Your job contains 1 sequence.
>007673
MAQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVR
VCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNI
FIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG
MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV
MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ
AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS
TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMY
PPGPSGLGQQFLYGQAPPAIIPPQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMG
AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE
MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSLNENLVS
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 007673
(593 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 1519 4.3e-205 3
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 1582 1.1e-196 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 1449 5.9e-187 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 1240 1.2e-151 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 1163 8.2e-138 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 1162 1.1e-137 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 1162 1.1e-137 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 1162 1.1e-137 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 1162 1.1e-137 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 1161 1.3e-137 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 1161 1.3e-137 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 1161 2.2e-137 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 1161 2.2e-137 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 1159 4.5e-137 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 1159 4.5e-137 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 1159 4.5e-137 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 1159 4.5e-137 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 1159 4.5e-137 2
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 1155 5.8e-137 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 1155 1.2e-136 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 1152 2.5e-136 2
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 1154 4.0e-136 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 1146 1.4e-135 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 1146 1.7e-135 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 1134 2.3e-133 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 1110 1.2e-132 2
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 1118 8.7e-132 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 1129 3.7e-131 2
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 1112 3.7e-131 2
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 1098 7.7e-131 2
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 1117 4.2e-130 2
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 1100 6.9e-130 2
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 1116 2.3e-129 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 1111 3.8e-129 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 969 5.7e-129 3
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 1119 4.3e-128 2
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 1076 2.4e-127 2
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 1096 3.0e-127 2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 1047 3.1e-125 2
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 1093 3.9e-125 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 1026 5.1e-123 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 1090 5.8e-122 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 999 7.4e-122 2
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 1054 9.4e-122 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 1049 9.4e-122 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 1087 1.7e-120 2
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 1045 5.9e-120 2
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 721 6.5e-120 3
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 977 8.5e-119 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 974 7.6e-118 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 1062 1.8e-116 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 948 8.7e-115 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 889 1.7e-105 2
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 858 1.7e-105 2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 961 1.1e-96 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 950 1.6e-95 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 943 8.7e-95 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 943 8.7e-95 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 908 4.5e-91 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 746 3.4e-90 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 746 3.4e-90 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 876 1.1e-87 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 875 1.4e-87 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 866 1.3e-86 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 863 2.6e-86 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 862 3.3e-86 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 802 9.4e-82 2
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 602 3.2e-79 2
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 704 1.1e-74 2
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 698 8.0e-69 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 697 1.0e-68 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 428 2.9e-60 2
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 600 1.9e-58 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 560 3.4e-54 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 552 2.4e-53 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 552 2.4e-53 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 551 3.0e-53 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 550 3.8e-53 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 475 3.4e-45 1
UNIPROTKB|F1M0P4 - symbol:F1M0P4 "Uncharacterized protein... 311 1.0e-44 2
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 451 1.2e-42 1
UNIPROTKB|B1ANR1 - symbol:PABPC4 "Polyadenylate-binding p... 445 5.2e-42 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 438 2.8e-41 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 396 9.4e-40 2
UNIPROTKB|H0YBN4 - symbol:PABPC1 "Polyadenylate-binding p... 267 2.3e-37 2
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 392 2.1e-36 1
UNIPROTKB|E5RGH3 - symbol:PABPC1 "Polyadenylate-binding p... 388 6.3e-36 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 285 1.4e-35 2
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 285 1.4e-35 2
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 284 1.8e-35 2
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 284 1.8e-35 2
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 284 1.8e-35 2
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 284 1.8e-35 2
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 279 2.4e-35 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 279 2.4e-35 2
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 279 2.4e-35 2
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 279 2.4e-35 2
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 383 2.5e-35 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 277 5.1e-35 2
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 277 5.1e-35 2
WARNING: Descriptions of 1478 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 1519 (539.8 bits), Expect = 4.3e-205, Sum P(3) = 4.3e-205
Identities = 292/419 (69%), Positives = 347/419 (82%)
Query: 17 GVAAGASGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGY 75
G AA A+G Q TTSLYVGDLD VTDSQL++ F+Q GQV+SVRVCRD++TRRSLGYGY
Sbjct: 31 GAAAAAAGAAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGY 90
Query: 76 VNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALH 135
VNYA P DA+RAL+ LNF LN ++IR+MYS RDPS+RKSG GNIFIKNLDKSIDHKALH
Sbjct: 91 VNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALH 150
Query: 136 DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
+TFS+FG ILSCK+A D SGQSKG+GFVQ++ E+AQ AIDKLNGML+NDKQV+VG F+
Sbjct: 151 ETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVH 210
Query: 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
K +R+ K KF NV+VKNL ES +DE+L K+FGE+G TS V+MRDG+GKSK FGFVN
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVN 270
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 315
FEN+DDAA+AV+ALNGK FDD+EW+VGKAQKKSERE ELK +FEQ++KE DK QG NLY
Sbjct: 271 FENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLY 330
Query: 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 375
+KNL +S+ D+KL+E F+ FGTITSCKVMRDPSG+S+GSGFVAFSTPEEA+RA+ EMNGK
Sbjct: 331 VKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGK 390
Query: 376 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYG 434
MIV+KPLYVA+AQRKE+R+ARLQAQFSQMRPV M +GQQ YG
Sbjct: 391 MIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYG 449
Score = 467 (169.5 bits), Expect = 4.3e-205, Sum P(3) = 4.3e-205
Identities = 100/147 (68%), Positives = 116/147 (78%)
Query: 448 RGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDM--GAGIPRRDASVGQPMPITALSTALAN 505
RG YRYP R++ P +ML VP D+ G G+ RD+ QP+PI AL+T LAN
Sbjct: 527 RGRMYRYPQ-RDVNTMPGP--TQNMLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLAN 583
Query: 506 ASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 565
A+PEQQRT+LGE+LYPLVEQLE ++AAKVTGMLLEMDQTEVLHLLESPEALKAKV EAM+
Sbjct: 584 AAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTEAMD 643
Query: 566 VLRSVAQQQANNPADQLASLSLNENLV 592
VLRSVAQQQA ADQLASLSL +N+V
Sbjct: 644 VLRSVAQQQAGGAADQLASLSLGDNIV 670
Score = 37 (18.1 bits), Expect = 4.3e-205, Sum P(3) = 4.3e-205
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 5 QVQHQAQMSGPNGVAA-GAS 23
Q+QHQ Q + GVA GA+
Sbjct: 3 QIQHQGQNAN-GGVAVPGAA 21
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 1582 (562.0 bits), Expect = 1.1e-196, Sum P(2) = 1.1e-196
Identities = 305/440 (69%), Positives = 360/440 (81%)
Query: 1 MAQIQVQHQ------AQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVG 54
MAQ+Q+Q Q A ++ + GA+ QF TSLYVGDLDFNVTDSQL+D F Q+G
Sbjct: 1 MAQVQLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMG 60
Query: 55 QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRK 114
V++VRVCRDL TRRSLGYGYVN+ NP DAARA+ LN+ PL K IR+MYSHRDPS+R+
Sbjct: 61 TVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRR 120
Query: 115 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174
SG GNIFIKNLD+SIDHKALHDTFSSFGNI+SCK+A D SGQSKG+GFVQ+ N+ESAQ A
Sbjct: 121 SGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKA 180
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I+KLNGML+NDKQV+VG FLR+QER++ A KTKF NV+VKNL ESTTD+DLK FGEYG
Sbjct: 181 IEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 235 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 294
ITSAVVM+DG+GKSK FGFVNFENADDAA+AVE+LNG KFDD+EWYVG+AQKKSERE EL
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETEL 300
Query: 295 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 354
+ ++EQ +KE DKFQ NLY+KNL SI DEKLKE+FS FGT+TS KVMRDP+G SKGS
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS 360
Query: 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXX 414
GFVAF+TPEEA+ A+++++GKMI SKPLYVA+AQRKE+RR RLQAQFSQ+RPVAM
Sbjct: 361 GFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVG 420
Query: 415 XXXXXXXXXXXXLGQQFLYG 434
+GQQ YG
Sbjct: 421 PRMPVYPPGGPGIGQQMFYG 440
Score = 345 (126.5 bits), Expect = 1.1e-196, Sum P(2) = 1.1e-196
Identities = 77/121 (63%), Positives = 91/121 (75%)
Query: 470 GSMLPVPVDMGAG--IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLE 527
G M P G +P D P+ I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E
Sbjct: 512 GRMFRYPQGRGGSGDVPPYDMGNNMPLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVE 571
Query: 528 RDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 587
++AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM+VLRSVA A +QLASL+L
Sbjct: 572 AESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVA---AGGATEQLASLNL 628
Query: 588 N 588
+
Sbjct: 629 S 629
Score = 54 (24.1 bits), Expect = 6.4e-166, Sum P(2) = 6.4e-166
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 448 RGHAYRYPLGRNMQ-DFP-FDMGAGSMLPVPVDMGA 481
RG +RYP GR D P +DMG +P+ +GA
Sbjct: 511 RGRMFRYPQGRGGSGDVPPYDMGNN----MPLTIGA 542
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 1449 (515.1 bits), Expect = 5.9e-187, Sum P(2) = 5.9e-187
Identities = 280/419 (66%), Positives = 332/419 (79%)
Query: 17 GVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGY 75
GV G G SLYVGDLDFNVTDSQLYD F++V QV+SVRVCRD +T SLGYGY
Sbjct: 32 GVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGY 91
Query: 76 VNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALH 135
VNY+N DA +A+ LN++ LN K IRI YS RD S R+SG GN+F+KNLDKS+D+K LH
Sbjct: 92 VNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLH 151
Query: 136 DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
+ FS G I+SCK+ATD GQS+G+GFVQF+ ++SA+NAI+KLNG ++NDKQ+FVG FLR
Sbjct: 152 EAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLR 211
Query: 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
K+ERE+ A K KF NV+VKNL E+TTD++LK FG+YG+I+SAVVMRDGDGKS+CFGFVN
Sbjct: 212 KEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVN 271
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 315
FEN +DAA+AVEALNGKKFDD+EWYVGKAQKKSERE EL ++EQ + +KF GLNLY
Sbjct: 272 FENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLY 331
Query: 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 375
+KNL D++ DEKL+ELF+EFGTITSCKVMRDPSG SKGSGFVAFS EASR L EMNGK
Sbjct: 332 VKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGK 391
Query: 376 MIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYG 434
M+ KPLYVA+AQRKEERRA+LQAQFSQMRP A LGQQ YG
Sbjct: 392 MVGGKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYG 449
Score = 386 (140.9 bits), Expect = 5.9e-187, Sum P(2) = 5.9e-187
Identities = 90/153 (58%), Positives = 109/153 (71%)
Query: 448 RGHAYRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANA 506
RG YRYP G RNM D P G M+PV DM +P QPM L+T+LANA
Sbjct: 519 RGRGYRYPSGGRNMPDGPMP---GGMVPVAYDMNV-MP-----YSQPMSAGQLATSLANA 569
Query: 507 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 566
+P QQRTLLGESLYPLV+Q+E + AAKVTGMLLEMDQTEVLHLLESPEAL AKV+EA++V
Sbjct: 570 TPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDV 629
Query: 567 LRSVAQ--------QQANNPADQLASLSLNENL 591
LR+V Q ++ +P+D LASLS+N++L
Sbjct: 630 LRNVNQPSSQGSEGNKSGSPSDLLASLSINDHL 662
Score = 134 (52.2 bits), Expect = 8.9e-44, Sum P(2) = 8.9e-44
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ + + + ++S + GN+F +LYV +LD VTD +L +LF++ G + S +V
Sbjct: 300 AQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKV 359
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108
RD S S G G+V ++ ++A+R L+ +N + K + + + R
Sbjct: 360 MRDPSGT-SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQR 405
Score = 37 (18.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 177 KLNGMLINDKQVFVGHFLRKQE 198
K+ GML+ Q V H L E
Sbjct: 596 KVTGMLLEMDQTEVLHLLESPE 617
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 1240 (441.6 bits), Expect = 1.2e-151, Sum P(2) = 1.2e-151
Identities = 248/406 (61%), Positives = 308/406 (75%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ VQ + P+ V + +SLY GDLD VT++ L+DLF V V+SVRV
Sbjct: 23 AQTSVQVPVSIPLPSPVVVADQTHP--NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRV 80
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
CRD RRSLGY Y+N++NP DA RA++ LN+TPL ++ IRIM S+RDPS R SG GNIF
Sbjct: 81 CRD-QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIF 139
Query: 122 IKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM 181
IKNLD SID+KAL +TFSSFG ILSCK+A D +G+SKG+GFVQFE +ESAQ AIDKLNGM
Sbjct: 140 IKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGM 199
Query: 182 LINDKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 239
L+NDKQVFVGHF+R+QER + +F NV+VKNL + +++L+K FG++G I+SAV
Sbjct: 200 LMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAV 259
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 299
VMRD G S+CFGFVNFE + AA AVE +NG D YVG+AQKKSERE+EL+ +FE
Sbjct: 260 VMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFE 319
Query: 300 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 359
Q +K QG NLY+KNL DS+DDEKLKE+FSE+G +TS KVM +P G+S+G GFVA+
Sbjct: 320 QERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAY 379
Query: 360 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
S PEEA RAL+EMNGKMI KPLY+A+AQRKE+RRA LQA FSQ+R
Sbjct: 380 SNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQIR 425
Score = 261 (96.9 bits), Expect = 1.2e-151, Sum P(2) = 1.2e-151
Identities = 58/113 (51%), Positives = 80/113 (70%)
Query: 457 GRNMQDFPFDMGA-GSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLL 515
GRN D G ++P+P+D + I + A + +PI+ L+++LA+ASP + +L
Sbjct: 536 GRNGMDSSVPQGILPPIIPLPID-ASSISHQKAPL---LPISKLTSSLASASPADRTRML 591
Query: 516 GESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLR 568
GE LYPLVE+ E AKVTGMLLEMDQ E+LHL+ESPEALK+KV+EA++VLR
Sbjct: 592 GEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSEALDVLR 644
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 1163 (414.5 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 226/384 (58%), Positives = 294/384 (76%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 494 (179.0 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 111/288 (38%), Positives = 173/288 (60%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 8.2e-138, Sum P(2) = 8.2e-138
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 626
Query: 583 AS 584
A+
Sbjct: 627 AA 628
Score = 199 (75.1 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 115 (45.5 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 326 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRV 386
Score = 114 (45.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 1162 (414.1 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 226/384 (58%), Positives = 294/384 (76%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN E DE+LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 496 (179.7 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 111/288 (38%), Positives = 173/288 (60%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 523 PYKYASSIRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 580
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 581 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 640
Query: 583 AS 584
A+
Sbjct: 641 AA 642
Score = 199 (75.1 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 115 (45.5 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 326 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRV 386
Score = 114 (45.2 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 1162 (414.1 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 226/384 (58%), Positives = 293/384 (76%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 494 (179.0 bits), Expect = 3.3e-67, Sum P(2) = 3.3e-67
Identities = 111/288 (38%), Positives = 173/288 (60%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 626
Query: 583 AS 584
A+
Sbjct: 627 AA 628
Score = 199 (75.1 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 115 (45.5 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 326 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRV 386
Score = 114 (45.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 1162 (414.1 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 226/384 (58%), Positives = 294/384 (76%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 490 (177.5 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 110/288 (38%), Positives = 173/288 (60%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 493 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 550
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 551 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 610
Query: 583 AS 584
A+
Sbjct: 611 AA 612
Score = 199 (75.1 bits), Expect = 2.3e-29, Sum P(2) = 2.3e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 115 (45.5 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 326 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRV 386
Score = 114 (45.2 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 1162 (414.1 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 226/384 (58%), Positives = 294/384 (76%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 490 (177.5 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
Identities = 110/288 (38%), Positives = 173/288 (60%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.1e-137, Sum P(2) = 1.1e-137
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 522 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 579
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 580 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 639
Query: 583 AS 584
A+
Sbjct: 640 AA 641
Score = 199 (75.1 bits), Expect = 2.8e-29, Sum P(2) = 2.8e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 115 (45.5 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 326 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRV 386
Score = 114 (45.2 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 1161 (413.8 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 225/384 (58%), Positives = 294/384 (76%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 479 (173.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 108/288 (37%), Positives = 172/288 (59%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
++ E+A++A+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 626
Query: 583 AS 584
A+
Sbjct: 627 AA 628
Score = 200 (75.5 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 115 (45.5 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 326 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRV 386
Score = 114 (45.2 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 1161 (413.8 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 225/384 (58%), Positives = 294/384 (76%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 479 (173.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 108/288 (37%), Positives = 172/288 (59%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
++ E+A++A+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 284
Score = 207 (77.9 bits), Expect = 1.3e-137, Sum P(2) = 1.3e-137
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 538 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 595
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 596 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 655
Query: 583 AS 584
A+
Sbjct: 656 AA 657
Score = 200 (75.5 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 115 (45.5 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 326 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRV 386
Score = 114 (45.2 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 1161 (413.8 bits), Expect = 2.2e-137, Sum P(2) = 2.2e-137
Identities = 223/383 (58%), Positives = 294/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 485 (175.8 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 112/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 448 (162.8 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 108/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L + F FG L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 205 (77.2 bits), Expect = 2.2e-137, Sum P(2) = 2.2e-137
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 597
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 100 (40.3 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 1161 (413.8 bits), Expect = 2.2e-137, Sum P(2) = 2.2e-137
Identities = 223/383 (58%), Positives = 294/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 485 (175.8 bits), Expect = 4.8e-66, Sum P(2) = 4.8e-66
Identities = 112/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LKELF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 448 (162.8 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 108/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L + F FG L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 205 (77.2 bits), Expect = 2.2e-137, Sum P(2) = 2.2e-137
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 597
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 100 (40.3 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 1159 (413.0 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 223/383 (58%), Positives = 293/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 452 (164.2 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 109/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L D F FG L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 3.6e-30, Sum P(2) = 3.6e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 100 (40.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 1159 (413.0 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 223/383 (58%), Positives = 293/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 452 (164.2 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 109/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L D F FG L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 3.6e-30, Sum P(2) = 3.6e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 100 (40.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 1159 (413.0 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 223/383 (58%), Positives = 293/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 452 (164.2 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 109/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L D F FG L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 3.6e-30, Sum P(2) = 3.6e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 100 (40.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 1159 (413.0 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 223/383 (58%), Positives = 293/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 452 (164.2 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 109/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L D F FG L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 3.6e-30, Sum P(2) = 3.6e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 113 (44.8 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 100 (40.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 1159 (413.0 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 223/383 (58%), Positives = 293/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 452 (164.2 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
Identities = 109/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L D F FG L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 552 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 608
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 609 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 637
Score = 113 (44.8 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 100 (40.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 1155 (411.6 bits), Expect = 5.8e-137, Sum P(2) = 5.8e-137
Identities = 226/384 (58%), Positives = 293/384 (76%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+G+ + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAGSSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN + DE LK++F +YG S VM D GKSK FGFV+FE
Sbjct: 182 ELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NGK + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 242 EDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAHLTNQYMQ 384
Score = 485 (175.8 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 110/288 (38%), Positives = 173/288 (60%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE D A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN GD +DDE+LKELFS++G S KVM DP+G SKG GFV
Sbjct: 187 ----AKEFT------NVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+F E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 237 SFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLK 284
Score = 207 (77.9 bits), Expect = 5.8e-137, Sum P(2) = 5.8e-137
Identities = 47/124 (37%), Positives = 76/124 (61%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 509 PYKYASSVRSPHPPVQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 566
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS-VAQQQANNPADQL 582
+ + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 567 QAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQAHQAKKEAAQKVGVV 626
Query: 583 ASLS 586
A+ S
Sbjct: 627 AATS 630
Score = 198 (74.8 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 65/200 (32%), Positives = 102/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGAKAKEFTNV 193
Score = 115 (45.5 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 326 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRI 386
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 1155 (411.6 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 222/383 (57%), Positives = 292/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL + T++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 478 (173.3 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 111/298 (37%), Positives = 172/298 (57%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 452 (164.2 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 109/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L D F FG L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 210 (79.0 bits), Expect = 3.6e-30, Sum P(2) = 3.6e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 1.2e-136, Sum P(2) = 1.2e-136
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 541 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 597
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 598 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 626
Score = 109 (43.4 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 100 (40.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 1152 (410.6 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 221/383 (57%), Positives = 293/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK+IF +YG S VM D GKSK FGFV+FE +
Sbjct: 183 MGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA +AV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D +DDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L +Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTSQYMQ 384
Score = 474 (171.9 bits), Expect = 8.7e-65, Sum P(2) = 8.7e-65
Identities = 109/298 (36%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE E+ + KE N+YIKN G+ +DDEKLKE+F ++G S +VM D
Sbjct: 177 KEREAEMGAR----AKEFT------NVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A RA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMK 284
Score = 441 (160.3 bits), Expect = 3.0e-61, Sum P(2) = 3.0e-61
Identities = 106/289 (36%), Positives = 161/289 (55%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHR-DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
+LN + + + R N++IKN + +D + L + F +G LS
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALS 219
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 206
++ TD SG+SKGFGFV FE E AQ A+D++NG +N KQV+VG +K ER+T +K
Sbjct: 220 IRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQT-ELKR 278
Query: 207 KFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 253
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGF
Sbjct: 279 KFEQMKQDRMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGF 337
Query: 254 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
V F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQRM 386
Score = 204 (76.9 bits), Expect = 2.5e-136, Sum P(2) = 2.5e-136
Identities = 46/105 (43%), Positives = 72/105 (68%)
Query: 483 IPRRDASV---GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 539
+P + +V GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLL
Sbjct: 529 VPMQQPAVHVQGQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLL 585
Query: 540 EMDQTEVLHLLESPEALKAKVAEAMEVLRS-----VAQQQANNPA 579
E+D +E+LH+LESPE+L++KV EA+ VL++ AQ+ +PA
Sbjct: 586 EIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKSVPSPA 630
Score = 204 (76.9 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
Identities = 65/198 (32%), Positives = 101/198 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 390 KEERRARLQAQFSQMRPV 407
++ER A + A+ + V
Sbjct: 176 RKEREAEMGARAKEFTNV 193
Score = 110 (43.8 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 1154 (411.3 bits), Expect = 4.0e-136, Sum P(2) = 4.0e-136
Identities = 221/383 (57%), Positives = 292/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN + DE LK++FG+YG S VM D +GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ F FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 466 (169.1 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
Identities = 106/298 (35%), Positives = 174/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN GD ++DE+LKE+F ++G S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+G SKG GFV+F E+A +A+ EMNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMK 284
Score = 424 (154.3 bits), Expect = 1.3e-58, Sum P(2) = 1.3e-58
Identities = 105/290 (36%), Positives = 161/290 (55%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN ++ + L + F +G L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD +G+SKGFGFV FE E AQ A+D++NG +N K +FVG +K ER+T +K
Sbjct: 219 SVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 209 (78.6 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 66/198 (33%), Positives = 102/198 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L + T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Query: 390 KEERRARLQAQFSQMRPV 407
++ER A L A+ + V
Sbjct: 176 RKEREAELGARAKEFTNV 193
Score = 200 (75.5 bits), Expect = 4.0e-136, Sum P(2) = 4.0e-136
Identities = 41/85 (48%), Positives = 64/85 (75%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 595
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQA 575
ESPE+L++KV EA+ VL++ ++A
Sbjct: 596 ESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 111 (44.1 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
Score = 94 (38.1 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 28/124 (22%), Positives = 60/124 (48%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L F G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
Score = 39 (18.8 bits), Expect = 4.1e-119, Sum P(2) = 4.1e-119
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 507 SPEQQRTLLGESLYPLVEQLERDAAAKV 534
SPE R+ + E++ L ++AA KV
Sbjct: 597 SPESLRSKVDEAVAVLQAHQAKEAAQKV 624
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 1146 (408.5 bits), Expect = 1.4e-135, Sum P(2) = 1.4e-135
Identities = 221/383 (57%), Positives = 291/383 (75%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AIDK+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK+ FG+YG S VM D GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK + + +VG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ F+ FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFTPFGSITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 459 (166.6 bits), Expect = 4.2e-63, Sum P(2) = 4.2e-63
Identities = 105/298 (35%), Positives = 171/298 (57%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A++ +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LKE F ++G S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
G S+G GFV+F E+A +A+ +MNGK + K ++V AQ+K ER+ L+ +F QM+
Sbjct: 227 HGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMK 284
Score = 423 (154.0 bits), Expect = 8.1e-59, Sum P(2) = 8.1e-59
Identities = 104/290 (35%), Positives = 160/290 (55%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L + F +G L
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD G+S+GFGFV FE E AQ A+D +NG +N K +FVG +K ER+T +K
Sbjct: 219 SVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +G+ITSA VM +G G+SK FG
Sbjct: 278 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 209 (78.6 bits), Expect = 5.9e-30, Sum P(2) = 5.9e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 203 (76.5 bits), Expect = 1.4e-135, Sum P(2) = 1.4e-135
Identities = 44/94 (46%), Positives = 67/94 (71%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 595
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 584
ESPE+L++KV EA+ VL++ QA A ++ S
Sbjct: 596 ESPESLRSKVDEAVAVLQA---HQAKEAAQKVVS 626
Score = 113 (44.8 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 98 (39.6 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 28/124 (22%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L F+ G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 1146 (408.5 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
Identities = 221/383 (57%), Positives = 292/383 (76%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + + +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E D+ LK IF +YG S VM D +GKS+ FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA +AV+ +NGK+ + + YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM D G SKG GFV FS+PEEA++A+ EMNG+++ +K
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMD-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 361
Query: 381 PLYVAVAQRKEERRARLQAQFSQ 403
PLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 PLYVALAQRKEERQAHLTNQYMQ 384
Score = 472 (171.2 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
Identities = 107/298 (35%), Positives = 175/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I + V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGRPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DD+KLK++FS++G S +VM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+G S+G GFV+F E+A RA+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 NGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMK 284
Score = 444 (161.4 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 106/290 (36%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D L D FS +GN +
Sbjct: 160 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAM 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S ++ TD +G+S+GFGFV FE E AQ A+D++NG +N K ++VG +K ER+T +K
Sbjct: 219 SIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQT-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM DG G+SK FG
Sbjct: 278 RKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG-GRSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 386
Score = 211 (79.3 bits), Expect = 4.5e-30, Sum P(2) = 4.5e-30
Identities = 66/198 (33%), Positives = 102/198 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L + T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+ FD + + S+R+ L+ K V N++IKNL SID++ L
Sbjct: 70 DTMNFDVIKGRPVRIMW-SQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKALY 116
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
+ FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V +
Sbjct: 117 DTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 175
Query: 390 KEERRARLQAQFSQMRPV 407
++ER A L A+ + V
Sbjct: 176 RKEREAELGARAKEFTNV 193
Score = 202 (76.2 bits), Expect = 1.7e-135, Sum P(2) = 1.7e-135
Identities = 41/85 (48%), Positives = 64/85 (75%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 539 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHML 595
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQA 575
ESPE+L++KV EA+ VL++ ++A
Sbjct: 596 ESPESLRSKVDEAVAVLQAHQAKEA 620
Score = 112 (44.5 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 30/94 (31%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I +P+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQRDPSLR 94
Score = 104 (41.7 bits), Expect = 8.0e-19, Sum P(2) = 8.0e-19
Identities = 30/124 (24%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
D RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 326 MMDGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 382
Query: 122 IKNL 125
++ +
Sbjct: 383 MQRM 386
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 1134 (404.2 bits), Expect = 2.3e-133, Sum P(2) = 2.3e-133
Identities = 220/384 (57%), Positives = 291/384 (75%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + SLYVGDL ++T++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 4 ATAGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 63
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 64 ADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 123
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+ FV FE +++A AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 GNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 182
Query: 202 -VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K K F NV++KN + D+ LK++F +YG S VM D GKS+ FGFV++E
Sbjct: 183 EMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKH 242
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAVE +NG + + + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL
Sbjct: 243 EDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNL 302
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ S
Sbjct: 303 DDTIDDEKLRKEFSPFGSITSAKVMLE-EGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 361
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 362 KPLYVALAQRKEERKAHLTNQYMQ 385
Score = 464 (168.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 103/288 (35%), Positives = 171/288 (59%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L I L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N ++ K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 73 MNFDVVKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 128
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK + FV+FE D A +A+E +NG +DR+ +VG+ + + ERE E+ +
Sbjct: 129 CKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAK 187
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN GD +DD++LKELF ++G S KVM DP+G S+G GFV
Sbjct: 188 ----AKEFT------NVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFV 237
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
++ E+A++A+ EMNG + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 238 SYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLK 285
Score = 195 (73.7 bits), Expect = 1.9e-27, Sum P(2) = 1.9e-27
Identities = 64/200 (32%), Positives = 102/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G + S V RD + + G+ + N A A AL
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 70
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 71 DTMNFDVVK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNKA 115
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG FV F T + A RA+ +MNG ++ + ++V
Sbjct: 116 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRF 174
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A + A+ + V
Sbjct: 175 KSRKEREAEMGAKAKEFTNV 194
Score = 194 (73.4 bits), Expect = 2.3e-133, Sum P(2) = 2.3e-133
Identities = 43/91 (47%), Positives = 64/91 (70%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 540 GQE-PLTA--SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 596
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPADQ 581
ES E+L++KV EA+ VL++ QA A Q
Sbjct: 597 ESHESLRSKVEEAVAVLQA---HQAKKDATQ 624
Score = 113 (44.8 bits), Expect = 7.3e-19, Sum P(2) = 7.3e-19
Identities = 30/124 (24%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +++ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 267 AQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 326
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 327 M--LEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 383
Query: 122 IKNL 125
++ +
Sbjct: 384 MQRI 387
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 1110 (395.8 bits), Expect = 1.2e-132, Sum P(2) = 1.2e-132
Identities = 212/384 (55%), Positives = 289/384 (75%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+G + SLYVGDL +VT++ LY+ FS G ++S+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ATGAGYPLASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 447 (162.4 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 102/288 (35%), Positives = 170/288 (59%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G I+S ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + + + +R+ K+ NVF+KNLDES ++ L F +G I S
Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D G S+ +GFV+FE + A +A++ +NG +DR+ +VG KS RE+EL
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL--- 181
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
E K V +F N+YIKN G+ +DD++L+E+FS FG S KVM D +G S+G GFV
Sbjct: 182 -EYGAK--VMEFT--NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+ EEA +A++EMNGK + + +YV AQ++ ER+ L+ +F Q++
Sbjct: 237 NYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIK 284
Score = 418 (152.2 bits), Expect = 4.3e-59, Sum P(2) = 4.3e-59
Identities = 100/290 (34%), Positives = 158/290 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D R G+ + A+ A + ++
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMN 159
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGT----GNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ + S R+ + N++IKN + +D K L + FS+FGN L
Sbjct: 160 GMLLND-RKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ D +G+S+GFGFV + N E AQ A+ ++NG +N + ++VG ++ ER+ +K
Sbjct: 219 SVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQG-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ D+ L+K F YGTITSA VM +G G SK FG
Sbjct: 278 RKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 211 (79.3 bits), Expect = 1.2e-132, Sum P(2) = 1.2e-132
Identities = 45/92 (48%), Positives = 67/92 (72%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA S LA+A P++Q+ +LGE LYPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 538 GQE-PLTASS--LASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 551 ESPEALKAKVAEAMEVLRS-VAQQQANNPADQ 581
ESPE+L +KV EA+ VL++ A++ + A Q
Sbjct: 595 ESPESLHSKVEEAVAVLQAHQAKENSQKSAQQ 626
Score = 187 (70.9 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRD-IATRRSLGYA-YINFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ F E G+ + S+R+ L+ K V N++IKNL +SID++
Sbjct: 70 DTMNF---EVIKGRPIRIMWSQRDPGLR-------KSGVG-----NVFIKNLDESIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ + ER A+ + V
Sbjct: 174 KSRRERELEYGAKVMEFTNV 193
Score = 107 (42.7 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 30/124 (24%), Positives = 62/124 (50%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +++ Q ++ N++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ S G+G+V +++P +A +A+ +N ++ K + + + R RK+ N +
Sbjct: 326 MTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQY 382
Query: 122 IKNL 125
++ L
Sbjct: 383 MQRL 386
Score = 37 (18.1 bits), Expect = 2.9e-114, Sum P(2) = 2.9e-114
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 489 SVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
S+ + MP S A+ N P T L + + P V
Sbjct: 500 SIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAV 534
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 1118 (398.6 bits), Expect = 8.7e-132, Sum P(2) = 8.7e-132
Identities = 216/384 (56%), Positives = 286/384 (74%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
+ G + SLYVGDL +VT++ LY FS GQ++S+RVCRD+ TRRSLGY Y+N+ P
Sbjct: 3 SGGPAYPLASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA ALD +N+ + + IRIM+S RDP +RKSG GNIFIKN+D+SID+KAL+DTFS+F
Sbjct: 63 ADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G SKG+GFV FE +E+A AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F NV++KN E E LK IF E+G S VM D G+S+ FGFVNF N
Sbjct: 182 EMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
DA +AV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E + ++QG+NLY+KNL
Sbjct: 242 GDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
DSIDDEKL++ F+ +GTITS KVM D G S+G GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFAPYGTITSAKVMTD-GGHSRGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYIQ 384
Score = 434 (157.8 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 100/288 (34%), Positives = 165/288 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L+ FS G I+S ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + + + +R+ K+ N+F+KN+DES ++ L F +G I S
Sbjct: 72 MNYEVIKGRPIRI----MWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG + + ERE E+ +
Sbjct: 128 CKVVCDENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAK 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
A++ T N+YIKN G+ ID EKLK +F+EFG S VM D G S+G GFV
Sbjct: 187 ---AVEFT-------NVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
F +A RA+ EMNGK + + LYV AQ++ ER+ L+ +F Q++
Sbjct: 237 NFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIK 284
Score = 391 (142.7 bits), Expect = 2.9e-51, Sum P(2) = 2.9e-51
Identities = 98/290 (33%), Positives = 157/290 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ ++D ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSIRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + N++IKN + ID + L + F+ FG L
Sbjct: 160 GMLLNDRKVFVGHFKSR-KEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S + TD G+S+GFGFV F N A+ A+ ++NG +N + ++VG ++ ER+ +K
Sbjct: 219 SVCVMTDERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQG-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+S DE L+K F YGTITSA VM DG G S+ FG
Sbjct: 278 RKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG-GHSRGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRL 386
Score = 195 (73.7 bits), Expect = 8.7e-132, Sum P(2) = 8.7e-132
Identities = 54/122 (44%), Positives = 77/122 (63%)
Query: 452 YRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASV---GQPMPITALSTALANAS 507
Y+Y G RN+Q + A P PV + + + +V GQ P+TA + LA A
Sbjct: 501 YKYSAGVRNVQQV---INA----PAPV-VHQVVQNTEPAVHMKGQE-PLTA--SMLAAAP 549
Query: 508 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 567
++Q+ LLGE LYPL++ L A K+TGMLLE+D +E+LH+LESPE+L AKV EA+ VL
Sbjct: 550 LKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEEAVAVL 609
Query: 568 RS 569
++
Sbjct: 610 QA 611
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 1129 (402.5 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
Identities = 218/384 (56%), Positives = 290/384 (75%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
ASG+ + SLYVGDL +VT++ LY+ FS G +LS+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
DSIDD+KL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 426 (155.0 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57
Identities = 100/296 (33%), Positives = 169/296 (57%)
Query: 115 SGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 169
SG+G ++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 170 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
A+ A+D +N ++ + + + +R+ K+ N+F+KNL++S ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 230 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289
+G I S V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
RE EL + A++ T N+Y+KNL +D++ L++LFS+FG + S KVMRD SG
Sbjct: 179 REAELGAR---ALEFT-------NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
S+ GFV F EEA +A+ MNGK + + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
Score = 395 (144.1 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
Identities = 101/291 (34%), Positives = 155/291 (53%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +L+ ++ + LYD FS G +LS +V D R G+ + A A ++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMN 159
Query: 90 --VLNFTPL---NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI 144
+LN + + KS R + R NI++KNL +D + L D FS FG +
Sbjct: 160 GMLLNDRKVFVGHFKSRR--EREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
LS K+ D SG S+ FGFV FE E AQ A+ +NG ++ + ++ G ++ ER+ +
Sbjct: 218 LSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN-EL 276
Query: 205 KTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251
K +F N++VKNLD+S D+ L+K F YG ITSA VM +G G SK F
Sbjct: 277 KRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG-GHSKGF 335
Query: 252 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
GFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 178 (67.7 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
Identities = 41/88 (46%), Positives = 58/88 (65%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L +L
Sbjct: 527 GQE-PLTA--SMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLML 583
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNP 578
ESPE+L AK+ EA+ VL+ A Q P
Sbjct: 584 ESPESLHAKIDEAVAVLQ--AHQAMEQP 609
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 1112 (396.5 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
Identities = 215/384 (55%), Positives = 286/384 (74%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
ASG + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+++RRSLGY Y+N+ P
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + +RIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D +G S+G GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREA 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F NV++KN + D L++IF +G S VM D G+SK FGFVNFE
Sbjct: 182 EFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E V ++QG+NLY+KNL
Sbjct: 242 EEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D IDDE+L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDERLRKEFSPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 465 (168.7 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 106/288 (36%), Positives = 169/288 (58%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS ++ D S +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + V + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFEVIKGRPVRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G S+ GFV+FE + A +A++ +NG +DR+ +VG + + ERE E +
Sbjct: 128 CKVVCDENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGAR 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
AM+ T N+YIKN GD +DD +L+E+FS FG S KVM D +G SKG GFV
Sbjct: 187 ---AMEFT-------NVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
F EEA +A+A+MNGK I + +YV AQ++ ER++ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMK 284
Score = 412 (150.1 bits), Expect = 1.9e-55, Sum P(2) = 1.9e-55
Identities = 104/289 (35%), Positives = 155/289 (53%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + R G+ + A A + ++
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHR-DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
+LN + + + R N++IKN +D L + FS FG LS
Sbjct: 160 GMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLS 219
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 206
K+ D +G+SKGFGFV FE E AQ A+ +NG IN + V+VG ++ ER++ +K
Sbjct: 220 VKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQS-ELKR 278
Query: 207 KFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 253
KF N++VKNLD+ DE L+K F YGTITSA VM +G G SK FGF
Sbjct: 279 KFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEG-GHSKGFGF 337
Query: 254 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
V F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 195 (73.7 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
Identities = 53/127 (41%), Positives = 79/127 (62%)
Query: 452 YRYPLG-RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQ 510
Y+Y L RN+Q P MG+ +P P G P GQ P+TA + LA A P++
Sbjct: 509 YKYSLAVRNIQ--P--MGS---VP-PGAQQVGEPAVHIQ-GQE-PLTA--SMLAAAPPQE 556
Query: 511 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 570
Q+ ++GE LYPL+ + A K+TGMLLE+D +E+L LLESPE+L +K+ EA+ VL++
Sbjct: 557 QKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAVAVLQAH 616
Query: 571 AQQQANN 577
+A++
Sbjct: 617 QATEASH 623
Score = 102 (41.0 bits), Expect = 7.6e-18, Sum P(2) = 7.6e-18
Identities = 29/124 (23%), Positives = 63/124 (50%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +++ Q+++ +++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFSPYGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ S G+G+V +++P +A +A+ +N ++ K + + + R RK+ N +
Sbjct: 326 MTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQY 382
Query: 122 IKNL 125
++ L
Sbjct: 383 MQRL 386
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 1098 (391.6 bits), Expect = 7.7e-131, Sum P(2) = 7.7e-131
Identities = 209/384 (54%), Positives = 286/384 (74%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+G + SLY+GDL +VT++ LY+ FS G ++S+RVCRD++TRRSL Y Y+N+ P
Sbjct: 3 ATGAGYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD+SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D G S+G+GFV FE E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F NV++KN E D+ L++IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D IDD++L++ F +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFLPYGTITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 445 (161.7 bits), Expect = 6.1e-62, Sum P(2) = 6.1e-62
Identities = 103/288 (35%), Positives = 170/288 (59%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
+++I +L + L++ FS G I+S ++ D + +S + ++ F+ A+ A+D
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + + + +R+ K+ NVF+KNLDES ++ L F +G I S
Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D G S+ +GFV+FE + A +A++ +NG +DR+ +VG KS RE+EL
Sbjct: 128 CKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL--- 181
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
E K V +F N+YIKN G+ +DD++L+E+FS FG S KVM D SG S+G GFV
Sbjct: 182 -EYGAK--VMEFT--NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+ EEA +A++EMNGK + + +YV AQ++ ER++ L+ +F Q++
Sbjct: 237 NYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIK 284
Score = 419 (152.6 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 101/290 (34%), Positives = 159/290 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D R G+ + A+ A + ++
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMN 159
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGT----GNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ + S R+ + N++IKN + +D K L + FS+FGN L
Sbjct: 160 GMLLND-RKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ D SG+S+GFGFV + N E AQ A+ ++NG +N + ++VG ++ ER++ +K
Sbjct: 219 SVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQS-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ D+ L+K F YGTITSA VM +G G SK FG
Sbjct: 278 RKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 206 (77.6 bits), Expect = 7.7e-131, Sum P(2) = 7.7e-131
Identities = 49/131 (37%), Positives = 77/131 (58%)
Query: 458 RNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM-PITALSTALANASPEQQRTLLG 516
R M + + G ++ P+ A + Q P+TA + LA A P++Q+ +LG
Sbjct: 503 RTMPHYKYSCGVRNVQPIVSSTHLQQVMEPAVLMQGQEPLTA--SLLAGAPPQEQKQMLG 560
Query: 517 ESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 576
E +YP++ ++ A K+TGMLLE+D +E+LH+LESPE+L +KV EA+ VL++ QA
Sbjct: 561 ERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQA---HQAK 617
Query: 577 NPADQLASLSL 587
A + A SL
Sbjct: 618 ENAQKSAQPSL 628
Score = 179 (68.1 bits), Expect = 4.1e-27, Sum P(2) = 4.1e-27
Identities = 39/95 (41%), Positives = 58/95 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N++IKNL +SID++ L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ M
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTM 158
Query: 373 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
NG ++ + ++V + + ER A+ + V
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNV 193
Score = 102 (41.0 bits), Expect = 4.5e-19, Sum P(2) = 4.5e-19
Identities = 29/124 (23%), Positives = 62/124 (50%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +++ Q+++ N++ +LYV +LD + D +L F G + S +V
Sbjct: 266 AQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ S G+G+V +++P +A +A+ +N ++ K + + + R RK+ N +
Sbjct: 326 MTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQY 382
Query: 122 IKNL 125
++ L
Sbjct: 383 MQRL 386
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 1117 (398.3 bits), Expect = 4.2e-130, Sum P(2) = 4.2e-130
Identities = 218/384 (56%), Positives = 287/384 (74%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
ASG + SLYVGDL +VT++ LY+ FS G +LS+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GN+FIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D G S+GFGFV FE E+AQNAI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F N++VKNL + L+ +F ++G I S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
+DA KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
DSIDDEKL++ F+ +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFAPYGMITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYIQ 384
Score = 441 (160.3 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 101/288 (35%), Positives = 167/288 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + + + +R+ K+ NVF+KNL++S ++ L F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D G S+ FGFV+FE + A A+ +NG +DR+ +VG + + ERE EL +
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
A++ T N+Y+KNL +D+ L++LFS+FG I S KVMRD SG S+G GFV
Sbjct: 187 ---ALEFT-------NIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
F E+A +A+ +MNGK + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 237 NFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMK 284
Score = 417 (151.9 bits), Expect = 4.7e-56, Sum P(2) = 4.7e-56
Identities = 106/291 (36%), Positives = 159/291 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA-DAARALD 89
++++ +L+ ++ + LYD FS G +LS +V D R G+ + A +A R ++
Sbjct: 100 NVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMN 159
Query: 90 --VLNFTPL---NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI 144
+LN + + KS R + R NI++KNL +D + L D FS FG I
Sbjct: 160 GMLLNDRKVFVGHFKSRR--EREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKI 217
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
LS K+ D SG S+GFGFV FE E AQ A+ +NG ++ + ++VG ++ ER+ +
Sbjct: 218 LSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQN-EL 276
Query: 205 KTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251
K +F N++VKNLD+S DE L+K F YG ITSA VM +G G SK F
Sbjct: 277 KRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEG-GHSKGF 335
Query: 252 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
GFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQRL 386
Score = 180 (68.4 bits), Expect = 4.2e-130, Sum P(2) = 4.2e-130
Identities = 40/90 (44%), Positives = 60/90 (66%)
Query: 480 GAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLL 539
G +PR++ P+TA + LA A +Q+ ++GE LYPL+ + A K+TGMLL
Sbjct: 520 GVRVPRQE-------PLTA--SVLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLL 570
Query: 540 EMDQTEVLHLLESPEALKAKVAEAMEVLRS 569
E+D +E+L +LESPE+L AKV EA+ VL++
Sbjct: 571 EIDNSELLLMLESPESLSAKVEEALAVLQA 600
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 1100 (392.3 bits), Expect = 6.9e-130, Sum P(2) = 6.9e-130
Identities = 210/384 (54%), Positives = 288/384 (75%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ ++ SLY+GDL +VT++ LY+ FS G ++S+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GN+FIKNLD SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
G+ILSCK+ D G S+G+GFV FE +E+A AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRREREL 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F NV++KN E D+ LK+IF +G S VM D G+S+ FGFVN+ N
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ + R YVG+AQK+ ER+ ELK +FEQ +E ++++QG+NLY+KNL
Sbjct: 242 EEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D IDD++L++ FS +GTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDGIDDDRLRKEFSPYGTITSTKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 445 (161.7 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 104/288 (36%), Positives = 169/288 (58%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
+++I +L + L++ FS G I+S ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFEVIKGRPIRI----MWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D G S+ +GFV+FE + A +A++ +NG +DR+ +VG KS RE+EL
Sbjct: 128 CKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF--KSRREREL--- 181
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
E K V +F N+YIKN G+ +DD++LKE+FS FG S KVM D SG S+G GFV
Sbjct: 182 -EYGAK--VMEFT--NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+ EEA +A+ EMNGK + + +YV AQ++ ER+ L+ +F Q++
Sbjct: 237 NYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIK 284
Score = 416 (151.5 bits), Expect = 3.7e-57, Sum P(2) = 3.7e-57
Identities = 101/290 (34%), Positives = 157/290 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D R G+ + A+ A + ++
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMN 159
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGT----GNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ + S R+ + N++IKN + +D K L + FS+FGN L
Sbjct: 160 GMLLND-RKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ D SG+S+GFGFV + N E AQ A+ ++NG +N + V+VG ++ ER+ +K
Sbjct: 219 SVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQG-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ D+ L+K F YGTITS VM +G G SK FG
Sbjct: 278 RKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GHSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 195 (73.7 bits), Expect = 6.9e-130, Sum P(2) = 6.9e-130
Identities = 45/97 (46%), Positives = 66/97 (68%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA A ++Q+ +LGE +YPL+ ++ A K+TGMLLE+D +E+LH+L
Sbjct: 538 GQE-PLTA--SLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHML 594
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLASLSL 587
ESPE+L +KV EA+ VL++ QA A + A SL
Sbjct: 595 ESPESLHSKVEEAVAVLQA---HQAKESAPKSAPQSL 628
Score = 188 (71.2 bits), Expect = 7.9e-27, Sum P(2) = 7.9e-27
Identities = 64/200 (32%), Positives = 98/200 (49%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
++++ +L T+ L + F G I S V RD + G+ + N A A AL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRD-IATRRSLGYA-YINFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ F E G+ + S+R+ L+ K V N++IKNL DSID++
Sbjct: 70 DTMNF---EVIKGRPIRIMWSQRDPGLR-------KSGVG-----NVFIKNLDDSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D G S+G GFV F T E A+RA+ MNG ++ + ++V
Sbjct: 115 LYDTFSAFGDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ + ER A+ + V
Sbjct: 174 KSRRERELEYGAKVMEFTNV 193
Score = 113 (44.8 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFS 360
M T ++ +LYI +L + + L E FS G I S +V RD + S G ++ F
Sbjct: 1 MNATRAEYPLASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQR 389
P +A RAL MN ++I +P+ + +QR
Sbjct: 61 QPADAERALDTMNFEVIKGRPIRIMWSQR 89
Score = 107 (42.7 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 30/124 (24%), Positives = 62/124 (50%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +++ Q ++ N++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ S G+G+V +++P +A +A+ +N ++ K + + + R RK+ N +
Sbjct: 326 MTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE-RKAILTNQY 382
Query: 122 IKNL 125
++ L
Sbjct: 383 MQRL 386
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 1116 (397.9 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
Identities = 217/384 (56%), Positives = 288/384 (75%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
ASG + SLYVGDL +VT++ LY+ FS G +LS+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ASGPGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D G S+GFGFV FE E+AQNAI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+ FGFVNFE
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NG++ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 443 (161.0 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 100/288 (34%), Positives = 168/288 (58%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + + + +R+ K+ N+F+KNL++S ++ L F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D G S+ FGFV+FE + A A+ +NG +DR+ +VG + + ERE EL +
Sbjct: 128 CKVVCDEHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGAR 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
AM+ T N+Y+KNL +D+++L++LFS+FG + S KVMRD SG S+G GFV
Sbjct: 187 ---AMEFT-------NIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
F EEA +A+ MNG+ + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMK 284
Score = 410 (149.4 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
Identities = 100/290 (34%), Positives = 154/290 (53%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA-DAARALD 89
++++ +L+ ++ + LYD FS G +LS +V D R G+ + A +A ++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMN 159
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTG----NIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ + S R+ + NI++KNL +D + L D FS FG +L
Sbjct: 160 GMLLND-RKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKML 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ D SG S+GFGFV FE E AQ A+ +NG ++ + ++VG ++ ER+ +K
Sbjct: 219 SVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQN-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
+F N++VKNLD+S DE L+K F YG ITSA VM +G G SK FG
Sbjct: 278 RRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q +
Sbjct: 337 FVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRL 386
Score = 174 (66.3 bits), Expect = 2.3e-129, Sum P(2) = 2.3e-129
Identities = 39/79 (49%), Positives = 56/79 (70%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA A +Q+ ++GE L+PLV + A K+TGMLLE+D +E+L +L
Sbjct: 530 GQE-PLTA--SMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLML 586
Query: 551 ESPEALKAKVAEAMEVLRS 569
ESPE+L AKV EA+ VL++
Sbjct: 587 ESPESLNAKVEEALAVLQA 605
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 1111 (396.2 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 217/384 (56%), Positives = 286/384 (74%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
ASG F SLYVGDL +VT++ LY+ FS G +LS+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ASGPGFPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+ D G S+GFGFV FE E+AQ AI +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREV 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F N++VKNL ++ L+ +F +G + S VMRD G S+ FGFVNF+
Sbjct: 182 ELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ R YVG+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
DSIDDEKL++ FS +G ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMNGRILGT 360
Query: 380 KPLYVAVAQRKEERRARLQAQFSQ 403
KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQ 384
Score = 442 (160.7 bits), Expect = 2.5e-58, Sum P(2) = 2.5e-58
Identities = 100/288 (34%), Positives = 169/288 (58%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + + + +R+ K+ N+F+KNL++S ++ L F +G I S
Sbjct: 72 MNFEVIKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + ERE EL +
Sbjct: 128 CKVVCDDHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGAR 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
AM+ T N+Y+KNL +D++ L++LFS FG + S KVMRD SG S+G GFV
Sbjct: 187 ---AMEFT-------NIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
F EEA +A+ +MNGK + + LYV AQ++ ER++ L+ +F Q++
Sbjct: 237 NFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLK 284
Score = 407 (148.3 bits), Expect = 6.0e-52, Sum P(2) = 6.0e-52
Identities = 102/299 (34%), Positives = 157/299 (52%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +L+ ++ + LYD FS G +LS +V D R G+ + A A ++
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMN 159
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTG----NIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ + S R+ + NI++KNL +D + L D FS FG +L
Sbjct: 160 GMLLND-RKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKML 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ D SG S+GFGFV F+ E AQ A+ +NG ++ + ++VG ++ ER++ +K
Sbjct: 219 SVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQS-ELK 277
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
+F N++VKNLD+S DE L+K F YG ITSA VM +G G SK FG
Sbjct: 278 RRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEG-GHSKGFG 336
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQG 311
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q + TV G
Sbjct: 337 FVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQRLS-TVRALGG 394
Score = 177 (67.4 bits), Expect = 3.8e-129, Sum P(2) = 3.8e-129
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 490 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHL 549
+GQ P+TA + LA A +Q+ ++GE LYPL+ A K+TGMLLE+D +E+L +
Sbjct: 565 LGQE-PLTA--SMLAAAPLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLM 621
Query: 550 LESPEALKAKVAEAMEVLRS 569
LESPE+L AKV EA+ VL++
Sbjct: 622 LESPESLNAKVEEALAVLQA 641
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 969 (346.2 bits), Expect = 5.7e-129, Sum P(3) = 5.7e-129
Identities = 182/337 (54%), Positives = 255/337 (75%)
Query: 13 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLG 72
+GP + A+ + + SLYVG+LD +VT++ L++LFSQ+G V S+RVCRD TRRSLG
Sbjct: 46 AGPT--PSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLG 103
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHK 132
Y YVNY AD +AL+ LN+T + + RIM+S RDP++RK+G GN+FIKNLD +ID+K
Sbjct: 104 YAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNK 163
Query: 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 192
ALHDTF++FGNILSCK+A D +G SKG+GFV +E E+A AI +NGML+N+K+V+VGH
Sbjct: 164 ALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGH 223
Query: 193 FLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSK 249
+ K++R++ +K F N++VKN++ TD++ + +F +YG +TS+ + RD + GKS+
Sbjct: 224 HIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSR 283
Query: 250 CFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF 309
FGFVNF + +DA+KAV+ LN K+F + YVG+AQKK ERE+EL+ +E A +E K+
Sbjct: 284 GFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKY 343
Query: 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 346
QG+NLYIKNL D +DDEKL++LFSEFG ITS KVMRD
Sbjct: 344 QGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 396 (144.5 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
Identities = 89/291 (30%), Positives = 161/291 (55%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 175
+ ++++ LD S+ L + FS G++ S ++ D + +S G+ +V + + A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 176 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 235
++LN LI + + +R+ KT NVF+KNLD + ++ L F +G I
Sbjct: 120 EELNYTLIKGRPCRI----MWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 236 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 295
S V +D +G SK +GFV++E + A++A++ +NG ++++ YVG K +R+ +
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSK-- 233
Query: 296 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGS 354
F++ MK N+Y+KN+ + D++ + LF ++G +TS + RD +G S+G
Sbjct: 234 --FDE-MKANFT-----NIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGF 285
Query: 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
GFV F++ E+AS+A+ E+N K + LYV AQ+K ER L+ + R
Sbjct: 286 GFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAAR 336
Score = 180 (68.4 bits), Expect = 5.7e-129, Sum P(3) = 5.7e-129
Identities = 39/104 (37%), Positives = 62/104 (59%)
Query: 481 AGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLE 540
AG P G P + A+A+ +P QQ+ +LGE+++P ++ + + A K+TGMLLE
Sbjct: 651 AGAPAGARGAGAPEGLQGQLAAVAD-NPGQQKQILGEAIFPKIQAIHPELAGKITGMLLE 709
Query: 541 MDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPADQLAS 584
MD TE++ L+E+ AL++KV EA+ V +QQ + Q S
Sbjct: 710 MDNTELVALVENDGALRSKVDEALAVYDDYVRQQGDGEGAQAPS 753
Score = 152 (58.6 bits), Expect = 5.7e-129, Sum P(3) = 5.7e-129
Identities = 31/57 (54%), Positives = 45/57 (78%)
Query: 349 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
G SKG GFV F+ P++A++A+AEMN +M+ +KPLYVA+AQRK+ R+ +L+ Q Q R
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQAR 485
Score = 117 (46.2 bits), Expect = 2.6e-21, Sum P(3) = 2.6e-21
Identities = 27/59 (45%), Positives = 37/59 (62%)
Query: 246 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 304
GKSK FGFV F N DDA KAV +N + +++ YV AQ+K R+ +L+ Q QA +
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQLE-QSIQARNQ 487
Score = 98 (39.6 bits), Expect = 2.3e-19, Sum P(3) = 2.3e-19
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 155 GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 200
G+SKGFGFV F N + A A+ ++N ++N+K ++V RK R+
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRK 475
Score = 84 (34.6 bits), Expect = 6.4e-18, Sum P(3) = 6.4e-18
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 69 RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS 115
+S G+G+V +ANP DA +A+ +N +NNK + + + R +RK+
Sbjct: 431 KSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRK-DVRKN 476
Score = 80 (33.2 bits), Expect = 6.5e-25, Sum P(3) = 6.5e-25
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ + + + ++ A +++ +LY+ +LD V D +L LFS+ G + S +V
Sbjct: 318 AQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
Query: 62 CRDLST 67
RD T
Sbjct: 378 MRDSIT 383
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 1119 (399.0 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
Identities = 210/383 (54%), Positives = 291/383 (75%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A SG + SLYVG+LD +VT++ L++LF+ +G V S+RVCRD TRRSLGY YVN+
Sbjct: 70 ATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFH 129
Query: 80 NPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFS 139
N D +ALD LN+T + + RIM+S RDPS+RK GTGN+FIKNLD +ID+KALHDTFS
Sbjct: 130 NMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFS 189
Query: 140 SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+FG ILSCK+A D G +KG+GFV F++ ESA AI+ +NGML+NDK+V+VGH + ++ER
Sbjct: 190 AFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRER 249
Query: 200 ETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 257
++ A+K F NV++KNLD T+++ +FG++G ITS +++D + K + FGFVN+
Sbjct: 250 QSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYA 309
Query: 258 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 317
N + A KAV+ LN K++ ++ YVG+AQKK ERE+EL+ ++EQ E ++K+QG+NL+IK
Sbjct: 310 NHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIK 369
Query: 318 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
NL D +DDE+LK FS FGTITS K+M D G SKG GFV ++TPEEA++A+ EMN +M+
Sbjct: 370 NLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRML 429
Query: 378 VSKPLYVAVAQRKEERRARLQAQ 400
KPLYVA+AQRKE RR++L+AQ
Sbjct: 430 AGKPLYVALAQRKEVRRSQLEAQ 452
Score = 407 (148.3 bits), Expect = 5.7e-50, Sum P(2) = 5.7e-50
Identities = 95/297 (31%), Positives = 160/297 (53%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
PS + ++++ LD S+ L + F+S G + S ++ D + +S G+ +V F N
Sbjct: 72 PSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNM 131
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E + A+D+LN LI + + +R+ K NVF+KNLD + ++ L
Sbjct: 132 EDGEKALDELNYTLIKGRPCRI----MWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDT 187
Query: 229 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 288
F +G I S V D G +K +GFV+F++ + A A+E +NG +D++ YVG +
Sbjct: 188 FSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRR 247
Query: 289 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 348
ER+ ++ +A+K N+YIKNL I +++ +LF +FG ITS +++D +
Sbjct: 248 ERQSKV-----EALKANFT-----NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQN 297
Query: 349 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+G GFV ++ E A +A+ E+N K K LYV AQ+K ER L+ ++ QM+
Sbjct: 298 DKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMK 354
Score = 339 (124.4 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 77/198 (38%), Positives = 107/198 (54%)
Query: 114 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 173
K+ N++IKNLD I + D F FG I S + D + + +GFGFV + N E AQ
Sbjct: 257 KANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQK 316
Query: 174 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKT-------KFN-----NVFVKNLDESTT 221
A+D+LN K+++VG +K ERE K K N N+F+KNL +
Sbjct: 317 AVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVD 376
Query: 222 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 281
DE LK F +GTITSA +M D GKSK FGFV + ++A KAV +N + + YV
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYV 436
Query: 282 GKAQKKSEREQELKGQFE 299
AQ+K R +L+ Q +
Sbjct: 437 ALAQRKEVRRSQLEAQIQ 454
Score = 159 (61.0 bits), Expect = 4.3e-128, Sum P(2) = 4.3e-128
Identities = 48/127 (37%), Positives = 63/127 (49%)
Query: 449 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQP-MPITALSTALANAS 507
G A YP G N + G M+P V AG +A P MP + LA
Sbjct: 524 GPAPGYP-GMNARGPVPAQGRPMMMPGSVP-SAGPAEAEAVPAVPGMPERFTAADLAAVP 581
Query: 508 PEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 567
E ++ +LGE LYP V E + K+TGMLLEM +E+L LLE AL +V EA+ VL
Sbjct: 582 EESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL 641
Query: 568 RSVAQQQ 574
+ Q+
Sbjct: 642 QEFVDQE 648
Score = 38 (18.4 bits), Expect = 2.6e-115, Sum P(2) = 2.6e-115
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 368 ALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 404
A+ E + K ++ + LY V R+E+ ++ +M
Sbjct: 579 AVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEM 615
Score = 38 (18.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTT 30
AQIQ ++Q ++ AAG Q+ T
Sbjct: 451 AQIQARNQFRLQQQVAAAAGIPAVQYGAT 479
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 1076 (383.8 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 209/377 (55%), Positives = 279/377 (74%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T SLYVGDL +VT++ LY+ FS G +LS+R+CRDL T S Y YVN+ + DA AL
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL 69
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
D +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGNILSC
