Query 007673
Match_columns 593
No_of_seqs 414 out of 3177
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 13:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 1.4E-93 3E-98 785.5 57.1 531 30-568 1-562 (562)
2 KOG0123 Polyadenylate-binding 100.0 1.4E-59 3E-64 476.8 30.9 359 30-403 2-362 (369)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.6E-48 3.4E-53 417.7 35.7 348 28-389 1-479 (481)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.9E-44 2.1E-48 369.3 30.4 341 28-392 2-351 (352)
5 TIGR01628 PABP-1234 polyadenyl 100.0 4.7E-41 1E-45 369.4 37.1 258 119-393 2-264 (562)
6 KOG0117 Heterogeneous nuclear 100.0 2.2E-39 4.8E-44 316.0 34.0 284 76-396 39-337 (506)
7 KOG0145 RNA-binding protein EL 100.0 2.5E-40 5.5E-45 300.5 24.5 329 9-390 20-358 (360)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.4E-39 3.1E-44 344.7 26.9 301 23-340 52-370 (578)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 8.2E-38 1.8E-42 331.3 29.4 281 80-392 18-309 (578)
10 KOG0117 Heterogeneous nuclear 100.0 7.6E-38 1.6E-42 305.3 24.5 255 21-291 75-335 (506)
11 KOG0127 Nucleolar protein fibr 100.0 1.9E-36 4.2E-41 301.6 27.1 343 30-372 6-516 (678)
12 TIGR01645 half-pint poly-U bin 100.0 2E-35 4.3E-40 313.3 29.2 168 28-195 106-283 (612)
13 KOG0144 RNA-binding protein CU 100.0 2.5E-36 5.4E-41 293.2 20.2 363 27-390 32-504 (510)
14 TIGR01622 SF-CC1 splicing fact 100.0 5.1E-35 1.1E-39 314.4 31.2 341 26-392 86-450 (457)
15 KOG0148 Apoptosis-promoting RN 100.0 1.2E-35 2.7E-40 272.2 18.9 234 116-391 5-239 (321)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.4E-35 1.6E-39 312.2 25.8 262 117-390 2-351 (481)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.6E-33 7.8E-38 304.3 28.4 255 25-286 171-501 (509)
18 KOG0148 Apoptosis-promoting RN 100.0 7.3E-34 1.6E-38 260.5 18.0 220 26-285 3-236 (321)
19 KOG0127 Nucleolar protein fibr 100.0 1.1E-32 2.3E-37 274.9 22.2 276 118-393 6-381 (678)
20 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.1E-32 1.3E-36 294.7 24.6 269 116-390 174-502 (509)
21 KOG0123 Polyadenylate-binding 100.0 8.6E-32 1.9E-36 273.7 23.8 346 119-569 3-348 (369)
22 KOG0110 RNA-binding protein (R 100.0 6.3E-31 1.4E-35 271.2 17.2 328 28-392 226-695 (725)
23 TIGR01659 sex-lethal sex-letha 100.0 5.3E-30 1.2E-34 259.5 21.8 170 25-196 103-275 (346)
24 TIGR01659 sex-lethal sex-letha 100.0 9.4E-29 2E-33 250.4 22.2 168 206-391 105-276 (346)
25 KOG0144 RNA-binding protein CU 100.0 7.1E-28 1.5E-32 234.5 13.4 172 208-396 34-212 (510)
26 TIGR01645 half-pint poly-U bin 99.9 9.2E-26 2E-30 239.8 27.2 177 207-390 106-284 (612)
27 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 6E-26 1.3E-30 235.9 21.6 171 28-198 88-351 (352)
28 KOG4212 RNA-binding protein hn 99.9 2.6E-25 5.6E-30 216.5 21.0 237 25-274 40-281 (608)
29 KOG0131 Splicing factor 3b, su 99.9 7.8E-26 1.7E-30 196.4 11.9 173 25-198 5-179 (203)
30 smart00517 PolyA C-terminal do 99.9 1.1E-26 2.3E-31 169.1 5.5 64 507-570 1-64 (64)
31 KOG0147 Transcriptional coacti 99.9 1.3E-25 2.8E-30 226.3 13.6 327 26-389 176-527 (549)
32 KOG0124 Polypyrimidine tract-b 99.9 1.3E-24 2.9E-29 206.9 19.6 272 117-388 113-533 (544)
33 KOG0124 Polypyrimidine tract-b 99.9 5.7E-25 1.2E-29 209.5 16.1 166 29-194 113-288 (544)
34 KOG1190 Polypyrimidine tract-b 99.9 2.3E-24 5.1E-29 208.6 19.7 348 26-389 25-490 (492)
35 KOG0110 RNA-binding protein (R 99.9 1E-24 2.3E-29 225.5 17.8 258 26-289 382-695 (725)
36 TIGR01622 SF-CC1 splicing fact 99.9 9.2E-24 2E-28 227.1 19.4 177 207-390 88-266 (457)
37 KOG0145 RNA-binding protein EL 99.9 4.6E-24 1E-28 194.7 13.5 168 206-391 39-210 (360)
38 PF00658 PABP: Poly-adenylate 99.9 1.3E-24 2.8E-29 165.0 4.8 71 497-567 2-72 (72)
39 KOG0146 RNA-binding protein ET 99.9 7.5E-23 1.6E-27 187.5 11.4 187 207-393 18-368 (371)
40 KOG0131 Splicing factor 3b, su 99.9 8.2E-23 1.8E-27 177.7 9.6 168 207-391 8-178 (203)
41 KOG4211 Splicing factor hnRNP- 99.9 5E-21 1.1E-25 190.8 22.2 335 28-370 9-490 (510)
42 KOG0109 RNA-binding protein LA 99.9 9.3E-22 2E-26 182.9 10.2 147 210-390 4-150 (346)
43 KOG0109 RNA-binding protein LA 99.8 4.4E-21 9.6E-26 178.4 10.6 150 30-198 3-152 (346)
44 KOG1456 Heterogeneous nuclear 99.8 3.6E-18 7.9E-23 163.9 26.7 344 21-380 23-475 (494)
45 KOG4212 RNA-binding protein hn 99.8 1.2E-19 2.5E-24 177.3 14.0 248 117-388 44-292 (608)
46 KOG4211 Splicing factor hnRNP- 99.8 7E-17 1.5E-21 161.4 21.0 263 117-385 10-353 (510)
47 KOG4205 RNA-binding protein mu 99.8 2.7E-18 5.9E-23 168.6 10.5 170 28-199 5-179 (311)
48 KOG0105 Alternative splicing f 99.7 4E-17 8.7E-22 142.2 13.9 148 27-183 4-175 (241)
49 KOG0146 RNA-binding protein ET 99.7 1.8E-17 3.9E-22 152.4 11.8 168 28-196 18-365 (371)
50 KOG0147 Transcriptional coacti 99.7 7.8E-18 1.7E-22 170.4 9.7 179 207-390 178-358 (549)
51 KOG1190 Polypyrimidine tract-b 99.7 5E-17 1.1E-21 158.1 14.2 263 116-390 27-373 (492)
52 KOG0120 Splicing factor U2AF, 99.7 6.1E-17 1.3E-21 166.6 14.5 256 24-286 170-491 (500)
53 PLN03134 glycine-rich RNA-bind 99.7 1.9E-16 4.1E-21 140.6 13.6 86 26-111 31-116 (144)
54 KOG4206 Spliceosomal protein s 99.7 3.9E-16 8.4E-21 142.1 15.2 158 28-192 8-218 (221)
55 KOG4205 RNA-binding protein mu 99.7 3.6E-17 7.8E-22 160.8 8.1 174 116-291 5-180 (311)
56 KOG1365 RNA-binding protein Fu 99.7 1.1E-15 2.3E-20 147.5 17.6 291 24-394 55-366 (508)
57 KOG0120 Splicing factor U2AF, 99.7 2.8E-16 6.1E-21 161.7 12.5 268 117-390 175-492 (500)
58 PLN03134 glycine-rich RNA-bind 99.6 1.8E-15 4E-20 134.3 10.9 81 310-390 33-114 (144)
59 KOG4206 Spliceosomal protein s 99.6 1.4E-14 3.1E-19 132.0 13.4 175 208-388 9-220 (221)
60 PF00076 RRM_1: RNA recognitio 99.6 1.2E-14 2.7E-19 112.9 9.4 70 32-102 1-70 (70)
61 PF00076 RRM_1: RNA recognitio 99.5 2.9E-14 6.3E-19 110.8 9.0 70 314-383 1-70 (70)
62 KOG4307 RNA binding protein RB 99.5 1.1E-13 2.4E-18 142.9 15.5 357 28-386 310-943 (944)
63 KOG1456 Heterogeneous nuclear 99.5 2.4E-12 5.2E-17 124.3 23.4 241 26-276 117-474 (494)
64 KOG0122 Translation initiation 99.5 5E-14 1.1E-18 128.9 11.0 84 26-109 186-269 (270)
65 KOG0105 Alternative splicing f 99.5 6.5E-14 1.4E-18 122.3 10.2 171 207-385 5-185 (241)
66 KOG0106 Alternative splicing f 99.5 1.9E-14 4.2E-19 132.7 7.3 148 30-192 2-167 (216)
67 KOG1457 RNA binding protein (c 99.5 4.6E-13 1E-17 120.6 15.1 155 26-183 31-273 (284)
68 KOG1548 Transcription elongati 99.5 5.6E-13 1.2E-17 127.9 16.2 180 207-389 133-351 (382)
69 KOG0121 Nuclear cap-binding pr 99.5 4.6E-14 9.9E-19 115.9 7.2 81 27-107 34-114 (153)
70 PF14259 RRM_6: RNA recognitio 99.5 1.6E-13 3.6E-18 106.6 8.9 70 32-102 1-70 (70)
71 KOG0106 Alternative splicing f 99.5 3.8E-14 8.3E-19 130.8 4.8 167 210-390 3-171 (216)
72 KOG1548 Transcription elongati 99.5 1.7E-12 3.6E-17 124.6 16.0 166 26-195 131-351 (382)
73 PF14259 RRM_6: RNA recognitio 99.5 3.3E-13 7.2E-18 104.9 9.0 70 314-383 1-70 (70)
74 COG0724 RNA-binding proteins ( 99.5 8.4E-13 1.8E-17 132.3 14.2 147 29-175 115-284 (306)
75 KOG1457 RNA binding protein (c 99.4 9.5E-13 2.1E-17 118.6 12.0 169 207-378 33-274 (284)
76 KOG0149 Predicted RNA-binding 99.4 5.5E-13 1.2E-17 121.8 10.6 79 310-389 11-90 (247)
77 KOG0125 Ataxin 2-binding prote 99.4 2.1E-13 4.5E-18 129.8 8.0 80 310-390 95-174 (376)
78 KOG0122 Translation initiation 99.4 3.1E-13 6.7E-18 123.7 8.8 82 309-390 187-269 (270)
79 KOG0149 Predicted RNA-binding 99.4 2.4E-13 5.3E-18 124.1 7.5 79 28-107 11-89 (247)
80 KOG0107 Alternative splicing f 99.4 3.8E-13 8.3E-18 117.0 8.0 78 28-110 9-86 (195)
81 PLN03120 nucleic acid binding 99.4 6.6E-13 1.4E-17 125.9 10.4 76 29-108 4-79 (260)
82 PLN03120 nucleic acid binding 99.4 1.2E-12 2.6E-17 124.2 10.1 75 311-388 4-78 (260)
83 KOG0126 Predicted RNA-binding 99.4 4.1E-14 8.9E-19 123.4 0.2 79 28-106 34-112 (219)
84 KOG0132 RNA polymerase II C-te 99.4 1E-11 2.2E-16 130.6 17.4 79 310-393 420-498 (894)
85 KOG4207 Predicted splicing fac 99.4 5.8E-13 1.3E-17 118.6 6.1 81 27-107 11-91 (256)
86 KOG0114 Predicted RNA-binding 99.4 2.5E-12 5.3E-17 101.8 8.9 85 22-109 11-95 (124)
87 KOG0107 Alternative splicing f 99.4 1.5E-12 3.3E-17 113.3 7.5 78 309-390 8-85 (195)
88 KOG0128 RNA-binding protein SA 99.3 9.6E-15 2.1E-19 154.9 -8.2 323 28-389 478-814 (881)
89 KOG0113 U1 small nuclear ribon 99.3 3.7E-12 8E-17 119.9 9.9 83 24-106 96-178 (335)
90 PLN03213 repressor of silencin 99.3 6.4E-12 1.4E-16 125.3 11.1 82 310-394 9-92 (759)
91 KOG0130 RNA-binding protein RB 99.3 2.7E-12 5.7E-17 106.5 6.5 82 28-109 71-152 (170)
92 KOG0114 Predicted RNA-binding 99.3 9E-12 2E-16 98.6 9.2 81 310-392 17-97 (124)
93 smart00362 RRM_2 RNA recogniti 99.3 7.8E-12 1.7E-16 97.0 9.0 71 31-103 1-71 (72)
94 PLN03121 nucleic acid binding 99.3 6.8E-12 1.5E-16 117.0 10.0 76 28-107 4-79 (243)
95 smart00362 RRM_2 RNA recogniti 99.3 1.1E-11 2.4E-16 96.2 9.5 72 313-385 1-72 (72)
96 KOG0125 Ataxin 2-binding prote 99.3 4.8E-12 1E-16 120.6 8.4 103 91-196 72-174 (376)
97 KOG4207 Predicted splicing fac 99.3 2.7E-12 5.9E-17 114.4 6.0 79 310-388 12-91 (256)
98 PLN03213 repressor of silencin 99.3 7.7E-12 1.7E-16 124.8 9.8 115 28-149 9-135 (759)
99 PLN03121 nucleic acid binding 99.3 1.1E-11 2.4E-16 115.6 10.0 75 310-387 4-78 (243)
100 smart00360 RRM RNA recognition 99.3 1.3E-11 2.8E-16 95.4 8.7 70 34-103 1-70 (71)
101 KOG0126 Predicted RNA-binding 99.3 5.3E-13 1.2E-17 116.5 -0.0 78 310-387 34-112 (219)
102 KOG0108 mRNA cleavage and poly 99.3 1E-11 2.3E-16 127.8 9.4 81 30-110 19-99 (435)
103 KOG0132 RNA polymerase II C-te 99.3 9.3E-11 2E-15 123.5 15.7 110 206-333 419-528 (894)
104 KOG0113 U1 small nuclear ribon 99.3 1.8E-11 3.8E-16 115.4 8.8 83 308-390 98-181 (335)
105 COG0724 RNA-binding proteins ( 99.2 3.5E-11 7.5E-16 120.5 11.5 164 208-371 115-286 (306)
106 KOG0111 Cyclophilin-type pepti 99.2 3.9E-12 8.4E-17 114.3 3.7 82 310-391 9-91 (298)
107 cd00590 RRM RRM (RNA recogniti 99.2 5E-11 1.1E-15 93.0 9.7 74 31-105 1-74 (74)
108 smart00360 RRM RNA recognition 99.2 4.3E-11 9.3E-16 92.4 8.8 70 316-385 1-71 (71)
109 KOG0121 Nuclear cap-binding pr 99.2 1.8E-11 4E-16 100.8 6.8 82 310-391 35-117 (153)
110 cd00590 RRM RRM (RNA recogniti 99.2 8.6E-11 1.9E-15 91.6 10.0 74 313-386 1-74 (74)
111 PF13893 RRM_5: RNA recognitio 99.2 8.5E-11 1.8E-15 86.8 8.4 56 328-387 1-56 (56)
112 KOG4660 Protein Mei2, essentia 99.2 5.3E-11 1.1E-15 121.7 8.4 153 26-190 72-244 (549)
113 KOG0108 mRNA cleavage and poly 99.2 6.7E-11 1.5E-15 121.9 8.8 83 312-394 19-102 (435)
114 KOG0111 Cyclophilin-type pepti 99.2 2.2E-11 4.8E-16 109.5 4.5 83 27-109 8-90 (298)
115 PF13893 RRM_5: RNA recognitio 99.1 1.3E-10 2.9E-15 85.7 7.1 56 46-106 1-56 (56)
116 KOG1365 RNA-binding protein Fu 99.1 1.7E-10 3.6E-15 112.0 9.1 162 29-192 161-358 (508)
117 smart00361 RRM_1 RNA recogniti 99.1 2.2E-10 4.7E-15 88.8 8.0 61 325-385 2-70 (70)
118 KOG0130 RNA-binding protein RB 99.1 1.2E-10 2.7E-15 96.7 6.1 82 309-390 70-152 (170)
119 smart00361 RRM_1 RNA recogniti 99.1 3E-10 6.5E-15 88.0 7.8 61 43-103 2-69 (70)
120 KOG4454 RNA binding protein (R 99.1 2.7E-11 6E-16 109.0 1.7 151 25-188 5-155 (267)
121 KOG0129 Predicted RNA-binding 99.0 2.9E-09 6.2E-14 108.2 13.8 152 26-177 256-432 (520)
122 KOG0128 RNA-binding protein SA 99.0 3E-11 6.5E-16 128.8 -0.6 232 28-283 570-811 (881)
123 KOG4307 RNA binding protein RB 99.0 2.5E-09 5.4E-14 111.3 12.5 246 120-369 314-611 (944)
124 KOG4208 Nucleolar RNA-binding 99.0 1.2E-09 2.6E-14 98.2 7.5 82 27-108 47-129 (214)
125 KOG0226 RNA-binding proteins [ 99.0 6E-10 1.3E-14 102.9 5.5 168 211-390 99-270 (290)
126 KOG4849 mRNA cleavage factor I 98.9 2.2E-08 4.7E-13 96.4 14.8 75 311-385 80-157 (498)
127 KOG0415 Predicted peptidyl pro 98.9 2.1E-09 4.6E-14 103.5 7.4 87 22-108 232-318 (479)
128 KOG0153 Predicted RNA-binding 98.9 3.1E-09 6.8E-14 102.6 7.6 79 306-389 223-302 (377)
129 KOG4454 RNA binding protein (R 98.8 1.1E-09 2.3E-14 98.9 2.2 132 207-370 8-143 (267)
130 KOG0415 Predicted peptidyl pro 98.8 6.6E-09 1.4E-13 100.2 6.3 86 306-391 234-320 (479)
131 KOG0226 RNA-binding proteins [ 98.8 8.3E-09 1.8E-13 95.5 5.4 172 120-291 99-274 (290)
132 KOG4208 Nucleolar RNA-binding 98.8 1.7E-08 3.7E-13 90.9 7.1 80 311-390 49-130 (214)
133 KOG4661 Hsp27-ERE-TATA-binding 98.7 4.3E-08 9.3E-13 99.9 9.6 84 27-110 403-486 (940)
134 KOG0153 Predicted RNA-binding 98.7 4.5E-08 9.8E-13 94.7 8.7 77 26-108 225-302 (377)
135 KOG0112 Large RNA-binding prot 98.7 1.1E-08 2.4E-13 110.0 3.9 160 206-390 370-531 (975)
136 PF04059 RRM_2: RNA recognitio 98.7 1.7E-07 3.8E-12 76.0 9.5 78 30-107 2-85 (97)
137 KOG0129 Predicted RNA-binding 98.7 1.7E-07 3.8E-12 95.5 11.7 161 207-371 258-432 (520)
138 KOG0533 RRM motif-containing p 98.6 7.3E-08 1.6E-12 91.5 8.0 80 311-390 83-162 (243)
139 KOG4210 Nuclear localization s 98.6 3.1E-08 6.6E-13 97.9 4.6 168 28-196 87-264 (285)
140 KOG0112 Large RNA-binding prot 98.6 2.2E-08 4.8E-13 107.7 3.7 163 22-194 365-529 (975)
141 KOG4661 Hsp27-ERE-TATA-binding 98.5 1.5E-07 3.3E-12 96.0 7.1 81 309-389 403-484 (940)
142 KOG0151 Predicted splicing reg 98.5 3E-07 6.5E-12 96.6 7.7 83 26-108 171-256 (877)
143 KOG4210 Nuclear localization s 98.5 1.1E-07 2.4E-12 93.9 4.4 175 207-390 87-264 (285)
144 KOG0116 RasGAP SH3 binding pro 98.5 4.6E-07 1E-11 93.2 8.5 80 27-107 286-365 (419)
145 KOG0533 RRM motif-containing p 98.5 5.8E-07 1.3E-11 85.5 8.3 79 29-108 83-161 (243)
146 KOG0116 RasGAP SH3 binding pro 98.3 1.2E-06 2.6E-11 90.2 8.0 79 310-389 287-366 (419)
147 KOG0151 Predicted splicing reg 98.3 1.9E-06 4.2E-11 90.7 9.2 82 308-389 171-256 (877)
148 PF04059 RRM_2: RNA recognitio 98.3 3.9E-06 8.4E-11 68.2 8.7 78 312-389 2-86 (97)
149 KOG4209 Splicing factor RNPS1, 98.3 1.1E-06 2.5E-11 83.9 5.8 82 26-108 98-179 (231)
150 PF11608 Limkain-b1: Limkain b 98.2 5.1E-06 1.1E-10 64.0 7.6 70 30-109 3-77 (90)
151 KOG2193 IGF-II mRNA-binding pr 98.2 1.6E-07 3.5E-12 92.7 -1.3 154 30-195 2-156 (584)
152 KOG4660 Protein Mei2, essentia 98.2 8.7E-07 1.9E-11 91.3 3.4 71 309-383 73-143 (549)
153 KOG2193 IGF-II mRNA-binding pr 98.0 2.1E-06 4.6E-11 85.0 2.2 155 209-390 2-157 (584)
154 KOG4209 Splicing factor RNPS1, 98.0 7.1E-06 1.5E-10 78.5 5.7 81 308-389 98-179 (231)
155 KOG4676 Splicing factor, argin 98.0 2.7E-06 5.9E-11 83.6 1.9 204 30-275 8-214 (479)
156 PF11608 Limkain-b1: Limkain b 97.9 3.3E-05 7.2E-10 59.6 6.4 68 313-389 4-76 (90)
157 PF08777 RRM_3: RNA binding mo 97.8 4E-05 8.7E-10 63.9 6.2 77 311-392 1-82 (105)
158 KOG1995 Conserved Zn-finger pr 97.7 7E-05 1.5E-09 73.7 6.1 87 24-110 61-155 (351)
159 KOG1924 RhoA GTPase effector D 97.7 0.00021 4.5E-09 76.6 9.7 41 508-548 670-720 (1102)
160 PF08777 RRM_3: RNA binding mo 97.6 0.00011 2.4E-09 61.3 5.8 59 30-94 2-60 (105)
161 COG5175 MOT2 Transcriptional r 97.6 0.00019 4.2E-09 69.4 7.4 91 17-107 102-201 (480)
162 KOG1924 RhoA GTPase effector D 97.6 0.00029 6.3E-09 75.5 9.1 16 40-55 82-97 (1102)
163 KOG4849 mRNA cleavage factor I 97.6 9.1E-05 2E-09 71.9 4.8 76 29-104 80-157 (498)
164 KOG0115 RNA-binding protein p5 97.5 0.00067 1.4E-08 63.7 9.7 93 260-377 5-97 (275)
165 KOG4676 Splicing factor, argin 97.5 6.1E-05 1.3E-09 74.3 2.5 213 116-387 6-223 (479)
166 KOG1995 Conserved Zn-finger pr 97.5 0.0001 2.2E-09 72.6 4.0 84 308-391 63-155 (351)
167 KOG0115 RNA-binding protein p5 97.3 0.00054 1.2E-08 64.3 6.5 89 82-179 5-93 (275)
168 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00069 1.5E-08 48.8 5.3 52 30-88 2-53 (53)
169 KOG2314 Translation initiation 97.2 0.00088 1.9E-08 69.4 7.6 78 310-387 57-141 (698)
170 COG5175 MOT2 Transcriptional r 97.2 0.00077 1.7E-08 65.3 6.6 81 310-390 113-203 (480)
171 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.0013 2.9E-08 47.3 4.8 52 312-369 2-53 (53)
172 KOG3152 TBP-binding protein, a 96.9 0.00055 1.2E-08 64.2 2.8 74 28-101 73-158 (278)
173 KOG2202 U2 snRNP splicing fact 96.9 0.00046 1E-08 65.0 2.1 64 326-389 83-147 (260)
174 KOG1855 Predicted RNA-binding 96.8 0.00093 2E-08 67.1 3.8 69 26-94 228-309 (484)
175 KOG2202 U2 snRNP splicing fact 96.8 0.00061 1.3E-08 64.2 1.8 63 44-107 83-146 (260)
176 PF05172 Nup35_RRM: Nup53/35/4 96.7 0.0062 1.3E-07 50.0 6.8 77 28-106 5-89 (100)
177 KOG3152 TBP-binding protein, a 96.6 0.0014 3E-08 61.6 3.0 69 313-381 76-157 (278)
178 KOG0943 Predicted ubiquitin-pr 96.5 0.0015 3.3E-08 72.8 2.8 65 510-574 2606-2672(3015)
179 PF08952 DUF1866: Domain of un 96.5 0.01 2.3E-07 51.7 7.2 58 326-391 51-108 (146)
180 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.014 2.9E-07 48.0 7.1 76 310-387 5-89 (100)
181 PF08952 DUF1866: Domain of un 96.4 0.009 2E-07 52.1 6.3 74 26-108 24-106 (146)
182 KOG2416 Acinus (induces apopto 96.4 0.0088 1.9E-07 62.7 7.1 84 308-396 441-528 (718)
183 KOG1996 mRNA splicing factor [ 96.3 0.014 3E-07 56.0 7.7 69 325-393 300-370 (378)
184 PF10309 DUF2414: Protein of u 96.0 0.033 7.3E-07 41.1 6.6 54 312-372 6-62 (62)
185 KOG2314 Translation initiation 96.0 0.012 2.5E-07 61.5 5.7 79 116-194 57-142 (698)
186 PF08675 RNA_bind: RNA binding 95.8 0.032 6.9E-07 43.5 6.2 54 30-92 10-63 (87)
187 KOG1996 mRNA splicing factor [ 95.8 0.026 5.6E-07 54.1 6.7 66 43-108 300-366 (378)
188 KOG1855 Predicted RNA-binding 95.7 0.02 4.3E-07 57.9 6.0 66 116-181 230-309 (484)
189 PF15023 DUF4523: Protein of u 95.7 0.058 1.3E-06 46.3 7.9 76 26-109 83-162 (166)
190 KOG2416 Acinus (induces apopto 94.9 0.022 4.8E-07 59.8 3.7 82 22-109 437-522 (718)
191 PF10309 DUF2414: Protein of u 94.9 0.16 3.4E-06 37.6 7.0 53 30-91 6-62 (62)
192 PF10567 Nab6_mRNP_bdg: RNA-re 94.7 0.97 2.1E-05 44.0 13.5 157 22-179 8-212 (309)
193 PF15023 DUF4523: Protein of u 94.2 0.12 2.6E-06 44.5 5.7 75 308-389 83-161 (166)
194 PF04847 Calcipressin: Calcipr 94.2 0.08 1.7E-06 48.9 5.1 61 324-389 8-70 (184)
195 PF08675 RNA_bind: RNA binding 94.1 0.17 3.6E-06 39.6 5.9 54 313-374 11-64 (87)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.047 1E-06 50.3 3.4 70 28-97 6-81 (176)
197 PF07576 BRAP2: BRCA1-associat 93.9 0.95 2.1E-05 38.0 10.6 75 29-105 13-91 (110)
198 KOG2068 MOT2 transcription fac 93.7 0.032 6.9E-07 55.1 1.6 78 312-389 78-162 (327)
199 KOG2135 Proteins containing th 93.7 0.039 8.5E-07 56.5 2.2 78 26-110 369-447 (526)
200 PF04847 Calcipressin: Calcipr 93.4 0.17 3.7E-06 46.7 5.8 62 42-109 8-71 (184)
201 KOG2068 MOT2 transcription fac 93.2 0.041 8.9E-07 54.3 1.5 88 21-108 69-162 (327)
202 KOG2591 c-Mpl binding protein, 92.3 0.32 6.9E-06 51.1 6.4 83 83-179 149-233 (684)
203 KOG2591 c-Mpl binding protein, 91.5 0.47 1E-05 49.8 6.7 71 310-386 174-248 (684)
204 KOG2135 Proteins containing th 91.5 0.11 2.3E-06 53.4 2.0 73 312-390 373-446 (526)
205 KOG0804 Cytoplasmic Zn-finger 91.4 0.68 1.5E-05 47.6 7.5 68 29-98 74-142 (493)
206 PF11767 SET_assoc: Histone ly 91.4 0.66 1.4E-05 34.9 5.7 55 39-102 10-64 (66)
207 KOG4574 RNA-binding protein (c 91.0 0.14 3.1E-06 56.2 2.5 74 31-110 300-375 (1007)
208 PF10567 Nab6_mRNP_bdg: RNA-re 90.9 6.7 0.00014 38.4 13.3 182 208-390 15-232 (309)
209 PF03880 DbpA: DbpA RNA bindin 90.8 0.98 2.1E-05 35.0 6.4 60 320-387 10-74 (74)
210 PF11767 SET_assoc: Histone ly 90.1 1.6 3.4E-05 32.9 6.7 55 322-384 11-65 (66)
211 PF03467 Smg4_UPF3: Smg-4/UPF3 88.8 0.95 2.1E-05 41.7 5.7 68 117-184 7-81 (176)
212 KOG4285 Mitotic phosphoprotein 87.8 1.4 3.1E-05 42.9 6.3 65 29-101 197-261 (350)
213 KOG4574 RNA-binding protein (c 87.5 0.42 9E-06 52.8 2.9 72 314-390 301-374 (1007)
214 PF07576 BRAP2: BRCA1-associat 87.1 3.8 8.2E-05 34.4 7.8 65 314-379 16-81 (110)
215 PF07292 NID: Nmi/IFP 35 domai 86.7 0.85 1.9E-05 36.4 3.5 66 74-139 1-74 (88)
216 KOG2253 U1 snRNP complex, subu 86.7 0.17 3.7E-06 54.3 -0.6 114 22-144 33-162 (668)
217 PF03880 DbpA: DbpA RNA bindin 86.5 2.5 5.4E-05 32.7 6.1 58 39-105 11-73 (74)
218 KOG2253 U1 snRNP complex, subu 85.8 0.051 1.1E-06 58.2 -4.9 71 206-284 38-108 (668)
219 KOG4285 Mitotic phosphoprotein 85.7 1.5 3.2E-05 42.8 5.2 64 312-382 198-261 (350)
220 KOG0804 Cytoplasmic Zn-finger 85.2 3.5 7.6E-05 42.6 7.9 68 117-185 74-142 (493)
221 KOG2318 Uncharacterized conser 80.2 8.5 0.00018 41.1 8.6 81 26-106 171-305 (650)
222 KOG2236 Uncharacterized conser 73.1 20 0.00043 37.5 8.8 13 251-263 261-273 (483)
223 PF07292 NID: Nmi/IFP 35 domai 71.8 2.9 6.2E-05 33.5 2.0 70 161-230 1-74 (88)
224 KOG2391 Vacuolar sorting prote 69.5 30 0.00064 34.8 8.8 25 545-569 261-285 (365)
225 PF14111 DUF4283: Domain of un 68.1 8.4 0.00018 34.3 4.6 116 31-152 17-140 (153)
226 KOG2318 Uncharacterized conser 66.7 16 0.00034 39.2 6.7 78 310-387 173-305 (650)
227 KOG4019 Calcineurin-mediated s 65.0 4.8 0.0001 36.4 2.2 75 29-109 10-90 (193)
228 KOG4410 5-formyltetrahydrofola 59.5 18 0.00038 35.2 5.0 56 22-83 323-379 (396)
229 PRK14548 50S ribosomal protein 59.2 35 0.00076 27.1 5.9 58 31-91 22-81 (84)
230 PF14111 DUF4283: Domain of un 57.6 7 0.00015 34.8 2.1 85 157-242 54-139 (153)
231 KOG2891 Surface glycoprotein [ 57.4 33 0.00071 33.2 6.4 108 127-241 47-194 (445)
232 KOG4483 Uncharacterized conser 55.5 23 0.0005 36.1 5.3 64 312-382 392-456 (528)
233 KOG4365 Uncharacterized conser 55.1 3 6.5E-05 42.8 -0.9 80 313-393 5-85 (572)
234 KOG2236 Uncharacterized conser 53.7 29 0.00063 36.3 5.9 15 357-372 319-333 (483)
235 KOG4019 Calcineurin-mediated s 53.2 8.5 0.00018 34.9 1.7 72 313-389 12-89 (193)
236 TIGR03636 L23_arch archaeal ri 51.8 59 0.0013 25.3 6.0 58 31-91 15-74 (77)
237 PF15513 DUF4651: Domain of un 49.2 33 0.00071 25.4 3.9 19 326-344 9-27 (62)
238 KOG4483 Uncharacterized conser 49.1 29 0.00063 35.4 4.9 59 29-95 391-450 (528)
239 PRK14548 50S ribosomal protein 47.0 60 0.0013 25.8 5.5 57 313-371 22-80 (84)
240 TIGR02542 B_forsyth_147 Bacter 45.3 75 0.0016 26.6 5.8 103 37-168 11-129 (145)
241 TIGR03636 L23_arch archaeal ri 45.2 72 0.0016 24.9 5.5 58 313-372 15-74 (77)
242 PHA03378 EBNA-3B; Provisional 42.8 2.7E+02 0.0058 31.0 11.0 12 311-322 538-549 (991)
243 PF07530 PRE_C2HC: Associated 39.9 70 0.0015 24.2 4.7 63 44-109 2-65 (68)
244 PRK11901 hypothetical protein; 39.9 91 0.002 31.4 6.7 65 32-98 245-311 (327)
245 KOG1295 Nonsense-mediated deca 38.0 31 0.00068 35.2 3.2 66 29-94 7-75 (376)
246 smart00596 PRE_C2HC PRE_C2HC d 37.5 73 0.0016 24.2 4.3 62 44-108 2-64 (69)
247 PF03468 XS: XS domain; Inter 35.1 50 0.0011 28.0 3.6 40 42-84 30-69 (116)
248 PF03468 XS: XS domain; Inter 34.8 45 0.00097 28.3 3.3 40 129-170 29-68 (116)
249 COG5638 Uncharacterized conser 33.8 1.8E+02 0.0038 30.1 7.7 39 26-64 143-186 (622)
250 PF15513 DUF4651: Domain of un 33.7 75 0.0016 23.5 3.7 19 223-241 9-27 (62)
251 KOG2891 Surface glycoprotein [ 33.4 52 0.0011 31.9 3.8 36 310-345 148-195 (445)
252 KOG4672 Uncharacterized conser 30.5 4.1E+02 0.0089 27.7 9.6 23 314-336 219-241 (487)
253 PF14893 PNMA: PNMA 29.5 72 0.0016 32.5 4.3 78 27-108 16-96 (331)
254 PF11411 DNA_ligase_IV: DNA li 28.9 41 0.0009 21.9 1.6 17 39-55 19-35 (36)
255 KOG2295 C2H2 Zn-finger protein 28.6 9.4 0.0002 40.6 -2.2 74 27-100 229-302 (648)
256 KOG4410 5-formyltetrahydrofola 28.1 67 0.0015 31.4 3.5 48 311-363 330-378 (396)
257 COG3266 DamX Uncharacterized p 27.9 1.9E+02 0.0042 28.2 6.5 60 29-93 211-272 (292)
258 KOG4213 RNA-binding protein La 26.2 91 0.002 28.4 3.8 53 312-371 112-169 (205)
259 PF02714 DUF221: Domain of unk 25.4 1E+02 0.0022 31.3 4.7 57 74-140 1-57 (325)
260 COG5193 LHP1 La protein, small 25.4 35 0.00075 35.1 1.2 63 27-89 172-244 (438)
261 COG5180 PBP1 Protein interacti 25.1 4.3E+02 0.0094 28.0 8.8 13 255-267 329-341 (654)
262 KOG3424 40S ribosomal protein 24.0 2.3E+02 0.005 23.9 5.4 47 39-86 33-84 (132)
263 KOG4213 RNA-binding protein La 23.6 90 0.002 28.4 3.3 69 29-105 111-183 (205)
264 KOG2295 C2H2 Zn-finger protein 22.0 24 0.00053 37.7 -0.6 74 309-382 229-303 (648)
265 COG5178 PRP8 U5 snRNP spliceos 21.8 74 0.0016 37.4 2.9 26 437-465 5-30 (2365)
266 PTZ00191 60S ribosomal protein 21.6 2.4E+02 0.0052 24.9 5.5 56 313-370 83-140 (145)
267 KOG4008 rRNA processing protei 20.7 83 0.0018 30.0 2.6 36 24-59 35-70 (261)
268 COG5638 Uncharacterized conser 20.6 2.1E+02 0.0046 29.6 5.5 39 308-346 143-186 (622)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.4e-93 Score=785.48 Aligned_cols=531 Identities=56% Similarity=0.875 Sum_probs=431.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
+||||||||.++||++|+++|++||.|.+|+||+|..|++++|||||+|.+.++|++|++.+|+..|.|++|+|+|+.++
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEE
Q 007673 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 189 (593)
Q Consensus 110 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~ 189 (593)
++.+..+.++|||+||+.++++++|+++|+.||.|.+|++..+.+|+++|||||+|.+.++|.+|++.+||..++++.+.
