148 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTT--------------------------------------TGGGGG---
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhcccc--------------------------------------ccccCC---
Confidence 4 2334678999999999999999998865211 111233
Q ss_pred HHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCceeccCCCCccccCccccCccCceEEeeecCCCCCC
Q 007672 379 ARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGPTTVCFPDEMCMVGTAGPVSVYSELRLEEVPEMGYS 458 (594)
Q Consensus 379 ~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~ 458 (594)
+||.+++||+++++++.+++.+ +++++++.||+||+++.+.......... +++|.+.|++++.+.+
T Consensus 149 -----~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 149 -----RLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp -----GGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred -----cceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 8999999999999999999987 4999999999999998877766554443 7899999999888755
Q ss_pred CCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCCcEEEEeccCceeEcCCceeechHHHHHHH--
Q 007672 459 PLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNGVVKIIDRKKNLIKISQGEYVALEYLENVY-- 536 (594)
Q Consensus 459 ~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG~l~~~GR~~d~i~~~~G~~v~~~~iE~~l-- 536 (594)
.|||+++|+.. .+|||+|||+|++|+|| ++++||.||+||+ +|++|+|.|||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 59999998632 37899999999999888 6677999999996 89999999999887
Q ss_pred -hcCCCccceEEe-ecCCc------hhhccccc-cccee--------eeEeeeec------Cceeeecccccccccccc
Q 007672 537 -CVAPIIEDPQVN-VSCSS------CAMRRRHQ-KVGIL--------EWSCWFIP------GTLFTCSATKLYPLRAEE 592 (594)
Q Consensus 537 -~~~p~V~~~~V~-g~~~~------~~~~~~~~-~~~~~--------~~~~~~~p------~~i~~~~~gk~~r~~~~~ 592 (594)
.+||.|.+|+|+ +.+|+ +++++... ....+ .++.|++| +.||+|++||++|+.+++
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~ 350 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQ 350 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHH
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHH
Confidence 468999999887 55553 33433321 11111 12334444 568999999999998865
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.6e-42 Score=362.14 Aligned_cols=308 Identities=15% Similarity=0.131 Sum_probs=233.7
Q ss_pred CCC-CCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHH-HHHHhhhcCcEE
Q 007672 217 PQP-FNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRV-IEEYFFRRGASV 294 (594)
Q Consensus 217 ~~~-~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~-~~l~~l~~G~~~ 294 (594)
..+ +++++++|||||||.||+|+++|+++.+.+..+...+.. .++.++|++++..|+.|..+.. ..+.++..|+++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~ 159 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLT 159 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEE
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCEE
Confidence 455 899999999999999999999999998776665432211 2678899999999987655544 567789999999
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHh
Q 007672 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (594)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
++.+. ++..+++.|+++++|+++++|+++..|++......... +
T Consensus 160 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-----------------------------------~ 204 (436)
T 3qov_A 160 VPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP-----------------------------------R 204 (436)
T ss_dssp ECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------T
T ss_pred EeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c
Confidence 98765 89999999999999999999999999986543221110 0
Q ss_pred hHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCc-eeccCCCCccccCccccCccCceEEeeec
Q 007672 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (594)
Q Consensus 374 l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 452 (594)
+ ++||.+++||+++++++.+.+.+.||+.+++.||+||+++. ........ ...+.+.+++.++|+|.
T Consensus 205 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~----~g~~~~~~~~~v~i~d~ 272 (436)
T 3qov_A 205 E--------TTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQEQ----NGMHFWEDCYLVEIIDP 272 (436)
T ss_dssp S--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTTC----SSEEECTTTEEEEEECT
T ss_pred c--------CCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCCC----CeeEEccCceEEEEEEC
Confidence 1 28999999999999999999999999999999999999654 33332211 33667788999999994
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCCC------c---EEEEeccCceeEcCC
Q 007672 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPNG------V---VKIIDRKKNLIKISQ 523 (594)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~dG------~---l~~~GR~~d~i~~~~ 523 (594)
+++. +++.|+.|||+|+|. +...|.++||+|||+|++++|| + +++.||.||+|++ +
T Consensus 273 ~~g~--~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~-~ 337 (436)
T 3qov_A 273 ETGE--PVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII-K 337 (436)
T ss_dssp TTCS--BCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-T
T ss_pred CCCC--CCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-C
Confidence 4444 445669999999983 2344578999999999999998 5 6999999999997 7
Q ss_pred ceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccccce------eee-----------------Eeeeec
Q 007672 524 GEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKVGI------LEW-----------------SCWFIP 574 (594)
Q Consensus 524 G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~~~------~~~-----------------~~~~~p 574 (594)
|++|+|.+||++|.+||+|.+++|++++++ .++++.. .... .++ ..++.+
T Consensus 338 G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~ 416 (436)
T 3qov_A 338 GVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKK 416 (436)
T ss_dssp TEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECT
T ss_pred CEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 999999999999999999999999987763 3344333 1111 111 224445
Q ss_pred Cceeeecccccccccc
Q 007672 575 GTLFTCSATKLYPLRA 590 (594)
Q Consensus 575 ~~i~~~~~gk~~r~~~ 590 (594)
..||+|+ ||++|.-.
T Consensus 417 ~~lP~t~-GKi~R~~~ 431 (436)
T 3qov_A 417 GSLPQSE-GKAVRVKD 431 (436)
T ss_dssp TCCC--------CEEE
T ss_pred CcccCcC-CcceEEEe
Confidence 5999999 99988643
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=6.1e-42 Score=361.14 Aligned_cols=312 Identities=15% Similarity=0.119 Sum_probs=239.8
Q ss_pred CCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh-hHHHHHHHHHHhhhcCcEE
Q 007672 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (594)
Q Consensus 216 ~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~~~~~~l~~l~~G~~~ 294 (594)
...++++++++|||||||.||+|+++|+++......+...+.. .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~ 165 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMV 165 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEE
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEE
Confidence 3467899999999999999999999999998766554432111 267899999999999 5777776777888999999
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHh
Q 007672 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (594)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
++.+. ++..+++.|+++++|+++++|+++..|++......... +
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------------------------~ 210 (443)
T 2y4o_A 166 VPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP-----------------------------------A 210 (443)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------G
T ss_pred EECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c
Confidence 88766 99999999999999999999999999876533211100 0
Q ss_pred hHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCc-eeccCCCCccccCccccCccCceEEeeec
Q 007672 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (594)
Q Consensus 374 l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 452 (594)
+ +++|.+++||+++++++.+.+.+.+|+.+++.||+||+++. .....+... ...+.+.+++.++|+|.
T Consensus 211 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d~ 279 (443)
T 2y4o_A 211 E--------SSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIIDP 279 (443)
T ss_dssp G--------SSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEECT
T ss_pred c--------CCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEcC
Confidence 1 28999999999999999999998889999999999998543 333222111 12455678999999993
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC-CcE-----EEEeccCceeEcCCcee
Q 007672 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN-GVV-----KIIDRKKNLIKISQGEY 526 (594)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d-G~l-----~~~GR~~d~i~~~~G~~ 526 (594)
+++. +++.|+.|||+|+|. +.+.|.++||+|||+|++++| |++ ++.||.||+|++ +|++
T Consensus 280 ~~g~--~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~~ 344 (443)
T 2y4o_A 280 VTGE--VLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGVN 344 (443)
T ss_dssp TTCC--BCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTEE
T ss_pred CCCC--CCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCEE
Confidence 3344 455668999999983 234456899999999999999 987 899999999997 7999
Q ss_pred echHHHHHHHhcCCCccceEEeecCCc------hhhccccc-------ccceeee-----------------EeeeecCc
Q 007672 527 VALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQ-------KVGILEW-----------------SCWFIPGT 576 (594)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~-------~~~~~~~-----------------~~~~~p~~ 576 (594)
|+|.+||++|.+||+|.+++|++++++ +++++... ..+..++ ..++.++.
T Consensus 345 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~ 424 (443)
T 2y4o_A 345 VFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGG 424 (443)
T ss_dssp ECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTC
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCc
Confidence 999999999999999999999886543 33333221 0111111 12334468
Q ss_pred eeeecccccccccc
Q 007672 577 LFTCSATKLYPLRA 590 (594)
Q Consensus 577 i~~~~~gk~~r~~~ 590 (594)
||+|++||++|...
T Consensus 425 lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 425 IPATATGKARRVID 438 (443)
T ss_dssp SCCCTTSCCCSEEE
T ss_pred ccCccCCcceEEEe
Confidence 99999999999753
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.1e-41 Score=358.66 Aligned_cols=312 Identities=17% Similarity=0.111 Sum_probs=240.0
Q ss_pred CCCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh-hHHHHHHHHHHhhhcCcEE
Q 007672 216 PPQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASV 294 (594)
Q Consensus 216 ~~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~~~~~~l~~l~~G~~~ 294 (594)
...++++++++|||||||.||+|+++|+++...+..+...+.. .++.++|++++.+|+ +|..++...+.++..|+++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 163 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTV 163 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCEE
Confidence 3467899999999999999999999999998776554432111 267889999999998 6777777778889999999
Q ss_pred EEecC-ChHHHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhccCCCCcchHHHHHh
Q 007672 295 GYYHG-DLNALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYKLAWMNMGYKQREASPLADLLA 373 (594)
Q Consensus 295 ~~~~~-~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (594)
++.+. ++..+++.|+++++|+++++|+++..|++......... +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~-----------------------------------~ 208 (437)
T 2y27_A 164 IPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP-----------------------------------V 208 (437)
T ss_dssp ECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------G
T ss_pred EeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------c
Confidence 88766 99999999999999999999999999876543211100 0
Q ss_pred hHHHHHHhCCceeEEEEccCCCCHHHHHHHHHhcCCceEeeecccCCCCc-eeccCCCCccccCccccCccCceEEeeec
Q 007672 374 FRKVKARLGGRLRLVISGGAPLSTEVEEFLRVTCCAFLVQGYGLTETCGP-TTVCFPDEMCMVGTAGPVSVYSELRLEEV 452 (594)
Q Consensus 374 l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~~~~~~~i~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~~~~~~~~~i~d~ 452 (594)
+ +++|.+++||+++++++.+.+.+.+|+.+++.||+||+++. +....+... ...+.+.+++.++|+|.