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 207
+ D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE + + K
Sbjct: 130 VVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAK 188
Query: 208 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D IDDE
Sbjct: 249 DEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDE 308
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+
Sbjct: 309 RLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 367
Query: 387 AQRKEERRARLQAQFSQ 403
AQRKEER+A L ++ Q
Sbjct: 368 AQRKEERQAYLTNEYMQ 384
Score = 468 (169.8 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
Identities = 113/299 (37%), Positives = 174/299 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 166
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 167 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 226
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 227 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 346
+ ERE EL + KE F N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGAR----AKE----FP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 347 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
Score = 438 (159.2 bits), Expect = 5.9e-60, Sum P(2) = 5.9e-60
Identities = 106/289 (36%), Positives = 162/289 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
+++V +LD ++ + LYD S G +LS V D + + G+ + A+ A + ++
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L D F FG L
Sbjct: 160 GMLLNGRKVFVGQFKSR-KEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +
Sbjct: 219 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 278
Query: 206 T----------KFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 253
T ++ N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGF
Sbjct: 279 TFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGF 337
Query: 254 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
V F + ++A KAV +NG+ + YV AQ+K ER+ L ++ Q M
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRM 386
Score = 195 (73.7 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 37/83 (44%), Positives = 62/83 (74%)
Query: 497 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 556
T ++ LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+L++LESPE+L
Sbjct: 539 TLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESL 598
Query: 557 KAKVAEAMEVLRSVAQQQANNPA 579
++KV EA+ VL++ ++A A
Sbjct: 599 RSKVDEAVAVLQAHQAKEATQKA 621
Score = 193 (73.0 bits), Expect = 2.4e-27, Sum P(2) = 2.4e-27
Identities = 64/185 (34%), Positives = 89/185 (48%)
Query: 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
KQ+R T + + N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FGFV
Sbjct: 284 KQDRIT---RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVC 339
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET--VDK----- 308
F + ++A KAV +NG+ + YV AQ+K ER+ L ++ Q M V
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPP 399
Query: 309 ---FQGLNLYIKNLGDSIDDEKLKELF-SEFGTITSCK---VMRDPSGISKGSGFVAFST 361
F +N ++ L S T + PS I G+ V FST
Sbjct: 400 SGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPFQNKPSAIRPGAPRVPFST 459
Query: 362 PEEAS 366
AS
Sbjct: 460 MRPAS 464
Score = 103 (41.3 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 27/107 (25%), Positives = 53/107 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108
+ RS G+G+V +++P +A +A+ +N + K + + + R
Sbjct: 326 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Score = 101 (40.6 bits), Expect = 9.6e-18, Sum P(2) = 9.6e-18
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD--PSGISKGSGFVAF 359
M + + +LY+ +L + + L E FS G I S ++ RD SG S +V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSG-SSNYAYVNF 59
Query: 360 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
++A AL MN +I KP+ + +QR R
Sbjct: 60 QHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 1096 (390.9 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
Identities = 213/375 (56%), Positives = 285/375 (76%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SLYVGDL +VT++ LY+ FS G +LS+RV RD+ TRRSLGY VN+ PADA RALD
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
+NF + K +RIM+S RDPS+R+SG GN+FIKNL+K+ID+KAL+DTFS+FGNILSCK+
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVV 131
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK-F 208
D +G SKG GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE + +TK F
Sbjct: 132 CDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEF 190
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
NV++KN + D+ L +FG +G + S VM D GKSK FGFV+FE +DA KAV+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
+NGK+ + + YVG AQKK +R ELK +FEQ ++ ++QG+NLY+KNL D IDDE+L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
++ FS FGTITS KVM + G SKG GFV FS+PEEA++A++EMNG+++ +KPLYVA+AQ
Sbjct: 311 QKEFSPFGTITSTKVMTE-GGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQ 369
Query: 389 RKEERRARLQAQFSQ 403
RKEER+A L Q+ Q
Sbjct: 370 RKEERQAHLTNQYIQ 384
Score = 437 (158.9 bits), Expect = 1.2e-57, Sum P(2) = 1.2e-57
Identities = 105/287 (36%), Positives = 163/287 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FSS G ILS ++ D + +S G+ V FE A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K V + +R+ ++ NVF+KNL+++ ++ L F +G I S
Sbjct: 72 MNFDVIKGKPVRI----MWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+ D +G SK GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 128 CKVVCDENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTR 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
KE N+YIKN GD +DD+ L LF FG + S KVM D G SKG GFV
Sbjct: 187 ----TKEFT------NVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFV 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 404
+F E+A +A+ EMNGK + K +YV AQ+K +R L+ +F Q+
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQV 283
Score = 423 (154.0 bits), Expect = 8.3e-56, Sum P(2) = 8.3e-56
Identities = 103/291 (35%), Positives = 157/291 (53%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +L+ + + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMN 159
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHDTFSSFGNI 144
+ + K + R + GT N++IKN +D K L+ F FG +
Sbjct: 160 GMLLN--DRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQV 217
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
LS K+ TD G+SKGFGFV FE E AQ A+D++NG +N K ++VG +K +R + +
Sbjct: 218 LSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRH-IEL 276
Query: 205 KTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251
K KF N++VKNLD+ DE L+K F +GTITS VM +G G+SK F
Sbjct: 277 KRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEG-GRSKGF 335
Query: 252 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
GFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 336 GFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQRM 386
Score = 275 (101.9 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 69/188 (36%), Positives = 104/188 (55%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T++Y+ + + D L LF + GQVLSV+V D +S G+G+V++ DA +A+D
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVD 249
Query: 90 VLNFTPLNNKSIRI------MYSH-----------RDPSIRKSGTGNIFIKNLDKSIDHK 132
+N LN K I + + H +D IR G N+++KNLD ID +
Sbjct: 250 EMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGI-NLYVKNLDDGIDDE 308
Query: 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 192
L FS FG I S K+ T+G G+SKGFGFV F + E A A+ ++NG ++ K ++V
Sbjct: 309 RLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVAL 367
Query: 193 FLRKQERE 200
RK+ER+
Sbjct: 368 AQRKEERQ 375
Score = 174 (66.3 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
Identities = 42/93 (45%), Positives = 62/93 (66%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P TA ST L A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E LH+L
Sbjct: 536 GQE-PWTA-ST-LGTA-PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHML 591
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPADQLA 583
+SPE+L ++ EA+ L++ QAN A + A
Sbjct: 592 DSPESLCSRAQEAVSALQA---HQANEAAQKAA 621
Score = 105 (42.0 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 27/102 (26%), Positives = 54/102 (52%)
Query: 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPAD 83
G ++ +LYV +LD + D +L FS G + S +V + RS G+G+V +++P +
Sbjct: 288 GIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEE 345
Query: 84 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL 125
A +A+ +N + K + + + R R++ N +I+ +
Sbjct: 346 ATKAVSEMNGRIVATKPLYVALAQRKEE-RQAHLTNQYIQRM 386
Score = 43 (20.2 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
Identities = 22/92 (23%), Positives = 37/92 (40%)
Query: 450 HAYR-YPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASP 508
+AY+ P G ++ P P + + R A +P P +S A A+P
Sbjct: 398 NAYQPAPSGYSVAAVPQTQNCAPCCPSQIVQPSPSTRWTAQGARPHPFPNVSGASHPAAP 457
Query: 509 EQQRTLL--GESLYPLVEQLER--DAAAKVTG 536
+ T + S P V +R + +A+ TG
Sbjct: 458 KSSFTTVRPSSSHVPQVMAAQRITNTSAQTTG 489
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 1047 (373.6 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 201/339 (59%), Positives = 263/339 (77%)
Query: 67 TRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLD 126
TRRSLGY YVN+ PADA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLD
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 127 KSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186
KSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND+
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDR 121
Query: 187 QVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 244
+VFVG F ++ERE + + K F NV++KN E DE LK +FG++G S VM D
Sbjct: 122 KVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 181
Query: 245 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 304
GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++
Sbjct: 182 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQD 241
Query: 305 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 364
+ ++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEE
Sbjct: 242 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEE 300
Query: 365 ASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403
A++A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 301 ATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 339
Score = 452 (164.2 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 109/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 114
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L D F FG L
Sbjct: 115 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 173
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 174 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 232
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 233 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 291
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 292 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 341
Score = 442 (160.7 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 100/250 (40%), Positives = 150/250 (60%)
Query: 156 QSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKN 215
+S G+ +V F+ A+ A+D +N +I K V + +R+ K+ N+F+KN
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKN 60
Query: 216 LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275
LD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLN 119
Query: 276 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEF 335
DR+ +VG+ + + ERE EL + KE N+YIKN G+ +DDE+LK+LF +F
Sbjct: 120 DRKVFVGRFKSRKEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKF 169
Query: 336 GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 395
G S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+
Sbjct: 170 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT 229
Query: 396 RLQAQFSQMR 405
L+ +F QM+
Sbjct: 230 ELKRKFEQMK 239
Score = 272 (100.8 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 69/197 (35%), Positives = 107/197 (54%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + ++ D +L DLF + G LSV+V D S + S G+G+V++
Sbjct: 139 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 195
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIK 123
DA +A+D +N LN K I + + + D R G N+++K
Sbjct: 196 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 254
Query: 124 NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
NLD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 255 NLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIV 313
Query: 184 NDKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 314 ATKPLYVALAQRKEERQ 330
Score = 204 (76.9 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 496 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 552
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 553 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 581
Score = 195 (73.7 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 113
Query: 373 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 114 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 148
Score = 100 (40.3 bits), Expect = 9.7e-19, Sum P(2) = 9.7e-19
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 221 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 280
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 281 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 337
Query: 122 IKNL 125
++ +
Sbjct: 338 MQRM 341
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 1093 (389.8 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
Identities = 208/374 (55%), Positives = 289/374 (77%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
+SLYVGDL +VT++ LY++FS +G +LS+RVCRD++TRRSLGY Y+N+ PADA RALD
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
+NF + + IRIM+SHRDP +R+SG GNIFIKNL+ SID+KAL+DTFS+FG+ILS K+
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTK 207
+ G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF +Q+RE A
Sbjct: 131 VYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALG 189
Query: 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
F N++VKNL ++ L+ +F ++G S VMRD +G+S+ FGF+NFE ++A KAV+
Sbjct: 190 FTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVD 249
Query: 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+NGK+ + YVG+AQK++ER+ ELK +FEQ +E +++QG+NLY+KNL DSI+D++
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDR 309
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
LKE+FS +G ITS KVM + S SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+A
Sbjct: 310 LKEVFSTYGVITSAKVMTESSH-SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 388 QRKEERRARLQAQF 401
QRKEER+A L Q+
Sbjct: 369 QRKEERKAILTNQY 382
Score = 426 (155.0 bits), Expect = 8.8e-55, Sum P(2) = 8.8e-55
Identities = 96/288 (33%), Positives = 166/288 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+ A+ A+D
Sbjct: 12 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I + + + R+ ++ N+F+KNL+ S ++ L F +G+I S
Sbjct: 72 MNFEMIKGQPIRI----MWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
+ V+ + G S+ FGFV+FE + A KA+ +NG +DR+ +VG + + +RE EL +
Sbjct: 128 SKVVYNEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
A+ T N+Y+KNL +D++ L++LFS+FG S KVMRD +G S+G GF+
Sbjct: 187 ---ALGFT-------NIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFI 236
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
F EEA +A+ MNGK + + LYV AQ++ ER+ L+ +F QM+
Sbjct: 237 NFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMK 284
Score = 408 (148.7 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
Identities = 100/304 (32%), Positives = 160/304 (52%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +L+ ++ + LYD FS G +LS +V + R G+ + A A ++
Sbjct: 100 NIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMN 159
Query: 90 --VLNFTPLNNKSIRIMYSHR-DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
+LN + + + R G NI++KNL +D + L D FS FG S
Sbjct: 160 GMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQS 219
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 206
K+ D +GQS+GFGF+ FE E AQ A+D +NG ++ + ++VG ++ ER+ +K
Sbjct: 220 VKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQN-ELKR 278
Query: 207 KFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGF 253
+F N++VKNLD+S D+ LK++F YG ITSA VM + SK FGF
Sbjct: 279 RFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS-HSKGFGF 337
Query: 254 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV-DKFQGL 312
V F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ + + +V FQ
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRRLSRSVLSSFQQP 397
Query: 313 NLYI 316
Y+
Sbjct: 398 TSYL 401
Score = 157 (60.3 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
Identities = 33/72 (45%), Positives = 49/72 (68%)
Query: 499 LSTALANASP-EQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALK 557
L+ ++ +A+P +Q+ ++GE LY L+ K+TGMLLEMD E+L LLESPE+L
Sbjct: 526 LTVSMLDAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLH 585
Query: 558 AKVAEAMEVLRS 569
AK EA+ VL++
Sbjct: 586 AKAEEAVAVLKA 597
Score = 125 (49.1 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
Identities = 29/105 (27%), Positives = 59/105 (56%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84
N++ +LYV +LD ++ D +L ++FS G + S +V + S S G+G+V +++P +A
Sbjct: 289 NRYQGVNLYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS--HSKGFGFVCFSSPEEA 346
Query: 85 ARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI 129
+A+ +N + K + + + R RK+ N + + L +S+
Sbjct: 347 TKAVTEMNGRIVGTKPLYVALAQRKEE-RKAILTNQYRRRLSRSV 390
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 1026 (366.2 bits), Expect = 5.1e-123, Sum P(2) = 5.1e-123
Identities = 207/392 (52%), Positives = 277/392 (70%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLG 320
DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 243 DAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
D IDDE+L++ FS FGTITS KVM + G SKG GFV FS + + A N + +
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSYMQRMASVRAVPNPVINPYQ 361
Query: 381 PL-----YVAVAQRKEERRARLQ-AQFSQMRP 406
P ++A + + R A +Q +Q+RP
Sbjct: 362 PAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRP 393
Score = 482 (174.7 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 111/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 177 KEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 284
Score = 210 (79.0 bits), Expect = 2.9e-30, Sum P(2) = 2.9e-30
Identities = 68/200 (34%), Positives = 103/200 (51%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR-RSLGYA-YVNFQQPADAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNKA 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +MNG ++ + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ ++ER A L A+ + V
Sbjct: 174 KSRKEREAELGARAKEFTNV 193
Score = 204 (76.9 bits), Expect = 5.1e-123, Sum P(2) = 5.1e-123
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 501 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 557
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 558 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 586
Score = 113 (44.8 bits), Expect = 4.4e-20, Sum P(2) = 4.4e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 72 (30.4 bits), Expect = 8.2e-16, Sum P(2) = 8.2e-16
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 266 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 325
Query: 62 CRDLSTRRSLGYGYV--NYANPADAARAL 88
+ RS G+G+V +Y + RA+
Sbjct: 326 M--MEGGRSKGFGFVCFSYMQRMASVRAV 352
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 1090 (388.8 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 218/377 (57%), Positives = 276/377 (73%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
+++SLYVGDL V++ L+++F+QVG V ++RVCRD +TRRSL Y YVNY N ADA RA
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
LD LN TP+ K+ RIM+S RDPS+RKSG GN+FIKNLDK IDHKAL+DTFS+FGNILSC
Sbjct: 68 LDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC 127
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 207
K+ TD SKGFGFV +E +ESA AI K+NGM+IN ++VFVG F +ER + K
Sbjct: 128 KVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPT-EVK 186
Query: 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
F NVF KNL E + LK++ +YG IT+ +M D GKSK FGF NFE+A+ A VE
Sbjct: 187 FTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVE 246
Query: 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
NGK F + Y G+AQKK ERE ELK FE K+QG+NLYIKN+ DSID++K
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFET-------KYQGVNLYIKNIDDSIDNDK 299
Query: 328 LKELFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
L+E+FS+FGTITS VM+D SKG GFV ++ P+EA+RA+ EMNG+MI +KPLYVA+
Sbjct: 300 LREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVAL 359
Query: 387 AQRKEERRARLQAQFSQ 403
AQRK+ RRA+L+ Q Q
Sbjct: 360 AQRKDIRRAQLEMQHQQ 376
Score = 424 (154.3 bits), Expect = 9.9e-52, Sum P(2) = 9.9e-52
Identities = 93/283 (32%), Positives = 154/283 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++++ +LD + LYD FS G +LS +V D S G+G+V+Y A +A+
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAK 157
Query: 91 LNFTPLNNKSIRI----MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
+N +N + + + R T N+F KNL + + L + +G I +
Sbjct: 158 VNGMMINGQKVFVGPFKSSKERGQPTEVKFT-NVFFKNLSEDVGPDQLKELLQQYGEITN 216
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV---A 203
I D G+SKGFGF FE+ E+A+N ++ NG + + K ++ G +K ERE
Sbjct: 217 ITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHT 276
Query: 204 IKTKFN--NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENAD 260
+TK+ N+++KN+D+S ++ L+++F ++GTITSA+VM+D SK FGFV + D
Sbjct: 277 FETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPD 336
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK 303
+A +AV +NG+ + YV AQ+K R +L+ Q +Q K
Sbjct: 337 EATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFK 379
Score = 230 (86.0 bits), Expect = 7.0e-25, Sum P(2) = 7.0e-25
Identities = 63/199 (31%), Positives = 107/199 (53%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVE 267
++++V +L +++ L +IF + G +++ V RD + + S + +VN+ N DA +A++
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 268 ALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
LN GKA + S+R+ L+ K V N++IKNL ID
Sbjct: 70 TLNNTPIR------GKACRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKGIDH 111
Query: 326 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385
+ L + FS FG I SCKV+ D SKG GFV + T E A +A+A++NG MI + ++V
Sbjct: 112 KALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG 171
Query: 386 VAQRKEERRARLQAQFSQM 404
+ +ER + +F+ +
Sbjct: 172 PFKSSKERGQPTEVKFTNV 190
Score = 130 (50.8 bits), Expect = 5.8e-122, Sum P(2) = 5.8e-122
Identities = 38/116 (32%), Positives = 59/116 (50%)
Query: 457 GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALST-ALANA-SPEQQRTL 514
G+ Q+ P +G+ P+PV + +AL+ ++ N S +QQ
Sbjct: 450 GQPRQNGPRPDVSGAQ-PIPVQQQTTLDVAQTQQAASSAESALNLQSIINLPSRDQQNVA 508
Query: 515 LGESLYPLVEQLERDAAAKVTGMLLE-MDQTEVLHLLESPEALKAKVAEAMEVLRS 569
LGE LYPL+ + D A K+TGMLL+ + E+ L + + L K+ EA+EVL S
Sbjct: 509 LGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIREALEVLGS 564
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 999 (356.7 bits), Expect = 7.4e-122, Sum P(2) = 7.4e-122
Identities = 196/380 (51%), Positives = 268/380 (70%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
V A A+ +Q + SLYVG+LD +VT++ LY+LFS +GQV S+RVCRD TRRSLGY YVN
Sbjct: 30 VEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVN 89
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
Y + A RALD LN+T + K RIM+S RDP++RK+G GN+FIKNLD +ID+KALHDT
Sbjct: 90 YNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDT 149
Query: 138 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197
F++FGNILSCK+A D G SKG+GFV +E E+A NAI +NGML+NDK+VFVGH + K+
Sbjct: 150 FAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKK 209
Query: 198 ERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
+R++ +K F N+++KN+D DE+ +K+F ++G ITSA + RD +GKS+ FGFVN
Sbjct: 210 DRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVN 269
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 315
F + A AVE +N K+ ++ YVG+AQKK ERE+EL+ Q+E A E K+QG+NLY
Sbjct: 270 FSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLY 329
Query: 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NG 374
+KNL D +DD+KL+ELF +GTITS KVMRD + + +TPE ++ A N
Sbjct: 330 VKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVET-------ATPESETKESANKENE 382
Query: 375 KMIVSKPLYVAVAQRKEERR 394
K + A + KEE++
Sbjct: 383 KAAEGEKEPAAEEKEKEEKK 402
Score = 450 (163.5 bits), Expect = 8.0e-63, Sum P(2) = 8.0e-63
Identities = 106/315 (33%), Positives = 170/315 (53%)
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
N TP N + + + + + ++++ LD S+ L++ FSS G + S ++
Sbjct: 16 NGTPDNAPAPEVTAVEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCR 75
Query: 152 DG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 210
D + +S G+ +V + + + A+D+LN LI K + +R+ KT N
Sbjct: 76 DAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRI----MWSQRDPALRKTGQGN 131
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
VF+KNLD + ++ L F +G I S V +D G SK +GFV++E A+ A A++ +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G +D++ +VG K +R+ + FE+ MK N+YIKN+ ++DE+ ++
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSK----FEE-MKANFT-----NIYIKNIDPEVEDEEFRK 241
Query: 331 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390
LF +FG ITS + RD G S+G GFV FST E A A+ EMN K + S+ LYV AQ+K
Sbjct: 242 LFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKK 301
Query: 391 EERRARLQAQFSQMR 405
ER L+ Q+ R
Sbjct: 302 HEREEELRKQYEAAR 316
Score = 220 (82.5 bits), Expect = 7.4e-122, Sum P(2) = 7.4e-122
Identities = 51/116 (43%), Positives = 72/116 (62%)
Query: 468 GAGSMLPVPVDMGAGIPRRDASVGQPMPITALST----ALANASPEQQRTLLGESLYPLV 523
G G + P+ M G R +VGQP P T + AL+ A P+QQ+ +LGE+LYP +
Sbjct: 600 GRGGV-PLGGQMRPGQGGRGQAVGQPGPETPVGVLTAQALSAAPPQQQKQMLGEALYPKI 658
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQANNPA 579
+ + + A K+TGMLLEMD TE+L LLE EAL+AKV EA+ V + +++ PA
Sbjct: 659 QATQPELAGKITGMLLEMDNTELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPA 714
Score = 173 (66.0 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 342 KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 399
K + P G SKG GFV FS+P+EAS+A+ EMN +M+ KPLYVA+AQRK+ RR++L+A
Sbjct: 407 KPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEA 464
Score = 108 (43.1 bits), Expect = 9.8e-24, Sum P(3) = 9.8e-24
Identities = 22/54 (40%), Positives = 33/54 (61%)
Query: 246 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 299
GKSK FGFV F + D+A+KAV +N + + + YV AQ+K R +L+ +
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQ 467
Score = 95 (38.5 bits), Expect = 2.2e-22, Sum P(3) = 2.2e-22
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 155 GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET---VAIKTKFNNV 211
G+SKGFGFV F + + A A+ ++N ++N K ++V RK R + +I+ + NN+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQAR-NNI 472
Score = 68 (29.0 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ + + + ++ A +++ +LYV +L +V D +L +LF G + S +V
Sbjct: 298 AQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKV 357
Query: 62 CRD 64
RD
Sbjct: 358 MRD 360
Score = 68 (29.0 bits), Expect = 1.3e-19, Sum P(3) = 1.3e-19
Identities = 13/47 (27%), Positives = 30/47 (63%)
Query: 69 RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKS 115
+S G+G+V +++P +A++A+ +N +N K + + + R +R+S
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK-DVRRS 460
Score = 47 (21.6 bits), Expect = 1.4e-103, Sum P(2) = 1.4e-103
Identities = 16/50 (32%), Positives = 17/50 (34%)
Query: 449 GHAYRYPL---GRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 495
G AY P G Q F G M P M G+P R P P
Sbjct: 484 GQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQPGMMMGMPGRPGQYPGPFP 533
Score = 45 (20.9 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 293 ELKGQFE--QAMKETVDKFQGL-NLYIKNLGDSIDDEKLKELFSE 334
EL G E +A++ VD+ + + Y+KN D EK KE E
Sbjct: 680 ELLGLLEDDEALRAKVDEALSVYDEYMKNKSDEPAAEKPKEAAQE 724
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 1054 (376.1 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 211/385 (54%), Positives = 279/385 (72%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
+G+ + SLYVGDL +V +S L++ FS G VLS+RVCRD +TR SLGY YVN+ PA
Sbjct: 25 TGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPA 84
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RA+D +NF L+ K +RIM+S RDP++R+SG GNIFIKNLDK ID+K+++DTFS FG
Sbjct: 85 DAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFG 144
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
NILSCK+A D G SKG+GFV FE +E+AQNAI K+NGML+ K+VFVG F + +R
Sbjct: 145 NILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRE 204
Query: 203 AIKT--KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+T +F NV+VKN + E L+K+F ++G ITS VM +GKSK FGFV F N +
Sbjct: 205 LGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPE 263
Query: 261 DAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 318
+A AV+AL+ + D + +V +AQKKSER ELK + EQ E + K+QG+NLY+KN
Sbjct: 264 EAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKN 323
Query: 319 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378
L +++DD+ LK+ F +G ITS KVM D +G SKG GFV F PEEA+ A+ EMN KM+
Sbjct: 324 LDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVC 383
Query: 379 SKPLYVAVAQRKEERRARLQAQFSQ 403
SKPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 384 SKPLYVAIAQRKEDRRAQLASQYMQ 408
Score = 410 (149.4 bits), Expect = 2.7e-51, Sum P(2) = 2.7e-51
Identities = 98/294 (33%), Positives = 164/294 (55%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 177
++++ +L ++ L + FS+ G +LS ++ D + + S G+ +V F+ A+ A+D
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N ++ K + + +R+ ++ N+F+KNLD+ ++ + F +G I S
Sbjct: 93 MNFEALHGKPMRI----MWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILS 148
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V D DG SK +GFV+FE + A A++ +NG ++ +VGK Q +++R +EL G
Sbjct: 149 CKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNREL-G- 206
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
ET +F N+Y+KN GD + E L++LF++FG ITSC+VM G SKG GFV
Sbjct: 207 ------ETAKQFT--NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT-VEGKSKGFGFV 257
Query: 358 AFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQMRPVAM 409
AF+ PEEA A+ ++ I L+V AQ+K ER A L+ + Q + M
Sbjct: 258 AFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERM 311
Score = 328 (120.5 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 78/198 (39%), Positives = 109/198 (55%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
N+++KN + + L F+ FGNI SC++ T G+SKGFGFV F N E A+ A+ L
Sbjct: 214 NVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTV-EGKSKGFGFVAFANPEEAETAVQAL 272
Query: 179 NGMLIN--DKQVFVGHFLRKQERETVAIKT----------KFN--NVFVKNLDESTTDED 224
+ I D ++ V +K ER K K+ N++VKNLDE+ D+
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 225 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284
LKK F YG ITSA VM D +G+SK FGFV FE ++A AV +N K + YV A
Sbjct: 333 LKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIA 392
Query: 285 QKKSEREQELKGQFEQAM 302
Q+K +R +L Q+ Q +
Sbjct: 393 QRKEDRRAQLASQYMQRL 410
Score = 164 (62.8 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 39/88 (44%), Positives = 60/88 (68%)
Query: 490 VGQPMPITALSTALANASPEQQRTLLGESLYPLVEQL---ERDAAAKVTGMLLEMDQTEV 546
+G P+T S LA A+P++Q+ LLGE +Y L+E+L +DA K+TGM+LE+D +E+
Sbjct: 563 IGGQEPLT--SAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAG-KITGMMLEIDNSEL 619
Query: 547 LHLLESPEALKAKVAEAMEVLRSVAQQQ 574
+ +L+ E ++KV EA VL S AQ+Q
Sbjct: 620 IMMLQDSELFRSKVDEAASVLVS-AQKQ 646
Score = 115 (45.5 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
Identities = 28/97 (28%), Positives = 49/97 (50%)
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 357
+ +T + +LY+ +L +++ L E FS G + S +V RD + +S G +V
Sbjct: 19 QPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYV 78
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
F P +A RA+ MN + + KP+ + +QR R
Sbjct: 79 NFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMR 115
Score = 100 (40.3 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 29/124 (23%), Positives = 57/124 (45%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ + + A++ + ++ +LYV +LD V D L F G + S +V
Sbjct: 289 AQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKV 348
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
D RS G+G+V + P +A A+ +N + +K + + + R R++ + +
Sbjct: 349 MTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKED-RRAQLASQY 406
Query: 122 IKNL 125
++ L
Sbjct: 407 MQRL 410
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 1049 (374.3 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 213/394 (54%), Positives = 280/394 (71%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RV RD +TRRSLGY VN+
Sbjct: 4 SDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLE 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIF+KNLD+SID K L+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG 123
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET- 201
NILSCK+ D +G SKG+GFV FE +E A+ AI+K+NGM +ND++VFVG F +++R+
Sbjct: 124 NILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAE 182
Query: 202 VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + K F NV++KNL E DE L+ +F +G S VM D GKSK FGFV+FE +
Sbjct: 183 LGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHE 242
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKF----------- 309
DA KAV+ +NGK + ++ YVG+AQKK ER+ ELK +F Q MK+ K
Sbjct: 243 DARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ-MKQDKPKIEQVPQDRSVRC 301
Query: 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 369
QG+NLY+KNL D IDDE+L++ FS FGTITS KV + G SKG GFV FS+PEEA++A+
Sbjct: 302 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTME-GGRSKGFGFVCFSSPEEATKAV 360
Query: 370 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403
EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 361 TEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQ 394
Score = 477 (173.0 bits), Expect = 2.0e-61, Sum P(2) = 2.0e-61
Identities = 112/298 (37%), Positives = 173/298 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + + S G+ V F+
Sbjct: 2 NPSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
E A+ A+D +N +I K V + +R+ K+ N+FVKNLD S + L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYD 117
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
F +G I S V+ D +G SK +GFV+FE ++A +A+E +NG +DR+ +VG+ + +
Sbjct: 118 TFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
+R+ EL + KE N+YIKNLG+ +DDE+L++LFS FG S KVM D
Sbjct: 177 RDRQAELGAR----AKEFT------NVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE 226
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 227 SGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMK 284
Score = 212 (79.7 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 45/96 (46%), Positives = 61/96 (63%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N++VKNLD+ DE L+K F +GTITSA V +G G+SK FGFV F + ++A KAV +
Sbjct: 305 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG-GRSKGFGFVCFSSPEEATKAVTEM 363
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 305
NG+ + YV AQ+K ER+ L Q+ Q M T
Sbjct: 364 NGRIVATKPLYVALAQRKEERQAHLSNQYMQRMAST 399
Score = 205 (77.2 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 66/200 (33%), Positives = 101/200 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
+++V +L T+ L + F G I S V RD + + G+ + N A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTR-RSLGYASV-NFQQLEDAERAL 69
Query: 270 NGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+ FD + GK + S+R+ L+ K V N+++KNL SID +
Sbjct: 70 DTMNFDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFVKNLDRSIDSKT 114
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L + FS FG I SCKV+ D +G SKG GFV F T EEA RA+ +MNG + + ++V
Sbjct: 115 LYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRF 173
Query: 388 QRKEERRARLQAQFSQMRPV 407
+ + +R+A L A+ + V
Sbjct: 174 KSRRDRQAELGARAKEFTNV 193
Score = 169 (64.5 bits), Expect = 9.4e-122, Sum P(2) = 9.4e-122
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 455 PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 514
P R + + + G + P ++ + + ++V + + LA+A P+ Q+ +
Sbjct: 510 PAARTVTQYKYTAGVRNP-PQHLNTQPQVTTQRSAVSAQGKESLTVSMLASAPPQAQKQM 568
Query: 515 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 574
LGE L+ L++ + A K+TGMLLE+D E+ H+LESPE L KV EA+ VL++ ++
Sbjct: 569 LGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKVDEAIAVLQAHQAKE 628
Query: 575 ANNPA 579
+ A
Sbjct: 629 TSQKA 633
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 1087 (387.7 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 213/400 (53%), Positives = 295/400 (73%)
Query: 11 QMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRS 70
Q + G ++G + N + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD +++S
Sbjct: 36 QSAEEQGESSGVAEN---SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKS 92
Query: 71 LGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSID 130
LGY YVNY D +A++ LN+ P+ + RIM+S RDPS R+SG GNIFIKNL +ID
Sbjct: 93 LGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAID 152
Query: 131 HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
+KALHDTFS+FG ILSCK+ATD GQSK FGFV +E E+A+ AI+ +NGML+ND++VFV
Sbjct: 153 NKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212
Query: 191 GHFLRKQERETV--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS 248
G + K++RE+ +K F N++VKN+D + ++E +K+F +G ITS + +D DGKS
Sbjct: 213 GKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKS 272
Query: 249 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 308
K FGFVNFE+ + A KAVE LN K+ + ++ YVG+AQKK ER +ELK Q+E E + K
Sbjct: 273 KGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAK 332
Query: 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 368
+QG+NL++KNL D+ID EKL+E F FGTITS KVM D +G SKG GFV F+TPEEA++A
Sbjct: 333 YQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKA 392
Query: 369 LAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF---SQMR 405
+ EMN +MI KPLYVA+AQRK+ RR++L+ Q +QMR
Sbjct: 393 ITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQARNQMR 432
Score = 119 (46.9 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 499 LSTALANASPEQQRTLLGESLYPLV----EQLERDAAAKVTGMLLEMDQTEVLHLLESPE 554
L+ +++ +QQ+ +LGE LYP + + E +AA K+TGM+L ++ E+L LL+ E
Sbjct: 541 LAAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDE 600
Query: 555 ALKAKVAEAMEVLRSVAQQQANNPADQLA 583
+A+ + +A A++ A
Sbjct: 601 LFNNHFEDALTAFEEYKKSEAAGNAEEQA 629
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 1045 (372.9 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 213/403 (52%), Positives = 284/403 (70%)
Query: 7 QHQAQMS-GPNGVAAGASGNQ-FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD 64
Q QA + GP G N + SLY+GDL +V+++ L++ FS G VLS+RVCRD
Sbjct: 32 QPQAVIQQGPPPTNIGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRD 91
Query: 65 LSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKN 124
++R SLGY YVN+ PADA RALD +NF ++ + +RIM+S RDP+ R++G GNIFIKN
Sbjct: 92 NTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKN 151
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
LD+ ID+K+++DTFS FGNILSCK+ATD G SKG+GFV FE + SAQ AI+K+NGML++
Sbjct: 152 LDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLS 211
Query: 185 DKQVFVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 242
DK+V+VG F + +R E K+ NVFVKN E E L +F ++G ITSAVVM
Sbjct: 212 DKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMT 271
Query: 243 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQFEQ 300
D GK K FGFV F + D A +AVE LN + D + V +AQKKSER ELK ++E
Sbjct: 272 DAQGKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEA 331
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
+E V ++QG+NLY+KN+ + ++D+ L++ FS FGTITS KVM D +G SKG GFV F
Sbjct: 332 LKQERVQRYQGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFE 391
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403
PEEA+ A+ +MN KMI +KPLYVA+AQRKE+RRA+L +Q+ Q
Sbjct: 392 KPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQ 434
Score = 415 (151.1 bits), Expect = 2.4e-52, Sum P(2) = 2.4e-52
Identities = 95/290 (32%), Positives = 161/290 (55%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 177
+++I +L + L + FS G +LS ++ D + + S G+ +V F+ A+ A+D
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I+ + + + +R+ A + N+F+KNLD ++ + F +G I S
Sbjct: 118 MNFEVIHGRPMRI----MWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILS 173
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V D +G SK +GFV+FE A A+E +NG D++ YVGK Q +++R +EL G
Sbjct: 174 CKVATDDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKEL-G- 231
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
E +K T N+++KN G+ +D EKL +FS+FG ITS VM D G KG GFV
Sbjct: 232 -ESGLKYT-------NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAV--AQRKEERRARLQAQFSQMR 405
AF+ + A +A+ ++N ++ ++V AQ+K ER A L+ ++ ++
Sbjct: 284 AFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALK 333
Score = 329 (120.9 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 74/199 (37%), Positives = 113/199 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
N+F+KN + +D + L FS FG I S + TD G+ KGFGFV F ++++A A++KL
Sbjct: 239 NVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 179 NGMLIN--DKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDE 223
N ++ D ++ V +K ER + +K K+ N++VKN++E D+
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSER-SAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDD 357
Query: 224 DLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 283
L+ F +GTITSA VM D +G+SK FGFV FE ++A AV +N K + YV
Sbjct: 358 GLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVAL 417
Query: 284 AQKKSEREQELKGQFEQAM 302
AQ+K +R +L Q+ Q +
Sbjct: 418 AQRKEDRRAQLASQYMQRL 436
Score = 156 (60.0 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 497 TALSTALANASPEQQRTLLGESLYPLVEQL--ERDAAAKVTGMLLEMDQTEVLHLLESPE 554
T S LA A+P++Q+ LLGE +Y L+E++ A K+TGM+LE+D E++ +L+ E
Sbjct: 603 TLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAE 662
Query: 555 ALKAKVAEAMEVLRSVAQQQANNPA 579
++KV EA VL + A+ A
Sbjct: 663 LFRSKVEEAFGVLTNAQSAAASTSA 687
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 721 (258.9 bits), Expect = 6.5e-120, Sum P(3) = 6.5e-120
Identities = 140/257 (54%), Positives = 193/257 (75%)
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 207
+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE + + K
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 156
Query: 208 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV
Sbjct: 157 EFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 216
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE
Sbjct: 217 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 276
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+
Sbjct: 277 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 335
Query: 387 AQRKEERRARLQAQFSQ 403
AQRKEER+A L Q+ Q
Sbjct: 336 AQRKEERQAHLTNQYMQ 352
Score = 448 (162.8 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 103/252 (40%), Positives = 147/252 (58%)
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIK 123
S GYG+V++ A RA++ +N LN++ + + R+ + R N++IK
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 124 NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
N + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +
Sbjct: 165 NFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 224
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFG 230
N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 225 NGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 283
Query: 231 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER
Sbjct: 284 PFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 342
Query: 291 EQELKGQFEQAM 302
+ L Q+ Q M
Sbjct: 343 QAHLTNQYMQRM 354
Score = 339 (124.4 bits), Expect = 6.7e-72, Sum P(3) = 6.7e-72
Identities = 75/166 (45%), Positives = 107/166 (64%)
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 299
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 98 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 154
Query: 300 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 359
KE N+YIKN G+ +DDE+LK+LF +FG S KVM D SG SKG GFV+F
Sbjct: 155 --AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSF 206
Query: 360 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 207 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 252
Score = 290 (107.1 bits), Expect = 6.5e-120, Sum P(3) = 6.5e-120
Identities = 55/94 (58%), Positives = 69/94 (73%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG 116
DA RALD +NF + K +RIM+S RDPS+RKSG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSG 97
Score = 269 (99.8 bits), Expect = 5.7e-37, Sum P(2) = 5.7e-37
Identities = 68/196 (34%), Positives = 108/196 (55%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + ++ D +L DLF + G LSV+V D S + S G+G+V++
Sbjct: 152 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 208
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSH----RDPSIRKSGT-----------G-NIFIKN 124
DA +A+D +N LN K I + + R +++ G N+++KN
Sbjct: 209 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 268
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
LD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 269 LDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 327
Query: 185 DKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 328 TKPLYVALAQRKEERQ 343
Score = 204 (76.9 bits), Expect = 6.5e-120, Sum P(3) = 6.5e-120
Identities = 42/89 (47%), Positives = 66/89 (74%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 509 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHML 565
Query: 551 ESPEALKAKVAEAMEVLRSVAQQQANNPA 579
ESPE+L++KV EA+ VL++ ++A A
Sbjct: 566 ESPESLRSKVDEAVAVLQAHQAKEAAQKA 594
Score = 113 (44.8 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
Score = 108 (43.1 bits), Expect = 3.2e-25, Sum P(3) = 3.2e-25
Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 321 DSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379
D I + ++ ++S+ ++ V+ D +G SKG GFV F T E A RA+ +MNG ++
Sbjct: 75 DVIKGKPVRIMWSQRDPSLRKSGVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLND 133
Query: 380 KPLYVAVAQRKEERRARLQAQFSQMRPV 407
+ ++V + ++ER A L A+ + V
Sbjct: 134 RKVFVGRFKSRKEREAELGARAKEFTNV 161
Score = 100 (40.3 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 234 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 293
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 294 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 350
Query: 122 IKNL 125
++ +
Sbjct: 351 MQRM 354
Score = 96 (38.9 bits), Expect = 1.4e-51, Sum P(3) = 1.4e-51
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQV 188
A+ A+D +N +I K V
Sbjct: 62 PADAERALDTMNFDVIKGKPV 82
Score = 71 (30.1 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 269 LN 270
+N
Sbjct: 72 MN 73
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 977 (349.0 bits), Expect = 8.5e-119, Sum P(2) = 8.5e-119
Identities = 188/322 (58%), Positives = 250/322 (77%)
Query: 84 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 143
A RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FGN
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 144 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-V 202
ILSCK+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE +
Sbjct: 61 ILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 119
Query: 203 AIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 261
+ K F NV++KN E DE LK++FG++G S VM D GKSK FGFV+FE +D
Sbjct: 120 GARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHED 179
Query: 262 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 321
A KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 322 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381
IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KP
Sbjct: 240 GIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 298
Query: 382 LYVAVAQRKEERRARLQAQFSQ 403
LYVA+AQRKEER+A L Q+ Q
Sbjct: 299 LYVALAQRKEERQAHLTNQYMQ 320
Score = 448 (162.8 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 108/290 (37%), Positives = 163/290 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA-RALD 89
++++ +LD ++ + LYD FS G +LS +V D + + G+ + A+ A ++
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 95
Query: 90 --VLNFTPLNNKSIRIMYSHRDPSI--RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+LN + + R+ + R N++IKN + +D + L + F FG L
Sbjct: 96 GMLLNDRKVFVGRFKSR-KEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 154
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG +K ER+T +K
Sbjct: 155 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELK 213
Query: 206 TKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
KF N++VKNLD+ DE L+K F +GTITSA VM +G G+SK FG
Sbjct: 214 RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFG 272
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
FV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q M
Sbjct: 273 FVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRM 322
Score = 420 (152.9 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 97/235 (41%), Positives = 142/235 (60%)
Query: 171 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 230
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L F
Sbjct: 1 AERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS 56
Query: 231 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290
+G I S V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ER
Sbjct: 57 AFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 115
Query: 291 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
E EL + KE N+YIKN G+ +DDE+LKELF +FG S KVM D SG
Sbjct: 116 EAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK 165
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 166 SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 220
Score = 268 (99.4 bits), Expect = 6.4e-38, Sum P(2) = 6.4e-38
Identities = 68/197 (34%), Positives = 107/197 (54%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + ++ D +L +LF + G LSV+V D S + S G+G+V++
Sbjct: 120 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFER 176
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSHR-----------------DPSIRKSGTGNIFIK 123
DA +A+D +N LN K I + + + D R G N+++K
Sbjct: 177 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVK 235
Query: 124 NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
NLD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 236 NLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIV 294
Query: 184 NDKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 295 ATKPLYVALAQRKEERQ 311
Score = 213 (80.0 bits), Expect = 8.5e-119, Sum P(2) = 8.5e-119
Identities = 45/93 (48%), Positives = 68/93 (73%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 478 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 534
Query: 551 ESPEALKAKVAEAMEVLRS-----VAQQQANNP 578
ESPE+L++KV EA+ VL++ AQ+ NNP
Sbjct: 535 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 567
Score = 195 (73.7 bits), Expect = 9.9e-30, Sum P(2) = 9.9e-30
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E A RA+ +M
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKM 94
Query: 373 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 95 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 129
Score = 100 (40.3 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 202 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 261
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 262 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 318
Query: 122 IKNL 125
++ +
Sbjct: 319 MQRM 322
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 974 (347.9 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 191/328 (58%), Positives = 249/328 (75%)
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+A A RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DT
Sbjct: 99 HATGGTAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 158
Query: 138 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197
FS+FGNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++
Sbjct: 159 FSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 217
Query: 198 ERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
ERE + K K F NV++KN E DE LK++F ++G S VMRD GKSK FGFV+
Sbjct: 218 EREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVS 277
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLY 315
+E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLY
Sbjct: 278 YEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLY 337
Query: 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 375
IKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+
Sbjct: 338 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGR 396
Query: 376 MIVSKPLYVAVAQRKEERRARLQAQFSQ 403
++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 397 IVGSKPLYVALAQRKEERKAHLTNQYMQ 424
Score = 457 (165.9 bits), Expect = 1.5e-62, Sum P(2) = 1.5e-62
Identities = 105/289 (36%), Positives = 166/289 (57%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++++ +LD ++ + LYD FS G +LS +V D S GY +V++ A +A++
Sbjct: 140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEK 197
Query: 91 LNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHDTFSSFGNI 144
+N LN++ + + + R + G N++IKN + +D ++L + FS FG
Sbjct: 198 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 257
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
LS K+ D SG+SKGFGFV +E E A A++++NG I+ K +FVG +K ER+ +
Sbjct: 258 LSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA-EL 316
Query: 205 KTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251
K KF N+++KNLD++ DE L+K F +G+ITSA VM + DG+SK F
Sbjct: 317 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGF 375
Query: 252 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
GFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q
Sbjct: 376 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 424
Score = 434 (157.8 bits), Expect = 7.5e-60, Sum P(2) = 7.5e-60
Identities = 99/236 (41%), Positives = 146/236 (61%)
Query: 170 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
+A+ A+D +N +I K + + +R+ K+ NVF+KNLD+S ++ L F
Sbjct: 104 TAERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF 159
Query: 230 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289
+G I S V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + E
Sbjct: 160 SAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKE 218
Query: 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
RE EL + KE N+YIKN G+ +DDE LKELFS+FG S KVMRDPSG
Sbjct: 219 REAELGAK----AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG 268
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SKG GFV++ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 269 KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLK 324
Score = 271 (100.5 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
Identities = 69/196 (35%), Positives = 110/196 (56%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + V D L +LFSQ G+ LSV+V RD S + S G+G+V+Y
Sbjct: 224 GAKAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGK-SKGFGFVSYEK 280
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSH----RDPSIRKSGT-----------G-NIFIKN 124
DA +A++ +N ++ K I + + R +++ G N++IKN
Sbjct: 281 HEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 340
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
LD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 341 LDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 399
Query: 185 DKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 400 SKPLYVALAQRKEERK 415
Score = 207 (77.9 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 578 PYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 635
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 636 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAV 695
Query: 583 AS 584
A+
Sbjct: 696 AA 697
Score = 185 (70.2 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 198
Query: 373 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 199 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 233
Score = 115 (45.5 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 306 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 365
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 366 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 422
Query: 122 IKNL 125
++ +
Sbjct: 423 MQRV 426
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 1062 (378.9 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
Identities = 208/383 (54%), Positives = 287/383 (74%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAAR-A 87
+ SLYVGDL+ +V+++ LYD+FS +G V S+RVCRD T+ SLGY YVN+ N +A R A
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF-NDHEAGRKA 95
Query: 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
++ LN+TP+ + RIM+S RDPS+RK G+GNIFIKNL ID+KAL+DTFS FG+ILS
Sbjct: 96 IEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSS 155
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 207
KIATD +G+SKGFGFV FE + +A+ AID LNGML+N ++++V L ++ER++ +TK
Sbjct: 156 KIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETK 215
Query: 208 --FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
+ N++VKN++ TTDE +++F ++G I SA + +D DGK K FGFVN+E +DA KA
Sbjct: 216 AHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKA 275
Query: 266 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
VEALN + + + YVG+AQKK+ER LK Q+E E + K+QG+NL++KNL DS+DD
Sbjct: 276 VEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDD 335
Query: 326 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385
EKL+E F+ +GTITS KVMR +G SKG GFV FSTPEEA++A+ E N +++ KPLYVA
Sbjct: 336 EKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVA 395
Query: 386 VAQRKEERRARLQAQF---SQMR 405
+AQRK+ RR++L Q +QMR
Sbjct: 396 IAQRKDVRRSQLAQQIQARNQMR 418
Score = 390 (142.3 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
Identities = 93/293 (31%), Positives = 156/293 (53%)
Query: 114 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 172
++ + ++++ +L+ S+ L+D FS G++ S ++ D + S G+ +V F + E+ +
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 173 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 232
AI++LN I + + +R+ K N+F+KNL ++ L F +
Sbjct: 94 KAIEQLNYTPIKGRLCRI----MWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVF 149
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 292
G I S+ + D +GKSK FGFV+FE A +A++ALNG + +E YV + ER+
Sbjct: 150 GDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDS 209
Query: 293 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 352
+L+ ET K NLY+KN+ DE+ +ELF++FG I S + +D G K
Sbjct: 210 QLE--------ET--KAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLK 259
Query: 353 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
G GFV + E+A +A+ +N + + LYV AQ+K ER L+ Q+ R
Sbjct: 260 GFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYR 312
Score = 215 (80.7 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 61/200 (30%), Positives = 103/200 (51%)
Query: 200 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC-FGFVNFEN 258
E+ +++ +++V +L+ S ++ L IF G+++S V RD K+ + +VNF +
Sbjct: 29 ESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 88
Query: 259 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 318
+ KA+E LN R + S+R+ L+ K G N++IKN
Sbjct: 89 HEAGRKAIEQLNYTPIKGRLCRI----MWSQRDPSLR-----------KKGSG-NIFIKN 132
Query: 319 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378
L ID++ L + FS FG I S K+ D +G SKG GFV F A A+ +NG ++
Sbjct: 133 LHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALNGMLLN 192
Query: 379 SKPLYVAVAQRKEERRARLQ 398
+ +YVA ++ER ++L+
Sbjct: 193 GQEIYVAPHLSRKERDSQLE 212
Score = 106 (42.4 bits), Expect = 1.8e-116, Sum P(2) = 1.8e-116
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 509 EQQRTLLGESLYPLV--EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEV 566
++QR LGE LY V + +AA K+TGM+L++ EV LLES E + EA
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 567 LRSVAQQQ 574
S ++Q
Sbjct: 563 YESFKKEQ 570
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 948 (338.8 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 184/315 (58%), Positives = 243/315 (77%)
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
+NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+FGNILSCK+
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVV 60
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK-F 208
D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE + K K F
Sbjct: 61 CDENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 119
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
NV++KN E DE+L+++F ++G S VMRD GKSK FGFV++E +DA KAVE
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
+NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQ
Sbjct: 240 RKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ 298
Query: 389 RKEERRARLQAQFSQ 403
RKEER+A L Q+ Q
Sbjct: 299 RKEERKAHLTNQYMQ 313
Score = 453 (164.5 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 104/289 (35%), Positives = 165/289 (57%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++++ +LD ++ + LYD FS G +LS +V D S GY +V++ A +A++
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAANKAIEK 86
Query: 91 LNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHDTFSSFGNI 144
+N LN++ + + + R + G N++IKN + +D + L + FS FG
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 146
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
LS K+ D SG+SKGFGFV +E E A A++++NG ++ K +FVG +K ER+ +
Sbjct: 147 LSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA-EL 205
Query: 205 KTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251
K KF N+++KNLD++ DE L+K F +G+ITSA VM + DG+SK F
Sbjct: 206 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGF 264
Query: 252 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
GFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q
Sbjct: 265 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 313
Score = 407 (148.3 bits), Expect = 1.4e-55, Sum P(2) = 1.4e-55
Identities = 90/208 (43%), Positives = 132/208 (63%)
Query: 198 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 257
+R+ K+ NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE
Sbjct: 17 QRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFE 75
Query: 258 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 317
+ A KA+E +NG +DR+ +VG+ + + ERE EL + KE N+YIK
Sbjct: 76 TQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIK 125
Query: 318 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
N G+ +DDE L+ELFS+FG S KVMRD SG SKG GFV++ E+A++A+ EMNGK +
Sbjct: 126 NFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKEM 185
Query: 378 VSKPLYVAVAQRKEERRARLQAQFSQMR 405
K ++V AQ+K ER+A L+ +F Q++
Sbjct: 186 SGKSIFVGRAQKKVERQAELKRKFEQLK 213
Score = 279 (103.3 bits), Expect = 3.4e-38, Sum P(2) = 3.4e-38
Identities = 70/196 (35%), Positives = 111/196 (56%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + V D L +LFSQ G+ LSV+V RD S + S G+G+V+Y
Sbjct: 113 GAKAKEF--TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGK-SKGFGFVSYEK 169
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSH----RDPSIRKSGT-----------G-NIFIKN 124
DA +A++ +N ++ KSI + + R +++ G N++IKN
Sbjct: 170 HEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 229
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
LD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 230 LDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 288
Query: 185 DKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 289 SKPLYVALAQRKEERK 304
Score = 204 (76.9 bits), Expect = 8.7e-115, Sum P(2) = 8.7e-115
Identities = 45/112 (40%), Positives = 73/112 (65%)
Query: 474 PVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAK 533
P P P+ V P+TA + LA A P++Q+ +LGE L+PL++ + + A K
Sbjct: 476 PSPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGK 533
Query: 534 VTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQLAS 584
+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +A+
Sbjct: 534 ITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTVAA 585
Score = 186 (70.5 bits), Expect = 9.9e-28, Sum P(2) = 9.9e-28
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A++A+ +M
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAANKAIEKM 87
Query: 373 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 88 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 122
Score = 115 (45.5 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 195 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 254
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 255 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 311
Query: 122 IKNL 125
++ +
Sbjct: 312 MQRV 315
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 889 (318.0 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 175/383 (45%), Positives = 263/383 (68%)
Query: 20 AGASGNQF-LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNY 78
A +SG+ +T SLYVGDL +VT+ LYD F++ + SVR+C+D S+ RSL YGY N+
Sbjct: 13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANF 72
Query: 79 ANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 138
+ DA A++ N + LN K IR+M+S R P R++G GN+F+KNL +S+ + L D F
Sbjct: 73 LSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMF 132
Query: 139 SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 198
FGNI+SCK+AT G+S+G+GFVQFE +++A AI LN ++ DK+++VG F++K +
Sbjct: 133 KKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTD 192
Query: 199 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFEN 258
R V + K+ N+++KNLD +++ L++ F E+G I S + +D + + + FVNF+N
Sbjct: 193 R--VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDN 250
Query: 259 ADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 318
+DA +A E +NG KF + YVG+AQKK+EREQ L+ QF++ +E + N+Y+KN
Sbjct: 251 PEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKN 310
Query: 319 LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378
+ ++ +E+L++ FS+ GTITS K+M D G SKG GFV FSTPEEA A+ +G+M
Sbjct: 311 VNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFH 370
Query: 379 SKPLYVAVAQRKEERRARLQAQF 401
KPLYVA+AQ+KE+R+ +LQ QF
Sbjct: 371 GKPLYVAIAQKKEDRKMQLQVQF 393
Score = 336 (123.3 bits), Expect = 7.1e-42, Sum P(2) = 7.1e-42
Identities = 80/194 (41%), Positives = 112/194 (57%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVFVKNL ES T+ L+ +F ++G I S V DGKS+ +GFV FE D A A++ L
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N D+E YVGK KK++R +K + +K+ NLY+KNL + ++ L+
Sbjct: 173 NSTIVADKEIYVGKFMKKTDR---VKPE---------EKYT--NLYMKNLDADVSEDLLR 218
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
E F+EFG I S + +D + + +G FV F PE+A RA +NG SK LYV AQ+
Sbjct: 219 EKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQK 278
Query: 390 KEERRARLQAQFSQ 403
K ER L+ QF +
Sbjct: 279 KAEREQLLREQFKE 292
Score = 175 (66.7 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 49/115 (42%), Positives = 63/115 (54%)
Query: 456 LGRNMQDF-PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTL 514
L RN + P + MLP+ D R G+ M + E Q L
Sbjct: 471 LDRNAVSYVPNVYQSTQMLPLSRDFSKQQHSRTYGRGKEMKKSIQQRQSETVGMEMQ--L 528
Query: 515 LGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 569
LGE L+PLVE+LE A K+TGMLLEMD++E+L LL+SPE L +V EA EVL+S
Sbjct: 529 LGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKS 583
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 858 (307.1 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 168/287 (58%), Positives = 222/287 (77%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
N+FIKNLDKSID+KAL+DTFS+FGNILSCK+ D +G SKG+ FV FE +E+A AI+K+
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 179 NGMLINDKQVFVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTIT 236
NGML+ND++VFVG F ++ERE + K K F NV++KN E DE LK++F ++G
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 120
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 296
S VMRD +GKSK FGFV++E +DA KAVE +NGK+ + +VG+AQKK ER+ ELK
Sbjct: 121 SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKR 180
Query: 297 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 356
+FEQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SKG GF
Sbjct: 181 KFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGF 239
Query: 357 VAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403
V FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 240 VCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 286
Score = 453 (164.5 bits), Expect = 8.8e-63, Sum P(2) = 8.8e-63
Identities = 104/289 (35%), Positives = 166/289 (57%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++++ +LD ++ + LYD FS G +LS +V D S GY +V++ A +A++
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEK 59
Query: 91 LNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIKNLDKSIDHKALHDTFSSFGNI 144
+N LN++ + + + R + G N++IKN + +D ++L + FS FG
Sbjct: 60 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 119
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
LS K+ D +G+SKGFGFV +E E A A++++NG I+ K +FVG +K ER+ +
Sbjct: 120 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA-EL 178
Query: 205 KTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251
K KF N+++KNLD++ DE L+K F +G+ITSA VM + DG+SK F
Sbjct: 179 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGF 237
Query: 252 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
GFV F + ++A KAV +NG+ + YV AQ+K ER+ L Q+ Q
Sbjct: 238 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 286
Score = 413 (150.4 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 90/196 (45%), Positives = 128/196 (65%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVF+KNLD+S ++ L F +G I S V+ D +G SK + FV+FE + A KA+E +
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
NG +DR+ +VG+ + + ERE EL + KE N+YIKN G+ +DDE LK
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAK----AKEFT------NVYIKNFGEEVDDESLK 110
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
ELFS+FG S KVMRDP+G SKG GFV++ E+A++A+ EMNGK I K ++V AQ+
Sbjct: 111 ELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 170
Query: 390 KEERRARLQAQFSQMR 405
K ER+A L+ +F Q++
Sbjct: 171 KVERQAELKRKFEQLK 186
Score = 269 (99.8 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 68/196 (34%), Positives = 109/196 (55%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + V D L +LFSQ G+ LSV+V RD +S G+G+V+Y
Sbjct: 86 GAKAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEK 142
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSH----RDPSIRKSGT-----------G-NIFIKN 124
DA +A++ +N ++ K I + + R +++ G N++IKN
Sbjct: 143 HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN 202
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
LD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 203 LDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 261
Query: 185 DKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 262 SKPLYVALAQRKEERK 277
Score = 206 (77.6 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
Identities = 43/95 (45%), Positives = 71/95 (74%)
Query: 492 QPM-PITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
QP+ P+TA + LA A P++Q+ +LGE L+PL++ + + A K+TGMLLE+D +E+LH+L
Sbjct: 455 QPLQPLTA--SMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 512
Query: 551 ESPEALKAKVAEAMEVLRSV-AQQQANNPADQLAS 584
ESPE+L++KV EA+ VL++ A+++A +A+
Sbjct: 513 ESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAA 547
Score = 185 (70.2 bits), Expect = 5.8e-28, Sum P(2) = 5.8e-28
Identities = 40/95 (42%), Positives = 60/95 (63%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 373 NGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
NG ++ + ++V + ++ER A L A+ + V
Sbjct: 61 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNV 95
Score = 115 (45.5 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 168 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 227
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 228 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 284
Query: 122 IKNL 125
++ +
Sbjct: 285 MQRV 288
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
Identities = 188/340 (55%), Positives = 248/340 (72%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T SLYVGDL +VT++ LY+ FS G +LS+R+CRDL T S Y YVN+ + DA AL
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL 69
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
D +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGNILSC
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 207
+ D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE + + K
Sbjct: 130 VVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAK 188
Query: 208 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ +NGK+ + ++ YVG+AQKK ER+ ELK FEQ ++ + ++Q +NLY+KNL D IDDE
Sbjct: 249 DEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDE 308
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 366
+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 309 RLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 347
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 113/299 (37%), Positives = 174/299 (58%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 166
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 167 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 226
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 227 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 346
+ ERE EL + KE F N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGAR----AKE----FP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 347 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+ F QM+
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMK 284
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 182/326 (55%), Positives = 242/326 (74%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
ASG+ + SLYVGDL +VT++ LY+ FS G +LS+RVCRD++TRRSLGY Y+N+ P
Sbjct: 3 ASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF L + IRIM+S RDP +RKSG GNIFIKNL+ SID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTF 122
Query: 142 GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
GNILSCK+A D G S+GFGFV FE E+AQ AI+ +NGML+ND++VFVGHF ++ERE
Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREA 181
Query: 202 V--AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259
A +F N++VKNL ++ L+ +F ++G + S VMRD G S+CFGFVNFE
Sbjct: 182 ELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKH 241
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319
++A KAV +NGK+ R Y G+AQK+ ER+ ELK +FEQ ++ + ++QG+NLY+KNL
Sbjct: 242 EEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNL 301
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMR 345
DSIDD+KL++ FS +G ITS K R
Sbjct: 302 DDSIDDDKLRKEFSPYGVITSAKKRR 327
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 100/296 (33%), Positives = 169/296 (57%)
Query: 115 SGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 169
SG+G ++++ +L + L++ FS G ILS ++ D + +S G+ ++ F+
Sbjct: 4 SGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPA 63
Query: 170 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
A+ A+D +N ++ + + + +R+ K+ N+F+KNL++S ++ L F
Sbjct: 64 DAERALDTMNFEMLKGQPIRI----MWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTF 119
Query: 230 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289
+G I S V D G S+ FGFV+FE + A +A+ +NG +DR+ +VG + + E
Sbjct: 120 STFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRE 178
Query: 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
RE EL + A++ T N+Y+KNL +D++ L++LFS+FG + S KVMRD SG
Sbjct: 179 REAELGAR---ALEFT-------NIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSG 228
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
S+ GFV F EEA +A+ MNGK + + LY AQ++ ER+ L+ +F QM+
Sbjct: 229 HSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMK 284
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 188/367 (51%), Positives = 260/367 (70%)
Query: 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA 85
++ SLYVGDL +VT+ L+ FS VG VLS+R+CRD TRRSLGY YVN+ ADA
Sbjct: 64 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 123
Query: 86 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+FG IL
Sbjct: 124 KALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 183
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE ++
Sbjct: 184 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA-ELR 241
Query: 206 TK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 262
+K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 242 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAA 301
Query: 263 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 322
KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKNL D+
Sbjct: 302 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDT 361
Query: 323 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382
IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++ SKPL
Sbjct: 362 IDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 420
Query: 383 YVAVAQR 389
+A+AQR
Sbjct: 421 SIALAQR 427
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 105/288 (36%), Positives = 168/288 (58%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 129 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 184
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 185 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 243
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
A + T N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 244 ---ASEFT-------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 293
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 294 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 341
Score = 206 (77.6 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 66/213 (30%), Positives = 109/213 (51%)
Query: 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
K + VA K + +++V +L T++ L + F G + S + RD + + G+
Sbjct: 55 KDKEMNVAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR-RSLGYA- 112
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NL 314
+ N A A +AL+ FD + GK+ ++ + Q ++ + G+ N+
Sbjct: 113 YVNFLQLADAQKALDTMNFDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGNV 158
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
+IKNL SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNG
Sbjct: 159 FIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNG 217
Query: 375 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
K++ ++V + +++R A L+++ S+ V
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAELRSKASEFTNV 250
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 188/367 (51%), Positives = 260/367 (70%)
Query: 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA 85
++ SLYVGDL +VT+ L+ FS VG VLS+R+CRD TRRSLGY YVN+ ADA
Sbjct: 6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQ 65
Query: 86 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ALD +NF + KSIR+M+S RD +R+SG GN+FIKNLDKSID+K L++ FS+FG IL
Sbjct: 66 KALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKIL 125
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ +D G SKG+ FV F+N+ +A AI+++NG L+ +VFVG F +++RE ++
Sbjct: 126 SSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA-ELR 183
Query: 206 TK---FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 262
+K F NV++KN DE LK +F +YG S VM D GKSK FGFV+F++ + A
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAA 243
Query: 263 AKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS 322
KAVE +NG+ + + +VG+AQKK ER+ ELK FEQ +E + QG+ LYIKNL D+
Sbjct: 244 KKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDT 303
Query: 323 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382
IDDEKL+ FS FG+I+ KVM++ G SKG G + FS+PE+A++A+ EMNG+++ SKPL
Sbjct: 304 IDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 362
Query: 383 YVAVAQR 389
+A+AQR
Sbjct: 363 SIALAQR 369
Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
Identities = 105/288 (36%), Positives = 168/288 (58%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L FS+ G +LS +I D + +S G+ +V F AQ A+D
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + L +R+ ++ NVF+KNLD+S ++ L + F +G I S
Sbjct: 71 MNFDIIKGKSIR----LMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS 126
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
+ VM D G SK + FV+F+N A +A+E +NGK + +VG+ + + +RE EL+ +
Sbjct: 127 SKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
A + T N+YIKN G +DDE+LK++FS++G S KVM D SG SKG GFV
Sbjct: 186 ---ASEFT-------NVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFV 235
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+F + E A +A+ EMNG+ I + ++V AQ+K ER+A L+ F Q++
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLK 283
Score = 202 (76.2 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 65/207 (31%), Positives = 107/207 (51%)
Query: 202 VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 261
VA K + +++V +L T++ L + F G + S + RD + + G+ + N
Sbjct: 3 VAAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTR-RSLGYA-YVNFLQ 60
Query: 262 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL-NLYIKNLG 320
A A +AL+ FD + GK+ ++ + Q ++ + G+ N++IKNL
Sbjct: 61 LADAQKALDTMNFDIIK---GKS---------IRLMWSQ--RDAYLRRSGIGNVFIKNLD 106
Query: 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
SID++ L E FS FG I S KVM D G SKG FV F A RA+ EMNGK++
Sbjct: 107 KSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGC 165
Query: 381 PLYVAVAQRKEERRARLQAQFSQMRPV 407
++V + +++R A L+++ S+ V
Sbjct: 166 KVFVGRFKNRKDREAELRSKASEFTNV 192
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 178/366 (48%), Positives = 253/366 (69%)