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHH
Q 007673 190 VGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEAL 269 (593)
Q Consensus 190 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l 269 (593)
|..+..+..+. ......+++|||+||+.++++++|+++|+.||.|.++.++++.+++++|||||+|.+.++|.+|++.+
T Consensus 161 v~~~~~~~~~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 161 VGRFIKKHERE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred Eeccccccccc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 98887766553 12345678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccC----CceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEee
Q 007673 270 NGKKFD----DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMR 345 (593)
Q Consensus 270 ~g~~~~----~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~ 345 (593)
++..+. ++.++|.++.++.++..++.........+......+++|||+||++++++++|+++|+.||.|++|+++.
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 999999 9999999999999888777777666666656677889999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchHHHHHHHHHhhhcCCCCCCCCC-CCCCCCCCCCCC
Q 007673 346 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPS-VPPRMPMYPPGP 424 (593)
Q Consensus 346 ~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~ 424 (593)
+.+|.++|||||+|.+.++|.+|+..|||+.++|++|+|.++++++.++...+.++.+..+....++ ..+..+.+
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q~~~~~~~~~~~~p~~~~~---- 395 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQLQPRMRQLPMGSPMGGAM---- 395 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHHhhhhccCCCCCCCCCCcc----
Confidence 9999999999999999999999999999999999999999999999999888877766332111110 00000000
Q ss_pred CCCCCCCCCCCCCCCCCC---------CCCCCCCCCC--CCCCCC-CCCCCCCCC----CCCCC---CCCCCCCCCCC-C
Q 007673 425 SGLGQQFLYGQAPPAIIP---------PQMPPRGHAY--RYPLGR-NMQDFPFDM----GAGSM---LPVPVDMGAGI-P 484 (593)
Q Consensus 425 ~~~~~~~~~~~~pp~~~p---------p~~~p~~~~~--~~pp~~-~~p~~~~p~----~~~~~---~p~~~~~~~~~-p 484 (593)
+++.+++++++++++ ++++++++++ ..|.++ ++++.++++ +..++ ++.+|+++... |
T Consensus 396 ---~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 472 (562)
T TIGR01628 396 ---GQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLP 472 (562)
T ss_pred ---cCCCccCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCcccccccccccCCCcCCCccccCCC
Confidence 111111111100000 0000000000 000000 000000000 00000 00011111000 1
Q ss_pred CCCC------CCCCCCccccchhhhcCCCHHHHHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHH
Q 007673 485 RRDA------SVGQPMPITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKA 558 (593)
Q Consensus 485 ~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~ 558 (593)
.++. +..++.+.+.++++|++++|++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~p~~q~~~lg~~~~~~~~~~~~~~~~~~tgm~l~~~~~~~~~~~~~~~~~~~ 552 (562)
T TIGR01628 473 LSQDLPQPQSTASQGGQNKKLAQVLASATPQMQKQVLGERLFPLVEAIEPALAAKITGMLLEMDNSELLHLLESPELLKS 552 (562)
T ss_pred CCcccccccCCccccccchhHHHHHhhCCHHHHHHHHHHHhHHHHHhhChhhcCcceEEEecCCHHHHHHHhcCHHHHHH
Confidence 0000 0011112356889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 007673 559 KVAEAMEVLR 568 (593)
Q Consensus 559 ~v~~a~~~l~ 568 (593)
||+||++||+
T Consensus 553 ~~~~~~~~~~ 562 (562)
T TIGR01628 553 KVDEALEVLK 562 (562)
T ss_pred HHHHHHHHhC
Confidence 9999999984
No 2
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-59 Score=476.79 Aligned_cols=359 Identities=65% Similarity=1.016 Sum_probs=339.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
.+|||| +++||++|+++|+.+|+|.+|+||||. | |+|||||+|.+++||++||+++|+..++|++|||||++++
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 589999 899999999999999999999999999 7 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEE
Q 007673 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 189 (593)
Q Consensus 110 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~ 189 (593)
++. |||+||++++|.++|+++|+.||+|++|++..+..| ++|| ||+|+++++|.+|++.+||..+++++++
T Consensus 76 ~~~-------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~ 146 (369)
T KOG0123|consen 76 PSL-------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIY 146 (369)
T ss_pred Cce-------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeE
Confidence 887 999999999999999999999999999999999888 9999 9999999999999999999999999999
Q ss_pred eccccchhhhHHHHh--hccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHH
Q 007673 190 VGHFLRKQERETVAI--KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVE 267 (593)
Q Consensus 190 v~~~~~~~~~~~~~~--~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~ 267 (593)
|..+.++.++..... ....++++++|++.+.+++.|.++|+.+|.|.++.++.+..+++++|+||+|+++++|..|++
T Consensus 147 vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~ 226 (369)
T KOG0123|consen 147 VGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVE 226 (369)
T ss_pred EeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHH
Confidence 999998887653332 356789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC
Q 007673 268 ALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP 347 (593)
Q Consensus 268 ~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~ 347 (593)
.+++..+.+..++|..++++.++...+...+..............+|||+|++..++++.|+++|+.||+|++++|+.+.
T Consensus 227 ~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~ 306 (369)
T KOG0123|consen 227 TLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE 306 (369)
T ss_pred hccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc
Confidence 99999999999999999999999999998888777777778889999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchHHHHHHHHHhhhc
Q 007673 348 SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403 (593)
Q Consensus 348 ~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r~~~~~~~~~~ 403 (593)
.|+++||+||+|.+.++|.+|+..+|+..+.+++++|.+++++..++.+.+..+.+
T Consensus 307 ~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~ 362 (369)
T KOG0123|consen 307 NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGA 362 (369)
T ss_pred CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhcce
Confidence 99999999999999999999999999999999999999999888887776655444
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.6e-48 Score=417.72 Aligned_cols=348 Identities=20% Similarity=0.248 Sum_probs=279.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc--CCcccCCcEEEEee
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL--NFTPLNNKSIRIMY 105 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l--n~~~i~g~~i~v~~ 105 (593)
++++|||+|||+++||++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.+ ++..+.|++|+|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999999864 479999999999999999974 67889999999999
Q ss_pred ccCCCCCCC----------CCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHH
Q 007673 106 SHRDPSIRK----------SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 175 (593)
Q Consensus 106 s~~~~~~~~----------~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al 175 (593)
+......+. +...+|+|+||+.++|+++|+++|+.||.|.+|++.++. .+++|||+|.+.++|.+|+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~---~~~~afVef~~~~~A~~A~ 151 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN---NVFQALVEFESVNSAQHAK 151 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC---CceEEEEEECCHHHHHHHH
Confidence 865432211 122368999999999999999999999999999998753 2479999999999999999
Q ss_pred HHhCCceecC--eeEEeccccchh--------------------hh-----------HHH--------------------
Q 007673 176 DKLNGMLIND--KQVFVGHFLRKQ--------------------ER-----------ETV-------------------- 202 (593)
Q Consensus 176 ~~l~g~~~~g--~~l~v~~~~~~~--------------------~~-----------~~~-------------------- 202 (593)
+.|||..+.+ +.+.|.+..... ++ ...
T Consensus 152 ~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 231 (481)
T TIGR01649 152 AALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGP 231 (481)
T ss_pred HHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCC
Confidence 9999998854 356665443211 00 000
Q ss_pred --------------------------------------HhhccccceeccCCCC-CCCHHHHHHhhccCCCeeEEEEeeC
Q 007673 203 --------------------------------------AIKTKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRD 243 (593)
Q Consensus 203 --------------------------------------~~~~~~~~l~V~nlp~-~~te~~l~~~F~~~G~v~~v~i~~~ 243 (593)
......++|||+||+. .+++++|+++|+.||.|.+|.++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~ 311 (481)
T TIGR01649 232 LAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN 311 (481)
T ss_pred CCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC
Confidence 0001345899999997 6999999999999999999999987
Q ss_pred CCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHH-------Hh--hhHHhhhhhh---------
Q 007673 244 GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQE-------LK--GQFEQAMKET--------- 305 (593)
Q Consensus 244 ~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~-------~~--~~~~~~~~~~--------- 305 (593)
. +|||||+|.+.++|..|+..|++..+.|+.|.|.++......... .. ..+.......
T Consensus 312 ~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~ 387 (481)
T TIGR01649 312 K----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANK 387 (481)
T ss_pred C----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccc
Confidence 3 689999999999999999999999999999999987543211000 00 0000000000
Q ss_pred -hcccccceeeeccCCCCCCHHHHHHHhhcCCC--eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCee-
Q 007673 306 -VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP- 381 (593)
Q Consensus 306 -~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~--i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~- 381 (593)
....++.+|||+|||.++++++|+++|+.||. |..++++.+.++ .+++|||+|.+.++|.+|+..|||..|.++.
T Consensus 388 ~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~ 466 (481)
T TIGR01649 388 NNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNG 466 (481)
T ss_pred cccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCC
Confidence 01235678999999999999999999999998 888988765544 5889999999999999999999999999885
Q ss_pred -----eEEEeccc
Q 007673 382 -----LYVAVAQR 389 (593)
Q Consensus 382 -----l~v~~~~~ 389 (593)
|+|+|+++
T Consensus 467 ~~~~~lkv~fs~~ 479 (481)
T TIGR01649 467 SAPYHLKVSFSTS 479 (481)
T ss_pred CccceEEEEeccC
Confidence 99999875
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9.9e-44 Score=369.29 Aligned_cols=341 Identities=26% Similarity=0.431 Sum_probs=235.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
+.++|||+|||.++||++|+++|+.||+|.+|+|++|+.+++++|||||+|.+.++|++||+.||+..|.|+.|+|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecC-
Q 007673 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLIND- 185 (593)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g- 185 (593)
.... .....+|||+|||.++++++|+++|+.||.|..+++..+ .++.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 82 ~~~~--~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSD--SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred cccc--ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 5322 224568999999999999999999999999999999988 477899999999999999999999999998877
Q ss_pred -eeEEeccccchhhhHHHHhhc---cc--cceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCH
Q 007673 186 -KQVFVGHFLRKQERETVAIKT---KF--NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259 (593)
Q Consensus 186 -~~l~v~~~~~~~~~~~~~~~~---~~--~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~ 259 (593)
..+.+.+.............. .. .......++..+.. ..-+.+.... . ........+.....
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~---~-~~~~~~~~~~~~~~- 227 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTA-------AGIGPMHHAA---A-RFRPSAGDFTAVLA- 227 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccc-------cCCCCccCcc---c-ccccCcchhhhhhh-
Confidence 456666554332111000000 00 00000000000000 0000000000 0 00000000000000
Q ss_pred HHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCee
Q 007673 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 339 (593)
Q Consensus 260 e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~ 339 (593)
............ .............. ...............+.+|||+|||.++++++|+++|++||.|.
T Consensus 228 -------~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~ 297 (352)
T TIGR01661 228 -------HQQQQHAVAQQH-AAQRASPPATDGQT--AGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQ 297 (352)
T ss_pred -------hhhhhccccccc-ccccCCCccccccc--cccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeE
Confidence 000000000000 00000000000000 00000001111123455799999999999999999999999999
Q ss_pred EEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchHH
Q 007673 340 SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392 (593)
Q Consensus 340 ~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~ 392 (593)
+++|+.|. +|.++|||||+|.+.++|.+|++.|||..|+||.|.|.|+..|..
T Consensus 298 ~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 298 NVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred EEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999986 899999999999999999999999999999999999999987653
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.7e-41 Score=369.40 Aligned_cols=258 Identities=40% Similarity=0.664 Sum_probs=233.4
Q ss_pred cEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC-CCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchh
Q 007673 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197 (593)
Q Consensus 119 ~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 197 (593)
+|||+|||.++|+++|+++|+.||.|.+|+|..|. +++++|||||+|.+.++|.+|++.+++..++|+.|+|.+.....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999994 68999999999999999999999999999999999998875432
Q ss_pred hhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCc
Q 007673 198 ERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDR 277 (593)
Q Consensus 198 ~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~ 277 (593)
.. .....++|||+||+.++++++|+++|+.||.|.+|.+..+.+|+++|||||.|++.++|..|++.+++..+.++
T Consensus 82 ~~----~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~ 157 (562)
T TIGR01628 82 SL----RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK 157 (562)
T ss_pred cc----cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCc
Confidence 21 12345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEE
Q 007673 278 EWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFV 357 (593)
Q Consensus 278 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV 357 (593)
.+++.....+.++.. ......++|||+||+.++|+++|+++|+.||.|.+++++.+.+|.++|||||
T Consensus 158 ~i~v~~~~~~~~~~~-------------~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV 224 (562)
T TIGR01628 158 EVYVGRFIKKHEREA-------------APLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFV 224 (562)
T ss_pred eEEEecccccccccc-------------ccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEE
Confidence 999987766554420 1122446899999999999999999999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHhCCceec----CeeeEEEeccchHHH
Q 007673 358 AFSTPEEASRALAEMNGKMIV----SKPLYVAVAQRKEER 393 (593)
Q Consensus 358 ~f~~~~~A~~A~~~~~~~~~~----~~~l~v~~~~~~~~r 393 (593)
+|.+.++|.+|++.+||..+. |+.|.|.+++.+..+
T Consensus 225 ~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er 264 (562)
T TIGR01628 225 NFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAER 264 (562)
T ss_pred EECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhh
Confidence 999999999999999999999 999999999877665
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-39 Score=316.03 Aligned_cols=284 Identities=26% Similarity=0.374 Sum_probs=240.1
Q ss_pred EEecCHHHHHHHHHhcCCcccCCcEEEEeeccCCC--------CCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEE
Q 007673 76 VNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP--------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC 147 (593)
Q Consensus 76 V~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~~--------~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~ 147 (593)
-...+.++|.++|.+-. |..|.|.-.+++- .......+.|||+.||.++.+++|..+|+..|.|..+
T Consensus 39 ~~~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~el 113 (506)
T KOG0117|consen 39 AGVQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYEL 113 (506)
T ss_pred cccccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeE
Confidence 33445778888887543 5666666555432 1223456789999999999999999999999999999
Q ss_pred EEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCcee-cCeeEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHH
Q 007673 148 KIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI-NDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDL 225 (593)
Q Consensus 148 ~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~-~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l 225 (593)
++.+| .+|.++|||||.|.+.++|.+|++.||+..| .|+.|.|..+ ..++.|||+|+|+++++++|
T Consensus 114 RLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S------------van~RLFiG~IPK~k~keeI 181 (506)
T KOG0117|consen 114 RLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS------------VANCRLFIGNIPKTKKKEEI 181 (506)
T ss_pred EEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe------------eecceeEeccCCccccHHHH
Confidence 99999 7999999999999999999999999999877 5788877654 34677999999999999999
Q ss_pred HHhhccCCC-eeEEEEeeC--CCCCcceeEEEEeCCHHHHHHHHHHHCC--CccCCceEEEeccccchHHHHHHhhhHHh
Q 007673 226 KKIFGEYGT-ITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEALNG--KKFDDREWYVGKAQKKSEREQELKGQFEQ 300 (593)
Q Consensus 226 ~~~F~~~G~-v~~v~i~~~--~~g~~~g~afV~F~~~e~A~~Ai~~l~g--~~~~~~~l~v~~a~~~~~~~~~~~~~~~~ 300 (593)
.+.|++.++ |.+|.+... +..++||||||+|+++.+|..|.+.|-. ..+.|..+.|.||.+..+-..+..
T Consensus 182 lee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~m----- 256 (506)
T KOG0117|consen 182 LEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTM----- 256 (506)
T ss_pred HHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhh-----
Confidence 999999987 777777765 3578999999999999999999887744 346899999999998876543311
Q ss_pred hhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 007673 301 AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380 (593)
Q Consensus 301 ~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 380 (593)
..-..|||+||+.++|+|.|+++|+.||.|++|+.++| ||||.|.++++|.+|++.+||+.|+|.
T Consensus 257 --------s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~ 321 (506)
T KOG0117|consen 257 --------SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGS 321 (506)
T ss_pred --------hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCc
Confidence 12236999999999999999999999999999999877 999999999999999999999999999
Q ss_pred eeEEEeccchHHHHHH
Q 007673 381 PLYVAVAQRKEERRAR 396 (593)
Q Consensus 381 ~l~v~~~~~~~~r~~~ 396 (593)
.|.|.+|++...++..
T Consensus 322 ~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 322 PIEVTLAKPVDKKKKE 337 (506)
T ss_pred eEEEEecCChhhhccc
Confidence 9999999987766544
No 7
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-40 Score=300.53 Aligned_cols=329 Identities=30% Similarity=0.478 Sum_probs=244.6
Q ss_pred hcccCCCCCCCCCCCC-CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHH
Q 007673 9 QAQMSGPNGVAAGASG-NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARA 87 (593)
Q Consensus 9 ~~~~~~~~~~~~~~~~-~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~A 87 (593)
+...+...+..++++. .....+.|.|.-||...|+++|+.+|..+|.|.+++++||+.++.|+||+||+|.+++||++|
T Consensus 20 ~~~~p~t~~~~~~~~~~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~A 99 (360)
T KOG0145|consen 20 QTNGPSTNRNNCSSGNDTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKA 99 (360)
T ss_pred ccCCCcccCCcCCCCCCcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHH
Confidence 3344455555555554 345567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccCCcEEEEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEc
Q 007673 88 LDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFE 166 (593)
Q Consensus 88 l~~ln~~~i~g~~i~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~ 166 (593)
+..||+-.+..+.|+|.|+....+ .....+|||.+||+++|.++|..+|+.||.|...+|..| .+|.++|.|||.|.
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~--~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFD 177 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSD--SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFD 177 (360)
T ss_pred HhhhcceeeccceEEEEeccCChh--hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEec
Confidence 999999999999999999865433 345679999999999999999999999999888888887 68999999999999
Q ss_pred CHHHHHHHHHHhCCceecCe--eEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhc----cCC-CeeEEE
Q 007673 167 NKESAQNAIDKLNGMLINDK--QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFG----EYG-TITSAV 239 (593)
Q Consensus 167 ~~e~A~~Al~~l~g~~~~g~--~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~----~~G-~v~~v~ 239 (593)
..++|++||+.|||..-.|. .|.|.++...+ ...+..-|..+|. .|| .+....
T Consensus 178 Kr~EAe~AIk~lNG~~P~g~tepItVKFannPs--------------------q~t~~a~ls~ly~sp~rr~~Gp~hh~~ 237 (360)
T KOG0145|consen 178 KRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS--------------------QKTNQALLSQLYQSPARRYGGPMHHQA 237 (360)
T ss_pred chhHHHHHHHhccCCCCCCCCCCeEEEecCCcc--------------------cccchhhhHHhhcCccccCCCcccchh
Confidence 99999999999999765442 34444332221 1112222233331 111 111000
Q ss_pred EeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccC
Q 007673 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNL 319 (593)
Q Consensus 240 i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl 319 (593)
.+ |-+-.... -..++..+....+++-.-.+.... ......+.+|||-||
T Consensus 238 ------~r---~r~~~~~~---~~~~~~rfsP~~~d~m~~l~~~~l-------------------p~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 238 ------QR---FRLDNLLN---PHAAQARFSPMTIDGMSGLAGVNL-------------------PGGPGGGWCIFVYNL 286 (360)
T ss_pred ------hh---hccccccc---hhhhhccCCCccccccceeeeecc-------------------CCCCCCeeEEEEEec
Confidence 00 00000001 111111111222222111111110 011224679999999
Q ss_pred CCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 320 GDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 320 ~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
..+.+|.-|-++|.+||.|..|+|++|- +++++|||||.+.+-++|..||..|||..+++|.|.|+|...|
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999999999999999999999996 4889999999999999999999999999999999999998754
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.4e-39 Score=344.68 Aligned_cols=301 Identities=21% Similarity=0.329 Sum_probs=245.0
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccC-CcEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN-NKSI 101 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~-g~~i 101 (593)
...+...++|||+|||++++|++|+++|++||.|.+|+|++| .+++|+|||||+|.+.++|++||+.||+..|. |+.|
T Consensus 52 ~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l 130 (578)
T TIGR01648 52 GVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLL 130 (578)
T ss_pred CCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccc
Confidence 334556799999999999999999999999999999999999 78999999999999999999999999998885 7888
Q ss_pred EEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccc-eEEEEEeeC--CCCCceeEEEEEEcCHHHHHHHHHHh
Q 007673 102 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN-ILSCKIATD--GSGQSKGFGFVQFENKESAQNAIDKL 178 (593)
Q Consensus 102 ~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~-i~~~~i~~~--~~g~s~g~afV~F~~~e~A~~Al~~l 178 (593)
.|.++.. .++|||+|||.++++++|.+.|+.++. +.++.+... ..++++|||||+|.+.++|..|++.+
T Consensus 131 ~V~~S~~--------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL 202 (578)
T TIGR01648 131 GVCISVD--------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKL 202 (578)
T ss_pred ccccccc--------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHh
Confidence 8876642 568999999999999999999999874 445444432 35678999999999999999999988
Q ss_pred CC--ceecCeeEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccC--CCeeEEEEeeCCCCCcceeEEE
Q 007673 179 NG--MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEY--GTITSAVVMRDGDGKSKCFGFV 254 (593)
Q Consensus 179 ~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~--G~v~~v~i~~~~~g~~~g~afV 254 (593)
+. ..+.|+.|.|.+..+...... ......++|||+||+.++++++|+++|+.| |.|+.|.+++ +||||
T Consensus 203 ~~gki~l~Gr~I~VdwA~p~~~~d~-~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFV 274 (578)
T TIGR01648 203 MPGRIQLWGHVIAVDWAEPEEEVDE-DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFV 274 (578)
T ss_pred hccceEecCceEEEEeecccccccc-cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEE
Confidence 64 467899999998876544322 112345679999999999999999999999 9999998764 59999
Q ss_pred EeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHH-h---------hhHHhhhhhhhcccccceeeeccCCCCCC
Q 007673 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQEL-K---------GQFEQAMKETVDKFQGLNLYIKNLGDSID 324 (593)
Q Consensus 255 ~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~l~V~nl~~~~~ 324 (593)
+|++.++|.+|++.+++..|.|+.|.|.++.+........ . .................++++.|+++..+
T Consensus 275 eF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~ 354 (578)
T TIGR01648 275 HFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPP 354 (578)
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCcccccccccccccccc
Confidence 9999999999999999999999999999997654321000 0 00000001111223467899999999999
Q ss_pred HHHHHHHhhcCCCeeE
Q 007673 325 DEKLKELFSEFGTITS 340 (593)
Q Consensus 325 ~~~l~~~F~~~G~i~~ 340 (593)
++-+.++|..+|.|..
T Consensus 355 ~~~~~~~f~~~g~~~~ 370 (578)
T TIGR01648 355 YAPSLHFPRMPGPIRG 370 (578)
T ss_pred ccchhhccccCccccC
Confidence 9999999999998653
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=8.2e-38 Score=331.31 Aligned_cols=281 Identities=24% Similarity=0.349 Sum_probs=229.0
Q ss_pred CHHHHHHHHHhcCCcccCCcEEEEeeccCCCC---CCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCC
Q 007673 80 NPADAARALDVLNFTPLNNKSIRIMYSHRDPS---IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ 156 (593)
Q Consensus 80 s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~~~---~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~ 156 (593)
..++|.+||.++++..+........+...-+. ......++|||+|||.++++++|+++|+.||.|.+|+|+.|.+|.
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~ 97 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQ 97 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCC
Confidence 46888999998887766544443333322111 112345789999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcCHHHHHHHHHHhCCceec-CeeEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCC-
Q 007673 157 SKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGT- 234 (593)
Q Consensus 157 s~g~afV~F~~~e~A~~Al~~l~g~~~~-g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~- 234 (593)
++|||||+|.+.++|.+||+.||+..+. ++.+.|... ...++|||+|||.++++++|.+.|++++.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S------------~~~~rLFVgNLP~~~TeeeL~eeFskv~eg 165 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS------------VDNCRLFVGGIPKNKKREEILEEFSKVTEG 165 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc------------ccCceeEeecCCcchhhHHHHHHhhcccCC
Confidence 9999999999999999999999998885 666655432 23578999999999999999999999964
Q ss_pred eeEEEEeeC--CCCCcceeEEEEeCCHHHHHHHHHHHCC--CccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccc
Q 007673 235 ITSAVVMRD--GDGKSKCFGFVNFENADDAAKAVEALNG--KKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQ 310 (593)
Q Consensus 235 v~~v~i~~~--~~g~~~g~afV~F~~~e~A~~Ai~~l~g--~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (593)
+.++.+... ..++++|||||+|.++++|..|++.++. ..+.++.|.|.|+.++.+...+ ....
T Consensus 166 vv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~-------------~~~~ 232 (578)
T TIGR01648 166 VVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDED-------------VMAK 232 (578)
T ss_pred ceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEeeccccccccc-------------cccc
Confidence 444444322 3467899999999999999999988864 3578999999998765432111 1123
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcC--CCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..+|||+||++++++++|+++|+.| |.|++|++++ +||||+|.+.++|.+|++.|||..|+|+.|.|.|++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4589999999999999999999999 9999998764 499999999999999999999999999999999998
Q ss_pred chHH
Q 007673 389 RKEE 392 (593)
Q Consensus 389 ~~~~ 392 (593)
++..
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7543
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.6e-38 Score=305.31 Aligned_cols=255 Identities=25% Similarity=0.414 Sum_probs=230.9
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc-CCc
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL-NNK 99 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i-~g~ 99 (593)
-++...+..+.||||.||.++.|++|..+|+++|+|.++|++.|+.++.++|||||.|.+.++|++|+++||+.+| .|+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 4566668899999999999999999999999999999999999999999999999999999999999999999998 599
Q ss_pred EEEEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhcccc-ceEEEEEeeC--CCCCceeEEEEEEcCHHHHHHHHH
Q 007673 100 SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATD--GSGQSKGFGFVQFENKESAQNAID 176 (593)
Q Consensus 100 ~i~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G-~i~~~~i~~~--~~g~s~g~afV~F~~~e~A~~Al~ 176 (593)
.|.|+.+.+ .++|||+|||++.++++|.+.++..+ .|+.+.+..+ ...+++|||||+|.+...|.-|..
T Consensus 155 ~igvc~Sva--------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRr 226 (506)
T KOG0117|consen 155 LLGVCVSVA--------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARR 226 (506)
T ss_pred EeEEEEeee--------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHh
Confidence 999998865 47899999999999999999999988 4778888776 466799999999999999999998
Q ss_pred HhCC--ceecCeeEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEE
Q 007673 177 KLNG--MLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFV 254 (593)
Q Consensus 177 ~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV 254 (593)
+|-. ..+.|..+.|.|+.+..+.... ....-..|||+||+.++|++.|+++|+.||.|+.|+.++| ||||
T Consensus 227 Kl~~g~~klwgn~~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFV 298 (506)
T KOG0117|consen 227 KLMPGKIKLWGNAITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFV 298 (506)
T ss_pred hccCCceeecCCcceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEE
Confidence 8743 5788999999999988776544 3445567999999999999999999999999999998866 9999
Q ss_pred EeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHH
Q 007673 255 NFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE 291 (593)
Q Consensus 255 ~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~ 291 (593)
.|.+.++|.+|++.++++.++|..|.|..|.+..+..
T Consensus 299 Hf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 299 HFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred eecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999999999999999998766543
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.9e-36 Score=301.62 Aligned_cols=343 Identities=27% Similarity=0.430 Sum_probs=277.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
.||||++||++++.++|.++|+.+|+|..+.+..++.++.++||+||.|.=.+|+++|++..++..|.|+.|+|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999877643
Q ss_pred CCCC------------------------CCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEE
Q 007673 110 PSIR------------------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 165 (593)
Q Consensus 110 ~~~~------------------------~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F 165 (593)
.... .-....|.|+|||..+...+|..+|+.||.|+.+.|.....|.-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 2111 1124579999999999999999999999999999999888888889999999
Q ss_pred cCHHHHHHHHHHhCCceecCeeEEeccccchhhhHHHH------------------------------------------
Q 007673 166 ENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA------------------------------------------ 203 (593)
Q Consensus 166 ~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~------------------------------------------ 203 (593)
....+|..|++.+|+..|.||.|.|.|+.++..-....
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 99999999999999999999999999987543211100
Q ss_pred h--------------------hc----------------------cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEe
Q 007673 204 I--------------------KT----------------------KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM 241 (593)
Q Consensus 204 ~--------------------~~----------------------~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~ 241 (593)
. .. ...+|||.|||+++++++|.+.|++||.|..+.+.
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0 00 00259999999999999999999999999999988
Q ss_pred eCC-CCCcceeEEEEeCCHHHHHHHHHHH-----CC-CccCCceEEEeccccchHHHHHHhh------------------
Q 007673 242 RDG-DGKSKCFGFVNFENADDAAKAVEAL-----NG-KKFDDREWYVGKAQKKSEREQELKG------------------ 296 (593)
Q Consensus 242 ~~~-~g~~~g~afV~F~~~e~A~~Ai~~l-----~g-~~~~~~~l~v~~a~~~~~~~~~~~~------------------ 296 (593)
.+. ++.++|.|||.|.+..+|..||+.. .| ..+.|+.|.|..+..+.+..+....
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG 405 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREG 405 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccC
Confidence 884 6899999999999999999999866 22 5578999999998766543322110
Q ss_pred ---------------------hHHhhh----hhhhcccccceeeeccCCCCCCHHHHHHHhhc----C-CCee-EEEEee
Q 007673 297 ---------------------QFEQAM----KETVDKFQGLNLYIKNLGDSIDDEKLKELFSE----F-GTIT-SCKVMR 345 (593)
Q Consensus 297 ---------------------~~~~~~----~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~----~-G~i~-~v~i~~ 345 (593)
.+.... .+..-....+.|.|.|||..+++..|..+... | +.+. .|+.+.
T Consensus 406 ~I~~gt~aAeglS~~Dm~kRer~~~~k~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~ 485 (678)
T KOG0127|consen 406 LIRDGTPAAEGLSATDMAKRERIAERKRKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIK 485 (678)
T ss_pred ccccCChhhcccchhhHHHHHHHHHHHHHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhh
Confidence 000000 01111123456889999999999999988753 3 2222 245444
Q ss_pred CC----CCCCccEEEEEeCCHHHHHHHHHHh
Q 007673 346 DP----SGISKGSGFVAFSTPEEASRALAEM 372 (593)
Q Consensus 346 ~~----~g~~~g~afV~f~~~~~A~~A~~~~ 372 (593)
+. .+.+.||+|+.|...+.|.+|+..+
T Consensus 486 ~le~~~k~~s~g~aF~~f~EhEhalkalk~~ 516 (678)
T KOG0127|consen 486 FLEEEKKNYSEGYAFVGFTEHEHALKALKVL 516 (678)
T ss_pred hHHhhhhcccccccccCccHHHHHHHhhhcc
Confidence 42 4678999999999999999999865
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2e-35 Score=313.31 Aligned_cols=168 Identities=23% Similarity=0.496 Sum_probs=154.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..++|||||||++++|++|+++|+.||.|.+|++++|+.|++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCCCC---------CCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHH
Q 007673 108 RDPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177 (593)
Q Consensus 108 ~~~~~---------~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~ 177 (593)
..+.. ......+|||+||+.++++++|+++|+.||.|.+|++..+ .++.++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 33211 1123468999999999999999999999999999999998 4678999999999999999999999
Q ss_pred hCCceecCeeEEeccccc
Q 007673 178 LNGMLINDKQVFVGHFLR 195 (593)
Q Consensus 178 l~g~~~~g~~l~v~~~~~ 195 (593)
+|+..++|+.|+|.++..
T Consensus 266 mNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred hCCCeeCCeEEEEEecCC
Confidence 999999999999988764
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=293.24 Aligned_cols=363 Identities=25% Similarity=0.365 Sum_probs=242.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcc-cCC--cEEEE
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP-LNN--KSIRI 103 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~-i~g--~~i~v 103 (593)
...-.||||.+|..++|.||+++|++||.|.+|.|.+|+.|+.++|||||.|.+.++|.+|+..|++.. |-| .+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456789999999999999999999999999999999999999999999999999999999999998765 434 68888
Q ss_pred eeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCc-e
Q 007673 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM-L 182 (593)
Q Consensus 104 ~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~-~ 182 (593)
.+++.... +-.....|||+-|++.+++.+++++|++||.|++|.|.+|..+.+||||||.|.+.|.|..||+.|||. .
T Consensus 112 k~Ad~E~e-r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~t 190 (510)
T KOG0144|consen 112 KYADGERE-RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQT 190 (510)
T ss_pred cccchhhh-ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcccee
Confidence 88765422 224577899999999999999999999999999999999999999999999999999999999999985 4
Q ss_pred ecC--eeEEeccccchhhhHHHHhh--c-----------cccc------------------------eeccCCCC--CCC
Q 007673 183 IND--KQVFVGHFLRKQERETVAIK--T-----------KFNN------------------------VFVKNLDE--STT 221 (593)
Q Consensus 183 ~~g--~~l~v~~~~~~~~~~~~~~~--~-----------~~~~------------------------l~V~nlp~--~~t 221 (593)
+.| ..+.|.++..+..+..+... . ++.+ .-+++++. ...
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 444 57888888776655433320 0 0110 00111110 011
Q ss_pred HHHHHHhh--ccCCC-----eeEEE--EeeCCC---C--Cc--ceeEEEEe----CCHHHHHHHHHHHCCCcc-------
Q 007673 222 DEDLKKIF--GEYGT-----ITSAV--VMRDGD---G--KS--KCFGFVNF----ENADDAAKAVEALNGKKF------- 274 (593)
Q Consensus 222 e~~l~~~F--~~~G~-----v~~v~--i~~~~~---g--~~--~g~afV~F----~~~e~A~~Ai~~l~g~~~------- 274 (593)
...+.+.- ..... ..+.. ..+... + .+ ..+++-.- .+.-.-.-+...+-+...