T Consensus 209 ~--------~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d~ 277 (437)
T 2y27_A 209 Q--------SSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIIDP 277 (437)
T ss_dssp G--------SSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEECT
T ss_pred c--------CCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEcC
Confidence 1 28999999999999999999998889999999999998543 333322211 12556778999999993
Q ss_pred CCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC-CCcE-----EEEeccCceeEcCCcee
Q 007672 453 PEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP-NGVV-----KIIDRKKNLIKISQGEY 526 (594)
Q Consensus 453 ~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~-dG~l-----~~~GR~~d~i~~~~G~~ 526 (594)
+++ .+++.|+.|||+|+|. +.+.|.++||+|||+|++++ ||++ ++.||.||+|++ +|++
T Consensus 278 ~~g--~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~~ 342 (437)
T 2y27_A 278 ETG--EVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGVN 342 (437)
T ss_dssp TTC--CBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTEE
T ss_pred CCC--CCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCeE
Confidence 334 4455679999999982 23445789999999999998 6985 899999999997 8999
Q ss_pred echHHHHHHHhcCCCccceEEeecCCc------hhhccccccc-----ceeee-----------------EeeeecCcee
Q 007672 527 VALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQKV-----GILEW-----------------SCWFIPGTLF 578 (594)
Q Consensus 527 v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~~-----~~~~~-----------------~~~~~p~~i~ 578 (594)
|+|.+||++|.+||+|.+++|++++++ +++++..... +..++ ..++.++.||
T Consensus 343 v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP 422 (437)
T 2y27_A 343 VFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIE 422 (437)
T ss_dssp ECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSC
T ss_pred ECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCcc
Confidence 999999999999999999998886542 3333332111 10111 2233346899
Q ss_pred eeccccccccccc
Q 007672 579 TCSATKLYPLRAE 591 (594)
Q Consensus 579 ~~~~gk~~r~~~~ 591 (594)
+|+ ||++|...+
T Consensus 423 ~t~-GKi~r~~~~ 434 (437)
T 2y27_A 423 RSV-GKARRVVDK 434 (437)
T ss_dssp CCS-SSCCCEEEC
T ss_pred CCC-CcceEEEec
Confidence 999 999997644
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.95 E-value=1e-27 Score=246.07 Aligned_cols=237 Identities=17% Similarity=0.149 Sum_probs=172.2
Q ss_pred CCCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecCh-hHHHHHHHHHHhhhcCcEEE
Q 007672 217 PQPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPL-AHILDRVIEEYFFRRGASVG 295 (594)
Q Consensus 217 ~~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl-~~~~~~~~~l~~l~~G~~~~ 295 (594)
..++++++++|||||||.||+|+++|+++...+..+...+. ..++..+|++++.+|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 36788999999999999999999999999998875443221 1267889999999999 99999888777788899443
Q ss_pred EecCChH-----------------------HHHHHHhhhcCeEEEechHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 007672 296 YYHGDLN-----------------------ALRDDLMELKPTLLAGVPRVFEKIHEGIKKALEELRPLRRRIFDALYKYK 352 (594)
Q Consensus 296 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (594)
....++. .+++.|+++++|+++++|+++..|++.....
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~------------------- 226 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVV------------------- 226 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHH-------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhh-------------------
Confidence 3333666 7888999999999999999999987642211
Q ss_pred HHHHhhccCCCCcchHHHHHhhHHHHHHhCCceeEEEEccCCCCHHHHHHHH-Hhc-CCceEeeecccCCCCceeccCCC
Q 007672 353 LAWMNMGYKQREASPLADLLAFRKVKARLGGRLRLVISGGAPLSTEVEEFLR-VTC-CAFLVQGYGLTETCGPTTVCFPD 430 (594)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~slr~i~~~G~~l~~~~~~~~~-~~~-~~~i~~~yG~tE~~~~~~~~~~~ 430 (594)
..+++ +||.+++||+++++++.+.+. +.| ++.+++.||+||+++++.....
T Consensus 227 ------------------~~~~~--------~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 227 ------------------LQMKQ--------SLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp ------------------HHHHH--------HCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred ------------------ccccC--------CeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 11222 899999999999999999999 888 8999999999999876643321
Q ss_pred CccccCccccC------ccCceEEeeecCCCCCCCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEc
Q 007672 431 EMCMVGTAGPV------SVYSELRLEEVPEMGYSPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQIL 504 (594)
Q Consensus 431 ~~~~~~~~G~~------~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~ 504 (594)
.++|.+ .++++++|+|.+++. +++.|+.|||+|++..- ..+ --.|+|||++...
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD~~~g~--~vp~G~~GEl~vt~l~~------------~~~-l~ry~tgD~~~~~ 339 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVDSITAQ--TVEYGERGNVIVTHLSP------------WAF-YPRVAERDTAIRL 339 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEECTTTCS--BCCTTCEEEEEEEEEET------------TEE-EEEEEEEEEEEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEECCCCCc--CCCCCCceEEEEEEcCc------------ccc-cccccCCceEEEe
Confidence 147888 999999999922444 55567999999998321 111 1137899988875
Q ss_pred CC--C-------cEEEEeccCceeEc
Q 007672 505 PN--G-------VVKIIDRKKNLIKI 521 (594)
Q Consensus 505 ~d--G-------~l~~~GR~~d~i~~ 521 (594)
+. | .+..++|.++..+|
T Consensus 340 ~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 340 PGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp CCSTTCSSCEEEEEEECC--------
T ss_pred cCCCCCcCcccccceeccccCCCcee
Confidence 43 2 24456666666665
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.00 E-value=1.7e-10 Score=95.08 Aligned_cols=78 Identities=9% Similarity=0.006 Sum_probs=54.1
Q ss_pred eccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhcccccc----------------------cc
Q 007672 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRRHQK----------------------VG 564 (594)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~~~~----------------------~~ 564 (594)
.|.||||++ +|.||+|.+||++|.+||+|.+++|++++++ .++++.... .+
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g 79 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC
Confidence 389999997 7999999999999999999999999988764 222221110 11
Q ss_pred eeeeEeeeecCceeeecccccccc-cccc
Q 007672 565 ILEWSCWFIPGTLFTCSATKLYPL-RAEE 592 (594)
Q Consensus 565 ~~~~~~~~~p~~i~~~~~gk~~r~-~~~~ 592 (594)
+..-+.++.|++||+| +||++|- .+||
T Consensus 80 v~~~v~~v~~~~lPrt-sGKi~Rv~D~R~ 107 (109)
T 3lax_A 80 VTPRVKLVPKGALPKS-EGKAVRVKDLRK 107 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCEEECSC
T ss_pred CccceEEEcCCeecCC-CCCcchhhhhcc
Confidence 1111346667899998 6999984 3665
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=98.86 E-value=6.6e-10 Score=91.37 Aligned_cols=74 Identities=8% Similarity=-0.026 Sum_probs=51.6
Q ss_pred eccCceeEcCCceeechHHHHHHHhcCCCccceEEeecCCc------hhhccc-ccc----cceee--------------
Q 007672 513 DRKKNLIKISQGEYVALEYLENVYCVAPIIEDPQVNVSCSS------CAMRRR-HQK----VGILE-------------- 567 (594)
Q Consensus 513 GR~~d~i~~~~G~~v~~~~iE~~l~~~p~V~~~~V~g~~~~------~~~~~~-~~~----~~~~~-------------- 567 (594)
||.||+|++ +|.+|+|.+||++|.+||+|.++++++++++ .++++. +.. ....+
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEEcCccccchhHHHHHHHHHHHHHHHhhC
Confidence 899999997 7999999999999999999998888776653 223332 100 00011
Q ss_pred ---eEeeeecCceeeecccccccc
Q 007672 568 ---WSCWFIPGTLFTCSATKLYPL 588 (594)
Q Consensus 568 ---~~~~~~p~~i~~~~~gk~~r~ 588 (594)
-..++.|++||+| +||++|.
T Consensus 80 ~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CceEEEEECCCCccCC-CCceEEE
Confidence 1346677899999 9999985
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.84 E-value=1.1e-07 Score=100.33 Aligned_cols=132 Identities=18% Similarity=0.137 Sum_probs=82.0
Q ss_pred eeEEEEccCCCCHHHHHHHHHhc-CCceE-eeecccCCCCceeccCCCCccccCccc-cCccCc-eEEeeecCCCC-C--
Q 007672 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEMG-Y-- 457 (594)
Q Consensus 385 lr~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i~d~~~~~-~-- 457 (594)
+..++.||. ..-...++..+ +.+++ ..|++||+ .+.....+.... ...+ ..+++. -.+.++.++.+ +
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~~--~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSET-TFGINLDPLCKP--EDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSC-EEEECSCTTSCG--GGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccc-eeeeccCCCCCc--ccCceeecCCcEEEEEEeccccCCCcE
Confidence 555556662 22334444443 67777 89999995 333322222111 1222 223332 33444422211 1
Q ss_pred ---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC----CCcEEEEeccCceeEcCCceeechH
Q 007672 458 ---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQGEYVALE 530 (594)
Q Consensus 458 ---~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~----dG~l~~~GR~~d~i~~~~G~~v~~~ 530 (594)
..+..|+.+||+++..+ |.|+ |++||+.+++. ...+.|.||.+|+|++ .|+++++.
T Consensus 376 v~l~eVe~G~~YelViTt~~---GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNFA---GLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EEGGGCCTTCEEEEEEECSS---SCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred eCHHHcCCCceEEEEEeecc---ceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 11225688999998852 4333 99999999975 3579999999999996 79999999
Q ss_pred HHHHHHhcC
Q 007672 531 YLENVYCVA 539 (594)
Q Consensus 531 ~iE~~l~~~ 539 (594)
+||++|.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999854
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.80 E-value=1.2e-07 Score=99.98 Aligned_cols=131 Identities=14% Similarity=0.119 Sum_probs=80.6
Q ss_pred eeEEEEccCCCCHHHHHHHHHhc-CCceE-eeecccCCCCceeccCCCCccccCccc-cCccCc-eEEeeecCCC-----
Q 007672 385 LRLVISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEM----- 455 (594)
Q Consensus 385 lr~i~~~G~~l~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i~d~~~~----- 455 (594)
+..++.|| + ..-...++..+ +.+++ ..|++||+ .+.....+.... ...+ ..+|+. -.+.++.++.
T Consensus 307 l~~~~tG~--~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~p--~~~~~~L~p~~~ffEFIP~~~~~~~~~ 380 (609)
T 4b2g_A 307 LDVIVTGA--M-AQYIPTLDYYSGGLPLACTMYASSEC-YFGLNLNPMSKP--SEVSYTIMPNMAYFEFLPHEHSSIPLS 380 (609)
T ss_dssp EEEECSGG--G-GGGHHHHHHHHTSCCEECCEEECSSC-EEEECSCTTSCG--GGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred EEEEccCC--h-HHHHHHHHHHcCCCccccCcccccce-eeeeecCCCCCc--ccCceeecCCcEEEEEEeccccccccc
Confidence 44445555 3 22234444443 67777 89999996 333332222110 1112 122332 2334442221
Q ss_pred -C--C-----CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcC----CCcEEEEeccCceeEcCC
Q 007672 456 -G--Y-----SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILP----NGVVKIIDRKKNLIKISQ 523 (594)
Q Consensus 456 -~--~-----~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~----dG~l~~~GR~~d~i~~~~ 523 (594)
. . ..+..|+.+||+++.. .|.|+ |++||+++++. ...+.|.||.+++|++ .