Query: 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA 85
++ SLYVGDL +VT+ L+ F+ VG VLS+R+CRDL + RSLGYGYVN+ DA
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 86 RALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+AL+ +NF + KSIR+M+S RD +RKSG GN+FIKNLDKSID+K L++ FS FG I+
Sbjct: 66 KALETMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIM 125
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK 205
S K+ TD G SKG+GFV ++++ +A AI+++NG L+ D +FV F +++RE +
Sbjct: 126 SSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELRE 184
Query: 206 --TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
+F NV++KN + DE L+ +F +YG S VM+D GKSK FGFV+F++ A
Sbjct: 185 KPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAK 244
Query: 264 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 323
AVE +NG+ + + +VG+AQKK ER+ ELK FEQ KE + Q LYIKNL D+I
Sbjct: 245 NAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTI 304
Query: 324 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383
DDE L++ FS FG+I KVM++ +G SKG G + F +PE A++A+AEMNG+++ SKPL
Sbjct: 305 DDETLRKEFSVFGSICRVKVMQE-AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLN 363
Query: 384 VAVAQR 389
+A+ Q+
Sbjct: 364 IALGQK 369
Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
Identities = 105/293 (35%), Positives = 170/293 (58%)
Query: 114 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 172
K ++++ +L + + L F++ G +LS +I D S +S G+G+V F AQ
Sbjct: 6 KYRAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQ 65
Query: 173 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 232
A++ +N LI K + L +R+ K+ NVF+KNLD+S ++ L + F +
Sbjct: 66 KALETMNFDLIKGKSIR----LMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPF 121
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 292
G I S+ VM D +G SK +GFV++++ A +A+E +NGK D +V + + + +RE
Sbjct: 122 GKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREA 180
Query: 293 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 352
EL+ E+ + T N+YIKN GD +DDE L+ +FS++G S KVM+D SG SK
Sbjct: 181 ELR---EKPAEFT-------NVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSK 230
Query: 353 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
GFV+F + + A A+ +MNG+ I + ++V AQ+K ER+A L+ F QM+
Sbjct: 231 RFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMK 283
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 746 (267.7 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 150/283 (53%), Positives = 198/283 (69%)
Query: 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAAR 86
F T SLYVGDL+ +VT++ LY++F+ VG V S+RVCRD TR+SLGY YVNY N ADA R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
ALD LN+T + + R+M+SHRDPS+RKSGTGNIF+KNLDKSID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 206
CK+ATD G+SK +GFV +E++ESA+ AI+K+NG+ + K V+VG F++K ER T T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATN--DT 190
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
KF N++VKN +S T+ L+++F YG ITS +V D K++ F F+N+ +A+ A A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDN--KNRKFCFINYADAESAKNAM 248
Query: 267 EALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 308
+ LNGKK DD + KK E G Q DK
Sbjct: 249 DNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 328 (120.5 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
Identities = 72/153 (47%), Positives = 97/153 (63%)
Query: 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 314
+ NA A K A + YVG Q ++ R LK +F+ E +K QG+NL
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
YIKNL D IDD L+ELF FGTITS KVMRD SKG GFV F++ EEA++A+ EM+
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHL 512
Query: 375 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
K+I KPLYV +A+++E+R +RLQ +F +M P+
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRF-RMHPI 544
Score = 258 (95.9 bits), Expect = 7.9e-32, Sum P(2) = 7.9e-32
Identities = 70/200 (35%), Positives = 104/200 (52%)
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
K+ N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +
Sbjct: 100 KSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKE 159
Query: 265 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324
A+E +NG + + YVG KKSER A +T KF NLY+KN DS+
Sbjct: 160 AIEKVNGVQLGSKNVYVGPFIKKSER----------ATNDT--KFT--NLYVKNFPDSVT 205
Query: 325 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLY 383
+ L++LF+ +G ITS V D ++ F+ ++ E A A+ +NGK I +
Sbjct: 206 ETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKITDDGQID 263
Query: 384 VAVAQRKEERRARLQAQFSQ 403
+KEE A +Q
Sbjct: 264 ETYDPKKEEATASTSGAANQ 283
Score = 218 (81.8 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 63/196 (32%), Positives = 103/196 (52%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LN Y K + + + + +++++ G N+++KNL SID++ L
Sbjct: 77 LN---------YTNI---KGQPARLMWSHRDPSLRKSGT---G-NIFVKNLDKSIDNKAL 120
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+ FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 389 RKEERRARLQAQFSQM 404
+K ER A +F+ +
Sbjct: 181 KKSER-ATNDTKFTNL 195
Score = 215 (80.7 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
Identities = 56/213 (26%), Positives = 105/213 (49%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T +++V +LD ++ + L+D FS G +LS +V D +S YG+V+Y + A A+
Sbjct: 103 TGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAI 161
Query: 89 DVLNFTPLNNKSIRI--MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
+ +N L +K++ + + + + N+++KN S+ L F+ +G I S
Sbjct: 162 EKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITS 221
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 206
+ D +++ F F+ + + ESA+NA+D LNG I D + K+E T +
Sbjct: 222 MIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSG 279
Query: 207 KFNNVFVKNLDEST-TDEDLKKIFGEYGTITSA 238
N + D++ D++ K E G ++A
Sbjct: 280 AANQTTGTDADKTDKNDKNNKADKNEKGDSSNA 312
Score = 188 (71.2 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
Identities = 56/189 (29%), Positives = 99/189 (52%)
Query: 115 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174
+ T N + + SI+ L++ ++ GN S + SG S +++ +A +
Sbjct: 355 TNTSNTTTGSSNNSIN---LNENNNTAGNNNSTN-NNNNSGSSMNNAGSAKKDETAASDC 410
Query: 175 IDKLNGMLINDKQVFVG-HFLRKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIF 229
D N + + Q H + K + + + ++ K N+++KNLD+ D L+++F
Sbjct: 411 ADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELF 470
Query: 230 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289
+GTITSA VMRD +SK FGFV F + ++A KAV ++ K + + YVG A+K+ +
Sbjct: 471 EPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQ 530
Query: 290 REQELKGQF 298
R L+ +F
Sbjct: 531 RLSRLQQRF 539
Score = 173 (66.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 36/72 (50%), Positives = 50/72 (69%)
Query: 497 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 556
T + ALA+A P Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E L
Sbjct: 801 TLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQL 860
Query: 557 KAKVAEAMEVLR 568
K K+ EA+ VL+
Sbjct: 861 KKKIDEALVVLQ 872
Score = 108 (43.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84
N+ +LY+ +LD + D L +LF G + S +V RD +S G+G+V +A+ +A
Sbjct: 445 NKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEA 503
Query: 85 ARALDVLNFTPLNNKSIRI 103
+A+ ++ +N K + +
Sbjct: 504 NKAVTEMHLKIINGKPLYV 522
Score = 89 (36.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 367
F +LY+ +L + + + L E+F+ G ++S +V RD + S G +V + +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 368 ALAEMNGKMIVSKPLYVAVAQRKEERR 394
AL +N I +P + + R R
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLR 99
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 746 (267.7 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 150/283 (53%), Positives = 198/283 (69%)
Query: 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAAR 86
F T SLYVGDL+ +VT++ LY++F+ VG V S+RVCRD TR+SLGY YVNY N ADA R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
ALD LN+T + + R+M+SHRDPS+RKSGTGNIF+KNLDKSID+KAL DTFS FGNILS
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILS 132
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 206
CK+ATD G+SK +GFV +E++ESA+ AI+K+NG+ + K V+VG F++K ER T T
Sbjct: 133 CKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATN--DT 190
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
KF N++VKN +S T+ L+++F YG ITS +V D K++ F F+N+ +A+ A A+
Sbjct: 191 KFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDN--KNRKFCFINYADAESAKNAM 248
Query: 267 EALNGKKF-DDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 308
+ LNGKK DD + KK E G Q DK
Sbjct: 249 DNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTTGTDADK 291
Score = 328 (120.5 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
Identities = 72/153 (47%), Positives = 97/153 (63%)
Query: 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 314
+ NA A K A + YVG Q ++ R LK +F+ E +K QG+NL
Sbjct: 393 SMNNAGSAKKDETAASDCADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
YIKNL D IDD L+ELF FGTITS KVMRD SKG GFV F++ EEA++A+ EM+
Sbjct: 453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHL 512
Query: 375 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
K+I KPLYV +A+++E+R +RLQ +F +M P+
Sbjct: 513 KIINGKPLYVGLAEKREQRLSRLQQRF-RMHPI 544
Score = 258 (95.9 bits), Expect = 7.9e-32, Sum P(2) = 7.9e-32
Identities = 70/200 (35%), Positives = 104/200 (52%)
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
K+ N+FVKNLD+S ++ L F +G I S V D GKSK +GFV++E+ + A +
Sbjct: 100 KSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKE 159
Query: 265 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324
A+E +NG + + YVG KKSER A +T KF NLY+KN DS+
Sbjct: 160 AIEKVNGVQLGSKNVYVGPFIKKSER----------ATNDT--KFT--NLYVKNFPDSVT 205
Query: 325 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLY 383
+ L++LF+ +G ITS V D ++ F+ ++ E A A+ +NGK I +
Sbjct: 206 ETHLRQLFNPYGEITSMIVKMDNK--NRKFCFINYADAESAKNAMDNLNGKKITDDGQID 263
Query: 384 VAVAQRKEERRARLQAQFSQ 403
+KEE A +Q
Sbjct: 264 ETYDPKKEEATASTSGAANQ 283
Score = 218 (81.8 bits), Expect = 2.3e-27, Sum P(2) = 2.3e-27
Identities = 63/196 (32%), Positives = 103/196 (52%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L+E T+ L +IF G ++S V RD KS + +VN+ N DA +A++
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LN Y K + + + + +++++ G N+++KNL SID++ L
Sbjct: 77 LN---------YTNI---KGQPARLMWSHRDPSLRKSGT---G-NIFVKNLDKSIDNKAL 120
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+ FS FG I SCKV D G SK GFV + E A A+ ++NG + SK +YV
Sbjct: 121 FDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFI 180
Query: 389 RKEERRARLQAQFSQM 404
+K ER A +F+ +
Sbjct: 181 KKSER-ATNDTKFTNL 195
Score = 215 (80.7 bits), Expect = 4.6e-58, Sum P(3) = 4.6e-58
Identities = 56/213 (26%), Positives = 105/213 (49%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T +++V +LD ++ + L+D FS G +LS +V D +S YG+V+Y + A A+
Sbjct: 103 TGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATD-EFGKSKSYGFVHYEDEESAKEAI 161
Query: 89 DVLNFTPLNNKSIRI--MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
+ +N L +K++ + + + + N+++KN S+ L F+ +G I S
Sbjct: 162 EKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITS 221
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 206
+ D +++ F F+ + + ESA+NA+D LNG I D + K+E T +
Sbjct: 222 MIVKMDN--KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSG 279
Query: 207 KFNNVFVKNLDEST-TDEDLKKIFGEYGTITSA 238
N + D++ D++ K E G ++A
Sbjct: 280 AANQTTGTDADKTDKNDKNNKADKNEKGDSSNA 312
Score = 188 (71.2 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
Identities = 56/189 (29%), Positives = 99/189 (52%)
Query: 115 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174
+ T N + + SI+ L++ ++ GN S + SG S +++ +A +
Sbjct: 355 TNTSNTTTGSSNNSIN---LNENNNTAGNNNSTN-NNNNSGSSMNNAGSAKKDETAASDC 410
Query: 175 IDKLNGMLINDKQVFVG-HFLRKQERETVAIKTKFN----NVFVKNLDESTTDEDLKKIF 229
D N + + Q H + K + + + ++ K N+++KNLD+ D L+++F
Sbjct: 411 ADTPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELF 470
Query: 230 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289
+GTITSA VMRD +SK FGFV F + ++A KAV ++ K + + YVG A+K+ +
Sbjct: 471 EPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQ 530
Query: 290 REQELKGQF 298
R L+ +F
Sbjct: 531 RLSRLQQRF 539
Score = 173 (66.0 bits), Expect = 3.4e-90, Sum P(2) = 3.4e-90
Identities = 36/72 (50%), Positives = 50/72 (69%)
Query: 497 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEAL 556
T + ALA+A P Q+ +LGE+L+PLV A K+TGM+LEMD +E+L LLE+ E L
Sbjct: 801 TLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQL 860
Query: 557 KAKVAEAMEVLR 568
K K+ EA+ VL+
Sbjct: 861 KKKIDEALVVLQ 872
Score = 108 (43.1 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84
N+ +LY+ +LD + D L +LF G + S +V RD +S G+G+V +A+ +A
Sbjct: 445 NKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEA 503
Query: 85 ARALDVLNFTPLNNKSIRI 103
+A+ ++ +N K + +
Sbjct: 504 NKAVTEMHLKIINGKPLYV 522
Score = 89 (36.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASR 367
F +LY+ +L + + + L E+F+ G ++S +V RD + S G +V + +A R
Sbjct: 13 FSTASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAER 72
Query: 368 ALAEMNGKMIVSKPLYVAVAQRKEERR 394
AL +N I +P + + R R
Sbjct: 73 ALDTLNYTNIKGQPARLMWSHRDPSLR 99
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
Identities = 172/320 (53%), Positives = 236/320 (73%)
Query: 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
++VLN+ L K +RIM+S RDPS R SG GN+F+KNLD+SID+K L D FS+FG +LSC
Sbjct: 1 MEVLNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSC 60
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 207
K+A D SG SKG+GFVQF + S A + NG LI ++ + V F+ + + + +
Sbjct: 61 KVARDASGVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRV--- 117
Query: 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
F NV+VKNL E+ TD DLK++FGE+G ITSAVVM+DG+GKS+ FGFVNFE A+ A A+E
Sbjct: 118 FTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIE 177
Query: 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFE-QAMKETVDKFQGLNLYIKNLGDSIDDE 326
+NG D++E +VG+AQ+K+ R ++LK +FE + + + +G+NLY+KNL DS+D+
Sbjct: 178 KMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDNT 237
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
KL+ELFSEFGTITSCKVM +GISKG GFV FST EEAS+A+ +MNGKM+ +KP+YV++
Sbjct: 238 KLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSL 297
Query: 387 AQRKEERRARLQAQFSQMRP 406
AQ KE+ + LQ QF+ P
Sbjct: 298 AQCKEQHKLHLQTQFNNPPP 317
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 102/283 (36%), Positives = 160/283 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+++V +LD ++ + QL D+FS G+VLS +V RD S S GYG+V + + A +
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGV-SKGYGFVQFYSDLSVYTACNF 90
Query: 91 LNFTPLNNKSIRIM-YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
N T + N+ I + + R + N+++KNL ++ L F FG I S +
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN 209
DG G+S+ FGFV FE E+A AI+K+NG+++++K++ VG RK R T +K KF
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-TEDLKAKFE 209
Query: 210 --------------NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
N++VKNLD+S + L+++F E+GTITS VM +G SK GFV
Sbjct: 210 LEKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVE 269
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 298
F +++A+KA+ +NGK ++ YV AQ K + + L+ QF
Sbjct: 270 FSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 263 (97.6 bits), Expect = 3.1e-20, P = 3.1e-20
Identities = 65/210 (30%), Positives = 112/210 (53%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
V+ G + T++YV +L TD+ L LF + G++ S V +D +S +G+VN
Sbjct: 107 VSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKD-GEGKSRRFGFVN 165
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPS--------------IR--KSGTG-NI 120
+ A A++ +N ++ K + + + R + IR K+ G N+
Sbjct: 166 FEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNL 225
Query: 121 FIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180
++KNLD S+D+ L + FS FG I SCK+ +G SKG GFV+F E A A+ K+NG
Sbjct: 226 YVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNG 285
Query: 181 MLINDKQVFVGHFLRKQERETVAIKTKFNN 210
++ +K ++V + +E+ + ++T+FNN
Sbjct: 286 KMVGNKPIYVS-LAQCKEQHKLHLQTQFNN 314
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 188/383 (49%), Positives = 255/383 (66%)
Query: 13 SG-PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
SG PN AG ++L +LYVGDLD +VT+ LY F G + R+CRD TR L
Sbjct: 3 SGEPN--PAGKK-KKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPL 59
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDH 131
GYGYVN+ PADA AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID+
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDN 119
Query: 132 KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 191
+AL FS+FGNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG
Sbjct: 120 RALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Query: 192 HFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 247
F +ER ++T+ F NVFVKN+ + DE LK++F EYG S V+RD GK
Sbjct: 179 RFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK 237
Query: 248 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 307
SK FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +FE+ +
Sbjct: 238 SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
Query: 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 367
+ G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEA++
Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATK 356
Query: 368 ALAEMNGKMIVSKPLYVAVAQRK 390
A+ EMNG+++ SKPL+V + Q +
Sbjct: 357 AVDEMNGRIVGSKPLHVTLGQAR 379
Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
Identities = 103/287 (35%), Positives = 164/287 (57%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 178
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 238
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S
Sbjct: 80 NFDLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 239 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 298
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 191
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358
T D+ N+++KN+GD IDDEKLKELF E+G S KV+RD SG SKG GFV
Sbjct: 192 ------TRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVR 245
Query: 359 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+ T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 187/382 (48%), Positives = 252/382 (65%)
Query: 13 SG-PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
SG PN AG ++L +LYVGDLD +VT+ LY F G + R+CRD TR L
Sbjct: 3 SGEPN--PAGKK-KKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPL 59
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDH 131
GYGYVN+ PADA AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID+
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDN 119
Query: 132 KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 191
+AL FS+FG+ILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG
Sbjct: 120 RALFYLFSAFGSILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Query: 192 HFLRKQERET-VAIKTK--FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS 248
F +ER V + K F NVFVKN + D+ LK++F EYG S V+RD GKS
Sbjct: 179 RFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKS 238
Query: 249 KCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDK 308
K FGFV +E + A KAV L+GK D + YVG+AQKK ER EL+ +FE+ + +
Sbjct: 239 KGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSR 298
Query: 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRA 368
G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G + FS+ EEA++A
Sbjct: 299 PPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKA 357
Query: 369 LAEMNGKMIVSKPLYVAVAQRK 390
+ EMNG+++ SKPL V + Q +
Sbjct: 358 VDEMNGRIVGSKPLQVTLGQAR 379
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 103/287 (35%), Positives = 165/287 (57%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 178
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 238
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G+I S
Sbjct: 80 NFDLINGKPF---RLMWSQPDDRLR-KSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSC 135
Query: 239 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 298
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 191
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358
T DK N+++KN GD +DD+KLKELFSE+G S KV+RD SG SKG GFV
Sbjct: 192 ------TRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVR 245
Query: 359 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+ T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 246 YETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLR 292
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 188/383 (49%), Positives = 252/383 (65%)
Query: 13 SG-PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
SG PN AG ++L +LYVGDLD +VT+ LY F G + R+CRD TR L
Sbjct: 3 SGEPN--TAGKK-KKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPL 59
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDH 131
GYGYVN+ PADA AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID+
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDN 119
Query: 132 KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 191
+AL FS+FGNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG
Sbjct: 120 RALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Query: 192 HFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 247
F +ER ++T+ F NVFVKN + DE LKK+F EYG S V+RD GK
Sbjct: 179 RFKFPEER-AAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGK 237
Query: 248 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 307
SK FGFV +E + A KAV L+GK D + VG+AQKK ER EL+ +FE+ +
Sbjct: 238 SKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKT 297
Query: 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 367
+ G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG G V FS+ EEAS+
Sbjct: 298 RPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASK 356
Query: 368 ALAEMNGKMIVSKPLYVAVAQRK 390
A+ EMNG+++ SK L+V + Q +
Sbjct: 357 AVNEMNGRVVGSKTLHVTLGQAR 379
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 101/287 (35%), Positives = 163/287 (56%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 178
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 238
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S
Sbjct: 80 NFDLINGKPF---RLMWSQPDDHLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 239 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 298
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 191
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358
T D+ N+++KN GD IDDEKLK+LFSE+G S KV+RD +G SKG GFV
Sbjct: 192 ------TRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVR 245
Query: 359 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+ T E A +A+ E++GK I K L V AQ+K ER A L+ +F +++
Sbjct: 246 YETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLK 292
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
Identities = 187/383 (48%), Positives = 251/383 (65%)
Query: 13 SG-PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
SG PN AG ++L +LYVGDLD +VT+ LY F G + R+CRD TR L
Sbjct: 3 SGEPN--PAGKK-KKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPL 59
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDH 131
GYGYVN+ PADA AL+ +NF +N K R+M+S D +RKSG GNIFIKNLDKSID+
Sbjct: 60 GYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDN 119
Query: 132 KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 191
+AL FS+FGNILSCK+ D +G SKG+ +V F++ +A AI +NG+ +N++QV+VG
Sbjct: 120 RALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG 178
Query: 192 HFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK 247
F +ER ++T+ F NVFVKN DE LK+IF YG S V+RD GK
Sbjct: 179 RFKFPEER-AAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGK 237
Query: 248 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 307
SK FGFV +E + A KAV L+GK + + YVG+AQKK ER EL+ +FE+ +
Sbjct: 238 SKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297
Query: 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 367
+ G+ +YIKNL ++IDDEKLKE FS FG+I+ KVM + G KG G V FS+ E+A++
Sbjct: 298 RPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATK 356
Query: 368 ALAEMNGKMIVSKPLYVAVAQRK 390
A+ EMNG+ + SKPL+V + Q +
Sbjct: 357 AVDEMNGRTVGSKPLHVTLGQAR 379
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 100/287 (34%), Positives = 163/287 (56%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-GFGFVQFENKESAQNAIDKL 178
+++ +LD + L+ F G + +I D +S G+G+V F A+ A++ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 238
N LIN K + Q + + K+ N+F+KNLD+S + L +F +G I S
Sbjct: 80 NFDLINGKPF---RLMWSQPDDRLR-KSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 239 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 298
V+ D +G SK + +V+F++ A +A+ +NG + ++R+ YVG+ + ER E++
Sbjct: 136 KVVCDDNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVR--- 191
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358
T D+ N+++KN G+ +DDEKLKE+FS +G S KV+RD SG SKG GFV
Sbjct: 192 ------TRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVR 245
Query: 359 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+ T E A +A+ +++GK I K LYV AQ+K ER A L+ +F ++R
Sbjct: 246 YETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLR 292
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 802 (287.4 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 170/379 (44%), Positives = 248/379 (65%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SLYVGDL +VT+ L D FS V+SV +CR+ T +S+ Y Y+N+ +P A+ A+
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRK---SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
LN + L K++RIM+S RD + R+ +G N+++KNLD SI L F FG+ILSC
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTK 207
K+ + +GQSKGFGFVQF+ ++SA +A L+G ++ K++FV F+ K ER +A
Sbjct: 142 KVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQD 200
Query: 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
NV+VKNL E+ TD+ L +F +YGT++S VVMRDG G+S+ FGFVNF N ++A KA+E
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAME 260
Query: 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
+L G + ++ +VGKA KK ER + LK +F + + NLY+KNL +S+++ +
Sbjct: 261 SLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPN-MRWSNLYVKNLSESMNETR 319
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
L+E+F +G I S KVM +G SKG GFV FS EE+ +A +NG ++ KP+ V VA
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 388 QRKEERRARLQAQFSQMRP 406
+RKE+R RLQ Q+ Q +P
Sbjct: 380 ERKEDRIKRLQ-QYFQAQP 397
Score = 385 (140.6 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 99/288 (34%), Positives = 158/288 (54%)
Query: 118 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 176
G++++ +L + K L D FS ++S + + +G+S + ++ F++ SA NA+
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 177 KLNGMLINDKQVFVGHFLRK--QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
+LN + K + + R R T +T F N++VKNLD S T L+++F +G+
Sbjct: 81 RLNHSDLKGKAMRIMWSQRDLAYRRRT---RTGFANLYVKNLDSSITSSCLERMFCPFGS 137
Query: 235 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 294
I S V+ + +G+SK FGFV F+ A A AL+G ++ +V K K ER
Sbjct: 138 ILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERA--- 193
Query: 295 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 354
AM D N+Y+KNL +++ D+ L LFS++GT++S VMRD G S+G
Sbjct: 194 ------AMAGNQDS---TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGF 244
Query: 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFS 402
GFV F PE A +A+ + G + SK L+V A +K+ERR L+ +FS
Sbjct: 245 GFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFS 292
Score = 271 (100.5 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
Identities = 73/195 (37%), Positives = 108/195 (55%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A +GNQ +T++YV +L VTD L+ LFSQ G V SV V RD RS G+G+VN+
Sbjct: 193 AAMAGNQD-STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFC 250
Query: 80 NPADAARALDVLNFTPLNNKSI-----------RIMYSHR--DPSIRKSGT--GNIFIKN 124
NP +A +A++ L L +K + R M + D I K N+++KN
Sbjct: 251 NPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKN 310
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
L +S++ L + F +G I+S K+ +G+SKGFGFV F N E ++ A LNG L++
Sbjct: 311 LSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVD 370
Query: 185 DKQVFVGHFLRKQER 199
K + V RK++R
Sbjct: 371 GKPIVVRVAERKEDR 385
Score = 236 (88.1 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 64/191 (33%), Positives = 103/191 (53%)
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAK 264
++F +++V +L T++DL F + S + R+ GKS C+ ++NF++ A+
Sbjct: 18 SRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASN 77
Query: 265 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324
A+ LN D + GKA + +++L + + T F NLY+KNL SI
Sbjct: 78 AMTRLN---HSDLK---GKAMRIMWSQRDLAYR-----RRTRTGFA--NLYVKNLDSSIT 124
Query: 325 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
L+ +F FG+I SCKV+ + +G SKG GFV F T + A A + ++G M+ K L+V
Sbjct: 125 SSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
Query: 385 AVAQRKEERRA 395
A K+ER A
Sbjct: 184 AKFINKDERAA 194
Score = 37 (18.1 bits), Expect = 9.4e-82, Sum P(2) = 9.4e-82
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 389 RKEERRARLQAQFS 402
RKEERR L + S
Sbjct: 511 RKEERRLTLSGKLS 524
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 602 (217.0 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 118/217 (54%), Positives = 161/217 (74%)
Query: 189 FVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 246
FVG F ++ERE + + K F NV++KN E DE LK++FG++G S VM D G
Sbjct: 1 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESG 60
Query: 247 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 306
KSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ +
Sbjct: 61 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 120
Query: 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 366
++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 121 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 179
Query: 367 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403
+A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 180 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 216
Score = 409 (149.0 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 89/197 (45%), Positives = 122/197 (61%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
N++IKN + +D + L + F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 225
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 142
Query: 226 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 143 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 201
Query: 286 KKSEREQELKGQFEQAM 302
+K ER+ L Q+ Q M
Sbjct: 202 RKEERQAHLTNQYMQRM 218
Score = 265 (98.3 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
Identities = 59/126 (46%), Positives = 80/126 (63%)
Query: 280 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 339
+VG+ + + ERE EL + KE N+YIKN G+ +DDE+LKELF +FG
Sbjct: 1 FVGRFKSRKEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKELFGKFGPAL 50
Query: 340 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 399
S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+
Sbjct: 51 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 110
Query: 400 QFSQMR 405
+F QM+
Sbjct: 111 KFEQMK 116
Score = 265 (98.3 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
Identities = 67/196 (34%), Positives = 108/196 (55%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + ++ D +L +LF + G LSV+V D S + S G+G+V++
Sbjct: 16 GARAKEF--TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGK-SKGFGFVSFER 72
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSH----RDPSIRKSGT-----------G-NIFIKN 124
DA +A+D +N LN K I + + R +++ G N+++KN
Sbjct: 73 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 132
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
LD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 133 LDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 191
Query: 185 DKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 192 TKPLYVALAQRKEERQ 207
Score = 213 (80.0 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 45/93 (48%), Positives = 68/93 (73%)
Query: 491 GQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLL 550
GQ P+TA + LA+A P++Q+ +LGE L+PL++ + A K+TGMLLE+D +E+LH+L
Sbjct: 374 GQE-PLTA--SMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHML 430
Query: 551 ESPEALKAKVAEAMEVLRS-----VAQQQANNP 578
ESPE+L++KV EA+ VL++ AQ+ NNP
Sbjct: 431 ESPESLRSKVDEAVAVLQAHQAKEAAQKAVNNP 463
Score = 100 (40.3 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 29/124 (23%), Positives = 61/124 (49%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ Q ++ ++ +LYV +LD + D +L FS G + S +V
Sbjct: 98 AQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 157
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ RS G+G+V +++P +A +A+ +N + K + + + R R++ N +
Sbjct: 158 M--MEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE-RQAHLTNQY 214
Query: 122 IKNL 125
++ +
Sbjct: 215 MQRM 218
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 704 (252.9 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 166/406 (40%), Positives = 239/406 (58%)
Query: 8 HQAQMSGPNGVAAGASGNQFLT-------------TSLYVGDLDFNVTDSQLYDLFSQVG 54
HQ + P G AGA+G L+ TSLYVGDL +V + L +LFS+VG
Sbjct: 149 HQHHHTSPMGAGAGAAGMPILSMSPIGAYQPPHQLTSLYVGDLAADVNEIILNELFSKVG 208
Query: 55 Q--VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSI 112
+ + S+ VCRD +T RSLGY YVN+ N DA RALD LN+T ++ K RIM+S+RDP+
Sbjct: 209 RNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRIMWSYRDPTK 268
Query: 113 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ 172
RK+ GNIF+KNL+K +D+ L+DTFSSFGNILSCK+ + G SKG+G+V FE +SA+
Sbjct: 269 RKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAE 327
Query: 173 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK-IFGE 231
AI+K+NG LI K + V F+ K ER V N VF +N DES T E L++ +
Sbjct: 328 KAIEKVNGTLILGKPINVERFVSKVERYKVE-----NKVFFRNADESITIEILQQELSNR 382
Query: 232 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA--------VEALNGKKFDDREWYVGK 283
+G I S ++ D +GKSK G V F+N +DA K + ++G +
Sbjct: 383 FGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTIDGTTTVSSNGGTIE 442
Query: 284 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 343
K +K + E+ E K L+L+I N+ +SID + +KE F++ GTI K+
Sbjct: 443 INGKPITIDRIKSKVER-FTEYRKKTTDLSLFINNIDESIDRDLIKEEFAKHGTIIGIKI 501
Query: 344 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
++D + +KG GF++FS +EA +AL +NG SK + V+ + +
Sbjct: 502 VQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNK 547
Score = 168 (64.2 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 35/81 (43%), Positives = 51/81 (62%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N+++KNL +D+ L + FS FG I SCKV + GISKG G+V F T + A +A+ ++
Sbjct: 275 NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFE-KGISKGYGYVHFETNDSAEKAIEKV 333
Query: 373 NGKMIVSKPLYVAVAQRKEER 393
NG +I+ KP+ V K ER
Sbjct: 334 NGTLILGKPINVERFVSKVER 354
Score = 161 (61.7 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 40/127 (31%), Positives = 69/127 (54%)
Query: 183 INDKQVFVGHFLRKQERET-VAIKTKFNNVFVKNLDESTTDEDL-KKIFGEYGTITSAVV 240
IN K + + K ER T KT ++F+ N+DES D DL K+ F ++GTI +
Sbjct: 443 INGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESI-DRDLIKEEFAKHGTIIGIKI 501
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFE 299
++D + ++K FGF++F +A KA+++LNG F ++ V + K + + +L G
Sbjct: 502 VQDENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNGNST 561
Query: 300 QAMKETV 306
+ K +
Sbjct: 562 KITKNII 568
Score = 117 (46.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 22/90 (24%), Positives = 54/90 (60%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SL++ ++D ++ + + F++ G ++ +++ +D + R G+G+++++ +A +ALD
Sbjct: 471 SLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDENARNK-GFGFISFSEIQEAQKALDS 529
Query: 91 LNFTPLNNKSIRIMYSHRDPS-IRKSGTGN 119
LN +K I++ +S++D + I GN
Sbjct: 530 LNGFTFGSKQIQVSFSNKDNNQINNKLNGN 559
Score = 68 (29.0 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 495 PITALSTA-LANASPEQQRTLLGESLYPLVEQLER---DAAAKVTGMLLEM--DQTEVLH 548
P T ++ + NA+ E+ LG +Y LV + AAK+ GM+++ + E+
Sbjct: 731 PKTTITLEFITNATAEEATETLGSEVYNLVLAKYNNNIELAAKIAGMIVDAVPEHKELFE 790
Query: 549 LLESPEALKAKVAEAMEVLRSVAQQ 573
++ + + +++K+ EA +L Q+
Sbjct: 791 IISNGQ-IQSKIEEAKSLLDQPDQE 814
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
Identities = 139/257 (54%), Positives = 190/257 (73%)
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 207
+ D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F ++ERE + + K
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAK 60
Query: 208 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV++KN E DE LK +FG S VM D GKSK FGFV+FE +DA KAV
Sbjct: 61 EFTNVYIKNFGEDMDDERLKDLFGP---ALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 117
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE
Sbjct: 118 DEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDE 177
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
+L++ FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+
Sbjct: 178 RLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 236
Query: 387 AQRKEERRARLQAQFSQ 403
AQRKEER+A L Q+ Q
Sbjct: 237 AQRKEERQAHLTNQYMQ 253
Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
Identities = 102/252 (40%), Positives = 146/252 (57%)
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIK 123
S GYG+V++ A RA++ +N LN++ + + R+ + R N++IK
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 68
Query: 124 NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
N + +D + L D F G LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +
Sbjct: 69 NFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKEL 125
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFG 230
N KQ++VG +K ER+T +K KF N++VKNLD+ DE L+K F
Sbjct: 126 NGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 184
Query: 231 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290
+GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ+K ER
Sbjct: 185 PFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 243
Query: 291 EQELKGQFEQAM 302
+ L Q+ Q M
Sbjct: 244 QAHLTNQYMQRM 255
Score = 319 (117.4 bits), Expect = 4.5e-28, P = 4.5e-28
Identities = 74/166 (44%), Positives = 105/166 (63%)
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE 299
V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 2 VVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-- 58
Query: 300 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 359
KE N+YIKN G+ +DDE+LK+LF G S KVM D SG SKG GFV+F
Sbjct: 59 --AKEFT------NVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSF 107
Query: 360 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
E+A +A+ EMNGK + K +YV AQ+K ER+ L+ +F QM+
Sbjct: 108 ERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMK 153
Score = 256 (95.2 bits), Expect = 3.5e-21, P = 3.5e-21
Identities = 68/196 (34%), Positives = 107/196 (54%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + ++ D +L DLF G LSV+V D S + S G+G+V++
Sbjct: 56 GARAKEF--TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGK-SKGFGFVSFER 109
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSH----RDPSIRKSGT-----------G-NIFIKN 124
DA +A+D +N LN K I + + R +++ G N+++KN
Sbjct: 110 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 169
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
LD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 170 LDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 228
Query: 185 DKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 229 TKPLYVALAQRKEERQ 244
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 136/247 (55%), Positives = 178/247 (72%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T SLYVGDL +VT++ LY+ FS G +LS+R+CRDL T S Y YVN+ + DA AL
Sbjct: 10 TASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHAL 69
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
D +NF + K +RIM+S RDPS+RKSG GNIF+KNLDKSI++KAL+DT S+FGNILSC
Sbjct: 70 DTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 207
+ D +G SKG+GFV FE E+A+ AI K+NGML+N ++VFVG F ++ERE + + K
Sbjct: 130 VVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAK 188
Query: 208 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV++KN E DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV
Sbjct: 189 EFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAV 248
Query: 267 EALNGKK 273
+ +NGK+
Sbjct: 249 DEMNGKE 255
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 101/269 (37%), Positives = 156/269 (57%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD--GSGQSKGFGFVQFE 166
+PS T ++++ +L + L++ FS G ILS +I D SG S + +V F+
Sbjct: 2 NPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN-YAYVNFQ 60
Query: 167 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 226
+ + A++A+D +N +I K V + +R+ K+ N+FVKNLD+S ++ L
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFVKNLDKSINNKALY 116
Query: 227 KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
+G I S V+ D +G SK +GFV+FE + A +A++ +NG + R+ +VG+ +
Sbjct: 117 DTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKS 175
Query: 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 346
+ ERE EL + KE F N+YIKN G+ +DDE+LK+LF +FG S KVM D
Sbjct: 176 RKEREAELGAR----AKE----FP--NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD 225
Query: 347 PSGISKGSGFVAFSTPEEASRALAEMNGK 375
SG SKG GFV+F E+A +A+ EMNGK
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Score = 176 (67.0 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 37/88 (42%), Positives = 57/88 (64%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N+++KNL SI+++ L + S FG I SC V+ D +G SKG GFV F T E A RA+ +M
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKM 158
Query: 373 NGKMIVSKPLYVAVAQRKEERRARLQAQ 400
NG ++ + ++V + ++ER A L A+
Sbjct: 159 NGMLLNGRKVFVGQFKSRKEREAELGAR 186
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 428 (155.7 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 84/140 (60%), Positives = 111/140 (79%)
Query: 264 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 323
KAVE +NGK+ + +VG+AQKK ER+ ELK +FEQ +E + ++QG+NLYIKNL D+I
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 324 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383
DDEKL++ FS FG+ITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ SKPLY
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 384 VAVAQRKEERRARLQAQFSQ 403
VA+AQRKEER+A L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 238 (88.8 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 55/140 (39%), Positives = 84/140 (60%)
Query: 174 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDEST 220
A++++NG ++ K +FVG +K ER+ +K KF N+++KNLD++
Sbjct: 2 AVEEMNGKEMSGKSIFVGRAQKKVERQA-ELKRKFEQLKQERISRYQGVNLYIKNLDDTI 60
Query: 221 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWY 280
DE L+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +NG+ + Y
Sbjct: 61 DDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLY 119
Query: 281 VGKAQKKSEREQELKGQFEQ 300
V AQ+K ER+ L Q+ Q
Sbjct: 120 VALAQRKEERKAHLTNQYMQ 139
Score = 207 (77.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 46/122 (37%), Positives = 76/122 (62%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLV 523
P+ + P P P+ V P+TA + LA A P++Q+ +LGE L+PL+
Sbjct: 293 PYKYASNVRSPHPAIQPLQAPQPAVHVQGQEPLTA--SMLAAAPPQEQKQMLGERLFPLI 350
Query: 524 EQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV-AQQQANNPADQL 582
+ + + A K+TGMLLE+D +E+LH+LESPE+L++KV EA+ VL++ A+++A +
Sbjct: 351 QTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGTV 410
Query: 583 AS 584
A+
Sbjct: 411 AA 412
Score = 183 (69.5 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 36/82 (43%), Positives = 54/82 (65%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
N++IKNLD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++
Sbjct: 50 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 108
Query: 179 NGMLINDKQVFVGHFLRKQERE 200
NG ++ K ++V RK+ER+
Sbjct: 109 NGRIVGSKPLYVALAQRKEERK 130
Score = 115 (45.5 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 31/124 (25%), Positives = 64/124 (51%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV 61
AQ +V+ QA++ +++ +LY+ +LD + D +L FS G + S +V
Sbjct: 21 AQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKV 80
Query: 62 CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
L RS G+G+V +++P +A +A+ +N + +K + + + R RK+ N +
Sbjct: 81 M--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE-RKAHLTNQY 137
Query: 122 IKNL 125
++ +
Sbjct: 138 MQRV 141
Score = 89 (36.4 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 367 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+A+ EMNGK + K ++V AQ+K ER+A L+ +F Q++
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLK 39
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 118/217 (54%), Positives = 160/217 (73%)
Query: 189 FVGHFLRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 246
FVG F ++ERE + + K F NV++KN E DE LK +FG++G S VM D G
Sbjct: 2 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 61
Query: 247 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 306
KSK FGFV+FE +DA KAV+ +NGK+ + ++ YVG+AQKK ER+ ELK +FEQ ++ +
Sbjct: 62 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 121
Query: 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 366
++QG+NLY+KNL D IDDE+L++ FS FGTITS KVM + G SKG GFV FS+PEEA+
Sbjct: 122 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEAT 180
Query: 367 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403
+A+ EMNG+++ +KPLYVA+AQRKEER+A L Q+ Q
Sbjct: 181 KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQ 217
Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 90/197 (45%), Positives = 122/197 (61%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
N++IKN + +D + L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDL 225
NG +N KQ++VG +K ER+T +K KF N++VKNLD+ DE L
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 143
Query: 226 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 144 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 202
Query: 286 KKSEREQELKGQFEQAM 302
+K ER+ L Q+ Q M
Sbjct: 203 RKEERQAHLTNQYMQRM 219
Score = 269 (99.8 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 68/196 (34%), Positives = 108/196 (55%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + ++ D +L DLF + G LSV+V D S + S G+G+V++
Sbjct: 17 GARAKEF--TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFER 73
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSH----RDPSIRKSGT-----------G-NIFIKN 124
DA +A+D +N LN K I + + R +++ G N+++KN
Sbjct: 74 HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN 133
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
LD ID + L FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++
Sbjct: 134 LDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 192
Query: 185 DKQVFVGHFLRKQERE 200
K ++V RK+ER+
Sbjct: 193 TKPLYVALAQRKEERQ 208
Score = 262 (97.3 bits), Expect = 7.9e-22, P = 7.9e-22
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 280 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 339
+VG+ + + ERE EL + KE N+YIKN G+ +DDE+LK+LF +FG
Sbjct: 2 FVGRFKSRKEREAELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPAL 51
Query: 340 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQA 399
S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV AQ+K ER+ L+
Sbjct: 52 SVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKR 111
Query: 400 QFSQMR 405
+F QM+
Sbjct: 112 KFEQMK 117
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 109/197 (55%), Positives = 142/197 (72%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T SLYVGDL VT+S LY+ FS G +LS+R+CRD TRRSLGY YVNY P DA RAL
Sbjct: 1 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 60
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ +NF +N + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGNILSCK
Sbjct: 61 ETMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCK 120
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKT 206
+A D G KG+GFV F+ +ESA+ AID LNGM +N +++FVG F +ERE A
Sbjct: 121 VACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAERGAWAR 179
Query: 207 KFNNVFVKNLDESTTDE 223
+ + K+ D+ + DE
Sbjct: 180 QSTSADFKDFDDDSDDE 196
Score = 232 (86.7 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 63/211 (29%), Positives = 111/211 (52%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 175
T ++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A+
Sbjct: 1 TASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRAL 60
Query: 176 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI 235
+ +N +IN + V + +R+ K+ NVF+KNL ++ ++ L IF +G I
Sbjct: 61 ETMNFDVINGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNI 116
Query: 236 TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK 295
S V D G K +GFV+F+ + A +A++ALNG + R+ +VG+ + ERE E +
Sbjct: 117 LSCKVACDEKGP-KGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAE-R 174
Query: 296 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
G + A + T F K+ D DDE
Sbjct: 175 GAW--ARQSTSADF-------KDFDDDSDDE 196
Score = 198 (74.8 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 60/187 (32%), Positives = 94/187 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
+N + R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 MNFDVINGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+FS FG I SCKV D G KG GFV F E A RA+ +NG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFK 165
Query: 389 RKEERRA 395
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 107/195 (54%), Positives = 141/195 (72%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SLYVGDL VT++ LY+ FS G +LS+R+CRD TRRSLGY YVNY P DA RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGNILSCK+A
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKF 208
D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE A +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 209 NNVFVKNLDESTTDE 223
+ VK+ +E T +E
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 224 (83.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 56/193 (29%), Positives = 101/193 (52%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 298 FEQAMKETVDKFQ 310
Q+ V F+
Sbjct: 178 ARQSTSADVKDFE 190
Score = 202 (76.2 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 389 RKEERRA 395
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 107/195 (54%), Positives = 141/195 (72%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SLYVGDL VT++ LY+ FS G +LS+R+CRD TRRSLGY YVNY P DA RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGNILSCK+A
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKF 208
D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE A +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 209 NNVFVKNLDESTTDE 223
+ VK+ +E T +E
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 224 (83.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 56/193 (29%), Positives = 101/193 (52%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 298 FEQAMKETVDKFQ 310
Q+ V F+
Sbjct: 178 ARQSTSADVKDFE 190
Score = 202 (76.2 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 389 RKEERRA 395
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 107/195 (54%), Positives = 141/195 (72%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SLYVGDL VT++ LY+ FS G +LS+R+CRD TRRSLGY YVNY P DA RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGNILSCK+A
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKF 208
D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE A +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 209 NNVFVKNLDESTTDE 223
+ VK+ +E T +E
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 220 (82.5 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 55/193 (28%), Positives = 100/193 (51%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS +I D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V D G K +GFV+F+ + A +A++ +NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 298 FEQAMKETVDKFQ 310
Q+ V F+
Sbjct: 178 ARQSTSADVKDFE 190
Score = 201 (75.8 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFK 165
Query: 389 RKEERRA 395
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
Identities = 107/195 (54%), Positives = 141/195 (72%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SLYVGDL VT++ LY+ FS G +LS+R+CRD TRRSLGY YVNY P DA RAL+
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
LNF + + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGNILSCK+A
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVA 122
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV--AIKTKF 208
D G KG+GFV F+ +ESA+ AID +NGM +N +++FVG F +ERE A +
Sbjct: 123 CDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAWARQS 181
Query: 209 NNVFVKNLDESTTDE 223
+ VK+ +E T +E
Sbjct: 182 TSADVKDFEEDTDEE 196
Score = 222 (83.2 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 55/193 (28%), Positives = 101/193 (52%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS ++ D + +S G+ +V ++ A+ A++
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
LN +I + V + +R+ K+ NVF+KNL ++ ++ L IF +G I S
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILS 118
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V D G K +GFV+F+ + A +A++A+NG + R+ +VG+ + ERE E
Sbjct: 119 CKVACDEKGP-KGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAERGAW 177
Query: 298 FEQAMKETVDKFQ 310
Q+ V F+
Sbjct: 178 ARQSTSADVKDFE 190
Score = 200 (75.5 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 62/187 (33%), Positives = 93/187 (49%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L T+ L + F G I S + RD +S + +VN++ DA +A+E
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LN R + S+R+ L+ K V N++IKNLG +ID++ L
Sbjct: 63 LNFDVIKGRPVRI----MWSQRDPSLR-------KSGVG-----NVFIKNLGKTIDNKAL 106
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+FS FG I SCKV D G KG GFV F E A RA+ MNG + + ++V +
Sbjct: 107 YNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFK 165
Query: 389 RKEERRA 395
+ER A
Sbjct: 166 SHKEREA 172
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 102/217 (47%), Positives = 145/217 (66%)
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTK----FNNVFVKNLDESTTDEDLKKIFGEYG 233
+NG+ +N++QV+VG F +ER ++T+ F NVFVKN+ + DE LK++F EYG
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEER-AAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYG 59
Query: 234 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 293
S V+RD GKSK FGFV +E + A KAV L+GK D + YVG+AQKK ER E
Sbjct: 60 PTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAE 119
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 353
L+ +FE+ + + G+ +YIKNL ++I+DEKLKE FS FG+I+ KVM + G KG
Sbjct: 120 LRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKG 178
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390
G V FS+ EEA++A+ EMNG+++ SKPL+V + Q +
Sbjct: 179 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Score = 294 (108.6 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 75/218 (34%), Positives = 123/218 (56%)
Query: 91 LNFTPLNNKSI---RIMY-SHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGN 143
+N LNN+ + R + R +R ++ N+F+KN+ ID + L + F +G
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 60
Query: 144 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---- 199
S K+ D SG+SKGFGFV++E E+AQ A+ L+G I+ K ++VG +K ER
Sbjct: 61 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 120
Query: 200 ----ETVAIKTKFNN----VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251
E + +K K +++KNLDE+ DE LK+ F +G+I+ A VM + G+ K F
Sbjct: 121 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEV-GQGKGF 179
Query: 252 GFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKK 287
G V F + ++A KAV+ +NG+ + +V G+A+++
Sbjct: 180 GVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARRR 217
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 61/137 (44%), Positives = 88/137 (64%)
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
+NG + ++R+ YVG+ + ER E++ T D+ N+++KN+GD IDDEKL
Sbjct: 1 MNGVRLNNRQVYVGRFKFPEERAAEVR---------TRDRATFTNVFVKNIGDDIDDEKL 51
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
KELF E+G S KV+RD SG SKG GFV + T E A +A+ +++GK I K LYV AQ
Sbjct: 52 KELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQ 111
Query: 389 RKEERRARLQAQFSQMR 405
+K ER A L+ +F ++R
Sbjct: 112 KKIERLAELRRRFERLR 128
Score = 200 (75.5 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 61/177 (34%), Positives = 94/177 (53%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA-L 88
T+++V ++ ++ D +L +LF + G SV+V RD S + S G+G+V Y A +A L
Sbjct: 35 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVL 93
Query: 89 D---------VLNFTPLNNKSIRIM-YSHRDPSIR---KSGTGN--IFIKNLDKSIDHKA 133
D VL K R+ R +R KS I+IKNLD++I+ +
Sbjct: 94 DLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEK 153
Query: 134 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
L + FSSFG+I K+ + GQ KGFG V F + E A A+D++NG ++ K + V
Sbjct: 154 LKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHV 209
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 311 (114.5 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 64/117 (54%), Positives = 87/117 (74%)
Query: 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 344
QKK E + ELK +FEQ ++ + ++QG+NLY+KNL DSID E+L++ FS FGTITS KVM
Sbjct: 1 QKKVEWQTELKHKFEQMKQDKITRYQGVNLYVKNLDDSID-ERLRKQFSPFGTITSAKVM 59
Query: 345 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQF 401
+ G SK GF+ FS+ EEA +A+ EMNGK++ +KPLYVA+AQ KEE + L Q+
Sbjct: 60 ME-GGHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQY 115
Score = 188 (71.2 bits), Expect = 1.0e-44, Sum P(2) = 1.0e-44
Identities = 39/93 (41%), Positives = 65/93 (69%)
Query: 483 IPRRDASVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMD 542
+P+ + G +TA + LA+A P++Q+ +LGE L+PL++ L A K+TGMLLE+D
Sbjct: 234 VPQYKYAAGGQEHLTA--SMLASAPPQEQKQMLGEWLFPLIQVLHPSPAGKITGMLLEID 291
Query: 543 QTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 575
+E+LH+L SPE+L +KV EA+ +L++ ++A
Sbjct: 292 NSELLHMLASPESLHSKVDEAVALLQAHQVKEA 324
Score = 188 (71.2 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 44/93 (47%), Positives = 58/93 (62%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N++VKNLD+S DE L+K F +GTITSA VM +G G SK FGF+ F + ++A KAV +
Sbjct: 29 NLYVKNLDDSI-DERLRKQFSPFGTITSAKVMMEG-GHSKRFGFICFSSHEEAFKAVMEM 86
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAM 302
NGK + YV AQ K E + L Q+ M
Sbjct: 87 NGKIVATKPLYVALAQHKEECQTHLTNQYMHRM 119
Score = 163 (62.4 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN 167
+D R G N+++KNLD SID + L FS FG I S K+ +G G SK FGF+ F +
Sbjct: 19 QDKITRYQGV-NLYVKNLDDSIDER-LRKQFSPFGTITSAKVMMEG-GHSKRFGFICFSS 75
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERET 201
E A A+ ++NG ++ K ++V K+E +T
Sbjct: 76 HEEAFKAVMEMNGKIVATKPLYVALAQHKEECQT 109
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 87/189 (46%), Positives = 136/189 (71%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 176
+G I+IKNL++SID+KA++DTFS FGNIL+C +A D G S+G+GFV F+++E+A+ AI+
Sbjct: 112 SGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIE 171
Query: 177 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 236
K+NGML N+++V V F+ +++RE T F N++VKNL E T++ L+++F YG IT
Sbjct: 172 KVNGMLCNNQKVHVVKFIPRRDREQEKA-THFKNLYVKNLSEEFTEQHLREMFEPYGRIT 230
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW-YVGKAQKKSEREQELK 295
S +M D +G+S+ FGFV +EN A AV L+GK+ D ++ YV +A K+ER+QE+
Sbjct: 231 SHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEIN 290
Query: 296 GQFEQAMKE 304
+ E+ ++
Sbjct: 291 RKLEERKRQ 299
Score = 278 (102.9 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 64/196 (32%), Positives = 111/196 (56%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+++KNL+ S ++ + F +G I + V +D DG S+ +GFV+F++ + A A+E +N
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G ++++ +V K + +REQE F+ NLY+KNL + ++ L+E
Sbjct: 175 GMLCNNQKVHVVKFIPRRDREQEKATHFK-------------NLYVKNLSEEFTEQHLRE 221
Query: 331 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 389
+F +G ITS K+M D G S+ GFVA+ P+ A A+ ++GK + +K LYVA A
Sbjct: 222 MFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALS 281
Query: 390 KEERRARLQAQFSQMR 405
K ER+ + + + +
Sbjct: 282 KAERQQEINRKLEERK 297
Score = 245 (91.3 bits), Expect = 5.6e-20, P = 5.6e-20
Identities = 58/190 (30%), Positives = 102/190 (53%)
Query: 16 NGVAAGASGNQFLTTS-LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
+G G+ GN + +Y+ +L+ ++ + +YD FS G +L+ V +D S GYG
Sbjct: 98 SGSTGGSGGNSSPDSGKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKD-EDGNSRGYG 156
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIM--YSHRDPSIRKSGT-GNIFIKNLDKSIDH 131
+V++ + A A++ +N NN+ + ++ RD K+ N+++KNL +
Sbjct: 157 FVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYVKNLSEEFTE 216
Query: 132 KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND-KQVFV 190
+ L + F +G I S K+ D G+S+ FGFV +EN +SA A+ L+G + D K ++V
Sbjct: 217 QHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYV 276
Query: 191 GHFLRKQERE 200
L K ER+
Sbjct: 277 ARALSKAERQ 286
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
Identities = 84/127 (66%), Positives = 102/127 (80%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A+ + + SLYVGDL +VT++ LY+ FS G VLS+RVCRD+ TRRSLGY YVN+ P
Sbjct: 3 AAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQP 62
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
ADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+DTFS+F
Sbjct: 63 ADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAF 122
Query: 142 GNILSCK 148
GNILSCK
Sbjct: 123 GNILSCK 129
Score = 141 (54.7 bits), Expect = 9.4e-09, P = 9.4e-09
Identities = 33/120 (27%), Positives = 63/120 (52%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G +LS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+N +I K + + +R+ K+ NVF+KNLD+S ++ L F +G I S
Sbjct: 72 MNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Score = 120 (47.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 44/136 (32%), Positives = 69/136 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L T+ L + F G + S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 269 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVIK---GKPIRIMWSQRDPSLR-------KSGVG-----NVFIKNLDKSIDNK 113
Query: 327 KLKELFSEFGTITSCK 342
L + FS FG I SCK
Sbjct: 114 ALYDTFSAFGNILSCK 129
Score = 114 (45.2 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + +LY+ +L + + L E FS G + S +V RD + S G +V F
Sbjct: 1 MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLR 94
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
Identities = 83/126 (65%), Positives = 100/126 (79%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DTFS+FG
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG 123
Query: 143 NILSCK 148
NILSCK
Sbjct: 124 NILSCK 129
Score = 145 (56.1 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 36/130 (27%), Positives = 66/130 (50%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYD 117
Query: 228 IFGEYGTITS 237
F +G I S
Sbjct: 118 TFSAFGNILS 127
Score = 122 (48.0 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 45/136 (33%), Positives = 69/136 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
+++V +L T+ L + F G I S V RD +S + +VNF+ DA +A++
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 269 LNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+N FD + GK + S+R+ L+ K V N++IKNL SID++
Sbjct: 72 MN---FDVIK---GKPVRIMWSQRDPSLR-------KSGVG-----NIFIKNLDKSIDNK 113
Query: 327 KLKELFSEFGTITSCK 342
L + FS FG I SCK
Sbjct: 114 ALYDTFSAFGNILSCK 129
Score = 113 (44.8 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 396 (144.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 79/154 (51%), Positives = 109/154 (70%)
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET-VAIKTK 207
+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++VFVG F ++ERE + K K
Sbjct: 43 VVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAK 101
Query: 208 -FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
F NV++KN E DE LK++F ++G S VMRD +GKSK FGFV++E +DA KAV
Sbjct: 102 EFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 161
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
E +NGK+ + +VG+AQKK ER+ ELK +FEQ
Sbjct: 162 EEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
Score = 354 (129.7 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 77/167 (46%), Positives = 111/167 (66%)
Query: 239 VVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 298
+V+ D +G SK + FV+FE + A KA+E +NG +DR+ +VG+ + + ERE EL +
Sbjct: 42 IVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK- 99
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358
KE N+YIKN G+ +DDE LKELFS+FG S KVMRDP+G SKG GFV+
Sbjct: 100 ---AKEFT------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVS 150
Query: 359 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
+ E+A++A+ EMNGK I K ++V AQ+K ER+A L+ +F Q++
Sbjct: 151 YEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLK 197
Score = 230 (86.0 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 50/148 (33%), Positives = 84/148 (56%)
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-MYSHRDPSIRKSGTG-----NIFIK 123
S GY +V++ A +A++ +N LN++ + + + R + G N++IK
Sbjct: 50 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIK 109
Query: 124 NLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
N + +D ++L + FS FG LS K+ D +G+SKGFGFV +E E A A++++NG I
Sbjct: 110 NFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEI 169
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFNNV 211
+ K +FVG +K ER+ +K KF +
Sbjct: 170 SGKIIFVGRAQKKVERQA-ELKRKFEQL 196
Score = 131 (51.2 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
GA +F T++Y+ + V D L +LFSQ G+ LSV+V RD +S G+G+V+Y
Sbjct: 97 GAKAKEF--TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEK 153
Query: 81 PADAARALDVLNFTPLNNKSI 101
DA +A++ +N ++ K I
Sbjct: 154 HEDANKAVEEMNGKEISGKII 174
Score = 44 (20.5 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
Identities = 8/8 (100%), Positives = 8/8 (100%)
Query: 141 FGNILSCK 148
FGNILSCK
Sbjct: 2 FGNILSCK 9
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 267 (99.0 bits), Expect = 2.3e-22, P = 2.3e-22
Identities = 69/175 (39%), Positives = 99/175 (56%)
Query: 75 YVNYANPADAARALDVLNFTPLNN-KSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
YV +P D A+ F+P SIR+ RD R+S G ++ N + D +
Sbjct: 9 YVGDLHP-DVTEAMLYEKFSPAGPILSIRVC---RDMITRRS-LGYAYV-NFQQPADAER 62
Query: 134 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 193
DT + F I + D +G SKG+GFV FE +E+A+ AI+K+NGML+ND++VFVG F
Sbjct: 63 ALDTMN-FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 120
Query: 194 LRKQERET-VAIKTK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 246
++ERE + + K F NV++KN E DE LK +FG++G S VM D G
Sbjct: 121 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 225 (84.3 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PADA RALD
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 91 LNFTPLNNKSI 101
+NF + K +
Sbjct: 67 MNFDVIKGKPV 77
Score = 209 (78.6 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 49/118 (41%), Positives = 71/118 (60%)
Query: 232 YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 291
+ I V+ D +G SK +GFV+FE + A +A+E +NG +DR+ +VG+ + + ERE
Sbjct: 69 FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE 127
Query: 292 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
EL + KE N+YIKN G+ +DDE+LK+LF +FG S KVM D SG
Sbjct: 128 AELGAR----AKEFT------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 124 (48.7 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 30/92 (32%), Positives = 48/92 (52%)
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSI--RKSGTGNIFIK 123
S GYG+V++ A RA++ +N LN++ + + R+ + R N++IK
Sbjct: 84 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 143
Query: 124 NLDKSIDHKALHDTFSSFGNILSCKIATDGSG 155
N + +D + L D F FG LS K+ TD SG
Sbjct: 144 NFGEDMDDERLKDLFGKFGPALSVKVMTDESG 175
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 31/93 (33%), Positives = 49/93 (52%)
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
Y+ N D E+ + + F I V+ D +G SKG GFV F T E A RA+ +MNG
Sbjct: 51 YV-NFQQPADAERALDTMN-FDVIKGKPVVCDENG-SKGYGFVHFETQEAAERAIEKMNG 107
Query: 375 KMIVSKPLYVAVAQRKEERRARLQAQFSQMRPV 407
++ + ++V + ++ER A L A+ + V
Sbjct: 108 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNV 140
Score = 92 (37.4 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
++++ +L + L++ FS G ILS ++ D + +S G+ +V F+ A+ A+D
Sbjct: 7 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 66
Query: 178 LNGMLINDKQV 188
+N +I K V
Sbjct: 67 MNFDVIKGKPV 77
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 73/112 (65%), Positives = 92/112 (82%)
Query: 77 NYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHD 136
N+ PADA RALD +NF + K IRIM+S RDPS+RKSG GN+FIKNLDKSID+KAL+D
Sbjct: 2 NFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYD 61
Query: 137 TFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
TFS+FGNILSCK+ D +G SKG+ FV FE +E+A AI+K+NGML+ND++V
Sbjct: 62 TFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 160 (61.4 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 39/114 (34%), Positives = 63/114 (55%)
Query: 165 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 224
F+ A+ A+D +N +I K + + +R+ K+ NVF+KNLD+S ++
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRI----MWSQRDPSLRKSGVGNVFIKNLDKSIDNKA 58
Query: 225 LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 278
L F +G I S V+ D +G SK + FV+FE + A KA+E +NG +DR+
Sbjct: 59 LYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRK 111
Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 33/65 (50%), Positives = 45/65 (69%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
N++IKNL SID++ L + FS FG I SCKV+ D +G SKG FV F T E A +A+ +M
Sbjct: 44 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKM 102
Query: 373 NGKMI 377
NG ++
Sbjct: 103 NGMLL 107
Score = 99 (39.9 bits), Expect = 0.00031, P = 0.00031
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++++ +LD ++ + LYD FS G +LS +V D S GY +V++ A +A++
Sbjct: 44 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEK 101
Query: 91 LNFTPLNNKSI 101
+N LN++ +
Sbjct: 102 MNGMLLNDRKV 112
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 388 (141.6 bits), Expect = 6.3e-36, P = 6.3e-36
Identities = 73/106 (68%), Positives = 88/106 (83%)
Query: 67 TRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLD 126
TRRSLGY YVN+ PADA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLD
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 127 KSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ 172
KSID+KAL+DTFS+FGNILSCK+ D +G SKG+GFV FE +E+A+
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAE 107
Score = 154 (59.3 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 48/123 (39%), Positives = 68/123 (55%)
Query: 247 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK--SEREQELKGQFEQAMKE 304
+S + +VNF+ DA +A++ +N FD + GK + S+R+ L+ K
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMN---FDVIK---GKPVRIMWSQRDPSLR-------KS 51
Query: 305 TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEE 364
V N++IKNL SID++ L + FS FG I SCKV+ D +G SKG GFV F T E
Sbjct: 52 GVG-----NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEA 105
Query: 365 ASR 367
A R
Sbjct: 106 AER 108
Score = 148 (57.2 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/109 (33%), Positives = 60/109 (55%)
Query: 156 QSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKN 215
+S G+ +V F+ A+ A+D +N +I K V + +R+ K+ N+F+KN
Sbjct: 5 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKN 60
Query: 216 LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
LD+S ++ L F +G I S V+ D +G SK +GFV+FE + A +
Sbjct: 61 LDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAER 108
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 285 (105.4 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 60/168 (35%), Positives = 96/168 (57%)
Query: 15 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
PNG G +G T+L V L N+T + LF +G + S ++ RD T +SLGY
Sbjct: 23 PNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGY 82
Query: 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
G+VNY++P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKE 140
Query: 134 LHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
+ FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 141 MEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 215 (80.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 158 (60.7 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 48/188 (25%), Positives = 94/188 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+ V L ++ T ++ K +FG G I S ++RD + G+ F N D A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI-TGQSLGY-GFVNYSDPNDADKAI 97
Query: 270 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
N G K Q K+ +K + + ++ + NLY+ L ++ +++
Sbjct: 98 NTLN--------GLKLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMSQKEM 141
Query: 329 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 385
++LFS++G I + +++ D + G+S+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 142 EQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVK 201
Query: 386 VAQRKEER 393
A ++
Sbjct: 202 FANNPSQK 209
Score = 129 (50.5 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 270 NGKKFDDREWYVG-KAQKK 287
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00095
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 12 MSGPNGV--AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
MSG GV + GA+G + ++V +L +S L+ LF G V +V+V RD +T +
Sbjct: 267 MSGLAGVGLSGGAAGAGWC---IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 323
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L + +++ +
Sbjct: 324 CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 359
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 285 (105.4 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 60/168 (35%), Positives = 96/168 (57%)
Query: 15 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
PNG G +G T+L V L N+T + LF +G + S ++ RD T +SLGY
Sbjct: 23 PNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGY 82
Query: 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
G+VNY++P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKE 140
Query: 134 LHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
+ FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 141 MEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 215 (80.7 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 158 (60.7 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 48/188 (25%), Positives = 94/188 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+ V L ++ T ++ K +FG G I S ++RD + G+ F N D A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKI-TGQSLGY-GFVNYSDPNDADKAI 97
Query: 270 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
N G K Q K+ +K + + ++ + NLY+ L ++ +++
Sbjct: 98 NTLN--------GLKLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMSQKEM 141
Query: 329 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 385
++LFS++G I + +++ D + G+S+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 142 EQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVK 201
Query: 386 VAQRKEER 393
A ++
Sbjct: 202 FANNPSQK 209
Score = 129 (50.5 bits), Expect = 1.4e-35, Sum P(2) = 1.4e-35
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 270 NGKKFDDREWYVG-KAQKK 287
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00095
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 12 MSGPNGV--AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
MSG GV + GA+G + ++V +L +S L+ LF G V +V+V RD +T +
Sbjct: 267 MSGLAGVGLSGGAAGAGWC---IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 323
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L + +++ +
Sbjct: 324 CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 359
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 284 (105.0 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 60/168 (35%), Positives = 96/168 (57%)
Query: 15 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
PNG G +G T+L V L N+T + LF +G + S ++ RD T +SLGY
Sbjct: 23 PNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGY 82
Query: 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
G+VNY++P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKE 140
Query: 134 LHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
+ FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 211 (79.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 270 NGKKFDDREWYVG-KAQKK 287
NG + +R V K K+
Sbjct: 347 NGYRLGERVLQVSFKTSKQ 365
Score = 128 (50.1 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 284 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 343
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K+ +
Sbjct: 344 ASLNGYRLGERVLQVSFKTSKQHK 367
Score = 126 (49.4 bits), Expect = 5.0e-14, Sum P(2) = 5.0e-14
Identities = 27/95 (28%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGK--MIVSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ + ++P+ V A ++ QA +Q+
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQKTG--QALLTQL 218
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00096
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 12 MSGPNGV--AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
MSG GV + GA+G + ++V +L +S L+ LF G V +V+V RD +T +
Sbjct: 268 MSGLAGVGLSGGAAGAGWC---IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 324
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L + +++ +
Sbjct: 325 CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 360
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 284 (105.0 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 60/168 (35%), Positives = 96/168 (57%)
Query: 15 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
PNG G +G T+L V L N+T + LF +G + S ++ RD T +SLGY
Sbjct: 23 PNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGY 82
Query: 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
G+VNY++P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKE 140
Query: 134 LHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
+ FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 211 (79.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 270 NGKKFDDREWYVG-KAQKK 287
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGK--MIVSKPLYVAVAQRKEER 393
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 30/90 (33%), Positives = 43/90 (47%)
Query: 112 IRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 169
+R G G IF+ NL D L F FG + + K+ D + + KGFGFV N +
Sbjct: 277 VRGCGGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 336
Query: 170 SAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
A AI LNG + ++ + V KQ +
Sbjct: 337 EAAMAIASLNGYRLGERVLQVSFKTSKQHK 366
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 284 (105.0 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 60/168 (35%), Positives = 96/168 (57%)
Query: 15 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
PNG G +G T+L V L N+T + LF +G + S ++ RD T +SLGY
Sbjct: 23 PNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGY 82
Query: 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
G+VNY++P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKE 140
Query: 134 LHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
+ FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 211 (79.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 270 NGKKFDDREWYVG-KAQKK 287
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGK--MIVSKPLYVAVAQRKEER 393
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00095
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 12 MSGPNGV--AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
MSG GV + GA+G + ++V +L +S L+ LF G V +V+V RD +T +
Sbjct: 267 MSGLAGVGLSGGAAGAGWC---IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 323
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L + +++ +
Sbjct: 324 CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 359
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 284 (105.0 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 60/168 (35%), Positives = 96/168 (57%)
Query: 15 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
PNG G +G T+L V L N+T + LF +G + S ++ RD T +SLGY
Sbjct: 23 PNGPLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGY 82
Query: 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
G+VNY++P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K
Sbjct: 83 GFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKE 140
Query: 134 LHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
+ FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 141 MEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 211 (79.3 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 46/157 (29%), Positives = 88/157 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ F S G+I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ + ++++++F +YG I T
Sbjct: 100 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 133 (51.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/77 (36%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ ++ K LF G I SCK++RD +G S G GFV +S P +A +A+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLKLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 40 NLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG K + V A+ S
Sbjct: 100 LNGLKLQTKTIKVSYARPSS 119
Score = 129 (50.5 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 270 NGKKFDDREWYVG-KAQKK 287