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence 10010000 00000 00000 000000 0 00 00000000 000000000111100000
Q ss_pred -CCce------------------------------------EEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeec
Q 007673 275 -DDRE------------------------------------WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 317 (593)
Q Consensus 275 -~~~~------------------------------------l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 317 (593)
.+-. ++...+.+....................+...+.+|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 0000 000000000000000001111112233456678899999
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 318 NLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 318 nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
+||-+.-+.+|-..|..||.|.+.++..|+ +|.++.|+||.|++..+|..||..|||+.|++|+|+|.+.+.+
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDR 504 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeecc
Confidence 999999999999999999999999998774 8899999999999999999999999999999999999988764
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.1e-35 Score=314.41 Aligned_cols=341 Identities=22% Similarity=0.293 Sum_probs=232.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+||+ |++..+.|++|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999999999999999999999999999998 899999999999988
Q ss_pred ccCCCCC----------CCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC-CCCceeEEEEEEcCHHHHHHH
Q 007673 106 SHRDPSI----------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174 (593)
Q Consensus 106 s~~~~~~----------~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~g~s~g~afV~F~~~e~A~~A 174 (593)
+...... ......+|||+|||.++++++|.++|+.||.|..|.+..+. +|.++|||||+|.+.++|..|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6532111 11235789999999999999999999999999999999984 668999999999999999999
Q ss_pred HHHhCCceecCeeEEeccccchhhhHHHHhh-ccccc-eeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeE
Q 007673 175 IDKLNGMLINDKQVFVGHFLRKQERETVAIK-TKFNN-VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252 (593)
Q Consensus 175 l~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~-~~~~~-l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~a 252 (593)
++.|+|..+.|+.|.|.++............ ..... -..+..........+...+...+......+. ...+ ....
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~ 321 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIP-GTGS--KIAL 321 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCC-Cccc--hhhh
Confidence 9999999999999999987643322111000 00000 0000001111222333333222211000000 0000 0000
Q ss_pred EEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHH-hhhhhhhcccccceeeeccCCCCCC-------
Q 007673 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFE-QAMKETVDKFQGLNLYIKNLGDSID------- 324 (593)
Q Consensus 253 fV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nl~~~~~------- 324 (593)
+..+. ........+....+... ...... .............+|+|.||-...+
T Consensus 322 ~~~~~-------------~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~ 382 (457)
T TIGR01622 322 MQKLQ-------------RDGIIDPNIPSRYATGA------LAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFD 382 (457)
T ss_pred hcccc-------------ccccccccccccccccc------cccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHH
Confidence 00000 00000000000000000 000000 0000000123567899999955544
Q ss_pred ---HHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchHH
Q 007673 325 ---DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEE 392 (593)
Q Consensus 325 ---~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~ 392 (593)
.+||++.|++||.|++|.|... .+.|++||.|.+.++|.+|++.|||+.|+|+.|.|.+.....-
T Consensus 383 ~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~~ 450 (457)
T TIGR01622 383 NEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDVY 450 (457)
T ss_pred HHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHHH
Confidence 3689999999999999988643 3578999999999999999999999999999999999976543
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-35 Score=272.15 Aligned_cols=234 Identities=25% Similarity=0.461 Sum_probs=194.7
Q ss_pred CCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccc
Q 007673 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195 (593)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~ 195 (593)
..++|||+||+.++|++-|..+|+..|.|.+|+++.++- .|.+...
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~----------------------------------~v~wa~~ 50 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL----------------------------------KVNWATA 50 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh----------------------------------ccccccC
Confidence 456899999999999999999999999999999998621 1111111
Q ss_pred hhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCcc
Q 007673 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKF 274 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~-~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~ 274 (593)
....+. ......-.+||+.|...++.++|++.|.+||+|.++++++| .+++++||+||.|.+.++|++||..|+|..+
T Consensus 51 p~nQsk-~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 51 PGNQSK-PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred cccCCC-CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 111100 00111234999999999999999999999999999999999 5799999999999999999999999999999
Q ss_pred CCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccE
Q 007673 275 DDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS 354 (593)
Q Consensus 275 ~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~ 354 (593)
++|.|+-.|+..|......-...++...+ .....+|+|||+||+.-++|++||+.|++||.|.+|+|+++ +||
T Consensus 130 G~R~IRTNWATRKp~e~n~~~ltfdeV~N--Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 130 GRRTIRTNWATRKPSEMNGKPLTFDEVYN--QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred ccceeeccccccCccccCCCCccHHHHhc--cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 99999999999887332222222333322 23457899999999999999999999999999999999998 789
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchH
Q 007673 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391 (593)
Q Consensus 355 afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~ 391 (593)
+||.|.+.|.|.+||..+||..|+|..+++.|.+...
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999999999999999999999999999998654
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=7.4e-35 Score=312.20 Aligned_cols=262 Identities=22% Similarity=0.337 Sum_probs=209.4
Q ss_pred CccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHh--CCceecCeeEEecccc
Q 007673 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL--NGMLINDKQVFVGHFL 194 (593)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l--~g~~~~g~~l~v~~~~ 194 (593)
+..|||+|||.++++++|+++|+.||.|.+|++++ +++||||+|.+.++|..|++.+ ++..+.|+.|.|.++.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 45799999999999999999999999999999986 4689999999999999999864 7789999999999876
Q ss_pred chhhhHHH------HhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHH
Q 007673 195 RKQERETV------AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEA 268 (593)
Q Consensus 195 ~~~~~~~~------~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~ 268 (593)
.+...... .......+|+|+||++.+++++|+++|+.||.|.+|.++++.. +++|||+|.+.++|.+|++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 77 SQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred CcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHHH
Confidence 54311111 0112335799999999999999999999999999999987642 46899999999999999999
Q ss_pred HCCCccCC--ceEEEeccccchH--------------------HHHHHhh----hHHh----------------h-----
Q 007673 269 LNGKKFDD--REWYVGKAQKKSE--------------------REQELKG----QFEQ----------------A----- 301 (593)
Q Consensus 269 l~g~~~~~--~~l~v~~a~~~~~--------------------~~~~~~~----~~~~----------------~----- 301 (593)
|||..+.+ ..|.|.++....- +...+.. .... .
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999964 3666666543110 0000000 0000 0
Q ss_pred ---------------hh-----------------hhhcccccceeeeccCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCC
Q 007673 302 ---------------MK-----------------ETVDKFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPS 348 (593)
Q Consensus 302 ---------------~~-----------------~~~~~~~~~~l~V~nl~~-~~~~~~l~~~F~~~G~i~~v~i~~~~~ 348 (593)
.. ......++++|||+||++ .+|+++|+++|+.||.|.+|+|+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-- 311 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-- 311 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--
Confidence 00 000123567999999997 6999999999999999999999987
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 349 GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 349 g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
.+|||||+|.+.++|.+|+..|||..|.|++|+|.+++.+
T Consensus 312 --~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 --KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred --CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 3689999999999999999999999999999999988654
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.6e-33 Score=304.34 Aligned_cols=255 Identities=23% Similarity=0.370 Sum_probs=206.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhcc------------CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQV------------GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN 92 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~------------G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln 92 (593)
.....++|||||||+++|+++|+++|+.+ +.|..+.+. +++|||||+|.+.++|..||+ |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~------~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN------KEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC------CCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34567999999999999999999999975 345555553 456899999999999999996 99
Q ss_pred CcccCCcEEEEeeccCCC---------------------------CCCCCCCccEEEeCCCcccCHHHHHhhhccccceE
Q 007673 93 FTPLNNKSIRIMYSHRDP---------------------------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL 145 (593)
Q Consensus 93 ~~~i~g~~i~v~~s~~~~---------------------------~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~ 145 (593)
+..|.|++|+|.+..... ........+|||+|||..+++++|.++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 999999999997543221 00112346899999999999999999999999999
Q ss_pred EEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchhhhHH----------------HH-----
Q 007673 146 SCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERET----------------VA----- 203 (593)
Q Consensus 146 ~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~----------------~~----- 203 (593)
.+.++.+ .+|.++|||||+|.+.++|..|++.|+|..+.|+.|.|.++........ ..
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQ 403 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhcc
Confidence 9999998 5889999999999999999999999999999999999987643211100 00
Q ss_pred -hhccccceeccCCCCCC----------CHHHHHHhhccCCCeeEEEEeeCC----CCCcceeEEEEeCCHHHHHHHHHH
Q 007673 204 -IKTKFNNVFVKNLDEST----------TDEDLKKIFGEYGTITSAVVMRDG----DGKSKCFGFVNFENADDAAKAVEA 268 (593)
Q Consensus 204 -~~~~~~~l~V~nlp~~~----------te~~l~~~F~~~G~v~~v~i~~~~----~g~~~g~afV~F~~~e~A~~Ai~~ 268 (593)
.......|+|.|+.... ..++|+++|++||.|.+|.|.++. .+...|++||+|.+.++|..|+..
T Consensus 404 ~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~ 483 (509)
T TIGR01642 404 IGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEG 483 (509)
T ss_pred ccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHH
Confidence 01134567888885321 126799999999999999998762 245678999999999999999999
Q ss_pred HCCCccCCceEEEecccc
Q 007673 269 LNGKKFDDREWYVGKAQK 286 (593)
Q Consensus 269 l~g~~~~~~~l~v~~a~~ 286 (593)
|||..|.|+.|.+.+...
T Consensus 484 lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 484 MNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCCCEECCeEEEEEEeCH
Confidence 999999999999988654
No 18
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.3e-34 Score=260.53 Aligned_cols=220 Identities=28% Similarity=0.508 Sum_probs=192.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
+..-+|||||||..++||+-|..||+++|+|++++|+.| .++|+|
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 345689999999999999999999999999999999876 455666
Q ss_pred ccCCCCCCCCC---CccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCc
Q 007673 106 SHRDPSIRKSG---TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGM 181 (593)
Q Consensus 106 s~~~~~~~~~~---~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~ 181 (593)
........+.. .-.+||+.|...++.++|++.|..||+|.+++|++| .+++++|||||.|.+.++|+.||..|||.
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq 127 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQ 127 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCe
Confidence 54432222211 235899999999999999999999999999999999 79999999999999999999999999999
Q ss_pred eecCeeEEeccccchhhhHHHH----------hhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCccee
Q 007673 182 LINDKQVFVGHFLRKQERETVA----------IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCF 251 (593)
Q Consensus 182 ~~~g~~l~v~~~~~~~~~~~~~----------~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~ 251 (593)
-|++|.|+..|+.++..+.... ....+++||++|++..++|+++++.|+.||.|.+|++.++ +||
T Consensus 128 WlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGY 202 (321)
T KOG0148|consen 128 WLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGY 202 (321)
T ss_pred eeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cce
Confidence 9999999999999876432111 1345688999999999999999999999999999999988 789
Q ss_pred EEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 252 GFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 252 afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
+||.|++.|+|.+||..+|+..+.|..+++.|..
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~G~~VkCsWGK 236 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGK 236 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeCceEEEEeccc
Confidence 9999999999999999999999999999998874
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=274.93 Aligned_cols=276 Identities=31% Similarity=0.477 Sum_probs=229.0
Q ss_pred ccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccch
Q 007673 118 GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (593)
Q Consensus 118 ~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~ 196 (593)
.+|||++||.+++.++|.++|+.+|.|..|.++.+ ..+.++|||||.|.-.+++.+|++..++..++|+.+.|..+..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 68999999999999999999999999999999999 56689999999999999999999999999999999999887755
Q ss_pred hhhHHHHh--------------------hccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEe
Q 007673 197 QERETVAI--------------------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNF 256 (593)
Q Consensus 197 ~~~~~~~~--------------------~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F 256 (593)
...+.... ....-.|.|.|||+.+.+++|..+|+.||.|..|+|.+..+|+..|||||.|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 43321100 0113459999999999999999999999999999999998888889999999
Q ss_pred CCHHHHHHHHHHHCCCccCCceEEEeccccchHHHH-------HHh----------------------------------
Q 007673 257 ENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ-------ELK---------------------------------- 295 (593)
Q Consensus 257 ~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~-------~~~---------------------------------- 295 (593)
.+..+|..|++.+|+..|.|+++-|.||..+..-+. .++
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999965531111 000
Q ss_pred -hhHHhhh--------------------hh----------hhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEe
Q 007673 296 -GQFEQAM--------------------KE----------TVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVM 344 (593)
Q Consensus 296 -~~~~~~~--------------------~~----------~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~ 344 (593)
..++... .+ ..+...+.+|||+|||+++|+++|.++|+.||.|..+.|+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 0000000 00 0011124679999999999999999999999999999988
Q ss_pred eCC-CCCCccEEEEEeCCHHHHHHHHHHh-----CC-ceecCeeeEEEeccchHHH
Q 007673 345 RDP-SGISKGSGFVAFSTPEEASRALAEM-----NG-KMIVSKPLYVAVAQRKEER 393 (593)
Q Consensus 345 ~~~-~g~~~g~afV~f~~~~~A~~A~~~~-----~~-~~~~~~~l~v~~~~~~~~r 393 (593)
.+. +|.++|+|||.|.+..+|.+||... .| ..+.||.|.|.++-.+..-
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA 381 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKEA 381 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHHH
Confidence 774 7899999999999999999999976 34 7889999999999876543
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=6.1e-32 Score=294.66 Aligned_cols=269 Identities=18% Similarity=0.288 Sum_probs=208.1
Q ss_pred CCccEEEeCCCcccCHHHHHhhhccc------------cceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCcee
Q 007673 116 GTGNIFIKNLDKSIDHKALHDTFSSF------------GNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183 (593)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~f~~~------------G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~ 183 (593)
...+|||+|||..+|+++|.++|..+ +.|..+.+ +..+|||||+|.+.++|..|| .|+|..+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 45689999999999999999999875 23444433 346899999999999999999 5999999
Q ss_pred cCeeEEeccccchhhhH----------------H-------HHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEE
Q 007673 184 NDKQVFVGHFLRKQERE----------------T-------VAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVV 240 (593)
Q Consensus 184 ~g~~l~v~~~~~~~~~~----------------~-------~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i 240 (593)
.|+.|.|.......... . .......++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 99999997543322000 0 000123468999999999999999999999999999999
Q ss_pred eeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHh--------hhHHhhh--hhhhccc
Q 007673 241 MRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELK--------GQFEQAM--KETVDKF 309 (593)
Q Consensus 241 ~~~-~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~--------~~~~~~~--~~~~~~~ 309 (593)
+.+ .+|.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++........... ....... .......
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGK 407 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCC
Confidence 888 4688999999999999999999999999999999999999854321100000 0000000 0001123
Q ss_pred ccceeeeccCCCC--C--------CHHHHHHHhhcCCCeeEEEEeeCC----CCCCccEEEEEeCCHHHHHHHHHHhCCc
Q 007673 310 QGLNLYIKNLGDS--I--------DDEKLKELFSEFGTITSCKVMRDP----SGISKGSGFVAFSTPEEASRALAEMNGK 375 (593)
Q Consensus 310 ~~~~l~V~nl~~~--~--------~~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~A~~~~~~~ 375 (593)
...+|+|.|+... + ..++|+++|+.||.|.+|+|+++. .+.+.|+|||+|.+.++|.+|+..|||+
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 4567999999532 1 136899999999999999998752 3456899999999999999999999999
Q ss_pred eecCeeeEEEeccch
Q 007673 376 MIVSKPLYVAVAQRK 390 (593)
Q Consensus 376 ~~~~~~l~v~~~~~~ 390 (593)
.|+|+.|.|.|....
T Consensus 488 ~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 488 KFNDRVVVAAFYGED 502 (509)
T ss_pred EECCeEEEEEEeCHH
Confidence 999999999998754
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-32 Score=273.73 Aligned_cols=346 Identities=34% Similarity=0.485 Sum_probs=278.3
Q ss_pred cEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchhh
Q 007673 119 NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 198 (593)
Q Consensus 119 ~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 198 (593)
.|+|+ +++|+..|+++|+.+|.|+++++..|. + +-|||||.|.++++|.+|++.+|...+.|+.+++.|..+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~ 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc
Confidence 57888 899999999999999999999999998 6 999999999999999999999999999999999998765433
Q ss_pred hHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCce
Q 007673 199 RETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 278 (593)
Q Consensus 199 ~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~ 278 (593)
. +||+||++.++...|.++|+.||.|.+|.+..+.+| ++|| ||+|++.+.|.+|++.+||..+.++.
T Consensus 78 ~-----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 78 L-----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred e-----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 2 999999999999999999999999999999999988 8999 99999999999999999999999999
Q ss_pred EEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEE
Q 007673 279 WYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358 (593)
Q Consensus 279 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~ 358 (593)
++|.....+.++...... ....-+++||+|++.+++++.|.++|+.||.|.++.++.+..|.+++|+||.
T Consensus 145 i~vg~~~~~~er~~~~~~----------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~ 214 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGE----------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVN 214 (369)
T ss_pred eEEeeccchhhhcccccc----------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcccee
Confidence 999999988877644332 1223457999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceecCeeeEEEeccchHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007673 359 FSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQMRPVAMGPSVPPRMPMYPPGPSGLGQQFLYGQAPP 438 (593)
Q Consensus 359 f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~pp 438 (593)
|.+.++|..|+..||+..+.++.+.|.-++.+.++.......+.+......... . ...-
T Consensus 215 f~~~e~a~~av~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~--------~-------~~nl------ 273 (369)
T KOG0123|consen 215 FENPEDAKKAVETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSL--------Q-------GANL------ 273 (369)
T ss_pred ecChhHHHHHHHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccc--------c-------cccc------
Confidence 999999999999999999999999999998876666554443322211100000 0 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccchhhhcCCCHHHHHHHhhhc
Q 007673 439 AIIPPQMPPRGHAYRYPLGRNMQDFPFDMGAGSMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGES 518 (593)
Q Consensus 439 ~~~pp~~~p~~~~~~~pp~~~~p~~~~p~~~~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~ 518 (593)
|. ..+...+.........+-+|+.
T Consensus 274 -------------~v-------------------------------------------knld~~~~~e~L~~~f~~~GeI 297 (369)
T KOG0123|consen 274 -------------YV-------------------------------------------KNLDETLSDEKLRKIFSSFGEI 297 (369)
T ss_pred -------------cc-------------------------------------------ccCccccchhHHHHHHhcccce
Confidence 00 0011223333445556667777
Q ss_pred chhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007673 519 LYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRS 569 (593)
Q Consensus 519 l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~~ 569 (593)
...+|...+...+.....+..+-+.+....|.+-...+.......+.+.+.
T Consensus 298 ~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr 348 (369)
T KOG0123|consen 298 TSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQR 348 (369)
T ss_pred eeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhh
Confidence 776666667777777777777777666666666666666666666666553
No 22
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=6.3e-31 Score=271.22 Aligned_cols=328 Identities=25% Similarity=0.400 Sum_probs=262.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
.+..|||+|||+..+|+||..+| |||.|..++.|.+|..++++..+.|+-+.|....
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~ 282 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSK 282 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcc
Confidence 56799999999999999999999 7999999999999999999999999998875432
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 007673 108 RDPSI--------------------------------------------------------------------------- 112 (593)
Q Consensus 108 ~~~~~--------------------------------------------------------------------------- 112 (593)
...+.
T Consensus 283 ~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~ 362 (725)
T KOG0110|consen 283 EKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQ 362 (725)
T ss_pred hhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhch
Confidence 10000
Q ss_pred ------------------CCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHH
Q 007673 113 ------------------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNA 174 (593)
Q Consensus 113 ------------------~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~A 174 (593)
......-|+++|||..+..++|.++|..||.|..+.+. +.|. -++|+|.+..+|..|
T Consensus 363 e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr~A 437 (725)
T KOG0110|consen 363 EVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEARKA 437 (725)
T ss_pred hhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchHHH
Confidence 00112348899999999999999999999999888443 3333 589999999999999
Q ss_pred HHHhCCceecCeeEEeccccchhhh-------------H----------HHH--------------------h-hccccc
Q 007673 175 IDKLNGMLINDKQVFVGHFLRKQER-------------E----------TVA--------------------I-KTKFNN 210 (593)
Q Consensus 175 l~~l~g~~~~g~~l~v~~~~~~~~~-------------~----------~~~--------------------~-~~~~~~ 210 (593)
...+....+....+++.+....... . ... . ....+.
T Consensus 438 frklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~ 517 (725)
T KOG0110|consen 438 FRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETK 517 (725)
T ss_pred HHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchh
Confidence 9999877766666655543211111 0 000 0 011123
Q ss_pred eeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCC----CcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecccc
Q 007673 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG----KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (593)
Q Consensus 211 l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g----~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~ 286 (593)
+||+||.++.+.+++...|...|.|.++.|....+. .|.|||||+|.+.++|..|++.|+|..+.|..|.+..+..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999999988876543 4669999999999999999999999999999999999872
Q ss_pred chHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHH
Q 007673 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEA 365 (593)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A 365 (593)
+...... ........+++|.|+|||+..+..+++++|..||.|.+|+|... ..+.++|||||.|-++++|
T Consensus 598 k~~~~~g---------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 598 KPASTVG---------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred ccccccc---------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 2221111 11112223779999999999999999999999999999999887 4566799999999999999
Q ss_pred HHHHHHhCCceecCeeeEEEeccchHH
Q 007673 366 SRALAEMNGKMIVSKPLYVAVAQRKEE 392 (593)
Q Consensus 366 ~~A~~~~~~~~~~~~~l~v~~~~~~~~ 392 (593)
.+|+..|.+..+.||+|+++|+.....
T Consensus 669 ~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 669 KNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999987654
No 23
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.97 E-value=5.3e-30 Score=259.53 Aligned_cols=170 Identities=30% Similarity=0.524 Sum_probs=154.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++||++|+++|+.||+|.+|+|++|..+++++|||||+|.+.++|++|++.||+..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCcee
Q 007673 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183 (593)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~ 183 (593)
|+.... ......+|||.|||.++|+++|+++|+.||.|..|+|..+ .+++++|||||+|.+.++|.+||+.||+..+
T Consensus 183 ~a~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 183 YARPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred cccccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 986532 2234568999999999999999999999999999999998 4899999999999999999999999999988
Q ss_pred cC--eeEEeccccch
Q 007673 184 ND--KQVFVGHFLRK 196 (593)
Q Consensus 184 ~g--~~l~v~~~~~~ 196 (593)
.+ +.|.|.++...
T Consensus 261 ~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 261 EGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCceeEEEEECCcc
Confidence 66 57777766543
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=9.4e-29 Score=250.45 Aligned_cols=168 Identities=31% Similarity=0.555 Sum_probs=152.2
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~-~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a 284 (593)
...++|||+|||+++++++|+++|+.||.|.+|.+++| .+++++|||||+|.+.++|.+|++.|++..+.++.|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 45688999999999999999999999999999999988 46899999999999999999999999999999999999987
Q ss_pred ccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHH
Q 007673 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (593)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~ 363 (593)
..... ....++|||+|||.++|+++|+++|++||.|++++|+++. +|+++|||||+|.+.+
T Consensus 185 ~p~~~------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 185 RPGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred ccccc------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 54321 1134689999999999999999999999999999999885 7899999999999999
Q ss_pred HHHHHHHHhCCceecC--eeeEEEeccchH
Q 007673 364 EASRALAEMNGKMIVS--KPLYVAVAQRKE 391 (593)
Q Consensus 364 ~A~~A~~~~~~~~~~~--~~l~v~~~~~~~ 391 (593)
+|.+|++.||+..+.+ ++|.|.|++.+.
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 9999999999998865 789999998653
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7.1e-28 Score=234.51 Aligned_cols=172 Identities=30% Similarity=0.576 Sum_probs=151.2
Q ss_pred ccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCcc-CC--ceEEEec
Q 007673 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKF-DD--REWYVGK 283 (593)
Q Consensus 208 ~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~-~~--~~l~v~~ 283 (593)
.-.+||+.+|+.|+|.||+++|++||.|.+|.+++|+ ++.++|||||.|.+.++|.+|+.+||.... .| ..+.|.+
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 3469999999999999999999999999999999996 588999999999999999999999998764 33 5677887
Q ss_pred cccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHH
Q 007673 284 AQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPE 363 (593)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~ 363 (593)
+....++. ....+|||+-|+..+||+|++++|++||.|++|.|++|.+|.|||||||+|.+.+
T Consensus 114 Ad~E~er~-----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke 176 (510)
T KOG0144|consen 114 ADGERERI-----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKE 176 (510)
T ss_pred cchhhhcc-----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHH
Confidence 76655442 1234799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCce-ec--CeeeEEEeccchHHHHHH
Q 007673 364 EASRALAEMNGKM-IV--SKPLYVAVAQRKEERRAR 396 (593)
Q Consensus 364 ~A~~A~~~~~~~~-~~--~~~l~v~~~~~~~~r~~~ 396 (593)
.|..||+.|||.. +. ..+|.|.||+.++.|..+
T Consensus 177 ~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 177 MAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred HHHHHHHhhccceeeccCCCceEEEecccCCCchHH
Confidence 9999999999974 44 469999999987655443
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=9.2e-26 Score=239.84 Aligned_cols=177 Identities=24% Similarity=0.429 Sum_probs=151.7
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~-~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
..++|||+||++++++++|+++|+.||.|.+|.++.| .+++++|||||+|.+.++|..|++.++|..+.|+.|.|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4568999999999999999999999999999999988 468999999999999999999999999999999999998654
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 364 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 364 (593)
.......... .........++|||+||+.++++++|+++|+.||.|.+++|.++. .|+++|||||+|.+.++
T Consensus 186 ~~p~a~~~~~-------~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~ 258 (612)
T TIGR01645 186 NMPQAQPIID-------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 258 (612)
T ss_pred cccccccccc-------cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHH
Confidence 3211110000 000011234689999999999999999999999999999999985 57799999999999999
Q ss_pred HHHHHHHhCCceecCeeeEEEeccch
Q 007673 365 ASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 365 A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|.+|++.||+..++|+.|+|.++..+
T Consensus 259 A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 259 QSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999999988753
No 27
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=6e-26 Score=235.90 Aligned_cols=171 Identities=30% Similarity=0.462 Sum_probs=151.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC--cEEEEee
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN--KSIRIMY 105 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g--~~i~v~~ 105 (593)
..++|||+|||.++++++|+++|+.||.|..++++++..++.++|||||+|.+.++|++|++.||+..+.| ++|+|.|
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999877 5778877
Q ss_pred ccCCCCC------------------C------------------------------------------------------
Q 007673 106 SHRDPSI------------------R------------------------------------------------------ 113 (593)
Q Consensus 106 s~~~~~~------------------~------------------------------------------------------ 113 (593)
+...... .
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 6422100 0
Q ss_pred ------------------CCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC-CCCceeEEEEEEcCHHHHHHH
Q 007673 114 ------------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNA 174 (593)
Q Consensus 114 ------------------~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~g~s~g~afV~F~~~e~A~~A 174 (593)
.....+|||+|||.++++++|+++|+.||.|.+|+|+.|. +|.++|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0011259999999999999999999999999999999995 999999999999999999999
Q ss_pred HHHhCCceecCeeEEeccccchhh
Q 007673 175 IDKLNGMLINDKQVFVGHFLRKQE 198 (593)
Q Consensus 175 l~~l~g~~~~g~~l~v~~~~~~~~ 198 (593)
++.|||..+.|+.|.|.+...+..
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 999999999999999998776543
No 28
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=2.6e-25 Score=216.46 Aligned_cols=237 Identities=19% Similarity=0.257 Sum_probs=199.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQ-VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~-~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
.+.-.+++||.|+|+++.=.+|+++|.. .|.|..|.+..|. .++++|+|.|+|+++|.++||++.||...++||+|.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 3445788999999999999999999986 6899999999996 4799999999999999999999999999999999999
Q ss_pred eeccCCC----CCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhC
Q 007673 104 MYSHRDP----SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN 179 (593)
Q Consensus 104 ~~s~~~~----~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~ 179 (593)
.-.++.. ..........|+.++....-+..|...|+.-|.+..-.+..|.++.+++..++.|++.-.+..++.-++
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 7554321 112234567999999999999999999999998888888899999999999999999888888886555
Q ss_pred CceecCeeEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCH
Q 007673 180 GMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENA 259 (593)
Q Consensus 180 g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~ 259 (593)
......+.+.+ + .......+||.||.+.+....|++.|.--|.|+++.+..|+.|.++||+.++|..+
T Consensus 199 l~~~Flr~~h~--f----------~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 199 LSASFLRSLHI--F----------SPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHP 266 (608)
T ss_pred chhhhhhhccC--C----------CCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecch
Confidence 44333333332 0 11234569999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCcc
Q 007673 260 DDAAKAVEALNGKKF 274 (593)
Q Consensus 260 e~A~~Ai~~l~g~~~ 274 (593)
-.|-.|+..+++.-+
T Consensus 267 veavqaIsml~~~g~ 281 (608)
T KOG4212|consen 267 VEAVQAISMLDRQGL 281 (608)
T ss_pred HHHHHHHHhhccCCC
Confidence 999999988875443
No 29
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.93 E-value=7.8e-26 Score=196.39 Aligned_cols=173 Identities=34% Similarity=0.612 Sum_probs=154.3
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
+.....|||||||+..++++.|+++|-+.|+|.+|++.+|+.+....|||||+|.+.|||+-|++-||...+-|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEE-EEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCce
Q 007673 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS-CKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (593)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~-~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~ 182 (593)
.+.... ..-....++||+||.+.++++.|+++|+.||.+.+ -++..+ .+|.++|+|||.|.+.+.+.+|+..+||..
T Consensus 85 kas~~~-~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 85 KASAHQ-KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred eccccc-ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 876332 22233479999999999999999999999998765 356666 568999999999999999999999999999
Q ss_pred ecCeeEEeccccchhh
Q 007673 183 INDKQVFVGHFLRKQE 198 (593)
Q Consensus 183 ~~g~~l~v~~~~~~~~ 198 (593)
++++.+.|..+..+..
T Consensus 164 l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDT 179 (203)
T ss_pred hcCCceEEEEEEecCC
Confidence 9999999988765543
No 30
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.93 E-value=1.1e-26 Score=169.13 Aligned_cols=64 Identities=61% Similarity=0.944 Sum_probs=62.0
Q ss_pred CHHHHHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007673 507 SPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 570 (593)
Q Consensus 507 ~~~~~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~~~ 570 (593)
+|++||++|||+|||+|++++|++|+||||||||||++||++||+|+++|++||+||++||+++
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999999999999999999999999999999864
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.93 E-value=1.3e-25 Score=226.27 Aligned_cols=327 Identities=21% Similarity=0.306 Sum_probs=228.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....+++++--|...+++.+|+++|+.+|+|..|+++.|..+++++|.|||+|.+.+....|+. |.+..+.|.+|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4456899999999999999999999999999999999999999999999999999999999997 999999999999987
Q ss_pred ccCCC--------CCC---CCCCc-cEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC-CCCceeEEEEEEcCHHHHH
Q 007673 106 SHRDP--------SIR---KSGTG-NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQ 172 (593)
Q Consensus 106 s~~~~--------~~~---~~~~~-~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~g~s~g~afV~F~~~e~A~ 172 (593)
+.... ... ..+.. .|+|+||..++++++|+.+|+.||.|..+.+..|. +|.++||||++|.+.++|+
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 65321 111 01122 28999999999999999999999999999999994 9999999999999999999
Q ss_pred HHHHHhCCceecCeeEEeccccchhhhHHHHh-hccccceeccCCCCCC-CHHHHHHhhccCCCeeEEEEeeCCCCCcce
Q 007673 173 NAIDKLNGMLINDKQVFVGHFLRKQERETVAI-KTKFNNVFVKNLDEST-TDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250 (593)
Q Consensus 173 ~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~-~~~~~~l~V~nlp~~~-te~~l~~~F~~~G~v~~v~i~~~~~g~~~g 250 (593)
+|++.|||..+.|+.|.|.....+........ ...+.-.--.+|+... ...++...|-+.-.+.
T Consensus 335 ~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~-------------- 400 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRS-------------- 400 (549)
T ss_pred HHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCcc--------------
Confidence 99999999999999999987776655432210 0000001111222111 1233333322211100
Q ss_pred eEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCC--C----
Q 007673 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI--D---- 324 (593)
Q Consensus 251 ~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~--~---- 324 (593)
.-.+...|..++..+......+-...+....+... ... -.....|+.++|+=+.- |
T Consensus 401 ----~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~-------------~p~-~~i~t~C~lL~nMFdpstete~n~ 462 (549)
T KOG0147|consen 401 ----LPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA-------------SPA-FDIPTQCLLLSNMFDPSTETEPNW 462 (549)
T ss_pred ----ccchhhhHHHhccccchHHhhcCCcCccccCcccc-------------ccc-cCCccHHHHHhhcCCcccccCcch
Confidence 01112222222222221111111111111100000 000 01345567777762221 1
Q ss_pred ----HHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 325 ----DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 325 ----~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
.+|+.+.+.+||.|..|.|-.. +.||.||.|.+.+.|..|+.+|||..|.||.|...|-..
T Consensus 463 d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 463 DQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred hhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 2778888999999998877655 458999999999999999999999999999999988754
No 32
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=206.94 Aligned_cols=272 Identities=22% Similarity=0.452 Sum_probs=215.8
Q ss_pred CccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccc
Q 007673 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195 (593)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~ 195 (593)
-++|||+.|...+.++.|+..|..||.|.++.+..| -+++++|||||+|+-+|.|..|++.+||..++||.|.|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 357999999999999999999999999999999999 5899999999999999999999999999999999999986543
Q ss_pred hhhhHHHH-----hhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCC-CCcceeEEEEeCCHHHHHHHHHHH
Q 007673 196 KQERETVA-----IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD-GKSKCFGFVNFENADDAAKAVEAL 269 (593)
Q Consensus 196 ~~~~~~~~-----~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~-g~~~g~afV~F~~~e~A~~Ai~~l 269 (593)
-...+... ....++++||..+..+.++++|+.+|+.||+|..|.+-++.+ +..+||+|++|.+..+...|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 32222211 235688999999999999999999999999999999999865 568999999999999999999999
Q ss_pred CCCccCCceEEEeccccchHHH----------------------------------------------------------
Q 007673 270 NGKKFDDREWYVGKAQKKSERE---------------------------------------------------------- 291 (593)
Q Consensus 270 ~g~~~~~~~l~v~~a~~~~~~~---------------------------------------------------------- 291 (593)
|-..++|..|+|..+.......
T Consensus 273 NlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l 352 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTL 352 (544)
T ss_pred chhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCc
Confidence 9999999999998774331100
Q ss_pred ------------------------------------------------------HHHhhhHH--hhh-------------
Q 007673 292 ------------------------------------------------------QELKGQFE--QAM------------- 302 (593)
Q Consensus 292 ------------------------------------------------------~~~~~~~~--~~~------------- 302 (593)
.++..+.+ ...
T Consensus 353 ~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sA 432 (544)
T KOG0124|consen 353 PQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSA 432 (544)
T ss_pred cccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccH
Confidence 00000000 000
Q ss_pred -----hhhhcccccceeeeccC--CCCCC---HHHHHHHhhcCCCeeEEEEeeCCCCCC-----ccEEEEEeCCHHHHHH
Q 007673 303 -----KETVDKFQGLNLYIKNL--GDSID---DEKLKELFSEFGTITSCKVMRDPSGIS-----KGSGFVAFSTPEEASR 367 (593)
Q Consensus 303 -----~~~~~~~~~~~l~V~nl--~~~~~---~~~l~~~F~~~G~i~~v~i~~~~~g~~-----~g~afV~f~~~~~A~~ 367 (593)
..-.....++.+.++|+ |.+++ +.+|++.+.+||.|.+|.|.....|.. .---||+|....++.+
T Consensus 433 RhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~r 512 (544)
T KOG0124|consen 433 RHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHR 512 (544)
T ss_pred HHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHH
Confidence 00011123455777887 45555 468999999999999998887654431 2346999999999999
Q ss_pred HHHHhCCceecCeeeEEEecc
Q 007673 368 ALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 368 A~~~~~~~~~~~~~l~v~~~~ 388 (593)
|.+.|+|+.|+|+++..+...