T Consensus 381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 0 0 1233568899999774 35554 99999999974 4679999999999996 7
Q ss_pred ceeechHHHHHHHhc
Q 007672 524 GEYVALEYLENVYCV 538 (594)
Q Consensus 524 G~~v~~~~iE~~l~~ 538 (594)
|+++++.+||++|.+
T Consensus 444 Geki~~~~v~~av~~ 458 (609)
T 4b2g_A 444 SDKTDEAELQKAVDN 458 (609)
T ss_dssp SCCBCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH
Confidence 999999999999974
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.63 E-value=4e-07 Score=95.71 Aligned_cols=134 Identities=19% Similarity=0.150 Sum_probs=80.7
Q ss_pred CceeE--EEEccCCCCHHHHHHHHHhc-CCceE-eeecccCCCCceeccCCCCccccCccc-cCccCc-eEEeeecCCCC
Q 007672 383 GRLRL--VISGGAPLSTEVEEFLRVTC-CAFLV-QGYGLTETCGPTTVCFPDEMCMVGTAG-PVSVYS-ELRLEEVPEMG 456 (594)
Q Consensus 383 ~slr~--i~~~G~~l~~~~~~~~~~~~-~~~i~-~~yG~tE~~~~~~~~~~~~~~~~~~~G-~~~~~~-~~~i~d~~~~~ 456 (594)
+++++ ++.+|. + ..-...+++.+ +++++ ..|++||+ .+.....+.... +..+ ..+|+. -.+.++.++..
T Consensus 302 Pnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg-~~gi~~~p~~~~--~~~~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 302 PNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEG-WIAANVTPRLSP--EEATFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp TTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTE-EEEECCCTTSCT--TTCCEEECTTSCEEEEEEC----
T ss_pred CCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccce-eeeeecCCCCCc--cccceeecCCcEEEEEEeccccc
Confidence 47753 344442 3 22224444444 67777 89999996 333333222211 1122 223333 22334322111
Q ss_pred -----C---CCCCCCCCceEEEccCCcccccCCCchhhhhcccCCccccCceEEEcCC----CcEEEEeccCceeEcCCc
Q 007672 457 -----Y---SPLDDPPCGEVCVRGKTLFSGYYKNPDLTRESIIDGWFHTGDIGQILPN----GVVKIIDRKKNLIKISQG 524 (594)
Q Consensus 457 -----~---~~~~~~~~Gei~v~g~~v~~gY~~~~~~~~~~~~~g~~~TGDlg~~~~d----G~l~~~GR~~d~i~~~~G 524 (594)
. ..+..|+.+||+++... |.|+ |++||+.++..- ..+.|.||.++++++ .|
T Consensus 377 ~~~~~~v~l~eve~G~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~G 439 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-NI 439 (581)
T ss_dssp ---CCCEEGGGCCTTCEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-SS
T ss_pred CCCCceeeHHHcCCCCeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-ee
Confidence 0 12335688999998853 4333 999999999642 469999999999997 79
Q ss_pred eeechHHHHHHHhc
Q 007672 525 EYVALEYLENVYCV 538 (594)
Q Consensus 525 ~~v~~~~iE~~l~~ 538 (594)
+++++.+||++|.+
T Consensus 440 e~~~~~~v~~al~~ 453 (581)
T 4epl_A 440 DKNTERDLQLSVES 453 (581)
T ss_dssp CCBCHHHHHHHHHH
T ss_pred eECCHHHHHHHHHH
Confidence 99999999999975
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=94.10 E-value=0.58 Score=47.86 Aligned_cols=124 Identities=14% Similarity=0.060 Sum_probs=90.1
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~~A~~~~G~~~v~ 130 (594)
.++.++++.. ..|.+|.++ .+|...+...+..++..+...|+.++|++....+.+ ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHA--SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEE--CCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 3456665544 156677665 568899988888888888788999999999888853 4445567888999999887
Q ss_pred cCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccccc-----ccccccEEEEecC
Q 007672 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS 181 (594)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~ 181 (594)
++.. +++.+...+++.++++++........+.+.... ....++.+++-+.
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 220 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAE 220 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCc
Confidence 7654 788999999999999999988777665443211 1245666666544
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.02 E-value=1.2 Score=45.56 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=89.8
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeec
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPL 131 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~~A~~~~G~~~v~i 131 (594)
++.++++.. ..|.+|.++ .+|...+...+..++..+...|+.++|+++..++.+ ...+...++++..|+.++++
T Consensus 91 ~~~~~~i~~--TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 91 REQVVRVHA--SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp GGGCCEEEE--ECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred hhheEEEEE--CCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 455564443 157788776 568889888888888888788999999999888853 34455678888999998877
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhHHHHhccccc-----ccccccEEEEecC
Q 007672 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~ 181 (594)
+.. +++.+...+++.++++++........+.+.... ....++.++.-+.
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe 222 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAE 222 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESS
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCC
Confidence 654 788899999999999999988776665443211 1245666666544
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.98 E-value=0.97 Score=46.10 Aligned_cols=123 Identities=8% Similarity=-0.058 Sum_probs=90.8
Q ss_pred CCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEeecC
Q 007672 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVPLY 132 (594)
Q Consensus 57 d~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~~A~~~~G~~~v~i~ 132 (594)
+.+|++.. ..|.+|.++ .+|...+...+..++..+...|+.++|+++...+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~--TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHS--SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEE--CSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEE--CCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 55565544 156777665 578999998888888888888999999999988753 444556788899999988775
Q ss_pred CCCChhHHHHHHhhcCceEEEEcchhHHHHhccccc-----ccccccEEEEecCC
Q 007672 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCR-----SAQRLRVMVCFTSL 182 (594)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~ 182 (594)
+. .++.+...+++.++++++........+.+.... ....++.++.-+..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 678899999999999999988877666443221 13456676665543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=90.17 E-value=3.7 Score=42.53 Aligned_cols=121 Identities=7% Similarity=0.013 Sum_probs=86.0
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~-~~~~~~A~~~~G~~~v~i 131 (594)
.|+.+|++.. ..|.+|.++ .+|...+...+..+.. ..++.++|+++..+|-.-. .+..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~--TSGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMF--TSGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEE--CCTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 4677777655 256677665 5688888777666544 3488999999888776532 234467788899988877
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecC
Q 007672 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 181 (594)
+ ..+++.+...+++.++++++........+..........++.++..+.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 467899999999999999999988877765544333335666655443
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=89.80 E-value=1.8 Score=42.93 Aligned_cols=123 Identities=13% Similarity=0.036 Sum_probs=80.0
Q ss_pred CCCCcceEeecccCCCCCCcEE--EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc--hhHHHHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYVW--KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC--PQWVEAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~~--~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~--~~~~~~~~A~~~~G~~~v~ 130 (594)
.++.++++.. ..|.+|.++. +|...+...+..++..+...|+.++|+++..++-+ ..-....++++..|+.+++
T Consensus 89 ~~~~~a~i~~--TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYE--SGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEE--ECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEE--CCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 3566666554 1577887764 57788888777776777777999999999988862 2334445556888985554
Q ss_pred cCCCCChh-----------------------HHHHHHhhcCceEEEEcchhHHHHhcccc---cccccccEEEEecC
Q 007672 131 LYDTLGPG-----------------------AVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (594)
Q Consensus 131 i~~~~~~~-----------------------~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 181 (594)
.+ .++. .+...+++.++++++........+.+... .....++.++.-+.
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe 241 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGT 241 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESS
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCc
Confidence 43 3344 66779999999999998887776654321 12345666655543
No 47
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=85.02 E-value=12 Score=38.98 Aligned_cols=121 Identities=7% Similarity=-0.076 Sum_probs=84.5
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HH-HHHHHHhcCCEEe
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~--~~-~~~A~~~~G~~~v 129 (594)
.|+.+|++.. ..|.+|.+| .+|...+...+...... .++.++|+++..+|-+-.+ .. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQL--SGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEe--CCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 4677777655 246677665 67888887776655443 3788999988888765333 32 4788889999888
Q ss_pred ecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc---ccccccccEEEEecC
Q 007672 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (594)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~ 181 (594)
..+ ..+++.+...+++.++++++........+.+.. ......++.++.-+.
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~ 308 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGA 308 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESS
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCC
Confidence 764 467889999999999999999887766654332 123356666666544
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=84.24 E-value=7.1 Score=40.98 Aligned_cols=121 Identities=11% Similarity=-0.017 Sum_probs=82.5
Q ss_pred CCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HHHHHHHHhcCCEEeecC
Q 007672 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VEAMEACNALSLICVPLY 132 (594)
Q Consensus 57 d~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~--~~~~~A~~~~G~~~v~i~ 132 (594)
+.+|++.. ..|.+|.++ .+|...+...+......+...++.++|+++..+|-+-.+ ...+++++ .|+..+.++
T Consensus 192 ~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMN--SSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEEC--CSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEe--CCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 66776655 246666654 688988887766655443335788999988887765333 33456777 999888775
Q ss_pred CCCChhHHHHHHhhcCceEEEEcchhHHHHhcccc---cccccccEEEEecC
Q 007672 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (594)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 181 (594)
..+++.+...+++.++++++........+.+... .....++.++.-+.
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 4678999999999999999998887766643221 12345666655443
No 49
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=82.68 E-value=12 Score=39.02 Aligned_cols=122 Identities=11% Similarity=-0.048 Sum_probs=83.5
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH--HH-HHHHHHhcCCEEe
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW--VE-AMEACNALSLICV 129 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~--~~-~~~A~~~~G~~~v 129 (594)
.++.+|++.. ..|.+|.+| .+|...+...+...+.. .++.++|+++..+|.+..+ .. .+++++..|+..+
T Consensus 189 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQL--SGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEE--CCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEE--CCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 3567777655 146677665 67888888777666544 4889999999888765433 22 4788888999887
Q ss_pred ecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc---ccccccccEEEEecCC
Q 007672 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTSL 182 (594)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 182 (594)
..+ ...+..+...+++.++++++........+.+.. ......++.+++-+..
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 764 457888899999999999999887766554332 1233466666665543
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=81.66 E-value=14 Score=38.24 Aligned_cols=119 Identities=8% Similarity=-0.057 Sum_probs=78.8
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEeec
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~v~i 131 (594)
|+.+|++.. ..|.+|.+| .+|...+...+..++..+ ++.++|+++..+|-.-.+- ..+++++ .|+..+..
T Consensus 169 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMY--TSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEE--CCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 466666554 156777776 678888877776665543 8899999998888764432 2345555 88887766
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc---ccccccccEEEEecC
Q 007672 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~ 181 (594)
+...++.+...+.+.+++++.........+.... ......++.++.-+.
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGA 294 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSS
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCC
Confidence 4568889999999999999999887766554321 112345666655544
No 51
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=81.54 E-value=6.9 Score=41.31 Aligned_cols=122 Identities=9% Similarity=-0.012 Sum_probs=86.1
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch-hHHHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP-QWVEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~-~~~~~~~A~~~~G~~~v~i 131 (594)
.|+.+|++.. ..|.+|.+| .+|...+...... ....++.++|+++..+|-+. -....+++++..|+..+.+
T Consensus 212 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMF--TSGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEEC--CSSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 4677777655 246677665 6787776543221 22347889999988888753 3455677888899988777
Q ss_pred CC-CCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCC
Q 007672 132 YD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (594)
Q Consensus 132 ~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (594)
.. ...+..+...+++.+++++.........+.+........++.++.-+..