NG + +R V K K+
Sbjct: 346 NGYRLGERVLQVSFKTSKQ 364
Score = 128 (50.1 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 283 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 342
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K+ +
Sbjct: 343 ASLNGYRLGERVLQVSFKTSKQHK 366
Score = 123 (48.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ +++++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGK--MIVSKPLYVAVAQRKEER 393
+NG+ + ++P+ V A ++
Sbjct: 186 LNGQKPLGAAEPITVKFANNPSQK 209
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00095
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 12 MSGPNGV--AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
MSG GV + GA+G + ++V +L +S L+ LF G V +V+V RD +T +
Sbjct: 267 MSGLAGVGLSGGAAGAGWC---IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK 323
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L + +++ +
Sbjct: 324 CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 359
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 279 (103.3 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 60/160 (37%), Positives = 95/160 (59%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 221 (82.9 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 135 (52.6 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 325 NGYRLGDRVLQVSFKTNKTHK 345
Score = 131 (51.2 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 262 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 321
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 322 ASLNGYRLGDRVLQVSFKTNKTHK 345
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 37/129 (28%), Positives = 53/129 (41%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDH 131
Y N P A+ F+P+ + + P GTG IF+ NL D
Sbjct: 219 YQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADE 276
Query: 132 KALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
L F FG + + K+ D + + KGFGFV N + A AI LNG + D+ + V
Sbjct: 277 SILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 336
Query: 191 GHFLRKQER 199
K +
Sbjct: 337 SFKTNKTHK 345
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 279 (103.3 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 60/160 (37%), Positives = 95/160 (59%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 221 (82.9 bits), Expect = 2.6e-24, Sum P(2) = 2.6e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 135 (52.6 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 131 (51.2 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 279 (103.3 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 60/160 (37%), Positives = 95/160 (59%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 221 (82.9 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 135 (52.6 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 133 (51.9 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 339 NGYRLGDRVLQVSFKTNKTHK 359
Score = 131 (51.2 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 126 (49.4 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 122 (48.0 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 276 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 335
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 336 ASLNGYRLGDRVLQVSFKTNKTHK 359
Score = 117 (46.2 bits), Expect = 0.00072, P = 0.00072
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 116 GTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN 173
GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 274 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 333
Query: 174 AIDKLNGMLINDKQVFVGHFLRKQER 199
AI LNG + D+ + V K +
Sbjct: 334 AIASLNGYRLGDRVLQVSFKTNKTHK 359
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 279 (103.3 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 59/169 (34%), Positives = 95/169 (56%)
Query: 15 PNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
PNG +G T+L V L N+T + LF +G++ S ++ RD T +SLGY
Sbjct: 22 PNGPVISTNGATDDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGY 81
Query: 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKA 133
G+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K
Sbjct: 82 GFVNYVDPNDADKAINTLNGLKLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMSQKD 139
Query: 134 LHDTFSSFGNILSCKIATDG--SGQSKGFGFVQFENKESAQNAIDKLNG 180
+ FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 140 MEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNG 188
Score = 210 (79.0 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 46/158 (29%), Positives = 89/158 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + A AI+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
LNG+ + K + V + + +I+ N++V L ++ + +D++++F +YG I +
Sbjct: 99 LNGLKLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMSQKDMEQLFSQYGRIIT 152
Query: 238 AVVMRDG--DGKSKCFGFVNFENADDAAKAVEALNGKK 273
+ ++ D G S+ GF+ F+ ++A +A++ LNG+K
Sbjct: 153 SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQK 190
Score = 163 (62.4 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 55/202 (27%), Positives = 97/202 (48%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ K +FG G I S ++RD G+S +GFVN+ + +DA KA+
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LNG K + V A+ S ++ + + +T+ + K++ E+L
Sbjct: 99 LNGLKLQTKTIKVSYARPSSASIRDAN-LYVSGLPKTMSQ--------KDM------EQL 143
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVAV 386
+ T + V + +GIS+G GF+ F EA A+ +NG+ + ++P+ V
Sbjct: 144 FSQYGRIIT-SRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKF 202
Query: 387 AQRKEERRARLQAQFSQMRPVA 408
A ++ QA +Q+ A
Sbjct: 203 ANNPSQKTG--QALLTQLYQTA 222
Score = 133 (51.9 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 31/79 (39%), Positives = 44/79 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 270 NGKKFDDREWYVG-KAQKK 287
NG + DR V K K+
Sbjct: 338 NGYRLGDRVLQVSFKTSKQ 356
Score = 128 (50.1 bits), Expect = 8.1e-35, Sum P(2) = 8.1e-35
Identities = 28/84 (33%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAI 334
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K+ +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTSKQHK 358
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 115 SGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 172
+G G IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 272 TGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAA 331
Query: 173 NAIDKLNGMLINDKQVFVGHFLRKQER 199
AI LNG + D+ + V KQ +
Sbjct: 332 MAIASLNGYRLGDRVLQVSFKTSKQHK 358
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 383 (139.9 bits), Expect = 2.5e-35, P = 2.5e-35
Identities = 73/115 (63%), Positives = 89/115 (77%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
DA RALD +NF + K +RIM+S RDPS+RKSG GNIFIKNLDKSID+KAL+DT
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 118
Score = 128 (50.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 32/118 (27%), Positives = 61/118 (51%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
+PS ++++ +L + L++ FS G ILS ++ D + +S G+ +V F+
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL 225
A+ A+D +N +I K V + +R+ K+ N+F+KNLD+S ++ L
Sbjct: 62 PADAERALDTMNFDVIKGKPVRI----MWSQRDPSLRKSGVGNIFIKNLDKSIDNKAL 115
Score = 113 (44.8 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 31/94 (32%), Positives = 46/94 (48%)
Query: 302 MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFS 360
M + + +LY+ +L + + L E FS G I S +V RD + S G +V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
P +A RAL MN +I KP+ + +QR R
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR 94
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 277 (102.6 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 37 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 96 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 153
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 219 (82.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 132 (51.5 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 350 NGYRLGDRVLQVSFKTNKTHK 370
Score = 129 (50.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKTS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 315
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 316 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 370
Score = 119 (46.9 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKTHK 370
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 277 (102.6 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 32 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 91 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 148
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 219 (82.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 132 (51.5 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 129 (50.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 253 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 310
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 311 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 119 (46.9 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 277 (102.6 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 32 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 91 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 148
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 219 (82.2 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 132 (51.5 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHK 365
Score = 129 (50.5 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 253 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 310
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 311 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 365
Score = 119 (46.9 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 282 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 341
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 342 ASLNGYRLGDRVLQVSFKTNKAHK 365
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 277 (102.6 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 37 PSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 96 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 153
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 219 (82.2 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 132 (51.5 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 350 NGYRLGDRVLQVSFKTNKAHK 370
Score = 129 (50.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 258 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 315
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 316 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 370
Score = 119 (46.9 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 287 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 346
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 347 ASLNGYRLGDRVLQVSFKTNKAHK 370
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 277 (102.6 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 25 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 141
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 219 (82.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 129 (50.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 218
Score = 128 (50.1 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 119 (46.9 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 119 (46.9 bits), Expect = 0.00046, P = 0.00046
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 266 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 323
Query: 152 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 324 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 277 (102.6 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 30 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 88
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 89 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 146
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 147 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 193
Score = 219 (82.2 bits), Expect = 7.4e-24, Sum P(2) = 7.4e-24
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 105 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 158
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 159 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 195
Score = 132 (51.5 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 330 NGYRLGDRVLQVSFKTNKAHK 350
Score = 129 (50.5 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 131 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 190
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 191 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 223
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 105 LNGLRLQTKTIKVSYAR 121
Score = 124 (48.7 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 105 LNGLRLQTKTIKVSYARPSS 124
Score = 119 (46.9 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 267 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 326
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 327 ASLNGYRLGDRVLQVSFKTNKAHK 350
Score = 119 (46.9 bits), Expect = 0.00041, P = 0.00041
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 244 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 301
Query: 152 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 302 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 350
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 277 (102.6 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 25 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 84 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 141
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 219 (82.2 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 132 (51.5 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 352 NGYRLGDRVLQVSFKTNKAHK 372
Score = 129 (50.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 186 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 218
Score = 128 (50.1 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 124 (48.7 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 119 (46.9 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 289 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 348
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 349 ASLNGYRLGDRVLQVSFKTNKAHK 372
Score = 119 (46.9 bits), Expect = 0.00046, P = 0.00046
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 266 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 323
Query: 152 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 324 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 372
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 284 (105.0 bits), Expect = 7.6e-35, Sum P(2) = 7.6e-35
Identities = 59/159 (37%), Positives = 94/159 (59%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
+G++ T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY P
Sbjct: 61 NGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPK 120
Query: 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS FG
Sbjct: 121 DAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQFG 178
Query: 143 NILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 179 RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNG 217
Score = 219 (82.2 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 49/166 (29%), Positives = 93/166 (56%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P+ + N+ + L +++ + L F S G I SCK+ D +GQS G+GFV +
Sbjct: 60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+ A+ AI+ LNG+ + K + V + + +I+ N++V L ++ T ++L+++
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQL 173
Query: 229 FGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
F ++G I TS +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 174 FSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQK 219
Score = 136 (52.9 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 132 (51.5 bits), Expect = 7.6e-35, Sum P(2) = 7.6e-35
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 131 (51.2 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINT 128
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 128 (50.1 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS+FG I + +++ D +G+S+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKG 214
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA S +
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKSS--QALLSHL 247
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 35/115 (30%), Positives = 52/115 (45%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P+ +GTG IF+ NL D L F FG +
Sbjct: 275 AYGVKRFSPMTIDGVTSLAGINLPA--HAGTGWCIFVYNLAPDADENVLWQMFGPFGAVT 332
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 333 NVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 121 (47.7 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAI 363
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 275 (101.9 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 57/152 (37%), Positives = 90/152 (59%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N++ +L LFS +G+V S ++ RD SLGYG+VNY NP DA RA+
Sbjct: 34 TNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIS 93
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ PS N++I L K++ K + + F +G I++ ++
Sbjct: 94 TLNGLRLQSKTIKVSYAR--PSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRV 151
Query: 150 ATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
D SG S+G F++F+ + A++AI LNG
Sbjct: 152 LVDQASGLSRGVAFIRFDKRAEAEDAIKDLNG 183
Score = 210 (79.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 47/157 (29%), Positives = 86/157 (54%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ L FSS G + S K+ D +G S G+GFV + N A+ AI
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
LNG+ + K + V + + +++ K N+++ L ++ T +D++++FG YG I +
Sbjct: 95 LNGLRLQSKTIKVSY--ARPSSDSI----KDANLYISGLPKTMTQKDVEEMFGRYGRIIN 148
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK 273
+ V+ D G S+ F+ F+ +A A++ LNG+K
Sbjct: 149 SRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQK 185
Score = 135 (52.6 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 32/98 (32%), Positives = 55/98 (56%)
Query: 293 ELKGQFEQAMK-ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGI 350
++ +E M E +D NL + L ++ ++L+ LFS G + S K++RD +G
Sbjct: 16 DMSNGYEDHMADELIDS--KTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGH 73
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
S G GFV + P +A RA++ +NG + SK + V+ A+
Sbjct: 74 SLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYAR 111
Score = 131 (51.2 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 257 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAI 316
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 317 ASLNGYRLGDKILQVSFKTSKSHK 340
Score = 124 (48.7 bits), Expect = 5.9e-34, Sum P(2) = 5.9e-34
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV + ++AA A+ +L
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASL 319
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 320 NGYRLGDKILQVSFKTSKSHK 340
Score = 122 (48.0 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ + ++L+ +F G + SA ++RD G S +GFVN+ N +DA +A+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ S+
Sbjct: 95 LNGLRLQSKTIKVSYARPSSD 115
Score = 118 (46.6 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 33/95 (34%), Positives = 45/95 (47%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 152
F+P++ + M P SG IFI NL + D L F FG + + K+ D
Sbjct: 234 FSPMSVDHMSGMSGVNVPGNSSSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRD 292
Query: 153 -GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186
+ + KGFGFV + E A AI LNG + DK
Sbjct: 293 FNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDK 327
Score = 116 (45.9 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 365
D + NLYI L ++ + ++E+F +G I + +V+ D SG+S+G F+ F EA
Sbjct: 115 DSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEA 174
Query: 366 SRALAEMNGK 375
A+ ++NG+
Sbjct: 175 EDAIKDLNGQ 184
Score = 81 (33.6 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A S + +LY+ L +T + ++F + G++++ RV D ++ S G ++ +
Sbjct: 110 ARPSSDSIKDANLYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFD 169
Query: 80 NPADAARALDVLN 92
A+A A+ LN
Sbjct: 170 KRAEAEDAIKDLN 182
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 272 (100.8 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 31 SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 215 (80.7 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 49/157 (31%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 133 (51.9 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 129 (50.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 126 (49.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 124 (48.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 272 (100.8 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 31 SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 215 (80.7 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 49/157 (31%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 190
Score = 133 (51.9 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 338 NGYRLGDRVLQVSFKTNKTHK 358
Score = 129 (50.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 29/77 (37%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 126 (49.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 186 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 218
Score = 124 (48.7 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 122 (48.0 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 275 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 334
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 335 ASLNGYRLGDRVLQVSFKTNKTHK 358
Score = 119 (46.9 bits), Expect = 0.00043, P = 0.00043
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 246 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 303
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 358
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 271 (100.5 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 56/152 (36%), Positives = 88/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ + K N++I L +S+ K + D FS FG I++ ++
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRSMTQKDVEDMFSRFGRIINSRV 137
Query: 150 ATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 180
D + G S+G F++F+ + A+ AI NG
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 194 (73.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 46/160 (28%), Positives = 82/160 (51%)
Query: 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I+ LNG+ + K + V + + E + K N+++ L S T +D++ +F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRSMTQKDVEDMFSRFGR 131
Query: 235 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 273
I ++ V+ D G S+ F+ F+ +A +A+ NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHK 171
Score = 134 (52.2 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 134 (52.2 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 298 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 355
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 4.9e-34, Sum P(2) = 4.9e-34
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 179 NGMLINDKQVFVGHFLRKQER 199
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
MSG +GV GN +++ +L + + L+ +F G V +V+V RD +T +
Sbjct: 228 MSGLSGV--NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L +K +++ +
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 115 (45.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 371
NLYI L S+ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITN 166
Query: 372 MNGKMIV--SKPLYVAVAQRKEERR 394
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 267 (99.0 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 54/152 (35%), Positives = 88/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G++ S ++ RD SLGYG+VNY DA RA++
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ + K N++I L +++ K + D FS FG I++ ++
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSPFGRIINSRV 137
Query: 150 ATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 180
D + G S+G F++F+ + A+ AI NG
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 196 (74.1 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 46/160 (28%), Positives = 84/160 (52%)
Query: 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174
G N+ + L +++ + L FSS G I S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSPFGR 131
Query: 235 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 273
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 138 (53.6 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 35/97 (36%), Positives = 53/97 (54%)
Query: 298 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 355
+E M E D NL + L ++ E+L+ LFS G I S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYG 64
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 137 (53.3 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEAS A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAI 302
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 131 (51.2 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+L+ +F G I SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 126 (49.4 bits), Expect = 2.8e-33, Sum P(2) = 2.8e-33
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++A+ A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASL 305
Query: 179 NGMLINDKQVFVGHFLRKQER 199
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 111 (44.1 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 371
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 372 MNGKMIV--SKPLYVAVAQRKEERR 394
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 268 (99.4 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 55/152 (36%), Positives = 88/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ + K N++I L +++ K + D FS FG I++ ++
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRNMTQKDVEDMFSRFGRIINSRV 137
Query: 150 ATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 180
D + G S+G F++F+ + A+ AI NG
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 194 (73.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRNMTQKDVEDMFSRFGR 131
Query: 235 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 273
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 134 (52.2 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 134 (52.2 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 298 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 355
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 179 NGMLINDKQVFVGHFLRKQER 199
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
MSG +GV GN +++ +L + + L+ +F G V +V+V RD +T +
Sbjct: 228 MSGLSGV--NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L +K +++ +
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 112 (44.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 371
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 372 MNGKMIV--SKPLYVAVAQRKEERR 394
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 268 (99.4 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 55/152 (36%), Positives = 88/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA++
Sbjct: 28 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 87
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ + K N++I L +++ K + D FS FG I++ ++
Sbjct: 88 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRV 145
Query: 150 ATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 180
D + G S+G F++F+ + A+ AI NG
Sbjct: 146 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 194 (73.4 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 26 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 85
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 86 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 139
Query: 235 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 273
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 140 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 179
Score = 134 (52.2 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 251 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 310
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 311 ASLNGYRLGDKILQVSFKTNKSHK 334
Score = 134 (52.2 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 33/97 (34%), Positives = 53/97 (54%)
Query: 298 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 355
+E M E D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 13 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 72
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
FV + T ++A RA+ +NG + SK + V+ A+ E
Sbjct: 73 FVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSE 109
Score = 129 (50.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 127 (49.8 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 29 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 88
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ SE
Sbjct: 89 LNGLRLQSKTIKVSYARPSSE 109
Score = 120 (47.3 bits), Expect = 0.00029, P = 0.00029
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 313
Query: 179 NGMLINDKQVFVGHFLRKQER 199
NG + DK + V K +
Sbjct: 314 NGYRLGDKILQVSFKTNKSHK 334
Score = 117 (46.2 bits), Expect = 0.00063, P = 0.00063
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
MSG +GV GN +++ +L + + L+ +F G V +V+V RD +T +
Sbjct: 236 MSGLSGV--NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 293
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L +K +++ +
Sbjct: 294 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 327
Score = 112 (44.5 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 371
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 115 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 174
Query: 372 MNGKMIV--SKPLYVAVAQRKEERR 394
NG S+P+ V A + +
Sbjct: 175 FNGHKPPGSSEPITVKFAANPNQNK 199
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 268 (99.4 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 55/152 (36%), Positives = 88/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA++
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ + K N++I L +++ K + D FS FG I++ ++
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRV 164
Query: 150 ATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 180
D + G S+G F++F+ + A+ AI NG
Sbjct: 165 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 194 (73.4 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 45 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 104
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 105 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 158
Query: 235 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 273
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 159 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 198
Score = 134 (52.2 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 270 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 329
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 330 ASLNGYRLGDKILQVSFKTNKSHK 353
Score = 130 (50.8 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ ++L+ LFS G + S K++RD +G S G GFV + T ++A RA+
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 372 MNGKMIVSKPLYVAVAQRKEE 392
+NG + SK + V+ A+ E
Sbjct: 108 LNGLRLQSKTIKVSYARPSSE 128
Score = 129 (50.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 127 (49.8 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 48 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 107
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ SE
Sbjct: 108 LNGLRLQSKTIKVSYARPSSE 128
Score = 120 (47.3 bits), Expect = 0.00032, P = 0.00032
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 332
Query: 179 NGMLINDKQVFVGHFLRKQER 199
NG + DK + V K +
Sbjct: 333 NGYRLGDKILQVSFKTNKSHK 353
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
MSG +GV GN +++ +L + + L+ +F G V +V+V RD +T +
Sbjct: 255 MSGLSGV--NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 312
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L +K +++ +
Sbjct: 313 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 346
Score = 112 (44.5 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 371
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 134 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 193
Query: 372 MNGKMIV--SKPLYVAVAQRKEERR 394
NG S+P+ V A + +
Sbjct: 194 FNGHKPPGSSEPITVKFAANPNQNK 218
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 268 (99.4 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 55/152 (36%), Positives = 88/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ + K N++I L +++ K + D FS FG I++ ++
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
Query: 150 ATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 180
D + G S+G F++F+ + A+ AI NG
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 194 (73.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174
G N+ + L +++ L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I+ LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 INTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 235 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 273
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 134 (52.2 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 29/81 (35%), Positives = 48/81 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ ++L+ LFS G + S K++RD +G S G GFV + T ++A RA+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 372 MNGKMIVSKPLYVAVAQRKEE 392
+NG + SK + V+ A+ E
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 127 (49.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T ++L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 179 NGMLINDKQVFVGHFLRKQER 199
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
MSG +GV GN +++ +L + + L+ +F G V +V+V RD +T +
Sbjct: 228 MSGLSGV--NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L +K +++ +
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 112 (44.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 371
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 372 MNGKMIV--SKPLYVAVAQRKEERR 394
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 267 (99.0 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ + K N++I L +++ K + D FS FG I++ ++
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
Query: 150 ATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 180
D + G S+G F++F+ + A+ AI NG
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 195 (73.7 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174
G N+ + L +++ + L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 ISTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 235 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 273
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 140 (54.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 298 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 355
+E M E D NL + L ++ E+L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
FV + T ++A RA++ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 134 (52.2 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 179 NGMLINDKQVFVGHFLRKQER 199
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
MSG +GV GN +++ +L + + L+ +F G V +V+V RD +T +
Sbjct: 228 MSGISGV--NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L +K +++ +
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 112 (44.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 371
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 372 MNGKMIV--SKPLYVAVAQRKEERR 394
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 267 (99.0 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA+
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ Y+ + K N++I L +++ K + D FS FG I++ ++
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRV 137
Query: 150 ATDGS-GQSKGFGFVQFENKESAQNAIDKLNG 180
D + G S+G F++F+ + A+ AI NG
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 195 (73.7 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174
G N+ + L +++ + L FSS G + S K+ D +G S G+GFV + + A+ A
Sbjct: 18 GRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERA 77
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
I LNG+ + K + V + + E + K N+++ L + T +D++ +F +G
Sbjct: 78 ISTLNGLRLQSKTIKVSY--ARPSSEVI----KDANLYISGLPRTMTQKDVEDMFSRFGR 131
Query: 235 ITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKK 273
I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 132 IINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHK 171
Score = 140 (54.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 298 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 355
+E M E D NL + L ++ E+L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
FV + T ++A RA++ +NG + SK + V+ A+ E
Sbjct: 65 FVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSE 101
Score = 134 (52.2 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKILQVSFKTNKSHK 326
Score = 130 (50.8 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+L+ +F G + SA ++RD G S +GFVN+ A DA +A+
Sbjct: 21 NLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIST 80
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG + + V A+ SE
Sbjct: 81 LNGLRLQSKTIKVSYARPSSE 101
Score = 129 (50.5 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 120 (47.3 bits), Expect = 0.00028, P = 0.00028
Identities = 30/81 (37%), Positives = 39/81 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 179 NGMLINDKQVFVGHFLRKQER 199
NG + DK + V K +
Sbjct: 306 NGYRLGDKILQVSFKTNKSHK 326
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 28/94 (29%), Positives = 50/94 (53%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
MSG +GV GN +++ +L + + L+ +F G V +V+V RD +T +
Sbjct: 228 MSGISGV--NVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
G+G+V N +AA A+ LN L +K +++ +
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319
Score = 112 (44.5 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAE 371
NLYI L ++ + ++++FS FG I + +V+ D + G+S+G F+ F EA A+
Sbjct: 107 NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITS 166
Query: 372 MNGKMIV--SKPLYVAVAQRKEERR 394
NG S+P+ V A + +
Sbjct: 167 FNGHKPPGSSEPITVKFAANPNQNK 191
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 266 (98.7 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY N DA RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ ++ PS N++I L +++ K + D F FG+I++ ++
Sbjct: 80 TLNGLRLQSKTIKVSFAR--PSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRV 137
Query: 150 ATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
D +G S+G F++F+ + A+ AI NG
Sbjct: 138 LVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 206 (77.6 bits), Expect = 3.0e-24, Sum P(2) = 3.0e-24
Identities = 52/170 (30%), Positives = 87/170 (51%)
Query: 107 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQ 164
H D R G N+ + L +++ L FSS G + S K+ D +G S G+GFV
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 165 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 224
+ N + A+ AI+ LNG+ + K + V F R ET+ K N+++ L + T +D
Sbjct: 68 YLNAKDAERAINTLNGLRLQSKTIKVS-FARPSS-ETI----KDANLYISGLPRTMTQKD 121
Query: 225 LKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG K
Sbjct: 122 VEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
Score = 146 (56.5 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 51/189 (26%), Positives = 89/189 (47%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+ V L ++ T ++L+ +F G + SA ++RD G+ F N +A A A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYLNAKDAERAI 78
Query: 270 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
N G + Q K+ +K F + ET+ + NLYI L ++ + +
Sbjct: 79 NTLN--------GLRLQSKT-----IKVSFARPSSETI---KDANLYISGLPRTMTQKDV 122
Query: 329 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVA 385
+++F FG I + +V+ D + G+S+G F+ F EA A+A NG S+P+ V
Sbjct: 123 EDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVK 182
Query: 386 VAQRKEERR 394
A + +
Sbjct: 183 FAANPNQSK 191
Score = 135 (52.6 bits), Expect = 4.1e-34, Sum P(2) = 4.1e-34
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 303 ASLNGYRLGDKTLQVSFKTSKSHK 326
Score = 131 (51.2 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 306 NGYRLGDKTLQVSFKTSKSHK 326
Score = 127 (49.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 31/97 (31%), Positives = 52/97 (53%)
Query: 298 FEQAMKETV-DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSG 355
+E M + D NL + L ++ ++L+ LFS G + S K++RD +G S G G
Sbjct: 5 YEDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYG 64
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
FV + ++A RA+ +NG + SK + V+ A+ E
Sbjct: 65 FVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE 101
Score = 123 (48.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 36/108 (33%), Positives = 49/108 (45%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 152
F+P+ + + S S SG IFI NL + D L F FG + + K+ D
Sbjct: 220 FSPMGVDHMSSISSVNVASSASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRD 278
Query: 153 -GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ + KGFGFV N E A AI LNG + DK + V K +
Sbjct: 279 FNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 326
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 27/100 (27%), Positives = 54/100 (54%)
Query: 6 VQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDL 65
V H + +S N ++ +SG +++ +L + + L+ +F G V +V+V RD
Sbjct: 225 VDHMSSISSVNVASSASSG-----WCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDF 279
Query: 66 STRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
+T + G+G+V N +AA A+ LN L +K++++ +
Sbjct: 280 NTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 319
Score = 77 (32.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 18/73 (24%), Positives = 33/73 (45%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A S +LY+ L +T + D+F G +++ RV D +T S G ++ +
Sbjct: 96 ARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFD 155
Query: 80 NPADAARALDVLN 92
++A A+ N
Sbjct: 156 KRSEAEEAIASFN 168
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 279 (103.3 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 60/160 (37%), Positives = 95/160 (59%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 60 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 119
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 177
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 178 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 224 (83.9 bits), Expect = 6.4e-24, Sum P(2) = 6.4e-24
Identities = 64/226 (28%), Positives = 115/226 (50%)
Query: 57 LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS---IRIMYSHRDP--- 110
++VR+C S RS + + AA + N NN + I + P
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDS 60
Query: 111 -SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
+ S T N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + +
Sbjct: 61 GNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 119
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+ A+ AI+ LNG+ + K + V + + +I+ N++V L ++ T ++L+++
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQL 173
Query: 229 FGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
F +YG I TS +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 174 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Score = 137 (53.3 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
Identities = 31/77 (40%), Positives = 43/77 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 270 NGKKFDDREWYVGKAQK 286
NG + DR V K K
Sbjct: 368 NGYRLGDRVLQVFKTNK 384
Score = 135 (52.6 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 131 (51.2 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 126 (49.4 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 247
Score = 120 (47.3 bits), Expect = 0.00038, P = 0.00038
Identities = 31/78 (39%), Positives = 40/78 (51%)
Query: 116 GTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN 173
GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 303 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 362
Query: 174 AIDKLNGMLINDK--QVF 189
AI LNG + D+ QVF
Sbjct: 363 AIASLNGYRLGDRVLQVF 380
Score = 118 (46.6 bits), Expect = 7.0e-32, Sum P(2) = 7.0e-32
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 370 AEMNGKMIVSKPLYV 384
A +NG + + L V
Sbjct: 365 ASLNGYRLGDRVLQV 379
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 277 (102.6 bits), Expect = 8.0e-34, Sum P(2) = 8.0e-34
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 32 PSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 91 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 148
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 219 (82.2 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 132 (51.5 bits), Expect = 8.0e-34, Sum P(2) = 8.0e-34
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 129 (50.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 119 (46.9 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 119 (46.9 bits), Expect = 0.00047, P = 0.00047
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 273 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 330
Query: 152 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 331 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 277 (102.6 bits), Expect = 8.0e-34, Sum P(2) = 8.0e-34
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 32 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 90
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 91 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 148
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
Score = 219 (82.2 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 107 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 197
Score = 132 (51.5 bits), Expect = 8.0e-34, Sum P(2) = 8.0e-34
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHK 379
Score = 129 (50.5 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 133 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 192
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 193 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 225
Score = 128 (50.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 107 LNGLRLQTKTIKVSYAR 123
Score = 124 (48.7 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 107 LNGLRLQTKTIKVSYARPSS 126
Score = 119 (46.9 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 296 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 355
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 356 ASLNGYRLGDRVLQVSFKTNKAHK 379
Score = 119 (46.9 bits), Expect = 0.00047, P = 0.00047
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 273 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 330
Query: 152 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 331 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 379
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 279 (103.3 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 60/160 (37%), Positives = 95/160 (59%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 59 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 118
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 177 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 221 (82.9 bits), Expect = 5.6e-24, Sum P(2) = 5.6e-24
Identities = 49/157 (31%), Positives = 91/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 128 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 181
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 182 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 135 (52.6 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 133 (51.9 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 366 NGYRLGDRVLQVSFKTNKTHK 386
Score = 131 (51.2 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 68 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 127
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 128 LNGLRLQTKTIKVSYARPSS 147
Score = 126 (49.4 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 213
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 214 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 246
Score = 122 (48.0 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 303 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 362
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 363 ASLNGYRLGDRVLQVSFKTNKTHK 386
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 274 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 331
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 332 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 386
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 277 (102.6 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 48 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 106
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 107 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 164
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 165 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 211
Score = 219 (82.2 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 123 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 176
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 177 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 213
Score = 132 (51.5 bits), Expect = 1.8e-33, Sum P(2) = 1.8e-33
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 361 NGYRLGDRVLQVSFKTNKAHK 381
Score = 129 (50.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 149 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 208
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 209 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 241
Score = 128 (50.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 123 LNGLRLQTKTIKVSYAR 139
Score = 124 (48.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 123 LNGLRLQTKTIKVSYARPSS 142
Score = 123 (48.4 bits), Expect = 0.00017, P = 0.00017
Identities = 35/115 (30%), Positives = 51/115 (44%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P +GTG IF+ NL D L F FG +
Sbjct: 269 AYGVKRFSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 326
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 327 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 381
Score = 119 (46.9 bits), Expect = 4.1e-32, Sum P(2) = 4.1e-32
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 298 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 357
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 358 ASLNGYRLGDRVLQVSFKTNKAHK 381
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 279 (103.3 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 60/160 (37%), Positives = 95/160 (59%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 60 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 119
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 177
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 178 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Score = 224 (83.9 bits), Expect = 2.5e-24, Sum P(2) = 2.5e-24
Identities = 64/226 (28%), Positives = 115/226 (50%)
Query: 57 LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS---IRIMYSHRDP--- 110
++VR+C S RS + + AA + N NN + I + P
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANGPTTINNNCSSPVDS 60
Query: 111 -SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
+ S T N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + +
Sbjct: 61 GNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 119
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+ A+ AI+ LNG+ + K + V + + +I+ N++V L ++ T ++L+++
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQL 173
Query: 229 FGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
F +YG I TS +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 174 FSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQK 219
Score = 135 (52.6 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 129 LNGLRLQTKTIKVSYAR 145
Score = 133 (51.9 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 131 (51.2 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 69 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 128
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 129 LNGLRLQTKTIKVSYARPSS 148
Score = 126 (49.4 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 30/95 (31%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 155 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 214
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 215 LNGQKPPGATEPITVKFANNPSQKTN--QAILSQL 247
Score = 122 (48.0 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 35/115 (30%), Positives = 50/115 (43%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ + + P GTG IF+ NL D L F FG +
Sbjct: 275 AYGVKRFSPMTIDGMTSLAGINIPG--HPGTGWCIFVYNLAPDADESILWQMFGPFGAVT 332
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 333 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 262 (97.3 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 55/152 (36%), Positives = 87/152 (57%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY N DA RA++
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L +K+I++ + PS N++I L +++ K + D F FG I++ ++
Sbjct: 80 TLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRV 137
Query: 150 ATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
D +G S+G F++F+ + A+ AI NG
Sbjct: 138 LVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 200 (75.5 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 49/170 (28%), Positives = 88/170 (51%)
Query: 107 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQ 164
H D R G N+ + L +++ L FSS G + S K+ D +G S G+GFV
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 165 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 224
+ N + A+ AI+ LNG+ + K + V + + E++ K N+++ L + T +D
Sbjct: 68 YLNAKDAERAINTLNGLRLQSKTIKVS--VARPSSESI----KDANLYISGLPRTMTQKD 121
Query: 225 LKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK 273
++ +F +G I ++ V+ D G S+ F+ F+ +A +A+ + NG K
Sbjct: 122 VEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHK 171
Score = 137 (53.3 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 49/189 (25%), Positives = 88/189 (46%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+ V L ++ T ++L+ +F G + SA ++RD G+ F N +A A A+
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVA-GHSLGY-GFVNYLNAKDAERAI 78
Query: 270 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
N G + Q K+ +K + E++ + NLYI L ++ + +
Sbjct: 79 NTLN--------GLRLQSKT-----IKVSVARPSSESI---KDANLYISGLPRTMTQKDV 122
Query: 329 KELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVA 385
+++F FG I + +V+ D + G+S+G F+ F EA A+A NG S+P+ V
Sbjct: 123 EDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVK 182
Query: 386 VAQRKEERR 394
A + +
Sbjct: 183 FAANPNQNK 191
Score = 132 (51.5 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G ++I NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V K +
Sbjct: 303 ASLNGYRLGDKTLQVFFKTSKSHK 326
Score = 128 (50.1 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 306 NGYRLGDKTLQVFFKTSKSHK 326
Score = 126 (49.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 28/100 (28%), Positives = 55/100 (55%)
Query: 6 VQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDL 65
V H + +SG N ++ +SG +++ +L + + L+ +F G V +V+V RD
Sbjct: 225 VDHMSSISGVNVASSASSG-----WCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDF 279
Query: 66 STRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
+T + G+G+V N +AA A+ LN L +K++++ +
Sbjct: 280 NTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVFF 319
Score = 123 (48.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 31/73 (42%), Positives = 38/73 (52%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IFI NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 179 NGMLINDK--QVF 189
NG + DK QVF
Sbjct: 306 NGYRLGDKTLQVF 318
Score = 80 (33.2 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 22/98 (22%), Positives = 47/98 (47%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A S +LY+ L +T + D+F G++++ RV D +T S G ++ +
Sbjct: 96 ARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFD 155
Query: 80 NPADAARALDVLNF--TPLNNKSIRIMYSHRDPSIRKS 115
++A A+ N P +++ I + ++ +P+ K+
Sbjct: 156 KRSEAEEAIASFNGHKPPGSSEPITVKFA-ANPNQNKN 192
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 277 (102.6 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 36 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 94
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 95 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 152
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 153 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 199
Score = 219 (82.2 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 111 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 164
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 165 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 201
Score = 132 (51.5 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 363 NGYRLGDRVLQVSFKTNKAHK 383
Score = 129 (50.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 137 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 196
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 197 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 229
Score = 128 (50.1 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 111 LNGLRLQTKTIKVSYAR 127
Score = 124 (48.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 111 LNGLRLQTKTIKVSYARPSS 130
Score = 119 (46.9 bits), Expect = 7.3e-32, Sum P(2) = 7.3e-32
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 300 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 359
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 360 ASLNGYRLGDRVLQVSFKTNKAHK 383
Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 277 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 334
Query: 152 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 335 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 383
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 278 (102.9 bits), Expect = 3.6e-33, Sum P(2) = 3.6e-33
Identities = 59/160 (36%), Positives = 95/160 (59%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L V L ++T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 59 SGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDP 118
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 176
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 177 GRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 239 (89.2 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 64/224 (28%), Positives = 113/224 (50%)
Query: 57 LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-----KSIRIMYSHRDPS 111
++VR+C S RS + + AA + N NN +I S D
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTAHGSNAINNCSSPIDSG 60
Query: 112 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKES 170
+ N+ + L +S+ + L F S G I SCK+ D +GQS G+GFV + + +
Sbjct: 61 NTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKD 120
Query: 171 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 230
A+ AI+ LNG+ + K + V + + +I+ N++V L ++ T ++L+++F
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFS 174
Query: 231 EYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
+YG I TS +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 175 QYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 138 (53.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L S+ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 128 LNGLRLQTKTIKVSYAR 144
Score = 135 (52.6 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L +S T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 68 NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAINT 127
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 128 LNGLRLQTKTIKVSYARPSS 147
Score = 133 (51.9 bits), Expect = 3.6e-33, Sum P(2) = 3.6e-33
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 367 NGYRLGDRVLQVSFKTNKTHK 387
Score = 125 (49.1 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 154 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKG 213
Query: 372 MNGKM--IVSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ QA SQ+
Sbjct: 214 LNGQKPPAATEPITVKFANNPSQKTN--QAILSQL 246
Score = 122 (48.0 bits), Expect = 5.1e-32, Sum P(2) = 5.1e-32
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 304 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 363
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 364 ASLNGYRLGDRVLQVSFKTNKTHK 387
Score = 118 (46.6 bits), Expect = 0.00064, P = 0.00064
Identities = 30/87 (34%), Positives = 42/87 (48%)
Query: 115 SGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 172
+GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 301 AGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 360
Query: 173 NAIDKLNGMLINDKQVFVGHFLRKQER 199
AI LNG + D+ + V K +
Sbjct: 361 MAIASLNGYRLGDRVLQVSFKTNKTHK 387
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 277 (102.6 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 37 PSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 96 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 153
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 219 (82.2 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 132 (51.5 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 129 (50.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 119 (46.9 bits), Expect = 9.2e-32, Sum P(2) = 9.2e-32
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 278 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 335
Query: 152 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 336 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 277 (102.6 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 59/167 (35%), Positives = 97/167 (58%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+ + GA+ + T+L V L N+T + LF +G++ S ++ RD T +SLGYG
Sbjct: 37 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYG 95
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L
Sbjct: 96 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKEL 153
Query: 135 HDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 154 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
Score = 219 (82.2 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 112 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 202
Score = 132 (51.5 bits), Expect = 4.0e-33, Sum P(2) = 4.0e-33
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 364 NGYRLGDRVLQVSFKTNKAHK 384
Score = 129 (50.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 29/95 (30%), Positives = 56/95 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G+S+G GF+ F EA A+
Sbjct: 138 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKG 197
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 198 LNGQKPSGATEPITVKFANNPSQKSS--QALLSQL 230
Score = 128 (50.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 112 LNGLRLQTKTIKVSYAR 128
Score = 124 (48.7 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 112 LNGLRLQTKTIKVSYARPSS 131
Score = 119 (46.9 bits), Expect = 9.2e-32, Sum P(2) = 9.2e-32
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 301 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 360
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 361 ASLNGYRLGDRVLQVSFKTNKAHK 384
Score = 119 (46.9 bits), Expect = 0.00049, P = 0.00049
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
F+P+ + + P +GTG IF+ NL D L F FG + + K+
Sbjct: 278 FSPITIDGMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 335
Query: 152 D-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 336 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHK 384
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 281 (104.0 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 61/169 (36%), Positives = 97/169 (57%)
Query: 13 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLG 72
S P+ + G S N T+L V L N+T + LF +G++ S ++ RD T +SLG
Sbjct: 72 SCPSPMQTGGS-NDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 130
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHK 132
YG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K
Sbjct: 131 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQK 188
Query: 133 ALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
L FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 189 ELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNG 237
Score = 219 (82.2 bits), Expect = 3.1e-23, Sum P(2) = 3.1e-23
Identities = 48/157 (30%), Positives = 90/157 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 149 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 202
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
S +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 203 SRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQK 239
Score = 132 (51.5 bits), Expect = 1.3e-32, Sum P(2) = 1.3e-32
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G + + V+RD K K FGFV N D+AA A+ +L
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 386
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 387 NGYRLGDRVLQVSFKTNKTHK 407
Score = 128 (50.1 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+ + LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 149 LNGLRLQTKTIKVSYAR 165
Score = 127 (49.8 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 36/115 (31%), Positives = 52/115 (45%)
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL 145
A V F+P+ S+ + P +GTG IF+ NL D L F FG +
Sbjct: 295 AYGVKRFSPITIDSMTSLVGMNIPG--HTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVN 352
Query: 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ K+ D + + KGFGFV N + A AI LNG + D+ + V K +
Sbjct: 353 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 407
Score = 124 (48.7 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+ + +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 89 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 148
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 149 LNGLRLQTKTIKVSYARPSS 168
Score = 122 (48.0 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 29/95 (30%), Positives = 55/95 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +G S+G GF+ F EA A+
Sbjct: 175 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKG 234
Query: 372 MNGKMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+NG+ ++P+ V A ++ + QA SQ+
Sbjct: 235 LNGQKPSGAAEPITVKFANNPSQKTS--QALLSQL 267
Score = 119 (46.9 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L +LF FG + + KV+RD + KG GFV + +EA+ A+
Sbjct: 324 GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 383
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 384 ASLNGYRLGDRVLQVSFKTNKTHK 407
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 266 (98.7 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 59/160 (36%), Positives = 94/160 (58%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD----LSTRR----SLGYGYVNYANP 81
T+L + L N++ +L LFS +G+V S ++ RD +S SLGYG+VNY NP
Sbjct: 56 TNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNP 115
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
+DA RA++ LN L +K+I++ Y+ PS N++I L K++ K + D F+ +
Sbjct: 116 SDAERAINTLNGLRLQSKTIKVSYAR--PSSDGIKDANLYISGLPKTMTQKNVEDMFTQY 173
Query: 142 GNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D SG S+G F++F+ + A+ AI LNG
Sbjct: 174 GRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNG 213
Score = 187 (70.9 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
Identities = 50/175 (28%), Positives = 90/175 (51%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD---GS------GQSKG 159
+PS K+ N+ I L +++ + L FSS G + S K+ D G G S G
Sbjct: 50 EPSDAKT---NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLG 106
Query: 160 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES 219
+GFV + N A+ AI+ LNG+ + K + V + + IK N+++ L ++
Sbjct: 107 YGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSD----GIKDA--NLYISGLPKT 160
Query: 220 TTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKK 273
T ++++ +F +YG I ++ ++ D G S+ F+ F+ +A +A++ LNG K
Sbjct: 161 MTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSK 215
Score = 143 (55.4 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 43/195 (22%), Positives = 94/195 (48%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+ + L ++ + E+L+ +F G + SA ++RD K G ++ + + +
Sbjct: 57 NLIINYLPQNMSQEELRSLFSSIGEVESAKLIRD-----KMAG-MSAHHTLGHSLGYGFV 110
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N D E + + + +K + + + D + NLYI L ++ + ++
Sbjct: 111 NYVNPSDAERAINTLNGLRLQSKTIKVSYA---RPSSDGIKDANLYISGLPKTMTQKNVE 167
Query: 330 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAV 386
++F+++G I + +++ D SG+S+G F+ F EA A+ ++NG S+P+ V
Sbjct: 168 DMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKF 227
Query: 387 AQR-KEERRARLQAQ 400
A + + ++L +Q
Sbjct: 228 AANPNQSKNSQLLSQ 242
Score = 133 (51.9 bits), Expect = 3.1e-32, Sum P(2) = 3.1e-32
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 348 NGYRLGDKVLQVSFKSSKSHK 368
Score = 131 (51.2 bits), Expect = 5.1e-32, Sum P(2) = 5.1e-32
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 285 GWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAI 344
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
+ +NG + K L V+ K +
Sbjct: 345 SSLNGYRLGDKVLQVSFKSSKSHK 368
Score = 126 (49.4 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 37/123 (30%), Positives = 61/123 (49%)
Query: 275 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
+DR+ + G + K E ++ +E M + + NL I L ++ E+L+ LFS
Sbjct: 21 NDRDSHKGASSIKQE-VYDMPNGYEDPMGDEPSDAK-TNLIINYLPQNMSQEELRSLFSS 78
Query: 335 FGTITSCKVMRDPS---------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385
G + S K++RD G S G GFV + P +A RA+ +NG + SK + V+
Sbjct: 79 IGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVS 138
Query: 386 VAQ 388
A+
Sbjct: 139 YAR 141
Score = 120 (47.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 27/68 (39%), Positives = 35/68 (51%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
IF+ NL + D L F FG + + K+ D + + KGFGFV N E A AI L
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSL 347
Query: 179 NGMLINDK 186
NG + DK
Sbjct: 348 NGYRLGDK 355
Score = 86 (35.3 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A S + +LY+ L +T + D+F+Q G++++ R+ D ++ S G ++ +
Sbjct: 140 ARPSSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFD 199
Query: 80 NPADAARALDVLN 92
++A A+ LN
Sbjct: 200 KRSEAEEAIKDLN 212
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 249 (92.7 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
Identities = 57/163 (34%), Positives = 91/163 (55%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD-----------LSTRRSLGYGYVNY 78
T+L V L N+T +L LFS +G+V S ++ RD LS SLGYG+VNY
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNY 79
Query: 79 ANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTF 138
N DA RA++ LN L +K+I++ ++ PS N++I L +++ K + D F
Sbjct: 80 LNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVEDMF 137
Query: 139 SSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
FG+I++ ++ D +G S+G F++F+ + A+ AI NG
Sbjct: 138 LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 181 (68.8 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
Identities = 51/181 (28%), Positives = 86/181 (47%)
Query: 107 HRDPSIRKS-GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD------------G 153
H D R G N+ + L +++ L FSS G + S K+ D
Sbjct: 8 HMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLS 67
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFV 213
G S G+GFV + N + A+ AI+ LNG+ + K + V F R E++ K N+++
Sbjct: 68 KGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVS-FARPSS-ESI----KDANLYI 121
Query: 214 KNLDESTTDEDLKKIFGEYG-TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 272
L + T +D++ +F +G I S V++ G S+ F+ F+ +A +A+ + NG
Sbjct: 122 SGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGH 181
Query: 273 K 273
K
Sbjct: 182 K 182
Score = 146 (56.5 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 49/193 (25%), Positives = 89/193 (46%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA---- 265
N+ V L ++ T ++L+ +F G + SA ++RD K GF ++ +
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD-----KVAGFEMRSSSLSKGHSLGYG 75
Query: 266 -VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324
V LN K D E + + + +K F + E++ + NLYI L ++
Sbjct: 76 FVNYLNAK---DAERAINTLNGLRLQSKTIKVSFARPSSESI---KDANLYISGLPRTMT 129
Query: 325 DEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIV--SKP 381
+ ++++F FG I + +V+ D + G+S+G F+ F EA A+A NG S+P
Sbjct: 130 QKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEP 189
Query: 382 LYVAVAQRKEERR 394
+ V A + +
Sbjct: 190 ITVKFAANPNQNK 202
Score = 134 (52.2 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NLG D+ L ++F FG +T+ KV+RD + KG GFV + EEA+ A+
Sbjct: 254 GWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 313
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + K L V+ K +
Sbjct: 314 ASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 132 (51.5 bits), Expect = 6.4e-32, Sum P(2) = 6.4e-32
Identities = 29/81 (35%), Positives = 45/81 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + + L ++FG +G +T+ V+RD K K FGFV N ++AA A+ +L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + D+ V KS +
Sbjct: 317 NGYRLGDKTLQVSFKTSKSHK 337
Score = 123 (48.4 bits), Expect = 0.00014, P = 0.00014
Identities = 35/110 (31%), Positives = 50/110 (45%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTGN--IFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
F+P+ + M S ++ S T IF+ NL + D L F FG + + K+
Sbjct: 231 FSPMG---VDHMSSISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVI 287
Query: 151 TD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
D + + KGFGFV N E A AI LNG + DK + V K +
Sbjct: 288 RDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 6 VQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDL 65
V H + +S N ++ SG ++V +L + + L+ +F G V +V+V RD
Sbjct: 236 VDHMSSISSVNVASSATSG-----WCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDF 290
Query: 66 STRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105
+T + G+G+V N +AA A+ LN L +K++++ +
Sbjct: 291 NTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 330
Score = 79 (32.9 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A S +LY+ L +T + D+F G +++ RV D +T S G ++ +
Sbjct: 107 ARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFD 166
Query: 80 NPADAARALDVLNF--TPLNNKSIRIMYSHRDPSIRKS 115
++A A+ N P +++ I + ++ +P+ K+
Sbjct: 167 KRSEAEEAIASFNGHKPPGSSEPITVKFA-ANPNQNKN 203
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 353 (129.3 bits), Expect = 7.3e-32, P = 7.3e-32
Identities = 67/121 (55%), Positives = 91/121 (75%)
Query: 222 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 281
DE LK +FG++G S VM D GKSK FGFV+FE +DA KAV+ +NGK+ + ++ YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 282 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 341
G+AQKK ER+ ELK +FEQ ++ + ++QG+NLY+KNL D IDDE+L++ FS FGTITS
Sbjct: 62 GRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Query: 342 K 342
K
Sbjct: 122 K 122
Score = 255 (94.8 bits), Expect = 4.6e-21, P = 4.6e-21
Identities = 57/118 (48%), Positives = 73/118 (61%)
Query: 134 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 193
L D F FG LS K+ TD SG+SKGFGFV FE E AQ A+D++NG +N KQ++VG
Sbjct: 5 LKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRA 64
Query: 194 LRKQERETVAIKTKFN-------------NVFVKNLDESTTDEDLKKIFGEYGTITSA 238
+K ER+T +K KF N++VKNLD+ DE L+K F +GTITSA
Sbjct: 65 QKKVERQT-ELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 121
Score = 207 (77.9 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 42/81 (51%), Positives = 56/81 (69%)
Query: 325 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
DE+LK+LF +FG S KVM D SG SKG GFV+F E+A +A+ EMNGK + K +YV
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYV 61
Query: 385 AVAQRKEERRARLQAQFSQMR 405
AQ+K ER+ L+ +F QM+
Sbjct: 62 GRAQKKVERQTELKRKFEQMK 82
Score = 147 (56.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 43/123 (34%), Positives = 61/123 (49%)
Query: 43 DSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102
D +L DLF + G LSV+V D S + S G+G+V++ DA +A+D +N LN K I
Sbjct: 2 DERLKDLFGKFGPALSVKVMTDESGK-SKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 60
Query: 103 IMYSHR-----------------DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145
+ + + D R G N+++KNLD ID + L FS FG I
Sbjct: 61 VGRAQKKVERQTELKRKFEQMKQDRITRYQGV-NLYVKNLDDGIDDERLRKEFSPFGTIT 119
Query: 146 SCK 148
S K
Sbjct: 120 SAK 122
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 270 (100.1 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 57/153 (37%), Positives = 91/153 (59%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-RSLGYGYVNYANPADAARAL 88
T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P DA +A+
Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI 125
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +
Sbjct: 126 NTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSR 183
Query: 149 IATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 184 ILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 216
Score = 226 (84.6 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
Identities = 63/225 (28%), Positives = 112/225 (49%)
Query: 57 LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-----KSIRIMYSHRDPS 111
++VR+C S RS + + AA + N NN +I +
Sbjct: 1 MAVRLCDVASLLRSGSWAAEPWTGQVIAAMETQLSNGPTCNNTANCPNTINCSSPVESNN 60
Query: 112 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG--SGQSKGFGFVQFENKE 169
S T N+ + L +++ + L F S G I SCK+ D GQS G+GFV + + +
Sbjct: 61 TEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPK 119
Query: 170 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
A+ AI+ LNG+ + K + V + + +I+ N++V L ++ T ++L+++F
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLF 173
Query: 230 GEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
+YG I TS +++ G S+ GF+ F+ +A +A++ LNG+K
Sbjct: 174 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 218
Score = 168 (64.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 50/188 (26%), Positives = 95/188 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+ V L ++ T E+LK +FG G I S ++RD + + G+ F N D A +A+
Sbjct: 67 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGY-GFVNYIDPKDAEKAI 125
Query: 270 NGKKFDDREWYVG-KAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
N G + Q K+ +K + + ++ + NLY+ L ++ ++L
Sbjct: 126 NTLN--------GLRLQTKT-----IKVSYARPSSASI---RDANLYVSGLPKTMTQKEL 169
Query: 329 KELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVA 385
++LFS++G I + +++ D +G+S+G GF+ F EA A+ +NG+ ++P+ V
Sbjct: 170 EQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 229
Query: 386 VAQRKEER 393
A ++
Sbjct: 230 FANNPSQK 237
Score = 133 (51.9 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 368 NGYRLGDRVLQVSFKTSKTHK 388
Score = 121 (47.7 bits), Expect = 2.2e-30, Sum P(2) = 2.2e-30
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 305 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 364
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 365 ASLNGYRLGDRVLQVSFKTSKTHK 388
Score = 117 (46.2 bits), Expect = 0.00082, P = 0.00082
Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 115 SGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQ 172
+GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 302 AGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAA 361
Query: 173 NAIDKLNGMLINDK 186
AI LNG + D+
Sbjct: 362 MAIASLNGYRLGDR 375
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 350 (128.3 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 69/111 (62%), Positives = 90/111 (81%)
Query: 293 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK 352
ELK +FEQ +E + ++QG+NLYIKNL D+IDDEKL++ FS FG+ITS KVM + G SK
Sbjct: 2 ELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSK 60
Query: 353 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403
G GFV FS+PEEA++A+ EMNG+++ SKPLYVA+AQRKEER+A L Q+ Q
Sbjct: 61 GFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 111
Score = 206 (77.6 bits), Expect = 9.3e-16, P = 9.3e-16
Identities = 42/91 (46%), Positives = 61/91 (67%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+++KNLD++ DE L+K F +G+ITSA VM + DG+SK FGFV F + ++A KAV +
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQ 300
NG+ + YV AQ+K ER+ L Q+ Q
Sbjct: 81 NGRIVGSKPLYVALAQRKEERKAHLTNQYMQ 111
Score = 183 (69.5 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 36/82 (43%), Positives = 54/82 (65%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
N++IKNLD +ID + L FS FG+I S K+ + G+SKGFGFV F + E A A+ ++
Sbjct: 22 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEM 80
Query: 179 NGMLINDKQVFVGHFLRKQERE 200
NG ++ K ++V RK+ER+
Sbjct: 81 NGRIVGSKPLYVALAQRKEERK 102
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 272 (100.8 bits), Expect = 6.7e-30, Sum P(2) = 6.7e-30
Identities = 66/212 (31%), Positives = 117/212 (55%)
Query: 97 NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ 156
NN + ++++ + + T N+F+K+L + + L + FS +G +LS K+ D G
Sbjct: 89 NNNNNNNSVNNKELELERDQT-NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGN 147
Query: 157 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF--NNVFVK 214
S G+GFV+F + + + AI++L+G +K++ R T + +K+ NN+F+K
Sbjct: 148 SYGYGFVRFSSPQESAAAIEELDGYQYQNKKLLC----RLSNLYT-NLNSKYPSNNLFIK 202
Query: 215 NLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF 274
L TD+ L+K+F +G I VM D +G+SK GFV F + DA+KA++A+NG +
Sbjct: 203 PLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRI 262