T Consensus 513 ak~ALdGRfFgGr~VvAE~YD 533 (544)
T KOG0124|consen 513 AKQALDGRFFGGRKVVAEVYD 533 (544)
T ss_pred HHHhhccceecCceeehhhhh
Confidence 999999999999999776553
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.7e-25 Score=209.45 Aligned_cols=166 Identities=23% Similarity=0.498 Sum_probs=150.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~ 108 (593)
++++|||.+..++.|+.|+..|..||+|++|...-|..|++.+|||||+|+-+|.|.-|++.||+..+.||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999975443
Q ss_pred CCCCC---------CCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC-CCCceeEEEEEEcCHHHHHHHHHHh
Q 007673 109 DPSIR---------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 178 (593)
Q Consensus 109 ~~~~~---------~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~g~s~g~afV~F~~~e~A~~Al~~l 178 (593)
-+... ...-.+|||..+.++.+++||+..|+.||.|+.|.+..++ .+.++||||++|.+..+-.+|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 22111 1234579999999999999999999999999999999995 5678999999999999999999999
Q ss_pred CCceecCeeEEecccc
Q 007673 179 NGMLINDKQVFVGHFL 194 (593)
Q Consensus 179 ~g~~~~g~~l~v~~~~ 194 (593)
|-..++|..++|..+.
T Consensus 273 NlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCV 288 (544)
T ss_pred chhhcccceEeccccc
Confidence 9999999999997553
No 34
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.92 E-value=2.3e-24 Score=208.65 Aligned_cols=348 Identities=22% Similarity=0.292 Sum_probs=257.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc--ccCCcEEEE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT--PLNNKSIRI 103 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~--~i~g~~i~v 103 (593)
..+++-|.++|||++++|++|.+++..||+|..+...+.+. .||++|.+.+.|..-+...... .+.|++|.|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 45789999999999999999999999999999999887643 7999999999998744433222 368899998
Q ss_pred eeccCCC-----------------------------CC--CCCC-------CccEEEeCCCcccCHHHHHhhhccccceE
Q 007673 104 MYSHRDP-----------------------------SI--RKSG-------TGNIFIKNLDKSIDHKALHDTFSSFGNIL 145 (593)
Q Consensus 104 ~~s~~~~-----------------------------~~--~~~~-------~~~lfV~nLp~~~t~~~L~~~f~~~G~i~ 145 (593)
.|++-.. +. ...+ .-.++|.|+-..++-+-|+.+|++||.|+
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 8875210 00 0001 11367899999999999999999999999
Q ss_pred EEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecC--eeEEecccc----------chhhh--------H-----
Q 007673 146 SCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND--KQVFVGHFL----------RKQER--------E----- 200 (593)
Q Consensus 146 ~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g--~~l~v~~~~----------~~~~~--------~----- 200 (593)
.+.-....++. .|.|+|.+.+.|..|...|+|.-|.+ ..+++.+.. .++.- .
T Consensus 179 KIiTF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~ 255 (492)
T KOG1190|consen 179 KIITFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPS 255 (492)
T ss_pred EEEEEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccc
Confidence 88777653332 59999999999999999999875532 344443321 11100 0
Q ss_pred ------------------HH--------------Hhhcc--ccceeccCCC-CCCCHHHHHHhhccCCCeeEEEEeeCCC
Q 007673 201 ------------------TV--------------AIKTK--FNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGD 245 (593)
Q Consensus 201 ------------------~~--------------~~~~~--~~~l~V~nlp-~~~te~~l~~~F~~~G~v~~v~i~~~~~ 245 (593)
.. ..... ...|.|.||. ..+|.+-|..+|+-||.|..|.|+..+
T Consensus 256 l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk- 334 (492)
T KOG1190|consen 256 LDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK- 334 (492)
T ss_pred cchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-
Confidence 00 00001 2457778875 568999999999999999999999874
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHH-------HHHHhhhHHhhh---------hhhh-cc
Q 007673 246 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSER-------EQELKGQFEQAM---------KETV-DK 308 (593)
Q Consensus 246 g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~-------~~~~~~~~~~~~---------~~~~-~~ 308 (593)
+.-|.|.+.+...|.-|++.|+|..+.|+.|+|.......-. ...+...+.... ++-. -.
T Consensus 335 ---kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~ 411 (492)
T KOG1190|consen 335 ---KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIF 411 (492)
T ss_pred ---CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccC
Confidence 347999999999999999999999999999999988654211 111111111111 1111 12
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe-eeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-~l~v~~~ 387 (593)
+++.+|++.|+|.+++||+|+..|..-|-..+...... +.+.++++.+.+.++|..|+..+|++.+++. .|+|+|+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 45668999999999999999999999887655543332 2466999999999999999999999999765 8999998
Q ss_pred cc
Q 007673 388 QR 389 (593)
Q Consensus 388 ~~ 389 (593)
+.
T Consensus 489 ks 490 (492)
T KOG1190|consen 489 KS 490 (492)
T ss_pred cc
Confidence 64
No 35
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=1e-24 Score=225.47 Aligned_cols=258 Identities=25% Similarity=0.414 Sum_probs=215.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....+.|+|+|||..+..++|.++|..||.|..|.+.+. |. -|+|.|.++.+|.+|+..|.++.+..-++.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 345689999999999999999999999999999955432 11 489999999999999999999999998888877
Q ss_pred ccCCCCC----------------------C--------------------------CCCCccEEEeCCCcccCHHHHHhh
Q 007673 106 SHRDPSI----------------------R--------------------------KSGTGNIFIKNLDKSIDHKALHDT 137 (593)
Q Consensus 106 s~~~~~~----------------------~--------------------------~~~~~~lfV~nLp~~~t~~~L~~~ 137 (593)
+..+--. + ....+.|||+||..+.+.++|...
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 6421100 0 001223999999999999999999
Q ss_pred hccccceEEEEEeeCCCCC----ceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchhhh---HHHHhhccccc
Q 007673 138 FSSFGNILSCKIATDGSGQ----SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQER---ETVAIKTKFNN 210 (593)
Q Consensus 138 f~~~G~i~~~~i~~~~~g~----s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~---~~~~~~~~~~~ 210 (593)
|+..|.|++|.|.+...+. |.|||||+|.+.++|..|++.|+|+.+.|+.|.|..+..+... .....+...+.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tK 615 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTK 615 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccce
Confidence 9999999999998875443 5599999999999999999999999999999999887711110 11111223578
Q ss_pred eeccCCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchH
Q 007673 211 VFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289 (593)
Q Consensus 211 l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~-~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~ 289 (593)
|.|+|+|+..+..+|+.+|..||.+.+|.+... ..+.++|||||.|-+..+|.+|+++|...++-|+.|.+.|+.....
T Consensus 616 IlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 616 ILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred eeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 999999999999999999999999999999987 4567799999999999999999999999999999999999987655
No 36
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=9.2e-24 Score=227.15 Aligned_cols=177 Identities=31% Similarity=0.502 Sum_probs=151.6
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
..++|||+|||..+++++|+++|+.||.|.+|.++.+. +++++|||||+|.+.++|.+|+. +++..+.|+.|.|....
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 45689999999999999999999999999999999984 58899999999999999999996 99999999999998765
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 364 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 364 (593)
.......... ..........++|||+||+..+++++|+++|+.||.|.+|.++.+. +|.++|||||+|.+.++
T Consensus 167 ~~~~~~~~~~------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 167 AEKNRAAKAA------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred hhhhhhhhcc------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 4332221100 0001111236789999999999999999999999999999999886 46899999999999999
Q ss_pred HHHHHHHhCCceecCeeeEEEeccch
Q 007673 365 ASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 365 A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|.+|+..|||..|.|++|.|.|+...
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999999998743
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.6e-24 Score=194.69 Aligned_cols=168 Identities=32% Similarity=0.607 Sum_probs=153.2
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a 284 (593)
...++|.|.-||..++++|++.+|+..|+|++|++.+|+ .|.+-||+||+|.++++|.+|+..++|-.+..+.|.|+++
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 456889999999999999999999999999999999996 6999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHH
Q 007673 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (593)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~ 363 (593)
.+.+.. ..+.+|||.+||...|..||..+|++||.|..-+|+.|. +|.+||.|||.|....
T Consensus 119 RPSs~~------------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 119 RPSSDS------------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRI 180 (360)
T ss_pred cCChhh------------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchh
Confidence 765443 245689999999999999999999999999888888775 7899999999999999
Q ss_pred HHHHHHHHhCCceecC--eeeEEEeccchH
Q 007673 364 EASRALAEMNGKMIVS--KPLYVAVAQRKE 391 (593)
Q Consensus 364 ~A~~A~~~~~~~~~~~--~~l~v~~~~~~~ 391 (593)
+|+.||+.|||..--| .+|.|.|+....
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 9999999999987654 689999998653
No 38
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.90 E-value=1.3e-24 Score=165.03 Aligned_cols=71 Identities=61% Similarity=0.915 Sum_probs=68.9
Q ss_pred ccchhhhcCCCHHHHHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHH
Q 007673 497 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 567 (593)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l 567 (593)
+.+++.|+++++++||++|||+||++|.+++|++|+|||||||||+++||++||+|++.|++||+||+++|
T Consensus 2 ~~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 2 PLTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp STSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cchHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999987
No 39
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=7.5e-23 Score=187.51 Aligned_cols=187 Identities=31% Similarity=0.484 Sum_probs=158.6
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCcc---CCceEEEec
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKF---DDREWYVGK 283 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~---~~~~l~v~~ 283 (593)
..+.|||+=|.+.-+|||++.+|..||.|++|.+.+..+|.+||++||.|.+..+|..||..|||... -...|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999764 356788888
Q ss_pred cccchHHHHHHhhh------------------------------------------------------------------
Q 007673 284 AQKKSEREQELKGQ------------------------------------------------------------------ 297 (593)
Q Consensus 284 a~~~~~~~~~~~~~------------------------------------------------------------------ 297 (593)
++...||......+
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 87766543221100
Q ss_pred ---------------------------------------------------------------------------HH---
Q 007673 298 ---------------------------------------------------------------------------FE--- 299 (593)
Q Consensus 298 ---------------------------------------------------------------------------~~--- 299 (593)
+.
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00
Q ss_pred ----------------hhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCH
Q 007673 300 ----------------QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTP 362 (593)
Q Consensus 300 ----------------~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 362 (593)
.........+.+|||||-.||.+..+.||-..|-+||.|.+.+++.|. ++.||+||||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000011234469999999999999999999999999999999998885 788999999999999
Q ss_pred HHHHHHHHHhCCceecCeeeEEEeccchHHH
Q 007673 363 EEASRALAEMNGKMIVSKPLYVAVAQRKEER 393 (593)
Q Consensus 363 ~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r 393 (593)
.+|..||..|||+.|+-|+|+|.+.++|+..
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999887643
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=8.2e-23 Score=177.66 Aligned_cols=168 Identities=33% Similarity=0.556 Sum_probs=150.2
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
...+|||+||+..++++.|.++|-..|.|.++.+.+|. +...+||||++|.++++|.-|++-|+...+.|+.|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45689999999999999999999999999999999985 46689999999999999999999999999999999999886
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEE-EEeeCCC-CCCccEEEEEeCCHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDPS-GISKGSGFVAFSTPE 363 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v-~i~~~~~-g~~~g~afV~f~~~~ 363 (593)
.... ....+.+|||+||++.+++.-|.+.|+.||.+.+. +++++.+ |.++|||||.|++.+
T Consensus 88 ~~~~-----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe 150 (203)
T KOG0131|consen 88 AHQK-----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE 150 (203)
T ss_pred cccc-----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH
Confidence 2221 12244689999999999999999999999998764 7788764 889999999999999
Q ss_pred HHHHHHHHhCCceecCeeeEEEeccchH
Q 007673 364 EASRALAEMNGKMIVSKPLYVAVAQRKE 391 (593)
Q Consensus 364 ~A~~A~~~~~~~~~~~~~l~v~~~~~~~ 391 (593)
.+.+|+..+||..++.+++.|+++..+.
T Consensus 151 asd~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 151 ASDAAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHHHHhccchhcCCceEEEEEEecC
Confidence 9999999999999999999999998654
No 41
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.88 E-value=5e-21 Score=190.77 Aligned_cols=335 Identities=16% Similarity=0.214 Sum_probs=241.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..--|.+++|||++|++||.++|+.+ .|.++.+.|+ +++..|-|||+|.+.+|+++|++ .+-..+.-+.|.|..+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 45678899999999999999999999 6888777764 68889999999999999999999 57677888999998765
Q ss_pred CCCC-------CCCC--CCccEEEeCCCcccCHHHHHhhhccccceEE-EEEeeCCCCCceeEEEEEEcCHHHHHHHHHH
Q 007673 108 RDPS-------IRKS--GTGNIFIKNLDKSIDHKALHDTFSSFGNILS-CKIATDGSGQSKGFGFVQFENKESAQNAIDK 177 (593)
Q Consensus 108 ~~~~-------~~~~--~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~-~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~ 177 (593)
..+. -.++ ....|.+++||..|+++||.++|+..-.|.. +.+..+..+++.|-|||+|++.+.|+.|+.+
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH
Confidence 4331 1122 5667999999999999999999998855544 5566778888999999999999999999965
Q ss_pred hCCceecCeeEEeccccchhhhHHH------------------------------------------------------H
Q 007673 178 LNGMLINDKQVFVGHFLRKQERETV------------------------------------------------------A 203 (593)
Q Consensus 178 l~g~~~~g~~l~v~~~~~~~~~~~~------------------------------------------------------~ 203 (593)
+...|+-+.|.|-.+......... .
T Consensus 165 -hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 165 -HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred -HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 445556666665433221111000 0
Q ss_pred h----------------h----------------cc-ccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcce
Q 007673 204 I----------------K----------------TK-FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKC 250 (593)
Q Consensus 204 ~----------------~----------------~~-~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g 250 (593)
. . .. ...++..+||+..++.++.++|+..-.+ .+.+-...+|+..|
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TG 322 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATG 322 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCC
Confidence 0 0 00 0237788999999999999999987655 67777778899999
Q ss_pred eEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhh--------------------------------hH
Q 007673 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG--------------------------------QF 298 (593)
Q Consensus 251 ~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~--------------------------------~~ 298 (593)
-++|+|.+.++|..|+. -++..+..+.+..-.-....-....... ..
T Consensus 323 EAdveF~t~edav~Ams-kd~anm~hrYVElFln~~~ga~g~~~~s~~~g~~~~~~~~~~Gg~a~g~~~gG~~g~~~~~~ 401 (510)
T KOG4211|consen 323 EADVEFATGEDAVGAMG-KDGANMGHRYVELFLNGAPGASGGGGPSGPGGVGSSGDRNGGGGYASGSYGGGGNGGGGRGS 401 (510)
T ss_pred cceeecccchhhHhhhc-cCCcccCcceeeecccCCcccccCccCCCCCCccccccccCCCCccccccccCCCCCccccC
Confidence 99999999999999985 3444444433322211100000000000 00
Q ss_pred ------------------HhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeC
Q 007673 299 ------------------EQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360 (593)
Q Consensus 299 ------------------~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~ 360 (593)
....-.......-.+|..+++|...++.++.++|.+++. -.|.+..|+++...+-|-|.|.
T Consensus 402 ~~G~~~~~~~~~~~~Gy~g~~~~~~~~~~e~~~~~~rgap~~a~eadv~d~~~~~~~-a~~~~~yd~~~~~~~~a~~~~~ 480 (510)
T KOG4211|consen 402 PYGRPSDGYSSPGGGGYSGPRGYGRGPQNEHFVIRMRGAPFRASEADVYDFFHPIRP-AQVELLYDHQFQRSGDARVIFY 480 (510)
T ss_pred CCCCCcccccCCCCCCCcCcccCCCCccccccccCcCCCCccccccchhhcccccCc-ccccccccccccccCceeEEEe
Confidence 000000011122345778899999999999999999965 5678888888777889999999
Q ss_pred CHHHHHHHHH
Q 007673 361 TPEEASRALA 370 (593)
Q Consensus 361 ~~~~A~~A~~ 370 (593)
+.++++.|+.
T Consensus 481 ~~~~~q~a~~ 490 (510)
T KOG4211|consen 481 NRKDYQDALM 490 (510)
T ss_pred chhhhHHHHH
Confidence 9999999986
No 42
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.86 E-value=9.3e-22 Score=182.91 Aligned_cols=147 Identities=23% Similarity=0.540 Sum_probs=137.7
Q ss_pred ceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchH
Q 007673 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289 (593)
Q Consensus 210 ~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~ 289 (593)
.|||+|||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|..|+..||+..+.|..|.|..+..++.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 5899999999999999999999999999999965 999999999999999999999999999999988766632
Q ss_pred HHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHH
Q 007673 290 REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 369 (593)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 369 (593)
..++|+|+||.+.++..||+..|++||.|.+++|++| |+||.|.-.++|..|+
T Consensus 77 --------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 77 --------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAI 129 (346)
T ss_pred --------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHH
Confidence 4568999999999999999999999999999999987 9999999999999999
Q ss_pred HHhCCceecCeeeEEEeccch
Q 007673 370 AEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 370 ~~~~~~~~~~~~l~v~~~~~~ 390 (593)
+.|+|..|.|++++|.++..+
T Consensus 130 r~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 130 RGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred hcccccccccceeeeeeeccc
Confidence 999999999999999998654
No 43
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.85 E-value=4.4e-21 Score=178.42 Aligned_cols=150 Identities=24% Similarity=0.479 Sum_probs=137.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
-.|||||||..+++.+|+.+|++||+|+++.|+++ |+||..++...|+.|+..|++..|+|..|.|.-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999875 9999999999999999999999999999999977654
Q ss_pred CCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEE
Q 007673 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 189 (593)
Q Consensus 110 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~ 189 (593)
...+.+|+|+||.+.+++++|+..|.+||.|.+|+|++ +|+||+|.-.++|..|++.|++..+.|+.+.
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~ 143 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMH 143 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceee
Confidence 23456899999999999999999999999999999975 5999999999999999999999999999999
Q ss_pred eccccchhh
Q 007673 190 VGHFLRKQE 198 (593)
Q Consensus 190 v~~~~~~~~ 198 (593)
|....++..
T Consensus 144 vq~stsrlr 152 (346)
T KOG0109|consen 144 VQLSTSRLR 152 (346)
T ss_pred eeeeccccc
Confidence 977665543
No 44
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.83 E-value=3.6e-18 Score=163.90 Aligned_cols=344 Identities=20% Similarity=0.157 Sum_probs=251.3
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHh--cCCcccCC
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV--LNFTPLNN 98 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~--ln~~~i~g 98 (593)
.+......+-.+.|++|...++|.+|.+.++.||+|..+..+..++ .|.|+|++.+.|+.|+.. -|...+.|
T Consensus 23 ~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r------~alvefedi~~akn~Vnfaa~n~i~i~g 96 (494)
T KOG1456|consen 23 ADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR------QALVEFEDIEGAKNCVNFAADNQIYIAG 96 (494)
T ss_pred CCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc------eeeeeeccccchhhheehhccCcccccC
Confidence 3555567788999999999999999999999999999988776543 699999999999999853 34556778
Q ss_pred cEEEEeeccCCCCCC-----CCCCcc--EEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHH
Q 007673 99 KSIRIMYSHRDPSIR-----KSGTGN--IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171 (593)
Q Consensus 99 ~~i~v~~s~~~~~~~-----~~~~~~--lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A 171 (593)
...-+.++..+...| ...... +-|-|--..+|.+-|+.+....|.|+.|.|.+. +--.|.|+|++.+.|
T Consensus 97 q~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~A 172 (494)
T KOG1456|consen 97 QQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVA 172 (494)
T ss_pred chhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHH
Confidence 777777763222111 111222 235566678999999999999999999999875 334899999999999
Q ss_pred HHHHHHhCCcee--cCeeEEeccccchhhhHHHHhh--------------------------------------------
Q 007673 172 QNAIDKLNGMLI--NDKQVFVGHFLRKQERETVAIK-------------------------------------------- 205 (593)
Q Consensus 172 ~~Al~~l~g~~~--~g~~l~v~~~~~~~~~~~~~~~-------------------------------------------- 205 (593)
++|.+.|||..| +-..+.|+++.+...+..+...
T Consensus 173 qrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y 252 (494)
T KOG1456|consen 173 QRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGY 252 (494)
T ss_pred HHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCC
Confidence 999999999654 3345555544332110000000
Q ss_pred --------------------------------ccccceeccCCCC-CCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeE
Q 007673 206 --------------------------------TKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFG 252 (593)
Q Consensus 206 --------------------------------~~~~~l~V~nlp~-~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~a 252 (593)
.....+.|.+|.. .++-+.|.++|-.||.|..|.+++.+. |.|
T Consensus 253 ~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----gta 328 (494)
T KOG1456|consen 253 YSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----GTA 328 (494)
T ss_pred cccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----cee
Confidence 0001255666653 456688999999999999999998864 479
Q ss_pred EEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHH----------HHh-------h---hHHhhhhhhhcccccc
Q 007673 253 FVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQ----------ELK-------G---QFEQAMKETVDKFQGL 312 (593)
Q Consensus 253 fV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~----------~~~-------~---~~~~~~~~~~~~~~~~ 312 (593)
.|+.-+....++|+..|++..+.|.+|.+.......-... .++ . ..++..++ .-.++++
T Consensus 329 mVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKN-rIq~Ps~ 407 (494)
T KOG1456|consen 329 MVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKN-RIQPPSN 407 (494)
T ss_pred EEEcCcHHHHHHHHHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcc-cccCCcc
Confidence 9999999999999999999999999998887643221000 000 0 01111111 2245678
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCC-eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 380 (593)
.|+.-|.|..+||+.|.++|..-+. .++++|+.-++-+ ..-|.++|++.++|..|+..+|...|.+.
T Consensus 408 vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 408 VLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred eeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccc-cccceeeeehHHHHHHHHHHhccccccCC
Confidence 8999999999999999999987764 5778887765333 34689999999999999999999988653
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.82 E-value=1.2e-19 Score=177.30 Aligned_cols=248 Identities=20% Similarity=0.257 Sum_probs=207.4
Q ss_pred CccEEEeCCCcccCHHHHHhhhc-cccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccc
Q 007673 117 TGNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195 (593)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~f~-~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~ 195 (593)
.+.+||.|||.++.+.+|+++|+ ..|+|.-|.+..|..|+++|+|.|+|+++|.+++|++.||.+.++|+.|.|.-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 34599999999999999999995 67899999999999999999999999999999999999999999999999976544
Q ss_pred hhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccC
Q 007673 196 KQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275 (593)
Q Consensus 196 ~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~ 275 (593)
.+..+....-..-.+.|+.++....-..-|...|+--|.+..-.+.+|.++++++..+++|++.-.+..++.-+......
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 33322222223446799999998888888999998888888888889999999999999999877777777644444333
Q ss_pred CceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEE
Q 007673 276 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 355 (593)
Q Consensus 276 ~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~a 355 (593)
.+.+.. +..+....+||.||...+..+.|++.|.--|.|++|.+-.|+.|.++|++
T Consensus 204 lr~~h~------------------------f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~ 259 (608)
T KOG4212|consen 204 LRSLHI------------------------FSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFA 259 (608)
T ss_pred hhhccC------------------------CCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCee
Confidence 333321 11223346999999999999999999999999999999999999999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 356 fV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
.++|..+-+|..||..+++..+.+++..+.+..
T Consensus 260 vi~y~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 260 VIEYDHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred EEEecchHHHHHHHHhhccCCCccccceeeccc
Confidence 999999999999999999988888888888753
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.76 E-value=7e-17 Score=161.40 Aligned_cols=263 Identities=18% Similarity=0.248 Sum_probs=196.9
Q ss_pred CccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccch
Q 007673 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (593)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~ 196 (593)
..-|.+++||+++|+++|.++|+.+ .|.++++.+ .+|+..|-|||+|++++++.+|+++ +.+.+..+.|.|-.....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 3457889999999999999999999 577765555 4788999999999999999999964 777888888888665433
Q ss_pred hhhHHH-----HhhccccceeccCCCCCCCHHHHHHhhccCCCeeE-EEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHC
Q 007673 197 QERETV-----AIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDGDGKSKCFGFVNFENADDAAKAVEALN 270 (593)
Q Consensus 197 ~~~~~~-----~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~-v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~ 270 (593)
...... ........|.+.+||+.++++||.++|+..-.|.. +.+..+..+++.|-|||.|++.+.|+.|+. -|
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rh 165 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RH 165 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HH
Confidence 221000 00124557999999999999999999999888777 556777889999999999999999999996 57
Q ss_pred CCccCCceEEEeccccchHHHHHHhh--------hHHh------------h-----------------------------
Q 007673 271 GKKFDDREWYVGKAQKKSEREQELKG--------QFEQ------------A----------------------------- 301 (593)
Q Consensus 271 g~~~~~~~l~v~~a~~~~~~~~~~~~--------~~~~------------~----------------------------- 301 (593)
.+.|..+.|.|-.+.....+...-.. .++. .
T Consensus 166 re~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~ 245 (510)
T KOG4211|consen 166 RENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDY 245 (510)
T ss_pred HHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccc
Confidence 77888888888776554433322000 0000 0
Q ss_pred -----------h---hh----h--------hcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEE
Q 007673 302 -----------M---KE----T--------VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSG 355 (593)
Q Consensus 302 -----------~---~~----~--------~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~a 355 (593)
. .+ . .-...+..++.++||...++.++..+|+..-.+ .|.|-..++|+..|-|
T Consensus 246 ~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEA 324 (510)
T KOG4211|consen 246 GNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEA 324 (510)
T ss_pred ccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcc
Confidence 0 00 0 000012458889999999999999999988554 8888888899999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 356 FVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 356 fV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
+|+|.|.++|..|+. -++..+..+-+.+.
T Consensus 325 dveF~t~edav~Ams-kd~anm~hrYVElF 353 (510)
T KOG4211|consen 325 DVEFATGEDAVGAMG-KDGANMGHRYVELF 353 (510)
T ss_pred eeecccchhhHhhhc-cCCcccCcceeeec
Confidence 999999999999997 45555555555443
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=2.7e-18 Score=168.64 Aligned_cols=170 Identities=29% Similarity=0.472 Sum_probs=151.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
+.++|+||+|+|+++|+.|++.|++||.|..+.+++|..+++++||+||+|.+.+...++|.. ....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 688999999999999999999999999999999999999999999999999999999999984 4467899999888776
Q ss_pred CCCCCCCCC----CccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCce
Q 007673 108 RDPSIRKSG----TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (593)
Q Consensus 108 ~~~~~~~~~----~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~ 182 (593)
......... ...|||++||.+++++++++.|..||.|..+.+..| .....+||+||.|.+++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 554443333 448999999999999999999999999999999988 688899999999999999999884 46788
Q ss_pred ecCeeEEeccccchhhh
Q 007673 183 INDKQVFVGHFLRKQER 199 (593)
Q Consensus 183 ~~g~~l~v~~~~~~~~~ 199 (593)
++++.+.|..+.++...
T Consensus 163 ~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVM 179 (311)
T ss_pred ecCceeeEeeccchhhc
Confidence 99999999988877653
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=4e-17 Score=142.21 Aligned_cols=148 Identities=20% Similarity=0.355 Sum_probs=126.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..+++|||||||.++-|.+|.++|.+||.|..|.+... ...-+||||+|++..||+.|+.-.++..++|..|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45789999999999999999999999999999988543 234579999999999999999999999999999999998
Q ss_pred cCCCC------------------------CCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEE
Q 007673 107 HRDPS------------------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGF 162 (593)
Q Consensus 107 ~~~~~------------------------~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~af 162 (593)
+.-.+ ..+.....|.|.+||.+-++++|++.....|.|.-..+.+| |++.
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~Gv 154 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGV 154 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------ccee
Confidence 64311 11223456999999999999999999999999977777664 5889
Q ss_pred EEEcCHHHHHHHHHHhCCcee
Q 007673 163 VQFENKESAQNAIDKLNGMLI 183 (593)
Q Consensus 163 V~F~~~e~A~~Al~~l~g~~~ 183 (593)
|+|...|+-+-|+.+|+...+
T Consensus 155 V~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 155 VEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeeehhhHHHHHHhhccccc
Confidence 999999999999998876543
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.8e-17 Score=152.37 Aligned_cols=168 Identities=30% Similarity=0.446 Sum_probs=145.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc-C--CcEEEEe
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL-N--NKSIRIM 104 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i-~--g~~i~v~ 104 (593)
..+.||||-|...-+|+|++.+|..||.|.++.|.|... +.|+|+|||.|.+..+|..||..|++..- - ...+-|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 689999999999999999999999999999999999864 78999999999999999999999997642 2 2455666
Q ss_pred eccCCC--------------------------------------------------------------------------
Q 007673 105 YSHRDP-------------------------------------------------------------------------- 110 (593)
Q Consensus 105 ~s~~~~-------------------------------------------------------------------------- 110 (593)
|++.+.
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 654100
Q ss_pred --------------------------------------------------------------------------------
Q 007673 111 -------------------------------------------------------------------------------- 110 (593)
Q Consensus 111 -------------------------------------------------------------------------------- 110 (593)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred ----------------------CCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcC
Q 007673 111 ----------------------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFEN 167 (593)
Q Consensus 111 ----------------------~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~ 167 (593)
.....+.+||||..||....+.+|..+|-.||.|.+.|+..| .++.+|.||||.|.+
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 011235788999999999999999999999999999999999 688999999999999
Q ss_pred HHHHHHHHHHhCCceecCeeEEeccccch
Q 007673 168 KESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (593)
Q Consensus 168 ~e~A~~Al~~l~g~~~~g~~l~v~~~~~~ 196 (593)
..+|..||..+||..|+-+++.|..-.++
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 99999999999999999998888654443
No 50
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=7.8e-18 Score=170.44 Aligned_cols=179 Identities=25% Similarity=0.426 Sum_probs=150.0
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
..+++|+..+....++-+|.++|+.+|.|..|.++.|. .+.++|.+||+|.+.+..-.|+ .|.|..+-|.++.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccH
Confidence 45678988888889999999999999999999999995 5889999999999999999999 699999999999998765
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 364 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 364 (593)
....+...... .........+...|||+||...+++++|+.+|++||.|..|.++.|. +|.++|||||+|.+.++
T Consensus 257 aeknr~a~~s~----a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 257 AEKNRAANASP----ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred HHHHHHHhccc----cccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 44333221111 11101111223339999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHHHHhCCceecCeeeEEEeccch
Q 007673 365 ASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 365 A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|.+|+..|||..+.|+.|+|.....+
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeee
Confidence 99999999999999999999877643
No 51
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.73 E-value=5e-17 Score=158.13 Aligned_cols=263 Identities=16% Similarity=0.297 Sum_probs=187.7
Q ss_pred CCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCC--ceecCeeEEeccc
Q 007673 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG--MLINDKQVFVGHF 193 (593)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g--~~~~g~~l~v~~~ 193 (593)
.+.-|.++|||.++++++|..++..||.|..+...+. +..||++|.++++|...+..... -.+.|+.++|.+.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG-----knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~s 101 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG-----KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYS 101 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc-----chhhhhhhcchhhhhheeecccccCccccCcceeehhh
Confidence 4556899999999999999999999999999988763 44899999999999885433222 2355666666543
Q ss_pred cchh---------hhHHHH-h------------------------hccccceeccCCCCCCCHHHHHHhhccCCCeeEEE
Q 007673 194 LRKQ---------ERETVA-I------------------------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAV 239 (593)
Q Consensus 194 ~~~~---------~~~~~~-~------------------------~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~ 239 (593)
.-+. .|.... . ...--.++|.|+-+.++-+-|..+|++||.|..|.
T Consensus 102 n~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 102 NHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred hHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 2110 000000 0 00111367888889999999999999999999988
Q ss_pred EeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCC--ceEEEecc----------ccchHHHHHHh---h--------
Q 007673 240 VMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD--REWYVGKA----------QKKSEREQELK---G-------- 296 (593)
Q Consensus 240 i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~--~~l~v~~a----------~~~~~~~~~~~---~-------- 296 (593)
-....++. .|.|.|.+.++|..|...|+|+.|.+ +.|++.+. ..++..-.... .
T Consensus 182 TF~Knn~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~ 258 (492)
T KOG1190|consen 182 TFTKNNGF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQ 258 (492)
T ss_pred EEecccch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccch
Confidence 77765543 48999999999999999999998743 33443333 22221100000 0
Q ss_pred -----------------------hHHhhhhhhhccc-ccceeeeccCC-CCCCHHHHHHHhhcCCCeeEEEEeeCCCCCC
Q 007673 297 -----------------------QFEQAMKETVDKF-QGLNLYIKNLG-DSIDDEKLKELFSEFGTITSCKVMRDPSGIS 351 (593)
Q Consensus 297 -----------------------~~~~~~~~~~~~~-~~~~l~V~nl~-~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~ 351 (593)
............. .++.|.|.||. +.+|.+.|+.+|.-||.|.+|+|+.++
T Consensus 259 ~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk---- 334 (492)
T KOG1190|consen 259 LMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK---- 334 (492)
T ss_pred hhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----
Confidence 0000000001111 14678888886 569999999999999999999999874
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 352 KGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 352 ~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
+..|.|+|.+...|.-|++.|+|..+.||+|+|.+++-.
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 247999999999999999999999999999999998743
No 52
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=6.1e-17 Score=166.57 Aligned_cols=256 Identities=22% Similarity=0.424 Sum_probs=199.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhcc-----------C-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQV-----------G-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~-----------G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l 91 (593)
....+.+.+||+++|..++|+.+..+|+.- | .+.++.++..+ ++||++|.+.++|..|+. +
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~~-~ 242 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAMA-L 242 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhhc-c
Confidence 345678999999999999999999999864 3 47888887653 499999999999999998 8
Q ss_pred CCcccCCcEEEEeeccCCC---------------------CCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEe
Q 007673 92 NFTPLNNKSIRIMYSHRDP---------------------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA 150 (593)
Q Consensus 92 n~~~i~g~~i~v~~s~~~~---------------------~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~ 150 (593)
++..+.|.++++.-....- ...-.....++|++||..+++.++.++...||.+....++
T Consensus 243 ~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv 322 (500)
T KOG0120|consen 243 DGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLV 322 (500)
T ss_pred cchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheee
Confidence 8899999998886433211 0011234569999999999999999999999999999999
Q ss_pred eC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchhhhHHHHhh------------------ccccce
Q 007673 151 TD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIK------------------TKFNNV 211 (593)
Q Consensus 151 ~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~------------------~~~~~l 211 (593)
.| .+|.++||||.+|.+......|+..|||+.+.++.+.|..+............ .....|
T Consensus 323 ~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 323 KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 99 56899999999999999999999999999999999988766543322111110 011122
Q ss_pred eccCCC--CCC-CH-------HHHHHhhccCCCeeEEEEeeC-CC---CCcceeEEEEeCCHHHHHHHHHHHCCCccCCc
Q 007673 212 FVKNLD--EST-TD-------EDLKKIFGEYGTITSAVVMRD-GD---GKSKCFGFVNFENADDAAKAVEALNGKKFDDR 277 (593)
Q Consensus 212 ~V~nlp--~~~-te-------~~l~~~F~~~G~v~~v~i~~~-~~---g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~ 277 (593)
.+.|+- .+. ++ ++++.-+++||.|.+|.+.++ .. ....|..||+|.+.+++++|.++|+|..|.++
T Consensus 403 ~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR 482 (500)
T KOG0120|consen 403 CLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR 482 (500)
T ss_pred hhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc
Confidence 233321 000 11 557777789999999999887 32 34567889999999999999999999999999
Q ss_pred eEEEecccc
Q 007673 278 EWYVGKAQK 286 (593)
Q Consensus 278 ~l~v~~a~~ 286 (593)
.+...+...