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 54 4578899999999999999999888777765555556677777776553
No 52
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=80.95 E-value=6.5 Score=42.06 Aligned_cols=122 Identities=13% Similarity=0.014 Sum_probs=85.7
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~~A~~~~G~~~v~i 131 (594)
.|+.+|++.. ..|.+|.+| .+|...+...+.. ....++.++|+++..++-+-+. +..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiy--TSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINF--SSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEE--EBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEE--CCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 4677776655 157788776 5677666543322 2234789999999988876544 44467888899987776
Q ss_pred C-CCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCC
Q 007672 132 Y-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (594)
Q Consensus 132 ~-~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (594)
+ ...+++.+...+++.++++++........+..........++.+++-+..
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 34678899999999999999998887776654444455677777776554
No 53
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=79.82 E-value=22 Score=37.85 Aligned_cols=121 Identities=10% Similarity=-0.066 Sum_probs=83.8
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCch--hHHH-HHHHHHhcCCEEee
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCP--QWVE-AMEACNALSLICVP 130 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~--~~~~-~~~A~~~~G~~~v~ 130 (594)
|+.+|++.. ..|.+|.+| .+|...+...+......+ ++.++|+++..+|.+. ++.. .+++++..|+..+.
T Consensus 183 ~~~~a~ii~--TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQL--SGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEE--CCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEE--CCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 567776655 156677665 678888877766655443 7899999998888543 3332 47788888988877
Q ss_pred cCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccc-----cccccccEEEEecCC
Q 007672 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 182 (594)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~ 182 (594)
.+. .++..+...+++.+++++.........+..... .....++.+++-+..
T Consensus 258 ~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 258 AAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp CSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred eCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 654 567888899999999999998877665543321 134566777665543
No 54
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=79.19 E-value=13 Score=38.39 Aligned_cols=122 Identities=8% Similarity=-0.119 Sum_probs=83.8
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~~A~~~~G~~~v~i 131 (594)
.++.+|++.. ..|.+|.++ .+|...+...+..+.. ..++.++|+++..+|-+..+ +..+++++..|+..+.+
T Consensus 141 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIY--TSGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEE--ECCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 3566666554 157788776 6788888776655543 34788999999888876443 44578889999988876
Q ss_pred CCC--CChhHHHHHHhhcCceEEEEcchhHHHHhccc---ccccccccEEEEecC
Q 007672 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~ 181 (594)
+.. ..++.+...+++.++++++........+.... ......++.++..+.
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecC
Confidence 542 46778899999999999999888776654322 122345566555443
No 55
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=78.63 E-value=13 Score=38.39 Aligned_cols=122 Identities=9% Similarity=-0.055 Sum_probs=81.0
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~~A~~~~G~~~v~i 131 (594)
.++.+|++.. ..|.+|.++ .+|...+...+..... ..++.++|+++..+|-+-.+ +..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~--TSGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIY--TSGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEE--ECC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 3566666554 156777766 5788888776655543 34889999999988866332 44578888999998877
Q ss_pred CCC--CChhHHHHHHhhcCceEEEEcchhHHHHhcccc---cccccccEEEEecC
Q 007672 132 YDT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 181 (594)
+.. ..++.+...+++.++++++........+..... .....++.++..+.
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 653 467889999999999999998887766543221 22345666665543
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=78.14 E-value=10 Score=39.24 Aligned_cols=121 Identities=13% Similarity=0.056 Sum_probs=80.9
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCC--CCCCEEEEEeCCchhHH--HHHHHHHhcCCEE
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGA--EPGCRVGIYGANCPQWV--EAMEACNALSLIC 128 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi--~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~ 128 (594)
.|+.+|++.. ..|.+|.+| .+|...+...+..+.. ..++ .++|+++..+|-.-.+- ..+++++..|+..
T Consensus 151 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFY--TSGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEE--CCC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 4677777655 256677665 6788888766655543 3467 77888888777654432 3578888999998
Q ss_pred eecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc-----ccccccccEEEEecC
Q 007672 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-----CRSAQRLRVMVCFTS 181 (594)
Q Consensus 129 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~ 181 (594)
+..+. ..++.+...+++.++++++........+.... ......++.++.-+.
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~ 282 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGA 282 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCT
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCC
Confidence 87754 67888999999999999999887776664432 112345666665443
No 57
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=77.54 E-value=29 Score=35.76 Aligned_cols=119 Identities=8% Similarity=-0.087 Sum_probs=76.2
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHH-HHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEA-CNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~~A-~~~~G~~~v~ 130 (594)
.++.+|++.. ..|.+|.+| .+|...+...+..+... .++.++|+++..+|-.-.+ +...+. ++..|..++
T Consensus 158 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~- 231 (509)
T 3ivr_A 158 GAADGFVIIH--TAAVGGRPRGALISQGNLLIAQSSLVDA---WRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVI- 231 (509)
T ss_dssp CTTSEEEEEE--EEC--CCEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEE-
T ss_pred CccccEEEEe--CCCCCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEE-
Confidence 4566666554 157788776 67888887776665543 4889999999888765433 223334 444454444
Q ss_pred cCCCCChhHHHHHHhhcCceEEEEcchhHHHHhccc-ccccccccEEEEec
Q 007672 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPD-CRSAQRLRVMVCFT 180 (594)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~-~~~~~~~~~v~~~~ 180 (594)
+. ..+++.+...+++.++++++........+.... ......++.++...
T Consensus 232 ~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g 281 (509)
T 3ivr_A 232 AA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLD 281 (509)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEEC
T ss_pred ec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccC
Confidence 43 668899999999999999998887776654432 22334555555444
No 58
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=76.92 E-value=14 Score=38.66 Aligned_cols=123 Identities=7% Similarity=-0.090 Sum_probs=79.7
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHHHHhcCCEEeecC
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEACNALSLICVPLY 132 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~-~~~~~~A~~~~G~~~v~i~ 132 (594)
++.+|++.. ..|.+|.++ .+|...+...+......+...++.++|+++..+|-+-. .+...++++..|+..+.+.
T Consensus 189 ~~d~a~i~~--TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 266 (550)
T 3rix_A 189 DKTIALIMN--SSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY 266 (550)
T ss_dssp TTSEEEEEE--C-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCEEEEEE--CCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 355666554 146677665 66788777665554443333578899998888776533 2345667788899888764
Q ss_pred CCCChhHHHHHHhhcCceEEEEcchhHHHHhcccc---cccccccEEEEecC
Q 007672 133 DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (594)
Q Consensus 133 ~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 181 (594)
..+++.+...+++.++++++........+..... .....++.++.-+.
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 267 -RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp -SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 4678899999999999999999887766644321 12345666666544
No 59
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=75.89 E-value=16 Score=38.55 Aligned_cols=122 Identities=2% Similarity=-0.191 Sum_probs=83.8
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~v~ 130 (594)
.|+.+|++.. ..|.+|.+| .+|...+...+..+.. ..++.++|+++..+|-+-.+- ..+++++..|+..+.
T Consensus 165 ~~~d~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQY--TSGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEE--CSSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CcCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 4677777655 256677665 6789888887766654 348899999998888775543 337888899999887
Q ss_pred cCCCC---ChhHHHHHHhhcCceEEEEcchhHHHHhcccc------cccccccEEEEecC
Q 007672 131 LYDTL---GPGAVNFILDHAEIDFVFVQDKKVKELLSPDC------RSAQRLRVMVCFTS 181 (594)
Q Consensus 131 i~~~~---~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~------~~~~~~~~v~~~~~ 181 (594)
..+.. .+..+...+++.+++++.........+.+... .....++.++.-+.
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 299 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCC
Confidence 76532 56788899999999998887765554433211 12345566655443
No 60
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=75.44 E-value=7 Score=38.43 Aligned_cols=109 Identities=20% Similarity=0.122 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh-HHHHHHH
Q 007672 44 AWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ-WVEAMEA 120 (594)
Q Consensus 44 l~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~-~~~~~~A 120 (594)
..+.+..+ ++|.+|++.. ..|.+|.+| .+|...+...+..++.. .++.++|+++..+|-+-. .+..++.
T Consensus 27 ~~~~~~~w---~~d~~a~Il~--TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~ 98 (358)
T 4gs5_A 27 AYDFMEKW---LGGAREFVLH--TSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVR 98 (358)
T ss_dssp HHHHHHHH---HHTCSEEEEE--EECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hhhHhhcc---CCCCCEEEEE--CCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHH
Confidence 34444444 4466666554 157788776 68998888777665543 488999999988876532 2444566
Q ss_pred HHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcchhHHHHh
Q 007672 121 CNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELL 163 (594)
Q Consensus 121 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~ 163 (594)
.+..|+..+..++.... ...+++.+++++.........+.
T Consensus 99 ~l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll 138 (358)
T 4gs5_A 99 GMELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSIL 138 (358)
T ss_dssp HHHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHHH
T ss_pred HHHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHhh
Confidence 66778777766654332 34677888999988877666554
No 61
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=74.69 E-value=17 Score=38.32 Aligned_cols=123 Identities=11% Similarity=-0.060 Sum_probs=81.2
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~v~ 130 (594)
.|+.+|++.. ..|.+|.++ .+|.. +....... .....++.++|++...++.+-.+- ..+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~--TSGTTG~PKgV~~sh~-~~~~~~~~--~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYF--TSGTSGLPKMAEHSYS-SLGLKAKM--DAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEE--CCCSSSSCCEEEEEHH-HHHHHHHH--HTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEE--CCCCCCCCCEEEechH-HHHhhhhh--hhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 3566676654 256777766 56777 43311111 123458899999888887764443 346778888988777
Q ss_pred cCC-CCChhHHHHHHhhcCceEEEEcchhHHHHhcccc--cccccccEEEEecCC
Q 007672 131 LYD-TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSL 182 (594)
Q Consensus 131 i~~-~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~ 182 (594)
... ...++.+...+++.++++++........+.+... .....++.++..+..
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 653 6688999999999999999999887776654321 123456666665543
No 62
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=73.31 E-value=13 Score=38.83 Aligned_cols=124 Identities=12% Similarity=-0.119 Sum_probs=81.3
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~~A~~~~G~~~v~i 131 (594)
.++.+|++.. ..|.+|.+| .+|...+...+.... .....++.++|+++..+|-.-.+ +..+++++..|+..+..