Query: 275 DDREWYVGKAQKKSEREQELKGQFEQAMKETV 306
+ Y K ++ EQ+ K +Q +T+
Sbjct: 263 NKDSGYP-LVVKYADTEQQ-KISRKQRKMQTI 292
Score = 268 (99.4 bits), Expect = 9.5e-20, P = 9.5e-20
Identities = 68/192 (35%), Positives = 104/192 (54%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
NVFVK+L DEDL+ +F +YG + S+ VM D G S +GFV F + ++A A+E L
Sbjct: 110 NVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEEL 169
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+G ++ +++ L + K+ NL+IK L + D++L+
Sbjct: 170 DGYQYQNKK---------------LLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLR 214
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK---PLYVAV 386
+LF FG I CKVM D +G SK +GFV FS+ +AS+A+ MNG I PL V
Sbjct: 215 KLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRINKDSGYPLVVKY 274
Query: 387 AQRKEERRARLQ 398
A ++++ +R Q
Sbjct: 275 ADTEQQKISRKQ 286
Score = 247 (92.0 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 56/156 (35%), Positives = 88/156 (56%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+++V L + D L +LFS+ G+VLS +V D S GYG+V +++P ++A A++
Sbjct: 109 TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMID-PKGNSYGYGFVRFSSPQESAAAIE 167
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIR-KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
L+ NK + S+ ++ K + N+FIK L + L F FG I+ CK
Sbjct: 168 ELDGYQYQNKKLLCRLSNLYTNLNSKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECK 227
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
+ D +GQSK GFV+F ++ A AID +NG+ IN
Sbjct: 228 VMLDHNGQSKFAGFVRFSSELDASKAIDAMNGVRIN 263
Score = 140 (54.3 bits), Expect = 6.7e-30, Sum P(2) = 6.7e-30
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL++ +L +DD L +LFS+FG + S +V+ D +G +KG GFV F +EA + E
Sbjct: 770 NLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKE 829
Query: 372 MNGKMIVSKPLYVAVAQRKE 391
MNG I SK L V + KE
Sbjct: 830 MNGFRIGSKFLKVKLKNEKE 849
Score = 124 (48.7 bits), Expect = 0.00046, P = 0.00046
Identities = 33/122 (27%), Positives = 63/122 (51%)
Query: 16 NGVAAGASGNQFLT-TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
+ + + + G + T+L+V L V DS L+ LFSQ G++ SVRV D T + GYG
Sbjct: 754 SSITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYG 813
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKAL 134
+V + +A + +N + +K +++ + S+ SG + +N +K+ + + L
Sbjct: 814 FVKFYQTDEALKCQKEMNGFRIGSKFLKVKLKNEKESMN-SGKSHHQHQNQNKNQNEQHL 872
Query: 135 HD 136
+
Sbjct: 873 EE 874
Score = 122 (48.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 37/119 (31%), Positives = 60/119 (50%)
Query: 92 NFTPLNN-KSIRIMYSHRDPSIRKSGTG------NIFIKNLDKSIDHKALHDTFSSFGNI 144
N T L N +S+ + + SG G N+F+ +L +D L FS FG +
Sbjct: 736 NTTNLTNLESLNPLSASSSSITSNSGGGKHTNDTNLFVFHLPPFVDDSYLFQLFSQFGKL 795
Query: 145 LSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
S ++ TD +G++KG+GFV+F + A ++NG I K F+ L K E+E++
Sbjct: 796 QSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEMNGFRIGSK--FLKVKL-KNEKESM 851
Score = 119 (46.9 bits), Expect = 6.7e-25, Sum P(2) = 6.7e-25
Identities = 39/132 (29%), Positives = 67/132 (50%)
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAK 264
T N+FV +L D L ++F ++G + S V+ D D G++K +GFV F D+A K
Sbjct: 766 TNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALK 825
Query: 265 AVEALNGKKFDDREWYVG-KAQKKS--------EREQELKGQFEQAMKETVDKFQGLNLY 315
+ +NG + + V K +K+S + + + K Q EQ ++E ++ Q NL
Sbjct: 826 CQKEMNGFRIGSKFLKVKLKNEKESMNSGKSHHQHQNQNKNQNEQHLEEEEEE-QTFNLP 884
Query: 316 IKNL-GDSIDDE 326
N+ G+ + E
Sbjct: 885 ENNIDGNESNQE 896
Score = 109 (43.4 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 21/76 (27%), Positives = 45/76 (59%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84
+++ + +L++ L ++VTD QL LF G+++ +V D + + G+V +++ DA
Sbjct: 192 SKYPSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFA-GFVRFSSELDA 250
Query: 85 ARALDVLNFTPLNNKS 100
++A+D +N +N S
Sbjct: 251 SKAIDAMNGVRINKDS 266
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 262 (97.3 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 63/175 (36%), Positives = 96/175 (54%)
Query: 9 QAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR 68
Q S PN V G S T+L + L +T ++ LF+ +G++ S ++ RD T
Sbjct: 27 QRYCSAPN-VDIGES-----KTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTG 80
Query: 69 RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKS 128
+SLGYG+VNY DA RA+ N L NK+I++ Y+ PS + N+++ + KS
Sbjct: 81 QSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYAR--PSNDQIKGSNLYVSGIPKS 138
Query: 129 IDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGML 182
+ L F FG I++ +I +D +G SKG GFV+F+ K+ A AI LNG +
Sbjct: 139 MTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 216 (81.1 bits), Expect = 6.1e-24, Sum P(2) = 6.1e-24
Identities = 52/162 (32%), Positives = 89/162 (54%)
Query: 112 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKES 170
I +S T N+ I L + + + + F+S G I SCK+ D +GQS G+GFV + +E
Sbjct: 37 IGESKT-NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREED 95
Query: 171 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 230
A A+ NG+ + +K + V + + + + K +N++V + +S T +L+ IF
Sbjct: 96 ALRAVSSFNGLRLQNKTIKVSY--ARPSNDQI----KGSNLYVSGIPKSMTLHELESIFR 149
Query: 231 EYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNG 271
+G I ++ ++ D G SK GFV F+ D+A A++ LNG
Sbjct: 150 PFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNG 191
Score = 141 (54.7 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 44/168 (26%), Positives = 82/168 (48%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+ + L + T E+++ +F G I S ++RD + G+ F N A+ A+
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRD-KVTGQSLGY-GFVNYVREEDALRAV 100
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+ F+ + Q K+ +K + + D+ +G NLY+ + S+ +L+
Sbjct: 101 SS--FNGL-----RLQNKT-----IKVSYARPSN---DQIKGSNLYVSGIPKSMTLHELE 145
Query: 330 ELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKM 376
+F FG I + +++ D +G+SKG GFV F +EA A+ +NG +
Sbjct: 146 SIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSI 193
Score = 132 (51.5 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
Identities = 29/74 (39%), Positives = 41/74 (55%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G L++ NL DD L +LFS+FG I + K++RD + KG FV+ S EA A+
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAML 432
Query: 371 EMNGKMIVSKPLYV 384
+NG + K L V
Sbjct: 433 SLNGTNLAGKTLQV 446
Score = 131 (51.2 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 33/102 (32%), Positives = 59/102 (57%)
Query: 10 AQMSGPNG-VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR 68
AQ+S + VAA + L+V +L + D+ L+ LFSQ G +++V++ RDL T+
Sbjct: 353 AQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDL-TQ 411
Query: 69 RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP 110
+ GY +V+ +N +A A+ LN T L K++++++ P
Sbjct: 412 QCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSSTP 453
Score = 129 (50.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 29/82 (35%), Positives = 48/82 (58%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL I L + E+++ LF+ G I SCK++RD +G S G GFV + E+A RA++
Sbjct: 43 NLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSS 102
Query: 372 MNGKMIVSKPLYVAVAQRKEER 393
NG + +K + V+ A+ ++
Sbjct: 103 FNGLRLQNKTIKVSYARPSNDQ 124
Score = 99 (39.9 bits), Expect = 6.0e-26, Sum P(2) = 6.0e-26
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+FV NL T D L ++F ++G I + ++RD + K + FV+ N +A A+ +LN
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 271 G 271
G
Sbjct: 436 G 436
Score = 38 (18.4 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 564 MEVLRSVAQQQANNPADQLASLSL 587
M + +V+Q A PAD L + +L
Sbjct: 267 MGAITAVSQPTATLPADYLTTSAL 290
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 214 (80.4 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 43/113 (38%), Positives = 69/113 (61%)
Query: 69 RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKS 128
+SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K+
Sbjct: 118 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKT 175
Query: 129 IDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
+ K L FS +G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 176 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Score = 172 (65.6 bits), Expect = 4.6e-21, Sum P(3) = 4.6e-21
Identities = 40/131 (30%), Positives = 76/131 (58%)
Query: 145 LSCKIATDGSG-QSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 203
L ++ G G QS G+GFV + + + A+ AI+ LNG+ + K + V + + +
Sbjct: 106 LDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY----ARPSSAS 161
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-TSAVVMRDGDGKSKCFGFVNFENADDA 262
I+ N++V L ++ T ++L+++F +YG I TS +++ G S+ GF+ F+ +A
Sbjct: 162 IRDA--NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEA 219
Query: 263 AKAVEALNGKK 273
+A++ LNG+K
Sbjct: 220 EEAIKGLNGQK 230
Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 58/212 (27%), Positives = 98/212 (46%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD---GDGKSKCFGFVN-FENADDAAKA 265
N+ V L ++ T E+LK +FG G I S ++RD G+ + F + FE
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLFEKWRPLDSE 109
Query: 266 VEALNGKKFDDREW-YVGKAQKKSERE--QELKGQFEQAMKETVD-------KFQGLNLY 315
V L GK + + +V K + L G Q V + NLY
Sbjct: 110 VIVL-GKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLY 168
Query: 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNG 374
+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+ +NG
Sbjct: 169 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 228
Query: 375 KMI--VSKPLYVAVAQRKEERRARLQAQFSQM 404
+ ++P+ V A ++ QA SQ+
Sbjct: 229 QKPPGATEPITVKFANNPSQKTN--QAILSQL 258
Score = 133 (51.9 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 30/81 (37%), Positives = 44/81 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL + L ++FG +G +T+ V+RD K K FGFV N D+AA A+ +L
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 270 NGKKFDDREWYVGKAQKKSER 290
NG + DR V K+ +
Sbjct: 379 NGYRLGDRVLQVSFKTNKTHK 399
Score = 122 (48.0 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL D+ L ++F FG +T+ KV+RD + KG GFV + +EA+ A+
Sbjct: 316 GWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAI 375
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
A +NG + + L V+ K +
Sbjct: 376 ASLNGYRLGDRVLQVSFKTNKTHK 399
Score = 117 (46.2 bits), Expect = 5.0e-09, Sum P(2) = 5.0e-09
Identities = 30/86 (34%), Positives = 41/86 (47%)
Query: 116 GTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQN 173
GTG IF+ NL D L F FG + + K+ D + + KGFGFV N + A
Sbjct: 314 GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAM 373
Query: 174 AIDKLNGMLINDKQVFVGHFLRKQER 199
AI LNG + D+ + V K +
Sbjct: 374 AIASLNGYRLGDRVLQVSFKTNKTHK 399
Score = 94 (38.1 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYV L +T +L LFSQ G++++ R+ D T S G G++ + +A A+
Sbjct: 166 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 225
Query: 91 LN 92
LN
Sbjct: 226 LN 227
Score = 67 (28.6 bits), Expect = 2.6e-27, Sum P(3) = 2.6e-27
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST 67
SGN + T+L V L N+T +L LF +G++ S ++ RD T
Sbjct: 41 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 86
Score = 58 (25.5 bits), Expect = 3.9e-20, Sum P(3) = 3.9e-20
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 152
N+ + L +++ + L F S G I SCK+ D
Sbjct: 50 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 83
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 296 (109.3 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 67/180 (37%), Positives = 106/180 (58%)
Query: 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
A NQ T +YVG LD +++ L++LF Q G V++V V +D T YG++ Y +
Sbjct: 19 AERNQDAT--VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSE 76
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA A+ VLN L+ K IR+ + +D G N+FI NLD +D K L+DTFS+F
Sbjct: 77 EDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAF 135
Query: 142 GNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
G I S KI D +G S+GFGF+ +++ E++ AI+ + G ++++Q+ V + +K +
Sbjct: 136 GVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTK 195
Score = 197 (74.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 55/189 (29%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LD ++E L ++F + G + + V +D + +GF+ + + +DA A++ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA + K+++D G NL+I NL +D++ L
Sbjct: 87 NMIKLHGKPIRVNKASQD---------------KKSLDV--GANLFIGNLDPDVDEKLLY 129
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I S K+MRDP +G S+G GF+++ + E + A+ M G+ + ++ + V+ A
Sbjct: 130 DTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 190 YKKDTKGER 198
Score = 188 (71.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 45/183 (24%), Positives = 96/183 (52%)
Query: 111 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKE 169
S ++ +++ LD + + L + F G +++ + D + + +GF+++ ++E
Sbjct: 18 SAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEE 77
Query: 170 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
A AI LN + ++ K + V Q+++++ + N+F+ NLD ++ L F
Sbjct: 78 DADYAIKVLNMIKLHGKPIRVNK--ASQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTF 132
Query: 230 GEYGTITS-AVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287
+G I S +MRD D G S+ FGF+++++ + + A+E++ G+ +R+ V A KK
Sbjct: 133 SAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
Query: 288 SER 290
+
Sbjct: 193 DTK 195
Score = 38 (18.4 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 464 PFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 495
P GSM PVP+ P V Q P
Sbjct: 238 PRPFANGSMQPVPIPAPRQPPPPPPQVYQTQP 269
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 253 (94.1 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 63/191 (32%), Positives = 103/191 (53%)
Query: 5 QVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD 64
Q Q + +G G++G+ T+L V L +T+ ++ LFS VG++ SV++ RD
Sbjct: 124 QAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRD 183
Query: 65 LST-------------RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS 111
S +SLGYG+VNY P DA +A++VLN L NK+I++ ++ PS
Sbjct: 184 KSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PS 241
Query: 112 IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG--QSKGFGFVQFENKE 169
N+++ L K++ + L F+ FG I++ +I + Q+KG GF++F+ +E
Sbjct: 242 SDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKRE 301
Query: 170 SAQNAIDKLNG 180
A AI LNG
Sbjct: 302 EATRAIIALNG 312
Score = 191 (72.3 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 53/169 (31%), Positives = 88/169 (52%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS--------------GQSKGFGFVQ 164
N+ + L +++ + FSS G I S K+ D S GQS G+GFV
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVN 209
Query: 165 FENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDED 224
+ + A+ A++ LNG+ + +K + V F R AIK N++V L ++ T ++
Sbjct: 210 YVRPQDAEQAVNVLNGLRLQNKTIKVS-FARPSSD---AIKGA--NLYVSGLPKTMTQQE 263
Query: 225 LKKIFGEYGTI-TSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNG 271
L+ IF +G I TS ++ G D ++K GF+ F+ ++A +A+ ALNG
Sbjct: 264 LEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 152 (58.6 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 43/171 (25%), Positives = 86/171 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA- 268
N+ V L ++ T+++++ +F G I S ++RD KS+ + ++ N +K
Sbjct: 150 NLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRD---KSQVY--IDPLNPQAPSKGQSLG 204
Query: 269 ---LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
+N + D E V + + +K F + + D +G NLY+ L ++
Sbjct: 205 YGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFA---RPSSDAIKGANLYVSGLPKTMTQ 261
Query: 326 EKLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRALAEMNG 374
++L+ +F+ FG I + +++++ + KG GF+ F EEA+RA+ +NG
Sbjct: 262 QELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 118 (46.6 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 269
+F+ NL T + L ++FG +G + S +++D + K +GFV+ N D+AA A+ AL
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 270 NGKKFDDREWYVGKAQKKSE 289
NG +R V K++
Sbjct: 464 NGYTMGNRVLQVSFKTNKAK 483
Score = 117 (46.2 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEM 372
++I NL ++ L +LF FG + S K+++DP+ KG GFV+ + +EA+ A+ +
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 373 NGKMIVSKPLYVAVAQRK 390
NG + ++ L V+ K
Sbjct: 464 NGYTMGNRVLQVSFKTNK 481
Score = 112 (44.5 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 30/76 (39%), Positives = 38/76 (50%)
Query: 115 SGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKES 170
SG G IFI NL + AL F FG + S KI D + Q KG+GFV N +
Sbjct: 396 SGPGGAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDE 455
Query: 171 AQNAIDKLNGMLINDK 186
A AI LNG + ++
Sbjct: 456 AAMAIRALNGYTMGNR 471
Score = 80 (33.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/98 (24%), Positives = 47/98 (47%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-RRSLGYGYVNY 78
A S + +LYV L +T +L +F+ G +++ R+ ++ ++ G G++ +
Sbjct: 238 ARPSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRF 297
Query: 79 ANPADAARALDVLN-FTPLN-NKSIRIMYSHRDPSIRK 114
+A RA+ LN TP + I + +S+ S K
Sbjct: 298 DKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSK 335
Score = 48 (22.0 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
Identities = 20/73 (27%), Positives = 29/73 (39%)
Query: 449 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASP 508
G A P+ + + F M AG ML V + G G A+ P A + N +P
Sbjct: 354 GGAMHTPVNKGLARFS-PM-AGDMLDVMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAP 411
Query: 509 EQQRTLLGESLYP 521
E + L + P
Sbjct: 412 ETEEAALWQLFGP 424
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 264 (98.0 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 66/200 (33%), Positives = 102/200 (51%)
Query: 205 KTKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
K K N + ++NL D++LK+IF ++GT+ + DGK K F FV F+ +A
Sbjct: 119 KKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAE 178
Query: 264 KAVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN------ 313
KA A+N K DR +W + + E + E+ + +KF+G+
Sbjct: 179 KARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETT--STEKFKGIRKIKLKS 236
Query: 314 -LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372
L I+NL +++ LK++FSEFGT+ K+ P G +G FV F EA +AL M
Sbjct: 237 RLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAM 296
Query: 373 NGKMIVSKPLYV--AVAQRK 390
NGK I + + V A+A+ K
Sbjct: 297 NGKKIKDRQVAVDWAIAKDK 316
Score = 198 (74.8 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 65/264 (24%), Positives = 116/264 (43%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+ I+NL + L FS FG +L KI G+ +GF FV F+ A A+ +N
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMN 297
Query: 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNL----DESTTDEDLKK-IFGEYGT 234
G I D+QV V + K + + N+ +N+ +E+ ++D KK +
Sbjct: 298 GKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKKSISKKSD 357
Query: 235 ITSAVVMRDGDGKSKCFGFVNFEN----ADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290
+ D D S + EN +DD + + DD + +
Sbjct: 358 SSEDEDDDDDDDDSSGSEMDDAENESQQSDDEDDDDDDDDDDDDDDND---DDDDDDDDD 414
Query: 291 EQELKGQFEQAMKETV---DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
+ + +G+ K D +G ++I+NL ++E L+E+ +FG ++ +V+ +P
Sbjct: 415 DDDSEGKTPSKKKRNPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNP 474
Query: 348 -SGISKGSGFVAFSTPEEASRALA 370
+G+SKG F F + E A + +A
Sbjct: 475 DTGVSKGCAFAQFKSKEAAEKCIA 498
Score = 162 (62.1 bits), Expect = 8.8e-19, Sum P(3) = 8.8e-19
Identities = 43/136 (31%), Positives = 71/136 (52%)
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
IK K + + ++NL ++DLK+IF E+GT+ A + DGK + F FV F+ +A
Sbjct: 232 IKLK-SRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAG 290
Query: 264 KAVEALNGKKFDDRE----WYVGK-----AQKKSE----REQELKGQFEQAMKETVDKFQ 310
KA+ A+NGKK DR+ W + K Q S +E+ + G+ E+A + K +
Sbjct: 291 KALTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVEEADENKDAKKK 350
Query: 311 GLNLYIKNLGDSIDDE 326
++ + D DD+
Sbjct: 351 SISKKSDSSEDEDDDD 366
Score = 134 (52.2 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 28/85 (32%), Positives = 52/85 (61%)
Query: 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 371
+ L+++ L ++ +E L E+FSE G + +C V+ D +G G+V FS ++A RAL E
Sbjct: 4 VTLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKE 63
Query: 372 MNGKMIVSKPLYVAVAQRKEERRAR 396
+ K+ + ++V VA++K + + R
Sbjct: 64 V--KLYDDQKIFVTVAKKKLDDKKR 86
Score = 133 (51.9 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/85 (34%), Positives = 53/85 (62%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+FV+ L E+ ++E L +IF E G + + V+ D + K + FG+V F DDA +A++ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEV- 64
Query: 271 GKKFDDREWYVGKAQKKSEREQELK 295
K +DD++ +V A+KK + ++ K
Sbjct: 65 -KLYDDQKIFVTVAKKKLDDKKRKK 88
Score = 118 (46.6 bits), Expect = 8.8e-19, Sum P(3) = 8.8e-19
Identities = 32/98 (32%), Positives = 45/98 (45%)
Query: 94 TPLNNKSIRIMYSHRDPS-IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 152
T + KS + PS +K G + I+NL + L FS FG +L +I
Sbjct: 99 TEESQKSGETKNTEEIPSPTKKKENGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLK 158
Query: 153 GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
G+ KGF FVQF+ A+ A +N I D+ V V
Sbjct: 159 PDGKKKGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEV 196
Score = 110 (43.8 bits), Expect = 6.3e-26, Sum P(2) = 6.3e-26
Identities = 29/107 (27%), Positives = 56/107 (52%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+F++ L ++ ++ L + FS G + +C + D + +GFG+V F ++ AQ A+ ++
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEKKCRGFGYVTFSMEDDAQRALKEVK 65
Query: 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 226
L +D+++FV +K + + K K N N D T+E K
Sbjct: 66 --LYDDQKIFVTVAKKKLDDK----KRKKNAK--TNKDSGDTEESQK 104
Score = 85 (35.0 bits), Expect = 8.4e-14, Sum P(4) = 8.4e-14
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGFVNFENADDAAKAVEA- 268
+F++NL + +E L+++ ++G ++ VVM G SK F F++ + A K + A
Sbjct: 441 IFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIAAA 500
Query: 269 LNGKKF 274
L+ K+F
Sbjct: 501 LDEKEF 506
Score = 79 (32.9 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 22/107 (20%), Positives = 51/107 (47%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
L + L + +L F + L +FS+ G VL ++ ++ G+ +V + +A +A
Sbjct: 234 LKSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKR-GFAFVLFKRMPEAGKA 292
Query: 88 LDVLNFTPLNNKSIRIMYS-HRDPSIRK---SGTGNIFIKNLDKSID 130
L +N + ++ + + ++ +D + S GNI +N+ ++
Sbjct: 293 LTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVTGKVE 339
Score = 76 (31.8 bits), Expect = 8.8e-19, Sum P(3) = 8.8e-19
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+L+V L ++ L ++FS++G + + V D ++ G+GYV ++ DA RAL
Sbjct: 5 TLFVRRLPETASNEHLAEIFSEIGPLKNCFVVCD-KEKKCRGFGYVTFSMEDDAQRAL 61
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(3) = 1.3e-05
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L + +L F D +L +FS+ G VL R+ ++ G+ +V + ++A +A +
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKK-GFAFVQFKCVSEAEKARAAM 184
Query: 92 NFTPLNNKSIRI 103
N + ++ + +
Sbjct: 185 NRKAIRDRPVEV 196
Score = 72 (30.4 bits), Expect = 8.4e-14, Sum P(4) = 8.4e-14
Identities = 34/107 (31%), Positives = 45/107 (42%)
Query: 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKEL-FSEFG----TITSC 341
K R +ELK + + V K + L + NL S+D KL L S G I C
Sbjct: 569 KRTRFEELKRARLKDINVYVSKTR---LCVHNLPKSVDKNKLFNLCVSAAGGKGVRIIEC 625
Query: 342 KVMRDPS-------GISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381
++M D G S G GFV F E A +AL +N + P
Sbjct: 626 RIMYDKKPVKGQVMGQSLGYGFVEFQEHEHAIQALRHLNNNPDIFGP 672
Score = 49 (22.3 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 246 GKSKCFGFVNFENADDAAKAVEALN 270
G+S +GFV F+ + A +A+ LN
Sbjct: 640 GQSLGYGFVEFQEHEHAIQALRHLN 664
Score = 37 (18.1 bits), Expect = 8.1e-06, Sum P(3) = 8.1e-06
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 264 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM-KETVDKFQG 311
KA+ N KK + ++QK +E+ Q+LKG+ + + K V+ +G
Sbjct: 691 KAIRLENSKKGLKHD----RSQK-AEQPQQLKGKTKGLLQKGNVNASKG 734
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 238 (88.8 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 54/157 (34%), Positives = 86/157 (54%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+L V L ++ ++ LF G+V S ++ RD T +SLGYG+VNY DA +A++
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 169
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L NK+I++ + PS N+++ L K++ L FS +G I++ +I
Sbjct: 170 ALNGLRLQNKTIKVSIAR--PSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRI 227
Query: 150 ATDG------SGQSKGFGFVQFENKESAQNAIDKLNG 180
D +G SKG GF++F+ + A AI +LNG
Sbjct: 228 LCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 164 (62.8 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 57/203 (28%), Positives = 97/203 (47%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ + ++++ +F +G + S ++RD G+S +GFVN+ +DA KA+ A
Sbjct: 111 NLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAINA 170
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LNG + ++ V A+ SE +KG GL KN+ S D E L
Sbjct: 171 LNGLRLQNKTIKVSIARPSSE---SIKGANLYV--------SGLP---KNMTQS-DLESL 215
Query: 329 KELFSEFGT--ITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVS--KPLY 383
+ + T I + + +G+SKG GF+ F EA RA+ E+NG + +P+
Sbjct: 216 FSPYGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNGTTPKNSTEPIT 275
Query: 384 VAVAQRKEERRARLQAQFSQMRP 406
V A + +Q + + P
Sbjct: 276 VKFANNPSSNKNSMQPLAAYIAP 298
Score = 121 (47.7 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL T + L ++FG +G + S V+RD K K FGFV N ++A A+++L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422
Query: 270 NGKKFDDREWYVG-KAQKKSE 289
NG +R V K K +
Sbjct: 423 NGYTLGNRVLQVSFKTNKNKQ 443
Score = 118 (46.6 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL ++ L +LF FG + S KV+RD S KG GFV + EEA A+
Sbjct: 360 GWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAI 419
Query: 370 AEMNGKMIVSKPLYVAVAQRKEER 393
+NG + ++ L V+ K ++
Sbjct: 420 QSLNGYTLGNRVLQVSFKTNKNKQ 443
Score = 102 (41.0 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 31/103 (30%), Positives = 54/103 (52%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV-CRDLSTRR----SLGYG 74
A S +LYV L N+T S L LFS G++++ R+ C +++ S G G
Sbjct: 186 ARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGVG 245
Query: 75 YVNYANPADAARALDVLN-FTPLNN-KSIRIMYSHRDPSIRKS 115
++ + +A RA+ LN TP N+ + I + +++ +PS K+
Sbjct: 246 FIRFDQRFEADRAIKELNGTTPKNSTEPITVKFAN-NPSSNKN 287
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 222 (83.2 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 46/117 (39%), Positives = 69/117 (58%)
Query: 65 LSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKN 124
L +SLGYG+VNY DA +A++ LN L NK I++ Y+ PS N+++
Sbjct: 79 LQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYAR--PSSESIKGANLYVSG 136
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
L K++ L F+SFG I++ +I D SG SKG GF++F+ + A+ AI +LNG
Sbjct: 137 LPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNG 193
Score = 177 (67.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 38/119 (31%), Positives = 70/119 (58%)
Query: 155 GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVK 214
GQS G+GFV + E A+ A++ LNG+ + +K + V + + E++ K N++V
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSY--ARPSSESI----KGANLYVS 135
Query: 215 NLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGK 272
L ++ + DL+ +F +G I ++ ++ D G SK GF+ F+ ++A +A++ LNGK
Sbjct: 136 GLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 166 (63.5 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 45/172 (26%), Positives = 85/172 (49%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
N+ V L ++ T E+++ +F G + S ++RD + + + A + ++L
Sbjct: 27 NLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLP-ASLTALNPALQQGQSL 85
Query: 270 -----NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324
N + +D E V + + +K + + E++ +G NLY+ L ++
Sbjct: 86 GYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESI---KGANLYVSGLPKNLS 142
Query: 325 DEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK 375
L+ +F+ FG I + +++ D SG+SKG GF+ F EA RA+ E+NGK
Sbjct: 143 QPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 123 (48.4 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEAL 269
+FV NL T + L ++FG +G + S V+RD K K FGFV N D+A A+++L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334
Query: 270 NGKKFDDREWYVGKAQKKSE 289
NG +R V K++
Sbjct: 335 NGYTLGNRVLQVSFKTNKTK 354
Score = 109 (43.4 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRAL 369
G +++ NL ++ L +LF FG + S KV+RD + KG GFV + +EA A+
Sbjct: 272 GWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAI 331
Query: 370 AEMNGKMIVSKPLYVAVAQRK 390
+NG + ++ L V+ K
Sbjct: 332 QSLNGYTLGNRVLQVSFKTNK 352
Score = 108 (43.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 110 PSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 167
P +G+G IF+ NL + L F FG + S K+ D + + KGFGFV N
Sbjct: 264 PGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTN 323
Query: 168 KESAQNAIDKLNGMLINDK 186
+ A AI LNG + ++
Sbjct: 324 YDEAVVAIQSLNGYTLGNR 342
Score = 99 (39.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 40/155 (25%), Positives = 66/155 (42%)
Query: 16 NGVAAGA--SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
NG A G+ N T+L V L +T ++ LFS +G++ S ++ RD + +
Sbjct: 10 NGSANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLP 69
Query: 74 GYVNYANPA------------DAARALDVLN-FTPLNNKSIR---IMYSHRDPSIRKSGT 117
+ NPA + RA D LN ++ I S+ PS
Sbjct: 70 ASLTALNPALQQGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKG 129
Query: 118 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 152
N+++ L K++ L F+SFG I++ +I D
Sbjct: 130 ANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCD 164
Score = 85 (35.0 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A S +LYV L N++ L +F+ G++++ R+ D + S G G++ +
Sbjct: 120 ARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFD 179
Query: 80 NPADAARALDVLN 92
+A RA+ LN
Sbjct: 180 QRNEAERAIQELN 192
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 282 (104.3 bits), Expect = 5.2e-24, P = 5.2e-24
Identities = 60/167 (35%), Positives = 99/167 (59%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++Y+G+LD V+DS +++L Q G++++V + +D T+ GYG+V + + DA A +
Sbjct: 14 TVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRI 73
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KI 149
+N L K IR+ + D +F+ NLD + + L+DTFS FGN+++ K+
Sbjct: 74 MNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKV 133
Query: 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196
A D S SKG+GFV F + ES+ AI +NG + +KQV V + +K
Sbjct: 134 ARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKK 180
Score = 205 (77.2 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 57/196 (29%), Positives = 100/196 (51%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 269
V++ NLDE +D + ++ + G I + + +D +S + +GFV F + +DA A +
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
NG + + V KA ++ E+ G L++ NL + ++ L
Sbjct: 75 NGIRLYGKPIRVNKASADKQKSVEI----------------GAELFVGNLDPMVTEQVLY 118
Query: 330 ELFSEFGTITSC-KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+ FS FG + + KV RD S +SKG GFV+F+ E + A+A MNG+ +++K + V A
Sbjct: 119 DTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAY 178
Query: 389 RKEERRARLQAQFSQM 404
+K+ + R Q +M
Sbjct: 179 KKDGKGERHGDQAERM 194
Score = 184 (69.8 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 50/185 (27%), Positives = 95/185 (51%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKL 178
++I NLD+ + + + G I++ + D QS +G+GFV+F ++E A+ A +
Sbjct: 15 VYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASRIM 74
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 238
NG+ + K + V ++++V I + +FV NLD T++ L F +G + +
Sbjct: 75 NGIRLYGKPIRVNK-ASADKQKSVEIGAE---LFVGNLDPMVTEQVLYDTFSRFGNLVNL 130
Query: 239 V-VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V RD SK +GFV+F + + + A+ +NG+ +++ V A KK + + Q
Sbjct: 131 PKVARDDSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKDGKGERHGDQ 190
Query: 298 FEQAM 302
E+ +
Sbjct: 191 AERML 195
Score = 128 (50.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 30/94 (31%), Positives = 55/94 (58%)
Query: 16 NGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSV-RVCRDLSTRRSLGYG 74
N +A + + L+VG+LD VT+ LYD FS+ G ++++ +V RD + S GYG
Sbjct: 87 NKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRFGNLVNLPKVARD-DSNLSKGYG 145
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108
+V++A+ + A+ +N L NK + + Y+++
Sbjct: 146 FVSFADFESSDAAIANMNGQYLMNKQVSVQYAYK 179
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 281 (104.0 bits), Expect = 6.7e-24, P = 6.7e-24
Identities = 65/171 (38%), Positives = 99/171 (57%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L + DLD VT+S L +LF Q V+ V + +D T++ G YV + + +DA AL V+
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNIL-SCKI 149
F L NK I+I ++D K G N+FI NLD +D + LHDTFS FG I+ + K+
Sbjct: 75 KFVRLFNKEIKIKKENKD----KVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKV 130
Query: 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 200
D +G SKGF F+ F++ E++ AI+ +N + +K + V + +K E
Sbjct: 131 MRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNE 181
Score = 177 (67.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/175 (26%), Positives = 90/175 (51%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 178
+ I++LD + L + F ++ I D + Q G +V+F++ A+ A+ +
Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVM 74
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT-S 237
+ + +K++ + +K+ ++ V I N+F+ NLD + L F +GTI +
Sbjct: 75 KFVRLFNKEIKI----KKENKDKVDIGA---NLFIGNLDADVDERILHDTFSRFGTIIFT 127
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 292
VMRD +G SK F F+NF++ + + A+EA+N + ++ V A+KK E+
Sbjct: 128 PKVMRDENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSNER 182
Score = 175 (66.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 303 KETVDKFQ-GLNLYIKNLGDSIDDEKLKELFSEFGTIT-SCKVMRDPSGISKGSGFVAFS 360
KE DK G NL+I NL +D+ L + FS FGTI + KVMRD +G+SKG F+ F
Sbjct: 88 KENKDKVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFD 147
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391
+ E + A+ MN + + +KP+ V A++K+
Sbjct: 148 SFEASDAAIEAMNSQFLCNKPISVTYARKKD 178
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 60/160 (37%), Positives = 95/160 (59%)
Query: 23 SGN-QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP 81
SGN + T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSF 141
DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQY 148
Query: 142 GNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNG 180
G I++ +I D +G S+G GF++F+ + A+ AI LNG
Sbjct: 149 GRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 216 (81.1 bits), Expect = 7.7e-17, P = 7.7e-17
Identities = 48/156 (30%), Positives = 90/156 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+ + L +++ + L F S G I SCK+ D +GQS G+GFV + + + A+ AI+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTI-T 236
LNG+ + K + V + + +I+ N++V L ++ T ++L+++F +YG I T
Sbjct: 100 LNGLRLQTKTIKVSY----ARPSSASIRDA--NLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 272
S +++ G S+ GF+ F+ +A +A++ LNG+
Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 135 (52.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NL + L ++ E+LK LF G I SCK++RD +G S G GFV + P++A +A+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K + V+ A+
Sbjct: 100 LNGLRLQTKTIKVSYAR 116
Score = 131 (51.2 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+ V L ++ T E+LK +FG G I S ++RD G+S +GFVN+ + DA KA+
Sbjct: 40 NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 269 LNGKKFDDREWYVGKAQKKS 288
LNG + + V A+ S
Sbjct: 100 LNGLRLQTKTIKVSYARPSS 119
Score = 120 (47.3 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 23/64 (35%), Positives = 42/64 (65%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAE 371
NLY+ L ++ ++L++LFS++G I + +++ D +GIS+G GF+ F EA A+
Sbjct: 126 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKG 185
Query: 372 MNGK 375
+NG+
Sbjct: 186 LNGQ 189
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 279 (103.3 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 54/168 (32%), Positives = 99/168 (58%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++Y+G+LD VTDS L++L Q G V+++ + RD G+G+ + + D A +
Sbjct: 12 TIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQI 71
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KI 149
LN L K IR+ + +D + N+F+ NLD +D + L+DTFS+ G ++ ++
Sbjct: 72 LNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQV 131
Query: 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197
A D +G+SKG+GFV +++ E+A AI+ +N + +K + V + +++
Sbjct: 132 ARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKRE 179
Score = 188 (71.2 bits), Expect = 6.5e-12, P = 6.5e-12
Identities = 56/188 (29%), Positives = 93/188 (49%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 269
+++ NLDE TD L ++ + G + + + RD S FGF F + D A + L
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K GK + + Q+ +G V+ G NL++ NL +D+ L
Sbjct: 73 NQVKL------FGKPIRVNRASQD-RG---------VNTLIGANLFVGNLDPLVDERVLY 116
Query: 330 ELFSEFGTITSC-KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
+ FS G + +V RD +G SKG GFV++ + E A A+ MN + +++KP+ V+ A
Sbjct: 117 DTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAF 176
Query: 389 RKEERRAR 396
++E + R
Sbjct: 177 KREGKGER 184
Score = 170 (64.9 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 54/192 (28%), Positives = 93/192 (48%)
Query: 111 SIR--KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFEN 167
SIR ++ I++ NLD+ + L + G +++ I D S GFGF +F +
Sbjct: 2 SIREDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLH 61
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNLDESTTDEDLK 226
++ + A LN + + K + V Q+R + T N+FV NLD + L
Sbjct: 62 EQDVEYACQILNQVKLFGKPIRVNR--ASQDR---GVNTLIGANLFVGNLDPLVDERVLY 116
Query: 227 KIFGEYGTITSAV-VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW---YVG 282
F G + A V RD +G+SK +GFV++++ + A A+EA+N + ++ Y
Sbjct: 117 DTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAF 176
Query: 283 KAQKKSEREQEL 294
K + K ER ++
Sbjct: 177 KREGKGERHGDI 188
Score = 136 (52.9 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/109 (33%), Positives = 60/109 (55%)
Query: 5 QVQHQAQMSG-P---NGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSV- 59
Q+ +Q ++ G P N + N + +L+VG+LD V + LYD FS +GQ++
Sbjct: 70 QILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAP 129
Query: 60 RVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108
+V RD RS GYG+V+Y + A A++ +N L NK I + Y+ +
Sbjct: 130 QVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFK 177
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 277 (102.6 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 81/267 (30%), Positives = 128/267 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G SCK+ T+ + + FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 180 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 291
A V++D GKSK +GFV+F N DA A+ + G+ R+ W K KS +E
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Query: 292 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
K +FE + ++ K +Y + + D+ +++ FS FG I +V +
Sbjct: 186 NNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---- 239
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMI 377
KG FV FST E A+ A+ +NG I
Sbjct: 240 -KGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 250 (93.1 bits), Expect = 5.7e-19, P = 5.7e-19
Identities = 77/275 (28%), Positives = 131/275 (47%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT+ + LFSQ+G S ++ + ++ Y +V + DAA AL
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I
Sbjct: 68 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-------QER 199
++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK QE
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 200 ETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250
T ++ + N KN + TD+ +++ F +G I V + K
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KG 241
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
+ FV F + AA A+ ++NG + + Y GK
Sbjct: 242 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 276
Score = 167 (63.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G S ++ + + FV F DAA A+ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 390 K 390
K
Sbjct: 176 K 176
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 277 (102.6 bits), Expect = 7.3e-23, P = 7.3e-23
Identities = 81/267 (30%), Positives = 128/267 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G SCK+ T+ + + FV+F A A+ +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 180 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 70 GRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 291
A V++D GKSK +GFV+F N DA A+ + G+ R+ W K KS +E
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQE 185
Query: 292 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
K +FE + ++ K +Y + + D+ +++ FS FG I +V +
Sbjct: 186 NNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---- 239
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMI 377
KG FV FST E A+ A+ +NG I
Sbjct: 240 -KGYSFVRFSTHESAAHAIVSVNGTTI 265
Score = 256 (95.2 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 84/300 (28%), Positives = 140/300 (46%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT+ + LFSQ+G S ++ + ++ Y +V + DAA AL
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAA 67
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I
Sbjct: 68 MNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK-------QER 199
++ D +G+SKG+GFV F NK A+NAI + G + +Q+ RK QE
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN 186
Query: 200 ETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250
T ++ + N KN + TD+ +++ F +G I V + K
Sbjct: 187 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KG 241
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 310
+ FV F + AA A+ ++NG E +V K E K F+Q ++ VD Q
Sbjct: 242 YSFVRFSTHESAAHAIVSVNGTTI---EGHVVKCYWGKESPDMTKN-FQQVIRFFVDYSQ 297
Score = 167 (63.8 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 50/181 (27%), Positives = 88/181 (48%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G S ++ + + FV F DAA A+ A+N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAAMN 69
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 70 GRKILGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKS 115
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ M G+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR 175
Query: 390 K 390
K
Sbjct: 176 K 176
>SGD|S000001919 [details] [associations]
symbol:PES4 "Poly(A) binding protein, suppressor of DNA
polymerase epsilon mutation" species:4932 "Saccharomyces
cerevisiae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000001919
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:D50617
EMBL:BK006940 GO:GO:0003723 eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
EMBL:D26442 PIR:S56278 RefSeq:NP_116678.1 ProteinModelPortal:P39684
SMR:P39684 STRING:P39684 EnsemblFungi:YFR023W GeneID:850579
KEGG:sce:YFR023W CYGD:YFR023w OMA:DDCGRSK NextBio:966406
Genevestigator:P39684 GermOnline:YFR023W Uniprot:P39684
Length = 611
Score = 290 (107.1 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 64/190 (33%), Positives = 108/190 (56%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L++GDL VT+ L +F + +S +VC D T++SLG+GY+N+ + +A +A++ L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKS---IDHKALHDTFSSFGNILSCK 148
N+T +N K IRIM S R+ + RK+ N+F NL + + + +DTFS +G ILSCK
Sbjct: 153 NYTKVNGKEIRIMPSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCK 212
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF 208
+ + K GFV FE++++A+N I N K++ G K+ R +T+
Sbjct: 213 LDS-----RKDIGFVYFEDEKTARNVIKMYNNTSFFGKKILCGIHFDKEVRSVPNFETQK 267
Query: 209 NNVFVKNLDE 218
+ + + + E
Sbjct: 268 SRLDAETIIE 277
Score = 166 (63.5 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 64/247 (25%), Positives = 115/247 (46%)
Query: 134 LHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHF 193
+++ S FG + C I D +S F +++ A+ I+K + N+K H
Sbjct: 236 MYNNTSFFGKKILCGIHFDKEVRSVP-NFETQKSRLDAETIIEKEQSL--NEK-----HS 287
Query: 194 LRKQERETVAI-KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252
+ ++E+ I + N++F+KNL TT +D+ F E G I S + + + +
Sbjct: 288 -KGNDKESKNIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKS-IYLSNATKVKYLWA 345
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV ++N+ D+ KA++ N F ++ V +AQ K ER + ++ Q K
Sbjct: 346 FVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFIESQ----------KIS-- 393
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD--PSGISKGSGFVAFSTPEEASRALA 370
L+++NL + E LK L + I K+ D S SGF+ F E+A+R
Sbjct: 394 TLFLENLSAVCNKEFLKYLCHQ-ENIRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFN 452
Query: 371 EMNGKMI 377
+N +++
Sbjct: 453 FLNNRLV 459
Score = 141 (54.7 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 44/164 (26%), Positives = 73/164 (44%)
Query: 111 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 170
+I S +IFIKNL + + FS G I S ++ + + + FV ++N
Sbjct: 296 NIYSSSQNSIFIKNLPTITTRDDILNFFSEVGPIKSIYLS-NATKVKYLWAFVTYKNSSD 354
Query: 171 AQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 230
++ AI + N K++ V K+ER K + +F++NL E LK +
Sbjct: 355 SEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFIESQKISTLFLENLSAVCNKEFLKYLCH 414
Query: 231 EYGTITSAVVMRDG-DGKSKCF-GFVNFENADDAAKAVEALNGK 272
+ I + DG D S + GF+ F N +DA + LN +
Sbjct: 415 QEN-IRPFKIQIDGYDENSSTYSGFIKFRNFEDATRIFNFLNNR 457
Score = 129 (50.5 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 70/294 (23%), Positives = 125/294 (42%)
Query: 132 KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 191
K + + SF + C + + +S G G++ FE+KE A+ A+++LN +N K++ +
Sbjct: 108 KGIFKKYPSFVSAKVCLDSV--TKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIRIM 165
Query: 192 HFLRKQE-RETVAIKTKFNNVFVKNLDESTT---DE------------DLKKIFG----- 230
LR R+ F+N+ + N +T D D +K G
Sbjct: 166 PSLRNTTFRKNFGTNVFFSNLPLNNPLLTTRVFYDTFSRYGKILSCKLDSRKDIGFVYFE 225
Query: 231 EYGTITSAVVMRDGD---GKSKCFGFVNFENADDAAKAVEALNGKKFD-DREWYVGKAQK 286
+ T + + M + GK G ++F D ++V +K D E + K Q
Sbjct: 226 DEKTARNVIKMYNNTSFFGKKILCG-IHF---DKEVRSVPNFETQKSRLDAETIIEKEQS 281
Query: 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 346
+E+ KG +++ K Q +++IKNL + + FSE G I S + +
Sbjct: 282 LNEKHS--KGNDKES-KNIYSSSQN-SIFIKNLPTITTRDDILNFFSEVGPIKSI-YLSN 336
Query: 347 PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQ 400
+ + FV + ++ +A+ N K L V AQ KEER +++Q
Sbjct: 337 ATKVKYLWAFVTYKNSSDSEKAIKRYNNFYFRGKKLLVTRAQDKEERAKFIESQ 390
Score = 126 (49.4 bits), Expect = 0.00017, P = 0.00017
Identities = 42/137 (30%), Positives = 65/137 (47%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
+F+ +L E+ T+E LK IF +Y + SA V D KS G++NFE+ ++A KA+E L
Sbjct: 93 LFIGDLHETVTEETLKGIFKKYPSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEEL 152
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL---GDSIDDE 326
N K + +E + S R + F G N++ NL +
Sbjct: 153 NYTKVNGKEIRI----MPSLRNTTFRKNF------------GTNVFFSNLPLNNPLLTTR 196
Query: 327 KLKELFSEFGTITSCKV 343
+ FS +G I SCK+
Sbjct: 197 VFYDTFSRYGKILSCKL 213
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 278 (102.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 63/184 (34%), Positives = 102/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
++AG + ++YVG LD V++S L++L Q G V+SV + +D T G+G+V
Sbjct: 1 MSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ DA A+ +LN L K I++ + G NIF+ NLD +D K L+DT
Sbjct: 61 FMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D SG SKGF F+ F + E++ A++ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 196 KQER 199
+ +
Sbjct: 180 RDSK 183
Score = 190 (71.9 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 53/184 (28%), Positives = 88/184 (47%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P + ++ I++ LD+ + L + G ++S + D + +GFGFV+F +
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI LN + + K + V ++ V N+FV NLD ++ L
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA-----NIFVGNLDPEVDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK F F+NF + + + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 287 KSER 290
+ +
Sbjct: 180 RDSK 183
Score = 185 (70.2 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 55/189 (29%), Positives = 95/189 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
++V LDE ++ L ++ + G + S + +D + FGFV F +DA A++ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A ++ +D G N+++ NL +D++ L
Sbjct: 75 NMIKLYGKPIKVNKAS---------------AHEKNMDV--GANIFVGNLDPEVDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRD SG SKG F+ F++ E + AL MNG+ + ++ + V+ A
Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
Query: 388 QRKEERRAR 396
+++ + R
Sbjct: 178 FKRDSKGER 186
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 278 (102.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 63/184 (34%), Positives = 102/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
++AG + ++YVG LD V++S L++L Q G V+SV + +D T G+G+V
Sbjct: 1 MSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ DA A+ +LN L K I++ + G NIF+ NLD +D K L+DT
Sbjct: 61 FMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA-NIFVGNLDPEVDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D SG SKGF F+ F + E++ A++ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 196 KQER 199
+ +
Sbjct: 180 RDSK 183
Score = 190 (71.9 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 53/184 (28%), Positives = 88/184 (47%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P + ++ I++ LD+ + L + G ++S + D + +GFGFV+F +
Sbjct: 5 PIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI LN + + K + V ++ V N+FV NLD ++ L
Sbjct: 65 EDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVGA-----NIFVGNLDPEVDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK F F+NF + + + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Query: 287 KSER 290
+ +
Sbjct: 180 RDSK 183
Score = 185 (70.2 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 55/189 (29%), Positives = 95/189 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
++V LDE ++ L ++ + G + S + +D + FGFV F +DA A++ L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A ++ +D G N+++ NL +D++ L
Sbjct: 75 NMIKLYGKPIKVNKAS---------------AHEKNMDV--GANIFVGNLDPEVDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRD SG SKG F+ F++ E + AL MNG+ + ++ + V+ A
Sbjct: 118 DTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
Query: 388 QRKEERRAR 396
+++ + R
Sbjct: 178 FKRDSKGER 186
>SGD|S000001057 [details] [associations]
symbol:MIP6 "Putative RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005643 "nuclear pore" evidence=IPI]
[GO:0006406 "mRNA export from nucleus" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000001057 GO:GO:0005737 GO:GO:0000166
EMBL:BK006934 Gene3D:3.30.70.330 GO:GO:0005643 GO:GO:0003723
GO:GO:0006406 EMBL:U10400 PIR:S46788 RefSeq:NP_011879.1
ProteinModelPortal:P38760 SMR:P38760 DIP:DIP-6647N IntAct:P38760
MINT:MINT-644353 STRING:P38760 EnsemblFungi:YHR015W GeneID:856408
KEGG:sce:YHR015W CYGD:YHR015w eggNOG:NOG271400
GeneTree:ENSGT00550000075863 HOGENOM:HOG000000869 OrthoDB:EOG45HW68
NextBio:981953 Genevestigator:P38760 GermOnline:YHR015W
Uniprot:P38760
Length = 659
Score = 244 (91.0 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 58/170 (34%), Positives = 91/170 (53%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T SL++G+L VT+ L +F + S +VCRD T++SLGYGY+N+ + DA A
Sbjct: 110 TNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESAR 169
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKS-GTGNIFIKNL---DKSIDHKALHDTFSSFGNI 144
N+T + ++IM S ++ RK+ GT N+F NL + + ++ + +GN+
Sbjct: 170 KEFNYTVFFGQEVKIMPSMKNTLFRKNIGT-NVFFSNLPLENPQLTTRSFYLIMIEYGNV 228
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG-HF 193
LSC + + K GFV F+N SA+N I K N ++ G HF
Sbjct: 229 LSCLLE-----RRKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHF 273
Score = 170 (64.9 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 62/293 (21%), Positives = 127/293 (43%)
Query: 113 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESA 171
+ S T ++FI NL ++ + L F + + S K+ D + +S G+G++ F++K A
Sbjct: 106 KTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDA 165
Query: 172 QNAIDKLNGMLINDKQVFVGHFLRKQE-RETVAIKTKFNNVFVKNLDESTTDEDLKKIFG 230
++A + N + ++V + ++ R+ + F+N+ ++N T I
Sbjct: 166 ESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLEN--PQLTTRSFYLIMI 223
Query: 231 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVG-------K 283
EYG + S ++ R K GFV F+N A ++ N ++F + G +
Sbjct: 224 EYGNVLSCLLER-----RKNIGFVYFDNDISARNVIKKYNNQEFFGNKIICGLHFDKEVR 278
Query: 284 AQKKSEREQELKGQ---FEQ---AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT 337
+ + + +++ G E A D + + +KNL E++ + FS G
Sbjct: 279 TRPEFTKRKKMIGSDIVIEDELLASNNLSDNARSKTILVKNLPSDTTQEEVLDYFSTIGP 338
Query: 338 ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390
I S + + + FV + EE+ +A +N + + ++V + K
Sbjct: 339 IKSVFISEKQAN-TPHKAFVTYKNEEESKKAQKCLNKTIFKNHTIWVGPGKDK 390
Score = 124 (48.7 bits), Expect = 0.00031, P = 0.00031
Identities = 47/165 (28%), Positives = 77/165 (46%)
Query: 186 KQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG- 244
+QVF + ++ + +K N++F+ NL + T+E L+KIF Y + SA V RD
Sbjct: 88 EQVFEKTVAKGSVQKYITKTSKTNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFL 147
Query: 245 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKE 304
KS +G++NF++ +DA A + N F G QE+K +MK
Sbjct: 148 TKKSLGYGYLNFKDKNDAESARKEFNYTVF------FG---------QEVK--IMPSMKN 190
Query: 305 TV-DKFQGLNLYIKNL---GDSIDDEKLKELFSEFGTITSCKVMR 345
T+ K G N++ NL + + E+G + SC + R
Sbjct: 191 TLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSCLLER 235
Score = 94 (38.1 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+ VKNL TT E++ F G I S V + + + FV ++N +++ KA + LN
Sbjct: 315 ILVKNLPSDTTQEEVLDYFSTIGPIKS-VFISEKQANTPHKAFVTYKNEEESKKAQKCLN 373
Query: 271 GKKFDDREWYVGKAQKKSEREQ 292
F + +VG + K Q
Sbjct: 374 KTIFKNHTIWVGPGKDKPVHNQ 395
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 278 (102.9 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 64/184 (34%), Positives = 103/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
+AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DT
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 196 KQER 199
K +
Sbjct: 180 KDSK 183
Score = 197 (74.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 195 (73.7 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 287 KSER 290
K +
Sbjct: 180 KDSK 183
Score = 42 (19.8 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 449 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 494
GH + P G Q P G P P MG +P R G PM
Sbjct: 320 GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--LPPRGPPFGSPM 362
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 278 (102.9 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 64/184 (34%), Positives = 103/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
+AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DT
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 196 KQER 199
K +
Sbjct: 180 KDSK 183
Score = 197 (74.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 195 (73.7 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 287 KSER 290
K +
Sbjct: 180 KDSK 183
Score = 41 (19.5 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 449 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 494
GH + P G Q P G P P MG +P R G PM
Sbjct: 320 GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 278 (102.9 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 64/184 (34%), Positives = 103/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
+AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DT
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 196 KQER 199
K +
Sbjct: 180 KDSK 183
Score = 197 (74.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 195 (73.7 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 287 KSER 290
K +
Sbjct: 180 KDSK 183
Score = 41 (19.5 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 449 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 494
GH + P G Q P G P P MG +P R G PM
Sbjct: 320 GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 278 (102.9 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 64/184 (34%), Positives = 103/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
+AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DT
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 196 KQER 199
K +
Sbjct: 180 KDSK 183
Score = 197 (74.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 195 (73.7 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 287 KSER 290
K +
Sbjct: 180 KDSK 183
Score = 41 (19.5 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 449 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 494
GH + P G Q P G P P MG +P R G PM
Sbjct: 320 GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 278 (102.9 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 64/184 (34%), Positives = 103/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
+AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DT
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 196 KQER 199
K +
Sbjct: 180 KDSK 183
Score = 197 (74.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 195 (73.7 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 287 KSER 290
K +
Sbjct: 180 KDSK 183
Score = 41 (19.5 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 449 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 494
GH + P G Q P G P P MG +P R G PM
Sbjct: 320 GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 278 (102.9 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 64/184 (34%), Positives = 103/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
+AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DT
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 196 KQER 199
K +
Sbjct: 180 KDSK 183
Score = 197 (74.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 195 (73.7 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 287 KSER 290
K +
Sbjct: 180 KDSK 183
Score = 41 (19.5 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 16/46 (34%), Positives = 18/46 (39%)
Query: 449 GHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPM 494
GH + P G Q P G P P MG +P R G PM
Sbjct: 320 GHPHAGPPGSGGQPPPRPP-PGMPHPGPPPMG--MPPRGPPFGSPM 362
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 279 (103.3 bits), Expect = 3.2e-22, P = 3.2e-22
Identities = 65/259 (25%), Positives = 136/259 (52%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NLD ++ + F+ G++ K+ DGS + FV+F + A A+ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 239
L+ D+++ V + ++++ T+ +VFV +L ++ L++ F +G ++ A
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAK 165
Query: 240 VMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQF 298
V+RD + KSK +GFV++ ++A +A+E +NG+ R A +K +++
Sbjct: 166 VIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYN 225
Query: 299 EQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGF 356
E++ E ++ G N +Y+ N+ +DE +++ F+ FG IT ++ + +G F
Sbjct: 226 EKSYDEIYNQTSGDNTSVYVGNIASLTEDE-IRQGFASFGRITEVRIFK-----MQGYAF 279
Query: 357 VAFSTPEEASRALAEMNGK 375
V F + A++A+ +MN +
Sbjct: 280 VKFDNKDAAAKAIVQMNNQ 298
Score = 270 (100.1 bits), Expect = 4.5e-21, P = 4.5e-21
Identities = 71/261 (27%), Positives = 138/261 (52%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+LD VT+ + LF+Q+G V +V D S Y +V +++ A++AL
Sbjct: 47 TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQT 103
Query: 91 LNFTPLNNKSIRIMYS----HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS 146
+N L ++ +++ ++ + I + ++F+ +L +D++ L + F FG++
Sbjct: 104 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 163
Query: 147 CKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK---QER--- 199
K+ D + +SKG+GFV + +E A+ AI+++NG + + + RK QE+
Sbjct: 164 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSH 223
Query: 200 ------ETVAIKTKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251
+ + +T +N V+V N+ S T++++++ F +G IT + K + +
Sbjct: 224 YNEKSYDEIYNQTSGDNTSVYVGNI-ASLTEDEIRQGFASFGRITEVRIF-----KMQGY 277
Query: 252 GFVNFENADDAAKAVEALNGK 272
FV F+N D AAKA+ +N +
Sbjct: 278 AFVKFDNKDAAAKAIVQMNNQ 298
Score = 226 (84.6 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 53/181 (29%), Positives = 100/181 (55%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NLD + T++ + +F + G++T V+ DG + FV F + A++A++ +N
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP--YAFVEFSDHGQASQALQTMN 105
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
+ DRE V A + +++ ++ +T F ++++ +L +D++KL+E
Sbjct: 106 KRLLLDREMKVNWAVEPGQQQSKI---------DTTRHF---HVFVGDLSSEVDNQKLRE 153
Query: 331 LFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F FG ++ KV+RD + SKG GFV++ EEA RA+ +MNG+ + + + A R
Sbjct: 154 AFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATR 213
Query: 390 K 390
K
Sbjct: 214 K 214
Score = 166 (63.5 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 48/170 (28%), Positives = 87/170 (51%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL V + +L + F G V +V RD +T +S GYG+V+Y +A RA++ +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK--- 148
N L ++IR ++ R P ++ + + K+ D+ + + +T GNI S
Sbjct: 197 NGQWLGRRTIRTNWATRKPGDQEKPS-HYNEKSYDEIYNQTSGDNTSVYVGNIASLTEDE 255
Query: 149 ----IATDGS------GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
A+ G + +G+ FV+F+NK++A AI ++N + + V
Sbjct: 256 IRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLV 305
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 278 (102.9 bits), Expect = 3.3e-22, P = 3.3e-22
Identities = 64/184 (34%), Positives = 103/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
+AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V
Sbjct: 1 MAAGPISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DT
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 196 KQER 199
K +
Sbjct: 180 KDSK 183
Score = 197 (74.4 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 193 (73.0 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 287 KSER 290
K +
Sbjct: 180 KDSK 183
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 278 (102.9 bits), Expect = 5.9e-22, P = 5.9e-22
Identities = 64/184 (34%), Positives = 103/184 (55%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
+AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V
Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVE 60
Query: 78 YANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+ + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DT
Sbjct: 61 FLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFIGNLDPEIDEKLLYDT 119
Query: 138 FSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
FS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG + ++ + V + +
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 196 KQER 199
K +
Sbjct: 180 KDSK 183
Score = 197 (74.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 57/189 (30%), Positives = 100/189 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
V+V LDE ++ L ++F + G + + + +D G+ + +GFV F + +DA A++ +
Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N K + V KA A + +D G N++I NL ID++ L
Sbjct: 75 NMIKLYGKPIRVNKAS---------------AHNKNLDV--GANIFIGNLDPEIDEKLLY 117
Query: 330 ELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG I K+MRDP +G SKG F+ F++ + + A+ MNG+ + ++P+ V+ A
Sbjct: 118 DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Query: 388 QRKEERRAR 396
+K+ + R
Sbjct: 178 FKKDSKGER 186
Score = 195 (73.7 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 52/184 (28%), Positives = 90/184 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
P ++ +++ LD+ + L + F G +++ + D +GQ +G+GFV+F ++
Sbjct: 5 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 64
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
E A AI +N + + K + V + V N+F+ NLD ++ L
Sbjct: 65 EDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFIGNLDPEIDEKLLYDT 119
Query: 229 FGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286
F +G I +MRD D G SK + F+NF + D + A+EA+NG+ +R V A K
Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Query: 287 KSER 290
K +
Sbjct: 180 KDSK 183
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 181 (68.8 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 50/194 (25%), Positives = 98/194 (50%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCK-IATDGSGQSKGFGFVQFENKESAQNAIDKL 178
+F+ + KS + + + + F++ NI S I + + +G FV ++E A AI++L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKF-NNVFVKNLDESTTDEDLKKIFGEYGTITS 237
+ N K+ F G Q + + + K + +FV L S +E ++++F +G +
Sbjct: 65 H----NSKK-FQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVED 119
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD--REWYVG-----KAQKKSER 290
++R + +SK GF+ F+N + A A+ LNG K D V K +KK ++
Sbjct: 120 ICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKDKKKKQK 179
Query: 291 EQELKGQFEQAMKE 304
+Q+++ Q +Q ++
Sbjct: 180 QQQIQIQMQQRQQQ 193
Score = 174 (66.3 bits), Expect = 4.2e-21, Sum P(2) = 4.2e-21
Identities = 42/162 (25%), Positives = 87/162 (53%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
++T L+VG + + + ++ +LF+ + + SV + ++ +T G +V+ + +A RA
Sbjct: 1 MSTKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRA 60
Query: 88 LDVLNFTP-----LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG 142
++ L+ + LNN ++ S ++ K +F+ L +S + + + + F G
Sbjct: 61 IEQLHNSKKFQGVLNNLQVKYADSEQEKLASK-----LFVGMLPRSYEEEQIRELFEPHG 115
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184
+ I + +SKG GF++F+N+ESA +AI LNGM ++
Sbjct: 116 VVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLD 157
Score = 160 (61.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 54/202 (26%), Positives = 102/202 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 269
+FV + +S +E++K +F I S ++++ + + FV+ + ++A +A+E L
Sbjct: 5 LFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQL 64
Query: 270 NGKKFDDREWYVGKAQKK-SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
+ K + + Q K ++ EQE + A K L++ L S ++E++
Sbjct: 65 HNSK--KFQGVLNNLQVKYADSEQE-----KLASK----------LFVGMLPRSYEEEQI 107
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVS-KPLYVAV 386
+ELF G + ++R P+ SKG GF+ F E A A+A +NG K+ S PL V
Sbjct: 108 RELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKF 167
Query: 387 A-----QRKEERRARLQAQFSQ 403
A ++K++++ ++Q Q Q
Sbjct: 168 ADTEKDKKKKQKQQQIQIQMQQ 189
Score = 152 (58.6 bits), Expect = 6.8e-22, Sum P(2) = 6.8e-22
Identities = 30/80 (37%), Positives = 50/80 (62%)
Query: 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRA 368
QG NL++ N+ + D L LF ++G + S KV D + G+SKG GFV++ P A+ A
Sbjct: 401 QGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLA 460
Query: 369 LAEMNGKMIVSKPLYVAVAQ 388
++ ++G+M+ K L V++ Q
Sbjct: 461 ISNLHGQMMAGKKLKVSLKQ 480
Score = 128 (50.1 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGF 162
M + ++ S+ G+ N+F+ N+ L F +G ++S K+ D +G SKGFGF
Sbjct: 390 MGNKKNQSVGPQGS-NLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGF 448
Query: 163 VQFENKESAQNAIDKLNGMLINDKQVFV 190
V ++N SA AI L+G ++ K++ V
Sbjct: 449 VSYDNPASANLAISNLHGQMMAGKKLKV 476
Score = 120 (47.3 bits), Expect = 9.0e-18, Sum P(2) = 9.0e-18
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 267
+N+FV N+ +D DL +F +YG + SA V D + G SK FGFV+++N A A+
Sbjct: 403 SNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANLAIS 462
Query: 268 ALNGKKFDDREWYVGKAQKKSEREQ 292
L+G+ ++ V Q + Q
Sbjct: 463 NLHGQMMAGKKLKVSLKQTSGQGSQ 487
Score = 73 (30.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 20/70 (28%), Positives = 35/70 (50%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + L + L+VG L + + Q+ +LF G V + + R ++ S G G++ + N
Sbjct: 84 SEQEKLASKLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSE-SKGCGFIKFDNRE 142
Query: 83 DAARALDVLN 92
A A+ LN
Sbjct: 143 SALSAIATLN 152
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 278 (102.9 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 60/169 (35%), Positives = 93/169 (55%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LY+ +LD V + L +LF Q G V +V + RD GYG+V Y + A ++
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
LN T L K++R + +D G N+FI NLD +D K L D FSSFG I++ K+
Sbjct: 81 LNMTKLFGKALRCNKATQDKRSFDVGA-NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM 139
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ SKG GF+ ++N ES+ AI+ +N I +K+V + + +K +
Sbjct: 140 RNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
Score = 202 (76.2 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 60/227 (26%), Positives = 110/227 (48%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 152
FT N+ I +Y ++ ++I NLD +D + L + F GN+ + I D
Sbjct: 2 FTQHKNQEISHIYE-------RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRD 54
Query: 153 G-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 211
+G G+GFV++E + + A + LN + K + Q++ + + N+
Sbjct: 55 KINGYHAGYGFVEYEYEYECEYAANILNMTKLFGKALRCNK--ATQDKRSFDVGA---NL 109
Query: 212 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 271
F+ NLD+ ++ L IF +G I + VMR+ D SK GF++++N + + A+E +N
Sbjct: 110 FIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNN 169
Query: 272 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 318
+ +++ ++ A KK + E G A + + + LNLY N
Sbjct: 170 QFICNKKVHISYAFKKDSKG-ERHGT---AAERFIAANKALNLYPLN 212
Score = 177 (67.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 39/107 (36%), Positives = 64/107 (59%)
Query: 293 ELKGQFEQAMKETVDK--FQ-GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
+L G+ + K T DK F G NL+I NL D +D++ L ++FS FG I + KVMR+
Sbjct: 85 KLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDD 144
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396
SKG GF+++ E + A+ MN + I +K ++++ A +K+ + R
Sbjct: 145 TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGER 191
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 278 (102.9 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 60/169 (35%), Positives = 93/169 (55%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LY+ +LD V + L +LF Q G V +V + RD GYG+V Y + A ++
Sbjct: 21 TLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYECEYAANI 80
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
LN T L K++R + +D G N+FI NLD +D K L D FSSFG I++ K+
Sbjct: 81 LNMTKLFGKALRCNKATQDKRSFDVGA-NLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVM 139
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER 199
+ SKG GF+ ++N ES+ AI+ +N I +K+V + + +K +
Sbjct: 140 RNEDDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
Score = 202 (76.2 bits), Expect = 5.3e-13, P = 5.3e-13
Identities = 60/227 (26%), Positives = 110/227 (48%)
Query: 93 FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 152
FT N+ I +Y ++ ++I NLD +D + L + F GN+ + I D
Sbjct: 2 FTQHKNQEISHIYE-------RNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRD 54
Query: 153 G-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNV 211
+G G+GFV++E + + A + LN + K + Q++ + + N+
Sbjct: 55 KINGYHAGYGFVEYEYEYECEYAANILNMTKLFGKALRCNK--ATQDKRSFDVGA---NL 109
Query: 212 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 271
F+ NLD+ ++ L IF +G I + VMR+ D SK GF++++N + + A+E +N
Sbjct: 110 FIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDDTSKGHGFISYDNFESSDLAIENMNN 169
Query: 272 KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 318
+ +++ ++ A KK + E G A + + + LNLY N
Sbjct: 170 QFICNKKVHISYAFKKDSKG-ERHGT---AAERFIAANKALNLYPLN 212
Score = 177 (67.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 39/107 (36%), Positives = 64/107 (59%)
Query: 293 ELKGQFEQAMKETVDK--FQ-GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
+L G+ + K T DK F G NL+I NL D +D++ L ++FS FG I + KVMR+
Sbjct: 85 KLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNEDD 144
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396
SKG GF+++ E + A+ MN + I +K ++++ A +K+ + R
Sbjct: 145 TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKGER 191
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 274 (101.5 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 82/286 (28%), Positives = 144/286 (50%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGN--ILSCKIATDG-SGQSKGFGFVQFENKESAQNAID 176
I++ +L +D L+ F+S I+S K+ + +G S+G+GFV+FE+ + A +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 177 KLNGM-LINDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNLDESTTDEDLKKIFGE-YG 233
+ NG + N Q F ++ E + ++FV +L +D L + F E Y
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYP 224
Query: 234 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 292
++ +A V+ D + G+SK +GFV F + ++ KA+ +NG K R +G A +
Sbjct: 225 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGY 284
Query: 293 ELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
+ +G + + T + +N +++ L S+ DE LK+ FSEFG I S K+ P G
Sbjct: 285 QQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVG- 340
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396
KG GFV F A AL ++NG +I + + ++ + ++ R
Sbjct: 341 -KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 385
Score = 174 (66.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 44/171 (25%), Positives = 92/171 (53%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQ--VLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+++VGDL + ++ L F+ + ++S++V R+ S GYG+V + + A + L
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVL 163
Query: 89 DVLNFTPLNN--KSIRI---MYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSS-F 141
N P+ N + R+ +S + + +G +IF+ +L + LH+TFS +
Sbjct: 164 QEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223
Query: 142 GNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 191
++ + K+ D + G+SKG+GFV+F ++ A+ ++NG+ + + + +G
Sbjct: 224 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 274
Score = 145 (56.1 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 46/172 (26%), Positives = 84/172 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQ-VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
S++VGDL +V+D+ L++ FS+ V + +V D +T RS GYG+V + + + +A+
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 90 VLNFTPLNNKSIRI--MYSHRDPSIRKSG---TGNIFIKNLDKSIDHKALHDTFSSFGNI 144
+N +++++RI + ++ G F ++ +I+ S
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTD 319
Query: 145 LSCKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
K G+ KG GFVQF N+ +A+ A++KLNG +I + V
Sbjct: 320 EDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 371
Score = 128 (50.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 30/97 (30%), Positives = 56/97 (57%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
P+G + G+ + T+++VG LD +VTD L FS+ G+++SV++ G G
Sbjct: 292 PSGAFTRSEGDT-INTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI------PVGKGCG 344
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS 111
+V + N +A AL+ LN T + +++R+ + R+P+
Sbjct: 345 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWG-RNPA 380
>UNIPROTKB|E2RRF5 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:AAEX03014696
Ensembl:ENSCAFT00000014561 Uniprot:E2RRF5
Length = 968
Score = 182 (69.1 bits), Expect = 3.5e-16, Sum P(2) = 3.5e-16
Identities = 47/164 (28%), Positives = 86/164 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 266
+F+KNL+ STT+E LK +F + G + S + + G+ S FGFV + + A KA+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ L G D + V +++ ++ + + K+T K + ++N+ D
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSK-----ILVRNIPFQADKR 846
Query: 327 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 368
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 847 EIQELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 180 (68.4 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 45/164 (27%), Positives = 83/164 (50%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR---SLGYGYVNYANPADAARA 87
+L++ +L+F+ T+ L +FS+ G V S + + + S+G+G+V Y P A +A
Sbjct: 731 TLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKA 790
Query: 88 LDVLNFTPLNNKSIRIMYSHR--DPSI---------RKSGTGNIFIKNLDKSIDHKALHD 136
L L +++ + + S R P++ RK T I ++N+ D + + +
Sbjct: 791 LKQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQE 850
Query: 137 TFSSFGNILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDKL 178
FS+FG + + ++ G+G +GFGFV F K+ A+ A L
Sbjct: 851 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQAL 894
Score = 178 (67.7 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 61/240 (25%), Positives = 113/240 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIAT--DGSGQ--SKGFGFVQFENKESAQNAI 175
+FIKNL+ S + L FS G + SC I+ + +G+ S GFGFV++ E AQ A+
Sbjct: 732 LFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGFGFVEYRKPEQAQKAL 791
Query: 176 DKLNGMLINDKQVFVG-------HFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+L G +++ ++ V L ++ V K + + V+N+ +++++
Sbjct: 792 KQLQGHVVDSHKLEVRISERATKPALTSTRKKQVPRKQTTSKILVRNIPFQADKREIQEL 851
Query: 229 FGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEAL--NGKKFDDR---EWYV 281
F +G + + + + G G + FGFV+F DA +A +AL + + R EW
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFQALCHSTHLYGRRLVLEWAD 911
Query: 282 GKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC 341
+ ++ R + + F + K+ + L+ ++ L DS D + + L GT C
Sbjct: 912 SEVSLQALRRKTAE-HFHEPPKKK--RSVVLDEILEQLEDSESDSEEQTLQLRAGTERGC 968
Score = 150 (57.9 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 33/95 (34%), Positives = 56/95 (58%)
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSG--ISKGS 354
E+ +E + G L+IKNL S +E LK +FS+ G + SC + + + +G +S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKAGMVKSCSISKKKNKAGELLSMGF 776
Query: 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
GFV + PE+A +AL ++ G ++ S L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDSHKLEVRISER 811
Score = 128 (50.1 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 45/174 (25%), Positives = 82/174 (47%)
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAV----EALNGKK---FDDREWYVGKAQKKSEREQ 292
++R+ G + FV+F + ++ +A+ E + G+ F ++ K K+ +
Sbjct: 327 IVRNAHGNKTGYIFVDFRSEEEIKQALKCNREYMGGRYIEIFREKNVPTTKGPLKNSAKP 386
Query: 293 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 351
+G+ +E D L+I+NL + +E L+ LFS+FG ++ D +
Sbjct: 387 -WQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKP 445
Query: 352 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMR 405
KG FV F PE A RA AE++G++ + L+V + K+E Q S +
Sbjct: 446 KGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYK 499
Score = 125 (49.1 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 35/132 (26%), Positives = 66/132 (50%)
Query: 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 239
G L N + + G L + E E + +F++NL ++T+EDL+++F ++G ++
Sbjct: 378 GPLKNSAKPWQGRTLGENEEEEDLADS--GRLFIRNLPYTSTEEDLQRLFSKFGPLSELH 435
Query: 240 VMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKKSEREQELKG 296
D K K F FV F + A +A ++G+ F R +V +K++ + + +G
Sbjct: 436 YPIDSLTKKPKGFAFVTFIFPEHAVRAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTQG 495
Query: 297 QFEQAMKETVDK 308
+ KE+ DK
Sbjct: 496 SSYKKKKESKDK 507
Score = 105 (42.0 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+ +KNL + F+SFG + C + G+ + FGF+ F+++E A +A++ N
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNHFN 63
Query: 180 GMLINDKQVFV 190
I+ ++ V
Sbjct: 64 RSFIDTSRITV 74
Score = 104 (41.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ + VKNL ++ +++F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEALSALNH 61
Query: 269 LNGKKFDD 276
N + F D
Sbjct: 62 FN-RSFID 68
Score = 102 (41.0 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 53/256 (20%), Positives = 105/256 (41%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L++ +L + T+ L LFS+ G + + D T++ G+ +V + P A RA +
Sbjct: 407 LFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDSLTKKPKGFAFVTFIFPEHAVRAYAEV 466
Query: 92 NFTPLNNKSIRIMYSH-RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI-LSCKI 149
+ + + ++ S + + + T K +S D KA + ++ + +
Sbjct: 467 DGQVFQGRMLHVLPSTIKKEASEDTDTQGSSYKKKKESKD-KANSSSSHNWNTLFMGPNA 525
Query: 150 ATDGSGQSKGFGFVQ-FENKESAQNAIDKLNG--MLINDKQVFV-GHFLRKQERETVAIK 205
D Q Q F+++ A+ G L+ + + F+ + + A +
Sbjct: 526 VADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLLDNGVSLDSFSQAAAE 585
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
+ VKNL T +L++ FG +G++ V++ +G G + V F +A KA
Sbjct: 586 RSKTVILVKNLPAGTLVAELQETFGRFGSL-GRVLLPEG-GIT---AIVEFLEPLEARKA 640
Query: 266 VEALNGKKFDDREWYV 281
L KF Y+
Sbjct: 641 FRHLAYSKFHHTPLYL 656
Score = 51 (23.0 bits), Expect = 1.9e-15, Sum P(3) = 1.9e-15
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVL--SVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
L V +L + + + LF+ G + S++ +D R+ +G++ + + +A AL+
Sbjct: 4 LIVKNLPNGMKEDRFRQLFASFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEALSALN 60
Query: 90 VLNFTPLNNKSIRIMY--SHRDPS 111
N + ++ I + + S DP+
Sbjct: 61 HFNRSFIDTSRITVEFCKSFGDPT 84
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 189 (71.6 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 48/164 (29%), Positives = 87/164 (53%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 266
+F+KNL+ STT+E LK +F + G + S + + G S FGFV ++ + A KA+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ L G D + V +++ ++ + + A K+T K + ++N+ D
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSK-----ILVRNIPFQADSR 851
Query: 327 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 368