T Consensus 483 tVvtsYyde 491 (500)
T KOG0120|consen 483 TVVASYYDE 491 (500)
T ss_pred EEEEEecCH
Confidence 998877643
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.9e-16 Score=140.62 Aligned_cols=86 Identities=31% Similarity=0.604 Sum_probs=81.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
...+++|||+|||+++||++|+++|++||.|.+|+++.|+.|++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007673 106 SHRDPS 111 (593)
Q Consensus 106 s~~~~~ 111 (593)
+...+.
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 876544
No 54
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.70 E-value=3.9e-16 Score=142.13 Aligned_cols=158 Identities=25% Similarity=0.450 Sum_probs=135.4
Q ss_pred CccEEEEeCCCCCCCHHHHHH----HHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 28 LTTSLYVGDLDFNVTDSQLYD----LFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~----~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
++.||||.||...+.-++|++ +|++||.|.+|..++ |.+.+|.|||.|.+.+.|..|+..|++..|-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999877 999999999999987 5688999999999999999999999999999999999
Q ss_pred eeccCCCCCC------------------------------------------------CCCCccEEEeCCCcccCHHHHH
Q 007673 104 MYSHRDPSIR------------------------------------------------KSGTGNIFIKNLDKSIDHKALH 135 (593)
Q Consensus 104 ~~s~~~~~~~------------------------------------------------~~~~~~lfV~nLp~~~t~~~L~ 135 (593)
.|++.+.... ......+|+.|||..++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 9987543211 1123458999999999999999
Q ss_pred hhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceec-CeeEEecc
Q 007673 136 DTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGH 192 (593)
Q Consensus 136 ~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~-g~~l~v~~ 192 (593)
.+|..|.....++++.. ..+.|||+|.+...|..|...+++..+. ...+.+..
T Consensus 165 ~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred HHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 99999998888888764 5679999999999999999999887775 55665544
No 55
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.69 E-value=3.6e-17 Score=160.78 Aligned_cols=174 Identities=26% Similarity=0.526 Sum_probs=152.4
Q ss_pred CCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEecccc
Q 007673 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFL 194 (593)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~ 194 (593)
+.+.|||++|++.++++.|++.|+.||.|..|.+.+| .++.++||+||.|.+.+...+++.. ..+.+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 5788999999999999999999999999999999999 6899999999999999999988843 4577899999998888
Q ss_pred chhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCc
Q 007673 195 RKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKK 273 (593)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~ 273 (593)
++..............+||++||.++++++++++|++||.|..+.++.|. ..+.+||+||.|.++++..+++. .+-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 77765444333345679999999999999999999999999999998884 57889999999999999998885 68888
Q ss_pred cCCceEEEeccccchHHH
Q 007673 274 FDDREWYVGKAQKKSERE 291 (593)
Q Consensus 274 ~~~~~l~v~~a~~~~~~~ 291 (593)
|.++.+.|..|.++....
T Consensus 163 ~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ecCceeeEeeccchhhcc
Confidence 999999999998886543
No 56
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=147.50 Aligned_cols=291 Identities=15% Similarity=0.164 Sum_probs=201.1
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
.....+.-+..++|||..+..+|..+|+...-...-+.......++.-|.|.|.|.+.|.-+-|++ .+...+.++.|.|
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryiev 133 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEV 133 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceee
Confidence 334456788999999999999999999977433333333334456667999999999999999998 4656778899998
Q ss_pred eeccCCCC--------------CCCCCCccEEEeCCCcccCHHHHHhhhcc----ccceEEEEEeeCCCCCceeEEEEEE
Q 007673 104 MYSHRDPS--------------IRKSGTGNIFIKNLDKSIDHKALHDTFSS----FGNILSCKIATDGSGQSKGFGFVQF 165 (593)
Q Consensus 104 ~~s~~~~~--------------~~~~~~~~lfV~nLp~~~t~~~L~~~f~~----~G~i~~~~i~~~~~g~s~g~afV~F 165 (593)
..+.-+.. ..+.+.-.|.+++||.+++..++.++|.. -|....+.+++..+|+..|-|||.|
T Consensus 134 Yka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf 213 (508)
T KOG1365|consen 134 YKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF 213 (508)
T ss_pred eccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe
Confidence 76653321 12223334678999999999999999963 2356678888888999999999999
Q ss_pred cCHHHHHHHHHHhCCceecCeeEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCC
Q 007673 166 ENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD 245 (593)
Q Consensus 166 ~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~ 245 (593)
..+++|..|+.+ |...++.|.|.+-. .|..|+.+....+-.- -++...
T Consensus 214 a~ee~aq~aL~k-hrq~iGqRYIElFR---------------------------STaaEvqqvlnr~~s~---pLi~~~- 261 (508)
T KOG1365|consen 214 ACEEDAQFALRK-HRQNIGQRYIELFR---------------------------STAAEVQQVLNREVSE---PLIPGL- 261 (508)
T ss_pred cCHHHHHHHHHH-HHHHHhHHHHHHHH---------------------------HhHHHHHHHHHhhccc---cccCCC-
Confidence 999999999976 33333333332211 1233344433322100 000000
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCH
Q 007673 246 GKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDD 325 (593)
Q Consensus 246 g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~ 325 (593)
+ +-+.+-+ ....+-. .....+|.+++||++.+.
T Consensus 262 ~-sp~~p~~----------------------p~~~~p~------------------------~~~kdcvRLRGLPy~Atv 294 (508)
T KOG1365|consen 262 T-SPLLPGG----------------------PARLVPP------------------------TRSKDCVRLRGLPYEATV 294 (508)
T ss_pred C-CCCCCCC----------------------ccccCCC------------------------CCCCCeeEecCCChhhhH
Confidence 0 0000000 0000000 001337999999999999
Q ss_pred HHHHHHhhcCCC-eeE--EEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchHHHH
Q 007673 326 EKLKELFSEFGT-ITS--CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERR 394 (593)
Q Consensus 326 ~~l~~~F~~~G~-i~~--v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r~ 394 (593)
|+|.++|..|-. |.. |.++.+..|+..|-|||+|.+.++|..|....|++...++.|.|--....+..+
T Consensus 295 EdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 295 EDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred HHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 999999999964 444 888889999999999999999999999999999888888888887766655544
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2.8e-16 Score=161.72 Aligned_cols=268 Identities=21% Similarity=0.396 Sum_probs=199.2
Q ss_pred CccEEEeCCCcccCHHHHHhhhccc-----------c-ceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceec
Q 007673 117 TGNIFIKNLDKSIDHKALHDTFSSF-----------G-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184 (593)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~f~~~-----------G-~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~ 184 (593)
...+++.+++..++++....+|..- | .+++|.+.. .++++|++|.+.++|..|+ .+++..+.
T Consensus 175 ~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 175 ARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhh-cccchhhC
Confidence 4468999999999999999988643 2 366666643 6789999999999999999 56788888
Q ss_pred CeeEEeccccchhhhHHHHh-----------------hccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CC
Q 007673 185 DKQVFVGHFLRKQERETVAI-----------------KTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DG 246 (593)
Q Consensus 185 g~~l~v~~~~~~~~~~~~~~-----------------~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g 246 (593)
|..+.+.............. ....+.++|++||...+++++.++.+.||.+....+..+. +|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 88777755443332211111 1123469999999999999999999999999999998885 48
Q ss_pred CcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhh----hHHhhhhh--hhcccccceeeeccC-
Q 007673 247 KSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKG----QFEQAMKE--TVDKFQGLNLYIKNL- 319 (593)
Q Consensus 247 ~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~l~V~nl- 319 (593)
.++||+|.+|.+......|+..|+|..++++.|.|..+............ ........ .........|.+.|+
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 99999999999999999999999999999999999998655443322211 00000000 111122233444443
Q ss_pred -CCCC-CH-------HHHHHHhhcCCCeeEEEEeeC-CC---CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 320 -GDSI-DD-------EKLKELFSEFGTITSCKVMRD-PS---GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 320 -~~~~-~~-------~~l~~~F~~~G~i~~v~i~~~-~~---g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
++++ ++ |+++..+++||.|.+|.+.++ .+ ..+.|..||+|++.++|++|+++|+|..|+++.+..+|
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 1111 11 567778889999999999887 32 34578899999999999999999999999999999998
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
....
T Consensus 489 ydeD 492 (500)
T KOG0120|consen 489 YDED 492 (500)
T ss_pred cCHH
Confidence 8754
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.63 E-value=1.8e-15 Score=134.32 Aligned_cols=81 Identities=33% Similarity=0.580 Sum_probs=76.2
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+||+.++++++|+++|++||.|.+++|+.|. +|+++|||||+|.+.++|.+|++.||+..|+|++|.|.|+.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 56789999999999999999999999999999998874 78899999999999999999999999999999999999987
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 113 ~~ 114 (144)
T PLN03134 113 DR 114 (144)
T ss_pred cC
Confidence 53
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.60 E-value=1.4e-14 Score=132.00 Aligned_cols=175 Identities=23% Similarity=0.409 Sum_probs=142.3
Q ss_pred ccceeccCCCCCCCHHHHHH----hhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEec
Q 007673 208 FNNVFVKNLDESTTDEDLKK----IFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGK 283 (593)
Q Consensus 208 ~~~l~V~nlp~~~te~~l~~----~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~ 283 (593)
+.++||.||...+..++|+. +|+.||.|.+|...+ +.+.+|.|||.|.+.+.|..|++.|+|..|.|+.+.+.+
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 44899999999999999888 999999999887764 457899999999999999999999999999999999999
Q ss_pred cccchHHHHHHhhhH---------H------h--hhhh---------------hhcccccceeeeccCCCCCCHHHHHHH
Q 007673 284 AQKKSEREQELKGQF---------E------Q--AMKE---------------TVDKFQGLNLYIKNLGDSIDDEKLKEL 331 (593)
Q Consensus 284 a~~~~~~~~~~~~~~---------~------~--~~~~---------------~~~~~~~~~l~V~nl~~~~~~~~l~~~ 331 (593)
|..++.........+ + . ..+. .....+...|++.|||.+++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 987654322211000 0 0 0000 112346678999999999999999999
Q ss_pred hhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceec-CeeeEEEecc
Q 007673 332 FSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQ 388 (593)
Q Consensus 332 F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~-~~~l~v~~~~ 388 (593)
|.+|.....++++... ++.|||+|.+...|..|...+.|..|- ...+.|.+++
T Consensus 167 f~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999999998763 568999999999999999999999886 7788887764
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.2e-14 Score=112.92 Aligned_cols=70 Identities=43% Similarity=0.742 Sum_probs=67.6
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 32 L~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
|||+|||+++|+++|+++|+.||.|..+++.++ .++++.|||||.|.+.++|++|++.+++..++|+.||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 7788999999999999999999999999999999986
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.9e-14 Score=110.84 Aligned_cols=70 Identities=47% Similarity=0.797 Sum_probs=67.5
Q ss_pred eeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeE
Q 007673 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (593)
Q Consensus 314 l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~ 383 (593)
|||+|||.++++++|+++|+.||.|..+.+..+..+..+++|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999988888999999999999999999999999999999885
No 62
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=142.88 Aligned_cols=357 Identities=17% Similarity=0.173 Sum_probs=246.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..+.+-+.+.+.+.++.+++++|... .|-++.+..+...+.-.|-+||.|....++.+|+. .|...+..|.+.|...-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 35667778999999999999999876 67777777777666668999999999999999998 57777788888775332
Q ss_pred CCC----------------------------C---------CCCCCCccEEEeCCCcccCHHHHHhhhccccceEE-EEE
Q 007673 108 RDP----------------------------S---------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILS-CKI 149 (593)
Q Consensus 108 ~~~----------------------------~---------~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~-~~i 149 (593)
.+. + ..+.....|+|..||..+++.++.++|...-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 110 0 11223557999999999999999999998888877 777
Q ss_pred eeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchhh-------------------hHHHHh------
Q 007673 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE-------------------RETVAI------ 204 (593)
Q Consensus 150 ~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~-------------------~~~~~~------ 204 (593)
...++++-++-|||.|..++.+..|...-+.++++.+.|+|....++.. ++....
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v 547 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAMMMEKNGEQGIKLQQSDKDQRETALDGPIPSV 547 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHHHHHHhHHHHHHHhhhhhHHHHHhhcCCccch
Confidence 7778999999999999999998888876667777788888865443211 000000
Q ss_pred ----------h-ccc---------------------------------------------------cceeccCCCCCCCH
Q 007673 205 ----------K-TKF---------------------------------------------------NNVFVKNLDESTTD 222 (593)
Q Consensus 205 ----------~-~~~---------------------------------------------------~~l~V~nlp~~~te 222 (593)
. ..+ .++.|.|+++.+..
T Consensus 548 ~~~~~~~~~~~~~~F~~~~rr~~~e~~~~~~~~n~~p~~~dN~~~~~~~~~v~~~n~p~~r~~~~~~~~~vnn~pF~m~~ 627 (944)
T KOG4307|consen 548 SMVPSKEQRSHEDDFDKKSRRSRWENTSPIRSPNRSPLRRDNRDRSRSRSPVRRRNSPRRREEHTRWCVQVNNVPFRMKD 627 (944)
T ss_pred hhhhhhhhhccCcccccchHHHHhhhcCCccCccccccccccCCcccccCccccCCCccccchhhhhhhcccCcceeecc
Confidence 0 000 02556777777777
Q ss_pred HHHHHhhccC------------CCe-----eEE---EEee------------------------CCCCCcceeEEEEeCC
Q 007673 223 EDLKKIFGEY------------GTI-----TSA---VVMR------------------------DGDGKSKCFGFVNFEN 258 (593)
Q Consensus 223 ~~l~~~F~~~------------G~v-----~~v---~i~~------------------------~~~g~~~g~afV~F~~ 258 (593)
+++.+.|+.- |.+ ..+ .++. ...-...|-.+++|.+
T Consensus 628 ~~~~~~~sekn~Pa~~~~~~~~gv~~~p~v~~~~~~~l~~~r~~~~g~l~tg~~lr~~~i~~~~~~~~~~~g~~~~e~~~ 707 (944)
T KOG4307|consen 628 EELLEWFSEKNRPAKLTRTFYDGVASDPWVAEFSSESLMKRRSFGIGTLCTGRTLRLRYIDNAKADEILKIGDVYGEGKR 707 (944)
T ss_pred hhhhhhhcccCCcccccccccCCCCCCcccccccccccccccCCCccccccCcccccchhhhhhhccccccccceeccCC
Confidence 7777766421 100 000 0000 0011234556889999
Q ss_pred HHHHHHHHHHHCCCccCCceEEEeccccchHH------------------------------------------------
Q 007673 259 ADDAAKAVEALNGKKFDDREWYVGKAQKKSER------------------------------------------------ 290 (593)
Q Consensus 259 ~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~------------------------------------------------ 290 (593)
....+.|+...+.+++.+..+.+..+......
T Consensus 708 ~~~ee~a~~~~~~~~an~~~~fn~p~~~~gs~~~~p~~p~p~~~gg~nG~~~p~pn~~NdGapg~g~~vp~~f~~gp~~~ 787 (944)
T KOG4307|consen 708 QMNEEAALQHEVAEKANPPSFFNAPAATRGSGPMPPLNPAPLPSGGQNGMNVPPPNGFNDGAPGRGGFVPRGFSQGPGMG 787 (944)
T ss_pred ccchhHHHHHHhhhhccCCCcccccccccccCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCcCCcCCccccCCCCCC
Confidence 99999998877776665544443333211000
Q ss_pred ----------------HHHHh----hhH---------------------------------------Hhhhhhhhccccc
Q 007673 291 ----------------EQELK----GQF---------------------------------------EQAMKETVDKFQG 311 (593)
Q Consensus 291 ----------------~~~~~----~~~---------------------------------------~~~~~~~~~~~~~ 311 (593)
...+. ..+ .....+.....-.
T Consensus 788 ~gp~g~gggP~~~qngP~sl~~~p~~~f~sn~p~~~gf~pg~rggpp~~g~gpg~~~g~~p~~~~~P~~~~~~~~~~pGp 867 (944)
T KOG4307|consen 788 RGPHGGGGGPNFYQNGPNSLNNGPQGQFRSNQPNDGGFRPGFRGGPPGRGGGPGGFQGGSPGDDSQPSQELMELIKSPGP 867 (944)
T ss_pred CCCCCCCCCccccccCCcccCCCCccccCCCCCCcCCcCCccCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhcCCCCC
Confidence 00000 000 0000011112223
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCe-eEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
+.|-+.|+|++++-+||.++|..|-.+ .+|.+.++++|...|-|.|-|++.++|.+|...++++.|..+.+++.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 378999999999999999999999654 567888888999999999999999999999999999999999998875
No 63
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.53 E-value=2.4e-12 Score=124.26 Aligned_cols=241 Identities=21% Similarity=0.269 Sum_probs=182.1
Q ss_pred CCCccEEEEeCCC--CCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccC-C-cEE
Q 007673 26 QFLTTSLYVGDLD--FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN-N-KSI 101 (593)
Q Consensus 26 ~~~~~sL~V~nLp--~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~-g-~~i 101 (593)
...+..|.+.=|. +.+|-+-|+.++...|+|..|.|++. ++ -.|.|+|++.+.|++|.+.||+..|- | .++
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 3345566666554 77999999999999999999999986 22 37999999999999999999999873 3 577
Q ss_pred EEeeccCCC----------------CC--------------------------C--------------------------
Q 007673 102 RIMYSHRDP----------------SI--------------------------R-------------------------- 113 (593)
Q Consensus 102 ~v~~s~~~~----------------~~--------------------------~-------------------------- 113 (593)
+|.|++.+. .. +
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~ 271 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDG 271 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccc
Confidence 777765210 00 0
Q ss_pred ------------CCCCccEEEeCCCc-ccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCC
Q 007673 114 ------------KSGTGNIFIKNLDK-SIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNG 180 (593)
Q Consensus 114 ------------~~~~~~lfV~nLp~-~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g 180 (593)
....+-++|.+|.. .++.+.|+++|-.||+|+.+++.+.+ .|-|.|+.-+....++|+..||+
T Consensus 272 ~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn 347 (494)
T KOG1456|consen 272 YRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNN 347 (494)
T ss_pred cccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhcc
Confidence 00122478999986 56789999999999999999999864 45799999999999999999999
Q ss_pred ceecCeeEEeccccchhh------------------------hHH-------HHhhccccceeccCCCCCCCHHHHHHhh
Q 007673 181 MLINDKQVFVGHFLRKQE------------------------RET-------VAIKTKFNNVFVKNLDESTTDEDLKKIF 229 (593)
Q Consensus 181 ~~~~g~~l~v~~~~~~~~------------------------~~~-------~~~~~~~~~l~V~nlp~~~te~~l~~~F 229 (593)
..+.|.+|.|........ |-. .......+.|..-|.|..++|+.|.++|
T Consensus 348 ~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~ 427 (494)
T KOG1456|consen 348 IPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGIC 427 (494)
T ss_pred CccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHh
Confidence 999998888854432110 000 0011234458888999999999999999
Q ss_pred ccCCC-eeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCC
Q 007673 230 GEYGT-ITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDD 276 (593)
Q Consensus 230 ~~~G~-v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~ 276 (593)
...+. -.++.+...++-+ ...+.++|++.++|..|+..+|...+.+
T Consensus 428 nek~v~~~svkvFp~kser-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 428 NEKDVPPTSVKVFPLKSER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred hhcCCCcceEEeecccccc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 87764 3455555544333 3368999999999999999999888754
No 64
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=5e-14 Score=128.87 Aligned_cols=84 Identities=27% Similarity=0.397 Sum_probs=80.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
...+++|.|.||+.+++|++|+++|.+||.|..|.+.+|+.||.++|||||.|.+.+||.+||+.||+.-++.--|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 007673 106 SHRD 109 (593)
Q Consensus 106 s~~~ 109 (593)
+...
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9753
No 65
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=6.5e-14 Score=122.32 Aligned_cols=171 Identities=19% Similarity=0.313 Sum_probs=132.3
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~ 286 (593)
....|||+|||.++.+.+|.++|-+||.|..|.+..... .-+||||+|++..+|..||..-+|..+++..|.|.++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 356799999999999999999999999999998876532 356999999999999999999999999999999999865
Q ss_pred chHHHHHHhhhHH--------hhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEE
Q 007673 287 KSEREQELKGQFE--------QAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVA 358 (593)
Q Consensus 287 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~ 358 (593)
........-.... .........-....|.|.+||.+-+..||+++..+-|.|....+.+| |.+.|.
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~ 156 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVE 156 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeee
Confidence 4311100000000 00000111223446999999999999999999999999999998887 378999
Q ss_pred eCCHHHHHHHHHHhCCceec--CeeeEEE
Q 007673 359 FSTPEEASRALAEMNGKMIV--SKPLYVA 385 (593)
Q Consensus 359 f~~~~~A~~A~~~~~~~~~~--~~~l~v~ 385 (593)
|...++-+-|+..|....+. |-..++.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~seGe~~yir 185 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFRSEGETAYIR 185 (241)
T ss_pred eeehhhHHHHHHhhccccccCcCcEeeEE
Confidence 99999999999999877664 4444443
No 66
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.9e-14 Score=132.74 Aligned_cols=148 Identities=23% Similarity=0.496 Sum_probs=127.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
..+|||+||+.+.+.+|.++|..||.|..|.+.. ||+||.|.+..||..|+..+|+..|.|..+.++|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4799999999999999999999999999998754 69999999999999999999999999988888887631
Q ss_pred ------CC-------CC-----CCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHH
Q 007673 110 ------PS-------IR-----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESA 171 (593)
Q Consensus 110 ------~~-------~~-----~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A 171 (593)
+. .+ ......+++.+++..+.+.+|.+.|..+|.+....+ ..+++||+|++.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 00 11 123556899999999999999999999998844433 577999999999999
Q ss_pred HHHHHHhCCceecCeeEEecc
Q 007673 172 QNAIDKLNGMLINDKQVFVGH 192 (593)
Q Consensus 172 ~~Al~~l~g~~~~g~~l~v~~ 192 (593)
..|++.+++..++++.|.+..
T Consensus 147 ~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 147 KRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred hhcchhccchhhcCceeeecc
Confidence 999999999999999998843
No 67
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.51 E-value=4.6e-13 Score=120.58 Aligned_cols=155 Identities=19% Similarity=0.303 Sum_probs=120.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEe-eCCCCCcccEEEEEecCHHHHHHHHHhcCCcccC---CcEE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCR-DLSTRRSLGYGYVNYANPADAARALDVLNFTPLN---NKSI 101 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~-d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~---g~~i 101 (593)
+..-+||||.+||.++.-.+|+.+|..|--.....+.. ++...-.+-+|||.|.+.++|..|+..||+..|+ +..+
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34579999999999999999999999985555554433 2222234469999999999999999999999884 7889
Q ss_pred EEeeccCCCCC------------------------C--------------------------------------------
Q 007673 102 RIMYSHRDPSI------------------------R-------------------------------------------- 113 (593)
Q Consensus 102 ~v~~s~~~~~~------------------------~-------------------------------------------- 113 (593)
+|.+++.++.. +
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 99876522100 0
Q ss_pred ----------------CCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHH
Q 007673 114 ----------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 177 (593)
Q Consensus 114 ----------------~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~ 177 (593)
.+...+|||.||..++++++|+.+|+.|-.....+|... . ....||+.|+..+.|..|+..
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~--g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-G--GMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-C--CcceEeecHHHHHHHHHHHHH
Confidence 001225899999999999999999999987776666542 2 234799999999999999999
Q ss_pred hCCcee
Q 007673 178 LNGMLI 183 (593)
Q Consensus 178 l~g~~~ 183 (593)
|+|..+
T Consensus 268 lqg~~~ 273 (284)
T KOG1457|consen 268 LQGNLL 273 (284)
T ss_pred hhccee
Confidence 998766
No 68
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.50 E-value=5.6e-13 Score=127.86 Aligned_cols=180 Identities=19% Similarity=0.294 Sum_probs=138.9
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCee--------EEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCce
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTIT--------SAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDRE 278 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~--------~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~ 278 (593)
.++.|||+|||.++|.+++.++|+++|.|. .|.+.+++.|+.+|-|.+.|...++..-|+.-|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456799999999999999999999999873 578899999999999999999999999999999999999999
Q ss_pred EEEeccccchH--------------HHHHHhhhHHhh------hhhhhcccccceeeeccCC----CCCC-------HHH
Q 007673 279 WYVGKAQKKSE--------------REQELKGQFEQA------MKETVDKFQGLNLYIKNLG----DSID-------DEK 327 (593)
Q Consensus 279 l~v~~a~~~~~--------------~~~~~~~~~~~~------~~~~~~~~~~~~l~V~nl~----~~~~-------~~~ 327 (593)
+.|.+|.-... ....+....... .......-..++|.++|+= ...+ .++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99999852211 000000000000 0011112245678888872 1122 367
Q ss_pred HHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 328 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
|++-+++||.|.+|.|... .+.|.+-|.|.+.++|..||+.|+|+.|+||.|..++...
T Consensus 293 l~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 8888999999999987643 2467899999999999999999999999999998887653
No 69
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.6e-14 Score=115.95 Aligned_cols=81 Identities=31% Similarity=0.552 Sum_probs=77.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..++|||||||+.-++|++|+++|+.+|.|..|..=.|+.+...-|||||+|.+.++|+.|+..++++.++.++|+|-|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999999899999999999999999999999999999999999999999986
Q ss_pred c
Q 007673 107 H 107 (593)
Q Consensus 107 ~ 107 (593)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 5
No 70
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.48 E-value=1.6e-13 Score=106.64 Aligned_cols=70 Identities=30% Similarity=0.607 Sum_probs=65.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 32 L~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
|||+|||+++++++|+++|+.+|.|..|++.+++. +.++|+|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 89999999999999999999999998999999885
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=3.8e-14 Score=130.78 Aligned_cols=167 Identities=28% Similarity=0.449 Sum_probs=131.8
Q ss_pred ceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchH
Q 007673 210 NVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSE 289 (593)
Q Consensus 210 ~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~ 289 (593)
.+||++|++.+.+.+|..+|..||.+..+.+. .||+||.|++..+|..|+..++++.+.+..+.|.++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 58999999999999999999999999998876 35999999999999999999999999998888888764322
Q ss_pred HHHHHh-hhHHh-hhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHH
Q 007673 290 REQELK-GQFEQ-AMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 367 (593)
Q Consensus 290 ~~~~~~-~~~~~-~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 367 (593)
....-. ..... ........-..+.+.|.|+..+++..+|.++|..+|.+....+ .++++||+|++.++|.+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhh
Confidence 110000 00000 0011111234567999999999999999999999999965544 25699999999999999
Q ss_pred HHHHhCCceecCeeeEEEeccch
Q 007673 368 ALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 368 A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|+..++|..+.++.|.+......
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~~d 171 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNSRD 171 (216)
T ss_pred cchhccchhhcCceeeecccCcc
Confidence 99999999999999999555443
No 72
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.46 E-value=1.7e-12 Score=124.63 Aligned_cols=166 Identities=20% Similarity=0.359 Sum_probs=136.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeE--------EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccC
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVL--------SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN 97 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~--------~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~ 97 (593)
..-+++|||.|||.++|.+++.++|+.||-|. .|++.++.. |+.+|=|.+.|...++..-|+..|+...|+
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 44578899999999999999999999999774 478888876 899999999999999999999999999999
Q ss_pred CcEEEEeeccC------------------------------------CCCCCCCCCccEEEeCCCccc----C-------
Q 007673 98 NKSIRIMYSHR------------------------------------DPSIRKSGTGNIFIKNLDKSI----D------- 130 (593)
Q Consensus 98 g~~i~v~~s~~------------------------------------~~~~~~~~~~~lfV~nLp~~~----t------- 130 (593)
|+.|+|..++- +...+....++|.++|+=... +
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 99999986641 011223456678888883221 2
Q ss_pred HHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccc
Q 007673 131 HKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195 (593)
Q Consensus 131 ~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~ 195 (593)
.++|.+-.+.||.|.++.|... ...|-+-|.|.+.++|..|++.|+|..+.||+|.......
T Consensus 290 kedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 4667777899999999988743 4678899999999999999999999999999998765543
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.46 E-value=3.3e-13 Score=104.90 Aligned_cols=70 Identities=40% Similarity=0.701 Sum_probs=65.2
Q ss_pred eeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeE
Q 007673 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (593)
Q Consensus 314 l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~ 383 (593)
|||+|||.++++++|+++|+.||.|..+++..+.+|.++++|||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987789999999999999999999999999999999874
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=8.4e-13 Score=132.29 Aligned_cols=147 Identities=27% Similarity=0.498 Sum_probs=117.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc-
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH- 107 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~- 107 (593)
.++|||+|||.++|+++|+++|..||.|..|++..|+.+++++|||||.|.+.++|..|++.+++..|.|++|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999853
Q ss_pred ---CCCC------------------CCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCC-ceeEEEEEE
Q 007673 108 ---RDPS------------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQ-SKGFGFVQF 165 (593)
Q Consensus 108 ---~~~~------------------~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~-s~g~afV~F 165 (593)
.... ........+++.+++..++..++...|..+|.+....+.....+. .....++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111 112234568899999999999999999999999776666553222 333333444
Q ss_pred cCHHHHHHHH
Q 007673 166 ENKESAQNAI 175 (593)
Q Consensus 166 ~~~e~A~~Al 175 (593)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 4444333333
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.44 E-value=9.5e-13 Score=118.61 Aligned_cols=169 Identities=21% Similarity=0.365 Sum_probs=124.2
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCC--CCcceeEEEEeCCHHHHHHHHHHHCCCccC---CceEEE
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGD--GKSKCFGFVNFENADDAAKAVEALNGKKFD---DREWYV 281 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~--g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~---~~~l~v 281 (593)
.-++|||.+||.++...||..+|..|---+.+.+..... ...+.++|++|.+..+|..|+..|||..|+ +..|.+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 357899999999999999999999987666666655432 345679999999999999999999999985 566777
Q ss_pred eccccchHHHHHH--------------------h-hhHH-----------------------------------------
Q 007673 282 GKAQKKSEREQEL--------------------K-GQFE----------------------------------------- 299 (593)
Q Consensus 282 ~~a~~~~~~~~~~--------------------~-~~~~----------------------------------------- 299 (593)
..+.....+.... + ....
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 7665432211000 0 0000
Q ss_pred ---hhhhhh---hcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 007673 300 ---QAMKET---VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373 (593)
Q Consensus 300 ---~~~~~~---~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 373 (593)
...+.. ....-+.+|||.||..+++|++|+.+|+.|-....++|... .| -..||+.|++.+.|..|+..|.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~-~g--~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR-GG--MPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-CC--cceEeecHHHHHHHHHHHHHhh
Confidence 000000 00112457999999999999999999999988777776543 33 4589999999999999999999
Q ss_pred Cceec
Q 007673 374 GKMIV 378 (593)
Q Consensus 374 ~~~~~ 378 (593)
|..|.
T Consensus 270 g~~~s 274 (284)
T KOG1457|consen 270 GNLLS 274 (284)
T ss_pred cceec
Confidence 98774
No 76
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=5.5e-13 Score=121.82 Aligned_cols=79 Identities=29% Similarity=0.461 Sum_probs=71.1
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
.-++|||++|+|++..|+|+++|++||+|++..|+.|. .|+|||||||+|.+.+.|.+|++.- +-.|+||+..+.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhh
Confidence 44689999999999999999999999999999998885 7999999999999999999999854 458899999998875
Q ss_pred c
Q 007673 389 R 389 (593)
Q Consensus 389 ~ 389 (593)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 3
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.1e-13 Score=129.76 Aligned_cols=80 Identities=29% Similarity=0.532 Sum_probs=75.5
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
....|+|.|||++.-|-||+.+|.+||.|.+|.|+.++.| |||||||+|++.+||.+|-++|||..+.||+|.|..+..
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4457999999999999999999999999999999999887 899999999999999999999999999999999998875
Q ss_pred h
Q 007673 390 K 390 (593)
Q Consensus 390 ~ 390 (593)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 78
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.1e-13 Score=123.74 Aligned_cols=82 Identities=33% Similarity=0.541 Sum_probs=77.7
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
.+.++|.|.||+.+.++++|+++|.+||.|.++.|.+| .+|.++|||||.|.+.++|.+||+.|||+-++.--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36778999999999999999999999999999999888 48999999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 79
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=2.4e-13 Score=124.09 Aligned_cols=79 Identities=27% Similarity=0.458 Sum_probs=73.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
.-+.||||+|+|++..+.|++.|++||.|++..|+.|+.|++|+||+||+|.+.+.|.+|++.-| -.|+||+..|..+.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 45899999999999999999999999999999999999999999999999999999999999644 67899998887654
No 80
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.8e-13 Score=116.99 Aligned_cols=78 Identities=32% Similarity=0.514 Sum_probs=72.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..+.||||||+..+++.||..+|..||+|.+|+|-+. .-|||||+|++..||+.|+..|++..|.|..|+|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4789999999999999999999999999999999884 44899999999999999999999999999999999987
Q ss_pred CCC
Q 007673 108 RDP 110 (593)
Q Consensus 108 ~~~ 110 (593)
-.+
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 544
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.42 E-value=6.6e-13 Score=125.91 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=71.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~ 108 (593)
.++|||+|||+++||++|+++|+.||.|.+|++.+|.. ++|||||+|.+.++|+.||. ||+..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999864 46899999999999999996 999999999999998764
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.40 E-value=1.2e-12 Score=124.18 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=69.5
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
.++|||+||++.+++++|+++|+.||.|.+|+|+.+.. ++|||||+|.+.++|..|+. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999998843 57999999999999999995 99999999999999754
No 83
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=4.1e-14 Score=123.40 Aligned_cols=79 Identities=25% Similarity=0.501 Sum_probs=76.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
.++-|||||||.+.||-+|.-+|++||.|++|.++||+.||+|+||||+.|++..+..-|++.||+..|.||.|||-..
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999999754
No 84
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.39 E-value=1e-11 Score=130.58 Aligned_cols=79 Identities=23% Similarity=0.458 Sum_probs=73.2
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
-+++|||++|+..+++.||..+|+.||.|.+|.++.. +|||||++...++|.+|+.+|++..+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 3678999999999999999999999999999998775 89999999999999999999999999999999999976
Q ss_pred hHHH
Q 007673 390 KEER 393 (593)
Q Consensus 390 ~~~r 393 (593)
+..+
T Consensus 495 ~G~k 498 (894)
T KOG0132|consen 495 KGPK 498 (894)
T ss_pred CCcc
Confidence 5443
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=5.8e-13 Score=118.60 Aligned_cols=81 Identities=30% Similarity=0.466 Sum_probs=77.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
.-+.+|.|-||-+-++-++|+.+|++||.|.+|.|.+|..|+.+.|||||.|....||++|++.|++..++|+.|+|.++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred c
Q 007673 107 H 107 (593)
Q Consensus 107 ~ 107 (593)
.
T Consensus 91 r 91 (256)
T KOG4207|consen 91 R 91 (256)
T ss_pred h
Confidence 5
No 86
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=2.5e-12 Score=101.78 Aligned_cols=85 Identities=26% Similarity=0.464 Sum_probs=76.3
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
.-.++..++-|||+|||.++|.++++++|.+||+|..|+|=..+.| +|.|||.|++..||.+|++.|++..+.++.+
T Consensus 11 ~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl 87 (124)
T KOG0114|consen 11 IRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYL 87 (124)
T ss_pred CCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceE
Confidence 4456677899999999999999999999999999999999766554 5899999999999999999999999999999
Q ss_pred EEeeccCC
Q 007673 102 RIMYSHRD 109 (593)
Q Consensus 102 ~v~~s~~~ 109 (593)
.|.+.+..