T Consensus 174 ~~~~~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~-~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l~~G~~~v~~ 250 (541)
T 1v25_A 174 PERAACGMAY--TTGTTGLPKGVVYSHRALVLHSLAAS-LVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLP 250 (541)
T ss_dssp CTTSEEEEEE--ECSSSSSCEEEEEEHHHHHHHHHHTT-STTTTCCCTTCEEEECSCTTSHHHHTHHHHHHHHTCEEEEC
T ss_pred CCCCcEEEEE--CCCCCCCCcEeeeehHHHHHHHhhhh-hcccccCCCCCEEEEeccchhhhHHHHHHHHHhcCceEEee
Confidence 3566665543 157788776 567777754433211 01123778899988887764332 23457778889988887
Q ss_pred CCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccc---cccccccEEEEecC
Q 007672 132 YDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC---RSAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~---~~~~~~~~v~~~~~ 181 (594)
++..+++.+...+++.++++++........+.+... .....++.+++-+.
T Consensus 251 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 303 (541)
T 1v25_A 251 GPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGS 303 (541)
T ss_dssp TTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSS
T ss_pred CCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCC
Confidence 766789999999999999999998877665543321 13345666665443
No 63
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=70.53 E-value=23 Score=37.92 Aligned_cols=123 Identities=9% Similarity=0.014 Sum_probs=82.5
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEeec
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~v~i 131 (594)
++.++++.. ..|.||.+| .+|...+...+..... ...++.++|++....+-+-..- ..+++.+..|+..+..
T Consensus 255 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 255 AEDPLFILY--TSGSTGKPKGVLHTTGGYLVYAATTFK--YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp TTSEEEEEE--ECCSSSSCEEEEEESHHHHHHHHHHHH--HHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred CCCCEEEEe--ccCCCCCCceEEECchHHHHHHHHHHH--HhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 566666554 157788777 5576666544322111 1247899999888877664443 3467889999998877
Q ss_pred CCC---CChhHHHHHHhhcCceEEEEcchhHHHHhcccc-----cccccccEEEEecCC
Q 007672 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTSL 182 (594)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~ 182 (594)
+.. ..++.+..++++.+++++++.......+.+... .....++.++..+..
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~ 389 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEP 389 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSC
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCC
Confidence 642 467889999999999999998887776654332 123567777665543
No 64
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=70.49 E-value=18 Score=38.24 Aligned_cols=123 Identities=8% Similarity=-0.119 Sum_probs=79.7
Q ss_pred CCCCcceEeecccCCCCCCcEEEeH--HHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYVWKTY--KEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~~~Ty--~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~v~ 130 (594)
.++.+|++.. ..|.+|.+|-+.+ ..+...+ .......++.+++++....+.+.... ..+++.+..|+.+++
T Consensus 223 ~~~d~a~i~~--TSGTTG~PKgV~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 297 (580)
T 3etc_A 223 KNEDICLVYF--SSGTAGFPKMVEHDNTYPLGHI---LTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFV 297 (580)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEETTHHHHHH---HHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEE
T ss_pred CCCCcEEEEE--eCCCCCCccEEEeccHHHHHHH---HHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEE
Confidence 4566666554 2577888885543 3222221 11122347889998888777664433 346888999999887
Q ss_pred cC-CCCChhHHHHHHhhcCceEEEEcchhHHHHhcccc--cccccccEEEEecCC
Q 007672 131 LY-DTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC--RSAQRLRVMVCFTSL 182 (594)
Q Consensus 131 i~-~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~ 182 (594)
.+ ....++.+...+++.++++++........+..... .....++.++..+..
T Consensus 298 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~ 352 (580)
T 3etc_A 298 YDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEP 352 (580)
T ss_dssp EECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSC
T ss_pred ecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCC
Confidence 75 56688899999999999999998887766654321 123456666665443
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=67.57 E-value=30 Score=37.17 Aligned_cols=122 Identities=10% Similarity=-0.068 Sum_probs=79.9
Q ss_pred CCCcceEeecccCCCCCCcEE--EeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEeec
Q 007672 56 PGNRMLGWRPFVDGKFGPYVW--KTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICVPL 131 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~~--~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~v~i 131 (594)
++.+|++.. ..|.||.+|- +|...+...+.... -...++.++|++....+-+...- ..+++.+..|+..+..
T Consensus 261 ~~d~a~ily--TSGTTG~PKgV~~sh~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~ 336 (663)
T 1ry2_A 261 SEDPLFLLY--TSGSTGAPKGVQHSTAGYLLGALLTM--RYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVF 336 (663)
T ss_dssp TTSCCEEEE--ECCSSSSCEEEEECSHHHHHHHHHHH--HHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEE
T ss_pred CCCceEEEe--ccCCCCCCceEEEchhHHHHHHHHHH--HHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEE
Confidence 566666554 1577888774 45555543332211 12358899999888777664332 3457888999988877
Q ss_pred CCC---CChhHHHHHHhhcCceEEEEcchhHHHHhcccc-----cccccccEEEEecC
Q 007672 132 YDT---LGPGAVNFILDHAEIDFVFVQDKKVKELLSPDC-----RSAQRLRVMVCFTS 181 (594)
Q Consensus 132 ~~~---~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~ 181 (594)
+.. .+++.+..++++.+++++++.......+.+... ..+..++.++..+.
T Consensus 337 ~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe 394 (663)
T 1ry2_A 337 EGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGE 394 (663)
T ss_dssp CSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSS
T ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcC
Confidence 532 367889999999999999999887776654322 12345666666544
No 66
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=65.75 E-value=41 Score=34.59 Aligned_cols=103 Identities=10% Similarity=-0.095 Sum_probs=73.6
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHhcCCEEee
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVP 130 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~--~~~~~~A~~~~G~~~v~ 130 (594)
.|+.+|++.. ..|.+|.+| .+|...+...+..+...+ ++.++|+++..+|..-. ++..+++.+..|+..+.
T Consensus 153 ~~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVY--TSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEe--CCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 4566766654 157788776 678888888877766554 78899998887775432 23457888899998877
Q ss_pred cCCCCChhHHHHHHhhcCceEEEEcchhHHHHhc
Q 007672 131 LYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (594)
Q Consensus 131 i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (594)
.. ...++.+...+ +.++++++........+..
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 45677777777 6789999888877665543
No 67
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=64.37 E-value=41 Score=34.85 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=76.7
Q ss_pred CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEe
Q 007672 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (594)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~ 297 (594)
.++.+|++.... | -.+|.+.+...+..+...+.. .++.++|++...++-.. -.....+.++..|+..+.+
T Consensus 35 ~p~~~a~~~~~~---~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLINGAN---G----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEETTT---C----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEECCC---C----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 467777764322 2 368999999999888887743 37889999998887652 2234567788899998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHHHHH
Q 007672 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (594)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (594)
.. ....+...++..++.+++..+.....+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 66 78899999999999999998877766544
No 68
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=62.68 E-value=66 Score=33.38 Aligned_cols=107 Identities=9% Similarity=-0.051 Sum_probs=78.3
Q ss_pred CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEe
Q 007672 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (594)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~ 297 (594)
.++.+|++....+..+ -..-.+|.+.+...+..+...+.. .++.++|++...++-.. -....++.++..|+..+.+
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISR--KGVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEcc
Confidence 3667777765422111 112468999999999888887743 37889999998887652 2233567788899998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHHHHH
Q 007672 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (594)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (594)
.. ....+...++..++..++..+.....+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 76 78899999999999999999887766543
No 69
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=61.76 E-value=24 Score=36.54 Aligned_cols=105 Identities=9% Similarity=-0.071 Sum_probs=69.7
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHH-HHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH--HHHHHHHhcCCEEe
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEV-YEEVLQIVSALRASGAEPGCRVGIYGANCPQWV--EAMEACNALSLICV 129 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el-~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~--~~~~A~~~~G~~~v 129 (594)
.|+.+|++.. ..|.+|.++ .+|...+ ....... ....++.++|++...+|-.-.+- ..++..+..|+..+
T Consensus 181 ~~~d~a~i~~--TSGTTG~PKgv~~sh~~l~~~~~~~~---~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v 255 (529)
T 2v7b_A 181 GCDDIAFWLY--SSGSTGKPKGTVHTHANLYWTAELYA---KPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAI 255 (529)
T ss_dssp CTTSEEEEEE--C-----CCCEEEEEHHHHHHHHHHTC---CCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEE
T ss_pred CCCCeEEEEE--CCCCCCCCceEEEEhhHHHHHHHHHh---hhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEE
Confidence 4567776654 146677665 5677776 3222111 11237889999888887765443 34567788999988
Q ss_pred ecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhc
Q 007672 130 PLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLS 164 (594)
Q Consensus 130 ~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~ 164 (594)
.+++..+++.+...+.+.++++++........+..
T Consensus 256 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (529)
T 2v7b_A 256 LMAERPTADAIFARLVEHRPTVFYGVPTLYANMLV 290 (529)
T ss_dssp CCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHT
T ss_pred EecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHh
Confidence 77667788999999999999999998887766544
No 70
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=60.98 E-value=16 Score=43.03 Aligned_cols=122 Identities=9% Similarity=-0.051 Sum_probs=84.5
Q ss_pred CCCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhcCCEEeec
Q 007672 55 YPGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWV-EAMEACNALSLICVPL 131 (594)
Q Consensus 55 ~pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~-~~~~A~~~~G~~~v~i 131 (594)
.|+.+|++.. ..|.||.+| .+|...+.+. .......++.++|+++...+-+.+.. .-+++.+..|+..+..
T Consensus 605 ~~~~~ayiiy--TSGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMY--TSGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEE--ECCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEe--CCCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 4677776655 257788776 5677776532 11222347889999988888776553 3467888899988877
Q ss_pred CC--CCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCC
Q 007672 132 YD--TLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (594)
Q Consensus 132 ~~--~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (594)
++ ..+++.+...+.+.++++++........+..........++.+++-+..