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 852 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRA 895
Score = 180 (68.4 bits), Expect = 4.3e-10, P = 4.3e-10
Identities = 46/164 (28%), Positives = 83/164 (50%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR---SLGYGYVNYANPADAARA 87
+L++ +L+F+ T+ L +FS+VG V S + + + S+G+G+V Y P A +A
Sbjct: 736 TLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKA 795
Query: 88 LDVLNFTPLNNKSIRIMYSHR--DPS---------IRKSGTGNIFIKNLDKSIDHKALHD 136
L L ++ + + S R P+ RK T I ++N+ D + + +
Sbjct: 796 LKQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIRE 855
Query: 137 TFSSFGNILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDKL 178
FS+FG + + ++ G+G +GFGFV F K+ A+ A + L
Sbjct: 856 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Score = 176 (67.0 bits), Expect = 7.9e-10, Sum P(2) = 7.9e-10
Identities = 47/163 (28%), Positives = 82/163 (50%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAI 175
+FIKNL+ S + L FS G + SC I+ G+ S GFGFV+++ E AQ A+
Sbjct: 737 LFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKAL 796
Query: 176 DKLNGMLINDK--QVFVGHFLRKQ-----ERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+L G +++ +V + K ++ VA K + + V+N+ +++++
Sbjct: 797 KQLQGHVVDGHKLEVRISERATKPAPTATRKKQVARKQTTSKILVRNIPFQADSREIREL 856
Query: 229 FGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEAL 269
F +G + + + + G G + FGFV+F DA +A AL
Sbjct: 857 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFFTKQDAKRAFNAL 899
Score = 149 (57.5 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSG--ISKGS 354
E+ +E + G L+IKNL S +E LK +FS+ G + SC + + + +G +S G
Sbjct: 722 EEEEEEEEESLPGCTLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGF 781
Query: 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
GFV + PE+A +AL ++ G ++ L V +++R
Sbjct: 782 GFVEYKKPEQAQKALKQLQGHVVDGHKLEVRISER 816
Score = 136 (52.9 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 42/161 (26%), Positives = 81/161 (50%)
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAV----EALNGKK---FDDREWYVGKAQKKSEREQ 292
++R+ G + FV+F + ++ KA+ E + G+ F ++ KA K+ +
Sbjct: 325 IVRNAHGNKTGYVFVDFSSEEEVKKALQCNREYMGGRYIEVFREKSIPTAKAPPKNSTKA 384
Query: 293 ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGIS 351
+G+ +E D L+++NL + +E L++LFS++G ++ D +
Sbjct: 385 -WQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKP 443
Query: 352 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
KG FV F PE A +A AE++G++ + L+V + K+E
Sbjct: 444 KGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 484
Score = 121 (47.7 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 36/129 (27%), Positives = 63/129 (48%)
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 243
N + + G L + E E + +FV+NL ++++EDL+K+F +YG ++ D
Sbjct: 380 NSTKAWQGRTLGEHEEEEDLADS--GRLFVRNLPYTSSEEDLEKLFSKYGPLSELHYPID 437
Query: 244 G-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV--GKAQKKSEREQELKGQFE- 299
K K F FV F + A KA ++G+ F R +V +K++ + + G
Sbjct: 438 SLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASEDTDTPGSSSY 497
Query: 300 QAMKETVDK 308
+ KE+ DK
Sbjct: 498 KKKKESKDK 506
Score = 110 (43.8 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+ +KNL + + F++FG + C + G+ + FGF+ F+++E AQ A++ N
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNHFN 63
Query: 180 GMLINDKQVFV 190
I+ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 106 (42.4 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ + VKNL +E +++F +GT+T + DGK + FGF+ F++ ++A A+
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQTALNH 61
Query: 269 LNGKKFDD 276
N K F D
Sbjct: 62 FN-KSFID 68
Score = 101 (40.6 bits), Expect = 3.5e-12, Sum P(2) = 3.5e-12
Identities = 52/250 (20%), Positives = 104/250 (41%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L+V +L + ++ L LFS+ G + + D T++ G+ +V + P A +A +
Sbjct: 405 LFVRNLPYTSSEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 464
Query: 92 NFTPLNNKSIRIMYS--HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI-LSCK 148
+ + + ++ S ++ S G+ K +S D KA + ++ + +
Sbjct: 465 DGQVFQGRMLHVLPSTIKKEASEDTDTPGSSSYKKKKESKD-KASSSSSHNWNTLFMGPN 523
Query: 149 IATDGSGQSKGFGFVQ-FENKESAQNAIDKLNG--MLINDKQVFV-GHFLRKQERETVAI 204
D Q Q F+++ A+ G L+ + + F+ + + A
Sbjct: 524 AVADAIAQKYNSTKSQVFDHETKGSVAVRVALGETQLVQEVRRFLLDNGVSLDSFSQAAA 583
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
+ + KNL T +L++ FG +G++ V++ +G G + V F A +A K
Sbjct: 584 ERSKTVILAKNLPAGTQAAELQETFGRFGSL-GRVLLPEG-GVT---AIVEFLEALEARK 638
Query: 265 AVEALNGKKF 274
A L KF
Sbjct: 639 AFRHLAYSKF 648
Score = 50 (22.7 bits), Expect = 7.9e-15, Sum P(3) = 7.9e-15
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVL--SVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
L V +L + + + LF+ G + S++ +D R+ +G++ + + +A AL+
Sbjct: 4 LIVKNLPNGMKEERFRQLFTAFGTLTDCSLKFTKDGKFRK---FGFIGFKSEEEAQTALN 60
Query: 90 VLNFTPLNNKSIRIMY--SHRDPS 111
N + ++ I + + S DP+
Sbjct: 61 HFNKSFIDTSRITVEFCKSFGDPT 84
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 253 (94.1 bits), Expect = 7.5e-21, P = 7.5e-21
Identities = 75/267 (28%), Positives = 133/267 (49%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF-ENKESAQNAIDKL 178
+++ NL + + + FS G SCK+ D +G + FV+F EN+ +A A+ +
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAA-ALAAM 68
Query: 179 NGMLI--NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 236
NG I D +V Q+++T F+ VFV +L + +D++ F +G I+
Sbjct: 69 NGRKILGKDMKVNWASTPSSQKKDT---SNHFH-VFVGDLSPEISTDDVRAAFAPFGKIS 124
Query: 237 SAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK-SEREQEL 294
A V++D GKSK +GF++F N DA A++ +NG+ R+ A +K S +
Sbjct: 125 DARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNN 184
Query: 295 KGQFEQAM--KETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
+G + + +E +++ N +Y + + D+ +++ FS FG I +V +
Sbjct: 185 EGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPE---- 240
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMI 377
KG FV F + E A+ A+ +NG I
Sbjct: 241 -KGYSFVRFDSHEGAAHAIVSVNGTCI 266
Score = 220 (82.5 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 79/291 (27%), Positives = 138/291 (47%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + +FSQ+G S ++ D T + Y +V + AA AL
Sbjct: 10 TLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAAALAA 67
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N + K +++ ++ PS +K T N +F+ +L I + F+ FG I
Sbjct: 68 MNGRKILGKDMKVNWAST-PSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKISDA 126
Query: 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT 206
++ D +G+SKG+GF+ F NK A++AI ++NG + +Q+ RK A K+
Sbjct: 127 RVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPS----APKS 182
Query: 207 KFNNVFVKNLD-ESTTDEDLKKIFGEY-GTITSAV---VMRDGD---GK--------SKC 250
K+L E ++ Y G I S + +MR G+ K
Sbjct: 183 NNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKG 242
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK--AQKKSEREQELKGQ 297
+ FV F++ + AA A+ ++NG + + Y GK A +S ++ + Q
Sbjct: 243 YSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQ 293
Score = 169 (64.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 48/181 (26%), Positives = 90/181 (49%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G S ++ D G + FV F AA A+ A+N
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDP-YCFVEFYENRHAAAALAAMN 69
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K ++ V A S ++ K+T + F ++++ +L I + ++
Sbjct: 70 GRKILGKDMKVNWASTPSSQK-----------KDTSNHF---HVFVGDLSPEISTDDVRA 115
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GF++F +A A+ +MNG+ + + + A R
Sbjct: 116 AFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATR 175
Query: 390 K 390
K
Sbjct: 176 K 176
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 269 (99.8 bits), Expect = 9.2e-21, P = 9.2e-21
Identities = 81/286 (28%), Positives = 142/286 (49%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGN--ILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 176
I++ +L +D L+ +F+S I+S K+ + +G S+G+GFV+FE+ + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 177 KLNGMLI-NDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNLDESTTDEDLKKIFGE-YG 233
+ NG + N Q F ++ E + ++FV +L +D L + F E Y
Sbjct: 163 EFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYP 222
Query: 234 TITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ-KKSERE 291
++ +A V+ D + G+SK +GFV F + ++ KA+ +NG K R +G A +K+
Sbjct: 223 SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPATPRKTNGY 282
Query: 292 QELKGQFEQA-MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
Q+ G + +++ L S+ DE LK+ F+EFG I S K+ P G
Sbjct: 283 QQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVG- 338
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396
KG GFV F A AL ++NG +I + + ++ + ++ R
Sbjct: 339 -KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQPR 383
Score = 174 (66.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 45/171 (26%), Positives = 93/171 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQ--VLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+++VGDL + ++ L F+ + ++SV+V R+ + S GYG+V + + A + L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 89 DVLNFTPLNN--KSIRI---MYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSS-F 141
N T + N + R+ +S + + +G +IF+ +L + LH+TFS +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 142 GNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 191
++ + K+ D + G+SKG+GFV+F ++ A+ ++NG+ + + + +G
Sbjct: 222 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIG 272
Score = 146 (56.5 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 47/173 (27%), Positives = 86/173 (49%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQ-VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
S++VGDL +V+D+ L++ FS+ V + +V D +T RS GYG+V + + + +A+
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 90 VLNFTPLNNKSIRIMYS--------HRDPSIRKSGT-----GNIFIKNLDKS-IDHKALH 135
+N +++++RI + + +GT G+I + +D
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSVTD 317
Query: 136 DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ N +I + KG GFVQF N+ +A+ A++KLNG +I + V
Sbjct: 318 EDLKQPFNEFG-EIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTV 369
Score = 130 (50.8 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 30/97 (30%), Positives = 55/97 (56%)
Query: 15 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYG 74
PNG G+ + T+++VG LD +VTD L F++ G+++SV++ G G
Sbjct: 290 PNGTLTRPEGD-IMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCG 342
Query: 75 YVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS 111
+V + N +A AL+ LN T + +++R+ + R+P+
Sbjct: 343 FVQFVNRPNAEEALEKLNGTVIGKQTVRLSWG-RNPA 378
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 268 (99.4 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 85/285 (29%), Positives = 140/285 (49%)
Query: 112 IRKSGTGN--IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENK 168
I+ S N I+I +L + +D LH FS G ++S KI + +GQS+ +GFV+F
Sbjct: 76 IQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTH 135
Query: 169 ESAQNAIDKLNG-MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
+A+ + NG M+ N +Q F ++ E A ++FV +L TD L+
Sbjct: 136 AAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRD 195
Query: 228 IFGE-YGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA- 284
F Y ++ A V+ D + G SK +GFV F + + ++A+ +NG R +G A
Sbjct: 196 TFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVAT 255
Query: 285 -QKKSEREQE------LKGQFEQAMKETV-DKFQG----LNLYIKNLGDSIDDEKLKELF 332
+K S EQ L G + T + G +++ L + DE+L++ F
Sbjct: 256 PKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSF 315
Query: 333 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
++FG + S K+ P+G KG GFV FS A A+ +++G +I
Sbjct: 316 NQFGEVVSVKI---PAG--KGCGFVQFSDRSSAQEAIQKLSGAII 355
Score = 225 (84.3 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 56/196 (28%), Positives = 107/196 (54%)
Query: 3 QIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVC 62
Q Q Q + Q S P + + + N+ ++++GDL + +S L+ FSQ G+V+SV++
Sbjct: 62 QHQQQQKMQQS-PTQIQSSSEDNK----TIWIGDLQQWMDESYLHSCFSQAGEVISVKII 116
Query: 63 RDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN--KSIRIMYSHRDPSIRKSGTGN- 119
R+ T +S YG+V + A A + L N T + N + R+ ++ +++ TG+
Sbjct: 117 RNKQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSD 176
Query: 120 --IFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAI 175
IF+ +L + L DTF+S + ++ K+ D + G SKG+GFV+F ++ A+
Sbjct: 177 FSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAM 236
Query: 176 DKLNGMLINDKQVFVG 191
++NG+ + + + +G
Sbjct: 237 TEMNGVYCSSRAMRIG 252
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 49/184 (26%), Positives = 87/184 (47%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 269
+++ +L + + L F + G + S ++R+ G+S+ +GFV F A K +++
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
NG + E + R + ET F ++++ +L + D L+
Sbjct: 146 NGTMMPNTE--------QPFRLNWAGFSTGEKRAETGSDF---SIFVGDLASDVTDTMLR 194
Query: 330 ELF-SEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ F S + ++ KV+ D + G SKG GFV F E SRA+ EMNG S+ + + VA
Sbjct: 195 DTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVA 254
Query: 388 QRKE 391
K+
Sbjct: 255 TPKK 258
Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 31/83 (37%), Positives = 44/83 (53%)
Query: 106 SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 165
+H S S IF+ LD + + L +F+ FG ++S KI KG GFVQF
Sbjct: 283 THGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPA-----GKGCGFVQF 337
Query: 166 ENKESAQNAIDKLNGMLINDKQV 188
++ SAQ AI KL+G +I + V
Sbjct: 338 SDRSSAQEAIQKLSGAIIGKQAV 360
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 153 (58.9 bits), Expect = 7.9e-20, Sum P(3) = 7.9e-20
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 111 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKE 169
S + +GN+FI L + L FS+FG I SC++ D +G S+GFGFV+F++
Sbjct: 92 SSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVA 151
Query: 170 SAQNAIDKLNGMLINDKQVFV 190
SAQ AI+ +NG + +K + V
Sbjct: 152 SAQYAINSMNGAKVENKTLLV 172
Score = 133 (51.9 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 28/101 (27%), Positives = 53/101 (52%)
Query: 19 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNY 78
+ S N + +L++ L T L +FS G++ S RV DL+T S G+G+V +
Sbjct: 88 STSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKF 147
Query: 79 ANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN 119
+ A A A++ +N + NK++ + +++ DP+ + N
Sbjct: 148 KDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSN 188
Score = 133 (51.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T+LYV +L + DS LY LFS G + SV++ RD +T+ GYG+V + AD+ A++
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 441
Query: 90 VLNFTPLNNKSIRIMY 105
+N + K+I + +
Sbjct: 442 SINGVQVGGKTISVSF 457
Score = 133 (51.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
NL+I L + + L+ +FS FG I SC+VM D +G+S+G GFV F A A+
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 372 MNGKMIVSKPLYVAVA 387
MNG + +K L V A
Sbjct: 160 MNGAKVENKTLLVRFA 175
Score = 129 (50.5 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 39/154 (25%), Positives = 69/154 (44%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
N+F+ L + T + L+ IF +G I S VM D G S+ FGFV F++ A A+ +
Sbjct: 100 NLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINS 159
Query: 269 LNGKKFDDREWYV------------GKAQKKSEREQELKGQFEQAMKETVDKF--QGL-- 312
+NG K +++ V + ++ + + + Q +
Sbjct: 160 MNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNNNNNNNNNSNNNNTNNIDEQKISN 219
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD 346
N++I+ L D +L ELFS +G + K++ D
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLID 253
Score = 123 (48.4 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
N++I+ L D +L ELFS +G + K++ D + S+G G V + + A A+
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKS 279
Query: 372 MNGKMIVS--KPLYVAVAQRKEERRARLQA-QFSQMR 405
+NG ++ KPL V A ++E++ + Q Q Q+R
Sbjct: 280 LNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVR 316
Score = 119 (46.9 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 175
+ N+FI+ L D L + FS++G ++ K+ D + S+G G V++ + +SA NA+
Sbjct: 218 SNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAV 277
Query: 176 DKLNGMLINDKQ 187
LNG ++ D +
Sbjct: 278 KSLNGFILQDPE 289
Score = 112 (44.5 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRALAE 371
NLY+ NL DD L LFS G I S K++RD + + +G GFV + ++ A+
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINS 442
Query: 372 MNGKMIVSKPLYVA 385
+NG + K + V+
Sbjct: 443 INGVQVGGKTISVS 456
Score = 112 (44.5 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 106 SHRDPSIRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGF 162
S P + GT N+++ NL D L+ FS G I S KI D + Q +G+GF
Sbjct: 368 SQPPPGGKNPGTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGF 427
Query: 163 VQFENKESAQNAIDKLNGMLINDKQVFV 190
V+ + + +AI+ +NG+ + K + V
Sbjct: 428 VRMVSLADSYSAINSINGVQVGGKTISV 455
Score = 91 (37.1 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAA 85
Q ++ ++++ L +QL +LFS G+V+ ++ D++T S G G V Y + A
Sbjct: 215 QKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAI 274
Query: 86 RALDVLN 92
A+ LN
Sbjct: 275 NAVKSLN 281
Score = 90 (36.7 bits), Expect = 7.9e-20, Sum P(3) = 7.9e-20
Identities = 27/102 (26%), Positives = 47/102 (46%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVE 267
NNVF++ L L ++F YG + + ++ D S+ G V + + A AV+
Sbjct: 219 NNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVK 278
Query: 268 ALNGKKFDDREW-----YVGKAQKKSEREQELKG-QFEQAMK 303
+LNG D E + +K ++ Q+L+ Q Q M+
Sbjct: 279 SLNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVRQNMR 320
Score = 85 (35.0 bits), Expect = 9.2e-18, Sum P(3) = 9.2e-18
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 268
N++V NL D L ++F G I S ++RD + + +GFV + D+ A+ +
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAINS 442
Query: 269 LNG 271
+NG
Sbjct: 443 ING 445
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 236 (88.1 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 48/163 (29%), Positives = 90/163 (55%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS-TRRSLGYGYVNYANPADAARALD 89
+LYVG LD VT+ L +F G V+SV++ D + + YG+V + +P A RA+
Sbjct: 91 ALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQ 150
Query: 90 VLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILS 146
LN ++ IR+ ++++ + K T N IF+ +L ++ + L FS+FG++
Sbjct: 151 TLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 147 CKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
++ D +G+S+G+GFV F + A+ A+ ++G + + +
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAI 253
Score = 208 (78.3 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 52/182 (28%), Positives = 91/182 (50%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKG--FGFVQFENKESAQNAIDK 177
+++ LD + L F + G+++S KI D + SKG +GFV+F++ +A+ A+
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
LNG I+ ++ V + F+ +FV +L DE L + F +G+++
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKEDTSNHFH-IFVGDLSNEVNDEVLLQAFSAFGSVSE 210
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQ 292
A VM D G+S+ +GFV F DA KA+ +++G+ R W K Q ++Q
Sbjct: 211 ARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPSISQQQ 270
Query: 293 EL 294
+
Sbjct: 271 AM 272
Score = 208 (78.3 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 57/197 (28%), Positives = 104/197 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC--FGFVNFENADDAAKAVEA 268
++V LD T++ LK+IF G + S ++ D + SK +GFV F++ A +A++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
LNG++ E V A + + +E +T + F ++++ +L + ++DE L
Sbjct: 152 LNGRRIHQSEIRVNWAYQSNTANKE----------DTSNHF---HIFVGDLSNEVNDEVL 198
Query: 329 KELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
+ FS FG+++ +VM D +G S+G GFVAF +A +AL M+G+ + S+ + A
Sbjct: 199 LQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWA 258
Query: 388 QRKEERRARLQAQFSQM 404
+K + Q + M
Sbjct: 259 NQKGQPSISQQQAMAAM 275
Score = 133 (51.9 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 32/83 (38%), Positives = 47/83 (56%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL V D L FS G V RV D+ T RS GYG+V + ADA +AL +
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 92 NFTPLNNKSIRIMYSHR--DPSI 112
+ L +++IR ++++ PSI
Sbjct: 244 DGEWLGSRAIRCNWANQKGQPSI 266
Score = 78 (32.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
Y+ NL + LF FG + ++ D +G F+ T E A+ A+ ++NG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 375 KMIVSKPL 382
+ +PL
Sbjct: 366 YNVNGRPL 373
Score = 78 (32.5 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 17/66 (25%), Positives = 34/66 (51%)
Query: 121 FIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180
++ NL + F +FG ++ ++ D +GF F++ + E+A +AI +LNG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 181 MLINDK 186
+N +
Sbjct: 366 YNVNGR 371
Score = 72 (30.4 bits), Expect = 6.9e-20, Sum P(2) = 6.9e-20
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 212 FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 271
+V NL TT D+ +F +G + + D + F F+ + ++AA A+ LNG
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD-----RGFAFIKMDTHENAASAICQLNG 365
Query: 272 KKFDDR 277
+ R
Sbjct: 366 YNVNGR 371
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 261 (96.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 76/267 (28%), Positives = 127/267 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 180 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 291
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K KS E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 292 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
K +++ + ++ +Y + + ++ +++ FS FG I +V D
Sbjct: 184 SNTKQLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD---- 237
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMI 377
KG F+ FS+ E A+ A+ +NG I
Sbjct: 238 -KGYSFIRFSSHESAAHAIVSVNGTTI 263
Score = 245 (91.3 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 74/275 (26%), Positives = 132/275 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--RETVAI 204
++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK + T
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 205 KTK---FNNV-----------FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250
TK ++ V + + T++ +++ F +G I V D K
Sbjct: 185 NTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KG 239
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
+ F+ F + + AA A+ ++NG + + Y GK
Sbjct: 240 YSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 390 K 390
K
Sbjct: 174 K 174
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 260 (96.6 bits), Expect = 2.5e-20, P = 2.5e-20
Identities = 76/267 (28%), Positives = 127/267 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A +A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 180 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 291
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K KS E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 292 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
K ++ + ++ +Y + + ++ +++ FS FG I +V D
Sbjct: 184 SNTKQLSYDDVVNQSSPS--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD---- 237
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMI 377
KG FV F++ E A+ A+ +NG I
Sbjct: 238 -KGYSFVRFNSHESAAHAIVSVNGTTI 263
Score = 247 (92.0 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 75/275 (27%), Positives = 133/275 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALAA 65
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--RETVAI 204
++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK + T
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 184
Query: 205 KTK---FNNV-----------FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250
TK +++V + + T++ +++ F +G I V D K
Sbjct: 185 NTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KG 239
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
+ FV F + + AA A+ ++NG + + Y GK
Sbjct: 240 YSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 274
Score = 169 (64.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAASALAAMN 67
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 390 K 390
K
Sbjct: 174 K 174
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 260 (96.6 bits), Expect = 4.3e-20, P = 4.3e-20
Identities = 77/274 (28%), Positives = 130/274 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 180 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 230
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 231 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 285
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 286 K-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 343
KS E K +++ + ++ +Y + + ++ +++ FS FG I +V
Sbjct: 188 APKSTYESNTKQLSYDEVVSQSSPN--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 245
Query: 344 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
D KG FV FS+ E A+ A+ +NG I
Sbjct: 246 FPD-----KGYSFVRFSSHESAAHAIVSVNGTTI 274
Score = 224 (83.9 bits), Expect = 8.6e-16, P = 8.6e-16
Identities = 76/286 (26%), Positives = 132/286 (46%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSIDHKALHD 136
+N + K +++ ++ PS +K T + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 137 TFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 196 KQE--RETVAIKTKF------------NN--VFVKNLDESTTDEDLKKIFGEYGTITSAV 239
K + T TK NN V+ + T++ +++ F +G I
Sbjct: 185 KPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 245 VFPD-----KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 190 (71.9 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 390 K 390
K
Sbjct: 185 K 185
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 268 (99.4 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 90/374 (24%), Positives = 179/374 (47%)
Query: 31 SLYVGDL----DFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAAR 86
SL+V +L D+ + + + F + L V R S++R +GYV++ + D +
Sbjct: 280 SLFVKNLTPTKDYEELRTAIKEFFGKKN--LQVSEVRIGSSKR---FGYVDFLSAEDMDK 334
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKS----GTGNIFIKNLDKSIDHKALHDTFSSFG 142
AL LN L I++ + S++++ +F+KNL + + + F
Sbjct: 335 ALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE--- 390
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
N L ++ + G SKG +++F+ + A+ A+++ G ++ + + + + K ++E+
Sbjct: 391 NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 450
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + + V NL + ++E L+++F + TS + ++ G+ K + FV F A+
Sbjct: 451 KGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAE 507
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFEQAMKETVDKFQGLNLYIKNL 319
DA +A+ + N + + R + + ++ +G F Q K L+++ L
Sbjct: 508 DAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVRGL 558
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378
+ +E L+E F G+I S +++ D +G SKG GFV FS+PE+A A M I
Sbjct: 559 SEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEID 615
Query: 379 SKPLYVAVAQRKEE 392
+ + A+ K E
Sbjct: 616 GNKVTLDFAKPKGE 629
Score = 181 (68.8 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 54/202 (26%), Positives = 100/202 (49%)
Query: 195 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 254
+K++ E A + F+ +FVKNL + E+L+ E+ + V G SK FG+V
Sbjct: 266 KKKKTEIKAPASAFS-LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYV 324
Query: 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 314
+F +A+D KA++ LNGKK E + KA+ K +++KE + L
Sbjct: 325 DFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSK------------ESLKENKKERDARTL 371
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
++KNL + ++++K +F +++ + G SKG ++ F T EA +AL E G
Sbjct: 372 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 428
Query: 375 KMIVSKPLYVAVAQRKEERRAR 396
+ + + + K ++ ++
Sbjct: 429 TEVDGRAMVIDYTGEKSQQESQ 450
Score = 155 (59.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPAD 83
G + + +L V +L + ++ L +LF + S+++ ++ + R GY +V + D
Sbjct: 453 GGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQN-NQGRPKGYAFVEFPTAED 508
Query: 84 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-----GTGN-----IFIKNLDKSIDHKA 133
A AL+ N T + ++IR+ +S PS +K G N +F++ L + +
Sbjct: 509 AKEALNSCNNTEIEGRAIRLEFS--SPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEET 566
Query: 134 LHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
L ++F G+I S +I TD +G SKGFGFV F + E A+ A + + I+ +V
Sbjct: 567 LRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 619
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 268 (99.4 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 90/374 (24%), Positives = 179/374 (47%)
Query: 31 SLYVGDL----DFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAAR 86
SL+V +L D+ + + + F + L V R S++R +GYV++ + D +
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKN--LQVSEVRIGSSKR---FGYVDFLSAEDMDK 336
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKS----GTGNIFIKNLDKSIDHKALHDTFSSFG 142
AL LN L I++ + S++++ +F+KNL + + + F
Sbjct: 337 ALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE--- 392
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
N L ++ + G SKG +++F+ + A+ A+++ G ++ + + + + K ++E+
Sbjct: 393 NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + + V NL + ++E L+++F + TS + ++ G+ K + FV F A+
Sbjct: 453 KGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAE 509
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFEQAMKETVDKFQGLNLYIKNL 319
DA +A+ + N + + R + + ++ +G F Q K L+++ L
Sbjct: 510 DAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVRGL 560
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378
+ +E L+E F G+I S +++ D +G SKG GFV FS+PE+A A M I
Sbjct: 561 SEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEID 617
Query: 379 SKPLYVAVAQRKEE 392
+ + A+ K E
Sbjct: 618 GNKVTLDFAKPKGE 631
Score = 180 (68.4 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 55/202 (27%), Positives = 101/202 (50%)
Query: 195 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 254
+K++ ET A + F+ +FVKNL + E+L+ E+ + V G SK FG+V
Sbjct: 270 KKKKTETPA--SAFS-LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYV 326
Query: 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 314
+F +A+D KA++ LNGKK E + KA+ K +++KE + L
Sbjct: 327 DFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSK------------ESLKENKKERDARTL 373
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
++KNL + ++++K +F +++ + G SKG ++ F T EA +AL E G
Sbjct: 374 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 430
Query: 375 KMIVSKPLYVAVAQRKEERRAR 396
+ + + + K ++ ++
Sbjct: 431 TEVDGRAMVIDYTGEKSQQESQ 452
Score = 155 (59.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPAD 83
G + + +L V +L + ++ L +LF + S+++ ++ + R GY +V + D
Sbjct: 455 GGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQN-NQGRPKGYAFVEFPTAED 510
Query: 84 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-----GTGN-----IFIKNLDKSIDHKA 133
A AL+ N T + ++IR+ +S PS +K G N +F++ L + +
Sbjct: 511 AKEALNSCNNTEIEGRAIRLEFS--SPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEET 568
Query: 134 LHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
L ++F G+I S +I TD +G SKGFGFV F + E A+ A + + I+ +V
Sbjct: 569 LRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 621
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 268 (99.4 bits), Expect = 5.8e-20, P = 5.8e-20
Identities = 90/374 (24%), Positives = 179/374 (47%)
Query: 31 SLYVGDL----DFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAAR 86
SL+V +L D+ + + + F + L V R S++R +GYV++ + D +
Sbjct: 282 SLFVKNLTPTKDYEELRTAIKEFFGKKN--LQVSEVRIGSSKR---FGYVDFLSAEDMDK 336
Query: 87 ALDVLNFTPLNNKSIRIMYSHRDPSIRKS----GTGNIFIKNLDKSIDHKALHDTFSSFG 142
AL LN L I++ + S++++ +F+KNL + + + F
Sbjct: 337 ALQ-LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFE--- 392
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV 202
N L ++ + G SKG +++F+ + A+ A+++ G ++ + + + + K ++E+
Sbjct: 393 NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQ 452
Query: 203 --AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
+ + + V NL + ++E L+++F + TS + ++ G+ K + FV F A+
Sbjct: 453 KGGGERESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAE 509
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSER-EQELKGQFEQAMKETVDKFQGLNLYIKNL 319
DA +A+ + N + + R + + ++ +G F Q K L+++ L
Sbjct: 510 DAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSK---------TLFVRGL 560
Query: 320 GDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378
+ +E L+E F G+I S +++ D +G SKG GFV FS+PE+A A M I
Sbjct: 561 SEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEID 617
Query: 379 SKPLYVAVAQRKEE 392
+ + A+ K E
Sbjct: 618 GNKVTLDFAKPKGE 631
Score = 180 (68.4 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 55/202 (27%), Positives = 101/202 (50%)
Query: 195 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 254
+K++ ET A + F+ +FVKNL + E+L+ E+ + V G SK FG+V
Sbjct: 270 KKKKTETPA--SAFS-LFVKNLTPTKDYEELRTAIKEFFGKKNLQVSEVRIGSSKRFGYV 326
Query: 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNL 314
+F +A+D KA++ LNGKK E + KA+ K +++KE + L
Sbjct: 327 DFLSAEDMDKALQ-LNGKKLMGLEIKLEKAKSK------------ESLKENKKERDARTL 373
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
++KNL + ++++K +F +++ + G SKG ++ F T EA +AL E G
Sbjct: 374 FVKNLPYRVTEDEMKNVFEN---ALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQG 430
Query: 375 KMIVSKPLYVAVAQRKEERRAR 396
+ + + + K ++ ++
Sbjct: 431 TEVDGRAMVIDYTGEKSQQESQ 452
Score = 155 (59.6 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 50/176 (28%), Positives = 90/176 (51%)
Query: 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPAD 83
G + + +L V +L + ++ L +LF + S+++ ++ + R GY +V + D
Sbjct: 455 GGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQN-NQGRPKGYAFVEFPTAED 510
Query: 84 AARALDVLNFTPLNNKSIRIMYSHRDPSIRKS-----GTGN-----IFIKNLDKSIDHKA 133
A AL+ N T + ++IR+ +S PS +K G N +F++ L + +
Sbjct: 511 AKEALNSCNNTEIEGRAIRLEFS--SPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEET 568
Query: 134 LHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
L ++F G+I S +I TD +G SKGFGFV F + E A+ A + + I+ +V
Sbjct: 569 LRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKV 621
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 258 (95.9 bits), Expect = 7.5e-20, P = 7.5e-20
Identities = 79/275 (28%), Positives = 131/275 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 180 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 230
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 231 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 285
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 286 K-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCK 342
KS E K + + E V++ N +Y + + ++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 343 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
V D KG FV F++ E A+ A+ +NG I
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 220 (82.5 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 75/286 (26%), Positives = 131/286 (45%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSIDHKALHD 136
+N + K +++ ++ PS +K T + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 137 TFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 196 KQE--RETVAIKTK-------FNN-------VFVKNLDESTTDEDLKKIFGEYGTITSAV 239
K + T TK N V+ + T++ +++ F +G I
Sbjct: 185 KPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 190 (71.9 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 390 K 390
K
Sbjct: 185 K 185
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 258 (95.9 bits), Expect = 7.8e-20, P = 7.8e-20
Identities = 79/275 (28%), Positives = 131/275 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 180 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 230
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 231 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 285
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 286 K-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCK 342
KS E K + + E V++ N +Y + + ++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 343 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
V D KG FV F++ E A+ A+ +NG I
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 220 (82.5 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 75/286 (26%), Positives = 131/286 (45%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSIDHKALHD 136
+N + K +++ ++ PS +K T + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 137 TFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 196 KQE--RETVAIKTK-------FNN-------VFVKNLDESTTDEDLKKIFGEYGTITSAV 239
K + T TK N V+ + T++ +++ F +G I
Sbjct: 185 KPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 190 (71.9 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 390 K 390
K
Sbjct: 185 K 185
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 257 (95.5 bits), Expect = 9.1e-20, P = 9.1e-20
Identities = 76/274 (27%), Positives = 130/274 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 180 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 230
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 123
Query: 231 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 285
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 124 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 183
Query: 286 K-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 343
KS E K +++ + ++ +Y + + ++ +++ FS FG I +V
Sbjct: 184 APKSTYESNTKQLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRV 241
Query: 344 MRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
D KG F+ FS+ E A+ A+ +NG I
Sbjct: 242 FPD-----KGYSFIRFSSHESAAHAIVSVNGTTI 270
Score = 218 (81.8 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 73/286 (25%), Positives = 132/286 (46%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 61
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSIDHKALHD 136
+N + K +++ ++ PS +K T + +F+ +L I + +
Sbjct: 62 MNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 120
Query: 137 TFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ R
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 196 KQE--RETVAIKTK---FNNV-----------FVKNLDESTTDEDLKKIFGEYGTITSAV 239
K + T TK ++ V + + T++ +++ F +G I
Sbjct: 181 KPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 240
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
V D K + F+ F + + AA A+ ++NG + + Y GK
Sbjct: 241 VFPD-----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGK 281
Score = 190 (71.9 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 120
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 390 K 390
K
Sbjct: 181 K 181
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 234 (87.4 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 52/185 (28%), Positives = 96/185 (51%)
Query: 9 QAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR 68
Q+ + P G + + +LYVG LD VT+ L +F G V +V++ D + +
Sbjct: 64 QSALMSPGGTFTRRTAPEPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAK 123
Query: 69 RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP-SIRKSGTGN---IFIKN 124
YG+V Y +P A RA+ LN ++ IR+ ++++ S K T N IF+ +
Sbjct: 124 -GYNYGFVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGD 182
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
L ++ + L FS FG++ ++ D +G+S+G+GFV F ++ A+ A+ ++G +
Sbjct: 183 LSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWL 242
Query: 184 NDKQV 188
+ +
Sbjct: 243 GSRAI 247
Score = 205 (77.2 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 52/181 (28%), Positives = 98/181 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V LD T++ L++IF G + + ++ D + K +GFV +++ A +A++ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G++ E V A + + A KE D ++++ +L + ++DE L +
Sbjct: 147 GRRVHQSEIRVNWAYQAAT----------SATKE--DTSNHFHIFVGDLSNEVNDEVLTQ 194
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
FS FG+++ +VM D +G S+G GFVAF +A +AL+ M+G+ + S+ + A +
Sbjct: 195 AFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQ 254
Query: 390 K 390
K
Sbjct: 255 K 255
Score = 200 (75.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 46/180 (25%), Positives = 89/180 (49%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ LD + L F + G++ + KI D + + +GFV++++ +A A+ LN
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQTLN 146
Query: 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 239
G ++ ++ V + T + ++FV +L DE L + F +G+++ A
Sbjct: 147 GRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEAR 206
Query: 240 VMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQEL 294
VM D G+S+ +GFV F + DA KA+ +++G+ R W K Q ++Q +
Sbjct: 207 VMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQAM 266
Score = 131 (51.2 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 8 HQAQMSGPNGVAAGASGNQFLTTS---LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD 64
HQ+++ A S + T++ ++VGDL V D L FS G V RV D
Sbjct: 151 HQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWD 210
Query: 65 LSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR--DPSI 112
+ T RS GYG+V + + +DA +AL ++ L +++IR ++++ PSI
Sbjct: 211 MKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSI 260
Score = 73 (30.8 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 189 FVGHFLRKQE---RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 245
F H ++ E +T A +T +V NL TT D+ +F +G + + D
Sbjct: 282 FPTHGMQSYEMVVNQTPAYQT---TCYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-- 336
Query: 246 GKSKCFGFVNFENADDAAKAVEALNGKKFDDR 277
+ F F+ ++ ++AA+A+ LNG + R
Sbjct: 337 ---RGFAFIKMDSHENAAQAICGLNGYNVNGR 365
Score = 70 (29.7 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
+E + +T +Q Y+ NL + LF FG + + D +G F+
Sbjct: 290 YEMVVNQT-PAYQ-TTCYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD-----RGFAFI 342
Query: 358 AFSTPEEASRALAEMNGKMIVSKPL 382
+ E A++A+ +NG + +PL
Sbjct: 343 KMDSHENAAQAICGLNGYNVNGRPL 367
Score = 70 (29.7 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 138 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186
F +FG ++ + D +GF F++ ++ E+A AI LNG +N +
Sbjct: 322 FQNFGYVVESRFQAD-----RGFAFIKMDSHENAAQAICGLNGYNVNGR 365
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 198 (74.8 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 61/213 (28%), Positives = 102/213 (47%)
Query: 97 NNKSIRIMYSHRDPSIRKSGTGN--------IFIKNLDKSIDHKALHDTF-SSFGNILSC 147
N K+ R +D + SGTG +FI N+ + +A+ D G +
Sbjct: 11 NKKANRFHPYSKD---KNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYV 67
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLN-----GMLINDKQVFVGHFLRKQERETV 202
++ D G+S+G G V+F+++E + A++ +N G +N K+ G R+ + T
Sbjct: 68 ELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRPLNIKEDPDGENARRALQRTA 127
Query: 203 AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDA 262
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A
Sbjct: 128 G--RLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEA 185
Query: 263 AKAVEALNGKKFDDREWYVGKAQKKSEREQELK 295
+A+ NG+ DR +V K KS ++ +
Sbjct: 186 VQAISMFNGQFLFDRPMHV-KMDDKSVPHEDYR 217
Score = 195 (73.7 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 51/178 (28%), Positives = 91/178 (51%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 37 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 96
Query: 268 ALNGKKFDDREWYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+N K+D G+ K + + E +A++ T + G +++ NL + +
Sbjct: 97 TMN--KYD----LSGRPLNIKEDPDGE---NARRALQRTAGRL-GSTIFVANLDFKVGWK 146
Query: 327 KLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
KLKE+FS GT+ + D G S+G G V F EA +A++ NG+ + +P++V
Sbjct: 147 KLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 204
Score = 118 (46.6 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 113 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 528 RIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 586
Query: 172 QNAIDKLNGMLINDKQVFV 190
+ A +NG+ I+ +++ V
Sbjct: 587 EKACRIMNGIKISGREIDV 605
Score = 116 (45.9 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 353
L G +++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 517 LSGPMGSGIRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 574
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
G V F +PE A +A MNG I + + V
Sbjct: 575 CGTVRFDSPESAEKACRIMNGIKISGREIDV 605
Score = 115 (45.5 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
I +K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A
Sbjct: 529 IGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAE 587
Query: 264 KAVEALNGKKFDDRE 278
KA +NG K RE
Sbjct: 588 KACRIMNGIKISGRE 602
Score = 76 (31.8 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
L ++++V +LDF V +L ++FS G V + D +S G G V + +A +A
Sbjct: 130 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKED-KDGKSRGMGTVTFEQAIEAVQA 188
Query: 88 LDVLN 92
+ + N
Sbjct: 189 ISMFN 193
Score = 38 (18.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 468 GAGSMLPVPVDMGAGIPRRDASVGQPMP 495
G G M V MG G+ R +S + P
Sbjct: 473 GMGGMNSVTGGMGMGLDRMSSSFDRMGP 500
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 256 (95.2 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 79/275 (28%), Positives = 131/275 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 180 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 230
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 231 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 285
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 286 K-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCK 342
KS E K + + E V++ N +Y + + ++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 343 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
V D KG FV F++ E A+ A+ +NG I
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 220 (82.5 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 75/286 (26%), Positives = 131/286 (45%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAA 65
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSIDHKALHD 136
+N + K +++ ++ PS +K T + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 137 TFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 196 KQE--RETVAIKTK-------FNN-------VFVKNLDESTTDEDLKKIFGEYGTITSAV 239
K + T TK N V+ + T++ +++ F +G I
Sbjct: 185 KPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 188 (71.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 390 K 390
K
Sbjct: 185 K 185
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 256 (95.2 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 79/275 (28%), Positives = 131/275 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 180 GMLINDKQVFVGHFLR--KQERET---VAIKTKFN----NVFVKNLDESTTDEDLKKIFG 230
G I K+V V Q+++T + T+ + +VFV +L T ED+K F
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFA 127
Query: 231 EYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQ 285
+G I+ A V++D GKSK +GFV+F N DA A++ + G+ R+ W K
Sbjct: 128 PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 187
Query: 286 K-KSEREQELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCK 342
KS E K + + E V++ N +Y + + ++ +++ FS FG I +
Sbjct: 188 APKSTYESNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 343 VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
V D KG FV F++ E A+ A+ +NG I
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTI 274
Score = 220 (82.5 bits), Expect = 2.7e-15, P = 2.7e-15
Identities = 75/286 (26%), Positives = 131/286 (45%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAA 65
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------IFIKNLDKSIDHKALHD 136
+N + K +++ ++ PS +K T + +F+ +L I + +
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 124
Query: 137 TFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195
F+ FG I ++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 196 KQE--RETVAIKTK-------FNN-------VFVKNLDESTTDEDLKKIFGEYGTITSAV 239
K + T TK N V+ + T++ +++ F +G I
Sbjct: 185 KPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIR 244
Query: 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
V D K + FV F + + AA A+ ++NG + + Y GK
Sbjct: 245 VFPD-----KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGK 285
Score = 188 (71.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 49/181 (27%), Positives = 91/181 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHAAAALAAMN 67
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++++ + + + D F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHF---HVFVGDLSPEITTEDIKA 124
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 184
Query: 390 K 390
K
Sbjct: 185 K 185
>POMBASE|SPAC343.07 [details] [associations]
symbol:mug28 "RNA-binding protein Mug28" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005619 "ascospore wall" evidence=IDA] [GO:0005628 "prospore
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0031321
"ascospore-type prospore assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC343.07 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005628 GO:GO:0005619 eggNOG:COG0724
GO:GO:0031321 PIR:T38656 RefSeq:NP_593427.1 HSSP:Q60900
ProteinModelPortal:Q9UT83 STRING:Q9UT83 EnsemblFungi:SPAC343.07.1
GeneID:2543165 KEGG:spo:SPAC343.07 OMA:YTHIVER OrthoDB:EOG447K4G
NextBio:20804191 Uniprot:Q9UT83
Length = 609
Score = 211 (79.3 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 47/97 (48%), Positives = 67/97 (69%)
Query: 313 NLYIKNLGDSI--DDEKLKELFSEFGTITSCKVMRDPSG-ISKGSGFVAFSTPEEASRAL 369
NL++KNL D+I + ++L+ELFS+FG I SC + PS ISKG GFV+FS P EA +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 370 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 406
+NG + K L+V A+++E+R+ RL A FSQ P
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYP 516
Score = 163 (62.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 35/85 (41%), Positives = 56/85 (65%)
Query: 119 NIFIKNLDKSI--DHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAI 175
N+F+KNLD +I + + L + FS FG I SC +A+ S + SKG+GFV F + A AI
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 176 DKLNGMLINDKQVFVGHFLRKQERE 200
+ LNG+L K++FV + ++++R+
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRK 504
Score = 144 (55.7 bits), Expect = 4.6e-12, Sum P(2) = 4.6e-12
Identities = 32/100 (32%), Positives = 57/100 (57%)
Query: 210 NVFVKNLDESTTD--EDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAV 266
N+FVKNLD++ + L+++F ++G I S + + SK +GFV+F + +A +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETV 306
LNG F + +V A+K+ +R++ L F Q+ V
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQSYPPVV 519
Score = 123 (48.4 bits), Expect = 0.00036, P = 0.00036
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 31 SLYVGDLDFNVTDS--QLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+L+V +LD N+ + QL +LFS+ G++ S + ST S GYG+V++++P +A +A+
Sbjct: 420 NLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAI 479
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIF 121
+ LN K + + Y+ + RK IF
Sbjct: 480 NTLNGVLFGKKRLFVNYAEKRED-RKKRLSAIF 511
Score = 100 (40.3 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 28/69 (40%), Positives = 37/69 (53%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGN-----ILSCKI--ATDGSGQSKGFGFVQFENKESA 171
+I++ NL + LH+ F FGN +LS K +TD + F F+ FENK SA
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTL-FAFITFENKCSA 79
Query: 172 QNAIDKLNG 180
NAI LNG
Sbjct: 80 DNAIASLNG 88
Score = 83 (34.3 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 24/106 (22%), Positives = 49/106 (46%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQ-----VLSVRVCRDLSTRRSLGYGYVNYANPADAA 85
S+YVG+L S L++LF G +LS + + ++ + ++ + N A
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 86 RALDVLNFTPLNNKSIRIMYSH---RDPSIRKSGTGNIFIKNLDKS 128
A+ LN + ++++ Y+H R + ++G I N +K+
Sbjct: 81 NAIASLNGSSFQGNTLKVEYTHIVERYKNKLENGVDQIHHSNNEKA 126
Score = 48 (22.0 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
Identities = 18/73 (24%), Positives = 30/73 (41%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
I I NL + L++ FS+ G+IL I + + V ES I+K +
Sbjct: 272 IGILNLPLKVSPVELYNEFSNHGHILGVAINQSINEDMTHYAEVAVSTYESCIEIIEKFH 331
Query: 180 GMLINDK--QVFV 190
+ Q+F+
Sbjct: 332 AIAYEGSILQLFI 344
Score = 46 (21.3 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 26 QFL--TTSLYV-G--DLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS 66
QFL S++V G +L V+ +LY+ FS G +L V + + ++
Sbjct: 261 QFLYDNPSIFVIGILNLPLKVSPVELYNEFSNHGHILGVAINQSIN 306
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 252 (93.8 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 163
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 221
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 222 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 278
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 279 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 202 (76.2 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 64/233 (27%), Positives = 108/233 (46%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 189 FVGHFLRK-----QERETVAIKTKFNNVF----VKN-------LDESTTDEDLKKIFGEY 232
RK +ET + +F +V KN + TD+ +++ F +
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 145 (56.1 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS T K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ FV+F ESA +AI +NG I
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 252 (93.8 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 163
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 221
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 222 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 278
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 279 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 202 (76.2 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 64/233 (27%), Positives = 108/233 (46%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 189 FVGHFLRK-----QERETVAIKTKFNNVF----VKN-------LDESTTDEDLKKIFGEY 232
RK +ET + +F +V KN + TD+ +++ F +
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 145 (56.1 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS T K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ FV+F ESA +AI +NG I
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>ZFIN|ZDB-GENE-031125-3 [details] [associations]
symbol:rbm19 "RNA binding motif protein 19"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0048546 "digestive
tract morphogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-031125-3 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048546 HOGENOM:HOG000211156 HOVERGEN:HBG055637
EMBL:AY648773 IPI:IPI00654470 UniGene:Dr.79791
ProteinModelPortal:Q6DRI6 SMR:Q6DRI6 STRING:Q6DRI6 PRIDE:Q6DRI6
InParanoid:Q6DRI6 Bgee:Q6DRI6 Uniprot:Q6DRI6
Length = 927
Score = 185 (70.2 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 52/164 (31%), Positives = 90/164 (54%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIAT--DGSGQ--SKGFGFVQFENKESAQNAI 175
+FIKNL+ + L TFS G + SC I+ D +G+ S G+GFVQ++ E+AQ A+
Sbjct: 704 LFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQKAM 763
Query: 176 DKLNGMLINDKQVFV---------GHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 226
+L +++ Q+ V G K++++T A K + + V+N+ T ++L+
Sbjct: 764 RQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQT-ARKQTTSKILVRNIPFQATVKELR 822
Query: 227 KIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 269
++F +G + + + + G G S + FGF++F DA KA AL
Sbjct: 823 ELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 175 (66.7 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
Identities = 52/171 (30%), Positives = 90/171 (52%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM--RDGDGK--SKCFGFVNFENADDAAK 264
+ +F+KNL+ T++E L+K F + G + S + RD GK S +GFV ++ + A K
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 265 AVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAM--KETVDKFQGLNLYIKNLGDS 322
A+ L D+ + V K SERE +K QA K+T K + ++N+
Sbjct: 762 AMRQLQHCTVDEHQLEV----KISERE--VKSGVAQAKRKKQTARKQTTSKILVRNIPFQ 815
Query: 323 IDDEKLKELFSEFGTITSCKVMRDPSGIS-KGSGFVAFSTPEEASRALAEM 372
++L+ELF FG + + ++ + G S +G GF+ F T ++A +A + +
Sbjct: 816 ATVKELRELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 166 (63.5 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 45/165 (27%), Positives = 80/165 (48%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVC--RDLSTRR-SLGYGYVNYANPADAAR 86
++L++ +L+F ++ L FS+ G V S + RD + + S+GYG+V Y P A +
Sbjct: 702 STLFIKNLNFITSEETLQKTFSKCGVVKSCTISKKRDKAGKLLSMGYGFVQYKTPEAAQK 761
Query: 87 ALDVLNFTPLNNKSIRIMYSHRD------------PSIRKSGTGNIFIKNLDKSIDHKAL 134
A+ L ++ + + S R+ + RK T I ++N+ K L
Sbjct: 762 AMRQLQHCTVDEHQLEVKISEREVKSGVAQAKRKKQTARKQTTSKILVRNIPFQATVKEL 821
Query: 135 HDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKL 178
+ F +FG + + ++ G G S +GFGF+ F K+ A+ A L
Sbjct: 822 RELFCTFGELKTVRLPKKGIGGSHRGFGFIDFLTKQDAKKAFSAL 866
Score = 140 (54.3 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 33/111 (29%), Positives = 61/111 (54%)
Query: 285 QKKSEREQELKGQFEQAMKETVDKF-QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKV 343
+K + + ++ + E+ +E D+ G L+IKNL +E L++ FS+ G + SC +
Sbjct: 674 EKSAVKNDSVQNEEEEEEEEEDDQILPGSTLFIKNLNFITSEETLQKTFSKCGVVKSCTI 733
Query: 344 M--RDPSG--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390
RD +G +S G GFV + TPE A +A+ ++ + L V +++R+
Sbjct: 734 SKKRDKAGKLLSMGYGFVQYKTPEAAQKAMRQLQHCTVDEHQLEVKISERE 784
Score = 140 (54.3 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 45/207 (21%), Positives = 98/207 (47%)
Query: 195 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 254
+K R + T+F V ++ + ++ +K+ + ++ DG++ + +V
Sbjct: 277 QKSTRPAIEPTTEFT-VKLRGAPFNVKEQQVKEFMMPLKPVAIRFA-KNSDGRNSGYVYV 334
Query: 255 NFENADDAAKAV----EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMK---ETVD 307
+ + + +A+ + + G+ + K ++S + E++ F + +K E D
Sbjct: 335 DLRSEAEVERALRLDKDYMGGRYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEED 394
Query: 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEAS 366
+ L+I+N+ + +E LKELFS+ G ++ D + KG FV + PE A
Sbjct: 395 VAESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAV 454
Query: 367 RALAEMNGKMIVSKPLYVAVAQRKEER 393
ALA+++G + L+V ++ K+E+
Sbjct: 455 SALAQLDGHTFQGRVLHVMASRLKKEK 481
Score = 124 (48.7 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ + VKNL ++ +K+F ++GT+T + DGK + FGFV F+ +DA KA++
Sbjct: 2 SRLIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKH 61
Query: 269 LNGKKFDD 276
N K F D
Sbjct: 62 FN-KSFVD 68
Score = 120 (47.3 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 30/106 (28%), Positives = 55/106 (51%)
Query: 189 FVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGK 247
FV +E E VA + +F++N+ + T+EDLK++F ++G ++ + D K
Sbjct: 382 FVRELKDDEEEEDVA---ESGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKK 438
Query: 248 SKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 293
K F FV + ++A A+ L+G F R +V ++ K E+ +
Sbjct: 439 PKGFAFVTYMIPENAVSALAQLDGHTFQGRVLHVMASRLKKEKADQ 484
Score = 116 (45.9 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 59/276 (21%), Positives = 111/276 (40%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAI 175
+G +FI+N+ + + L + FS G + D + + KGF FV + E+A +A+
Sbjct: 398 SGRLFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSAL 457
Query: 176 DKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDE-----STTDEDLKKIFG 230
+L+G + + V K+E+ ++ + + D S + + +F
Sbjct: 458 AQLDGHTFQGRVLHVMASRLKKEKADQGPDAPGSSSYKRKKDAKDKAASGSSHNWNTLFL 517
Query: 231 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290
+ A+ + KS+ ++ D + AV +G+ Q E
Sbjct: 518 GTSAVADAIAEKYNTTKSQVL-----DHESDGSLAVRMA-----------LGETQIVQET 561
Query: 291 EQEL--KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 348
Q L G + + + + +KNL + L+ LFS G++ +V+ PS
Sbjct: 562 RQFLLDNGVSLDSFSQASGERSKCVILVKNLPSGVQVADLEALFSPHGSLG--RVLLPPS 619
Query: 349 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
G++ V F P EA RA ++ PLY+
Sbjct: 620 GLT---AIVEFLEPTEAKRAFMKLAYTKFQHVPLYL 652
Score = 103 (41.3 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+ +KNL + F+ FG + C + G+ + FGFV F+ +E AQ A+ N
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRKFGFVGFKTEEDAQKALKHFN 63
Query: 180 GMLINDKQVFV 190
++ +V V
Sbjct: 64 KSFVDTSRVTV 74
Score = 86 (35.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L++ ++ + T+ L +LFS+ G + V D T++ G+ +V Y P +A AL L
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460
Query: 92 NFTPLNNKSIRIMYS 106
+ + + +M S
Sbjct: 461 DGHTFQGRVLHVMAS 475
Score = 65 (27.9 bits), Expect = 2.4e-15, Sum P(3) = 2.4e-15
Identities = 25/103 (24%), Positives = 48/103 (46%)
Query: 39 FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN 98
FNV + Q+ + + V ++R ++ R S GY YV+ + A+ RAL L+ +
Sbjct: 299 FNVKEQQVKEFMMPLKPV-AIRFAKNSDGRNS-GYVYVDLRSEAEVERALR-LDKDYMGG 355
Query: 99 KSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI-DHKALHDTFSS 140
+ I + ++ + R+S + KN + + D + D S
Sbjct: 356 RYIEVFRANNFKNDRRSAKRSEMEKNFVRELKDDEEEEDVAES 398
Score = 53 (23.7 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 20/109 (18%), Positives = 47/109 (43%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVL--SVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
L V +L + + + +F+ G + +++ +D R+ +G+V + DA +AL
Sbjct: 4 LIVKNLPNGMKEDRFRKMFADFGTLTDCALKFTKDGKFRK---FGFVGFKTEEDAQKALK 60
Query: 90 VLN--FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHD 136
N F + ++ + DP+ + + + + K + K H+
Sbjct: 61 HFNKSFVDTSRVTVELCTDFGDPNKARPWSKHTRQPSSKKDTEEKKTHE 109
Score = 53 (23.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 277 REWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 333
R W Q S+++ E K EQ KE + LN+ LGD DE +E +
Sbjct: 87 RPWSKHTRQPSSKKDTEEKKTHEQGEKEKKKPKKILNV----LGDLEKDESFQEFLA 139
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 253 (94.1 bits), Expect = 3.4e-19, P = 3.4e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 163
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 221
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 125
Query: 222 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 278
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 126 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 185
Query: 279 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 186 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 243
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 244 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 281
Score = 202 (76.2 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 64/233 (27%), Positives = 107/233 (45%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 124
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 125 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 184
Query: 189 FVGHFLRK-------QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEY 232
RK QE T ++ + N KN + TD+ +++ F +
Sbjct: 185 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 244
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 245 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 292
Score = 145 (56.1 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 68 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 113
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 114 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 173
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 174 MGGQWLGGRQIRTNWATRK 192
Score = 144 (55.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS N K L + ++ + + G I S
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQENN-TKQLRFEDVVNQSSPKNCTVYCGGIASGLT 233
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ FV+F ESA +AI +NG I
Sbjct: 234 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 281
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 253 (94.1 bits), Expect = 3.5e-19, P = 3.5e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 163
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 221
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 222 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 278
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 279 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 202 (76.2 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 64/233 (27%), Positives = 107/233 (45%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 189 FVGHFLRK-------QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEY 232
RK QE T ++ + N KN + TD+ +++ F +
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 144 (55.7 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS N K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENN-TKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ FV+F ESA +AI +NG I
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 253 (94.1 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 163
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 221
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 222 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 278
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 279 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 202 (76.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 64/233 (27%), Positives = 107/233 (45%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 189 FVGHFLRK-------QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEY 232
RK QE T ++ + N KN + TD+ +++ F +
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 144 (55.7 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS N K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENN-TKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ FV+F ESA +AI +NG I
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 253 (94.1 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 163
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 221
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 222 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 278
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 279 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 202 (76.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 64/233 (27%), Positives = 107/233 (45%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 189 FVGHFLRK-------QERETVAIKTK--FNNVFVKN-------LDESTTDEDLKKIFGEY 232
RK QE T ++ + N KN + TD+ +++ F +
Sbjct: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 144 (55.7 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS N K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENN-TKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ FV+F ESA +AI +NG I
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 252 (93.8 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 163
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 221
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 222 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 278
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 279 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 202 (76.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 64/233 (27%), Positives = 108/233 (46%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 189 FVGHFLRK-----QERETVAIKTKFNNVF----VKN-------LDESTTDEDLKKIFGEY 232
RK +ET + +F +V KN + TD+ +++ F +
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS T K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ FV+F ESA +AI +NG I
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 252 (93.8 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 84/283 (29%), Positives = 129/283 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-----GQSKGFG-----------FV 163
+++ NL + + + FS G SCK+ T+ S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTT 221
+F A A+ +NG I K+V V Q+++T F+ VFV +L T
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEIT 126
Query: 222 DEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE-- 278
ED+K F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
Query: 279 --WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
W K KS +E K +FE + ++ K +Y + + D+ +++ FS
Sbjct: 187 TNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
FG I +V + KG FV FST E A+ A+ +NG I
Sbjct: 245 FGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Score = 202 (76.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 64/233 (27%), Positives = 108/233 (46%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 125
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ + F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
Query: 189 FVGHFLRK-----QERETVAIKTKFNNVF----VKN-------LDESTTDEDLKKIFGEY 232
RK +ET + +F +V KN + TD+ +++ F +
Sbjct: 186 RTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
G I V + K + FV F + AA A+ ++NG + + Y GK
Sbjct: 246 GQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 293
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 43/139 (30%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 114
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I E +K F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 175 MGGQWLGGRQIRTNWATRK 193
Score = 145 (56.1 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS T K L + ++ + + G I S
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKS-TQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ FV+F ESA +AI +NG I
Sbjct: 235 DQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI 282
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 235 (87.8 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 71/249 (28%), Positives = 114/249 (45%)
Query: 143 NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV-FVGHFLRKQERET 201
N++S K T S QS+ F + + L G + F+ + + + E +
Sbjct: 7 NVVSIK-PTIFSFQSESFTPLHTRVNVFSSKPFPSLAGTFSRSSRTRFIPYAVTETEEKP 65
Query: 202 VAIKTKFN---NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFE 257
A+ V++ N+ + T+E L K+ E+G + VM D G+S+ FGF +
Sbjct: 66 AALDPSSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMK 125
Query: 258 NADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 317
+ +DA VE LNG + RE V +K +L + VD +Y+
Sbjct: 126 SVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLS-VLQSEDSAFVDS--PYKVYVG 182
Query: 318 NLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISK--GSGFVAFSTPEEASRALAEMNGK 375
NL ++ E L+ LFSE G + S KV R P G SK G GFV FS+ E+ A+ +N
Sbjct: 183 NLAKTVTKEMLENLFSEKGKVVSAKVSRVP-GTSKSTGFGFVTFSSEEDVEAAIVALNNS 241
Query: 376 MIVSKPLYV 384
++ + + V
Sbjct: 242 LLEGQKIRV 250
Score = 188 (71.2 bits), Expect = 8.2e-14, P = 8.2e-14
Identities = 53/189 (28%), Positives = 92/189 (48%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFEN 167
DPS ++I N+ +++ ++ L G + ++ D SG+S+ FGF ++
Sbjct: 69 DPS--SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKS 126
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRK-----------QERETVAIKTKFNNVFVKNL 216
E A ++KLNG + +++ V + K Q ++ + + + V+V NL
Sbjct: 127 VEDANAVVEKLNGNTVEGREIKV-NITEKPIASSPDLSVLQSEDSAFVDSPYK-VYVGNL 184
Query: 217 DESTTDEDLKKIFGEYGTITSAVVMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275
++ T E L+ +F E G + SA V R G KS FGFV F + +D A+ ALN +
Sbjct: 185 AKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLE 244
Query: 276 DREWYVGKA 284
++ V KA
Sbjct: 245 GQKIRVNKA 253
Score = 177 (67.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 47/173 (27%), Positives = 88/173 (50%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
+Y+G++ VT+ QL L + G V V+V D + RS +G+ + DA ++ L
Sbjct: 78 VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKL 137
Query: 92 NFTPLNNKSIRIMYSHR------DPSIRKSGTG-------NIFIKNLDKSIDHKALHDTF 138
N + + I++ + + D S+ +S +++ NL K++ + L + F
Sbjct: 138 NGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLF 197
Query: 139 SSFGNILSCKIA-TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
S G ++S K++ G+ +S GFGFV F ++E + AI LN L+ +++ V
Sbjct: 198 SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
Score = 127 (49.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/103 (29%), Positives = 56/103 (54%)
Query: 3 QIQVQHQAQMSGPNGVAAGASGNQFLTT--SLYVGDLDFNVTDSQLYDLFSQVGQVLSVR 60
++ + + S P+ + + F+ + +YVG+L VT L +LFS+ G+V+S +
Sbjct: 148 KVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAK 207
Query: 61 VCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103
V R T +S G+G+V +++ D A+ LN + L + IR+
Sbjct: 208 VSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRV 250
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 233 (87.1 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 76/280 (27%), Positives = 127/280 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 180 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 68 GRKIMGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKAAFAPFGRISD 123
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 291
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K KS E
Sbjct: 124 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 183
Query: 292 QELKGQFEQAMKETVDKFQGLN--LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-- 347
K + + E V++ N +Y + + ++ +++ FS FG I +V D
Sbjct: 184 SNTK---QLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGY 240
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
S + + + P + NG M+ ++P VA
Sbjct: 241 SFVRQTQSSAPWMGPNYGVQPPQGQNGSMLPNQPSGYRVA 280
Score = 219 (82.2 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 53/170 (31%), Positives = 91/170 (53%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I
Sbjct: 66 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196
++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 170 (64.9 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 67
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 68 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 113
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 173
Query: 390 K 390
K
Sbjct: 174 K 174
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKS 115
L + IR ++ R P KS
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKS 180
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 209 (78.6 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 59/188 (31%), Positives = 105/188 (55%)
Query: 9 QAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD-LST 67
Q G A GN+ TT L++G+L+ + ++ + +L+ Q+G+ ++V++ RD S
Sbjct: 45 QGPAPGEGAPAVAQQGNEGKTT-LWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSG 103
Query: 68 RRSLGYGYVNYANPADAARALDVLNFTPL--NNKSIRIMYSH----RDPSIRKSGTG-NI 120
R + GY +V++A+PA AA+AL LN TP+ N+ ++ ++ D S G +I
Sbjct: 104 RSNAGYCFVDFASPAAAAKALS-LNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSI 162
Query: 121 FIKNLDKSIDHKALHDTFSS-FGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 178
F+ +L ++ L F S F + S KI TD SG S+G+GFV+F ++ Q A+ ++
Sbjct: 163 FVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEM 222
Query: 179 NGMLINDK 186
G+ ++
Sbjct: 223 QGVYCGNR 230
Score = 153 (58.9 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 50/180 (27%), Positives = 91/180 (50%)
Query: 218 ESTTDED-LKKIFGEYGTITSAVVMRDG-DGKSKC-FGFVNFENADDAAKAVEALNGKKF 274
E DE+ ++ ++ + G + ++RD G+S + FV+F + AAKA+ +LNG
Sbjct: 73 EPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL-SLNGTPM 131
Query: 275 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF-S 333
+ + + G ++ D+ ++++ +LG +++ L LF S
Sbjct: 132 PN-------TNRLFKLNWATGGGLADRSRD--DRGPEYSIFVGDLGPEVNEYVLVSLFQS 182
Query: 334 EFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
F + S K+M DP SG+S+G GFV FS + RAL+EM G ++P+ ++ A K +
Sbjct: 183 RFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPKNK 242
Score = 96 (38.9 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 27/92 (29%), Positives = 45/92 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLF-SQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
S++VGDL V + L LF S+ S ++ D + S GYG+V +++ D RAL
Sbjct: 161 SIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALS 220
Query: 90 VLNFTPLNNKSIRIMYS---HRDPSIRKSGTG 118
+ N+ +RI + ++ P + G G
Sbjct: 221 EMQGVYCGNRPMRISTATPKNKGPGVVPGGMG 252
Score = 85 (35.0 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 300 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 359
Q M + D +++ L + +++L+ F FG IT K+ P G KG GFV F
Sbjct: 275 QPMNQFTDP-NNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKI---PPG--KGCGFVQF 328
Query: 360 STPEEASRALAEMNG 374
A A+ +M G
Sbjct: 329 VQRHAAEMAINQMQG 343
Score = 85 (35.0 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+F+ L + L F FG I KI KG GFVQF + +A+ AI+++
Sbjct: 288 VFVGGLSGYVTEDELRSFFQGFGEITYVKIPP-----GKGCGFVQFVQRHAAEMAINQMQ 342
Query: 180 GMLINDKQV 188
G I + +V
Sbjct: 343 GYPIGNSRV 351
Score = 68 (29.0 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 209 NN--VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
NN VFV L T+++L+ F +G IT V + G G C GFV F A A+
Sbjct: 284 NNTTVFVGGLSGYVTEDELRSFFQGFGEITY-VKIPPGKG---C-GFVQFVQRHAAEMAI 338
Query: 267 EALNG 271
+ G
Sbjct: 339 NQMQG 343
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 249 (92.7 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 53/167 (31%), Positives = 92/167 (55%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
++YVG+LD ++ ++++ +Q+G V+++ + D +R GYG+V + P A A
Sbjct: 13 TVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARA 72
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KI 149
LN + K IR+ + D +F+ NLD +D K L DTFS FG +++ +
Sbjct: 73 LNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQLVTPPNV 132
Query: 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196
D + SKG+GFV F++ E++ A D +NG + KQ+ V + +K
Sbjct: 133 VRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKK 179
Score = 188 (71.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 56/194 (28%), Positives = 95/194 (48%)
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAA 263
+ K V+V NLDE + + ++ + G + + + D ++ + +GFV F+ + A
Sbjct: 8 QNKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESAD 67
Query: 264 KAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI 323
A ALNG + + V KA ++ E+ G L++ NL +
Sbjct: 68 YAARALNGIRVFGKVIRVNKASADKQKTAEI----------------GAELFVNNLDPQV 111
Query: 324 DDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382
D++ L + FS FG +T V+RD + ISKG GFV F + E + A MNG+ ++SK +
Sbjct: 112 DEKILFDTFSRFGQLVTPPNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQI 171
Query: 383 YVAVAQRKEERRAR 396
V A +K+ + R
Sbjct: 172 TVEYAYKKDGKGER 185
Score = 181 (68.8 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 48/185 (25%), Positives = 94/185 (50%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQS-KGFGFVQFENKESAQNAIDKL 178
+++ NLD+ + + + G +++ + D ++ +G+GFV+F+ ESA A L
Sbjct: 14 VYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESADYAARAL 73
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT-ITS 237
NG+ + K + V +++T I + +FV NLD ++ L F +G +T
Sbjct: 74 NGIRVFGKVIRVNK-ASADKQKTAEIGAE---LFVNNLDPQVDEKILFDTFSRFGQLVTP 129
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+RD + SK +GFVNF++ + + A + +NG+ ++ V A KK + + +
Sbjct: 130 PNVVRDANNISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKGERHGDE 189
Query: 298 FEQAM 302
E+ +
Sbjct: 190 AERKL 194
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 231 (86.4 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 48/75 (64%), Positives = 60/75 (80%)
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388
KE FS FGTITS KVM + G SKG GFV FS+PEEA++A+ EMNG+++ +KPLYVA+AQ
Sbjct: 3 KE-FSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 389 RKEERRARLQAQFSQ 403
RKEER+A L Q+ Q
Sbjct: 61 RKEERQAHLTNQYMQ 75
Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 36/77 (46%), Positives = 49/77 (63%)
Query: 226 KKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285
+K F +GTITSA VM +G G+SK FGFV F + ++A KAV +NG+ + YV AQ
Sbjct: 2 RKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 60
Query: 286 KKSEREQELKGQFEQAM 302
+K ER+ L Q+ Q M
Sbjct: 61 RKEERQAHLTNQYMQRM 77
Score = 139 (54.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 138 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197
FS FG I S K+ +G G+SKGFGFV F + E A A+ ++NG ++ K ++V RK+
Sbjct: 5 FSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 63
Query: 198 ERE 200
ER+
Sbjct: 64 ERQ 66
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 246 (91.7 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 72/264 (27%), Positives = 125/264 (47%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + F G SCK+ D +G + FV+F A ++ +N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 180 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
G I K+V V Q+++T F+ VFV +L T +D++ F +G I+
Sbjct: 69 GRKIMGKEVKVNWATSPSSQKKDT---SNHFH-VFVGDLSPEITTDDIRAAFAPFGRISD 124
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 291
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K K+ E
Sbjct: 125 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYE 184
Query: 292 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
K F++ + ++ +Y + + ++ +++ FS FG I +V D
Sbjct: 185 TNTKHLSFDEVVNQSSPS--NCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD---- 238
Query: 351 SKGSGFVAFSTPEEASRALAEMNG 374
KG FV F++ E A+ A+ +NG
Sbjct: 239 -KGYSFVRFNSHESAAHAIVSVNG 261
Score = 244 (91.0 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 75/275 (27%), Positives = 130/275 (47%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LF Q+G S ++ D T + Y +V + AA +L
Sbjct: 9 TLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLAA 66
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N + K +++ ++ PS +K T N +F+ +L I + F+ FG I
Sbjct: 67 MNGRKIMGKEVKVNWA-TSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRISDA 125
Query: 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE--RETVAI 204
++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK + T
Sbjct: 126 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKATYET 185