T Consensus 88 ~vlyyq~~ 95 (124)
T KOG0114|consen 88 VVLYYQPE 95 (124)
T ss_pred EEEecCHH
Confidence 99877643
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1.5e-12 Score=113.33 Aligned_cols=78 Identities=28% Similarity=0.517 Sum_probs=72.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...+.|||+||+..+++.||..+|..||.|.+|.|-.. ..|||||+|+++.||..|+..|+|+.|+|..|.|++..
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 35678999999999999999999999999999999886 46799999999999999999999999999999999886
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 53
No 88
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=9.6e-15 Score=154.93 Aligned_cols=323 Identities=18% Similarity=0.179 Sum_probs=239.6
Q ss_pred CccEEEEeCCCCCCCHHHHH-HHHhccCCeEE-EEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 28 LTTSLYVGDLDFNVTDSQLY-DLFSQVGQVLS-VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~-~~F~~~G~V~~-i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
..++++|-|-+..-+...|. .+|+-++.+.. ++. ...++.+.+||+.-.+.+++..++..+........++.+.-
T Consensus 478 md~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~---~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~ 554 (881)
T KOG0128|consen 478 MDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDG---PSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFD 554 (881)
T ss_pred hhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCc---hhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHh
Confidence 45678888888888888888 77776653322 211 12233566899999999999999998876555444432221
Q ss_pred ccCCCC-----CCCCCCccEEEeCCCcccCHH-HHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHh
Q 007673 106 SHRDPS-----IRKSGTGNIFIKNLDKSIDHK-ALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178 (593)
Q Consensus 106 s~~~~~-----~~~~~~~~lfV~nLp~~~t~~-~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l 178 (593)
+..... ...-......+.++.+....+ ..+..|..+|.|..+++... ..-....++++.+....++..|.. .
T Consensus 555 ~~~~~~~pr~~~~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-p 633 (881)
T KOG0128|consen 555 LCPEKVLPRVYEAPLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-P 633 (881)
T ss_pred hhHHhhcchhhhhhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-c
Confidence 111000 011123345667777666555 56788999999999988773 222233378899999999998884 4
Q ss_pred CCceecCeeEEeccccchhhhHHHHhh----ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEe-eCCCCCcceeEE
Q 007673 179 NGMLINDKQVFVGHFLRKQERETVAIK----TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVM-RDGDGKSKCFGF 253 (593)
Q Consensus 179 ~g~~~~g~~l~v~~~~~~~~~~~~~~~----~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~-~~~~g~~~g~af 253 (593)
.+..+.++...+............... ....++|++||+..+.+++|...|..+|.+..+.+. ....+..+|+||
T Consensus 634 a~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y 713 (881)
T KOG0128|consen 634 AGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAY 713 (881)
T ss_pred cccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccccccee
Confidence 677777788777766655533222111 223569999999999999999999999998877766 445678899999
Q ss_pred EEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhh
Q 007673 254 VNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 333 (593)
Q Consensus 254 V~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~ 333 (593)
+.|...+++.+|+....++.++ ...++|.|.|...|.++|+.+|+
T Consensus 714 ~~F~~~~~~~aaV~f~d~~~~g-----------------------------------K~~v~i~g~pf~gt~e~~k~l~~ 758 (881)
T KOG0128|consen 714 VEFLKPEHAGAAVAFRDSCFFG-----------------------------------KISVAISGPPFQGTKEELKSLAS 758 (881)
T ss_pred eEeecCCchhhhhhhhhhhhhh-----------------------------------hhhhheeCCCCCCchHHHHhhcc
Confidence 9999999999999744333332 11599999999999999999999
Q ss_pred cCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 334 EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 334 ~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
.+|++++++++...+|+.+|.+||.|.+..+|.++.....+..+..+-+.|....+
T Consensus 759 ~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 759 KTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred ccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 99999999999989999999999999999999999999888888888777776654
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.7e-12 Score=119.92 Aligned_cols=83 Identities=22% Similarity=0.388 Sum_probs=78.4
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
+...+-+||||+-|+++++|..|++.|+.||+|+.|++++|+.|++|+|||||+|.+..+-..|.+..++..|+|+.|-|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred eec
Q 007673 104 MYS 106 (593)
Q Consensus 104 ~~s 106 (593)
-+.
T Consensus 176 DvE 178 (335)
T KOG0113|consen 176 DVE 178 (335)
T ss_pred Eec
Confidence 653
No 90
>PLN03213 repressor of silencing 3; Provisional
Probab=99.33 E-value=6.4e-12 Score=125.34 Aligned_cols=82 Identities=23% Similarity=0.453 Sum_probs=74.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCH--HHHHHHHHHhCCceecCeeeEEEec
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP--EEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~--~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
.+.+|||+||++.+++++|+.+|+.||.|.+|.|++. +| ||||||+|.+. .++.+||..|||..+.|+.|+|..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4568999999999999999999999999999999954 55 99999999987 7899999999999999999999999
Q ss_pred cchHHHH
Q 007673 388 QRKEERR 394 (593)
Q Consensus 388 ~~~~~r~ 394 (593)
++.-..|
T Consensus 86 KP~YLeR 92 (759)
T PLN03213 86 KEHYLAR 92 (759)
T ss_pred cHHHHHH
Confidence 9865443
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=2.7e-12 Score=106.52 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=77.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..=.|+|.+++..+||++|.+.|..||+|++|.+-.|.+|+-.+|||+|+|.+.++|+.|++.+|+..+.|..|.|-|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC
Q 007673 108 RD 109 (593)
Q Consensus 108 ~~ 109 (593)
-.
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 43
No 92
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=9e-12 Score=98.62 Aligned_cols=81 Identities=26% Similarity=0.429 Sum_probs=73.3
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
.++-|||+|||.++|.|+..++|.+||.|..|+|-.... .+|.|||.|++..+|.+|+..|+|..+.++.|.|-+.+.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 455699999999999999999999999999999876533 589999999999999999999999999999999999987
Q ss_pred hHH
Q 007673 390 KEE 392 (593)
Q Consensus 390 ~~~ 392 (593)
...
T Consensus 95 ~~~ 97 (124)
T KOG0114|consen 95 EDA 97 (124)
T ss_pred HHH
Confidence 543
No 93
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=7.8e-12 Score=97.03 Aligned_cols=71 Identities=35% Similarity=0.678 Sum_probs=67.1
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
+|||+|||.++++++|+++|+.||.|..+++.++. +.++|+|||+|.+.++|.+|++.+++..+.|+.++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999999887 678899999999999999999999999999999876
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=6.8e-12 Score=117.00 Aligned_cols=76 Identities=20% Similarity=0.237 Sum_probs=69.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
...+|||+||++.+||++|+++|+.||+|.+|++.+|. ++.|+|||+|.+.++|+.|+. |++..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 35799999999999999999999999999999999984 445899999999999999997 99999999999997543
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=1.1e-11 Score=96.19 Aligned_cols=72 Identities=43% Similarity=0.746 Sum_probs=67.7
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
+|||+|||..+++++|+++|+.||.|..+.+..+. +.++|+|||+|.+.++|.+|++.++|..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998877 7789999999999999999999999999999998873
No 96
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=4.8e-12 Score=120.62 Aligned_cols=103 Identities=27% Similarity=0.447 Sum_probs=88.8
Q ss_pred cCCcccCCcEEEEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHH
Q 007673 91 LNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 170 (593)
Q Consensus 91 ln~~~i~g~~i~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~ 170 (593)
-++....|.++....+.+ +..+...++|.|.|||....+.||+.+|.+||.|++|+|+.++-| |||||||+|++.+|
T Consensus 72 ~~~~~t~g~~~~~~~st~--s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~d 148 (376)
T KOG0125|consen 72 SNGAPTDGQPIQTQPSTN--SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPAD 148 (376)
T ss_pred cCCCCCCCCccccCCCCc--CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhh
Confidence 455566777776654433 334566789999999999999999999999999999999999777 89999999999999
Q ss_pred HHHHHHHhCCceecCeeEEeccccch
Q 007673 171 AQNAIDKLNGMLINDKQVFVGHFLRK 196 (593)
Q Consensus 171 A~~Al~~l~g~~~~g~~l~v~~~~~~ 196 (593)
|++|.++|||..+.||+|.|.....+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999887655
No 97
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.30 E-value=2.7e-12 Score=114.40 Aligned_cols=79 Identities=27% Similarity=0.457 Sum_probs=74.7
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|.|.||.+.++.++|+.+|++||.|-+|.|..|. ++.++|||||.|.+..+|+.|++.|+|.+++|+.|.|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45689999999999999999999999999999999985 67899999999999999999999999999999999999885
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.30 E-value=7.7e-12 Score=124.79 Aligned_cols=115 Identities=17% Similarity=0.236 Sum_probs=86.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCH--HHHHHHHHhcCCcccCCcEEEEee
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANP--ADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~--e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
...+||||||++++++++|..+|+.||.|.+|.|+|+ ++ +|||||+|.+. +++.+||+.||+..++|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4579999999999999999999999999999999965 55 79999999987 789999999999999999999987
Q ss_pred ccCCC----------CCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEE
Q 007673 106 SHRDP----------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKI 149 (593)
Q Consensus 106 s~~~~----------~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i 149 (593)
++..- .... ....+.+-. .......|+-+|-..+.|.++.+
T Consensus 85 AKP~YLeRLkrEReea~s~-~~~~~kl~k--~~~e~~qLnifFPrLrKvKslPf 135 (759)
T PLN03213 85 AKEHYLARLKREWEAASST-SDNTIKAPS--DSPPATHLNIFFPRLRKVKAMPL 135 (759)
T ss_pred ccHHHHHHHHHHHHHhhcc-ccccccccc--cCCccceeeEecccccccccccc
Confidence 75321 0000 111111111 12345667777777777765443
No 99
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=1.1e-11 Score=115.56 Aligned_cols=75 Identities=20% Similarity=0.388 Sum_probs=69.6
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|+++ +..++||||+|.+.++|..|+. |+|..|.+++|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 4679999999999999999999999999999999988 5667899999999999999995 9999999999999844
No 100
>smart00360 RRM RNA recognition motif.
Probab=99.29 E-value=1.3e-11 Score=95.45 Aligned_cols=70 Identities=37% Similarity=0.683 Sum_probs=66.9
Q ss_pred EeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 34 VGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 34 V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
|+|||.++++++|+++|+.||.|..+++.++..+++++|||||+|.+.++|.+|++.+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999999888899999999999999999999999999999999887
No 101
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=5.3e-13 Score=116.52 Aligned_cols=78 Identities=24% Similarity=0.471 Sum_probs=73.0
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
.+.-|||+|||+++||.||-.+|++||+|+.|.+++|. +|+|+||||++|++..+.--|+..|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34579999999999999999999999999999999995 8999999999999999999999999999999999999743
No 102
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=1e-11 Score=127.79 Aligned_cols=81 Identities=31% Similarity=0.615 Sum_probs=78.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
+++||||+|++++|++|.++|+..|+|.++++..|+.||+++||||++|.+.++|++|++.||+..+.|++|+|.|...+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred C
Q 007673 110 P 110 (593)
Q Consensus 110 ~ 110 (593)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 103
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.26 E-value=9.3e-11 Score=123.51 Aligned_cols=110 Identities=21% Similarity=0.343 Sum_probs=88.5
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
..+++|||++|+..+++.+|.++|+.||.|.+|.++.. +++|||+..+..+|.+|+..|+...+.++.+.+.|+.
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 34678999999999999999999999999999999865 8899999999999999999999999999999999998
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhh
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS 333 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~ 333 (593)
.+.-+. +++..+ ...+=|.-||++--.++|+.+++
T Consensus 494 g~G~ks-e~k~~w------------D~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 494 GKGPKS-EYKDYW------------DVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred cCCcch-hhhhhh------------hcccCeeEeehHhcCHHHHHhhh
Confidence 776655 333222 22355666776543344555543
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.25 E-value=1.8e-11 Score=115.40 Aligned_cols=83 Identities=23% Similarity=0.435 Sum_probs=77.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
..+-++|||..|+.+++|.+|+..|+.||.|+.|+|+.| .+|+++|||||+|.+..+-..|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 346679999999999999999999999999999999999 5899999999999999999999999999999999999998
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
-...
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7543
No 105
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=3.5e-11 Score=120.51 Aligned_cols=164 Identities=32% Similarity=0.472 Sum_probs=123.3
Q ss_pred ccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecccc
Q 007673 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (593)
Q Consensus 208 ~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~ 286 (593)
..+|||+||+..+++++|.++|..||.|..+.+..+. .+.++|||||.|.+.++|..|++.+++..+.|+.+.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5889999999999999999999999999999999994 799999999999999999999999999999999999999653
Q ss_pred ----chHHHH--HHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCC-CccEEEEEe
Q 007673 287 ----KSEREQ--ELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI-SKGSGFVAF 359 (593)
Q Consensus 287 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~-~~g~afV~f 359 (593)
+..... .....................+++.+++..++..++...|..+|.+....+.....+. ...+.++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 211110 0000000111122334467789999999999999999999999999777666554332 333444555
Q ss_pred CCHHHHHHHHHH
Q 007673 360 STPEEASRALAE 371 (593)
Q Consensus 360 ~~~~~A~~A~~~ 371 (593)
.....+......
T Consensus 275 ~~~~~~~~~~~~ 286 (306)
T COG0724 275 EASKDALESNSR 286 (306)
T ss_pred hHHHhhhhhhcc
Confidence 555545444443
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.9e-12 Score=114.29 Aligned_cols=82 Identities=29% Similarity=0.512 Sum_probs=77.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
+.++|||++|.++++|.-|...|-+||.|.+|.+..| .+++.||||||+|.-.+||..||..||+..+.||.|+|.+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4568999999999999999999999999999999988 478899999999999999999999999999999999999998
Q ss_pred chH
Q 007673 389 RKE 391 (593)
Q Consensus 389 ~~~ 391 (593)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.24 E-value=5e-11 Score=92.95 Aligned_cols=74 Identities=39% Similarity=0.722 Sum_probs=69.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
+|+|+|||+++++++|+++|+.+|.|..+.+..+..+ .+.|+|||.|.+.++|..|++.+++..++|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988765 6789999999999999999999999999999998864
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=4.3e-11 Score=92.44 Aligned_cols=70 Identities=44% Similarity=0.763 Sum_probs=65.2
Q ss_pred eccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 316 IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 316 V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
|+|||..+++++|+++|+.||.|..+.+..+. ++.++|+|||+|.+.++|.+|++.+++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999998876 47889999999999999999999999999999998873
No 109
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1.8e-11 Score=100.76 Aligned_cols=82 Identities=23% Similarity=0.337 Sum_probs=73.9
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
.+++|||+||...++||.|.++|+..|.|..|.+-.|. +-+.=|||||+|.+.++|..|++-++|..++.++|.+.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 57899999999999999999999999999999876664 34467899999999999999999999999999999999886
Q ss_pred chH
Q 007673 389 RKE 391 (593)
Q Consensus 389 ~~~ 391 (593)
.-.
T Consensus 115 GF~ 117 (153)
T KOG0121|consen 115 GFV 117 (153)
T ss_pred cch
Confidence 543
No 110
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=8.6e-11 Score=91.61 Aligned_cols=74 Identities=41% Similarity=0.719 Sum_probs=69.8
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
+|+|+|||..+++++|+++|+.||.|..+.+..+..+..+|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887777899999999999999999999999999999999874
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=8.5e-11 Score=86.75 Aligned_cols=56 Identities=36% Similarity=0.711 Sum_probs=51.4
Q ss_pred HHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 328 LKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 328 l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
|+++|++||.|.++.+..+. +++|||+|.+.++|.+|++.|||..++|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998764 589999999999999999999999999999999986
No 112
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=5.3e-11 Score=121.69 Aligned_cols=153 Identities=22% Similarity=0.247 Sum_probs=107.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
.-..++|+|-|||.++++++|+++|+.||.|..|+-.+ ...|.+||+|.+..+|++|+++|+...+.|+.|+.-.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 44679999999999999999999999999999976644 4558999999999999999999999999999887322
Q ss_pred ccCCC--------------------CCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEE
Q 007673 106 SHRDP--------------------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQF 165 (593)
Q Consensus 106 s~~~~--------------------~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F 165 (593)
.-+.. ..-....+.+|+- |++..+..-+...++.+|.+.. .. ++.-+..-|+.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~----~~~~~hq~~~~~ 220 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE----TPLLNHQRFVEF 220 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc----ccchhhhhhhhh
Confidence 11110 0001112334444 8888888667777777876654 21 222222557777
Q ss_pred cCHHHHHHHHHHhCCceecCeeEEe
Q 007673 166 ENKESAQNAIDKLNGMLINDKQVFV 190 (593)
Q Consensus 166 ~~~e~A~~Al~~l~g~~~~g~~l~v 190 (593)
.+..++..+.... |+.+.+.....
T Consensus 221 ~~~~s~a~~~~~~-G~~~s~~~~v~ 244 (549)
T KOG4660|consen 221 ADNRSYAFSEPRG-GFLISNSSGVI 244 (549)
T ss_pred ccccchhhcccCC-ceecCCCCceE
Confidence 7777775555433 66666655433
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.17 E-value=6.7e-11 Score=121.88 Aligned_cols=83 Identities=28% Similarity=0.486 Sum_probs=78.2
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
+++||+|+|+++++++|.++|+..|.|.+++++.| ++|+++||||++|.+.++|.+|++.|||..++|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999988 58999999999999999999999999999999999999999876
Q ss_pred HHHH
Q 007673 391 EERR 394 (593)
Q Consensus 391 ~~r~ 394 (593)
..+.
T Consensus 99 ~~~~ 102 (435)
T KOG0108|consen 99 KNAE 102 (435)
T ss_pred chhH
Confidence 5443
No 114
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.2e-11 Score=109.47 Aligned_cols=83 Identities=28% Similarity=0.498 Sum_probs=79.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
...++||||+|-.+++|.-|...|-.||.|..|.+..|..+++.+|||||+|.-.|||..||+.||..++-||.|||.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 007673 107 HRD 109 (593)
Q Consensus 107 ~~~ 109 (593)
...
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 764
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.14 E-value=1.3e-10 Score=85.73 Aligned_cols=56 Identities=30% Similarity=0.688 Sum_probs=51.4
Q ss_pred HHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 46 LYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 46 L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
|+++|++||.|.+|++.++. .|+|||+|.+.++|.+|++.||+..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998764 479999999999999999999999999999999986
No 116
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.13 E-value=1.7e-10 Score=112.04 Aligned_cols=162 Identities=20% Similarity=0.292 Sum_probs=123.0
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQV----GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~----G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.-.|.+++||.++++.++.++|..- |-+..|.+++. ..++.+|-|||.|..+++|..||.+ |...+.-|.|.+.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4578899999999999999999643 23445555553 3578899999999999999999984 4344555555443
Q ss_pred eccC--------------------CC---------CCCCCCCccEEEeCCCcccCHHHHHhhhccccc---eEEEEEeeC
Q 007673 105 YSHR--------------------DP---------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN---ILSCKIATD 152 (593)
Q Consensus 105 ~s~~--------------------~~---------~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~---i~~~~i~~~ 152 (593)
.|.. .+ ..+.....+|.+++||.+.+.++|.++|..|.. ...+.+..+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 3210 00 111223668999999999999999999988762 234777788
Q ss_pred CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEecc
Q 007673 153 GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGH 192 (593)
Q Consensus 153 ~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~ 192 (593)
..|...|-|||+|.+.++|..|..+.+++..+.+.|.|-.
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 8999999999999999999999999888877777777644
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=99.13 E-value=2.2e-10 Score=88.76 Aligned_cols=61 Identities=25% Similarity=0.525 Sum_probs=53.8
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeeC-CC--CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 325 DEKLKELFS----EFGTITSCK-VMRD-PS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 325 ~~~l~~~F~----~~G~i~~v~-i~~~-~~--g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
+++|+++|+ .||.|.++. +..+ .+ |.++|||||.|.+.++|.+|++.|||+.+.|+.|.++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578899998 999999995 5444 34 8899999999999999999999999999999999763
No 118
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.2e-10 Score=96.73 Aligned_cols=82 Identities=22% Similarity=0.453 Sum_probs=76.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
..+.-|||.++....++++|.+.|..||+|+.+.+-.| .+|..+|||+|+|.+.++|++|+..+||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35678999999999999999999999999999999777 57999999999999999999999999999999999999998
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
-.+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 544
No 119
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=3e-10 Score=87.96 Aligned_cols=61 Identities=25% Similarity=0.355 Sum_probs=55.9
Q ss_pred HHHHHHHHh----ccCCeEEEE-EEeeCCC--CCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 43 DSQLYDLFS----QVGQVLSVR-VCRDLST--RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 43 e~~L~~~F~----~~G~V~~i~-v~~d~~t--~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
+++|+++|+ .||.|.+|. |..++.+ ++++|||||.|.+.++|.+|+..||+..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999996 7777766 899999999999999999999999999999999976
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=2.7e-11 Score=109.04 Aligned_cols=151 Identities=24% Similarity=0.361 Sum_probs=123.7
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.++..+||||+|+-..++|+.|.|+|-+.|+|..|.|..++.. +.+ ||||+|.++-...-|++-+|+..+.++++.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 4567899999999999999999999999999999999887654 343 99999999999999999999999999999886
Q ss_pred eccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceec
Q 007673 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184 (593)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~ 184 (593)
+-.-..- .-|...++++.+++.|+..|.+..+++..+.+|.++.++|+.+-..-..-.++....++...
T Consensus 83 ~r~G~sh-----------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 83 LRCGNSH-----------APLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred cccCCCc-----------chhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 4321100 12667789999999999999999999999988999999999987777777777665555443
Q ss_pred CeeE
Q 007673 185 DKQV 188 (593)
Q Consensus 185 g~~l 188 (593)
-+++
T Consensus 152 ~~~~ 155 (267)
T KOG4454|consen 152 QKKV 155 (267)
T ss_pred CCCc
Confidence 3333
No 121
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.9e-09 Score=108.24 Aligned_cols=152 Identities=22% Similarity=0.336 Sum_probs=117.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCC--CCccc---EEEEEecCHHHHHHHHHhcCCcc-----
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST--RRSLG---YGYVNYANPADAARALDVLNFTP----- 95 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t--~~s~g---~AfV~F~s~e~A~~Al~~ln~~~----- 95 (593)
..-++.||||+||++++|+.|...|..||.+.-=+-.+.... -..+| |+|+.|+++.....-+..+....
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 345789999999999999999999999998743333222111 13445 99999999999988887765311
Q ss_pred ------cCCcEEEEe-ecc------CCCCCCCCCCccEEEeCCCcccCHHHHHhhhc-cccceEEEEEeeC-CCCCceeE
Q 007673 96 ------LNNKSIRIM-YSH------RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFS-SFGNILSCKIATD-GSGQSKGF 160 (593)
Q Consensus 96 ------i~g~~i~v~-~s~------~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~-~~G~i~~~~i~~~-~~g~s~g~ 160 (593)
++.+.+.|. |-- .+.+..-....+|||++||.-++.++|..+|+ -||.|.-+-|-.| +-+-.+|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 233434443 221 12334455678999999999999999999998 8999999999999 77889999
Q ss_pred EEEEEcCHHHHHHHHHH
Q 007673 161 GFVQFENKESAQNAIDK 177 (593)
Q Consensus 161 afV~F~~~e~A~~Al~~ 177 (593)
|-|.|.+..+-.+||..
T Consensus 416 GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceeeecccHHHHHHHhh
Confidence 99999999999999974
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=3e-11 Score=128.80 Aligned_cols=232 Identities=18% Similarity=0.144 Sum_probs=184.0
Q ss_pred CccEEEEeCCCCCCCHH-HHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 28 LTTSLYVGDLDFNVTDS-QLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~-~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..+.+++.++-+..... ..+..|..+|.|..|++........+--++++.+....+++.|.. ..+.-+.++.+.+..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 44567778887777655 578899999999999987633333333388999999999999988 5677788888888776
Q ss_pred cCCCCCCC--------CCCccEEEeCCCcccCHHHHHhhhccccceEEEEEe-eCCCCCceeEEEEEEcCHHHHHHHHHH
Q 007673 107 HRDPSIRK--------SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIA-TDGSGQSKGFGFVQFENKESAQNAIDK 177 (593)
Q Consensus 107 ~~~~~~~~--------~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~-~~~~g~s~g~afV~F~~~e~A~~Al~~ 177 (593)
+..+.... ....++|++||+..+.+.+|...|..+|.+..+.+. ....+.-+|+||+.|..++++.+|+..
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f 728 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAF 728 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhh
Confidence 65442211 123468999999999999999999999987766665 335778899999999999999999975
Q ss_pred hCCceecCeeEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeC
Q 007673 178 LNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFE 257 (593)
Q Consensus 178 l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~ 257 (593)
..++.++ ...++|.|.|+.-|.++++.+++++|.+++..+....+|+.+|.++|.|.
T Consensus 729 ~d~~~~g-----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~ 785 (881)
T KOG0128|consen 729 RDSCFFG-----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYN 785 (881)
T ss_pred hhhhhhh-----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCC
Confidence 4443332 23499999999999999999999999999999988899999999999999
Q ss_pred CHHHHHHHHHHHCCCccCCceEEEec
Q 007673 258 NADDAAKAVEALNGKKFDDREWYVGK 283 (593)
Q Consensus 258 ~~e~A~~Ai~~l~g~~~~~~~l~v~~ 283 (593)
+..++..++...+...+....+.+..
T Consensus 786 ~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 786 TEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred CcchhhhhcccchhhhhhhcCccccc
Confidence 99999999877766666555544444
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.02 E-value=2.5e-09 Score=111.32 Aligned_cols=246 Identities=14% Similarity=0.006 Sum_probs=162.0
Q ss_pred EEEeCCCcccCHHHHHhhhccccceEEEEEeeCC-CCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchhh
Q 007673 120 IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQE 198 (593)
Q Consensus 120 lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~ 198 (593)
+-+++.+.+.+..+++++|... .|.+..+..+. .+...|-++|.|....++.+|+.. |.+..-+|.+.+........
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~~~ 391 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNLGR 391 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcccc
Confidence 4567778888899999998764 45555565553 444588999999999999999965 55566666666654432221
Q ss_pred hHHHH---------------------------------hhccccceeccCCCCCCCHHHHHHhhccCCCeeE-EEEeeCC
Q 007673 199 RETVA---------------------------------IKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITS-AVVMRDG 244 (593)
Q Consensus 199 ~~~~~---------------------------------~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~-v~i~~~~ 244 (593)
..... ......+|||..||..+++..+.++|...-.|++ |.+.+..
T Consensus 392 ~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P 471 (944)
T KOG4307|consen 392 NGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP 471 (944)
T ss_pred ccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC
Confidence 10000 0011236999999999999999999999888877 6666667
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHH---HHHh--------hhHHhhhhhhhc--cccc
Q 007673 245 DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSERE---QELK--------GQFEQAMKETVD--KFQG 311 (593)
Q Consensus 245 ~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~---~~~~--------~~~~~~~~~~~~--~~~~ 311 (593)
+++.++.|||.|..++++..|...-+...++.+.|.|.....+..-. .+.. .+.+...+.... ....
T Consensus 472 ~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m~~ek~~~~~~~lq~~~~dqre~~l~~p~~~v~~~~ 551 (944)
T KOG4307|consen 472 TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAMMMEKNGEQGIKLQQSDKDQRETALDGPIPSVSMVP 551 (944)
T ss_pred cccccchhhheeccccccchhhhcccccccCceEEEeechhhHHHHHHHhHHHHHHHhhhhhHHHHHhhcCCccchhhhh
Confidence 88889999999999999999887767777888999998877654311 1111 111111111100 1111
Q ss_pred ceeeeccCC-CCCCHHHHHHHhhcCCCeeE---EEEeeCCCCCCccEEEEEeCCHHHHHHHH
Q 007673 312 LNLYIKNLG-DSIDDEKLKELFSEFGTITS---CKVMRDPSGISKGSGFVAFSTPEEASRAL 369 (593)
Q Consensus 312 ~~l~V~nl~-~~~~~~~l~~~F~~~G~i~~---v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 369 (593)
.+-.+.+.+ ++.+..+.+.+-. +.+.+ +-+.+|..+.+++-+||.|.+...+.+-.
T Consensus 552 ~~~~~~~~~~F~~~~rr~~~e~~--~~~~~~n~~p~~~dN~~~~~~~~~v~~~n~p~~r~~~ 611 (944)
T KOG4307|consen 552 SKEQRSHEDDFDKKSRRSRWENT--SPIRSPNRSPLRRDNRDRSRSRSPVRRRNSPRRREEH 611 (944)
T ss_pred hhhhhccCcccccchHHHHhhhc--CCccCccccccccccCCcccccCccccCCCccccchh
Confidence 223344555 3555554444333 34443 45667778888999999999887777655
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=1.2e-09 Score=98.23 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=75.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQV-GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~-G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....-+||+.+|.-+.|.++..+|.++ |.|..+++-|.++||+|+|||||+|.+.+.|+-|-++||+..+.|+-+.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345679999999999999999999998 7899999999999999999999999999999999999999999999888876
Q ss_pred ccC
Q 007673 106 SHR 108 (593)
Q Consensus 106 s~~ 108 (593)
-..
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 543
No 125
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.97 E-value=6e-10 Score=102.91 Aligned_cols=168 Identities=27% Similarity=0.432 Sum_probs=129.9
Q ss_pred eeccCCCCCCCHHH---HHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccc
Q 007673 211 VFVKNLDESTTDED---LKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKK 287 (593)
Q Consensus 211 l~V~nlp~~~te~~---l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~ 287 (593)
.+++++-..+..+- +...|+.+-.+....+.++..+.-++++|+.|.....-..+...-+++.+....++....+..
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 44555544444433 367777777777777778877888999999999988888888777788887777666665543
Q ss_pred hHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHH
Q 007673 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEAS 366 (593)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 366 (593)
.... ...-......||.+.|..+++++.|-..|.+|-.....++++|. +|+++||+||.|.+..++.
T Consensus 179 edPs------------l~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 179 EDPS------------LAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred CCcc------------cccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 2210 00011233479999999999999999999999999999999885 8999999999999999999
Q ss_pred HHHHHhCCceecCeeeEEEeccch
Q 007673 367 RALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 367 ~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
+|+.+|+|+.++.++|.+.-..-+
T Consensus 247 rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred HHHHhhcccccccchhHhhhhhHH
Confidence 999999999999999987644433
No 126
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.94 E-value=2.2e-08 Score=96.36 Aligned_cols=75 Identities=19% Similarity=0.243 Sum_probs=63.0
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcCCC--eeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~G~--i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
..++||+||-|++|++||-+.....|. +.+++++.+ .+|.|||||+|...+....++.++.|-.+.|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 347999999999999999999988774 566666655 579999999999999999999999999999988655443
No 127
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.1e-09 Score=103.47 Aligned_cols=87 Identities=24% Similarity=0.394 Sum_probs=82.2
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
.+.-.++...|||--|.+-+|.++|.-+|+.||+|.++.|+||..|+-|+.||||+|.+.++.++|.=+|++..|+.+.|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 45556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccC
Q 007673 102 RIMYSHR 108 (593)
Q Consensus 102 ~v~~s~~ 108 (593)
.|-|++.
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9998864
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=3.1e-09 Score=102.57 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=70.6
Q ss_pred hcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceecCeeeEE
Q 007673 306 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYV 384 (593)
Q Consensus 306 ~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~-~~~~~~~~~l~v 384 (593)
..+...++|||++|.+.++|.+|+++|.+||+|.+++++.. ++||||+|.|.+.|+.|..+. |...|+|.+|.|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 34445678999999999999999999999999999999886 669999999999999999875 555779999999
Q ss_pred Eeccc
Q 007673 385 AVAQR 389 (593)
Q Consensus 385 ~~~~~ 389 (593)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99988
No 129
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=1.1e-09 Score=98.95 Aligned_cols=132 Identities=25% Similarity=0.371 Sum_probs=114.3
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~ 286 (593)
..++|||.|+...++++.|.++|-.-|.|..+.|..+.+++.+ |+||.|+++.+..-|++-++|..+.+..+.+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~---- 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT---- 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc----
Confidence 3467999999999999999999999999999999998888877 99999999999999999999999988877663
Q ss_pred chHHHHHHhhhHHhhhhhhhcccccceeeecc----CCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCH
Q 007673 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKN----LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTP 362 (593)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----l~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~ 362 (593)
++-++ |+..++++.+...|+.-|.+..+++..+.+|+.+.++|+.+...
T Consensus 83 ---------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 83 ---------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred ---------------------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 44455 67789999999999999999999999998899999999988655
Q ss_pred HHHHHHHH
Q 007673 363 EEASRALA 370 (593)
Q Consensus 363 ~~A~~A~~ 370 (593)
...-.+..
T Consensus 136 ~~~P~~~~ 143 (267)
T KOG4454|consen 136 CAVPFALD 143 (267)
T ss_pred hcCcHHhh
Confidence 44444443
No 130
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=6.6e-09 Score=100.16 Aligned_cols=86 Identities=30% Similarity=0.445 Sum_probs=79.7
Q ss_pred hcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEE
Q 007673 306 VDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (593)
Q Consensus 306 ~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v 384 (593)
...++.+.|||=.|..-++++||.-+|+.||.|.+|.|++| .+|-+-.||||+|.+.+++.+|.-+|++..|.+++|+|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34567789999999999999999999999999999999998 57889999999999999999999999999999999999
Q ss_pred EeccchH
Q 007673 385 AVAQRKE 391 (593)
Q Consensus 385 ~~~~~~~ 391 (593)
.|++.-.
T Consensus 314 DFSQSVs 320 (479)
T KOG0415|consen 314 DFSQSVS 320 (479)
T ss_pred ehhhhhh
Confidence 9997643
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.77 E-value=8.3e-09 Score=95.47 Aligned_cols=172 Identities=22% Similarity=0.322 Sum_probs=133.3
Q ss_pred EEEeCCCcccCHHH-H--HhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccch
Q 007673 120 IFIKNLDKSIDHKA-L--HDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (593)
Q Consensus 120 lfV~nLp~~~t~~~-L--~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~ 196 (593)
.++.++-.++..+- | ...|+.+-.....+++.+..+.-++++|+.|.....-.++-..-+++++....|++......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45555555544433 3 66777777777888888877888999999999888777776666677777776776655544
Q ss_pred hhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccC
Q 007673 197 QERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFD 275 (593)
Q Consensus 197 ~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~ 275 (593)
.......-....-.||.+.|..+++++-|...|.+|-.-...++++|. +|+++||+||.|.+..++..|+..++|+.++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 444333334455679999999999999999999999888888888884 6999999999999999999999999999999
Q ss_pred CceEEEeccccchHHH
Q 007673 276 DREWYVGKAQKKSERE 291 (593)
Q Consensus 276 ~~~l~v~~a~~~~~~~ 291 (593)
.+.+.......+..+.