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 65 3578899999999999999998887766644333334567777766553
No 71
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=60.18 E-value=35 Score=35.66 Aligned_cols=103 Identities=14% Similarity=-0.034 Sum_probs=72.7
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh--HHHHHHHHHhcCCEEeec
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ--WVEAMEACNALSLICVPL 131 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~--~~~~~~A~~~~G~~~v~i 131 (594)
|+.+|++.. ..|.+|.+| .+|...+...+..+... ..++.++|+++..+|-+-. +...+++.+..|+..+.+
T Consensus 175 ~~d~a~i~~--TSGTTG~PKgV~~sh~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~ 250 (576)
T 3gqw_A 175 PNDIAYLQY--TSGSTRFPRGVIITHREVMANLRAISHD--GIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYL 250 (576)
T ss_dssp TTSEEEEEC--TTSCSSSCCCEEEEHHHHHHHHHHHHHT--TSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEEC
T ss_pred CCCeEEEEe--CCCCCCCCceEEeeHHHHHHHHHHhhhc--ccCCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEc
Confidence 577777665 246677654 77888887666554332 1478999999888877644 344567788888887776
Q ss_pred CC---CCChhHHHHHHhhcCceEEEEcchhHHHH
Q 007672 132 YD---TLGPGAVNFILDHAEIDFVFVQDKKVKEL 162 (594)
Q Consensus 132 ~~---~~~~~~l~~~l~~~~~~~ii~~~~~~~~~ 162 (594)
.+ ...+..+...+++.++++++........+
T Consensus 251 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l 284 (576)
T 3gqw_A 251 RTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELC 284 (576)
T ss_dssp CHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred chhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHH
Confidence 54 13567888999999999999887665443
No 72
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=55.61 E-value=45 Score=32.24 Aligned_cols=67 Identities=7% Similarity=-0.017 Sum_probs=48.5
Q ss_pred HHHHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 91 SALRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 91 ~~L~~~G-i~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
..+.+.| +++|+.|.+....+-.-..+.++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 60 ~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 60 DKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3344556 488988766666677777778888888997776655544555567788999999999764
No 73
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=54.54 E-value=88 Score=31.54 Aligned_cols=107 Identities=12% Similarity=-0.000 Sum_probs=77.0
Q ss_pred CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEe
Q 007672 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (594)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~ 297 (594)
.++.+|++.........-....+|.+.+...+..+...+... +. ++|++...++-.. -.....+.++..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-e~~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQGL-EYVVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCcH-HHHHHHHHHHHhCcEEEee
Confidence 467788876653221122346899999999999998887543 43 7899888777552 2233467778899988877
Q ss_pred cC-----ChHHHHHHHhhhcCeEEEechHHHHHHHH
Q 007672 298 HG-----DLNALRDDLMELKPTLLAGVPRVFEKIHE 328 (594)
Q Consensus 298 ~~-----~~~~~~~~i~~~~~t~l~~~P~~~~~l~~ 328 (594)
.. ...++...++..++.+++..+.....+..
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 43 46788999999999999999887766543
No 74
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=53.89 E-value=89 Score=32.01 Aligned_cols=123 Identities=7% Similarity=-0.124 Sum_probs=77.4
Q ss_pred CCCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEEeecC
Q 007672 56 PGNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW-VEAMEACNALSLICVPLY 132 (594)
Q Consensus 56 pd~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~-~~~~~A~~~~G~~~v~i~ 132 (594)
++.+|++.. ..|.+|.++ .+|...+...+..+.... ..++..+++++...+-+... +..+++++..|+..+.++
T Consensus 144 ~~d~a~i~~--TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 220 (521)
T 3l8c_A 144 GDDNYYIIF--TSGTTGQPKGVQISHDNLLSFTNWMIEDA-AFDVPKQPQMLAQPPYSFDLSVMYWAPTLALGGTLFALP 220 (521)
T ss_dssp TTSEEEEEE--CCC---CCCEEEEEHHHHHHHHHHHHHCT-TTCCCSSCEEECCSCTTSGGGHHHHHHHHHTTCEEEECC
T ss_pred CCCcEEEEE--cCCCCCCCCEEEEehHHHHHHHHHHhhcc-ccCCCCCCeEEecCCccHHHHHHHHHHHHhcCCEEEEcC
Confidence 466666655 146677654 678888876555443221 14677888888777665433 445677888898887775
Q ss_pred CC--CChhHHHHHHhhcCceEEEEcchhHHHHhccc---ccccccccEEEEecC
Q 007672 133 DT--LGPGAVNFILDHAEIDFVFVQDKKVKELLSPD---CRSAQRLRVMVCFTS 181 (594)
Q Consensus 133 ~~--~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~---~~~~~~~~~v~~~~~ 181 (594)
.. .....+...+.+.+++++.........+.... ......++.++..+.
T Consensus 221 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~ 274 (521)
T 3l8c_A 221 KELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGE 274 (521)
T ss_dssp GGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred HHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecc
Confidence 43 36778899999999999998887665543222 123345666655443
No 75
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=53.38 E-value=76 Score=33.08 Aligned_cols=96 Identities=8% Similarity=-0.019 Sum_probs=71.9
Q ss_pred CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEe
Q 007672 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (594)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~ 297 (594)
.++.+|++.. .-.+|.+.+...+..+...+.. .++.++|++...++-.. -.....+.++..|+..+.+
T Consensus 52 ~p~~~Al~~~---------~~~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVCE---------NEQLTYHELNVKANQLARIFIE--KGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEET---------TEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEeC---------CceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEe
Confidence 3566777631 1368999999988888776643 37889999988887652 2233467778899998887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHH
Q 007672 298 HG--DLNALRDDLMELKPTLLAGVPRVFEK 325 (594)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~ 325 (594)
.. ....+...++..++.+++..+.....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 76 78889999999999999998765443
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=50.59 E-value=86 Score=32.54 Aligned_cols=123 Identities=6% Similarity=-0.177 Sum_probs=79.1
Q ss_pred CCcceEeecccCCCCCCcE--EEeHHHHHHHHHHHHHHHHH-----cCCCCCCEEEEEeCCchhH-HHHHHHHHhcCCEE
Q 007672 57 GNRMLGWRPFVDGKFGPYV--WKTYKEVYEEVLQIVSALRA-----SGAEPGCRVGIYGANCPQW-VEAMEACNALSLIC 128 (594)
Q Consensus 57 d~~a~~~~~~~d~~~~~~~--~~Ty~el~~~~~~la~~L~~-----~Gi~~gd~V~i~~~n~~~~-~~~~~A~~~~G~~~ 128 (594)
+.+|++.. ..|.+|.+| .+|...+...+..++..+.. ..+...+++....+.+.+. +..++.++..|+..
T Consensus 175 ~~~a~i~~--TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~ 252 (562)
T 3ite_A 175 NLDAYLLY--TSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCA 252 (562)
T ss_dssp TSEEEEEE--ECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEE
T ss_pred CCcEEEEE--CCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEE
Confidence 34454443 157788776 57899998888887776542 3567778887777766543 34467778889887
Q ss_pred eecCCCCChhHHHHHHhhcCceEEEEcchhHHHHhcccccccccccEEEEecCC
Q 007672 129 VPLYDTLGPGAVNFILDHAEIDFVFVQDKKVKELLSPDCRSAQRLRVMVCFTSL 182 (594)
Q Consensus 129 v~i~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (594)
+........+.+...+++.++++++........... .......++.+++-+..
T Consensus 253 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~-~~~~~~~lr~~~~gG~~ 305 (562)
T 3ite_A 253 VTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL-VPEDAPHLVYLGVGGEK 305 (562)
T ss_dssp EECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC-CGGGSTTCCEEEEESSC
T ss_pred EecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc-CccccCceEEEEEecCC
Confidence 765443345677889999999999988876654422 22344566766665543
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=47.81 E-value=81 Score=28.17 Aligned_cols=53 Identities=6% Similarity=-0.157 Sum_probs=37.6
Q ss_pred CcEEEEecChh-HHHHHHHHH-HhhhcCcEEEEecC--ChHHHHHHHhhhcCeEEEe
Q 007672 266 DDVYLSFLPLA-HILDRVIEE-YFFRRGASVGYYHG--DLNALRDDLMELKPTLLAG 318 (594)
Q Consensus 266 ~~~~~~~~pl~-~~~~~~~~l-~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l~~ 318 (594)
+.+++...+-. |..|..++- ..-..|..++.... .++.+.+.+++++++.+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 34445444443 777776543 44567888877654 8999999999999998777
No 78
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=43.33 E-value=55 Score=36.97 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=75.5
Q ss_pred CCCCeEEEEecCCCCCCCceEeeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEe
Q 007672 218 QPFNICTIMYTSGTSGDPKGVVLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYY 297 (594)
Q Consensus 218 ~~~~~a~i~~TSGTTG~pK~V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~ 297 (594)
.++.+|++...+ | -.+|.+.+...+..+...+.. .++.++|++...++-.. -.....+.++..|+..+.+
T Consensus 74 ~pd~~Al~~~~~---~----~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl 143 (979)
T 3tsy_A 74 FATKPCLINGPT---G----HVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAA 143 (979)
T ss_dssp TTTSEEEEETTT---C----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEECCC---C----cEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEee
Confidence 467788765322 2 468999999998888887643 37889999998888662 2233567788899999887
Q ss_pred cC--ChHHHHHHHhhhcCeEEEechHHHHHH
Q 007672 298 HG--DLNALRDDLMELKPTLLAGVPRVFEKI 326 (594)
Q Consensus 298 ~~--~~~~~~~~i~~~~~t~l~~~P~~~~~l 326 (594)
.. .++.+...++..++.+++..+.....+
T Consensus 144 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 144 NPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp CTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred CCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 76 788999999999999999987765544
No 79
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=42.67 E-value=63 Score=33.08 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=67.3
Q ss_pred eeccHhHHHHHhhhhhhhccccCCCCCCcEEEEecChhHHHHHHHHHHhhhcCcEEEEecC--ChHHHHHHHhhhcCeEE
Q 007672 239 VLTHETIATFVSGVDLFLDQFEDKMTVDDVYLSFLPLAHILDRVIEEYFFRRGASVGYYHG--DLNALRDDLMELKPTLL 316 (594)
Q Consensus 239 ~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~l~~l~~G~~~~~~~~--~~~~~~~~i~~~~~t~l 316 (594)
.+|.+.+...+..+...+.. .++.++|++...++-.. -.....+.++..|+..+.++. ....+...++..++.++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVA--RGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred EEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEE
Confidence 58999999999888887643 37889999998887652 223356778889999888776 78899999999999999
Q ss_pred EechHHHHHH
Q 007672 317 AGVPRVFEKI 326 (594)
Q Consensus 317 ~~~P~~~~~l 326 (594)
+..+.....+
T Consensus 105 i~~~~~~~~~ 114 (503)
T 4fuq_A 105 VCDPSKRDGI 114 (503)
T ss_dssp EECGGGTTTT
T ss_pred EECchhhHHH
Confidence 9988765443
No 80
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=38.82 E-value=1.2e+02 Score=29.30 Aligned_cols=65 Identities=6% Similarity=-0.041 Sum_probs=50.2
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 93 L~~~G-i~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
+.+.| +++|.+..+....+-.-..+.++|.+.|..+..+=|...+..-...++..++++++++..
T Consensus 77 a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 77 AEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 34445 578877777777788888888999999997777666655666678899999999998753
No 81
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=38.21 E-value=1.2e+02 Score=29.05 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=52.4
Q ss_pred EeHHHHHHHHHHH---HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEE
Q 007672 77 KTYKEVYEEVLQI---VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (594)
Q Consensus 77 ~Ty~el~~~~~~l---a~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii 153 (594)
+++.+........ .+.|+..++++|++|+|...-+.-...++++....|+-++.++. ++++ ..+++..+++.++
T Consensus 137 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~i 213 (348)
T 4eez_A 137 LDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVTI 213 (348)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEEE
T ss_pred CCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEEE
Confidence 6776654433332 23355568999999999998778788888887777777666654 3444 4567788888877
Q ss_pred Ecc
Q 007672 154 VQD 156 (594)
Q Consensus 154 ~~~ 156 (594)
...