Query: 205 KTK---FNNV-----------FVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250
TK F+ V + + T++ +++ F +G I V D K
Sbjct: 186 NTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPD-----KG 240
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK 283
+ FV F + + AA A+ ++NG + + Y GK
Sbjct: 241 YSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGK 275
Score = 167 (63.8 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 49/181 (27%), Positives = 90/181 (49%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++FG+ G S ++ D G + FV F AA ++ A+N
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDP-YCFVEFFEHRHAAASLAAMN 68
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++ K+T + F ++++ +L I + ++
Sbjct: 69 GRKIMGKEVKVNWATSPSSQK-----------KDTSNHF---HVFVGDLSPEITTDDIRA 114
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 115 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 174
Query: 390 K 390
K
Sbjct: 175 K 175
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 228 (85.3 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 74/279 (26%), Positives = 126/279 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + + + FS G +CK+ D +G + FV+F A A+ +N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 180 GMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
G I K+V V Q+++T F+ VFV +L T ED+K F +G I+
Sbjct: 64 GRKIMGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPEITTEDIKAAFAPFGRISD 119
Query: 238 AVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYVGKAQK-KSERE 291
A V++D GKSK +GFV+F N DA A++ + G+ R+ W K KS E
Sbjct: 120 ARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 179
Query: 292 QELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--S 348
K +++ + ++ +Y + + ++ +++ FS FG I +V D S
Sbjct: 180 SNTKQLSYDEVVSQSSPG--NCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 237
Query: 349 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387
I + + P + NG M+ ++P VA
Sbjct: 238 FIRQTQSSAPWMGPNYSVPPPQGQNGGMLPNQPAGYRVA 276
Score = 219 (82.2 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 53/170 (31%), Positives = 91/170 (53%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+L +VT++ + LFSQ+G + ++ D T + Y +V + AA AL
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 61
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N + K +++ ++ PS +K T N +F+ +L I + + F+ FG I
Sbjct: 62 MNGRKIMGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 120
Query: 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196
++ D +G+SKG+GFV F NK A+NAI ++ G + +Q+ RK
Sbjct: 121 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 170
Score = 170 (64.9 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 50/181 (27%), Positives = 89/181 (49%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NL T+ + ++F + G + ++ D G + FV F AA A+ A+N
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAAMN 63
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G+K +E V A S ++ K+T + F ++++ +L I E +K
Sbjct: 64 GRKIMGKEVKVNWATTPSSQK-----------KDTSNHF---HVFVGDLSPEITTEDIKA 109
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I+ +V++D +G SKG GFV+F +A A+ +M G+ + + + A R
Sbjct: 110 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 169
Query: 390 K 390
K
Sbjct: 170 K 170
Score = 129 (50.5 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKS 115
L + IR ++ R P KS
Sbjct: 153 GGQWLGGRQIRTNWATRKPPAPKS 176
Score = 64 (27.6 bits), Expect = 6.7e-08, Sum P(2) = 6.7e-08
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 109 DPSIRKSGTGN--IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFE 166
D + +S GN ++ + + + + TFS FG I+ ++ D KG+ F++ +
Sbjct: 188 DEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD-----KGYSFIR-Q 241
Query: 167 NKESA 171
+ SA
Sbjct: 242 TQSSA 246
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 137 (53.3 bits), Expect = 3.9e-18, Sum P(3) = 3.9e-18
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+FV NLD + LK++FG GT+ A V D DGKS+ G V FE +A +A+ N
Sbjct: 214 IFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFN 273
Query: 271 GKKFDDREWYVGKAQKKS 288
G+ DR+ +V K KS
Sbjct: 274 GQMLFDRQMHV-KMDDKS 290
Score = 130 (50.8 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 26/74 (35%), Positives = 42/74 (56%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G +++ NL + +KLKE+F GT+ V D G S+G G V F P EA +A++
Sbjct: 211 GATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAIS 270
Query: 371 EMNGKMIVSKPLYV 384
NG+M+ + ++V
Sbjct: 271 MFNGQMLFDRQMHV 284
Score = 127 (49.8 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 29/80 (36%), Positives = 47/80 (58%)
Query: 111 SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 170
S R G IF++NL + + L + FS G ++ +I + +G+SKG G V+F++ ES
Sbjct: 473 SDRSKGGCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPES 531
Query: 171 AQNAIDKLNGMLINDKQVFV 190
A+ A +NG IN ++V V
Sbjct: 532 AEKACRLMNGTKINGREVDV 551
Score = 120 (47.3 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 33/104 (31%), Positives = 48/104 (46%)
Query: 91 LNFTP--LNNKSIRIMYSHRDPSIRKSGT--GNIFIKNLDKSIDHKALHDTFSSFGNILS 146
+N P NN +I H S ++G IF+ NLD + K L + F G +
Sbjct: 185 INIPPSIANNPNI----PHEIISALQAGRLGATIFVANLDFKVGWKKLKEVFGMAGTVRR 240
Query: 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
+ D G+S+G G V FE A AI NG ++ D+Q+ V
Sbjct: 241 ADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFNGQMLFDRQMHV 284
Score = 115 (45.5 bits), Expect = 3.9e-18, Sum P(3) = 3.9e-18
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G ++++NL + +KLKE FS G + ++ + +G SKG G V F +PE A +A
Sbjct: 479 GCQIFVRNLSYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACR 537
Query: 371 EMNGKMI 377
MNG I
Sbjct: 538 LMNGTKI 544
Score = 114 (45.2 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 47/182 (25%), Positives = 80/182 (43%)
Query: 102 RIMYSHRDPSIRKSGTGNI---FIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG-QS 157
R M R + +SG G + F +N D + ++ D+FSS G + G G
Sbjct: 374 RDMSMGRMGDMYRSGMGGMDRDFGRN-DLGMS-RSFGDSFSSLGGGFG-GMGNSGMGPMG 430
Query: 158 KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNL 216
G G + + D+++ + D G F ++ ++K +FV+NL
Sbjct: 431 SGLGMGNM-GMDRMNSGFDRMSSSM--DMSRGFGQFGGSGYMGGMSDRSKGGCQIFVRNL 487
Query: 217 DESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 276
+ + LK+ F G + A + + +GKSK G V F++ + A KA +NG K +
Sbjct: 488 SYDLSWQKLKEKFSHCGQVMYAEIKME-NGKSKGCGTVRFDSPESAEKACRLMNGTKING 546
Query: 277 RE 278
RE
Sbjct: 547 RE 548
Score = 97 (39.2 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 197 QERETVAIK--TKFNNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGF 253
+ER A K T N VF+ N+ + +K + E G +T + +DG+GKS+ G
Sbjct: 67 KERSGGADKKTTHRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGV 126
Query: 254 VNFENADDAAKAVEA-----LNGKKFDDREWYVGK-AQKKSEREQELKG 296
V F++ + KA+E LNG+ + +E G+ A++ +R + G
Sbjct: 127 VEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHARRVLQRSGRMYG 175
Score = 92 (37.4 bits), Expect = 3.9e-18, Sum P(3) = 3.9e-18
Identities = 28/100 (28%), Positives = 46/100 (46%)
Query: 105 YSHRDPSIRKSGT--GNIFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDGSGQSKGFG 161
Y R K T +FI N+ +A+ D G + ++ DG G+S+G G
Sbjct: 66 YKERSGGADKKTTHRNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCG 125
Query: 162 FVQFENKESAQNAID-----KLNGMLINDKQVFVGHFLRK 196
V+F+++E + AI+ LNG +N K+ G R+
Sbjct: 126 VVEFKDEEFVKKAIEVMSKHDLNGRPLNIKEDPDGEHARR 165
Score = 85 (35.0 bits), Expect = 9.1e-09, Sum P(2) = 9.1e-09
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
L +++V +LDF V +L ++F G V V D +S G G V + P +A +A
Sbjct: 210 LGATIFVANLDFKVGWKKLKEVFGMAGTVRRADVKED-KDGKSRGMGTVTFEQPLEAVQA 268
Query: 88 LDVLNFTPLNNKSIRI 103
+ + N L ++ + +
Sbjct: 269 ISMFNGQMLFDRQMHV 284
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 251 (93.4 bits), Expect = 4.5e-18, P = 4.5e-18
Identities = 94/400 (23%), Positives = 184/400 (46%)
Query: 2 AQIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDL----DFNVTDSQLYDLFSQVGQVL 57
A+ + + + + P A G F SL++G+L DF+ S + FS+ G L
Sbjct: 265 AKRKAETKKEKGTPPAKKAKTDGEGF---SLFLGNLNNNKDFDELKSAISKFFSKEG--L 319
Query: 58 SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR 113
++ R T++ +GYV++A+ + +AL+ LN L + +++ + + +
Sbjct: 320 EIQDVRLGGTKK---FGYVDFASEEELQKALE-LNGKKLLGQPVKLDKARSKENSQENKK 375
Query: 114 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 173
+ +F+KNL SI L + F +I ++ +G S+G +++F+ + A+
Sbjct: 376 ERDARTLFVKNLPYSITQDDLREIFDQAVDI---RVPMGNTGTSRGIAYIEFKTEAIAEK 432
Query: 174 AIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYG 233
A+++ G + + + V K + + + V NL S +++ L+ +F +
Sbjct: 433 ALEEAQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFEKAV 492
Query: 234 TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE 293
+I + +G+ K + FV FEN +D+ +A+E N + R + +Q ++RE+
Sbjct: 493 SIR----IPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQ--NDRERG 546
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISK 352
G+ +T L++K L D D+ LK+ F G I + ++ D +G SK
Sbjct: 547 GGGRGNSGPTKT--------LFVKGLSDDTTDQTLKDSFD--GAIAA-RIATDRDTGSSK 595
Query: 353 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
G GFV F ++ A M+ I + + A+ K E
Sbjct: 596 GFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDYAKPKGE 635
Score = 153 (58.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 52/187 (27%), Positives = 89/187 (47%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
++F+ NL+ + ++LK ++ + + G +K FG+V+F + ++ KA+E L
Sbjct: 291 SLFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALE-L 349
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
NGKK + + KA+ K E QE K KE L++KNL SI + L+
Sbjct: 350 NGKKLLGQPVKLDKARSK-ENSQENK-------KER----DARTLFVKNLPYSITQDDLR 397
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
E+F + I +V +G S+G ++ F T A +AL E G + + + V
Sbjct: 398 EIFDQAVDI---RVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGD 454
Query: 390 KEERRAR 396
K + R
Sbjct: 455 KSRQGGR 461
Score = 130 (50.8 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 36/117 (30%), Positives = 67/117 (57%)
Query: 275 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
++ E A++K+E ++E KG A K D +G +L++ NL ++ D ++LK S+
Sbjct: 256 EEEETPATPAKRKAETKKE-KGT-PPAKKAKTDG-EGFSLFLGNLNNNKDFDELKSAISK 312
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391
F + ++ G +K G+V F++ EE +AL E+NGK ++ +P+ + A+ KE
Sbjct: 313 FFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKAL-ELNGKKLLGQPVKLDKARSKE 368
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 186 (70.5 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 58/207 (28%), Positives = 97/207 (46%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADDAAKAVEAL 269
+FV L S E L+++F + G + V+ + K+ + FG+V F +D +A++ +
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQA---MKETVDKFQGL-----NLYIKNLGD 321
F+ + V A+KK + + KG+ E + KE K + L I+NL
Sbjct: 66 T--TFEGCKINVTIAKKKQRNKSKEKGENENSEPPKKEPKPKKPKVADKKARLIIRNLSF 123
Query: 322 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381
++ LK +F ++G + + R P G +G FV F EA +AL MN K I +
Sbjct: 124 KCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKGRT 183
Query: 382 LYV--AVAQRKEERRARLQAQFSQMRP 406
+ V AVA+ K + A + RP
Sbjct: 184 VAVDWAVAKDKYKNTQSASAP-GEKRP 209
Score = 149 (57.5 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 33/106 (31%), Positives = 58/106 (54%)
Query: 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
K ++ VA K + ++NL +++DLK +FG+YG + + R DGK + F FV
Sbjct: 103 KPKKPKVADKKA--RLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQ 160
Query: 256 FENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKGQ 297
F+N +A KA++++N K+ R +W V K + K+ + G+
Sbjct: 161 FKNLLEAGKALKSMNMKEIKGRTVAVDWAVAKDKYKNTQSASAPGE 206
Score = 122 (48.0 bits), Expect = 0.00061, P = 0.00061
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 369
GL L++ L S E+L+ELFS+ G + C V+ + S +G G+V FS E+ RAL
Sbjct: 3 GLTLFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRAL 62
Query: 370 AEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRP 406
E+ + V +A++K+ +++ + + P
Sbjct: 63 KEIT--TFEGCKINVTIAKKKQRNKSKEKGENENSEP 97
Score = 108 (43.1 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 34/129 (26%), Positives = 63/129 (48%)
Query: 281 VGKAQKKSEREQELKGQFEQAMKETV--DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI 338
+ ++ SE +++ Q + K + D +G ++I+NL ++E+L EL +FG +
Sbjct: 294 LAQSDTNSEEQEDEDMQISKKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGDL 353
Query: 339 TSCKVMRDP-SGISKGSGFVAFSTPEEASRAL------AEMNGKMIVSKPLYVAVAQRKE 391
+++ P + SKG F F T E A + L E G + + L V +A ++
Sbjct: 354 KYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCLEAASPETEGGGLKLDGRQLRVDLAVTRD 413
Query: 392 ERRARLQAQ 400
E A+LQ +
Sbjct: 414 EA-AKLQTK 421
Score = 93 (37.8 bits), Expect = 1.7e-11, Sum P(3) = 1.7e-11
Identities = 23/79 (29%), Positives = 35/79 (44%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+ I+NL L F +G +L I G+ +GF FVQF+N A A+ +N
Sbjct: 116 LIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMN 175
Query: 180 GMLINDKQVFVGHFLRKQE 198
I + V V + K +
Sbjct: 176 MKEIKGRTVAVDWAVAKDK 194
Score = 90 (36.7 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
+F+ L S + L + FS G + C + T+ GS +GFG+V F E Q A+ ++
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Score = 88 (36.0 bits), Expect = 5.9e-16, Sum P(3) = 5.9e-16
Identities = 36/125 (28%), Positives = 54/125 (43%)
Query: 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF-----SEFGT-ITS 340
K ER + LK Q +K+ L + NL +DD++L++L E G +
Sbjct: 457 KRERFELLK---HQKLKDQNIFVSQTRLCLHNLPKGVDDKELRKLLLNATRGEKGVRLKE 513
Query: 341 CKVMRDPSGI-------SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 393
C+VMRD G+ S G F F E A AL +N + PL + + E
Sbjct: 514 CRVMRDLKGVHGKVKGQSLGYAFAEFQEHEHALTALRHINNNPEIFGPLKRPIVEFSLED 573
Query: 394 RARLQ 398
R +L+
Sbjct: 574 RRKLK 578
Score = 86 (35.3 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 33/133 (24%), Positives = 61/133 (45%)
Query: 195 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGF 253
+K++R+ + + VF++NL + +E+L ++ ++G + +V+ SK F
Sbjct: 313 KKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAF 372
Query: 254 VNFENADDAAKAVEALN------GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 307
F + A K +EA + G K D R+ V A R++ K Q ++ K T
Sbjct: 373 AQFMTQEAAQKCLEAASPETEGGGLKLDGRQLRVDLAVT---RDEAAKLQTKKVKKPTGT 429
Query: 308 KFQGLNLYIKNLG 320
+ NLY+ G
Sbjct: 430 R----NLYLAREG 438
Score = 85 (35.0 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL-D 89
+L+V L + QL +LFSQVG + V + ++ G+GYV ++ D RAL +
Sbjct: 5 TLFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 90 VLNF 93
+ F
Sbjct: 65 ITTF 68
Score = 85 (35.0 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L + +L F ++ L +F Q G VL V + R + G+ +V + N +A +AL +
Sbjct: 116 LIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMR-GFAFVQFKNLLEAGKALKSM 174
Query: 92 NFTPLNNKSIRI 103
N + +++ +
Sbjct: 175 NMKEIKGRTVAV 186
Score = 77 (32.2 bits), Expect = 9.9e-08, Sum P(3) = 9.9e-08
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENK 168
PS G +FI+NL + + L + FG++ +I + SKG F QF +
Sbjct: 320 PSDVNEGK-TVFIRNLSFDSEEEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQ 378
Query: 169 ESAQNAID 176
E+AQ ++
Sbjct: 379 EAAQKCLE 386
Score = 52 (23.4 bits), Expect = 9.0e-06, Sum P(3) = 9.0e-06
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 194 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF-----GEYGT-ITSAVVMRD---- 243
L+ Q+ + I + + NL + D++L+K+ GE G + VMRD
Sbjct: 464 LKHQKLKDQNIFVSQTRLCLHNLPKGVDDKELRKLLLNATRGEKGVRLKECRVMRDLKGV 523
Query: 244 -G--DGKSKCFGFVNFENADDAAKAVEALN 270
G G+S + F F+ + A A+ +N
Sbjct: 524 HGKVKGQSLGYAFAEFQEHEHALTALRHIN 553
Score = 49 (22.3 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 29/113 (25%), Positives = 49/113 (43%)
Query: 275 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL------ 328
+D+E V K + +R E + ++ D+ GL K DSID E+L
Sbjct: 245 EDKESRVTKPAQIQKRAVRRAAPAESSEEDHSDEDSGL----KERDDSIDGEELAQSDTN 300
Query: 329 -KELFSEFGTITSCKVMRDPSGISKGSG-FV---AFSTPEEASRALAEMNGKM 376
+E E I+ K + PS +++G F+ +F + EE L + G +
Sbjct: 301 SEEQEDEDMQISKKKKRKLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGDL 353
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 168 (64.2 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 46/145 (31%), Positives = 70/145 (48%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VG + ++ +SQL ++F + G V S+ V RD +T S G +V + A +A D L
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDAL 418
Query: 92 -NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
N LN I D R +F+ L+K ++ + F G I C +
Sbjct: 419 HNVKTLNGMYHPIQMKPADSENRNER--KLFVGMLNKKLNENDVRKLFEVHGAIEECTVL 476
Query: 151 TDGSGQSKGFGFVQFENKESAQNAI 175
D +GQSKG FV F K +A +AI
Sbjct: 477 RDQNGQSKGCAFVTFATKHAAISAI 501
Score = 155 (59.6 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
Identities = 50/196 (25%), Positives = 88/196 (44%)
Query: 103 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFG 161
+ Y ++P +F+ + KS+D L + F +G + S + D +G SKG
Sbjct: 345 VTYGEKEPD---PDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCC 401
Query: 162 FVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTT 221
FV F + +A A D L+ + + G + Q + + +FV L++
Sbjct: 402 FVTFYTRHAALKAQDALHNV-----KTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLN 456
Query: 222 DEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA-LNGKKFDD---R 277
+ D++K+F +G I V+RD +G+SK FV F A A++ L+ K +
Sbjct: 457 ENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTS 516
Query: 278 EWYVGKAQKKSEREQE 293
V A + E+EQ+
Sbjct: 517 PLVVKFADTQKEKEQK 532
Score = 135 (52.6 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEA 268
N+F+ +L + TD DL F +G + SA V D SKCFGFV+F+N D A A++A
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 269 LNG 271
+NG
Sbjct: 787 MNG 789
Score = 133 (51.9 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 30/73 (41%), Positives = 43/73 (58%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+FI +L + L TF FGN++S K+ D + SK FGFV F+N +SAQ AI
Sbjct: 727 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKA 786
Query: 178 LNGMLINDKQVFV 190
+NG + K++ V
Sbjct: 787 MNGFQVGTKRLKV 799
Score = 131 (51.2 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 52/196 (26%), Positives = 89/196 (45%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+FV + +S + L+++F EYG + S V+RD K G +K +
Sbjct: 359 MFVGQVPKSMDESQLREMFEEYGAVHSINVLRD-----KATGI---------SKGCCFVT 404
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSIDDEK 327
F R + KAQ + L G + + D + N L++ L +++
Sbjct: 405 ---FYTRHAAL-KAQDALHNVKTLNGMYHPIQMKPADS-ENRNERKLFVGMLNKKLNEND 459
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL-AEMNGKMIV---SKPLY 383
+++LF G I C V+RD +G SKG FV F+T A A+ ++ I+ + PL
Sbjct: 460 VRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLV 519
Query: 384 VAVAQ-RKEERRARLQ 398
V A +KE+ + ++Q
Sbjct: 520 VKFADTQKEKEQKKIQ 535
Score = 128 (50.1 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRA 368
+G NL+I +L D L F FG + S KV D + +SK GFV+F P+ A A
Sbjct: 724 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 783
Query: 369 LAEMNGKMIVSKPLYVAVAQRKEER 393
+ MNG + +K L V + + K+ +
Sbjct: 784 IKAMNGFQVGTKRLKVQLKKPKDSK 808
Score = 38 (18.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 9/45 (20%), Positives = 22/45 (48%)
Query: 532 AKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQAN 576
A ++ + + + Q +++ SP +K + + + + Q QAN
Sbjct: 496 AAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQKKIQQIQAN 540
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 245 (91.3 bits), Expect = 5.7e-18, P = 5.7e-18
Identities = 77/277 (27%), Positives = 143/277 (51%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 178
+++ +L +D LH FS G + S K+ + + QS+G+GFV+F ++ +A+ +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 179 NGMLI-NDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNLDESTTDEDLKKIFGE-YGTI 235
+G ++ N Q F ++ E A++ + +VFV +L TD L + F + Y ++
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSV 229
Query: 236 TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK---SERE 291
SA V+ D + G+SK +GFV F + ++ ++A+ +NG +R+ VG A K + ++
Sbjct: 230 KSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQ 289
Query: 292 QE------LKGQFEQ--AM---KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS 340
Q L G +M ++ + +++ + + DE L++ FS+FG + S
Sbjct: 290 QHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVS 349
Query: 341 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
K+ P G KG GFV F+ + A A+ +NG +I
Sbjct: 350 VKI---PVG--KGCGFVQFADRKSAEDAIESLNGTVI 381
Score = 216 (81.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 60/193 (31%), Positives = 106/193 (54%)
Query: 7 QHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS 66
QHQ Q + G SG+ T L+VGDL + ++ L+ FS G+V SV+V R+
Sbjct: 90 QHQHQQH--KAIDRG-SGDDVKT--LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKL 144
Query: 67 TRRSLGYGYVNYANPADAARALDVLNFT--PLNNKSIRI---MYSHRDPSIRKSGTG-NI 120
T +S GYG+V + + A A L + + P +++ RI +S + ++G ++
Sbjct: 145 TSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSV 204
Query: 121 FIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKL 178
F+ +L + LH+TFS + ++ S K+ D + G+SKG+GFV+F ++ A+ ++
Sbjct: 205 FVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEM 264
Query: 179 NGMLINDKQVFVG 191
NG +++Q+ VG
Sbjct: 265 NGAYCSNRQMRVG 277
Score = 163 (62.4 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 54/174 (31%), Positives = 82/174 (47%)
Query: 222 DED-LKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 279
DE L F G ++S V+R+ +S+ +GFV F + A A E L
Sbjct: 120 DETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSR---AAAEEVLQN-------- 168
Query: 280 YVGKAQKKSEREQELK-GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE-FGT 337
Y G S++ + F K V+ L++++ +L + D L E FS+ + +
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPS 228
Query: 338 ITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390
+ S KV+ D + G SKG GFV F E SRAL EMNG ++ + V +A K
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 114 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 173
+S IF+ +D + + L FS FG ++S KI KG GFVQF +++SA++
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV-----GKGCGFVQFADRKSAED 371
Query: 174 AIDKLNGMLINDKQV 188
AI+ LNG +I V
Sbjct: 372 AIESLNGTVIGKNTV 386
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 173 (66.0 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 49/191 (25%), Positives = 94/191 (49%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
VFV ++ S +E + +IF ++G I +++D SK F+ F ++A A+
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
N G + + ++K + ++K + L+I LG S D+++++
Sbjct: 80 NES---------GTFLENMNKPLQVKYSDNE-----IEKMER-KLFIGMLGTS-DEDQIR 123
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 386
LF +G I ++R+ G KG GF+ +ST +E+ AL E++GK + + P+ V
Sbjct: 124 ILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDGKHTLPGSNLPIIVKF 183
Query: 387 AQRKEERRARL 397
A + ++R +L
Sbjct: 184 ADTERQKRKKL 194
Score = 170 (64.9 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 40/160 (25%), Positives = 82/160 (51%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84
NQ +++VG + ++ + + +F++ G +L + + +D T S G ++ ++ +A
Sbjct: 13 NQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEA 72
Query: 85 ARALDVLN----FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 140
AL+ N F NK +++ YS D I K +FI L S D + F +
Sbjct: 73 DNALNTTNESGTFLENMNKPLQVKYS--DNEIEKMER-KLFIGMLGTS-DEDQIRILFGN 128
Query: 141 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180
+G I I + G+ KG+GF+++ ++ ++NA+ +++G
Sbjct: 129 YGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREIDG 168
Score = 166 (63.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 61/265 (23%), Positives = 120/265 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN---PADAARAL 88
L++G L + D Q+ LF G + + + R+ + GYG++ Y+ +A R +
Sbjct: 109 LFIGMLGTSDED-QIRILFGNYGIIEDLNIVREKDGKPK-GYGFIKYSTRDESENALREI 166
Query: 89 DVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFI-KN----LDKSIDHKALHDTFSSFGN 143
D + P +N I + ++ + RK GN +N ++ + N
Sbjct: 167 DGKHTLPGSNLPIIVKFADTERQKRKKLLGNQQPPQNPFNFYQQNQQQQQQQQQQQQQQN 226
Query: 144 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 203
S S+ G + + N +N ++ Q F + ++Q+++
Sbjct: 227 QYQPFFYGQNSQMSQAMGNNGYRGYQQQPN----VNFGMMQGNQAF-DYNQQQQQQQQQQ 281
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDA 262
+ N++F+ L + DE+LK++F YG + S+ V D + + SKCFGFV+++N A
Sbjct: 282 QPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSA 341
Query: 263 AKAVEALNGKKFDDREWYVGKAQKK 287
A++ LNG+ + ++ V ++K
Sbjct: 342 IAAIQELNGRAIEGKKLKVNFKREK 366
Score = 136 (52.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 29/103 (28%), Positives = 59/103 (57%)
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFV 357
+Q ++ ++ G +++ ++ S+++E + ++F++FG I +++D + +SKG F+
Sbjct: 5 QQQQQQQFNQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFI 64
Query: 358 AFSTPEEASRALAEMN--GKMI--VSKPLYVAVAQRKEERRAR 396
FST EEA AL N G + ++KPL V + + E+ R
Sbjct: 65 TFSTKEEADNALNTTNESGTFLENMNKPLQVKYSDNEIEKMER 107
Score = 127 (49.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 175
+ ++FI L + + L F+ +GN++S K+ D + QSK FGFV ++N +SA AI
Sbjct: 286 SNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAI 345
Query: 176 DKLNGMLINDKQVFVGHFLRKQE 198
+LNG I K++ V +F R+++
Sbjct: 346 QELNGRAIEGKKLKV-NFKREKQ 367
Score = 121 (47.7 bits), Expect = 5.7e-18, Sum P(2) = 5.7e-18
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 297 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSG 355
Q +Q ++ + +L+I L + DE+LK+LF+ +G + S KV D + SK G
Sbjct: 272 QQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFG 331
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391
FV++ + A A+ E+NG+ I K L V + K+
Sbjct: 332 FVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKREKQ 367
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 243 (90.6 bits), Expect = 7.2e-18, P = 7.2e-18
Identities = 73/267 (27%), Positives = 134/267 (50%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
+++I +L +D L F G ++S K+ + +GQS+G+GF++F + +A+ +
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 178 LNGMLI-NDKQVFVGHF--LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGE-YG 233
NG L+ N +Q F ++ L ER + + + +FV +L TD L++ F Y
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAE---HTIFVGDLAADVTDYILQETFKSVYS 201
Query: 234 TITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ 292
++ A V+ D G+SK +GFV F + + +A+ +NG R +G A K
Sbjct: 202 SVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGT 261
Query: 293 ELKGQFE--QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350
K ++ QA + D +++ L ++ +E L+++FS +G + K++ +G
Sbjct: 262 PQKATYQNPQATQGESDP-NNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---AG- 316
Query: 351 SKGSGFVAFSTPEEASRALAEMNGKMI 377
K GFV F T A +AL+ +NG +
Sbjct: 317 -KRCGFVQFGTRASAEQALSSLNGTQL 342
Score = 217 (81.4 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 78/310 (25%), Positives = 145/310 (46%)
Query: 5 QVQHQAQMS-GPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCR 63
Q Q+ A + PN +GN SL++GDL + + ++ L F G+++S +V R
Sbjct: 61 QQQYGAMATTNPN---PSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIR 117
Query: 64 DLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN--KSIRIMYSHRDPSIRK--SGTGN 119
+ T +S GYG++ + + A A L N T + N ++ R+ ++ R+ S
Sbjct: 118 NKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHT 177
Query: 120 IFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
IF+ +L + L +TF S + ++ K+ TD +G+SKG+GFV+F ++ A+ +
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 237
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF-GEYGTIT 236
+NG+L + + + +G K+ T K + N + +D + IF G
Sbjct: 238 MNGVLCSTRPMRIGPAANKKPVGTPQ-KATYQN---PQATQGESDPNNTTIFVGGLDPTV 293
Query: 237 SAVVMRD-----GD--------GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 283
+ +R G+ GK +C GFV F A +A+ +LNG + + +
Sbjct: 294 AEEHLRQVFSPYGELVHVKIVAGK-RC-GFVQFGTRASAEQALSSLNGTQLGGQSIRLSW 351
Query: 284 AQKKSEREQE 293
+ S ++ +
Sbjct: 352 GRSPSSKQTD 361
Score = 136 (52.9 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 50/174 (28%), Positives = 82/174 (47%)
Query: 222 DED-LKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 279
DE+ L F G + SA V+R+ G+S+ +GF+ F + A ++ NG + E
Sbjct: 96 DENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVE- 154
Query: 280 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF-SEFGTI 338
Q L G E+ D +++ +L + D L+E F S + ++
Sbjct: 155 -----QNFRMNWASL-GAGERR-----DDSAEHTIFVGDLAADVTDYILQETFKSVYSSV 203
Query: 339 TSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391
KV+ D +G SKG GFV F+ E RA+ EMNG + ++P+ + A K+
Sbjct: 204 RGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKK 257
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 183 (69.5 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 47/164 (28%), Positives = 86/164 (52%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD----GDGKSKCFGFVNFENADDAAKAV 266
+F+KNL+ TT+E LK++F + GT+ S + + G S FGFV + + A KA+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDE 326
+ L G D + V +++ ++ L + + K+T K + ++N+
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSK-----ILVRNIPFQAHSR 846
Query: 327 KLKELFSEFGTITSCKVMRDPSGIS--KGSGFVAFSTPEEASRA 368
+++ELFS FG + + ++ + +G +G GFV F T ++A RA
Sbjct: 847 EIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRA 890
Score = 182 (69.1 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 45/164 (27%), Positives = 85/164 (51%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR---SLGYGYVNYANPADAARA 87
+L++ +L+F+ T+ +L ++FS+VG V S + + + S+G+G+V Y P A +A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 88 LDVLNFTPLNNKSIRIMYSHR--DPSI---------RKSGTGNIFIKNLDKSIDHKALHD 136
L L ++ + + S R P++ RK T I ++N+ + + +
Sbjct: 791 LKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRE 850
Query: 137 TFSSFGNILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDKL 178
FS+FG + + ++ G+G +GFGFV F K+ A+ A + L
Sbjct: 851 LFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 166 (63.5 bits), Expect = 8.7e-10, Sum P(2) = 8.7e-10
Identities = 45/163 (27%), Positives = 79/163 (48%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD----GSGQSKGFGFVQFENKESAQNAI 175
+FIKNL+ + L + FS G + SC I+ G S GFGFV++ E AQ A+
Sbjct: 732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKAL 791
Query: 176 DKLNGMLINDK--QVFVGHFLRKQ-----ERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+L G +++ +V + K ++ V K + + V+N+ +++++
Sbjct: 792 KQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIREL 851
Query: 229 FGEYGTITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEAL 269
F +G + + + + G G + FGFV+F DA +A AL
Sbjct: 852 FSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNAL 894
Score = 163 (62.4 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR--DPSGI--SKGS 354
E+ +E + G L+IKNL +EKLKE+FS+ GT+ SC + + + +G+ S G
Sbjct: 717 EEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGF 776
Query: 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
GFV + PE+A +AL ++ G ++ L V +++R
Sbjct: 777 GFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISER 811
Score = 131 (51.2 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 43/195 (22%), Positives = 94/195 (48%)
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
T + V ++ + T++++ + + +V R+ G + FV+F N ++ +A
Sbjct: 291 TTCHTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIV-RNAHGNKTGYIFVDFSNEEEVKQA 349
Query: 266 V----EALNGKK---FDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKN 318
+ E + G+ F ++ K K+ + +G+ +E D + L+++N
Sbjct: 350 LKCNREYMGGRYIEVFREKNVPTTKGAPKNTTKS-WQGRILGENEEEEDLAESGRLFVRN 408
Query: 319 LGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI 377
L + +E L++LFS++G ++ D + KG F+ F PE A +A +E++G++
Sbjct: 409 LPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVF 468
Query: 378 VSKPLYVAVAQRKEE 392
+ L+V + K+E
Sbjct: 469 QGRMLHVLPSTIKKE 483
Score = 125 (49.1 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 46/176 (26%), Positives = 77/176 (43%)
Query: 138 FSSFGNILSCKIATDGSGQSKGFGFVQ-FENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196
F F N K A + + G +++ F K + G N + + G L +
Sbjct: 337 FVDFSNEEEVKQALKCNREYMGGRYIEVFREKN-----VPTTKGAPKNTTKSWQGRILGE 391
Query: 197 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVN 255
E E ++ +FV+NL ++T+EDL+K+F +YG ++ D K K F F+
Sbjct: 392 NEEEEDLAES--GRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFIT 449
Query: 256 FENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE---LKGQFEQAMKETVDK 308
F + A KA ++G+ F R +V + K E ++ L + KE DK
Sbjct: 450 FMFPEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDK 505
Score = 112 (44.5 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ + VKNL +E +++F +GT+T + DGK + FGF+ F++ ++A KA +
Sbjct: 2 SRLIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKH 61
Query: 269 LNGKKFDD 276
N K F D
Sbjct: 62 FN-KSFID 68
Score = 106 (42.4 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 58/285 (20%), Positives = 119/285 (41%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L+V +L + T+ L LFS+ G + + D T++ G+ ++ + P A +A +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 92 NFTPLNNKSIRIMYS--HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI-LSCK 148
+ + + ++ S ++ S S G+ K ++ D KA + ++ + +
Sbjct: 464 DGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQD-KANSASSHNWNTLFMGPN 522
Query: 149 IATDGSGQSKGFGFVQ-FENKESAQNAIDKLNG--MLINDKQVF-VGHFLRKQERETVAI 204
D Q Q F+++ A+ G L+ + + F + + + A
Sbjct: 523 AVADAIAQKYNATKSQVFDHETKGSVAVRVALGETQLVQEVRRFLIDNGVSLDSFSQAAA 582
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
+ + VKNL T L++ FG +G++ V++ +G G + V F +A K
Sbjct: 583 ERSKTVILVKNLPAGTLAAQLQETFGHFGSL-GRVLLPEG-GIT---AIVEFLEPLEARK 637
Query: 265 AVEALNGKKFDD----REWY-VGKAQKKSEREQELKGQFEQAMKE 304
A L KF EW VG + ++++L+ + M++
Sbjct: 638 AFRHLAYSKFHHVPLYLEWAPVGVFSSTAPQKKKLQDTPSEPMEK 682
Score = 103 (41.3 bits), Expect = 4.3e-16, Sum P(2) = 4.3e-16
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+ +KNL + + F++FG + C + G+ + FGF+ F+++E AQ A N
Sbjct: 4 LIVKNLPNGMKEERFRQLFAAFGTLTDCSLKFTKDGKFRKFGFIGFKSEEEAQKAQKHFN 63
Query: 180 GMLINDKQVFV 190
I+ ++ V
Sbjct: 64 KSFIDTSRITV 74
Score = 60 (26.2 bits), Expect = 8.5e-18, Sum P(3) = 8.5e-18
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 39 FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
FNVT+ + + + + V ++R+ R+ ++ GY +V+++N + +AL
Sbjct: 303 FNVTEKNVMEFLAPLKPV-AIRIVRNAHGNKT-GYIFVDFSNEEEVKQAL 350
Score = 57 (25.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETV-A 203
++ +I + G G+ FV F N+E + A+ K N + + + V F K T A
Sbjct: 320 VAIRIVRNAHGNKTGYIFVDFSNEEEVKQAL-KCNREYMGGRYIEV--FREKNVPTTKGA 376
Query: 204 IKTKFNNVFVKNLDESTTDEDL 225
K + + L E+ +EDL
Sbjct: 377 PKNTTKSWQGRILGENEEEEDL 398
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 132 (51.5 bits), Expect = 9.3e-18, Sum P(3) = 9.3e-18
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 239
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELK 295
NG+ DR +V K KS ++ +
Sbjct: 240 FNGQFLFDRPMHV-KMDDKSVPHEDYR 265
Score = 126 (49.4 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 179 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 238
Query: 371 EMNGKMIVSKPLYV 384
NG+ + +P++V
Sbjct: 239 MFNGQFLFDRPMHV 252
Score = 123 (48.4 bits), Expect = 9.3e-18, Sum P(3) = 9.3e-18
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 353
L G M+E + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 439 LSGPMGSGMRERIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 496
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
G V F +PE A +A MNG I + + V
Sbjct: 497 CGTVRFDSPESAEKACRIMNGIKISGREIDV 527
Score = 118 (46.6 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 113 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 450 RIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 508
Query: 172 QNAIDKLNGMLINDKQVFV 190
+ A +NG+ I+ +++ V
Sbjct: 509 EKACRIMNGIKISGREIDV 527
Score = 116 (45.9 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 34/103 (33%), Positives = 47/103 (45%)
Query: 90 VLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
++N P LNN +I + R T IF+ NLD + K L + FS G +
Sbjct: 152 LMNLPPSILNNPNIPPEVITNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRA 209
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
I D G+S+G G V FE A AI NG + D+ + V
Sbjct: 210 DIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 252
Score = 115 (45.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
I +K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A
Sbjct: 451 IGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAE 509
Query: 264 KAVEALNGKKFDDRE 278
KA +NG K RE
Sbjct: 510 KACRIMNGIKISGRE 524
Score = 94 (38.1 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 29/113 (25%), Positives = 51/113 (45%)
Query: 166 ENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNVFVKNLDESTTDE 223
EN E + +L + +K+ H K + K N VF+ N+ +
Sbjct: 2 ENDEPVKEEKSELKEKSMGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQ 61
Query: 224 DLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275
+K + E G +T + +D +GKS+ G V F++ + KA+E +N K+D
Sbjct: 62 AIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN--KYD 112
Score = 85 (35.0 bits), Expect = 9.3e-18, Sum P(3) = 9.3e-18
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 97 NNKSIRIMYSHRDPSIRKSGTGN--------IFIKNLDKSIDHKALHDTF-SSFGNILSC 147
N K+ R +D + SGTG +FI N+ + +A+ D G +
Sbjct: 21 NKKANRFHPYSKD---KNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYV 77
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
++ D G+S+G G V+F+++E + A++ +N
Sbjct: 78 ELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 109
Score = 76 (31.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
L ++++V +LDF V +L ++FS G V + D +S G G V + +A +A
Sbjct: 178 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKED-KDGKSRGMGTVTFEQAIEAVQA 236
Query: 88 LDVLN 92
+ + N
Sbjct: 237 ISMFN 241
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 455 PLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMP 495
P+G +++ P G G M V MG G+ R +S + P
Sbjct: 384 PVGSGIKN-PGG-GMGGMNSVTGGMGMGLDRMSSSFDRMGP 422
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 161 (61.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 52/185 (28%), Positives = 89/185 (48%)
Query: 95 PLN-NKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD 152
P+N ++SI I H + K +FI + ++++ K L F FG I + D
Sbjct: 114 PMNGSESISI---HPENGTMKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKD 170
Query: 153 G-SGQSKGFGFVQFENKESA---QNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKF 208
+G KG F+ + +ESA QNA+ + + + + V + + E+ + +
Sbjct: 171 RYTGMHKGCAFLTYCARESAIKAQNALHEQKTLPGMTRPIQV----KPADSES---RGED 223
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+FV L++ T+ED+ ++F YG I V+R DG SK FV F +A A+ A
Sbjct: 224 RKLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISA 283
Query: 269 LNGKK 273
L+G +
Sbjct: 284 LHGSQ 288
Score = 151 (58.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 47/165 (28%), Positives = 77/165 (46%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
+F+ + + ++DLK +F ++G I V++D G K F+ + + A KA AL
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+ +K Q K + E +G+ D+ L++ L +E +
Sbjct: 198 HEQK--TLPGMTRPIQVKPA-DSESRGE---------DR----KLFVGMLNKQQTEEDVY 241
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374
LF +G I C V+R P G SKG FV FST EA A++ ++G
Sbjct: 242 RLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHG 286
Score = 146 (56.5 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 48/211 (22%), Positives = 90/211 (42%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L++G + N+ + L LF Q G++ + V +D T G ++ Y A +A + L
Sbjct: 138 LFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNAL 197
Query: 92 NFTP-LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150
+ L + I D R +F+ L+K + ++ F +G I C +
Sbjct: 198 HEQKTLPGMTRPIQVKPADSESRGEDR-KLFVGMLNKQQTEEDVYRLFEPYGVIEECTVL 256
Query: 151 TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNN 210
G SKG FV+F AQ+AI L+G + + G + + ++ KF +
Sbjct: 257 RGPDGNSKGCAFVKFSTHAEAQSAISALHG----SQTMPTGSDSLLPQGASSSLVVKFAD 312
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVM 241
D+ T ++++ G++G A+ +
Sbjct: 313 T-----DKERTIRRMQQMVGQFGIFNPAIAL 338
Score = 136 (52.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 368
+G NL+I +L D +L ++F FGT+ S KV D + SK GFV+F P A A
Sbjct: 510 EGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAA 569
Query: 369 LAEMNGKMIVSKPLYVAVAQRKEERR 394
+ MNG I K L V + + K+ R
Sbjct: 570 IQAMNGFQIGMKRLKVQLKRPKDASR 595
Score = 130 (50.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
N+F+ +L + D +L ++F +GT+ S+ V D +SKCFGFV+F+N A A++A
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 269 LNG 271
+NG
Sbjct: 573 MNG 575
Score = 129 (50.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 30/73 (41%), Positives = 41/73 (56%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
N+FI +L + L F FG ++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 513 NLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQA 572
Query: 178 LNGMLINDKQVFV 190
+NG I K++ V
Sbjct: 573 MNGFQIGMKRLKV 585
Score = 67 (28.6 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
M+ P V S ++ L+VG L+ T+ +Y LF G + V R S
Sbjct: 206 MTRPIQVKPADSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRG-PDGNSK 264
Query: 72 GYGYVNYANPADAARALDVLN 92
G +V ++ A+A A+ L+
Sbjct: 265 GCAFVKFSTHAEAQSAISALH 285
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 209 (78.6 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/160 (30%), Positives = 90/160 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
S+YVG++ VT+ L ++F+ G V S ++ R + YG+V+Y + AA A+
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIR----KDKSSYGFVHYFDRRSAALAILS 115
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149
LN L + I++ +++ + + NIF+ +L + L+ +FS F + ++
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARV 175
Query: 150 ATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
D +G+S+GFGFV F N++ AQ AI+++NG ++ +Q+
Sbjct: 176 MWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
Score = 185 (70.2 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 71/275 (25%), Positives = 121/275 (44%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKE 169
P S ++++ N+ + L + F+S G + S K+ +GFV + ++
Sbjct: 51 PGFDPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRK---DKSSYGFVHYFDRR 107
Query: 170 SAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
SA AI LNG + + + V +RE + + FN +FV +L TD L + F
Sbjct: 108 SAALAILSLNGRHLFGQPIKVNWAYATGQREDTS--SHFN-IFVGDLSPEVTDATLYQSF 164
Query: 230 GEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYV--- 281
+ + + A VM D G+S+ FGFV+F N DA A+ +NGK R+ W
Sbjct: 165 SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGA 224
Query: 282 --GKAQKKSEREQ--ELKGQFEQAMKETVDKFQGLN---LYIKNLGDSIDDEKLKELFSE 334
G + S+ + EL + KET+++ N +G+ + +L
Sbjct: 225 TSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRY 284
Query: 335 FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 369
F + + + KG GFV ++T EA+ A+
Sbjct: 285 FHALGAGVIEEVRVQRDKGFGFVRYNTHPEAALAI 319
Score = 139 (54.0 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 310
+GFV++ + AA A+ +LNG+ + V A +RE +T F
Sbjct: 98 YGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWAYATGQRE------------DTSSHF- 144
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 369
N+++ +L + D L + FS F + + +VM D +G S+G GFV+F ++A A+
Sbjct: 145 --NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI 202
Query: 370 AEMNGKMIVSKPL 382
EMNGK + S+ +
Sbjct: 203 NEMNGKWLSSRQI 215
Score = 130 (50.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 33/86 (38%), Positives = 49/86 (56%)
Query: 20 AGASGNQFLTTS---LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYV 76
A A+G + T+S ++VGDL VTD+ LY FS RV D T RS G+G+V
Sbjct: 131 AYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFV 190
Query: 77 NYANPADAARALDVLNFTPLNNKSIR 102
++ N DA A++ +N L+++ IR
Sbjct: 191 SFRNQQDAQTAINEMNGKWLSSRQIR 216
Score = 78 (32.5 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 200 ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT--ITSAVVMRDGDGKSKCFGFVNFE 257
ET ++F V+V NL T DL + F G I V RD K FGFV +
Sbjct: 256 ETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD-----KGFGFVRYN 310
Query: 258 NADDAAKAVEALNGKKF 274
+AA A++ N + +
Sbjct: 311 THPEAALAIQMGNTQPY 327
Score = 56 (24.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NL + LH F + G + ++ + KGFGFV++ A AI N
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQ---RDKGFGFVRYNTHPEAALAIQMGN 323
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 133 (51.9 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 183 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 242
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELK 295
NG+ DR +V K KS ++ +
Sbjct: 243 FNGQFLFDRPMHV-KMDDKSVPHEDFR 268
Score = 126 (49.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 182 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 241
Query: 371 EMNGKMIVSKPLYV 384
NG+ + +P++V
Sbjct: 242 MFNGQFLFDRPMHV 255
Score = 122 (48.0 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 296 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 355
G AMKE + +G ++++NL + +KLKE FS+ G + ++ + +G SKG G
Sbjct: 449 GPMGGAMKERLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCG 506
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYV 384
V F +PE A +A MNG I + + V
Sbjct: 507 TVRFDSPESAEKACRIMNGIKISGREIDV 535
Score = 121 (47.7 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 39/125 (31%), Positives = 55/125 (44%)
Query: 68 RRSLGYGYVNYANPADAARALDVLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNL 125
RR+L G +A A ++N P +NN +I + R T IF+ NL
Sbjct: 133 RRALQRGGGQFAGGHGPDVAPGLMNLPPSIVNNPNIPPEVISNLQAGRLGST--IFVANL 190
Query: 126 DKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 185
D + K L + FS G + I D G+S+G G V FE A AI NG + D
Sbjct: 191 DFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFD 250
Query: 186 KQVFV 190
+ + V
Sbjct: 251 RPMHV 255
Score = 119 (46.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 113 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 458 RLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 516
Query: 172 QNAIDKLNGMLINDKQVFV 190
+ A +NG+ I+ +++ V
Sbjct: 517 EKACRIMNGIKISGREIDV 535
Score = 119 (46.9 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 153 GSGQSKGFGFVQFENKESAQNAIDK-LNGML---INDKQVFVGHFLRKQERETVAIKTKF 208
GSG S G G + + S + + + G L I+ + FV + +E + +K
Sbjct: 406 GSGMSGGMGGMGMDRMSSGFDRMGPAMGGGLDRNIDIDRGFVPGPMGGAMKERLG--SKG 463
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A KA
Sbjct: 464 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKACRI 522
Query: 269 LNGKKFDDRE 278
+NG K RE
Sbjct: 523 MNGIKISGRE 532
Score = 91 (37.1 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
N VF+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E
Sbjct: 50 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 109
Query: 268 ALNGKKFD 275
+N K+D
Sbjct: 110 TMN--KYD 115
Score = 84 (34.6 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 120 IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
+FI N+ + +A+ D G + ++ D G+S+G G V+F+++E + A++ +
Sbjct: 52 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 111
Query: 179 N 179
N
Sbjct: 112 N 112
Score = 76 (31.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
L ++++V +LDF V +L ++FS G V + D +S G G V + +A +A
Sbjct: 181 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKED-KDGKSRGMGTVTFEQAIEAVQA 239
Query: 88 LDVLN 92
+ + N
Sbjct: 240 ISMFN 244
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 134 (52.2 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQA 301
NG+ DR +V K KS ++ + +A
Sbjct: 293 FNGQFLFDRPMHV-KMDDKSVPHEDYRSHDSKA 324
Score = 126 (49.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 232 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 291
Query: 371 EMNGKMIVSKPLYV 384
NG+ + +P++V
Sbjct: 292 MFNGQFLFDRPMHV 305
Score = 120 (47.3 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 29/91 (31%), Positives = 49/91 (53%)
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 353
L G M++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 449 LSGPMGSGMRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 506
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
G V F +PE A +A MNG I + + V
Sbjct: 507 CGTVRFDSPESAEKACRIMNGIKISGREIDV 537
Score = 118 (46.6 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 113 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 460 RIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 518
Query: 172 QNAIDKLNGMLINDKQVFV 190
+ A +NG+ I+ +++ V
Sbjct: 519 EKACRIMNGIKISGREIDV 537
Score = 117 (46.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 34/103 (33%), Positives = 47/103 (45%)
Query: 90 VLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
++N P LNN +I + R T IF+ NLD + K L + FS G +
Sbjct: 205 LMNLPPSILNNPNIPPEVISNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRA 262
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
I D G+S+G G V FE A AI NG + D+ + V
Sbjct: 263 DIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 305
Score = 115 (45.5 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
I +K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A
Sbjct: 461 IGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAE 519
Query: 264 KAVEALNGKKFDDRE 278
KA +NG K RE
Sbjct: 520 KACRIMNGIKISGRE 534
Score = 103 (41.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 34/125 (27%), Positives = 56/125 (44%)
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNV 211
S S G V+ EN ES + +L +K+ H K + K N V
Sbjct: 46 SSSSNG---VKMENDESVKEEKSELKEKSTGNKKANRFHPYSKDKNSGTGEKKGPNRNRV 102
Query: 212 FVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
F+ N+ + +K + E G +T + +D +GKS+ G V F++ + KA+E +N
Sbjct: 103 FISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 162
Query: 271 GKKFD 275
K+D
Sbjct: 163 --KYD 165
Score = 85 (35.0 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 97 NNKSIRIMYSHRDPSIRKSGTGN--------IFIKNLDKSIDHKALHDTF-SSFGNILSC 147
N K+ R +D + SGTG +FI N+ + +A+ D G +
Sbjct: 74 NKKANRFHPYSKD---KNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYV 130
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
++ D G+S+G G V+F+++E + A++ +N
Sbjct: 131 ELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 162
Score = 76 (31.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
L ++++V +LDF V +L ++FS G V + D +S G G V + +A +A
Sbjct: 231 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKED-KDGKSRGMGTVTFEQAIEAVQA 289
Query: 88 LDVLN 92
+ + N
Sbjct: 290 ISMFN 294
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 197 (74.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 46/164 (28%), Positives = 92/164 (56%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
S+Y G++ VT+ L ++F+ G + S ++ R + YG+V+Y + A+ A+
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIR----KDKSSYGFVHYFDRRCASMAIMT 119
Query: 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILS--- 146
LN + + +++ +++ + + NIF+ +L + AL D+FS+F + S
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYR 179
Query: 147 -CKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
++ D +G+S+GFGFV F N++ AQ AI+++NG ++ +Q+
Sbjct: 180 DARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQI 223
Score = 171 (65.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 73/276 (26%), Positives = 121/276 (43%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
+++ N+ + L + F+S G I SCK+ +GFV + ++ A AI L
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKSSYGFVHYFDRRCASMAIMTL 120
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS- 237
NG I + + V +RE + + FN +FV +L TD L F + + +S
Sbjct: 121 NGRHIFGQPMKVNWAYATGQREDTS--SHFN-IFVGDLSPEVTDAALFDSFSAFNSCSSY 177
Query: 238 ---AVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDRE----WYV-----GKA 284
A VM D G+S+ FGFV+F N DA A+ +NGK R+ W G+
Sbjct: 178 YRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGED 237
Query: 285 QKKSEREQ--EL-KGQFEQAMKETVDKFQGLNLYIKNL--GDSIDDEKLKELFSEFGTIT 339
+ S+ + EL G E + + + N + G+ + +L F T+
Sbjct: 238 KHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLG 297
Query: 340 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK 375
+ + KG GFV ++T +EA+ A+ N +
Sbjct: 298 AGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 333
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 53/182 (29%), Positives = 89/182 (48%)
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
T +V+ N+ T+ L++IF G I S ++R KS +GFV++ + A+ A
Sbjct: 60 TTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKD--KSS-YGFVHYFDRRCASMA 116
Query: 266 VEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325
+ LNG+ + V A +RE +T F N+++ +L + D
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQRE------------DTSSHF---NIFVGDLSPEVTD 161
Query: 326 EKLKELFSEFGTITS----CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380
L + FS F + +S +VM D +G S+G GFV+F ++A A+ EMNGK + S+
Sbjct: 162 AALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSR 221
Query: 381 PL 382
+
Sbjct: 222 QI 223
Score = 119 (46.9 bits), Expect = 7.7e-09, Sum P(2) = 7.7e-09
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 20 AGASGNQFLTTS---LYVGDLDFNVTDSQLYDLFSQVGQVLS----VRVCRDLSTRRSLG 72
A A+G + T+S ++VGDL VTD+ L+D FS S RV D T RS G
Sbjct: 135 AYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRG 194
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIR 102
+G+V++ N DA A++ +N ++++ IR
Sbjct: 195 FGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
Score = 91 (37.1 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266
+F V+V NL T DL ++F Y T+ + V+ + K FGFV + D+AA A+
Sbjct: 271 QFTTVYVGNLSPEVTQLDLHRLF--Y-TLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAI 327
Query: 267 EALNGKKF 274
+ N + F
Sbjct: 328 QMGNAQPF 335
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 168 (64.2 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 51/191 (26%), Positives = 90/191 (47%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKS-KCFGFVNFENADD---AAKAV 266
+FV L S + L+++F + G + V+ + K+ + FG+V F +D A K +
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Query: 267 EALNGKKFD---DREWYVGKAQ--KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGD 321
G K + ++ K++ +K+E + K + + + DK L I+NL
Sbjct: 66 TTFEGCKINVTIAKKKLKNKSKETRKNENSESPKKEPKHKKAKVADK--KARLIIRNLSF 123
Query: 322 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381
++ LK +F+ +GT+ + R P G +G F+ F EA +AL N K I +
Sbjct: 124 KCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKGRT 183
Query: 382 LYV--AVAQRK 390
+ V AVA+ K
Sbjct: 184 VAVDWAVAKDK 194
Score = 149 (57.5 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 39/138 (28%), Positives = 68/138 (49%)
Query: 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVN 255
K ++ VA K + ++NL +++DLK +F YGT+ + R DGK + F F+
Sbjct: 103 KHKKAKVADKKA--RLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQ 160
Query: 256 FENADDAAKAVEALNGKKFDDR----EWYVGKAQKKSEREQELKG---QFEQAMKETVDK 308
F+N +A KA++ N K+ R +W V K + K + + G E+ KE+ K
Sbjct: 161 FKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHTSVSGGKKSSERKPKESSKK 220
Query: 309 FQGLNLYIKNLGDSIDDE 326
+ +++ D DD+
Sbjct: 221 SCRVEEQVEDDDDDEDDD 238
Score = 99 (39.9 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 30/101 (29%), Positives = 51/101 (50%)
Query: 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 365
D +G ++I+NL ++E L E+ +FG + +++ P + SKG F F T E A
Sbjct: 320 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAA 379
Query: 366 SRALA------EMNGKMIVSKPLYVAVAQRKEERRARLQAQ 400
+ LA E G + + L V +A ++E A+LQ +
Sbjct: 380 QKCLAAASPETEGGGLKLDGRQLKVDLAVTRDEA-AKLQTK 419
Score = 94 (38.1 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL-D 89
+L+VG L + QL +LFSQVG V V + ++ G+GYV ++ D RAL +
Sbjct: 5 TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKE 64
Query: 90 VLNF 93
+ F
Sbjct: 65 ITTF 68
Score = 92 (37.4 bits), Expect = 2.5e-11, Sum P(3) = 2.5e-11
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 97 NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ 156
N++S + H+ + + I+NL L F+ +G +L I G+
Sbjct: 94 NSESPKKEPKHKKAKVADK-KARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGK 152
Query: 157 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 198
+GF F+QF+N A A+ N I + V V + K +
Sbjct: 153 MRGFAFIQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDK 194
Score = 88 (36.0 bits), Expect = 3.5e-10, Sum P(3) = 3.5e-10
Identities = 39/127 (30%), Positives = 55/127 (43%)
Query: 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF-----SEFGT-ITS 340
K ER + LK Q + + + Q L + NL S+DD++L++L E G I
Sbjct: 455 KRERFELLKHQ--KLKNQNIFVSQ-TRLCLHNLPKSVDDKQLRKLLLQATGGEKGVRIKE 511
Query: 341 CKVMRD-------PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 393
C+VMRD G S G FV F E A RAL N P + + E
Sbjct: 512 CRVMRDLKAVHGKMKGQSLGYAFVEFQKHEHALRALRHFNNNPETFGPQKRPIVEFSLED 571
Query: 394 RARLQAQ 400
R +L+ +
Sbjct: 572 RRKLKVK 578
Score = 87 (35.7 bits), Expect = 8.9e-17, Sum P(3) = 8.9e-17
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178
+F+ L S L + FS G + C + T+ GS +GFG+V F E Q A+ ++
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 65
Score = 82 (33.9 bits), Expect = 8.2e-10, Sum P(4) = 8.2e-10
Identities = 33/133 (24%), Positives = 60/133 (45%)
Query: 195 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA-VVMRDGDGKSKCFGF 253
+K++R+ + T+ VF++NL + +E L ++ ++G + +V+ SK F
Sbjct: 311 KKKKRKLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAF 370
Query: 254 VNFENADDAAKAVEALN------GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD 307
F + A K + A + G K D R+ V A R++ K Q ++ K T
Sbjct: 371 AQFVTQEAAQKCLAAASPETEGGGLKLDGRQLKVDLAVT---RDEAAKLQTKKVKKPTGT 427
Query: 308 KFQGLNLYIKNLG 320
+ NLY+ G
Sbjct: 428 R----NLYLAREG 436
Score = 80 (33.2 bits), Expect = 1.1e-06, Sum P(4) = 1.1e-06
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAI 175
+FI+NL + +AL + FG++ +I + SKG F QF +E+AQ +
Sbjct: 327 VFIRNLSFDSEEEALGEVLQQFGDLKYVRIVLHPDTEHSKGCAFAQFVTQEAAQKCL 383
Score = 62 (26.9 bits), Expect = 7.5e-08, Sum P(4) = 7.5e-08
Identities = 26/90 (28%), Positives = 41/90 (45%)
Query: 194 LRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF-----GEYGT-ITSAVVMRD---- 243
L+ Q+ + I + + NL +S D+ L+K+ GE G I VMRD
Sbjct: 462 LKHQKLKNQNIFVSQTRLCLHNLPKSVDDKQLRKLLLQATGGEKGVRIKECRVMRDLKAV 521
Query: 244 -GD--GKSKCFGFVNFENADDAAKAVEALN 270
G G+S + FV F+ + A +A+ N
Sbjct: 522 HGKMKGQSLGYAFVEFQKHEHALRALRHFN 551
Score = 42 (19.8 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 367 RALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 398
R+L +M K + SKP Q K++++ Q
Sbjct: 584 RSLQKMGSKPVTSKPQKEQKEQGKDKQQKAAQ 615
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 133 (51.9 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 251 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 310
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELK 295
NG+ DR +V K KS ++ +
Sbjct: 311 FNGQFLFDRPMHV-KMDDKSVPHEDFR 336
Score = 126 (49.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 250 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 309
Query: 371 EMNGKMIVSKPLYV 384
NG+ + +P++V
Sbjct: 310 MFNGQFLFDRPMHV 323
Score = 122 (48.0 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 296 GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 355
G AMKE + +G ++++NL + +KLKE FS+ G + ++ + +G SKG G
Sbjct: 524 GPMGGAMKERLGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCG 581
Query: 356 FVAFSTPEEASRALAEMNGKMIVSKPLYV 384
V F +PE A +A MNG I + + V
Sbjct: 582 TVRFDSPESAEKACRIMNGIKISGREIDV 610
Score = 121 (47.7 bits), Expect = 8.1e-12, Sum P(2) = 8.1e-12
Identities = 39/125 (31%), Positives = 55/125 (44%)
Query: 68 RRSLGYGYVNYANPADAARALDVLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNL 125
RR+L G +A A ++N P +NN +I + R T IF+ NL
Sbjct: 201 RRALQRGGGQFAGGHGPDVAPGLMNLPPSIVNNPNIPPEVISNLQAGRLGST--IFVANL 258
Query: 126 DKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 185
D + K L + FS G + I D G+S+G G V FE A AI NG + D
Sbjct: 259 DFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFD 318
Query: 186 KQVFV 190
+ + V
Sbjct: 319 RPMHV 323
Score = 119 (46.9 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 113 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 533 RLGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 591
Query: 172 QNAIDKLNGMLINDKQVFV 190
+ A +NG+ I+ +++ V
Sbjct: 592 EKACRIMNGIKISGREIDV 610
Score = 113 (44.8 bits), Expect = 6.9e-11, Sum P(2) = 6.9e-11
Identities = 27/73 (36%), Positives = 41/73 (56%)
Query: 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKA 265
+K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A KA
Sbjct: 536 SKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAEKA 594
Query: 266 VEALNGKKFDDRE 278
+NG K RE
Sbjct: 595 CRIMNGIKISGRE 607
Score = 96 (38.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 36/136 (26%), Positives = 66/136 (48%)
Query: 150 ATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV-FVGHFLR----KQERETVA 203
AT+ G G + G V+ +N E+A+ + K + +G+ R +E+ T +
Sbjct: 53 ATESGGGSANG---VKMDNDETAKEEKAPVKEKHAKPKAIPSLGNKNRFHPYSKEKSTGS 109
Query: 204 IKTKF---NNVFVKNLDESTTDEDLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENA 259
+ K N VF+ N+ + +K + E G +T + +D +GKS+ G V F++
Sbjct: 110 AEKKAINRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDE 169
Query: 260 DDAAKAVEALNGKKFD 275
+ KA+E +N K+D
Sbjct: 170 EFVKKALETMN--KYD 183
Score = 84 (34.6 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 120 IFIKNLDKSIDHKALHDTF-SSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
+FI N+ + +A+ D G + ++ D G+S+G G V+F+++E + A++ +
Sbjct: 120 VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 179
Query: 179 N 179
N
Sbjct: 180 N 180
Score = 76 (31.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
L ++++V +LDF V +L ++FS G V + D +S G G V + +A +A
Sbjct: 249 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKED-KDGKSRGMGTVTFEQAIEAVQA 307
Query: 88 LDVLN 92
+ + N
Sbjct: 308 ISMFN 312
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 176 (67.0 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 55/217 (25%), Positives = 102/217 (47%)
Query: 206 TKFNNVFVKNLDESTTDEDLK---KIFGEYGTITSAVVMRDGDGKSK--C-FGFVNFENA 259
T+F V++KNL+ TT+E L K +Y + A + + C FGF+ F +
Sbjct: 677 TQF--VYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSK 734
Query: 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE--QAMKETVDKFQGL----- 312
A + ++ LNG D E + + K QE+ + E + K+++ G
Sbjct: 735 QGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKRRELPENSKQSIKSNGGQPNKPS 794
Query: 313 -NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 371
+ IKNL +++++LF+ +G I S ++ + P+G +G GFV F T EEA A+
Sbjct: 795 SKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAMEA 854
Query: 372 MNGKMIVSKPLYVAVAQRK---EERRARLQAQFSQMR 405
+ + L + A++ +E R + + +++
Sbjct: 855 LGNSHFYGRHLVLQYAEQDKNIDELREKANLDYEKIK 891
Score = 138 (53.6 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 52/182 (28%), Positives = 86/182 (47%)
Query: 214 KNLDESTTDED-LKKIFGEYGTI---TSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269
K D S +D D L K I ++V RD + +S+ N EN D K +
Sbjct: 254 KKHDSSVSDLDWLSKFRSNNDEIIEKNQSIVYRDEE-ESEEEDVNNKENKKDKMKIDDNK 312
Query: 270 NGKKFDDREWYVGKAQKKSER---EQELKG--QFEQAM-KETVDKFQGLNLYIKNLGDSI 323
KK ++ K ++ E ++K FE KE D + ++++NL S
Sbjct: 313 ENKKEKKKDKKKNKKDNDNDGDDDESKIKPIKYFEHDYTKEDEDVGESGRIFVRNLSYST 372
Query: 324 DDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382
+E L+++FS+FG I+ + D S SKG F+ + PE A +AL +M+GK+ + +
Sbjct: 373 KEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKVFQGRLI 432
Query: 383 YV 384
+V
Sbjct: 433 HV 434
Score = 122 (48.0 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+ VK L + TD+ K+ F ++GT+T A +++ DGKS+ FGF+ F + + +AK +LN
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGF-STEQSAKNALSLN 63
Query: 271 GKKFDDREWYVGKAQKKSE 289
G D + V A SE
Sbjct: 64 GTFIDTSKIVVETATVASE 82
Score = 121 (47.7 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGK-SKCFGFVNFENADDAAKAVEAL 269
+FV+NL ST +EDL+K+F ++G I+ + D D K SK F+ + ++A +A+ +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 270 NGKKFDDREWYV--GKA 284
+GK F R +V GKA
Sbjct: 423 DGKVFQGRLIHVLPGKA 439
Score = 117 (46.2 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 34/109 (31%), Positives = 56/109 (51%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
I +K L K + K + F FG + KI G+S+ FGF+ F ++SA+NA+ LN
Sbjct: 6 ICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGFSTEQSAKNALS-LN 63
Query: 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
G I+ ++ V E TVA +T N + K S++++ L ++
Sbjct: 64 GTFIDTSKIVV-------ETATVASETTENRPWSKYSIGSSSNKRLTEM 105
Score = 109 (43.4 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFV 163
Y+ D + +SG IF++NL S + L FS FG I I D S +SKG F+
Sbjct: 350 YTKEDEDVGESG--RIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFI 407
Query: 164 QFENKESAQNAIDKLNGMLINDKQVFV 190
+ E+A A++ ++G + + + V
Sbjct: 408 LYLIPENAVQALNDMDGKVFQGRLIHV 434
Score = 109 (43.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 29/104 (27%), Positives = 53/104 (50%)
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 176
+ I IKNL K + F+++G I S +I +G +GFGFV+F +E A+NA++
Sbjct: 794 SSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGFGFVEFLTEEEAKNAME 853
Query: 177 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDEST 220
L + + + + +Q++ ++ K N + K + ST
Sbjct: 854 ALGNSHFYGRHLVLQY--AEQDKNIDELREKANLDYEK-IKNST 894
Score = 91 (37.1 bits), Expect = 3.7e-14, Sum P(2) = 3.7e-14
Identities = 43/222 (19%), Positives = 94/222 (42%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++V +L ++ + L +FS+ G++ + + D +++S G ++ Y P +A +AL+ +
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDM 422
Query: 92 NFTPLNNKSIRIMYSHRDP----SIRKSGTGNIFIKNLD--KSIDHKALHDTFSSFGNIL 145
+ + I ++ P S K N K+ + T S N
Sbjct: 423 DGKVFQGRLIHVLPGKAAPAKQFSENKDNNNNGAEGGSSSFKAEKEQKQKTTSGSTHNWN 482
Query: 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF--VGHFLRKQER--ET 201
+ + +D S + + + N +D M + + V FL Q +
Sbjct: 483 ALFMRSDAIVSSLAERYKMTQGQLLDPNQMDLAVRMTLMETHVINETKKFLEDQGVIIQD 542
Query: 202 VAIK-TKFNN--VFVKNLDESTTDEDLKKIFGEYGTITSAVV 240
+ K +K +N + VKN+ T + +L ++F ++G ++ V+
Sbjct: 543 IGNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGELSRVVL 584
Score = 77 (32.2 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 40/170 (23%), Positives = 77/170 (45%)
Query: 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN 80
G G++ T L V ++ F + +L++LFS+ G+ LS RV LS R++ + Y +
Sbjct: 544 GNKGSKRSNTVLLVKNIPFKTQEHELHELFSKFGE-LS-RVV--LSPARTIAL--IEYIH 597
Query: 81 PADAARALDVLNFTPLNNKSIRIMYSHRD----PS----IRKSGTGNIFIKNLDKSIDHK 132
P +A L ++ ++ + + ++ P+ I+KS K+ D S D K
Sbjct: 598 PNEAKVGFKNLAYSKFHHVPLYLEWAPEGVFKLPAPPKEIKKSEKSE---KSSDSSNDKK 654
Query: 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFEN-KESAQNAIDKLNGM 181
+ T + + K TD + Q F +++ N K + + + K +
Sbjct: 655 EVESTTKTAATTTTTKKGTDNNTQ---FVYIKNLNWKTTNETLVGKFKSL 701
Score = 64 (27.6 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 16/86 (18%), Positives = 41/86 (47%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVC-----RDLSTRRSLGYGYVNYANPAD 83
T +Y+ +L++ T+ L F + ++V + ++ S R G+G++ +++
Sbjct: 677 TQFVYIKNLNWKTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQG 736
Query: 84 AARALDVLNFTPLNNKSIRIMYSHRD 109
A + LN + ++ I + S ++
Sbjct: 737 AYECIKKLNGSSIDGYEISLKLSDKN 762
Score = 62 (26.9 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 18/71 (25%), Positives = 33/71 (46%)
Query: 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373
L +KN+ + +L ELFS+FG ++ +V+ P+ + + + P EA +
Sbjct: 555 LLVKNIPFKTQEHELHELFSKFGELS--RVVLSPA---RTIALIEYIHPNEAKVGFKNLA 609
Query: 374 GKMIVSKPLYV 384
PLY+
Sbjct: 610 YSKFHHVPLYL 620
Score = 57 (25.1 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
T + V L ++TD + + F + G V ++ + +S +G++ ++ A AL
Sbjct: 4 TRICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIK--KDGKSRLFGFIGFSTEQSAKNALS 61
Query: 90 VLNFTPLNNKSI 101
LN T ++ I
Sbjct: 62 -LNGTFIDTSKI 72
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 235 (87.8 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 54/174 (31%), Positives = 93/174 (53%)
Query: 17 GVAAGASGNQFL-------TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
G++ G+ G+ L T+L V L ++TD +LY LF +G + + R+ RD T
Sbjct: 105 GLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGY 164
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI 129
S GY +V++ + D+ RA+ VLN + NK +++ Y+ P N+++ NL ++I
Sbjct: 165 SFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTI 222
Query: 130 DHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGML 182
L F +G+I+ I D +G+ +G FV++ +E AQ AI LN ++
Sbjct: 223 TDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 276
Score = 213 (80.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 53/164 (32%), Positives = 91/164 (55%)
Query: 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 167
DP R S T N+ + L + + + L+ F + G I +C+I D +G S G+ FV F +
Sbjct: 119 DP--RASNT-NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTS 175
Query: 168 KESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKK 227
+ +Q AI LNG+ + +K++ V + + E++ K N++V NL + TD+ L
Sbjct: 176 EMDSQRAIKVLNGITVRNKRLKVSY--ARPGGESI----KDTNLYVTNLPRTITDDQLDT 229
Query: 228 IFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALN 270
IFG+YG+I ++RD G+ + FV + ++A +A+ ALN
Sbjct: 230 IFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
Score = 131 (51.2 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-S 348
R + LK + + E++ + NLY+ NL +I D++L +F ++G+I ++RD +
Sbjct: 192 RNKRLKVSYARPGGESI---KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLT 248
Query: 349 GISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAVAQRKEERRARLQAQFSQM 404
G +G FV ++ EEA A++ +N + S+PL V +A+ E +A+ SQM
Sbjct: 249 GRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLAE--EHGKAKAAHFMSQM 304
Score = 118 (46.6 bits), Expect = 0.00054, P = 0.00054
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
NL + L + D +L LF G I +C++MRD +G S G FV F++ ++ RA+
Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185
Query: 372 MNGKMIVSKPLYVAVAQ 388
+NG + +K L V+ A+
Sbjct: 186 LNGITVRNKRLKVSYAR 202
Score = 96 (38.9 bits), Expect = 5.5e-11, Sum P(2) = 5.5e-11
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
N+ V L + TD +L +F G I + +MRD G S + FV+F + D+ +A++
Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKV 185
Query: 269 LNGKKFDDREWYVGKAQKKSE 289
LNG ++ V A+ E
Sbjct: 186 LNGITVRNKRLKVSYARPGGE 206
>MGI|MGI:97286 [details] [associations]
symbol:Ncl "nucleolin" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
"cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
IntAct:P09405 STRING:P09405 PhosphoSite:P09405
REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
GermOnline:ENSMUSG00000026234 Uniprot:P09405
Length = 707
Score = 234 (87.4 bits), Expect = 3.4e-16, P = 3.4e-16
Identities = 73/266 (27%), Positives = 130/266 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVR-VCRDLSTRRSLGYGYVNYANPADAARALD 89
+L +L FN+T+ +L ++F + +R V +D +S G Y+ + + ADA + L+
Sbjct: 396 TLLAKNLSFNITEDELKEVFEDA---MEIRLVSQD---GKSKGIAYIEFKSEADAEKNLE 449
Query: 90 VLNFTPLNNKSIRIMYS----HRDPSIRKSGTGNIFIKNLDKS-IDHKALHDTFSS-FGN 143
++ +S+ + Y+ R K+ T + K L S + + A +T F
Sbjct: 450 EKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEK 509
Query: 144 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 203
K+ + G+ KG+ F++F + E A+ A++ N M I + + + L+ +
Sbjct: 510 ATFIKVPQNPHGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGSNSRSQP 567
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
KT +FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA
Sbjct: 568 SKT----LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAK 621
Query: 264 KAVEALNGKKFDDREWYVGKAQKKSE 289
A EA+ + D + + A+ K E
Sbjct: 622 AAKEAMEDGEIDGNKVTLDWAKPKGE 647
Score = 209 (78.6 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 75/262 (28%), Positives = 132/262 (50%)
Query: 119 NIFIKNLD--KSIDHK--ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174
N+FI NL+ KS++ A+ + F+ N L+ + +G ++ FG+V FE+ E + A
Sbjct: 310 NLFIGNLNPNKSVNELKFAISELFAK--NDLA--VVDVRTGTNRKFGYVDFESAEDLEKA 365
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
++ L G+ + ++ + + ++ A +T + KNL + T+++LK++F +
Sbjct: 366 LE-LTGLKVFGNEIKLEKPKGRDSKKVRAART----LLAKNLSFNITEDELKEVFEDAME 420
Query: 235 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 294
I +V +DG KSK ++ F++ DA K +E G + D R + +K +R QE
Sbjct: 421 IR--LVSQDG--KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QER 475
Query: 295 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 354
G K + + L + NL S E L+E+F + T KV ++P G KG
Sbjct: 476 TG------KTSTWSGESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGY 526
Query: 355 GFVAFSTPEEASRALAEMNGKM 376
F+ F++ E+A AL N KM
Sbjct: 527 AFIEFASFEDAKEALNSCN-KM 547
Score = 204 (76.9 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 72/313 (23%), Positives = 148/313 (47%)
Query: 11 QMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
Q P G++ T +L++G+L+ N + ++L S++ + V D+ T
Sbjct: 289 QKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGT 347
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI 129
+ +GYV++ + D +AL++ N+ I++ S + + KNL +I
Sbjct: 348 NRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKGRDSKKVRAARTLLAKNLSFNI 406
Query: 130 DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV- 188
L + F + + ++ + G+SKG +++F+++ A+ +++ G I+ + V
Sbjct: 407 TEDELKEVFE---DAMEIRLVSQ-DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 462
Query: 189 --FVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 244
+ G ++QER +T + + + NL S T E L+++F E T V ++
Sbjct: 463 LYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVF-EKATFIK--VPQNP 519
Query: 245 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE-----LKGQFE 299
GK K + F+ F + +DA +A+ + N + + R + + Q + R Q +KG E
Sbjct: 520 HGKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL-ELQGSNSRSQPSKTLFVKGLSE 578
Query: 300 QAMKETV-DKFQG 311
+ET+ + F+G
Sbjct: 579 DTTEETLKESFEG 591
Score = 89 (36.4 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373
L++K L + +E LKE F G++ + V +G SKG GFV F++ E+A A M
Sbjct: 571 LFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 628
Query: 374 GKMIVSKPLYVAVAQRKEE 392
I + + A+ K E
Sbjct: 629 DGEIDGNKVTLDWAKPKGE 647
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 237 (88.5 bits), Expect = 2.7e-17, P = 2.7e-17
Identities = 70/270 (25%), Positives = 130/270 (48%)
Query: 115 SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQN 173
S +++I +L + +D + F+ G S K+ + +GQS+G+GF++F + A+
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 174 AIDKLNGM-LINDKQVFVGHFLRKQERETVAIKTKF--NNVFVKNLDESTTDEDLKKIFG 230
+ NG + + +Q F ++ + E +T+ + +FV +L TD L F
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEK-RFQTEGPDHTIFVGDLAPEVTDYMLSDTFK 175
Query: 231 E-YGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 288
YG++ A V+ D G+SK +GFV F + ++ +A+ +NG+ R +G A K+
Sbjct: 176 NVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKN 235
Query: 289 ERE-QELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347
Q Q Q + +++ L ++ D++LK +F +FG + K+ P
Sbjct: 236 ALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---P 292
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMI 377
G K GFV ++ A AL+ +NG +
Sbjct: 293 PG--KRCGFVQYANKASAEHALSVLNGTQL 320
Score = 213 (80.0 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 72/295 (24%), Positives = 135/295 (45%)
Query: 1 MAQIQVQHQAQMS----GPN--GVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVG 54
M Q Q Q Q Q+S G + G+ + G+ SL++GDL + ++ + +F+Q G
Sbjct: 25 MQQQQQQQQMQLSAAPLGQHQYGIGSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSG 84
Query: 55 QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL--NNKSIRIMYSHRDPSI 112
+ S +V R+ T +S GYG++ + + + A R L N P+ ++ R+ ++
Sbjct: 85 EATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGE 144
Query: 113 RKSGT-G---NIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGS-GQSKGFGFVQFE 166
++ T G IF+ +L + L DTF + +G++ K+ D + G+SKG+GFV+F
Sbjct: 145 KRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
Query: 167 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLK 226
++ A+ ++NG + + + +G K + N N ++ +
Sbjct: 205 DENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQP--AMYQNTQGANAGDNDPNNTTI 262
Query: 227 KIFGEYGTITS----AVVMRDGD------GKSKCFGFVNFENADDAAKAVEALNG 271
+ G +T ++ + G+ K GFV + N A A+ LNG
Sbjct: 263 FVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNG 317
Score = 179 (68.1 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 55/176 (31%), Positives = 82/176 (46%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQV-GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89
+++VGDL VTD L D F V G V +V D +T RS GYG+V +A+ + RA+
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 90 VLNFTPLNNKSIRI--------------MYSHRDPSIRKSGTGN---IFIKNLDKSIDHK 132
+N + + +RI MY + + N IF+ LD ++
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDD 274
Query: 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
L F FG +L KI K GFVQ+ NK SA++A+ LNG + + +
Sbjct: 275 ELKSIFGQFGELLHVKIPP-----GKRCGFVQYANKASAEHALSVLNGTQLGGQSI 325
Score = 160 (61.4 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 47/184 (25%), Positives = 89/184 (48%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
++++ +L + + + +F + G TSA V+R+ G+S+ +GF+ F + A + ++
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKL 328
NG E + Q G+ ++ E D +++ +L + D L
Sbjct: 121 YNGAPMPSTEQTF-----RLNWAQAGAGE-KRFQTEGPDH----TIFVGDLAPEVTDYML 170
Query: 329 KELFSE-FGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386
+ F +G++ KV+ D +G SKG GFV F+ E RA+ EMNG+ ++P+ +
Sbjct: 171 SDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGP 230
Query: 387 AQRK 390
A K
Sbjct: 231 AANK 234
Score = 152 (58.6 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 39/96 (40%), Positives = 54/96 (56%)
Query: 16 NGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGY 75
N A A N T+++VG LD NVTD +L +F Q G++L V++ +R G+
Sbjct: 246 NTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPG---KRC---GF 299
Query: 76 VNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS 111
V YAN A A AL VLN T L +SIR+ + R P+
Sbjct: 300 VQYANKASAEHALSVLNGTQLGGQSIRLSWG-RSPN 334
>UNIPROTKB|E5RHG7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00980706
ProteinModelPortal:E5RHG7 SMR:E5RHG7 Ensembl:ENST00000522720
ArrayExpress:E5RHG7 Bgee:E5RHG7 Uniprot:E5RHG7
Length = 75
Score = 220 (82.5 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 42/71 (59%), Positives = 52/71 (73%)
Query: 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPA 82
S + SLYVGDL +VT++ LY+ FS G +LS+RVCRD+ TRRSLGY YVN+ PA
Sbjct: 4 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 83 DAARALDVLNF 93
DA RALD +NF
Sbjct: 64 DAERALDTMNF 74
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 213 (80.0 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 49/145 (33%), Positives = 80/145 (55%)
Query: 57 LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSG 116
++V + +D T+ GYG+V + + DA + ++N L K IR+ + G
Sbjct: 59 VNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVG 118
Query: 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATDG-SGQSKGFGFVQFENKESAQNA 174
NIFI NLD +D K L+DTFS+FG IL KI D +G+SK F F+ F + E++ A
Sbjct: 119 A-NIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAA 177
Query: 175 IDKLNGMLINDKQVFVGHFLRKQER 199
+D +NG + ++ + V + +K +
Sbjct: 178 MDAMNGQYLCNRPISVSYAFKKDHK 202
Score = 154 (59.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 42/135 (31%), Positives = 69/135 (51%)
Query: 158 KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLD 217
+G+GFV+F ++E A I +N + + K + V Q+ V N+F+ NLD
Sbjct: 73 QGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVGA-----NIFIGNLD 127
Query: 218 ESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFD 275
++ L F +G I +MRD + GKSK F F+NF + + + A++A+NG+
Sbjct: 128 VEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLC 187
Query: 276 DREWYVGKAQKKSER 290
+R V A KK +
Sbjct: 188 NRPISVSYAFKKDHK 202
Score = 154 (59.3 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 45/148 (30%), Positives = 77/148 (52%)
Query: 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 310
+GFV F + +DA ++ +N K + V KA A ++ +D
Sbjct: 75 YGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKAS---------------AHQKNLDV-- 117
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPEEASRA 368
G N++I NL +D++ L + FS FG I K+MRDP +G SK F+ F++ E + A
Sbjct: 118 GANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAA 177
Query: 369 LAEMNGKMIVSKPLYVAVAQRKEERRAR 396
+ MNG+ + ++P+ V+ A +K+ + R
Sbjct: 178 MDAMNGQYLCNRPISVSYAFKKDHKGER 205
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 30/109 (27%), Positives = 59/109 (54%)
Query: 4 IQVQHQAQMSG-PNGV--AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSV- 59
I++ + ++ G P V A+ N + ++++G+LD V + LYD FS G +L
Sbjct: 90 IKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTP 149
Query: 60 RVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108
++ RD T +S + ++N+A+ + A+D +N L N+ I + Y+ +
Sbjct: 150 KIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFK 198