T Consensus 259 srpiklRkS~wkeRn~ 274 (290)
T KOG0226|consen 259 SRPIKLRKSEWKERNL 274 (290)
T ss_pred cchhHhhhhhHHhhhh
Confidence 9998887665555333
No 132
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=1.7e-08 Score=90.92 Aligned_cols=80 Identities=26% Similarity=0.426 Sum_probs=72.6
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcC-CCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEF-GTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~-G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...+||+.+|.-+.+.+|..+|.+| |.|..+++-++ .+|.|+|||||+|++.+.|.-|.+.||++.+.++.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3469999999999999999999999 67788888555 689999999999999999999999999999999999999887
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 66
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=4.3e-08 Score=99.93 Aligned_cols=84 Identities=25% Similarity=0.470 Sum_probs=77.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
...+.|||.+|...+--.+|..+|++||+|...+|+.+.++---++|+||++.+.++|.+||+.|+.+.+.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 45789999999999999999999999999999999999888888899999999999999999999999999999999987
Q ss_pred cCCC
Q 007673 107 HRDP 110 (593)
Q Consensus 107 ~~~~ 110 (593)
+..+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 6544
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=4.5e-08 Score=94.68 Aligned_cols=77 Identities=23% Similarity=0.429 Sum_probs=68.8
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHh-cCCcccCCcEEEEe
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV-LNFTPLNNKSIRIM 104 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~-ln~~~i~g~~i~v~ 104 (593)
....++||||+|-..++|.+|+++|-+||.|.+|++...+ |+|||+|.+.+.|++|.++ +|...|+|.+|.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 4457999999999999999999999999999999998753 5899999999999999987 55557899999999
Q ss_pred eccC
Q 007673 105 YSHR 108 (593)
Q Consensus 105 ~s~~ 108 (593)
|...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 9877
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.68 E-value=1.1e-08 Score=110.01 Aligned_cols=160 Identities=21% Similarity=0.302 Sum_probs=135.8
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
...++||++|++..+++.+|+..|..+|.|.+|.|.+..-+...-|+||.|.+...+-.|.-.+.+..|....+......
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 44678999999999999999999999999999999887555556699999999999999998888888876665555543
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 365 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 365 (593)
.+ ....+.+++++|..++....|...|..||.|..|.+-.. -.|++|.|.+...|
T Consensus 450 ~k--------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~a 504 (975)
T KOG0112|consen 450 PK--------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAA 504 (975)
T ss_pred cc--------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccc
Confidence 21 124557999999999999999999999999998876543 44999999999999
Q ss_pred HHHHHHhCCceecC--eeeEEEeccch
Q 007673 366 SRALAEMNGKMIVS--KPLYVAVAQRK 390 (593)
Q Consensus 366 ~~A~~~~~~~~~~~--~~l~v~~~~~~ 390 (593)
..|++.|.|..|++ +++.|.|+...
T Consensus 505 q~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 505 QAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred hhhHHHHhcCcCCCCCcccccccccCC
Confidence 99999999999986 78999988764
No 136
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.66 E-value=1.7e-07 Score=76.04 Aligned_cols=78 Identities=22% Similarity=0.370 Sum_probs=68.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccC----CcEEEE
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQV--GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN----NKSIRI 103 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~--G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~----g~~i~v 103 (593)
+||.|+|+|...|.++|.+++... |..--+.+.-|-.++.+.|||||+|.++++|.+..+.+++..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999988764 67777888889999999999999999999999999999988764 567777
Q ss_pred eecc
Q 007673 104 MYSH 107 (593)
Q Consensus 104 ~~s~ 107 (593)
.|+.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 137
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.7e-07 Score=95.52 Aligned_cols=161 Identities=17% Similarity=0.306 Sum_probs=112.3
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEee-C---CCCCcce---eEEEEeCCHHHHHHHHHHHCCCccCCceE
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR-D---GDGKSKC---FGFVNFENADDAAKAVEALNGKKFDDREW 279 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~-~---~~g~~~g---~afV~F~~~e~A~~Ai~~l~g~~~~~~~l 279 (593)
..+.|||++||++++|++|...|..||.+.. .... . .....+| |+|+-|+++.+...-+.++.. +...+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 4567999999999999999999999998642 2221 1 1223456 999999999988887776543 33334
Q ss_pred EEeccccchHHH-HHHh----hhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhh-cCCCeeEEEEeeC-CCCCCc
Q 007673 280 YVGKAQKKSERE-QELK----GQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFS-EFGTITSCKVMRD-PSGISK 352 (593)
Q Consensus 280 ~v~~a~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~ 352 (593)
+........... ..+. ....-.........+..+|||++||.-++.++|-.+|+ -||.|.-+-|-.| +-+-.+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 332222111100 0000 00000011222334667999999999999999999998 7999999999888 556789
Q ss_pred cEEEEEeCCHHHHHHHHHH
Q 007673 353 GSGFVAFSTPEEASRALAE 371 (593)
Q Consensus 353 g~afV~f~~~~~A~~A~~~ 371 (593)
|-|-|+|.+...=.+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999984
No 138
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.65 E-value=7.3e-08 Score=91.55 Aligned_cols=80 Identities=30% Similarity=0.503 Sum_probs=75.6
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
.+.|+|.||+..|+++||+++|..||.+..+-+..++.|.+.|.|-|.|...+||.+|++.+||..++|+++.+.+....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999877653
No 139
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.61 E-value=3.1e-08 Score=97.88 Aligned_cols=168 Identities=24% Similarity=0.320 Sum_probs=134.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..+++|+|++.+.+.+.++..++..+|.+.............++|++++.|...+.+..|+.......+.++.+..-..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57899999999999999999999999988888887777778999999999999999999999544334444444332222
Q ss_pred CCC--------CCCCCCCccEE-EeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHH
Q 007673 108 RDP--------SIRKSGTGNIF-IKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDK 177 (593)
Q Consensus 108 ~~~--------~~~~~~~~~lf-V~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~ 177 (593)
... ........+++ +.+++.+++.++|+..|..+|.|+.+++..+ .++..+|+|||.|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 211 11223344455 9999999999999999999999999999988 6899999999999999999999976
Q ss_pred hCCceecCeeEEeccccch
Q 007673 178 LNGMLINDKQVFVGHFLRK 196 (593)
Q Consensus 178 l~g~~~~g~~l~v~~~~~~ 196 (593)
+...+.++.+.+....+.
T Consensus 247 -~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred -ccCcccCcccccccCCCC
Confidence 777888888877655443
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.61 E-value=2.2e-08 Score=107.74 Aligned_cols=163 Identities=20% Similarity=0.257 Sum_probs=136.2
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
...+...++||++|||+..+++.+|+..|..+|.|.+|.|.+-+.. .-.-||||.|.+...+-+|.-++....|....+
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~-~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK-TESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC-cccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 4445567899999999999999999999999999999999876443 333599999999999999999999888877788
Q ss_pred EEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCc
Q 007673 102 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM 181 (593)
Q Consensus 102 ~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~ 181 (593)
++.+.+. .......+++++|...+....|...|..||.|..|.+-. ...|+||.|++...+..|+..+.|.
T Consensus 444 r~glG~~----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 444 RIGLGQP----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred ccccccc----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcC
Confidence 8776653 223456799999999999999999999999998877643 4569999999999999999999998
Q ss_pred eecC--eeEEecccc
Q 007673 182 LIND--KQVFVGHFL 194 (593)
Q Consensus 182 ~~~g--~~l~v~~~~ 194 (593)
.+++ +.+.|.+..
T Consensus 515 p~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 515 PLGGPPRRLRVDLAS 529 (975)
T ss_pred cCCCCCccccccccc
Confidence 8875 456665543
No 141
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.53 E-value=1.5e-07 Score=96.03 Aligned_cols=81 Identities=26% Similarity=0.461 Sum_probs=73.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
..++||||.+|...+-..+|+.+|++||.|+..+|+.+.. -..++|+||++.+.++|.++|..||...+.|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 3577999999999999999999999999999999998742 225889999999999999999999999999999999987
Q ss_pred cc
Q 007673 388 QR 389 (593)
Q Consensus 388 ~~ 389 (593)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 64
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.48 E-value=3e-07 Score=96.55 Aligned_cols=83 Identities=30% Similarity=0.449 Sum_probs=73.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCC---CCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS---TRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~---t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.+.++.|||+||+++++|..|...|..||+|.+|+|+--.. ..+-..++||-|-+..||++|+++|++..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999999975321 234456899999999999999999999999999999
Q ss_pred EeeccC
Q 007673 103 IMYSHR 108 (593)
Q Consensus 103 v~~s~~ 108 (593)
+.|...
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.48 E-value=1.1e-07 Score=93.90 Aligned_cols=175 Identities=23% Similarity=0.253 Sum_probs=131.8
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEee-CCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMR-DGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~-~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
....+|++++...+.+.+...++..+|......+.. .....+++++.+.|...+.+..++.........+..+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 356799999999999998999999999776666655 3567889999999999999999997443344444443332222
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceee-eccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLY-IKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~ 363 (593)
....+. .............++| |++++..+++++|+.+|..+|.|..+++..+. .|.++|||+|+|.+..
T Consensus 167 ~~~~~~--------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 167 RRGLRP--------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccccc--------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 111000 0001111122333455 99999999999999999999999999998774 6889999999999999
Q ss_pred HHHHHHHHhCCceecCeeeEEEeccch
Q 007673 364 EASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 364 ~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
.+..++.. ....++++++.+....+.
T Consensus 239 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 239 SKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred hHHHHhhc-ccCcccCcccccccCCCC
Confidence 99999987 889999999999877654
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.46 E-value=4.6e-07 Score=93.22 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=70.2
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
....+|||+|||.++++++|+++|+.||.|+..+|......+++-+||||+|.+.+++..|+++ +...++|+.+.|.--
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 3456799999999999999999999999999999988765566669999999999999999995 577889999999854
Q ss_pred c
Q 007673 107 H 107 (593)
Q Consensus 107 ~ 107 (593)
.
T Consensus 365 ~ 365 (419)
T KOG0116|consen 365 R 365 (419)
T ss_pred c
Confidence 3
No 145
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.45 E-value=5.8e-07 Score=85.49 Aligned_cols=79 Identities=30% Similarity=0.463 Sum_probs=72.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~ 108 (593)
...|+|.|||+.+++++|+++|..||.+..+-+..|. .++|+|.|-|.|...+||.+|++.+|+..++|+++++.....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4789999999999999999999999999999888885 478999999999999999999999999999999998876544
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=1.2e-06 Score=90.23 Aligned_cols=79 Identities=25% Similarity=0.414 Sum_probs=68.1
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
....|||+|||.+++.++|+++|..||.|+...|.... .++..+||||+|.+.+++..||.+- -..+++++|.|+-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 44559999999999999999999999999998887654 4555599999999999999999854 778899999999665
Q ss_pred c
Q 007673 389 R 389 (593)
Q Consensus 389 ~ 389 (593)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 4
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.32 E-value=1.9e-06 Score=90.66 Aligned_cols=82 Identities=32% Similarity=0.516 Sum_probs=74.4
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC----CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeE
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~ 383 (593)
.+..+||||+||+..++++.|...|..||.|.+++|+... .-+.+.||||.|-+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567899999999999999999999999999999998653 234578999999999999999999999999999999
Q ss_pred EEeccc
Q 007673 384 VAVAQR 389 (593)
Q Consensus 384 v~~~~~ 389 (593)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=3.9e-06 Score=68.24 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=66.7
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcC--CCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceec----CeeeEE
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIV----SKPLYV 384 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~--G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~----~~~l~v 384 (593)
++|.|+|||...|.++|.+++... |...-+-+..|- ++.+.|||||.|.+.+.|.+..+.++|+.+. .|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998654 667777777773 5667999999999999999999999999885 577888
Q ss_pred Eeccc
Q 007673 385 AVAQR 389 (593)
Q Consensus 385 ~~~~~ 389 (593)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88864
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.27 E-value=1.1e-06 Score=83.86 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=76.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....+++||||+...+|-+++...|+.||.|..|.+..|+.++.++|||||+|.+.+.+.+++. ||+..|.|+.+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456899999999999999999999999999999999999999999999999999999999999 999999999999986
Q ss_pred ccC
Q 007673 106 SHR 108 (593)
Q Consensus 106 s~~ 108 (593)
-..
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 543
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.24 E-value=5.1e-06 Score=64.03 Aligned_cols=70 Identities=27% Similarity=0.356 Sum_probs=48.8
Q ss_pred cEEEEeCCCCCCCHHHHH----HHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 30 TSLYVGDLDFNVTDSQLY----DLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~----~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
+.|||.|||.+.+-..|. .++..+| +|.+|. .|.|+|.|.+.+.|.+|.+.|++..+-|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 579999999999888764 4555675 888882 2579999999999999999999999999999999
Q ss_pred eccCC
Q 007673 105 YSHRD 109 (593)
Q Consensus 105 ~s~~~ 109 (593)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87543
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.22 E-value=1.6e-07 Score=92.71 Aligned_cols=154 Identities=23% Similarity=0.357 Sum_probs=120.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc-ccCCcEEEEeeccC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT-PLNNKSIRIMYSHR 108 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~-~i~g~~i~v~~s~~ 108 (593)
..||+|||.+.++.++|..+|.....-.+-.++. -.|||||++.+..-|.+|++++++. .+.|+++.+..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999998762111111111 1279999999999999999999976 58999999987754
Q ss_pred CCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeE
Q 007673 109 DPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188 (593)
Q Consensus 109 ~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l 188 (593)
... .++.+-|+|+|+...++.|..+...||.+.+|....... ..-.--|+|.+.+.++-|+.+++|..+.+..+
T Consensus 76 kkq----rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~ 149 (584)
T KOG2193|consen 76 KKQ----RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHL 149 (584)
T ss_pred HHH----HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhh
Confidence 322 234589999999999999999999999999998865321 11223367899999999999999999888888
Q ss_pred Eeccccc
Q 007673 189 FVGHFLR 195 (593)
Q Consensus 189 ~v~~~~~ 195 (593)
.+.+...
T Consensus 150 k~~YiPd 156 (584)
T KOG2193|consen 150 KVGYIPD 156 (584)
T ss_pred hcccCch
Confidence 7766543
No 152
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=8.7e-07 Score=91.33 Aligned_cols=71 Identities=27% Similarity=0.440 Sum_probs=64.5
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~ 383 (593)
....+|+|-|||.+|++++|+.+|+.||+|..|+.-+. .+|.+||+|.|..+|.+|+++||+..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568999999999999999999999999999876555 467899999999999999999999999999887
No 153
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.03 E-value=2.1e-06 Score=85.01 Aligned_cols=155 Identities=24% Similarity=0.411 Sum_probs=120.1
Q ss_pred cceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCc-cCCceEEEeccccc
Q 007673 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKK-FDDREWYVGKAQKK 287 (593)
Q Consensus 209 ~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~-~~~~~l~v~~a~~~ 287 (593)
+.+|++||.+..+.+++..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++++. +.|+.+.+...-.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 4589999999999999999997642211111222 15799999999999999999998875 67887777665444
Q ss_pred hHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHH
Q 007673 288 SEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASR 367 (593)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 367 (593)
..+. +.+-|.|+|...-.+.|..+...||.+..|..+....- .-..-|+|.+.+.+..
T Consensus 77 kqrs--------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 77 KQRS--------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQ 134 (584)
T ss_pred HHHh--------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHH
Confidence 3322 24889999999999999999999999999865433211 1234478999999999
Q ss_pred HHHHhCCceecCeeeEEEeccch
Q 007673 368 ALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 368 A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|+..++|..+....+.|.|....
T Consensus 135 ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 135 AIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HHHhhcchHhhhhhhhcccCchh
Confidence 99999999999999999887654
No 154
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.03 E-value=7.1e-06 Score=78.46 Aligned_cols=81 Identities=22% Similarity=0.349 Sum_probs=73.8
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
......+||+|++..+|.+++..+|+.||.|..+.+..|. .|.++||+||.|.+.+.+..|+. |+|..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3456689999999999999999999999999999998886 45799999999999999999999 999999999999998
Q ss_pred ccc
Q 007673 387 AQR 389 (593)
Q Consensus 387 ~~~ 389 (593)
.+.
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 764
No 155
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.98 E-value=2.7e-06 Score=83.59 Aligned_cols=204 Identities=14% Similarity=0.152 Sum_probs=120.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEe---eCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCR---DLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~---d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..|-|.||.+++|.++++.+|..+|+|..++++. |....-..-.|||.|.+...+..|-. |.++.|-++-|-|...
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 3899999999999999999999999999999976 32333455789999999999998888 5556666655544322
Q ss_pred cCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCe
Q 007673 107 HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186 (593)
Q Consensus 107 ~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~ 186 (593)
-. ..+..+. .|..+++-..+.-....+| |-|.+.--. -+..++...|
T Consensus 87 ~~------------------~~~p~r~---af~~l~~~navprll~pdg-------~Lp~~~~lt--~~nh~p~ail--- 133 (479)
T KOG4676|consen 87 GD------------------EVIPDRF---AFVELADQNAVPRLLPPDG-------VLPGDRPLT--KINHSPNAIL--- 133 (479)
T ss_pred CC------------------CCCccHH---HHHhcCcccccccccCCCC-------ccCCCCccc--cccCCcccee---
Confidence 11 1111111 3333332211111000111 000000000 0000010111
Q ss_pred eEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHH
Q 007673 187 QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266 (593)
Q Consensus 187 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai 266 (593)
..+..+...... ....-..+++|.+|...+...++.+.|..+|.|....+-. +....+|.+.|....+...|+
T Consensus 134 ---ktP~Lp~~~~A~-kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as---k~~s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 134 ---KTPELPPQAAAK-KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS---KSRSSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred ---cCCCCChHhhhh-hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc---cCCCcchhhhHhhhhhHHHHH
Confidence 111111111111 1112236799999999999999999999999987655433 333557889999988888888
Q ss_pred HHHCCCccC
Q 007673 267 EALNGKKFD 275 (593)
Q Consensus 267 ~~l~g~~~~ 275 (593)
. .+|..+.
T Consensus 207 r-~~gre~k 214 (479)
T KOG4676|consen 207 R-SHGRERK 214 (479)
T ss_pred H-hcchhhh
Confidence 6 5777765
No 156
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.92 E-value=3.3e-05 Score=59.62 Aligned_cols=68 Identities=26% Similarity=0.444 Sum_probs=47.1
Q ss_pred eeeeccCCCCCCHHH----HHHHhhcCC-CeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 313 NLYIKNLGDSIDDEK----LKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~----l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
-|||.|||.+.+... |+.++..+| .|.+|. .+.|+|.|.+.+.|.+|.+.|+|..+.|.+|.|+|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 599999999988765 555666775 576652 458999999999999999999999999999999998
Q ss_pred cc
Q 007673 388 QR 389 (593)
Q Consensus 388 ~~ 389 (593)
..
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.83 E-value=4e-05 Score=63.92 Aligned_cols=77 Identities=34% Similarity=0.556 Sum_probs=48.2
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhC-----CceecCeeeEEE
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN-----GKMIVSKPLYVA 385 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~-----~~~~~~~~l~v~ 385 (593)
++.|+|.+++..++.++|++.|+.||.|..|.+....+ .|+|.|.+.++|.+|+..+. +..+.+..+.++
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46799999999999999999999999999988876533 79999999999999999873 446778888887
Q ss_pred eccchHH
Q 007673 386 VAQRKEE 392 (593)
Q Consensus 386 ~~~~~~~ 392 (593)
+-...++
T Consensus 76 vLeGeeE 82 (105)
T PF08777_consen 76 VLEGEEE 82 (105)
T ss_dssp ---HHHH
T ss_pred ECCCHHH
Confidence 7665443
No 158
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.68 E-value=7e-05 Score=73.68 Aligned_cols=87 Identities=18% Similarity=0.300 Sum_probs=78.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCe--------EEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcc
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV--------LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP 95 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V--------~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~ 95 (593)
.......||||-.||..+++.+|.++|.+||.| -.|++.+|+.|++++|-|.|.|.+...|+.|+.-++...
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 335567899999999999999999999999977 358889999999999999999999999999999999999
Q ss_pred cCCcEEEEeeccCCC
Q 007673 96 LNNKSIRIMYSHRDP 110 (593)
Q Consensus 96 i~g~~i~v~~s~~~~ 110 (593)
|.|..|+|..+.+.+
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999998776543
No 159
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.66 E-value=0.00021 Score=76.58 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=19.8
Q ss_pred HHHHHHHhhhcchhhHh-----hh---cCCcccchhhhh--cCCCHHHHHH
Q 007673 508 PEQQRTLLGESLYPLVE-----QL---ERDAAAKVTGML--LEMDQTEVLH 548 (593)
Q Consensus 508 ~~~~~~~lg~~l~~~v~-----~~---~~~~a~kitgml--l~~~~~~~~~ 548 (593)
+..+|+..|..+-..+. .+ +...|.+..=|| +.|+-+||-.
T Consensus 670 ~k~~k~~e~~eekkt~~kKk~kel~ilDsKtaQnLsIflgS~rmpyeeik~ 720 (1102)
T KOG1924|consen 670 PKVKKEQEGGEEKKTGTKKKVKELRILDSKTAQNLSIFLGSFRMPYEEIKN 720 (1102)
T ss_pred ccccccccccccccchhhhhhhhheecchHHHHHHHHHHhhccCCHHHHHH
Confidence 35566666666555541 11 344454443222 2366666543
No 160
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.63 E-value=0.00011 Score=61.29 Aligned_cols=59 Identities=29% Similarity=0.407 Sum_probs=40.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~ 94 (593)
+.|.|.+++.+++-++|+++|+.||.|..|.+.++.. .|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999999877533 6899999999999999987643
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.58 E-value=0.00019 Score=69.37 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=70.8
Q ss_pred CCCCCCCCCCCCccEEEEeCCCCCCCHHHH------HHHHhccCCeEEEEEEeeCCCCCcc-cEE--EEEecCHHHHHHH
Q 007673 17 GVAAGASGNQFLTTSLYVGDLDFNVTDSQL------YDLFSQVGQVLSVRVCRDLSTRRSL-GYG--YVNYANPADAARA 87 (593)
Q Consensus 17 ~~~~~~~~~~~~~~sL~V~nLp~~~te~~L------~~~F~~~G~V~~i~v~~d~~t~~s~-g~A--fV~F~s~e~A~~A 87 (593)
++...+...--...-+||-+||+.+..+++ .++|.+||+|..|.|-+......|. +.+ ||.|.+.+||.+|
T Consensus 102 nrkhlsniRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarc 181 (480)
T COG5175 102 NRKHLSNIRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARC 181 (480)
T ss_pred cccccccceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHH
Confidence 334445555556778999999998866662 5799999999999887764322222 223 9999999999999
Q ss_pred HHhcCCcccCCcEEEEeecc
Q 007673 88 LDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 88 l~~ln~~~i~g~~i~v~~s~ 107 (593)
|.+.++..++||.|+..|..
T Consensus 182 Ia~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 182 IAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred HHHhccccccCceEeeecCc
Confidence 99999999999999998754
No 162
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.56 E-value=0.00029 Score=75.51 Aligned_cols=16 Identities=19% Similarity=0.652 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHhccCC
Q 007673 40 NVTDSQLYDLFSQVGQ 55 (593)
Q Consensus 40 ~~te~~L~~~F~~~G~ 55 (593)
++++.++.++|...|.
T Consensus 82 ~ls~~e~~~~F~~~~~ 97 (1102)
T KOG1924|consen 82 SLSSNEVLELFELMGE 97 (1102)
T ss_pred hccHHHHHHHHHHHhh
Confidence 3555556666665543
No 163
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.55 E-value=9.1e-05 Score=71.90 Aligned_cols=76 Identities=20% Similarity=0.389 Sum_probs=68.6
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccC--CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVG--QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G--~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.-++|||||-|.+|++||.+.+...| .+.+++++.+..++.|+|||+|...+....++.++-|-...|+|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 45799999999999999999988877 78999999999999999999999999999999999999888988755443
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=0.00067 Score=63.73 Aligned_cols=93 Identities=25% Similarity=0.308 Sum_probs=81.8
Q ss_pred HHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCee
Q 007673 260 DDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT 339 (593)
Q Consensus 260 e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~ 339 (593)
.-|..|...|++....++.+.|.++.+. .|||.||...++-|.|...|+.||.|.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~a-------------------------~l~V~nl~~~~sndll~~~f~~fg~~e 59 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMHA-------------------------ELYVVNLMQGASNDLLEQAFRRFGPIE 59 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeeccc-------------------------eEEEEecchhhhhHHHHHhhhhcCccc
Confidence 3466777788999999999999998552 499999999999999999999999999
Q ss_pred EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 007673 340 SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377 (593)
Q Consensus 340 ~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~ 377 (593)
...+..|..++..+-++|.|...-.|.+|....+-.-+
T Consensus 60 ~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 60 RAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred hheeeecccccccccchhhhhcchhHHHHHHHhccCcc
Confidence 99899999999999999999999999999997754333
No 165
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.47 E-value=6.1e-05 Score=74.32 Aligned_cols=213 Identities=15% Similarity=0.141 Sum_probs=124.5
Q ss_pred CCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC----CCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEec
Q 007673 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG----SGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVG 191 (593)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~----~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~ 191 (593)
..+.|.|.||.++++.++++.+|...|.|..+.+..+. .......|||.|.+...+..|- .|.++.+-++.+.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEE
Confidence 34578999999999999999999999999999998752 3445668999999999887776 566666666776664
Q ss_pred cccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCC
Q 007673 192 HFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNG 271 (593)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g 271 (593)
++.... -+++. .|..++.-..+-=.... +|
T Consensus 85 p~~~~~-----------------------~p~r~--af~~l~~~navprll~p-------------------------dg 114 (479)
T KOG4676|consen 85 PYGDEV-----------------------IPDRF--AFVELADQNAVPRLLPP-------------------------DG 114 (479)
T ss_pred ecCCCC-----------------------CccHH--HHHhcCcccccccccCC-------------------------CC
Confidence 432211 11111 33333322111100000 11
Q ss_pred CccCCceEEEeccccchH-HHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCC
Q 007673 272 KKFDDREWYVGKAQKKSE-REQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGI 350 (593)
Q Consensus 272 ~~~~~~~l~v~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~ 350 (593)
..+....+...-+.+... ....+....+...-+. -..+++|.+|...|...++-+.|..+|+|...++--. .
T Consensus 115 ~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~klee----irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask---~ 187 (479)
T KOG4676|consen 115 VLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEE----IRRTREVQSLISAAILPESGESFERKGEVSYAHTASK---S 187 (479)
T ss_pred ccCCCCccccccCCccceecCCCCChHhhhhhhHH----HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc---C
Confidence 111111110000000000 0000111111111111 1247999999999999999999999999877655433 2
Q ss_pred CccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 351 SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 351 ~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
..-+|-|.|........|+. ++|+.+.-....+.+.
T Consensus 188 ~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~ 223 (479)
T KOG4676|consen 188 RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAII 223 (479)
T ss_pred CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhc
Confidence 34567799988777777776 7777766444444433
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.47 E-value=0.0001 Score=72.61 Aligned_cols=84 Identities=24% Similarity=0.423 Sum_probs=72.7
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeE--------EEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 378 (593)
.....+|||.++++.+++++|.++|.++|.|.. |.|.++ +++..|+-|.|.|.+...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345568999999999999999999999998853 344444 47889999999999999999999999999999
Q ss_pred CeeeEEEeccchH
Q 007673 379 SKPLYVAVAQRKE 391 (593)
Q Consensus 379 ~~~l~v~~~~~~~ 391 (593)
+..|.|.++..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887654
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.00054 Score=64.35 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=80.1
Q ss_pred HHHHHHHHhcCCcccCCcEEEEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEE
Q 007673 82 ADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFG 161 (593)
Q Consensus 82 e~A~~Al~~ln~~~i~g~~i~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~a 161 (593)
.-|+.|..+|++....|+.++|.|+.. ..|+|.||..-++.+.|..-|+.||.|....++.|..+...+-+
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg 75 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREG 75 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccc
Confidence 346677778889999999999998753 46999999999999999999999999999999999889999999
Q ss_pred EEEEcCHHHHHHHHHHhC
Q 007673 162 FVQFENKESAQNAIDKLN 179 (593)
Q Consensus 162 fV~F~~~e~A~~Al~~l~ 179 (593)
+|.|...-.|.+|+..+.
T Consensus 76 ~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCR 93 (275)
T ss_pred hhhhhcchhHHHHHHHhc
Confidence 999999999999998774
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.26 E-value=0.00069 Score=48.78 Aligned_cols=52 Identities=23% Similarity=0.467 Sum_probs=42.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHH
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARAL 88 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al 88 (593)
+.|-|.+.+++..+ +++..|..||.|..+.+-. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 57889999977664 4555899999999988852 2238999999999999986
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00088 Score=69.44 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=64.4
Q ss_pred ccceeeeccCCCCCC------HHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceec-Ceee
Q 007673 310 QGLNLYIKNLGDSID------DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPL 382 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~-~~~l 382 (593)
-.++|+|.|+|---. ..-|.++|+++|.|..+.+..++.|.++||.|++|.+..+|..|++.+||+.++ .+.+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 345799999984322 245677999999999999998998889999999999999999999999999986 4566
Q ss_pred EEEec
Q 007673 383 YVAVA 387 (593)
Q Consensus 383 ~v~~~ 387 (593)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66544
No 170
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.21 E-value=0.00077 Score=65.34 Aligned_cols=81 Identities=25% Similarity=0.466 Sum_probs=64.2
Q ss_pred ccceeeeccCCCCCCHHHH------HHHhhcCCCeeEEEEeeCC-C-CCCcc--EEEEEeCCHHHHHHHHHHhCCceecC
Q 007673 310 QGLNLYIKNLGDSIDDEKL------KELFSEFGTITSCKVMRDP-S-GISKG--SGFVAFSTPEEASRALAEMNGKMIVS 379 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l------~~~F~~~G~i~~v~i~~~~-~-g~~~g--~afV~f~~~~~A~~A~~~~~~~~~~~ 379 (593)
+..-+||-+|+..+-+|++ .++|.+||.|..|.|-+.. . +...+ -.||+|.+.+||.+||.+.+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 3445899999998877762 4699999999998876653 1 11112 24999999999999999999999999
Q ss_pred eeeEEEeccch
Q 007673 380 KPLYVAVAQRK 390 (593)
Q Consensus 380 ~~l~v~~~~~~ 390 (593)
|-|+..|...|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999988644
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.02 E-value=0.0013 Score=47.31 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=41.2
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHH
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRAL 369 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~ 369 (593)
+.|-|.+.+.+.. +++..+|..||+|..+.+.. ...+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 3577888876655 45666999999999988762 2458999999999999985
No 172
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.94 E-value=0.00055 Score=64.22 Aligned_cols=74 Identities=23% Similarity=0.333 Sum_probs=62.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCC--------CCcc----cEEEEEecCHHHHHHHHHhcCCcc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST--------RRSL----GYGYVNYANPADAARALDVLNFTP 95 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t--------~~s~----g~AfV~F~s~e~A~~Al~~ln~~~ 95 (593)
.+-.||++++|+...-..|+++|+.||.|-.|.+-....+ +.+. --++|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999998776544 2222 236799999999999999999999
Q ss_pred cCCcEE
Q 007673 96 LNNKSI 101 (593)
Q Consensus 96 i~g~~i 101 (593)
|.|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 998654
No 173
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.91 E-value=0.00046 Score=64.96 Aligned_cols=64 Identities=20% Similarity=0.366 Sum_probs=53.7
Q ss_pred HHHHHHhh-cCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 326 EKLKELFS-EFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 326 ~~l~~~F~-~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
+||...|+ +||+|++++|-.+-.-.-+|.++|.|...++|.+|+..|||..+.|++|+..+..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 55666666 99999998765544334688999999999999999999999999999999998863
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.85 E-value=0.00093 Score=67.10 Aligned_cols=69 Identities=20% Similarity=0.385 Sum_probs=57.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEee---CCC---CC-------cccEEEEEecCHHHHHHHHHhcC
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD---LST---RR-------SLGYGYVNYANPADAARALDVLN 92 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d---~~t---~~-------s~g~AfV~F~s~e~A~~Al~~ln 92 (593)
.-++++|.+-|||.+-.-+.|.++|+.+|.|++|+||.- ... .. .+-+|+|+|...+.|.+|.+.+|
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 347999999999999999999999999999999999986 111 11 13579999999999999999775
Q ss_pred Cc
Q 007673 93 FT 94 (593)
Q Consensus 93 ~~ 94 (593)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.79 E-value=0.00061 Score=64.17 Aligned_cols=63 Identities=25% Similarity=0.430 Sum_probs=53.0
Q ss_pred HHHHHHHh-ccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 44 SQLYDLFS-QVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 44 ~~L~~~F~-~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
++|+.-|+ +||.|.++.||.... ..-.|-+||.|...++|++|++.||+..|.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 899999999988643 3567899999999999999999999999999999888764
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.68 E-value=0.0062 Score=50.03 Aligned_cols=77 Identities=22% Similarity=0.191 Sum_probs=52.2
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEE-eeC------CCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVC-RDL------STRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~-~d~------~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
..+.|.|-+.|++ ....|.+.|++||.|.+..-+ ++. .......+..|.|.++.+|.+||. .|+..|.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567999999988 677888999999999887511 100 001122489999999999999999 6999998865
Q ss_pred E-EEeec
Q 007673 101 I-RIMYS 106 (593)
Q Consensus 101 i-~v~~s 106 (593)
+ -|.|.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 35554
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.63 E-value=0.0014 Score=61.56 Aligned_cols=69 Identities=23% Similarity=0.396 Sum_probs=59.3
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC---------CCCcc----EEEEEeCCHHHHHHHHHHhCCceecC
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS---------GISKG----SGFVAFSTPEEASRALAEMNGKMIVS 379 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~---------g~~~g----~afV~f~~~~~A~~A~~~~~~~~~~~ 379 (593)
.||+++||...+-..|+++|+.||.|-.|.+-.... |...+ -|+|+|.+-..|.+....|||..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 699999999999999999999999999998876532 22222 37899999999999999999999998
Q ss_pred ee
Q 007673 380 KP 381 (593)
Q Consensus 380 ~~ 381 (593)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 74
No 178
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.0015 Score=72.79 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=59.6
Q ss_pred HHHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHH--HHHHHHHhhh
Q 007673 510 QQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAM--EVLRSVAQQQ 574 (593)
Q Consensus 510 ~~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~--~~l~~~~~~~ 574 (593)
-.+|.||++||++++.+.|.+|-||||||||.....++.+|..++-|...|++|+ +++..|-.+.
T Consensus 2606 Ae~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qei 2672 (3015)
T KOG0943|consen 2606 AERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQEI 2672 (3015)
T ss_pred hhhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHHh
Confidence 4567799999999999999999999999999999999999999999999999999 8888876553
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.47 E-value=0.01 Score=51.70 Aligned_cols=58 Identities=19% Similarity=0.401 Sum_probs=46.6
Q ss_pred HHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchH
Q 007673 326 EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391 (593)
Q Consensus 326 ~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~ 391 (593)
.+|-+.|..||++.=+|+..+ .-+|+|.+-+.|.+|+. ++|..++|+.|.|++..+.-
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 367788999999988887765 58999999999999998 99999999999999887653
No 180
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.40 E-value=0.014 Score=48.03 Aligned_cols=76 Identities=22% Similarity=0.256 Sum_probs=51.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEE-EeeCC-------CCCCccEEEEEeCCHHHHHHHHHHhCCceecCee
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRDP-------SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~-i~~~~-------~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 381 (593)
..+.|.|-+.|.. ....|-++|++||+|.+.. +.++. .-....+.-|+|++..+|.+|+. .||..++|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 3456888899888 5567888999999998764 11110 01235688999999999999998 8999998864
Q ss_pred e-EEEec
Q 007673 382 L-YVAVA 387 (593)
Q Consensus 382 l-~v~~~ 387 (593)
+ -|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 46655
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.40 E-value=0.009 Score=52.07 Aligned_cols=74 Identities=23% Similarity=0.297 Sum_probs=53.9
Q ss_pred CCCccEEEEeCCCC------CCCH---HHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc
Q 007673 26 QFLTTSLYVGDLDF------NVTD---SQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL 96 (593)
Q Consensus 26 ~~~~~sL~V~nLp~------~~te---~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i 96 (593)
.++..||.|.=+.+ ...+ .+|.+.|+.||.|.-||+..+ .-+|.|.+.+.|-+|++ +++..+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 34577888876662 2332 257778999999999988775 46899999999999999 899999
Q ss_pred CCcEEEEeeccC
Q 007673 97 NNKSIRIMYSHR 108 (593)
Q Consensus 97 ~g~~i~v~~s~~ 108 (593)
.|+.++|.....