T Consensus 214 ~~~ 216 (348)
T 4eez_A 214 NSG 216 (348)
T ss_dssp EC-
T ss_pred eCC
Confidence 543
No 82
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=31.64 E-value=1.7e+02 Score=29.21 Aligned_cols=64 Identities=9% Similarity=0.012 Sum_probs=46.8
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcc
Q 007672 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (594)
Q Consensus 93 L~~~G-i~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (594)
..+.| +++|....|....+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 165 A~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 165 AEQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 34556 46776656666667777777888889999777665555555667788999999999974
No 83
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=31.58 E-value=1.3e+02 Score=27.92 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhH
Q 007672 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQW 114 (594)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~ 114 (594)
.++++..+..|+...+.+. |...-.+-..|..++.+.+.+.+.+|.+.|+ ...++.-|+...
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~ 80 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATA 80 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccH
Confidence 4566667788999888888 7666666678999999999999999998765 355555556554
No 84
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=31.21 E-value=1.9e+02 Score=27.45 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=44.0
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 93 L~~~G-i~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
+.+.| +++|....+....+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 34556 456654444455666666777778899997766655444445567888899999998854
No 85
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=29.22 E-value=2.3e+02 Score=26.69 Aligned_cols=66 Identities=12% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHcCC-CCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 91 SALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 91 ~~L~~~Gi-~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
..+.+.|. ++|+.|.. ...+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 56 ~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 56 QAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 33444553 66766554 55555556666777799997766655443444566788999999999863
No 86
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=28.03 E-value=1.5e+02 Score=27.93 Aligned_cols=73 Identities=7% Similarity=-0.016 Sum_probs=48.1
Q ss_pred EEeHHHHHHHHHHHH---HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEE
Q 007672 76 WKTYKEVYEEVLQIV---SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (594)
Q Consensus 76 ~~Ty~el~~~~~~la---~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i 152 (594)
.+++.+.......++ +.|...++++|++|+|...-..-.+++.+|-. .|+-++.+. +++++ ..+++.+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~---~~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNN-AGYVVDLVS---ASLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHH-HTCEEEEEC---SSCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCEEEEEE---ChhhH-HHHHHcCCCEE
Confidence 368887653333332 33434488999999999996677777777764 587666555 23333 34567899888
Q ss_pred E
Q 007672 153 F 153 (594)
Q Consensus 153 i 153 (594)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 8
No 87
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=28.00 E-value=2.4e+02 Score=26.44 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=42.9
Q ss_pred HHHHcCC-CCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 92 ALRASGA-EPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 92 ~L~~~Gi-~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
.+.+.|. ++|+.|.- ...+-.-..+.++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 55 ~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 55 AAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444553 66665544 55555566677777889997766544433444556778999999999864
No 88
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=27.96 E-value=1.3e+02 Score=29.17 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=48.9
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCC-CCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEE
Q 007672 77 KTYKEVYEEVLQ---IVSALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (594)
Q Consensus 77 ~Ty~el~~~~~~---la~~L~~~Gi~-~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i 152 (594)
+++.+....... ..+.|.+.+++ +|++|+|...-.+-..++.+|-. .|+.++.+.. +++++..+.++.+++.+
T Consensus 153 ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v 229 (357)
T 2cf5_A 153 MAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISS--SNKKREEALQDLGADDY 229 (357)
T ss_dssp CCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEES--STTHHHHHHTTSCCSCE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--ChHHHHHHHHHcCCcee
Confidence 677664322111 12345566888 99999999876677777777765 5776555544 34555555558888877
Q ss_pred EEcc
Q 007672 153 FVQD 156 (594)
Q Consensus 153 i~~~ 156 (594)
+...
T Consensus 230 i~~~ 233 (357)
T 2cf5_A 230 VIGS 233 (357)
T ss_dssp EETT
T ss_pred eccc
Confidence 6544
No 89
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=26.94 E-value=45 Score=31.02 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHHHHHHHHcCCCCCCEEEEEeCCc
Q 007672 87 LQIVSALRASGAEPGCRVGIYGANC 111 (594)
Q Consensus 87 ~~la~~L~~~Gi~~gd~V~i~~~n~ 111 (594)
..+...|+++|+++||.|.|++.-+
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl~ 42 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSLS 42 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECTG
T ss_pred HHHHHHHHHcCCCCCCEEEEEechH
Confidence 4567788889999999999998754
No 90
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=26.75 E-value=1.7e+02 Score=28.15 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=45.1
Q ss_pred HHHHH--cCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 91 SALRA--SGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 91 ~~L~~--~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
+.|.+ .++++|++|+|...-.+-..++.+|-...|+.++.++. +++++. .+++.+++.++...+
T Consensus 175 ~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~~~ 240 (359)
T 1h2b_A 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK-LAERLGADHVVDARR 240 (359)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH-HHHHTTCSEEEETTS
T ss_pred HHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEeccc
Confidence 34555 68999999999998777888888877654876555544 344444 456889988876543
No 91
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=25.76 E-value=1.6e+02 Score=28.33 Aligned_cols=78 Identities=13% Similarity=-0.040 Sum_probs=49.1
Q ss_pred EeHHHHHHHH--HHHH-HHHHH-cCCCCCCEEEEEeC-CchhHHHHHHHHHhcCCE-EeecCCCCChhHHHHHHhhcCce
Q 007672 77 KTYKEVYEEV--LQIV-SALRA-SGAEPGCRVGIYGA-NCPQWVEAMEACNALSLI-CVPLYDTLGPGAVNFILDHAEID 150 (594)
Q Consensus 77 ~Ty~el~~~~--~~la-~~L~~-~Gi~~gd~V~i~~~-n~~~~~~~~~A~~~~G~~-~v~i~~~~~~~~l~~~l~~~~~~ 150 (594)
+++.+..... -..| ..|.+ .++++|++|+|... -.+-.+++.+|-. .|+. ++.++.....++....++..+++
T Consensus 140 l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lGa~ 218 (357)
T 1zsy_A 140 IPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLGAE 218 (357)
T ss_dssp SCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTTCS
T ss_pred CCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcCCc
Confidence 5676654321 1112 23444 37999999999997 5677777777764 5774 44444443344455677889998
Q ss_pred EEEEc
Q 007672 151 FVFVQ 155 (594)
Q Consensus 151 ~ii~~ 155 (594)
.++..
T Consensus 219 ~vi~~ 223 (357)
T 1zsy_A 219 HVITE 223 (357)
T ss_dssp EEEEH
T ss_pred EEEec
Confidence 88754
No 92
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=25.12 E-value=1.7e+02 Score=27.92 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=50.2
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEE
Q 007672 77 KTYKEVYEEVLQ---IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (594)
Q Consensus 77 ~Ty~el~~~~~~---la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii 153 (594)
+++.+....... ..+.|...++++|++|+|...-.+-..++.+|- ..|+-++.++. +++++. .+++.+++.++
T Consensus 140 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~i 215 (340)
T 3s2e_A 140 VGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVAV 215 (340)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEEE
T ss_pred CCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEEE
Confidence 677765432222 233455558999999999987667777777776 45886665544 345544 56788998877
Q ss_pred Ecc
Q 007672 154 VQD 156 (594)
Q Consensus 154 ~~~ 156 (594)
...
T Consensus 216 ~~~ 218 (340)
T 3s2e_A 216 NAR 218 (340)
T ss_dssp ETT
T ss_pred eCC
Confidence 654
No 93
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=25.10 E-value=1.6e+02 Score=21.10 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=35.0
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCE
Q 007672 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLI 127 (594)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~ 127 (594)
..+.+.+|.+. +.+.+..+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~~-------~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKER-------IATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHHH-------HHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHHH-------HHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 56777776543 44456788899999999998888888888888863
No 94
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=25.04 E-value=50 Score=30.81 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=19.9
Q ss_pred HHHHHHHHcCCCCCCEEEEEeCCc
Q 007672 88 QIVSALRASGAEPGCRVGIYGANC 111 (594)
Q Consensus 88 ~la~~L~~~Gi~~gd~V~i~~~n~ 111 (594)
.+.+.|+++|+++||+|.|++.-+
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsSl~ 40 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSSLS 40 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECSG
T ss_pred HHHHHHHHcCCCCCCEEEEEechH
Confidence 356778888999999999998654
No 95
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=24.97 E-value=51 Score=30.91 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=23.1
Q ss_pred EEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCc
Q 007672 75 VWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANC 111 (594)
Q Consensus 75 ~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~ 111 (594)
+.+|-.+| ...|+++|+++||.|.|++.-+
T Consensus 20 ~~~T~~~L-------~~~L~~LGI~~Gd~llVHsSL~ 49 (286)
T 3sma_A 20 ELVTRDRL-------ASDLAALGVRPGGVLLVHASLS 49 (286)
T ss_dssp CEECHHHH-------HHHHHHHTCCTTCEEEEEECST
T ss_pred CCcCHHHH-------HHHHHHcCCCCCCEEEEEechH
Confidence 45776655 5667888999999999997644
No 96
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=24.89 E-value=1.7e+02 Score=28.03 Aligned_cols=78 Identities=8% Similarity=-0.089 Sum_probs=51.3
Q ss_pred EeHHHHHHHHHH---HHHHHHHc--CCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceE
Q 007672 77 KTYKEVYEEVLQ---IVSALRAS--GAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDF 151 (594)
Q Consensus 77 ~Ty~el~~~~~~---la~~L~~~--Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 151 (594)
+++.+....... ..+.|.+. ++++|++|+|...-..-..++.+|-..-|+.++.++. +++++ .++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCE
Confidence 556555422221 23345553 7899999999988777888888887765666666644 34444 4667889998
Q ss_pred EEEcch
Q 007672 152 VFVQDK 157 (594)
Q Consensus 152 ii~~~~ 157 (594)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876554
No 97
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=24.39 E-value=2.5e+02 Score=26.94 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=41.3
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 93 L~~~G-i~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
+.+.| +++|+.|.-.. .+-.-..+.++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 69 a~~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 69 AIKDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 33445 36776655544 355555566677788986666544434445566788899999999863
No 98
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=24.28 E-value=1.7e+02 Score=27.68 Aligned_cols=75 Identities=11% Similarity=-0.021 Sum_probs=49.1
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEe-CCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEE
Q 007672 77 KTYKEVYEEVLQ---IVSALRASGAEPGCRVGIYG-ANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFV 152 (594)
Q Consensus 77 ~Ty~el~~~~~~---la~~L~~~Gi~~gd~V~i~~-~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~i 152 (594)
+++.+....... ..+.|...++++|++|+|.. .-.+-..++.+|- ..|+.++.+. +.++ ..++++.+++.+
T Consensus 126 ~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~~ 200 (321)
T 3tqh_A 126 LSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQC 200 (321)
T ss_dssp SCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSEE
T ss_pred CCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCEE
Confidence 677766543322 22344556899999999996 5667777777765 5688655543 3455 566788898877
Q ss_pred EEcc
Q 007672 153 FVQD 156 (594)
Q Consensus 153 i~~~ 156 (594)
+...