Score = 65 (27.9 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 18 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV 56
+AAG + ++Y G LD V+++ L++LF Q G V
Sbjct: 1 MAAGPIAERNQDATIYAGGLDDKVSETLLWELFVQAGPV 39
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 239 (89.2 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 55/166 (33%), Positives = 90/166 (54%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENKESAQNAIDK 177
++F+ +L K + ++ L TF+ FG + K+ D Q SKG+GFV F NK++A+NAI
Sbjct: 226 HVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAG 285
Query: 178 LNGMLINDKQVFVGHFLRK---QERETVAIKTKFNN-------VFVKNLDESTTDEDLKK 227
+NG I + V RK + R+ + + FN+ V+V N+ + TTD DL+
Sbjct: 286 MNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRD 345
Query: 228 IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK 273
+F YG I + K++ + FV +E + A KA+ +NGK+
Sbjct: 346 LFSTYGDIAEVRIF-----KTQRYAFVRYEKKECATKAIMEMNGKE 386
Score = 230 (86.0 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 60/198 (30%), Positives = 99/198 (50%)
Query: 179 NGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSA 238
N +++ + V H + E +K +VFV +L + ++E LK F ++G ++ A
Sbjct: 197 NAIVLQESAVL--HSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEA 254
Query: 239 VVMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQ 297
V+RD KSK +GFV+F N +A A+ +NGK R A +K+ E K
Sbjct: 255 KVIRDVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLT 314
Query: 298 FEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357
FEQ T K ++Y+ N+ D L++LFS +G I ++ + ++ FV
Sbjct: 315 FEQVFNST--KADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFK-----TQRYAFV 367
Query: 358 AFSTPEEASRALAEMNGK 375
+ E A++A+ EMNGK
Sbjct: 368 RYEKKECATKAIMEMNGK 385
Score = 180 (68.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 46/171 (26%), Positives = 92/171 (53%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +V++ L F++ G+V +V RD+ T++S GYG+V++ N +A A+ +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 92 NFTPLNNKSIRIMYS-------HRDP-------SIRKSGTGNIFIKNLDKSIDHKALHDT 137
N + +++R ++ +RD + K+ ++++ N+ + L D
Sbjct: 287 NGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDL 346
Query: 138 FSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
FS++G+I +I +++ + FV++E KE A AI ++NG + QV
Sbjct: 347 FSTYGDIAEVRIF-----KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQV 392
Score = 154 (59.3 bits), Expect = 9.1e-08, P = 9.1e-08
Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 299 EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFV 357
E M+ +D + ++++ +L + +E LK F++FG ++ KV+RD + SKG GFV
Sbjct: 212 EPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFV 271
Query: 358 AFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQM 404
+F + A A+A MNGK I + + A RK R + F Q+
Sbjct: 272 SFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQV 318
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 217 (81.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 54/170 (31%), Positives = 87/170 (51%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+LYVG+LD +V++ L LFS +G V S ++ R+ Y ++ Y+N A AL
Sbjct: 8 TLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP---YAFIEYSNYQAATTALTA 64
Query: 91 LNFTPLNNKSIRIMYSH---RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
+N K I++ ++ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 65 MNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEISNC 124
Query: 148 KIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196
+I D + +SKG+ FV F K A+NAI +NG I + + RK
Sbjct: 125 RIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK 174
Score = 188 (71.2 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 51/181 (28%), Positives = 91/181 (50%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NLD S +++ L +F G + S ++R+ G + F+ + N A A+ A+N
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIRE-PGNDP-YAFIEYSNYQAATTALTAMN 66
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
+ F ++E V A + K + ++++ +L I+ E L+E
Sbjct: 67 KRLFLEKEIKVNWATSPGNQP-----------KTDISSHH--HIFVGDLSPEIETETLRE 113
Query: 331 LFSEFGTITSCKVMRDPSGI-SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F+ FG I++C+++RDP + SKG FV+F EA A+ MNG+ I S+ + + R
Sbjct: 114 AFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTR 173
Query: 390 K 390
K
Sbjct: 174 K 174
Score = 183 (69.5 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+++ NLD S+ L FS+ G + SCKI + + F+++ N ++A A+ +N
Sbjct: 9 LYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDP--YAFIEYSNYQAATTALTAMN 66
Query: 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 239
L +K++ V + I + +++FV +L E L++ F +G I++
Sbjct: 67 KRLFLEKEIKVNWATSPGNQPKTDISSH-HHIFVGDLSPEIETETLREAFAPFGEISNCR 125
Query: 240 VMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDR 277
++RD KSK + FV+F +A A++A+NG+ R
Sbjct: 126 IVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSR 164
Score = 124 (48.7 bits), Expect = 0.00019, P = 0.00019
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 306 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 365
+D+ Q LY+ NL S+ ++ L LFS G + SCK++R+P + F+ +S + A
Sbjct: 1 MDESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPG--NDPYAFIEYSNYQAA 58
Query: 366 SRALAEMNGKMIVSKPLYV 384
+ AL MN ++ + K + V
Sbjct: 59 TTALTAMNKRLFLEKEIKV 77
Score = 67 (28.6 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 323 IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL-----AEMNGKMI 377
I D+ + + F +FG I +V +D KG F+ F T E A+ A+ +E++G ++
Sbjct: 233 ISDDLMHKHFVQFGPIQDVRVFKD-----KGFSFIKFVTKEAAAHAIEHTHNSEVHGNLV 287
Score = 55 (24.4 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 221 TDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267
+D+ + K F ++G I V +D K F F+ F + AA A+E
Sbjct: 234 SDDLMHKHFVQFGPIQDVRVFKD-----KGFSFIKFVTKEAAAHAIE 275
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 132 (51.5 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 31/87 (35%), Positives = 47/87 (54%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268
+ +FV NLD + LK++F GT+ A + D DGKS+ G V FE A +A +A+
Sbjct: 182 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 241
Query: 269 LNGKKFDDREWYVGKAQKKSEREQELK 295
NG+ DR +V K KS ++ +
Sbjct: 242 FNGQFLFDRPMHV-KMDDKSVPHEDYR 267
Score = 126 (49.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370
G +++ NL + +KLKE+FS GT+ + D G S+G G V F EA +A++
Sbjct: 181 GSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAIS 240
Query: 371 EMNGKMIVSKPLYV 384
NG+ + +P++V
Sbjct: 241 MFNGQFLFDRPMHV 254
Score = 118 (46.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 27/79 (34%), Positives = 49/79 (62%)
Query: 113 RKSGTGN-IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171
R GN IF++NL + + L + FS G+++ +I + +G+SKG G V+F++ ESA
Sbjct: 409 RIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESA 467
Query: 172 QNAIDKLNGMLINDKQVFV 190
+ A +NG+ I+ +++ V
Sbjct: 468 EKACRIMNGIKISGREIDV 486
Score = 117 (46.2 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
Identities = 34/103 (33%), Positives = 47/103 (45%)
Query: 90 VLNFTP--LNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147
++N P LNN +I + R T IF+ NLD + K L + FS G +
Sbjct: 154 LMNLPPSILNNPNIPPEVISNLQAGRLGST--IFVANLDFKVGWKKLKEVFSIAGTVKRA 211
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
I D G+S+G G V FE A AI NG + D+ + V
Sbjct: 212 DIKEDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 254
Score = 116 (45.9 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 28/91 (30%), Positives = 49/91 (53%)
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 353
L G +++ + +G ++++NL + +KLKE FS+ G + ++ + +G SKG
Sbjct: 398 LSGPMGSGIRDRIGS-KGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKG 455
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384
G V F +PE A +A MNG I + + V
Sbjct: 456 CGTVRFDSPESAEKACRIMNGIKISGREIDV 486
Score = 115 (45.5 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
I +K N +FV+NL T + LK+ F + G + A + + +GKSK G V F++ + A
Sbjct: 410 IGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKME-NGKSKGCGTVRFDSPESAE 468
Query: 264 KAVEALNGKKFDDRE 278
KA +NG K RE
Sbjct: 469 KACRIMNGIKISGRE 483
Score = 95 (38.5 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 166 ENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKT--KFNNVFVKNLDESTTDE 223
EN ES + +L +K+ H K + K N VF+ N+ +
Sbjct: 4 ENDESVKEDKSELKEKSSGNKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQ 63
Query: 224 DLKKIFGE-YGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275
+K + E G +T + +D +GKS+ G V F++ + KA+E +N K+D
Sbjct: 64 AIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMN--KYD 114
Score = 85 (35.0 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 97 NNKSIRIMYSHRDPSIRKSGTGN--------IFIKNLDKSIDHKALHDTF-SSFGNILSC 147
N K+ R +D + SGTG +FI N+ + +A+ D G +
Sbjct: 23 NKKANRFHPYSKD---KNSGTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYV 79
Query: 148 KIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
++ D G+S+G G V+F+++E + A++ +N
Sbjct: 80 ELFKDAEGKSRGCGVVEFKDEEFVKKALETMN 111
Score = 76 (31.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87
L ++++V +LDF V +L ++FS G V + D +S G G V + +A +A
Sbjct: 180 LGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKED-KDGKSRGMGTVTFEQAIEAVQA 238
Query: 88 LDVLN 92
+ + N
Sbjct: 239 ISMFN 243
Score = 38 (18.4 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 468 GAGSMLPVPVDMGAGIPRRDASVGQPMP 495
G G M V MG G+ R +S + P
Sbjct: 354 GMGGMNSVTGGMGMGLDRMSSSFDRMGP 381
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 160 (61.4 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 51/171 (29%), Positives = 80/171 (46%)
Query: 16 NGVAAGASGNQFLTTSLYVGDL--DFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY 73
N V+ S ++VG + +N TD + LF + G V S + RD ST+ S G
Sbjct: 41 NDVSPSPSEPDTDAIKMFVGQIPRQWNETDCRR--LFEKYGSVFSCNILRDKSTQASKGC 98
Query: 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN-----IFIKNLDKS 128
+V + + DA A L+ N K I M H ++ + T N +FI L K
Sbjct: 99 CFVTFYHRKDAIEAQGALH----NIKVIEGM--HHPVQMKPADTENRNERKLFIGQLSKK 152
Query: 129 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179
+ + L + F+ FG+I C + D G+S+G FV F N+ A A +++
Sbjct: 153 HNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 157 (60.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 47/162 (29%), Positives = 74/162 (45%)
Query: 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQFENK 168
PS + +F+ + + + F +G++ SC I D S Q SKG FV F ++
Sbjct: 47 PSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHR 106
Query: 169 ESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKI 228
+ A A G L N K V G Q + +F+ L + +E+L++I
Sbjct: 107 KDAIEA----QGALHNIK-VIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREI 161
Query: 229 FGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
F ++G I V+RD DGKS+ FV F N A A + ++
Sbjct: 162 FAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMH 203
Score = 140 (54.3 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
N+FI +L + L +TF+ FG ILS K+ D + SK FGFV +EN +SA NAI
Sbjct: 504 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 563
Query: 178 LNGMLINDKQVFV 190
+NG I K++ V
Sbjct: 564 MNGFQIGSKRLKV 576
Score = 132 (51.5 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 32/82 (39%), Positives = 44/82 (53%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEA 268
N+F+ +L + D DL F +G I SA V D SKCFGFV++ENA A A+ A
Sbjct: 504 NLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISA 563
Query: 269 LNGKKFDDREWYVGKAQKKSER 290
+NG + + K Q K +R
Sbjct: 564 MNGFQIGSKRL---KVQLKVDR 582
Score = 130 (50.8 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 49/198 (24%), Positives = 90/198 (45%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+FV + + D +++F +YG++ S ++RD KS A+K +
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRD---KST-----------QASKGCCFVT 102
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLN---LYIKNLGDSIDDEK 327
F R+ + +AQ + ++G + D + N L+I L ++E
Sbjct: 103 ---FYHRKDAI-EAQGALHNIKVIEGMHHPVQMKPADT-ENRNERKLFIGQLSKKHNEEN 157
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYV 384
L+E+F++FG I C V+RD G S+G FV F+ A A EM+ + S PL V
Sbjct: 158 LREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVV 217
Query: 385 AVAQRKEERRARLQAQFS 402
A ++++ + ++ +
Sbjct: 218 KFADTQKDKDVKTKSMIT 235
Score = 119 (46.9 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 30/75 (40%), Positives = 41/75 (54%)
Query: 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRAL 369
G NL+I +L D L F+ FG I S KV D + +SK GFV++ + A+ A+
Sbjct: 502 GANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAI 561
Query: 370 AEMNGKMIVSKPLYV 384
+ MNG I SK L V
Sbjct: 562 SAMNGFQIGSKRLKV 576
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 243 (90.6 bits), Expect = 3.5e-17, P = 3.5e-17
Identities = 74/266 (27%), Positives = 129/266 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVR-VCRDLSTRRSLGYGYVNYANPADAARALD 89
+L +L FN+T+ +L ++F L +R V +D +S G Y+ + + ADA + L+
Sbjct: 395 TLLAKNLSFNITEDELKEVFEDA---LEIRLVSQD---GKSKGIAYIEFKSEADAEKNLE 448
Query: 90 VLNFTPLNNKSIRIMYS----HRDPSIRKSGTGNIFIKNLDKS-IDHKALHDTFSS-FGN 143
++ +S+ + Y+ R K+ T + K L S + + A +T F
Sbjct: 449 EKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK 508
Query: 144 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 203
K+ + G+SKG+ F++F + E A+ A++ N M I + + + L+ A
Sbjct: 509 ATFIKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNA 566
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
+FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA
Sbjct: 567 RSQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAK 624
Query: 264 KAVEALNGKKFDDREWYVGKAQKKSE 289
A EA+ + D + + A+ K E
Sbjct: 625 AAKEAMEDGEIDGNKVTLDWAKPKGE 650
Score = 213 (80.0 bits), Expect = 6.9e-14, P = 6.9e-14
Identities = 77/284 (27%), Positives = 141/284 (49%)
Query: 119 NIFIKNLD--KSI-DHK-ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174
N+FI NL+ KS+ + K A+ + F+ N L+ + +G ++ FG+V FE+ E + A
Sbjct: 309 NLFIGNLNPNKSVAELKVAISEPFAK--NDLA--VVDVRTGTNRKFGYVDFESAEDLEKA 364
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
++ L G+ + ++ + + ++ A +T + KNL + T+++LK++F +
Sbjct: 365 LE-LTGLKVFGNEIKLEKPKGRDSKKVRAART----LLAKNLSFNITEDELKEVFED--A 417
Query: 235 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 294
+ +V +DG KSK ++ F++ DA K +E G + D R + +K +R QE
Sbjct: 418 LEIRLVSQDG--KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QER 474
Query: 295 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 354
G K + + L + NL S +E L+E+F + T KV ++ G SKG
Sbjct: 475 TG------KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGY 525
Query: 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 398
F+ F++ E+A AL N I + + + + + AR Q
Sbjct: 526 AFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQ 569
Score = 202 (76.2 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 73/316 (23%), Positives = 148/316 (46%)
Query: 11 QMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
Q P G++ T +L++G+L+ N + ++L S+ + V D+ T
Sbjct: 288 QKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVV-DVRTGT 346
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI 129
+ +GYV++ + D +AL++ N+ I++ S + + KNL +I
Sbjct: 347 NRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKGRDSKKVRAARTLLAKNLSFNI 405
Query: 130 DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV- 188
L + F + L ++ + G+SKG +++F+++ A+ +++ G I+ + V
Sbjct: 406 TEDELKEVFE---DALEIRLVSQ-DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 461
Query: 189 --FVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 244
+ G ++QER + + + + NL S T+E L+++F E T V ++
Sbjct: 462 LYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVF-EKATFIK--VPQNQ 518
Query: 245 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV------GKAQKKSEREQEL--KG 296
GKSK + F+ F + +DA +A+ + N + + R + G +S+ + L KG
Sbjct: 519 QGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKG 578
Query: 297 QFEQAMKETV-DKFQG 311
E +ET+ + F+G
Sbjct: 579 LSEDTTEETLKESFEG 594
Score = 146 (56.5 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 64/272 (23%), Positives = 120/272 (44%)
Query: 125 LDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
L K++ D F + L ++ + G+SKG +++F+++ A+ +++ G I
Sbjct: 397 LAKNLSFNITEDELKEVFEDALEIRLVSQ-DGKSKGIAYIEFKSEADAEKNLEEKQGAEI 455
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL-KKIFGE-YGTITSAVVM 241
+ + V + + K +R+ K + K L S ++ E + T V
Sbjct: 456 DGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP 515
Query: 242 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG-QFEQ 300
++ GKSK + F+ F + +DA +A+ + N + + R + EL+G +
Sbjct: 516 QNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL-----------ELQGPRGSP 564
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
+ K L++K L + +E LKE F G++ + V +G SKG GFV F+
Sbjct: 565 NARSQPSK----TLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFN 618
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
+ E+A A M I + + A+ K E
Sbjct: 619 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 650
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 224 (83.9 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 59/198 (29%), Positives = 103/198 (52%)
Query: 195 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 254
+ +E + +K K +FV NL S + D+ ++FG+ GT+ + ++R DGK++ F FV
Sbjct: 84 KTEETQNSNLKRK---LFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFV 140
Query: 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQK-KSEREQELKGQFEQAMKETVDKFQGLN 313
+ ++A A++ + + R V A++ K + A +T K
Sbjct: 141 TMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHK----- 195
Query: 314 LYIKNLGDSIDDEKLKELFS--EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 371
LY+ NL L+ELF+ +F +++ V DP G S G GFV+F+T EEA A+ +
Sbjct: 196 LYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITK 255
Query: 372 MNGKMIVSKPLYVAVAQR 389
+NGK I+ +P+ + + R
Sbjct: 256 LNGKEIMGRPITLKFSLR 273
Score = 168 (64.2 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 55/218 (25%), Positives = 104/218 (47%)
Query: 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84
N L L+V +L ++++ + + +LF Q G V +V + R ++ G+ +V A+ +A
Sbjct: 90 NSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEA 148
Query: 85 ARALDVLNFTPLNNKSIRIMYSHR----------D-PSIRKSGTGN-IFIKNLDKSIDHK 132
A+D + ++ + I + ++ R D PS T + +++ NL
Sbjct: 149 QAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARST 208
Query: 133 ALHDTFSSFG-NILSCKIA-TDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFV 190
L + F++ N +S ++ D G+S G+GFV F +E A+NAI KLNG I + + +
Sbjct: 209 HLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITL 268
Query: 191 GHFLRKQERETVAIKTKFNNVFVKN---LDESTTDEDL 225
LR + NN D++T++E++
Sbjct: 269 KFSLRSASESEDGDSVEANNASEDGDTVEDKNTSEENI 306
>RGD|3153 [details] [associations]
symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
"protein C-terminus binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
GermOnline:ENSRNOG00000018273 Uniprot:P13383
Length = 713
Score = 242 (90.2 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 73/265 (27%), Positives = 128/265 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+L +L FN+T+ +L ++F ++ V +D RS G Y+ + + ADA + L+
Sbjct: 398 TLLAKNLSFNITEDELKEVFEDAVEIRLVS--QD---GRSKGIAYIEFKSEADAEKNLEE 452
Query: 91 LNFTPLNNKSIRIMYS----HRDPSIRKSGTGNIFIKNLDKS-IDHKALHDTFSS-FGNI 144
++ +S+ + Y+ R K+ T + K L S + + A +T F
Sbjct: 453 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 512
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
K+ + G+SKG+ F++F + E A+ A++ N M I + + + L+ A
Sbjct: 513 TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNAR 570
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
+FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA
Sbjct: 571 SQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKA 628
Query: 265 AVEALNGKKFDDREWYVGKAQKKSE 289
A EA+ + D + + A+ K E
Sbjct: 629 AKEAMEDGEIDGNKVTLDWAKPKGE 653
Score = 197 (74.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 71/316 (22%), Positives = 148/316 (46%)
Query: 11 QMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
Q P G++ T +L++G+L+ N + ++L S++ + D+ T
Sbjct: 291 QKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV-DVRTGT 349
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI 129
+ +GYV++ + D +AL++ N+ I++ S + + KNL +I
Sbjct: 350 NRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKGRDSKKVRAARTLLAKNLSFNI 408
Query: 130 DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV- 188
L + F + + ++ + G+SKG +++F+++ A+ +++ G I+ + V
Sbjct: 409 TEDELKEVFE---DAVEIRLVSQ-DGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 464
Query: 189 --FVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 244
+ G ++QER + + + + NL S T+E L+++F E T V ++
Sbjct: 465 LYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVF-EKATFIK--VPQNP 521
Query: 245 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV------GKAQKKSEREQEL--KG 296
GKSK + F+ F + +DA +A+ + N + + R + G +S+ + L KG
Sbjct: 522 HGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKG 581
Query: 297 QFEQAMKETV-DKFQG 311
E +ET+ + F+G
Sbjct: 582 LSEDTTEETLKESFEG 597
Score = 170 (64.9 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 60/229 (26%), Positives = 109/229 (47%)
Query: 172 QNAIDKLNGMLINDKQVFVGHF-LRKQE-RETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
++A D + + +VF L K + R++ ++ + KNL + T+++LK++F
Sbjct: 359 ESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAA-RTLLAKNLSFNITEDELKEVF 417
Query: 230 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289
+ + +V +DG +SK ++ F++ DA K +E G + D R + +K +
Sbjct: 418 ED--AVEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQ 473
Query: 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
R QE G K + + L + NL S +E L+E+F + T KV ++P G
Sbjct: 474 R-QERTG------KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHG 523
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 398
SKG F+ F++ E+A AL N I + + + + + AR Q
Sbjct: 524 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQ 572
Score = 163 (62.4 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 57/220 (25%), Positives = 112/220 (50%)
Query: 119 NIFIKNLD--KSI-DHK-ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174
N+FI NL+ KS+ + K A+ + F+ ++ + + T G ++ FG+V FE+ E + A
Sbjct: 312 NLFIGNLNPNKSVAELKVAISELFAK-NDLAAVDVRT---GTNRKFGYVDFESAEDLEKA 367
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
++ L G+ + ++ + + ++ A +T + KNL + T+++LK++F +
Sbjct: 368 LE-LTGLKVFGNEIKLEKPKGRDSKKVRAART----LLAKNLSFNITEDELKEVFED--A 420
Query: 235 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 294
+ +V +DG +SK ++ F++ DA K +E G + D R + +K +R QE
Sbjct: 421 VEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QER 477
Query: 295 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
G K + + L + NL S +E L+E+F +
Sbjct: 478 TG------KNSTWSGESKTLVLSNLSYSATEETLQEVFEK 511
Score = 142 (55.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 63/272 (23%), Positives = 120/272 (44%)
Query: 125 LDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
L K++ D F + + ++ + G+SKG +++F+++ A+ +++ G I
Sbjct: 400 LAKNLSFNITEDELKEVFEDAVEIRLVSQ-DGRSKGIAYIEFKSEADAEKNLEEKQGAEI 458
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL-KKIFGE-YGTITSAVVM 241
+ + V + + K +R+ K + K L S ++ E + T V
Sbjct: 459 DGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP 518
Query: 242 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG-QFEQ 300
++ GKSK + F+ F + +DA +A+ + N + + R + EL+G +
Sbjct: 519 QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL-----------ELQGPRGSP 567
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
+ K L++K L + +E LKE F G++ + V +G SKG GFV F+
Sbjct: 568 NARSQPSK----TLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFN 621
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
+ E+A A M I + + A+ K E
Sbjct: 622 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 653
>UNIPROTKB|Q5U328 [details] [associations]
symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
Genevestigator:Q5U328 Uniprot:Q5U328
Length = 714
Score = 242 (90.2 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 73/265 (27%), Positives = 128/265 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+L +L FN+T+ +L ++F ++ V +D RS G Y+ + + ADA + L+
Sbjct: 399 TLLAKNLSFNITEDELKEVFEDAVEIRLVS--QD---GRSKGIAYIEFKSEADAEKNLEE 453
Query: 91 LNFTPLNNKSIRIMYS----HRDPSIRKSGTGNIFIKNLDKS-IDHKALHDTFSS-FGNI 144
++ +S+ + Y+ R K+ T + K L S + + A +T F
Sbjct: 454 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 513
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
K+ + G+SKG+ F++F + E A+ A++ N M I + + + L+ A
Sbjct: 514 TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNAR 571
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
+FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA
Sbjct: 572 SQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKA 629
Query: 265 AVEALNGKKFDDREWYVGKAQKKSE 289
A EA+ + D + + A+ K E
Sbjct: 630 AKEAMEDGEIDGNKVTLDWAKPKGE 654
Score = 197 (74.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 71/316 (22%), Positives = 148/316 (46%)
Query: 11 QMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
Q P G++ T +L++G+L+ N + ++L S++ + D+ T
Sbjct: 292 QKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAV-DVRTGT 350
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI 129
+ +GYV++ + D +AL++ N+ I++ S + + KNL +I
Sbjct: 351 NRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKGRDSKKVRAARTLLAKNLSFNI 409
Query: 130 DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV- 188
L + F + + ++ + G+SKG +++F+++ A+ +++ G I+ + V
Sbjct: 410 TEDELKEVFE---DAVEIRLVSQ-DGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 465
Query: 189 --FVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG 244
+ G ++QER + + + + NL S T+E L+++F E T V ++
Sbjct: 466 LYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVF-EKATFIK--VPQNP 522
Query: 245 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV------GKAQKKSEREQEL--KG 296
GKSK + F+ F + +DA +A+ + N + + R + G +S+ + L KG
Sbjct: 523 HGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKG 582
Query: 297 QFEQAMKETV-DKFQG 311
E +ET+ + F+G
Sbjct: 583 LSEDTTEETLKESFEG 598
Score = 170 (64.9 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 60/229 (26%), Positives = 109/229 (47%)
Query: 172 QNAIDKLNGMLINDKQVFVGHF-LRKQE-RETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
++A D + + +VF L K + R++ ++ + KNL + T+++LK++F
Sbjct: 360 ESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAA-RTLLAKNLSFNITEDELKEVF 418
Query: 230 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289
+ + +V +DG +SK ++ F++ DA K +E G + D R + +K +
Sbjct: 419 ED--AVEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQ 474
Query: 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
R QE G K + + L + NL S +E L+E+F + T KV ++P G
Sbjct: 475 R-QERTG------KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHG 524
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 398
SKG F+ F++ E+A AL N I + + + + + AR Q
Sbjct: 525 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQ 573
Score = 163 (62.4 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 57/220 (25%), Positives = 112/220 (50%)
Query: 119 NIFIKNLD--KSI-DHK-ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174
N+FI NL+ KS+ + K A+ + F+ ++ + + T G ++ FG+V FE+ E + A
Sbjct: 313 NLFIGNLNPNKSVAELKVAISELFAK-NDLAAVDVRT---GTNRKFGYVDFESAEDLEKA 368
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
++ L G+ + ++ + + ++ A +T + KNL + T+++LK++F +
Sbjct: 369 LE-LTGLKVFGNEIKLEKPKGRDSKKVRAART----LLAKNLSFNITEDELKEVFED--A 421
Query: 235 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 294
+ +V +DG +SK ++ F++ DA K +E G + D R + +K +R QE
Sbjct: 422 VEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QER 478
Query: 295 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
G K + + L + NL S +E L+E+F +
Sbjct: 479 TG------KNSTWSGESKTLVLSNLSYSATEETLQEVFEK 512
Score = 142 (55.0 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 63/272 (23%), Positives = 120/272 (44%)
Query: 125 LDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
L K++ D F + + ++ + G+SKG +++F+++ A+ +++ G I
Sbjct: 401 LAKNLSFNITEDELKEVFEDAVEIRLVSQ-DGRSKGIAYIEFKSEADAEKNLEEKQGAEI 459
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL-KKIFGE-YGTITSAVVM 241
+ + V + + K +R+ K + K L S ++ E + T V
Sbjct: 460 DGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP 519
Query: 242 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG-QFEQ 300
++ GKSK + F+ F + +DA +A+ + N + + R + EL+G +
Sbjct: 520 QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL-----------ELQGPRGSP 568
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
+ K L++K L + +E LKE F G++ + V +G SKG GFV F+
Sbjct: 569 NARSQPSK----TLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFN 622
Query: 361 TPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
+ E+A A M I + + A+ K E
Sbjct: 623 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 654
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 231 (86.4 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 53/185 (28%), Positives = 95/185 (51%)
Query: 5 QVQHQAQMSGPNGVAAGA--SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVC 62
Q + + P+ V A A G + LYVG+LD +T+ L F G + ++++
Sbjct: 48 QAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIM 107
Query: 63 RDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFI 122
D +++ Y +V Y DA AL LN + N ++I ++ + T N+F+
Sbjct: 108 ID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFV 166
Query: 123 KNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGM 181
+L+ ++D + L + F F + LS + D +G S+G+GFV F +++ AQNA+D + G
Sbjct: 167 GDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 226
Query: 182 LINDK 186
+N +
Sbjct: 227 DLNGR 231
Score = 206 (77.6 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 53/182 (29%), Positives = 99/182 (54%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
++V NLD++ T++ LK+ F G I + +M D + K+ + FV + + DA A++ LN
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLN 136
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
GK+ ++ + K + F+ + D F NL++ +L ++DDE L+
Sbjct: 137 GKQIENN---IVK----------INWAFQSQQSSSDDTF---NLFVGDLNVNVDDETLRN 180
Query: 331 LFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389
F +F + S VM D +G S+G GFV+F++ ++A A+ M G+ + +PL + A +
Sbjct: 181 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Query: 390 KE 391
++
Sbjct: 241 RD 242
Score = 196 (74.1 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
Identities = 55/213 (25%), Positives = 101/213 (47%)
Query: 113 RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQ 172
R++ +++ NLDK+I L F G I + KI D + ++ + FV++ A
Sbjct: 70 RETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDAN 129
Query: 173 NAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY 232
A+ LNG I + V + + Q+ + FN +FV +L+ + DE L+ F ++
Sbjct: 130 IALQTLNGKQIENNIVKINWAFQSQQSSS---DDTFN-LFVGDLNVNVDDETLRNAFKDF 185
Query: 233 GTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 291
+ S VM D G S+ +GFV+F + DDA A++++ G+ + R + A K R+
Sbjct: 186 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK---RD 242
Query: 292 QELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324
++Q + G Y N ++++
Sbjct: 243 NNNNNNYQQRRNYGNNNRGGFRQYNSNNNNNMN 275
Score = 134 (52.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
T +L+VGDL+ NV D L + F LS V D+ T S GYG+V++ + DA A+
Sbjct: 161 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 220
Query: 89 DVLNFTPLNNKSIRIMYS-HRD 109
D + LN + +RI ++ RD
Sbjct: 221 DSMQGQDLNGRPLRINWAAKRD 242
Score = 49 (22.3 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEAS 366
YI N+ + L LF FG I K P KG F+ + T E+A+
Sbjct: 344 YIGNIPHFATEADLIPLFQNFGFILDFK--HYPE---KGCCFIKYDTHEQAA 390
>UNIPROTKB|E9PTI5 [details] [associations]
symbol:E9PTI5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 IPI:IPI01007589
Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
Length = 567
Score = 238 (88.8 bits), Expect = 7.8e-17, P = 7.8e-17
Identities = 72/265 (27%), Positives = 128/265 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+L +L FN+T+ +L ++F ++ V +D RS G Y+ + + ADA + L+
Sbjct: 252 TLLAKNLSFNITEDELKEVFEDAVEIRLVS--QD---GRSKGIAYIEFKSEADAEKNLEE 306
Query: 91 LNFTPLNNKSIRIMYS----HRDPSIRKSGTGNIFIKNLDKS-IDHKALHDTFSS-FGNI 144
++ +S+ + Y+ R K+ T + K L S + + A +T F
Sbjct: 307 KQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 366
Query: 145 LSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
K+ + G+SKG+ F++F + E A+ A++ N M I + + + L+ A
Sbjct: 367 TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGPRGSPNAR 424
Query: 205 KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAK 264
+FVK L E TT+E LK+ F G++ + +V G SK FGFV+F + +DA
Sbjct: 425 SQPSKTLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFNSEEDAKT 482
Query: 265 AVEALNGKKFDDREWYVGKAQKKSE 289
A EA+ + D + + A+ K +
Sbjct: 483 AKEAMEDGEIDGNKVTLDWAKPKGK 507
Score = 201 (75.8 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 73/318 (22%), Positives = 152/318 (47%)
Query: 11 QMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQ--LYDLFSQVGQVLSVRVCRDLST 67
Q P G++ T +L++G+L+ +V + + + DLF++ + +V D+ T
Sbjct: 147 QKEAPEAKKQKIEGSEPTTPFNLFIGNLNKSVAELKVAISDLFAK-NDLAAV----DVRT 201
Query: 68 RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDK 127
+ +GYV++ + D +AL++ N+ I++ S + + KNL
Sbjct: 202 GTNRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKGRDSKKVRAARTLLAKNLSF 260
Query: 128 SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ 187
+I L + F + + ++ + G+SKG +++F+++ A+ +++ G I+ +
Sbjct: 261 NITEDELKEVFE---DAVEIRLVSQ-DGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 316
Query: 188 V---FVGHFLRKQER--ETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR 242
V + G ++QER + + + + NL S T+E L+++F E T V +
Sbjct: 317 VSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVF-EKATFIK--VPQ 373
Query: 243 DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV------GKAQKKSEREQEL-- 294
+ GKSK + F+ F + +DA +A+ + N + + R + G +S+ + L
Sbjct: 374 NPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFV 433
Query: 295 KGQFEQAMKETV-DKFQG 311
KG E +ET+ + F+G
Sbjct: 434 KGLSEDTTEETLKESFEG 451
Score = 178 (67.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 58/218 (26%), Positives = 112/218 (51%)
Query: 119 NIFIKNLDKSI-DHK-ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 176
N+FI NL+KS+ + K A+ D F+ ++ + + T G ++ FG+V FE+ E + A++
Sbjct: 168 NLFIGNLNKSVAELKVAISDLFAK-NDLAAVDVRT---GTNRKFGYVDFESAEDLEKALE 223
Query: 177 KLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTIT 236
L G+ + ++ + + ++ A +T + KNL + T+++LK++F + +
Sbjct: 224 -LTGLKVFGNEIKLEKPKGRDSKKVRAART----LLAKNLSFNITEDELKEVFED--AVE 276
Query: 237 SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG 296
+V +DG +SK ++ F++ DA K +E G + D R + +K +R QE G
Sbjct: 277 IRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQR-QERTG 333
Query: 297 QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
K + + L + NL S +E L+E+F +
Sbjct: 334 ------KNSTWSGESKTLVLSNLSYSATEETLQEVFEK 365
Score = 170 (64.9 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 60/229 (26%), Positives = 109/229 (47%)
Query: 172 QNAIDKLNGMLINDKQVFVGHF-LRKQE-RETVAIKTKFNNVFVKNLDESTTDEDLKKIF 229
++A D + + +VF L K + R++ ++ + KNL + T+++LK++F
Sbjct: 213 ESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAA-RTLLAKNLSFNITEDELKEVF 271
Query: 230 GEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289
+ + +V +DG +SK ++ F++ DA K +E G + D R + +K +
Sbjct: 272 ED--AVEIRLVSQDG--RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQ 327
Query: 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSG 349
R QE G K + + L + NL S +E L+E+F + T KV ++P G
Sbjct: 328 R-QERTG------KNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHG 377
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQ 398
SKG F+ F++ E+A AL N I + + + + + AR Q
Sbjct: 378 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQ 426
Score = 141 (54.7 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 59/252 (23%), Positives = 113/252 (44%)
Query: 125 LDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
L K++ D F + + ++ + G+SKG +++F+++ A+ +++ G I
Sbjct: 254 LAKNLSFNITEDELKEVFEDAVEIRLVSQ-DGRSKGIAYIEFKSEADAEKNLEEKQGAEI 312
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL-KKIFGE-YGTITSAVVM 241
+ + V + + K +R+ K + K L S ++ E + T V
Sbjct: 313 DGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP 372
Query: 242 RDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG-QFEQ 300
++ GKSK + F+ F + +DA +A+ + N + + R + EL+G +
Sbjct: 373 QNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRL-----------ELQGPRGSP 421
Query: 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360
+ K L++K L + +E LKE F G++ + V +G SKG GFV F+
Sbjct: 422 NARSQPSK----TLFVKGLSEDTTEETLKESFE--GSVRARIVTDRETGSSKGFGFVDFN 475
Query: 361 TPEEASRALAEM 372
+ E+A A M
Sbjct: 476 SEEDAKTAKEAM 487
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 235 (87.8 bits), Expect = 8.5e-17, P = 8.5e-17
Identities = 78/290 (26%), Positives = 139/290 (47%)
Query: 107 HRDPSIRKSGTGNIFIKNL---DKS--IDHKALHDTFSSFGNILSCKIATDGSG-QSKGF 160
H+ + G+G +K L D +D LH FS + S K+ + QS+G+
Sbjct: 103 HQSQQQPRGGSGGDDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGY 162
Query: 161 GFVQFENKESAQNAIDKLNGMLI-NDKQVFVGHFLRKQERETVAIKTKFN-NVFVKNLDE 218
GFV+F ++ +A+ A+ +G+ + N +Q F ++ E A + + ++FV +L
Sbjct: 163 GFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAP 222
Query: 219 STTDEDLKKIF-GEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDD 276
+D L + F G Y ++ A V+ D + G+SK +GFV F + ++ ++A+ +NG
Sbjct: 223 DVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSS 282
Query: 277 REWYVGKA---------QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEK 327
R+ VG A Q+ + L G + + +++ L + +E
Sbjct: 283 RQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEED 342
Query: 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
L + FS+FG + S K+ P G KG GFV F+ + A A+ +NG +I
Sbjct: 343 LMQPFSDFGEVVSVKI---PVG--KGCGFVQFANRQSAEEAIGNLNGTVI 387
Score = 207 (77.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 60/197 (30%), Positives = 103/197 (52%)
Query: 3 QIQVQHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVC 62
Q Q HQ+Q P G G+ G+ T L+VGDL + ++ L+ FS +V SV+V
Sbjct: 98 QQQQHHQSQQQ-PRG---GSGGDDVKT--LWVGDLLHWMDETYLHTCFSHTNEVSSVKVI 151
Query: 63 RDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN--KSIRIMY-SHRDPSIRKSGTG- 118
R+ T +S GYG+V + + + A AL + + N + R+ + S R S G
Sbjct: 152 RNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGP 211
Query: 119 --NIFIKNLDKSIDHKALHDTFSS-FGNILSCKIATDGS-GQSKGFGFVQFENKESAQNA 174
+IF+ +L + L +TF+ + ++ K+ D + G+SKG+GFV+F ++ A
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 175 IDKLNGMLINDKQVFVG 191
+ ++NG + +Q+ VG
Sbjct: 272 MTEMNGAFCSSRQMRVG 288
Score = 143 (55.4 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 48/174 (27%), Positives = 81/174 (46%)
Query: 222 DED-LKKIFGEYGTITSAVVMRDGDG-KSKCFGFVNFENADDAAKAVEALNGKKFDDREW 279
DE L F ++S V+R+ +S+ +GFV F + A +A+++ +G +
Sbjct: 131 DETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSFSGVTMPN--- 187
Query: 280 YVGKAQKKSEREQELK-GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS-EFGT 337
+E+ L F K + L++++ +L + D L E F+ + +
Sbjct: 188 --------AEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 338 ITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390
+ KV+ D + G SKG GFV F E SRA+ EMNG S+ + V +A K
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
Score = 131 (51.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 30/75 (40%), Positives = 40/75 (53%)
Query: 114 KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQN 173
+S IF+ LD + + L FS FG ++S KI KG GFVQF N++SA+
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV-----GKGCGFVQFANRQSAEE 377
Query: 174 AIDKLNGMLINDKQV 188
AI LNG +I V
Sbjct: 378 AIGNLNGTVIGKNTV 392
Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
Identities = 32/109 (29%), Positives = 58/109 (53%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
++G +G S + ++++VG LD +VT+ L FS G+V+SV++
Sbjct: 309 LAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI------PVGK 362
Query: 72 GYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIR-KSGTGN 119
G G+V +AN A A+ LN T + ++R+ + R P+ + +S +GN
Sbjct: 363 GCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWG-RSPNKQWRSDSGN 410
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 153 (58.9 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 41/152 (26%), Positives = 71/152 (46%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L++G + N+ + L +F Q G++ + V +D T G ++ Y A +A + L
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 92 N---FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ P N+ I++ + D R G +F+ L K + + F FG+I C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSEGR--GDRKLFVGMLGKQLSDADVRKMFEPFGSIEECT 124
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180
+ G SKG FV++++ AQ AI L+G
Sbjct: 125 VLRGPDGASKGCAFVKYQSNAEAQAAISALHG 156
Score = 153 (58.9 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 55/200 (27%), Positives = 92/200 (46%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+F+ + + ++DLK IF ++G I V++D K G K L
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKD-----KYTGM---------HKGCAFLT 54
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVD-KFQG-LNLYIKNLGDSIDDEKL 328
+ RE + KAQ ++ L G + D + +G L++ LG + D +
Sbjct: 55 ---YCARESAL-KAQNALHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADV 110
Query: 329 KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVA 385
+++F FG+I C V+R P G SKG FV + + EA A++ ++G + S L V
Sbjct: 111 RKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLPGASSSLVVK 170
Query: 386 VAQRKEERRAR-LQAQFSQM 404
A ++ER R +Q SQ+
Sbjct: 171 FADTEKERGIRRMQQVASQL 190
Score = 136 (52.9 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
NIFI +L + + F FGN++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 178 LNGMLINDKQVFV 190
+NG I K++ V
Sbjct: 428 MNGFQIGMKRLKV 440
Score = 132 (51.5 bits), Expect = 8.5e-17, Sum P(2) = 8.5e-17
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 368 NIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 427
Query: 269 LNG 271
+NG
Sbjct: 428 MNG 430
Score = 126 (49.4 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 368
+G N++I +L D ++ ++F FG + S KV D + SK GFV+F P A A
Sbjct: 365 EGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 424
Query: 369 LAEMNGKMIVSKPLYVAVAQRKEERR 394
+ MNG I K L V + + K+ R
Sbjct: 425 IQAMNGFQIGMKRLKVQLKRPKDANR 450
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 215 (80.7 bits), Expect = 9.9e-17, P = 9.9e-17
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 13 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLG 72
S N + +SG Q T+LY+ L TD L L G+++S + D +T + G
Sbjct: 44 SSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKG 103
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHK 132
YG+V++ +PA A +A+ L + + + +DP+ N++I NL S+D +
Sbjct: 104 YGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQ 154
Query: 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180
L + FG+++S +I D +G S+G GF + E+ E + I NG
Sbjct: 155 ELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFNG 202
Score = 162 (62.1 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 41/155 (26%), Positives = 75/155 (48%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
N++I+ L + L +G I+S K D + Q KG+GFV F++ +AQ A+
Sbjct: 62 NLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVAS 121
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
L N Q ++QE++ N+++ NL S +++L+ + +G + S
Sbjct: 122 LKA---NGVQA---QMAKQQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVIS 168
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 272
++RD +G S+ GF E+ + ++ NGK
Sbjct: 169 TRILRDANGVSRGVGFARMESTEKCEVVIQHFNGK 203
Score = 141 (54.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 28/88 (31%), Positives = 47/88 (53%)
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 353
LK QA + NLYI NL S+D+++L+ + FG + S +++RD +G+S+G
Sbjct: 122 LKANGVQAQMAKQQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRG 181
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKP 381
GF + E+ + NGK + + P
Sbjct: 182 VGFARMESTEKCEVVIQHFNGKYLKTPP 209
>DICTYBASE|DDB_G0270436 [details] [associations]
symbol:DDB_G0270436 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270436 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_646802.1
ProteinModelPortal:Q55BM9 EnsemblProtists:DDB0191059 GeneID:8617775
KEGG:ddi:DDB_G0270436 InParanoid:Q55BM9 OMA:DICNVFV
ProtClustDB:CLSZ2846937 Uniprot:Q55BM9
Length = 521
Score = 131 (51.2 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+++V L N ++ +LYDLF Q G++++ +V ++ T SLGYG+V + NP +A A+
Sbjct: 22 NVFVKYLPCNFSEKELYDLFEQFGEIVNTKVMVNIKTGNSLGYGFVRFLNPENACEAIKN 81
Query: 91 LNFTPLNNKSI 101
+N + K++
Sbjct: 82 MNRYQVGYKTL 92
Score = 122 (48.0 bits), Expect = 5.3e-12, Sum P(3) = 5.3e-12
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
N+F+K L + K L+D F FG I++ K+ + +G S G+GFV+F N E+A AI
Sbjct: 22 NVFVKYLPCNFSEKELYDLFEQFGEIVNTKVMVNIKTGNSLGYGFVRFLNPENACEAIKN 81
Query: 178 LN 179
+N
Sbjct: 82 MN 83
Score = 114 (45.2 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 27/98 (27%), Positives = 51/98 (52%)
Query: 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFE 166
RDPS ++++ L +I L+ TFS FG ++ ++ D S G+SK G ++F
Sbjct: 139 RDPS------NTLYVRVLSPTITDAILNSTFSQFGEVIEAQVLIDASSGKSKRAGVIKFS 192
Query: 167 NKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAI 204
N + NA+ ++G LI + V + +++++ I
Sbjct: 193 NIHYSTNALQSMSGSLILGETPLVVKYAPNGKKQSIQI 230
Score = 114 (45.2 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 28/86 (32%), Positives = 48/86 (55%)
Query: 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEM 372
LY++ L +I D L FS+FG + +V+ D S G SK +G + FS ++ AL M
Sbjct: 145 LYVRVLSPTITDAILNSTFSQFGEVIEAQVLIDASSGKSKRAGVIKFSNIHYSTNALQSM 204
Query: 373 NGKMIVSK-PLYVAVAQRKEERRARL 397
+G +I+ + PL V A +++ ++
Sbjct: 205 SGSLILGETPLVVKYAPNGKKQSIQI 230
Score = 96 (38.9 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
NVFVK L + ++++L +F ++G I + VM + G S +GFV F N ++A +A++
Sbjct: 22 NVFVKYLPCNFSEKELYDLFEQFGEIVNTKVMVNIKTGNSLGYGFVRFLNPENACEAIKN 81
Query: 269 LN 270
+N
Sbjct: 82 MN 83
Score = 94 (38.1 bits), Expect = 5.3e-13, Sum P(3) = 5.3e-13
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVE 267
N ++V+ L + TD L F ++G + A V+ D GKSK G + F N + A++
Sbjct: 143 NTLYVRVLSPTITDAILNSTFSQFGEVIEAQVLIDASSGKSKRAGVIKFSNIHYSTNALQ 202
Query: 268 ALNG 271
+++G
Sbjct: 203 SMSG 206
Score = 84 (34.6 bits), Expect = 1.1e-16, Sum P(3) = 1.1e-16
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 205 KTKFNN---VFVKNLDESTTDEDLKKIFGEYGTITSAVV-MRDGDGKSKCFGFVNFENAD 260
KT NN + V S +L +IF +YG + S + + K+KCF ++F NA+
Sbjct: 436 KTINNNSVSILVCTFKGSLEYSNLIQIFSKYGDLKSINININPNSNKTKCF--ISFNNAE 493
Query: 261 DAAKAVEALNGKKFDDREW 279
+A A + L+G+K ++
Sbjct: 494 NAILAQQNLDGQKIQGNQF 512
Score = 82 (33.9 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88
+ +LYV L +TD+ L FSQ G+V+ +V D S+ +S G + ++N + AL
Sbjct: 142 SNTLYVRVLSPTITDAILNSTFSQFGEVIEAQVLIDASSGKSKRAGVIKFSNIHYSTNAL 201
Query: 89 DVLN 92
++
Sbjct: 202 QSMS 205
Score = 68 (29.0 bits), Expect = 4.9e-15, Sum P(3) = 4.9e-15
Identities = 16/74 (21%), Positives = 40/74 (54%)
Query: 304 ETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 363
+T++ +++ + S++ L ++FS++G + S + +P+ +K F++F+ E
Sbjct: 436 KTINN-NSVSILVCTFKGSLEYSNLIQIFSKYGDLKSINININPNS-NKTKCFISFNNAE 493
Query: 364 EASRALAEMNGKMI 377
A A ++G+ I
Sbjct: 494 NAILAQQNLDGQKI 507
Score = 67 (28.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 178
+I + S+++ L FS +G++ S I + + +K F+ F N E+A A L
Sbjct: 444 SILVCTFKGSLEYSNLIQIFSKYGDLKSINININPNS-NKTKCFISFNNAENAILAQQNL 502
Query: 179 NGMLINDKQVFVGHFL 194
+G I Q FL
Sbjct: 503 DGQKIQGNQFIRVKFL 518
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 232 (86.7 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 72/289 (24%), Positives = 137/289 (47%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDK 177
+++I +L +D L + F G + K+ + +G S+G+GF++F N +A+ +
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 178 LNGM-LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIF-GEYGTI 235
NG + + +Q F ++ + E + + VFV +L TD L + F Y ++
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSV 200
Query: 236 TSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA-QKKSEREQE 293
A V+ D G+SK +GFV F + + +A+ +NG+ R G A KK Q
Sbjct: 201 KGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 353
Q Q D +++ + S+ ++ LK +F +FG + K+ P+G K
Sbjct: 261 ASYQNTQGNSGESDP-TNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---PAG--KR 314
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARL-QAQF 401
GFV ++ A +AL+ +NG + + + ++ + ++ + QAQ+
Sbjct: 315 CGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQTQPDQAQY 363
Score = 212 (79.7 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 68/303 (22%), Positives = 137/303 (45%)
Query: 7 QHQAQMSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS 66
Q Q Q G G S + SL++GDL + ++ L ++F G+ + +V R+
Sbjct: 59 QPQQQQYGGGGSQNPGSAGEI--RSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQ 116
Query: 67 TRRSLGYGYVNYANPADAARALDVLNFTPL--NNKSIRIMYSHRDPSIRKSGTG---NIF 121
S GYG++ + N A A R L N P+ + ++ R+ ++ R+ G +F
Sbjct: 117 NGYSEGYGFIEFVNHATAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVF 176
Query: 122 IKNLDKSIDHKALHDTFSS-FGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKLN 179
+ +L + L +TF + + ++ K+ D + G+SKG+GFV+F ++ A+ ++N
Sbjct: 177 VGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMN 236
Query: 180 GMLINDKQVFVGHFLRKQE--RETVAIKTKFNNVFVKNLDEST-----TDEDLKK--IFG 230
G + + + G K+ + + + N + +T D+ + + +
Sbjct: 237 GQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKS 296
Query: 231 EYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER 290
+G V ++ GK +C GFV + N A +A+ LNG + + + + S +
Sbjct: 297 VFGQFGELVHVKIPAGK-RC-GFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNK 354
Query: 291 EQE 293
+ +
Sbjct: 355 QTQ 357
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 172 (65.6 bits), Expect = 9.0e-10, P = 9.0e-10
Identities = 58/200 (29%), Positives = 93/200 (46%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
+F+ + + ++DLK IF +YG I V++D G K F+ + + A KA AL
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+ Y G + + + +G+ E D+ L++ LG DE ++
Sbjct: 69 HYSS-----GYSGMNRPIQVKPADSEGRGE-------DR----KLFVGMLGKQQSDEDVR 112
Query: 330 ELFSEFGTITSCKVMRDPSGISK-GSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVA 385
++F FG I C V+R P G SK G FV F + EA A+ ++G + S L V
Sbjct: 113 KIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGASSSLVVK 172
Query: 386 VAQRKEERRAR-LQAQFSQM 404
A ++ER R +Q SQ+
Sbjct: 173 FADTEKERGVRRMQQVTSQL 192
Score = 144 (55.7 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 38/150 (25%), Positives = 68/150 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L++G + N+ + L +F Q G++ + V +D T G ++ Y A +A L
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151
+++ + R + S + +F+ L K + + F FG I C +
Sbjct: 69 HYSSGYSGMNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLR 128
Query: 152 DGSGQSK-GFGFVQFENKESAQNAIDKLNG 180
G SK G FV+F++ AQ+AI+ L+G
Sbjct: 129 GPDGTSKAGCAFVKFQSHSEAQSAINSLHG 158
Score = 143 (55.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 112 IRKSGTG----NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFE 166
+R++ TG N+FI +L + + F FGN++S K+ D + QSK FGFV F+
Sbjct: 347 VREANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFD 406
Query: 167 NKESAQNAIDKLNGMLINDKQVFV 190
N SAQ AI +NG I K++ V
Sbjct: 407 NPASAQTAIQAMNGFQIGMKRLKV 430
Score = 139 (54.0 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 35/105 (33%), Positives = 55/105 (52%)
Query: 291 EQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSG 349
+Q+L+ F Q ++E +G N++I +L D ++ ++F FG + S KV D +
Sbjct: 337 QQQLQS-FSQCVREANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATN 395
Query: 350 ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 396 QSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPKDANR 440
Score = 133 (51.9 bits), Expect = 6.3e-16, Sum P(2) = 6.3e-16
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
NVF+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 358 NVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQA 417
Query: 269 LNG 271
+NG
Sbjct: 418 MNG 420
Score = 51 (23.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
M+ P V S + L+VG L +D + +F G + V R
Sbjct: 77 MNRPIQVKPADSEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKA 136
Query: 72 GYGYVNYANPADAARALDVLN 92
G +V + + ++A A++ L+
Sbjct: 137 GCAFVKFQSHSEAQSAINSLH 157
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 176 (67.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 58/207 (28%), Positives = 95/207 (45%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
+F+ + + ++DLK IF ++G I V++D G K F+ + + A KA AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+ +K + + + + E +G+ D+ L++ LG DE ++
Sbjct: 69 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVR 112
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 386
+F FG I C V+R P G SKG FV F T EA A+ ++G + S L V
Sbjct: 113 RMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKF 172
Query: 387 AQRKEERRAR-LQA---QFSQMRPVAM 409
A ++ER R +Q Q P+A+
Sbjct: 173 ADTEKERGLRRMQQVANQLGMFSPIAL 199
Score = 150 (57.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 42/152 (27%), Positives = 69/152 (45%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L++G + N+ + L +F Q G++ + V +D T G ++ Y A +A L
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 92 N---FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ P N+ I++ + D R +F+ L K + + F FGNI C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRRMFEPFGNIDECT 125
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180
+ G SKG FV+F+ AQ AI+ L+G
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 135 (52.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
NIFI +L + + F FGN++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 178 LNGMLINDKQVFV 190
+NG I K++ V
Sbjct: 438 MNGFQIGMKRLKV 450
Score = 133 (51.9 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQA 437
Query: 269 LNG 271
+NG
Sbjct: 438 MNG 440
Score = 125 (49.1 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 368
+G N++I +L D ++ ++F FG + S KV D + SK GFV+F P A A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 369 LAEMNGKMIVSKPLYVAVAQRKEERR 394
+ MNG I K L V + + K+ R
Sbjct: 435 IQAMNGFQIGMKRLKVQLKRPKDANR 460
Score = 53 (23.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
M+ P V S ++ L+VG L TD + +F G + V R S
Sbjct: 77 MNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRG-PDGTSK 135
Query: 72 GYGYVNYANPADAARALDVLN 92
G +V + +A A++ L+
Sbjct: 136 GCAFVKFQTHTEAQAAINALH 156
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 176 (67.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 58/207 (28%), Positives = 95/207 (45%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEAL 269
+F+ + + ++DLK IF ++G I V++D G K F+ + + A KA AL
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 270 NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLK 329
+ +K + + + + E +G+ D+ L++ LG DE ++
Sbjct: 69 HEQKTLPG---MNRPIQVKPADSESRGE---------DR----KLFVGMLGKQQTDEDVR 112
Query: 330 ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAV 386
+F FG I C V+R P G SKG FV F T EA A+ ++G + S L V
Sbjct: 113 RMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKF 172
Query: 387 AQRKEERRAR-LQA---QFSQMRPVAM 409
A ++ER R +Q Q P+A+
Sbjct: 173 ADTEKERGLRRMQQVANQLGMFSPIAL 199
Score = 152 (58.6 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 42/152 (27%), Positives = 70/152 (46%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L++G + N+ + L +F Q G++ + V +D T G ++ Y A +A L
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 92 N---FTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCK 148
+ P N+ I++ + D R +F+ L K + + F +FGNI C
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSESRGEDR-KLFVGMLGKQQTDEDVRRMFETFGNIDECT 125
Query: 149 IATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180
+ G SKG FV+F+ AQ AI+ L+G
Sbjct: 126 VLRGPDGTSKGCAFVKFQTHTEAQAAINALHG 157
Score = 136 (52.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 31/73 (42%), Positives = 42/73 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
NIFI +L + + F FGN++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 178 LNGMLINDKQVFV 190
+NG I K++ V
Sbjct: 438 MNGFQIGMKRLKV 450
Score = 130 (50.8 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A+++
Sbjct: 378 NIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQS 437
Query: 269 LNG 271
+NG
Sbjct: 438 MNG 440
Score = 126 (49.4 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRA 368
+G N++I +L D ++ ++F FG + S KV D + SK GFV+F P A A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 369 LAEMNGKMIVSKPLYVAVAQRKEERR 394
+ MNG I K L V + + K+ R
Sbjct: 435 IQSMNGFQIGMKRLKVQLKRPKDANR 460
Score = 53 (23.7 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 12 MSGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSL 71
M+ P V S ++ L+VG L TD + +F G + V R S
Sbjct: 77 MNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRG-PDGTSK 135
Query: 72 GYGYVNYANPADAARALDVLN 92
G +V + +A A++ L+
Sbjct: 136 GCAFVKFQTHTEAQAAINALH 156
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 212 (79.7 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 49/139 (35%), Positives = 77/139 (55%)
Query: 63 RDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFI 122
+D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-NIFI 61
Query: 123 KNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F + +++ AI+ +NG
Sbjct: 62 GNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 121
Query: 181 MLINDKQVFVGHFLRKQER 199
+ ++ + V + +K +
Sbjct: 122 QYLCNRPITVSYAFKKDSK 140
Score = 168 (64.2 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 48/153 (31%), Positives = 81/153 (52%)
Query: 246 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKET 305
G+ + +GFV F + +DA A++ +N K + V KA A +
Sbjct: 8 GQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKAS---------------AHNKN 52
Query: 306 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDP-SGISKGSGFVAFSTPE 363
+D G N++I NL ID++ L + FS FG I K+MRDP +G SKG F+ F++ +
Sbjct: 53 LDV--GANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFD 110
Query: 364 EASRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396
+ A+ MNG+ + ++P+ V+ A +K+ + R
Sbjct: 111 ASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 143
Score = 167 (63.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 45/139 (32%), Positives = 71/139 (51%)
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFV 213
+GQ +G+GFV+F ++E A AI +N + + K + V + V N+F+
Sbjct: 7 TGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGA-----NIFI 61
Query: 214 KNLDESTTDEDLKKIFGEYGTITSAV-VMRDGD-GKSKCFGFVNFENADDAAKAVEALNG 271
NLD ++ L F +G I +MRD D G SK + F+NF + D + A+EA+NG
Sbjct: 62 GNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 121
Query: 272 KKFDDREWYVGKAQKKSER 290
+ +R V A KK +
Sbjct: 122 QYLCNRPITVSYAFKKDSK 140
Score = 128 (50.1 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 31/112 (27%), Positives = 61/112 (54%)
Query: 4 IQVQHQAQMSG-PNGVAAGASGNQFLTT--SLYVGDLDFNVTDSQLYDLFSQVGQVLSV- 59
I++ + ++ G P V ++ N+ L ++++G+LD + + LYD FS G +L
Sbjct: 28 IKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTP 87
Query: 60 RVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS 111
++ RD T S GY ++N+A+ + A++ +N L N+ I + Y+ + S
Sbjct: 88 KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 139
>UNIPROTKB|F1SLB3 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CU633731
EMBL:CU655980 Ensembl:ENSSSCT00000000434 OMA:GHQMAPP
ArrayExpress:F1SLB3 Uniprot:F1SLB3
Length = 281
Score = 211 (79.3 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 50/171 (29%), Positives = 83/171 (48%)
Query: 13 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLG 72
S PN +Q T+LY+ L TD L L G+++S + D +T + G
Sbjct: 9 STPNSSNGSNVNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKG 68
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHK 132
YG+V++ +P+ A +A+ L + + + + +DP+ N++I NL S+D +
Sbjct: 69 YGFVDFDSPSAAQKAVTALKASGVQAQMAK--QQEQDPT-------NLYISNLPLSMDEQ 119
Query: 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
L FG ++S +I D SG S+G GF + E+ E + I NG I
Sbjct: 120 ELEGMLKPFGQVISTRILRDTSGTSRGVGFARMESTEKCEAIITHFNGKYI 170
Score = 154 (59.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 39/155 (25%), Positives = 74/155 (47%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDK 177
N++I+ L + L S+G I+S K D + + KG+GFV F++ +AQ A+
Sbjct: 27 NLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTA 86
Query: 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS 237
L + + ++QE++ N+++ NL S +++L+ + +G + S
Sbjct: 87 LKASGVQAQMA------KQQEQDPT-------NLYISNLPLSMDEQELEGMLKPFGQVIS 133
Query: 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGK 272
++RD G S+ GF E+ + + NGK
Sbjct: 134 TRILRDTSGTSRGVGFARMESTEKCEAIITHFNGK 168
Score = 142 (55.0 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 30/88 (34%), Positives = 46/88 (52%)
Query: 294 LKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKG 353
LK QA + NLYI NL S+D+++L+ + FG + S +++RD SG S+G
Sbjct: 87 LKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELEGMLKPFGQVISTRILRDTSGTSRG 146
Query: 354 SGFVAFSTPEEASRALAEMNGKMIVSKP 381
GF + E+ + NGK I + P
Sbjct: 147 VGFARMESTEKCEAIITHFNGKYIKTPP 174
>UNIPROTKB|F1SMV6 [details] [associations]
symbol:LOC100737174 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:CU856676
Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
Length = 365
Score = 227 (85.0 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 73/266 (27%), Positives = 128/266 (48%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+L +L + VT +L ++F ++ V +D +S G Y+ + ADA + L+
Sbjct: 48 TLLAKNLPYKVTQDELKEVFEDAVEIRLVS--KD---GKSKGIAYIEFKTEADAEKTLEE 102
Query: 91 LNFTPLNNKSIRIMYSH---RDPSIR--KSGTGNIFIKNLDKS-IDHKALHDTFSS-FGN 143
T ++ +SI + Y+ ++ R K+ T + K L S + + A +T F
Sbjct: 103 KQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK 162
Query: 144 ILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 203
K+ + +G+SKG+ F++F + E A+ A++ N I + + + L+ A
Sbjct: 163 ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE--LQGPRGSPNA 220
Query: 204 IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAA 263
+FVK L E TT+E LK+ F G+I + +V G SK FGFV+F + +DA
Sbjct: 221 RSQPSKTLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEEDAK 278
Query: 264 KAVEALNGKKFDDREWYVGKAQKKSE 289
A EA+ + D + + A+ K E
Sbjct: 279 AAKEAMEDGEIDGNKVTLDWAKPKGE 304
Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 58/254 (22%), Positives = 118/254 (46%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHK 132
+GYV++ + D +AL++ N+ I++ S + + KNL +
Sbjct: 3 FGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 61
Query: 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV---F 189
L + F I ++ DG +SKG +++F+ + A+ +++ G I+ + + +
Sbjct: 62 ELKEVFEDAVEIRL--VSKDG--KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYY 117
Query: 190 VGHFLRKQERETVAIKT---KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG 246
G + Q+ T + + + NL S T+E L+++F E T V ++ +G
Sbjct: 118 TGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVF-EKATFIK--VPQNQNG 174
Query: 247 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV------GKAQKKSEREQEL--KGQF 298
KSK + F+ F + +DA +A+ + N ++ + R + G +S+ + L KG
Sbjct: 175 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLS 234
Query: 299 EQAMKETV-DKFQG 311
E+ +ET+ + F G
Sbjct: 235 EETTEETLKESFDG 248
Score = 165 (63.1 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+ KNL T ++LK++F + + +V +DG KSK ++ F+ DA K +E
Sbjct: 49 LLAKNLPYKVTQDELKEVFED--AVEIRLVSKDG--KSKGIAYIEFKTEADAEKTLEEKQ 104
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G + D R + +K + Q+ +G K + + L + NL S +E L+E
Sbjct: 105 GTEIDGRSISLYYTGEKGQN-QDFRGG-----KNSTWSGESKTLVLSNLAYSATEETLQE 158
Query: 331 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390
+F + T KV ++ +G SKG F+ F++ E+A AL N + I + + + + +
Sbjct: 159 VFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 215
Query: 391 EERRARLQ 398
AR Q
Sbjct: 216 GSPNARSQ 223
Score = 147 (56.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 65/273 (23%), Positives = 125/273 (45%)
Query: 125 LDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
L K++ +K D F + + ++ + G+SKG +++F+ + A+ +++ G I
Sbjct: 50 LAKNLPYKVTQDELKEVFEDAVEIRLVSK-DGKSKGIAYIEFKTEADAEKTLEEKQGTEI 108
Query: 184 NDKQVFVGHFLRK-QERETVAIKTKFNNVFVKNLDESTTDEDL-KKIFGE-YGTITSAVV 240
+ + + + + K Q ++ K + K L S ++ E + T V
Sbjct: 109 DGRSISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEKATFIKV 168
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG-QFE 299
++ +GKSK + F+ F + +DA +A+ + N ++ + G+A + EL+G +
Sbjct: 169 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE------GRAIRL-----ELQGPRGS 217
Query: 300 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 359
+ K L++K L + +E LKE F G+I + V +G SKG GFV F
Sbjct: 218 PNARSQPSK----TLFVKGLSEETTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDF 271
Query: 360 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
++ E+A A M I + + A+ K E
Sbjct: 272 NSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 304
Score = 140 (54.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 44/175 (25%), Positives = 83/175 (47%)
Query: 160 FGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES 219
FG+V FE+ E + A++ L G+ + ++ + K ++ +T + KNL
Sbjct: 3 FGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGKDSKKDRDART----LLAKNLPYK 57
Query: 220 TTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREW 279
T ++LK++F + + +V +DG KSK ++ F+ DA K +E G + D R
Sbjct: 58 VTQDELKEVFED--AVEIRLVSKDG--KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSI 113
Query: 280 YVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
+ +K + Q+ +G K + + L + NL S +E L+E+F +
Sbjct: 114 SLYYTGEKGQN-QDFRGG-----KNSTWSGESKTLVLSNLAYSATEETLQEVFEK 162
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 228 (85.3 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 77/285 (27%), Positives = 131/285 (45%)
Query: 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSK-------GFG----------- 161
+++ NL + + + F+ G SCK+ T+ S S+ GF
Sbjct: 10 LYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTSNDPYC 69
Query: 162 FVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR--KQERETVAIKTKFNNVFVKNLDES 219
FV+F A A+ +NG I K+V V Q+++T F+ VFV +L
Sbjct: 70 FVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT---SNHFH-VFVGDLSPE 125
Query: 220 TTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 278
T +D++ F +G I+ A V++D GKSK +GFV+F N DA A+ + G+ R+
Sbjct: 126 ITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 185
Query: 279 ----WYVGKAQK-KSEREQELKG-QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELF 332
W K KS ++ K +F++ + ++ Q +Y + + + +++ F
Sbjct: 186 IRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSP--QNCTVYCGGIQSGLTEHLMRQTF 243
Query: 333 SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377
S FG I +V + KG F+ FS+ E A+ A+ +NG I
Sbjct: 244 SPFGQIMEIRVFPE-----KGYSFIRFSSHESAAHAIVSVNGTTI 283
Score = 190 (71.9 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 63/252 (25%), Positives = 116/252 (46%)
Query: 73 YGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSI 129
Y +V + DAA AL +N + K +++ ++ PS +K T N +F+ +L I
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEI 126
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188
+ F+ FG I ++ D +G+SKG+GFV F NK A+NAI + G + +Q+
Sbjct: 127 TTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 186
Query: 189 FVGHFLRKQE-----RETVAIKTKFNNV-----------FVKNLDESTTDEDLKKIFGEY 232
RK ++ A + +F+ V + + T+ +++ F +
Sbjct: 187 RTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEHLMRQTFSPF 246
Query: 233 GTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR--EWYVGK-AQKKSE 289
G I V + K + F+ F + + AA A+ ++NG + + Y GK + ++
Sbjct: 247 GQIMEIRVFPE-----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMAK 301
Query: 290 REQELK-GQFEQ 300
Q ++ GQ+ Q
Sbjct: 302 NVQPMEYGQWGQ 313
Score = 149 (57.5 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 48/168 (28%), Positives = 79/168 (47%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
++VGDL +T + F+ G++ RV +D++T +S GYG+V++ N DA A+ +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 92 NFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL--DKSIDHKALHDTFSSFGNILS--- 146
L + IR ++ R P KS N K L D+ ++ + + G I S
Sbjct: 177 GGQWLGGRQIRTNWATRKPPAPKSVQDNS-AKQLRFDEVVNQSSPQNCTVYCGGIQSGLT 235
Query: 147 ---CKIATDGSGQ--------SKGFGFVQFENKESAQNAIDKLNGMLI 183
+ GQ KG+ F++F + ESA +AI +NG I
Sbjct: 236 EHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGTTI 283
Score = 137 (53.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 41/139 (29%), Positives = 70/139 (50%)
Query: 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGL 312
FV F DAA A+ A+NG+K +E V A S ++ K+T + F
Sbjct: 70 FVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----------KDTSNHF--- 115
Query: 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAE 371
++++ +L I + ++ F+ FG I+ +V++D +G SKG GFV+F +A A+
Sbjct: 116 HVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVH 175
Query: 372 MNGKMIVSKPLYVAVAQRK 390
M G+ + + + A RK
Sbjct: 176 MGGQWLGGRQIRTNWATRK 194
Score = 66 (28.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS-TRRSLGYGYVNYA 79
+LYVG+L +VT++ + LF+Q+G S ++ + S + R + + ++
Sbjct: 9 TLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFS 58
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 150 (57.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 42/136 (30%), Positives = 63/136 (46%)
Query: 283 KAQKKSEREQELKGQFEQAMKETVD-KFQG-LNLYIKNLGDSIDDEKLKELFSEFGTITS 340
KAQ ++ L G + D + +G L++ LG DE ++++F FGTI
Sbjct: 65 KAQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDE 124
Query: 341 CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SKPLYVAVAQRKEERRAR- 396
C V+R P G SKG FV F T EA A+ ++ + S L V A ++ER R
Sbjct: 125 CTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRR 184
Query: 397 ---LQAQFSQMRPVAM 409
+ Q P+A+
Sbjct: 185 MQQVATQLGMFSPIAL 200
Score = 145 (56.1 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 41/150 (27%), Positives = 69/150 (46%)
Query: 125 LDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
+ + ++ K L F FG I + D +G KG F+ + ++SA A L+
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALH---- 71
Query: 184 NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 243
+++ G Q + + +FV L + TDED++K+F +GTI V+R
Sbjct: 72 -EQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG 130
Query: 244 GDGKSKCFGFVNFENADDAAKAVEALNGKK 273
DG SK FV F+ +A A+ L+ +
Sbjct: 131 PDGTSKGCAFVKFQTHAEAQAAINTLHSSR 160
Score = 135 (52.6 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 289 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-P 347
+++Q+ + Q +Q +E D G N++I +L D ++ ++F FG + S KV D
Sbjct: 361 QQQQQQQQQQQQQQREGPD---GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 417
Query: 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394
+ SK GFV+F P A A+ MNG I K L V + + K+ R
Sbjct: 418 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 464
Score = 131 (51.2 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 25/63 (39%), Positives = 41/63 (65%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEA 268
N+F+ +L + TD ++ ++F +G + SA V D +SKCFGFV+F+N A A++A
Sbjct: 382 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 441
Query: 269 LNG 271
+NG
Sbjct: 442 MNG 444
Score = 131 (51.2 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177
NIFI +L + + F FG+++S K+ D + QSK FGFV F+N SAQ AI
Sbjct: 382 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQA 441
Query: 178 LNGMLINDKQVFV 190
+NG I K++ V
Sbjct: 442 MNGFQIGMKRLKV 454
Score = 124 (48.7 bits), Expect = 6.6e-14, Sum P(2) = 6.6e-14
Identities = 38/143 (26%), Positives = 63/143 (44%)
Query: 40 NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN---FTPL 96
++ + L +F Q G++ + V +D T G ++ Y A +A L+ P
Sbjct: 19 HLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKTLPG 78
Query: 97 NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ 156
N+ I++ + D R G +F+ L K + + F FG I C + G
Sbjct: 79 MNRPIQVKPA--DSESR--GDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGT 134
Query: 157 SKGFGFVQFENKESAQNAIDKLN 179
SKG FV+F+ AQ AI+ L+
Sbjct: 135 SKGCAFVKFQTHAEAQAAINTLH 157
Score = 55 (24.4 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91
L+VG L TD + +F G + V R S G +V + A+A A++ L
Sbjct: 98 LFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRG-PDGTSKGCAFVKFQTHAEAQAAINTL 156
Query: 92 N 92
+
Sbjct: 157 H 157
Score = 42 (19.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1 MAQIQVQHQAQMSGPNGVAA 20
MA +Q+QH A ++ NG+ A
Sbjct: 233 MAAVQMQHMAAINA-NGLIA 251
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 197 (74.4 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 45/138 (32%), Positives = 74/138 (53%)
Query: 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFV 213
+ S G+GFV+F K+ A AI++LNG ++ K + V + + T A N+++
Sbjct: 148 NNSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHA------NLYI 201
Query: 214 KNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEALNGK 272
L+ T+ +LK++FG +G + ++ D D G S+C GFV+F +A KAV ++NG
Sbjct: 202 NRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGA 261
Query: 273 K--FDDREWYVGKAQKKS 288
F YV A + S
Sbjct: 262 NIPFQSTPIYVKFANQLS 279
Score = 183 (69.5 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 61/198 (30%), Positives = 92/198 (46%)
Query: 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVM----RDGDGKSKCFGFVNFENADDAAKA 265
N+ V N+ +S +LK +F ++G I S ++ +DG+G S +N N++ +
Sbjct: 83 NLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNSNIN--INSNNSNGSNSN 140
Query: 266 VEALNGKKFDDREWYVGKAQKKSERE---QELKGQFEQAMKET-VDKFQG-------LNL 314
N + K KK E ++L G FE K V Q NL
Sbjct: 141 NNNNNSNNNSSLGYGFVKFSKKDEAAMAIEQLNG-FEVDSKPLKVSYAQASSSQSTHANL 199
Query: 315 YIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN 373
YI L + + LKE+F FG + K++ DP +G S+ GFV FS EA +A++ MN
Sbjct: 200 YINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMN 259
Query: 374 GKMIV--SKPLYVAVAQR 389
G I S P+YV A +
Sbjct: 260 GANIPFQSTPIYVKFANQ 277
Score = 182 (69.1 bits), Expect = 2.0e-14, Sum P(3) = 2.0e-14
Identities = 37/112 (33%), Positives = 65/112 (58%)
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI 129
SLGYG+V ++ +AA A++ LN +++K +++ Y+ S +S N++I L+ +
Sbjct: 151 SLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSS--QSTHANLYINRLEPHV 208
Query: 130 DHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNG 180
+ L + F SFG+++ KI TD +G S+ GFV F + A A+ +NG
Sbjct: 209 TNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNG 260
Score = 108 (43.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 31/126 (24%), Positives = 66/126 (52%)
Query: 20 AGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYA 79
A AS +Q +LY+ L+ +VT++ L ++F G V+ ++ D T S G+V+++
Sbjct: 187 AQASSSQSTHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFS 246
Query: 80 NPADAARALDVLNFT--PLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDT 137
+A +A+ +N P + I + ++++ S +G N I N + + ++ +++
Sbjct: 247 QRREALKAVSSMNGANIPFQSTPIYVKFANQ-LSGNNNGNNNNNIINSNSNNNNN--NNS 303
Query: 138 FSSFGN 143
S+F N
Sbjct: 304 NSNFNN 309
Score = 72 (30.4 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373
++I NL ++ID+ L +LF+ FG I+ +++ + G + + + A+ +N
Sbjct: 454 IHISNLPNNIDETFLYKLFA-FGAISGVQLLNN------GQAIITYLDYQTVQNAINTLN 506
Query: 374 GKMIVSKPLYV 384
GK+I + L V
Sbjct: 507 GKIISGRSLKV 517
Score = 49 (22.3 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVN 77
T+L V ++ ++ ++L LF + G++ S C+ + R+ G G N
Sbjct: 82 TNLIVNNIPKSMDSNELKSLFDKFGEIES---CKIVFNRKKDGNGNSN 126
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 233 (87.1 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 74/269 (27%), Positives = 128/269 (47%)
Query: 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90
+L +L + VT +L ++F ++ V +D +S G Y+ + ADA + L+
Sbjct: 404 TLLAKNLPYKVTQDELKEVFEDAVEIRLVS--KD---GKSKGIAYIEFKTEADAEKTLEE 458
Query: 91 LNFTPLNNKSIRIMYS--------HRD-PSIRKSGTGN-IFIKNLDKSIDHKALHDTFSS 140
T ++ +SI + Y+ HR + SG + + NL S + L + F
Sbjct: 459 KQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK 518
Query: 141 FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERE 200
+I K+ + +G+SKG+ F++F + E A+ A++ N I + + + L+
Sbjct: 519 ATHI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE--LQGPRGS 573
Query: 201 TVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENAD 260
A +FVK L E TT+E LK+ F G+I + +V G SK FGFV+F + +
Sbjct: 574 PNARSQPSKTLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDFNSEE 631
Query: 261 DAAKAVEALNGKKFDDREWYVGKAQKKSE 289
DA A EA+ + D + + A+ K E
Sbjct: 632 DAKAAKEAMEDGEIDGNKVTLDWAKPKGE 660
Score = 196 (74.1 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 72/317 (22%), Positives = 144/317 (45%)
Query: 11 QMSGPNGVAAGASGNQFLTT-SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR 69
Q + P G + T+ +L+VG+L+FN + +L S + + V D+
Sbjct: 297 QKAAPEAKKQKVEGTEPTTSFNLFVGNLNFNKSAPELKTGISDLFAKNDLAVV-DVRIGV 355
Query: 70 SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSI 129
S +GYV++ + D +AL++ N+ I++ S + + KNL +
Sbjct: 356 SRKFGYVDFESAEDLEKALELTGLKVFGNE-IKLEKPKGKDSKKDRDARTLLAKNLPYKV 414
Query: 130 DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV- 188
L + F I ++ DG +SKG +++F+ + A+ +++ G I+ + +
Sbjct: 415 TQDELKEVFEDAVEIRL--VSKDG--KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSIS 470
Query: 189 --FVGHFLRKQERETVAIKT---KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD 243
+ G + Q+ T + + + NL S T+E L+++F + T V ++
Sbjct: 471 LYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATHIKVPQN 527
Query: 244 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV------GKAQKKSEREQEL--K 295
+GKSK + F+ F + +DA +A+ + N ++ + R + G +S+ + L K
Sbjct: 528 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVK 587
Query: 296 GQFEQAMKETV-DKFQG 311
G E +ET+ + F G
Sbjct: 588 GLSEDTTEETLKESFDG 604
Score = 163 (62.4 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 50/188 (26%), Positives = 88/188 (46%)
Query: 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270
+ KNL T ++LK++F + + +V +DG KSK ++ F+ DA K +E
Sbjct: 405 LLAKNLPYKVTQDELKEVFED--AVEIRLVSKDG--KSKGIAYIEFKTEADAEKTLEEKQ 460
Query: 271 GKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330
G + D R + +K + + G K + + L + NL S +E L+E
Sbjct: 461 GTEIDGRSISLYYTGEKGQSQDHRGG------KNSTWSGESKTLVLSNLSYSATEETLQE 514
Query: 331 LFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390
+F + T KV ++ +G SKG F+ F++ E+A AL N + I + + + + +
Sbjct: 515 VFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 571
Query: 391 EERRARLQ 398
AR Q
Sbjct: 572 GSPNARSQ 579
Score = 151 (58.2 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 62/273 (22%), Positives = 121/273 (44%)
Query: 125 LDKSIDHKALHDTFSS-FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183
L K++ +K D F + + ++ + G+SKG +++F+ + A+ +++ G I
Sbjct: 406 LAKNLPYKVTQDELKEVFEDAVEIRLVSK-DGKSKGIAYIEFKTEADAEKTLEEKQGTEI 464
Query: 184 NDKQV---FVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240
+ + + + G + Q+ T L + + + + T V
Sbjct: 465 DGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATHIKV 524
Query: 241 MRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG-QFE 299
++ +GKSK + F+ F + +DA +A+ + N ++ + G+A + EL+G +
Sbjct: 525 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE------GRAIRL-----ELQGPRGS 573
Query: 300 QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAF 359
+ K L++K L + +E LKE F G+I + V +G SKG GFV F
Sbjct: 574 PNARSQPSK----TLFVKGLSEDTTEETLKESFD--GSIRARIVTDRETGSSKGFGFVDF 627
Query: 360 STPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392
++ E+A A M I + + A+ K E
Sbjct: 628 NSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 660
Score = 149 (57.5 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 55/220 (25%), Positives = 101/220 (45%)
Query: 119 NIFIKNLD--KSIDH--KALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174
N+F+ NL+ KS + D F+ N L+ + G S+ FG+V FE+ E + A
Sbjct: 318 NLFVGNLNFNKSAPELKTGISDLFAK--NDLA--VVDVRIGVSRKFGYVDFESAEDLEKA 373
Query: 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT 234
++ L G+ + ++ + K ++ +T + KNL T ++LK++F +
Sbjct: 374 LE-LTGLKVFGNEIKLEKPKGKDSKKDRDART----LLAKNLPYKVTQDELKEVFED--A 426
Query: 235 ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL 294
+ +V +DG KSK ++ F+ DA K +E G + D R + +K + +
Sbjct: 427 VEIRLVSKDG--KSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHR 484
Query: 295 KGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSE 334
G K + + L + NL S +E L+E+F +
Sbjct: 485 GG------KNSTWSGESKTLVLSNLSYSATEETLQEVFEK 518
WARNING: HSPs involving 1328 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 593 563 0.0010 119 3 11 22 0.42 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1578
No. of states in DFA: 604 (64 KB)
Total size of DFA: 261 KB (2139 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.77u 0.09s 52.86t Elapsed: 00:00:03
Total cpu time: 52.89u 0.09s 52.98t Elapsed: 00:00:03
Start: Fri May 10 08:02:18 2013 End: Fri May 10 08:02:21 2013
WARNINGS ISSUED: 2