T Consensus 201 i~~~ 204 (321)
T 3tqh_A 201 INYH 204 (321)
T ss_dssp EETT
T ss_pred EeCC
Confidence 6543
No 99
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=24.19 E-value=1.9e+02 Score=27.69 Aligned_cols=73 Identities=14% Similarity=0.072 Sum_probs=47.9
Q ss_pred EeHHHHHHHHHH---HHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEE
Q 007672 77 KTYKEVYEEVLQ---IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVF 153 (594)
Q Consensus 77 ~Ty~el~~~~~~---la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii 153 (594)
+++.+....... ..+.|.+.++++|++|+|...-.+-..++.+|- ..|+-++.+... ++++. .+++.+++.++
T Consensus 150 ~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~~-~~~~lGa~~v~ 225 (348)
T 3two_A 150 APLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKKQ-DALSMGVKHFY 225 (348)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTHH-HHHHTTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHHH-HHHhcCCCeec
Confidence 677665422221 124456668999999999987667777777776 568866655543 33333 55678998888
No 100
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=23.89 E-value=2.4e+02 Score=24.65 Aligned_cols=56 Identities=9% Similarity=-0.083 Sum_probs=43.9
Q ss_pred CCEEEEEeCCc----hhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcc
Q 007672 101 GCRVGIYGANC----PQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (594)
Q Consensus 101 gd~V~i~~~n~----~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (594)
+.+|++.+..+ +...++...+-..|.-+..+....+.+++...+.+.++++|....
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~ 147 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSA 147 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEEC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 33666665442 555666666778899999999999999999999999999998765
No 101
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=23.61 E-value=2.2e+02 Score=27.49 Aligned_cols=63 Identities=24% Similarity=0.244 Sum_probs=43.8
Q ss_pred HHHHHcCCC-CCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcc
Q 007672 91 SALRASGAE-PGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (594)
Q Consensus 91 ~~L~~~Gi~-~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (594)
+.|.+.+++ +|++|+|...-.+-..++.+|- ..|+-++.+.. +++++..+.+..+++.++...
T Consensus 177 ~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 177 SPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 345566888 9999999987667777777765 46876555544 456666666688888766543
No 102
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=23.54 E-value=1.7e+02 Score=28.34 Aligned_cols=60 Identities=10% Similarity=-0.056 Sum_probs=38.5
Q ss_pred HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCC-----CChhHHHHHHhhcC--ceEEEE
Q 007672 92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDT-----LGPGAVNFILDHAE--IDFVFV 154 (594)
Q Consensus 92 ~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~--~~~ii~ 154 (594)
.|...++++||.|++..+....+. .++...|+.++.++.. .+.+.+...+..-+ .+.|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 344457899999988877665543 3456788877666432 36777887774333 566653
No 103
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=23.24 E-value=1.1e+02 Score=29.90 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=42.7
Q ss_pred CCCCCCCccccccccCCCCCCCCCCcCcHHHHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHH
Q 007672 16 DGKPSVGPVYRNLLASNGFPSVDSDLNTAWDIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRA 95 (594)
Q Consensus 16 ~~~~~~~~~~r~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~ 95 (594)
.+.|.+..-.|+..+...+|.. .+-.+...+.+.-+....++|++++ |+ |...+..++..|.+
T Consensus 17 ~~~~~~~~l~~~~~~~~~l~~~--y~fEi~kti~~I~~~~~krVaLQfP---dg------------Ll~~a~~Ia~~L~~ 79 (378)
T 3lzd_A 17 KAGSAAAVLEENLYFQGSFTML--HEIPKSEILKELKRIGAKRVLIQSP---EG------------LRREAEELAGFLEE 79 (378)
T ss_dssp ---------------------C--CSCCHHHHHHHHHHTTCCEEEEECC---GG------------GHHHHHHHHHHHHT
T ss_pred ccCcHHHhhhhcccCCccCCcc--ccccHHHHHHHHHhcCCCEEEEECC---HH------------HHHHHHHHHHHHhh
Confidence 3445666777777776666643 4456888888888888999999998 65 77888889999987
Q ss_pred cCCCCCCEEEEEeCCch
Q 007672 96 SGAEPGCRVGIYGANCP 112 (594)
Q Consensus 96 ~Gi~~gd~V~i~~~n~~ 112 (594)
.|..+.|+...+.
T Consensus 80 ----~~~e~~IlgDttY 92 (378)
T 3lzd_A 80 ----NNIEVFLHGEINY 92 (378)
T ss_dssp ----TTCEEEEECSCCC
T ss_pred ----cCceEEEEcCCcc
Confidence 4667888766553
No 104
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=22.90 E-value=3.4e+02 Score=25.26 Aligned_cols=65 Identities=8% Similarity=0.022 Sum_probs=42.0
Q ss_pred HHHHcC-CCCCC--EEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 92 ALRASG-AEPGC--RVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 92 ~L~~~G-i~~gd--~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
.+.+.| +++|+ .|.. ...+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 50 ~a~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 50 DAEERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHHHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334445 46666 4433 44455556666777899987666544433445566788899999998864
No 105
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}
Probab=22.65 E-value=3.3e+02 Score=25.79 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=43.4
Q ss_pred HHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcch
Q 007672 90 VSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQDK 157 (594)
Q Consensus 90 a~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~~ 157 (594)
...+...++++|++|+|...-+.-.+.+++|...-....+.++. ++++ ..++++.+++.++...+
T Consensus 150 ~~~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~--~~~k-~~~a~~lGa~~~i~~~~ 214 (346)
T 4a2c_A 150 LHAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI--SSEK-LALAKSFGAMQTFNSSE 214 (346)
T ss_dssp HHHHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES--CHHH-HHHHHHTTCSEEEETTT
T ss_pred HHHHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec--hHHH-HHHHHHcCCeEEEeCCC
Confidence 33445568999999999988667777776666543344444544 3444 45678899988876543
No 106
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=21.79 E-value=2.8e+02 Score=21.95 Aligned_cols=51 Identities=12% Similarity=0.003 Sum_probs=39.6
Q ss_pred HHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeec--CCCCChhH
Q 007672 89 IVSALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPL--YDTLGPGA 139 (594)
Q Consensus 89 la~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i--~~~~~~~~ 139 (594)
.+.+|.+.|+.++..+.|...+..+.+-++-=+++.|...+.+ -+..+...
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~ 98 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAA 98 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHH
Confidence 4677888899999988888888889998999999998865555 24455544
No 107
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=21.78 E-value=1.2e+02 Score=27.85 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=39.5
Q ss_pred HHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCC
Q 007672 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGA 98 (594)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi 98 (594)
.+++...+..|+...+.+. |.....+-..++.++.+.+.+.+..|.+.|+
T Consensus 14 tv~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~ 63 (255)
T 2jfz_A 14 SVLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEI 63 (255)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455666778999888887 6666555567999999999999999988765
No 108
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=20.92 E-value=2.3e+02 Score=27.39 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=41.5
Q ss_pred HHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcc
Q 007672 91 SALRASGAEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (594)
Q Consensus 91 ~~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (594)
+.|.+.++++|++|+|...-.+-..++.+|-. .|+-++.+.. +++++. .+++.+++.++...
T Consensus 185 ~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~Vi~~~~--~~~~~~-~a~~lGa~~vi~~~ 246 (369)
T 1uuf_A 185 SPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTT--SEAKRE-AAKALGADEVVNSR 246 (369)
T ss_dssp HHHHHTTCCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEES--SGGGHH-HHHHHTCSEEEETT
T ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeC--CHHHHH-HHHHcCCcEEeccc
Confidence 44555689999999999886677777777754 5876554443 344443 34567888776543
No 109
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=20.91 E-value=2.9e+02 Score=26.67 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=41.2
Q ss_pred HHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhcCC-EEeecCCCCChhHHHHHHhhcCceEEEE
Q 007672 92 ALRASGAEPGCRVGIYGANCPQWVEAMEACNALSL-ICVPLYDTLGPGAVNFILDHAEIDFVFV 154 (594)
Q Consensus 92 ~L~~~Gi~~gd~V~i~~~n~~~~~~~~~A~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~~ii~ 154 (594)
.|...++++|++|+|...-..-.+++.+|- ..|+ .++.++. ++++ ..+++..+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 355568999999999988666777777766 5787 6655544 3444 34667788887664
No 110
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=20.77 E-value=3.2e+02 Score=25.84 Aligned_cols=63 Identities=11% Similarity=0.053 Sum_probs=43.5
Q ss_pred HHHcC-CCCCCEEEEEeCCchhHHHHHHHHHhcCCEEeecCCCCChhHHHHHHhhcCceEEEEcc
Q 007672 93 LRASG-AEPGCRVGIYGANCPQWVEAMEACNALSLICVPLYDTLGPGAVNFILDHAEIDFVFVQD 156 (594)
Q Consensus 93 L~~~G-i~~gd~V~i~~~n~~~~~~~~~A~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ii~~~ 156 (594)
+.+.| +++++.|.-. ..+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 64 a~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 127 (325)
T 3dwg_A 64 AEADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAA 127 (325)
T ss_dssp HHHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECS
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 34455 4677766554 445556667777788898777665554455556788899999999985
No 111
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=20.34 E-value=3.6e+02 Score=24.62 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCCcceEeecccCCCCCCcEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchh
Q 007672 46 DIFSMSVQKYPGNRMLGWRPFVDGKFGPYVWKTYKEVYEEVLQIVSALRASGAEPGCRVGIYGANCPQ 113 (594)
Q Consensus 46 ~~l~~~a~~~pd~~a~~~~~~~d~~~~~~~~~Ty~el~~~~~~la~~L~~~Gi~~gd~V~i~~~n~~~ 113 (594)
.+++...+..|+...+.+. |...-.+-..++.++.+++.+.+..|.+.|+ | ..++.-|+..
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d-~iviaCNTas 77 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI---K-MLVIACNTAT 77 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC---S-EEEECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---C-EEEEeCchhh
Confidence 3556667788998888777 6655555567899999999999999987654 3 4444445544
No 112
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.24 E-value=3.3e+02 Score=27.04 Aligned_cols=62 Identities=11% Similarity=-0.061 Sum_probs=32.9
Q ss_pred EEEeCCchhHHH-HHHHHHhcCCEEeecCCCCChh--HHHHHHhhcCceEEEEcchhHHHHhccc
Q 007672 105 GIYGANCPQWVE-AMEACNALSLICVPLYDTLGPG--AVNFILDHAEIDFVFVQDKKVKELLSPD 166 (594)
Q Consensus 105 ~i~~~n~~~~~~-~~~A~~~~G~~~v~i~~~~~~~--~l~~~l~~~~~~~ii~~~~~~~~~~~~~ 166 (594)
+++..++.+.+. ++.++...|-.++..++.+..- .+...+...++++++++....+.+.+++
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai 164 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHAC 164 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhh
Confidence 455556655443 3344555565555445554321 2223666778888777765544444433
Done!