T Consensus 95 ~g~~l~i~LKtp 106 (146)
T PF08952_consen 95 NGRTLKIRLKTP 106 (146)
T ss_dssp TTEEEEEEE---
T ss_pred CCEEEEEEeCCc
Confidence 999999976543
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.36 E-value=0.0088 Score=62.68 Aligned_cols=84 Identities=25% Similarity=0.253 Sum_probs=68.2
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhc-CCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---cCeeeE
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI---VSKPLY 383 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~---~~~~l~ 383 (593)
......|||.||-.-+|.-.|+.++.. .|.|++. +|.. -+..|||.|.+.++|...+.+|||..+ +.|.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 335667999999999999999999985 5566666 3322 244699999999999999999999977 789999
Q ss_pred EEeccchHHHHHH
Q 007673 384 VAVAQRKEERRAR 396 (593)
Q Consensus 384 v~~~~~~~~r~~~ 396 (593)
+.|....+..+.+
T Consensus 516 adf~~~deld~hr 528 (718)
T KOG2416|consen 516 ADFVRADELDKHR 528 (718)
T ss_pred eeecchhHHHHHh
Confidence 9999887765543
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.34 E-value=0.014 Score=55.97 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=56.2
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCC--CccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchHHH
Q 007673 325 DEKLKELFSEFGTITSCKVMRDPSGI--SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEER 393 (593)
Q Consensus 325 ~~~l~~~F~~~G~i~~v~i~~~~~g~--~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r 393 (593)
++++++.+++||.|..|.|+.+++-. ----.||+|...++|.+|+-.|||+.|+|+.+..-|.....-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs 370 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFS 370 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhh
Confidence 46788999999999999888764211 1234799999999999999999999999999988887655433
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.98 E-value=0.033 Score=41.08 Aligned_cols=54 Identities=26% Similarity=0.383 Sum_probs=44.9
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcC---CCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEF---GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~---G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 372 (593)
..|+|++++ ..+-++|+.+|..| ....+|..+.|.. |-|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS------cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS------CNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc------EEEEECCHHHHHHHHHcC
Confidence 369999985 57889999999999 2356888888853 889999999999999764
No 185
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.97 E-value=0.012 Score=61.46 Aligned_cols=79 Identities=25% Similarity=0.396 Sum_probs=64.0
Q ss_pred CCccEEEeCCCccc------CHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceec-CeeE
Q 007673 116 GTGNIFIKNLDKSI------DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQV 188 (593)
Q Consensus 116 ~~~~lfV~nLp~~~------t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~-g~~l 188 (593)
-...|+|.|+|--- -..-|..+|+.+|.++...+..++.|..+||.|++|.+..+|..|++.+||+.+. ++..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 35578888888532 2345667899999999999998988889999999999999999999999998774 5666
Q ss_pred Eecccc
Q 007673 189 FVGHFL 194 (593)
Q Consensus 189 ~v~~~~ 194 (593)
.+..+.
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 665544
No 186
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.83 E-value=0.032 Score=43.45 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=42.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN 92 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln 92 (593)
-..||+ .|..+...||.++|+.||.| .|..+.| ..|||...+.+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 356665 99999999999999999998 5666555 269999999999999999876
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.76 E-value=0.026 Score=54.11 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=53.4
Q ss_pred HHHHHHHHhccCCeEEEEEEeeCCCCCc-ccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccC
Q 007673 43 DSQLYDLFSQVGQVLSVRVCRDLSTRRS-LGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (593)
Q Consensus 43 e~~L~~~F~~~G~V~~i~v~~d~~t~~s-~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~ 108 (593)
|+++.+-+.+||+|..|.|+.+...--- .--.||+|...++|.+|+-.||+..|.|+.++..|.+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4557788999999999999887532111 12369999999999999999999999999999887654
No 188
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.72 E-value=0.02 Score=57.88 Aligned_cols=66 Identities=27% Similarity=0.355 Sum_probs=55.4
Q ss_pred CCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC---C---CCCc--------eeEEEEEEcCHHHHHHHHHHhCCc
Q 007673 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD---G---SGQS--------KGFGFVQFENKESAQNAIDKLNGM 181 (593)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~---~---~g~s--------~g~afV~F~~~e~A~~Al~~l~g~ 181 (593)
..++|.+.|||.+-..+.|.++|..+|.|.+|+|.+- + .+.. +-+|+|+|+..+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5778999999999999999999999999999999865 1 1222 347899999999999999877543
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.72 E-value=0.058 Score=46.34 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=61.4
Q ss_pred CCCccEEEEeCCCCCC-CHHH---HHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 26 QFLTTSLYVGDLDFNV-TDSQ---LYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~-te~~---L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
.++++||.|+=|..++ ..+| |...++.||+|.+|..|.. -.|.|.|.+..+|-+|+.++.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 5678999999888776 3344 4556788999999999864 2599999999999999998764 6778999
Q ss_pred EEeeccCC
Q 007673 102 RIMYSHRD 109 (593)
Q Consensus 102 ~v~~s~~~ 109 (593)
++.|.++.
T Consensus 155 qCsWqqrF 162 (166)
T PF15023_consen 155 QCSWQQRF 162 (166)
T ss_pred Eeeccccc
Confidence 99998764
No 190
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.95 E-value=0.022 Score=59.78 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=64.8
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc---C
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFS-QVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL---N 97 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~-~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i---~ 97 (593)
+......+..|||.||=..+|.-+|++++. ..|.|.+.++-+ . + -.|||.|.+.++|...+..||+..+ +
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk--I--K--ShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK--I--K--SHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH--h--h--cceeEecccHHHHHHHHHHHhccccCCCC
Confidence 334566789999999999999999999998 567787775422 1 2 3699999999999999999998765 5
Q ss_pred CcEEEEeeccCC
Q 007673 98 NKSIRIMYSHRD 109 (593)
Q Consensus 98 g~~i~v~~s~~~ 109 (593)
++.|.+.|...+
T Consensus 511 PK~L~adf~~~d 522 (718)
T KOG2416|consen 511 PKHLIADFVRAD 522 (718)
T ss_pred CceeEeeecchh
Confidence 677777665543
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.87 E-value=0.16 Score=37.55 Aligned_cols=53 Identities=23% Similarity=0.341 Sum_probs=44.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQV----GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~----G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l 91 (593)
..|+|+++. +.+.++|+.+|..| + ...|..+.|. -|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 479999996 69999999999999 5 4477777773 3679999999999999864
No 192
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.65 E-value=0.97 Score=44.00 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=103.3
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeC-------CCCCcccEEEEEecCHHHHHHH----HHh
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDL-------STRRSLGYGYVNYANPADAARA----LDV 90 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~-------~t~~s~g~AfV~F~s~e~A~~A----l~~ 90 (593)
.|.+...+|+|.+.|+..+++-..+...|-+||+|.+|.++.+. ...+......+-|-+.+.+-.. ++.
T Consensus 8 kGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQr 87 (309)
T PF10567_consen 8 KGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQR 87 (309)
T ss_pred CCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999876 1123345689999999876432 332
Q ss_pred cC--CcccCCcEEEEeeccC-----C-----C--------------CCCCCCCccEEEeCCCcccCHHHHHh----hhcc
Q 007673 91 LN--FTPLNNKSIRIMYSHR-----D-----P--------------SIRKSGTGNIFIKNLDKSIDHKALHD----TFSS 140 (593)
Q Consensus 91 ln--~~~i~g~~i~v~~s~~-----~-----~--------------~~~~~~~~~lfV~nLp~~~t~~~L~~----~f~~ 140 (593)
|+ ...++...+.+.|-.- . . -..+...+.|.|.-- ..++.+++.+ ++..
T Consensus 88 LsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~ 166 (309)
T PF10567_consen 88 LSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKN 166 (309)
T ss_pred HHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhcc
Confidence 32 1335566666654321 0 0 011223344544432 3443443332 2222
Q ss_pred cc----ceEEEEEeeC---CCCCceeEEEEEEcCHHHHHHHHHHhC
Q 007673 141 FG----NILSCKIATD---GSGQSKGFGFVQFENKESAQNAIDKLN 179 (593)
Q Consensus 141 ~G----~i~~~~i~~~---~~g~s~g~afV~F~~~e~A~~Al~~l~ 179 (593)
-+ -++++.++.. .....+.||.++|-+...|.+.+..+.
T Consensus 167 ~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 167 SNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 23 3677777765 244567799999999999999998775
No 193
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.18 E-value=0.12 Score=44.47 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=55.4
Q ss_pred ccccceeeeccCCCCCC-HHHH---HHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeE
Q 007673 308 KFQGLNLYIKNLGDSID-DEKL---KELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~-~~~l---~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~ 383 (593)
.++..+|.|+-|..+.. .+|| -..++.||.|.+|.+.- +..|.|.|.+..+|-+|+.+++. ..-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 44566788876655543 2444 44568899999998754 44699999999999999999887 55677788
Q ss_pred EEeccc
Q 007673 384 VAVAQR 389 (593)
Q Consensus 384 v~~~~~ 389 (593)
.+|-++
T Consensus 156 CsWqqr 161 (166)
T PF15023_consen 156 CSWQQR 161 (166)
T ss_pred eecccc
Confidence 877653
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.17 E-value=0.08 Score=48.88 Aligned_cols=61 Identities=28% Similarity=0.330 Sum_probs=46.6
Q ss_pred CHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceecCeeeEEEeccc
Q 007673 324 DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYVAVAQR 389 (593)
Q Consensus 324 ~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~--~~~~~~~~l~v~~~~~ 389 (593)
..+.|+++|..|+.+.+...++. -+-..|.|.+.++|.+|...++ +..+.|+.++|.|++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34789999999999998877764 4568999999999999999999 9999999999998853
No 195
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.14 E-value=0.17 Score=39.55 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=41.6
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG 374 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~ 374 (593)
..||. .|..|...||.++|+.||.| .|..+.|. -|||.....+.|..|+..++-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT------EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC------cEEEEeecHHHHHHHHHHhcc
Confidence 45565 99999999999999999997 46666663 599999999999999988753
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.09 E-value=0.047 Score=50.27 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=46.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhc-cCCe---EEEEEEeeCCC-C-CcccEEEEEecCHHHHHHHHHhcCCcccC
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQ-VGQV---LSVRVCRDLST-R-RSLGYGYVNYANPADAARALDVLNFTPLN 97 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~-~G~V---~~i~v~~d~~t-~-~s~g~AfV~F~s~e~A~~Al~~ln~~~i~ 97 (593)
....|.|+.||+.+||+++.+.++. ++.. ..+.-+.+... . ....-|||.|.+.+++....+.+++..|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4569999999999999999998877 6655 33432222211 1 12246999999999999999999887663
No 197
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.94 E-value=0.95 Score=38.00 Aligned_cols=75 Identities=12% Similarity=0.187 Sum_probs=52.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhcc-CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC---cEEEEe
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQV-GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN---KSIRIM 104 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~-G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g---~~i~v~ 104 (593)
+..+.+...|+-++-++|..+.+.+ ..|..++|.||... ++--+.+.|.+.++|......+||..|+. ..++|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC--ceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 3344444445555666676666665 46889999998664 44578999999999999999999887743 445443
Q ss_pred e
Q 007673 105 Y 105 (593)
Q Consensus 105 ~ 105 (593)
|
T Consensus 91 f 91 (110)
T PF07576_consen 91 F 91 (110)
T ss_pred E
Confidence 3
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.71 E-value=0.032 Score=55.09 Aligned_cols=78 Identities=22% Similarity=0.404 Sum_probs=61.0
Q ss_pred ceeeeccCCCCCCHHHHHH---HhhcCCCeeEEEEeeCCC--CC--CccEEEEEeCCHHHHHHHHHHhCCceecCeeeEE
Q 007673 312 LNLYIKNLGDSIDDEKLKE---LFSEFGTITSCKVMRDPS--GI--SKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~---~F~~~G~i~~v~i~~~~~--g~--~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v 384 (593)
.-+||-+|+..+.++.+.+ .|.+||.|.+|.+..+.. .. ...-++|+|...++|..||...+|...+|+.|..
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4588889998876666544 889999999998887652 11 1223799999999999999999999999998777
Q ss_pred Eeccc
Q 007673 385 AVAQR 389 (593)
Q Consensus 385 ~~~~~ 389 (593)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 76654
No 199
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.66 E-value=0.039 Score=56.53 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=65.6
Q ss_pred CCCccEEEEeCCCCCC-CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 26 QFLTTSLYVGDLDFNV-TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~-te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
..+.++|-+.-.|... +-++|...|.+||.|..|.|-.. .--|.|+|.+..+|-+|-. ..+..|+++.|++.
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLF 441 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEE
Confidence 4567888888888776 77889999999999999988543 2258999999999988777 68889999999999
Q ss_pred eccCCC
Q 007673 105 YSHRDP 110 (593)
Q Consensus 105 ~s~~~~ 110 (593)
|.+..+
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 998754
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.37 E-value=0.17 Score=46.70 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=46.8
Q ss_pred CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC--CcccCCcEEEEeeccCC
Q 007673 42 TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN--FTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 42 te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln--~~~i~g~~i~v~~s~~~ 109 (593)
..+.|+++|..++.+.++.+.+ +.+=..|.|.+.++|.+|...|+ +..+.|..+++.|....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999998887775 45568999999999999999999 88999999999998543
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.23 E-value=0.041 Score=54.34 Aligned_cols=88 Identities=18% Similarity=0.265 Sum_probs=66.0
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHH-HH--HHHhccCCeEEEEEEeeCCC---CCcccEEEEEecCHHHHHHHHHhcCCc
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQ-LY--DLFSQVGQVLSVRVCRDLST---RRSLGYGYVNYANPADAARALDVLNFT 94 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~-L~--~~F~~~G~V~~i~v~~d~~t---~~s~g~AfV~F~s~e~A~~Al~~ln~~ 94 (593)
.++.-.-...-+||-+|+.....+. |. +.|.+||.|.+|.+.++... .....-+||.|...++|.+||...++.
T Consensus 69 ls~~rvVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 69 LSGVRVVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred cccchhhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH
Confidence 3444444557789999998765444 43 37999999999999987631 112234899999999999999999999
Q ss_pred ccCCcEEEEeeccC
Q 007673 95 PLNNKSIRIMYSHR 108 (593)
Q Consensus 95 ~i~g~~i~v~~s~~ 108 (593)
.+.|+.++..+...
T Consensus 149 ~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 149 VDDGRALKASLGTT 162 (327)
T ss_pred HhhhhhhHHhhCCC
Confidence 99999987765443
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.27 E-value=0.32 Score=51.06 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCcccCCcEEEEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhcc--ccceEEEEEeeCCCCCceeE
Q 007673 83 DAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS--FGNILSCKIATDGSGQSKGF 160 (593)
Q Consensus 83 ~A~~Al~~ln~~~i~g~~i~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~--~G~i~~~~i~~~~~g~s~g~ 160 (593)
--.++|.+.-+..++.+-.+|...+ ..+.|.|+.||.+...++++.+|+. +-.+.+|.+..+. -
T Consensus 149 LI~Evlresp~VqvDekgekVrp~~--------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n 214 (684)
T KOG2591|consen 149 LIVEVLRESPNVQVDEKGEKVRPNH--------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N 214 (684)
T ss_pred HHHHHHhcCCCceeccCccccccCc--------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c
Confidence 3344555555555666655554332 3456889999999999999999975 6678899987652 2
Q ss_pred EEEEEcCHHHHHHHHHHhC
Q 007673 161 GFVQFENKESAQNAIDKLN 179 (593)
Q Consensus 161 afV~F~~~e~A~~Al~~l~ 179 (593)
.||+|+++.||..|.+.|.
T Consensus 215 WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 215 WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred eEEEeecchhHHHHHHHHH
Confidence 5999999999999998764
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.55 E-value=0.47 Score=49.84 Aligned_cols=71 Identities=17% Similarity=0.369 Sum_probs=56.2
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhc--CCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceecCeeeEEE
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSE--FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYVA 385 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~--~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~--~~~~~~~l~v~ 385 (593)
..|.+.++-|+..+-.|+++.+|.. +-.+.+|..-.+.+ =||+|++..||+.|.+.|.. +.|-||+|...
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n------WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN------WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 3456889999999999999999975 66788888766532 59999999999999998743 46777777554
Q ss_pred e
Q 007673 386 V 386 (593)
Q Consensus 386 ~ 386 (593)
+
T Consensus 248 I 248 (684)
T KOG2591|consen 248 I 248 (684)
T ss_pred h
Confidence 3
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.48 E-value=0.11 Score=53.45 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=58.7
Q ss_pred ceeeeccCCCCC-CHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 312 LNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 312 ~~l~V~nl~~~~-~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
+.|-+.-.+... +.++|..+|.+||+|..|.+-.. .--|.|+|.+..+|.+|.. .++..|+++.|+|.|....
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecCC
Confidence 345555555543 56889999999999999987554 3369999999999988886 8999999999999998753
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.43 E-value=0.68 Score=47.60 Aligned_cols=68 Identities=21% Similarity=0.249 Sum_probs=59.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN 98 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g 98 (593)
++.|.|--+|.-+|-.||..|+..+- .|.+|+++||....+ --+.|.|.+.++|....+++|+..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnr--ymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNR--YMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCce--EEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 88999999999999999999988764 799999999866443 478999999999999999999888754
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.41 E-value=0.66 Score=34.88 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 39 FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 39 ~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
..++-++++..++.|+.. .|+ .|+ .|| ||.|.+.++|++|....++..+-+..+.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~I~--~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-RIR--DDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CCccHHHHHHHHhcCCcc-eEE--ecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 457889999999999643 443 332 266 9999999999999999887777665543
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.05 E-value=0.14 Score=56.24 Aligned_cols=74 Identities=27% Similarity=0.338 Sum_probs=63.0
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc--CCcEEEEeeccC
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL--NNKSIRIMYSHR 108 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i--~g~~i~v~~s~~ 108 (593)
..++.|.+-..+-.-|..+|+.||.|.++|..||-. -|.|.|.+.+.|..|++.+.++++ -|-+.+|+++..
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445566667778888999999999999999988743 699999999999999999999875 688999999875
Q ss_pred CC
Q 007673 109 DP 110 (593)
Q Consensus 109 ~~ 110 (593)
-+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 43
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.91 E-value=6.7 Score=38.40 Aligned_cols=182 Identities=14% Similarity=0.219 Sum_probs=109.9
Q ss_pred ccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC--------CCCcceeEEEEeCCHHHHHHHHHH----HCC--Cc
Q 007673 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG--------DGKSKCFGFVNFENADDAAKAVEA----LNG--KK 273 (593)
Q Consensus 208 ~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~--------~g~~~g~afV~F~~~e~A~~Ai~~----l~g--~~ 273 (593)
.+.|.+.|+..+++-..+...|-+||.|++|.++.+. +.+......+.|-+.+.+..-... +.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3568889999999999999999999999999998765 234456788999998887765332 222 23
Q ss_pred cCCceEEEeccccchHH-----HHHHhh--hHHhhhh-hhhcccccceeeeccCCCCCCHHH-HHHHh---hcCC----C
Q 007673 274 FDDREWYVGKAQKKSER-----EQELKG--QFEQAMK-ETVDKFQGLNLYIKNLGDSIDDEK-LKELF---SEFG----T 337 (593)
Q Consensus 274 ~~~~~l~v~~a~~~~~~-----~~~~~~--~~~~~~~-~~~~~~~~~~l~V~nl~~~~~~~~-l~~~F---~~~G----~ 337 (593)
+....|.+.+..-+... ..+... ....... +-....-.++|.|.-- ..++.++ +.+.+ ..=+ .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceEE
Confidence 56666776665421110 000000 0000111 1122233456666543 3443333 33322 1112 4
Q ss_pred eeEEEEeeCC---CCCCccEEEEEeCCHHHHHHHHHHhC--Cceec-CeeeEEEeccch
Q 007673 338 ITSCKVMRDP---SGISKGSGFVAFSTPEEASRALAEMN--GKMIV-SKPLYVAVAQRK 390 (593)
Q Consensus 338 i~~v~i~~~~---~g~~~g~afV~f~~~~~A~~A~~~~~--~~~~~-~~~l~v~~~~~~ 390 (593)
+++|.++... +.-++.||.++|-+...|...+.-+. +...+ .+...|++....
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~~~ 232 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQPHA 232 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccCcc
Confidence 6778887643 34467899999999999999888765 44433 566777766543
No 209
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.76 E-value=0.98 Score=34.96 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHhhcCCC-----eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 320 GDSIDDEKLKELFSEFGT-----ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 320 ~~~~~~~~l~~~F~~~G~-----i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
-+.++..+|..++..-+. |-.|+|..+ |.||+-.. +.|..+++.|++..+.|+++.|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 356778888888876643 556777666 89999866 6899999999999999999999865
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.10 E-value=1.6 Score=32.87 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=44.3
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEE
Q 007673 322 SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (593)
Q Consensus 322 ~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v 384 (593)
.++-++++..+..|+-. +|..|.+| -||.|.+..+|.++....+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 57889999999999642 34455554 589999999999999999999988877654
No 211
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.77 E-value=0.95 Score=41.67 Aligned_cols=68 Identities=12% Similarity=0.251 Sum_probs=45.2
Q ss_pred CccEEEeCCCcccCHHHHHhhhcc-ccceE---EEE--EeeCCC-CCceeEEEEEEcCHHHHHHHHHHhCCceec
Q 007673 117 TGNIFIKNLDKSIDHKALHDTFSS-FGNIL---SCK--IATDGS-GQSKGFGFVQFENKESAQNAIDKLNGMLIN 184 (593)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~f~~-~G~i~---~~~--i~~~~~-g~s~g~afV~F~~~e~A~~Al~~l~g~~~~ 184 (593)
...|.|++||+++|++++.+.++. ++.-. .+. ...... .....-|||.|.+.++.......++|+.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 457999999999999999998887 66552 222 111111 112345999999999999999999987664
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.78 E-value=1.4 Score=42.86 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=49.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
..=|-|-++|+.- -..|..+|++||.|++...- +.-.+-+|.|.+.-+|.+||. .|+..|+|..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 4456777887553 46788899999999877543 222489999999999999999 58888887544
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.53 E-value=0.42 Score=52.76 Aligned_cols=72 Identities=28% Similarity=0.413 Sum_probs=63.0
Q ss_pred eeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--cCeeeEEEeccch
Q 007673 314 LYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAVAQRK 390 (593)
Q Consensus 314 l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~--~~~~l~v~~~~~~ 390 (593)
.++.|.+-..+..-|..+|++||.|.+++.+++-+ .|.|.|.+.+.|-.|..+++|+.+ .|-+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 56677778889999999999999999999888743 699999999999999999999976 5788999988754
No 214
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.06 E-value=3.8 Score=34.41 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=50.0
Q ss_pred eeeccCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 007673 314 LYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (593)
Q Consensus 314 l~V~nl~~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 379 (593)
+.+-..|..++.++|..+.+.+- .|..++|++|... .+--+.+.|.+.++|......+||+.++.
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~p-nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP-NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCC-ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44455566677778877777765 4777899888432 46678999999999999999999998864
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.71 E-value=0.85 Score=36.42 Aligned_cols=66 Identities=15% Similarity=0.314 Sum_probs=45.6
Q ss_pred EEEEecCHHHHHHHHHhcCCc-ccCCcEEEEeecc--CCC-----CCCCCCCccEEEeCCCcccCHHHHHhhhc
Q 007673 74 GYVNYANPADAARALDVLNFT-PLNNKSIRIMYSH--RDP-----SIRKSGTGNIFIKNLDKSIDHKALHDTFS 139 (593)
Q Consensus 74 AfV~F~s~e~A~~Al~~ln~~-~i~g~~i~v~~s~--~~~-----~~~~~~~~~lfV~nLp~~~t~~~L~~~f~ 139 (593)
|.|+|.+..-|++.+..-.+. .+++..++|.-+. ... -......++|.|.|||...++++|++.+.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999854433 3556666554322 111 11233566899999999999999997643
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.67 E-value=0.17 Score=54.32 Aligned_cols=114 Identities=14% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
...+-++.-++||||+-.-+.++-+..+...+|-|.+.+... |+|..|....-+.+|+..++...++|..+
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl 103 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKL 103 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchh
Confidence 444566788999999999999999999999999998775433 89999999999999999888888888776
Q ss_pred EEeecc-----CCC-----------CCCCCCCccEEEeCCCcccCHHHHHhhhccccce
Q 007673 102 RIMYSH-----RDP-----------SIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNI 144 (593)
Q Consensus 102 ~v~~s~-----~~~-----------~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i 144 (593)
-+.... .+. -...+.....+|.+++...+.......+...+..
T Consensus 104 ~~~~d~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~ 162 (668)
T KOG2253|consen 104 IENVDEQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSA 162 (668)
T ss_pred hccchhhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchh
Confidence 554311 000 0111123345677777666665555555544443
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.54 E-value=2.5 Score=32.66 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHhccC-----CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 39 FNVTDSQLYDLFSQVG-----QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 39 ~~~te~~L~~~F~~~G-----~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
..++..+|..++...+ .|-.|+|..+ |+||+-... .|+++++.|++..++|++++|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 3577888888877663 5778888764 889988765 88999999999999999999874
No 218
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=85.83 E-value=0.051 Score=58.17 Aligned_cols=71 Identities=24% Similarity=0.286 Sum_probs=61.9
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a 284 (593)
....++||+|+...++.+-++.+...+|.|.++.... |||..|..+.....|+..++...+++..+.+..-
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3456799999999999999999999999998876443 9999999999999999999999998888877664
No 219
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=85.73 E-value=1.5 Score=42.81 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=48.6
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeee
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l 382 (593)
..|-|-+++..-. .-|..+|++||+|.+.... .+ -.+-.|.|.+.-+|.+|+. .||++|+|..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~n---gNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SN---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CC---CceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 3567777776544 4577889999999876443 22 3489999999999999998 89998887543
No 220
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.22 E-value=3.5 Score=42.59 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=58.4
Q ss_pred CccEEEeCCCcccCHHHHHhhhcccc-ceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecC
Q 007673 117 TGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIND 185 (593)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g 185 (593)
...|+|-.+|..++..||..+...+- .|.++++++|..+ ++-...+.|.+.++|....+.+||..++.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 67899999999999999999987654 6899999997544 45568899999999999999999988764
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.16 E-value=8.5 Score=41.14 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=62.4
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHhcc----CCeEEEEEEeeC----------CCCC---------------------
Q 007673 26 QFLTTSLYVGDLDFN-VTDSQLYDLFSQV----GQVLSVRVCRDL----------STRR--------------------- 69 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~-~te~~L~~~F~~~----G~V~~i~v~~d~----------~t~~--------------------- 69 (593)
...++.|-|-||.|+ +.-.+|+-+|+.| |.|.+|.||... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456899999999988 6889999999987 689999998631 1111
Q ss_pred ----------------cccEEEEEecCHHHHHHHHHhcCCcccCC--cEEEEeec
Q 007673 70 ----------------SLGYGYVNYANPADAARALDVLNFTPLNN--KSIRIMYS 106 (593)
Q Consensus 70 ----------------s~g~AfV~F~s~e~A~~Al~~ln~~~i~g--~~i~v~~s 106 (593)
---||.|+|.+.+.|....+.|.|..|.. ..+.+.|-
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 12489999999999999999999988854 44444443
No 222
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.06 E-value=20 Score=37.49 Aligned_cols=13 Identities=15% Similarity=0.498 Sum_probs=6.3
Q ss_pred eEEEEeCCHHHHH
Q 007673 251 FGFVNFENADDAA 263 (593)
Q Consensus 251 ~afV~F~~~e~A~ 263 (593)
|-.|.|.+.+.+.
T Consensus 261 ~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 261 YYVVRFNSEEEIS 273 (483)
T ss_pred eEEEecCchhhhh
Confidence 3445555554443
No 223
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=71.84 E-value=2.9 Score=33.46 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=43.8
Q ss_pred EEEEEcCHHHHHHHHHHhCC-ceecCeeEE--eccccchhhhH-HHHhhccccceeccCCCCCCCHHHHHHhhc
Q 007673 161 GFVQFENKESAQNAIDKLNG-MLINDKQVF--VGHFLRKQERE-TVAIKTKFNNVFVKNLDESTTDEDLKKIFG 230 (593)
Q Consensus 161 afV~F~~~e~A~~Al~~l~g-~~~~g~~l~--v~~~~~~~~~~-~~~~~~~~~~l~V~nlp~~~te~~l~~~F~ 230 (593)
|+|+|..+.-|.+.++.-.. ..+++..+. +.+.....-.+ ........++|.|+|+|...++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999964221 234444443 33333221110 011123457799999999999999988764
No 224
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.54 E-value=30 Score=34.77 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=16.3
Q ss_pred HHHHhhCChHHHHHHHHHHHHHHHH
Q 007673 545 EVLHLLESPEALKAKVAEAMEVLRS 569 (593)
Q Consensus 545 ~~~~~~~~~~~l~~~v~~a~~~l~~ 569 (593)
++..|=++-+.|+.||+||++=++.
T Consensus 261 q~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 261 QLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 4566666777777777776554443
No 225
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.09 E-value=8.4 Score=34.27 Aligned_cols=116 Identities=14% Similarity=-0.017 Sum_probs=74.6
Q ss_pred EEEEeCCC--CCCCHHHHHHHHhc-cCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 31 SLYVGDLD--FNVTDSQLYDLFSQ-VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 31 sL~V~nLp--~~~te~~L~~~F~~-~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
...||.+- .+.+-..|.+.+.. ++....+.+..- ..++..+.|.+.+|+.++++ ...-.++|..+.+..-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 34455553 34667777776665 344334444331 22689999999999999998 45556788777776433
Q ss_pred CCCCCCCC----CCccEEEeCCCcc-cCHHHHHhhhccccceEEEEEeeC
Q 007673 108 RDPSIRKS----GTGNIFIKNLDKS-IDHKALHDTFSSFGNILSCKIATD 152 (593)
Q Consensus 108 ~~~~~~~~----~~~~lfV~nLp~~-~t~~~L~~~f~~~G~i~~~~i~~~ 152 (593)
.+...... -..=|.|.|||.. .+++-|..+.+.+|.+..+...+.
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 22111111 1222668999987 477888899999999988766543
No 226
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.69 E-value=16 Score=39.22 Aligned_cols=78 Identities=24% Similarity=0.259 Sum_probs=60.7
Q ss_pred ccceeeeccCCCC-CCHHHHHHHhhcC----CCeeEEEEeeCCC-----------CC-----------------------
Q 007673 310 QGLNLYIKNLGDS-IDDEKLKELFSEF----GTITSCKVMRDPS-----------GI----------------------- 350 (593)
Q Consensus 310 ~~~~l~V~nl~~~-~~~~~l~~~F~~~----G~i~~v~i~~~~~-----------g~----------------------- 350 (593)
....|-|=|++|+ +..++|.-+|..| |.|.+|.|....- |.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 4567999999985 7899999999876 6899999976541 22
Q ss_pred -------------Cc-cEEEEEeCCHHHHHHHHHHhCCceecC--eeeEEEec
Q 007673 351 -------------SK-GSGFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVA 387 (593)
Q Consensus 351 -------------~~-g~afV~f~~~~~A~~A~~~~~~~~~~~--~~l~v~~~ 387 (593)
.+ =||.|+|.+.+.|.+......|..+.. ..|.+.|.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 11 268999999999999999999999975 44555554
No 227
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=65.05 E-value=4.8 Score=36.43 Aligned_cols=75 Identities=24% Similarity=0.372 Sum_probs=54.9
Q ss_pred ccEEEEeCCCCCC-CHHHH----HHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCc-EEE
Q 007673 29 TTSLYVGDLDFNV-TDSQL----YDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK-SIR 102 (593)
Q Consensus 29 ~~sL~V~nLp~~~-te~~L----~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~-~i~ 102 (593)
.+++.+-+++..+ ++.+. ..+|..|.+..-.++.| +.+.--|+|.+++.|..|.-.++...|.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3567888888665 33332 34666666655555543 455678999999999999999999999998 888
Q ss_pred EeeccCC
Q 007673 103 IMYSHRD 109 (593)
Q Consensus 103 v~~s~~~ 109 (593)
..++++.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8887753
No 228
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=59.47 E-value=18 Score=35.17 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=41.1
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHH
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPAD 83 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~ 83 (593)
++......+-|||+||+.++--.||+.-+.+.| .-.+|...- ..|-||+.|.+...
T Consensus 323 ~g~~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg------~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 323 SGVEAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG------HFGKCFLHFGNRKG 379 (396)
T ss_pred CcccCccccceeeccCccccchHHHHHHHHhcCCCceeEeeec------CCcceeEecCCccC
Confidence 444445567799999999999999999998876 334554432 34679999987543
No 229
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.24 E-value=35 Score=27.09 Aligned_cols=58 Identities=17% Similarity=0.077 Sum_probs=46.2
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQ-VG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l 91 (593)
.-|+-..+.+++-.+|.+.++. || +|.+|+.+.-+.. .-=|||.+....+|......+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHhh
Confidence 4566778899999999999987 55 8999998876532 236999999999998876654
No 230
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=57.64 E-value=7 Score=34.78 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=57.9
Q ss_pred ceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchhhhHHHHhhccccceeccCCCCC-CCHHHHHHhhccCCCe
Q 007673 157 SKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDES-TTDEDLKKIFGEYGTI 235 (593)
Q Consensus 157 s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~te~~l~~~F~~~G~v 235 (593)
..++..++|.+.+++.++++. ....+++..+.+....+.............--|.|.|||.. ++++-+..+.+.+|.+
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~ 132 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEP 132 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCe
Confidence 457889999999999999853 44556677776665553332211111122234778999976 6778899999999998
Q ss_pred eEEEEee
Q 007673 236 TSAVVMR 242 (593)
Q Consensus 236 ~~v~i~~ 242 (593)
..+....
T Consensus 133 i~vD~~t 139 (153)
T PF14111_consen 133 IEVDENT 139 (153)
T ss_pred EEEEcCC
Confidence 8776543
No 231
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.44 E-value=33 Score=33.18 Aligned_cols=108 Identities=17% Similarity=0.288 Sum_probs=60.3
Q ss_pred cccCHHHHHhhhcccc---ceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchhhhHHHH
Q 007673 127 KSIDHKALHDTFSSFG---NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQERETVA 203 (593)
Q Consensus 127 ~~~t~~~L~~~f~~~G---~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~~~~~~~ 203 (593)
.++++-+|.+-+...- ...+|+|... ..-||.|+.+-.....+++. -..+.|..+.++-+..........
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckires------nid~iifeael~n~gimkk~-l~~ldgfsiklsgfad~lkvka~e 119 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRES------NIDFIIFEAELENKGIMKKF-LACLDGFSIKLSGFADILKVKAAE 119 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeeccc------ccceEEeeHhhhhhhHHHHH-HHHhcCCeeeecccchHHhhhHHh
Confidence 3567777776654321 3456777543 35688888665544333221 112334444444333222211111
Q ss_pred h-------------------------hccccceeccCCCCC------------CCHHHHHHhhccCCCeeEEEEe
Q 007673 204 I-------------------------KTKFNNVFVKNLDES------------TTDEDLKKIFGEYGTITSAVVM 241 (593)
Q Consensus 204 ~-------------------------~~~~~~l~V~nlp~~------------~te~~l~~~F~~~G~v~~v~i~ 241 (593)
. .....+|++.++|.. .+++.|+..|+.||.|..|.+.
T Consensus 120 akidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 120 AKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred hcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 0 112346888887743 3678899999999999988875
No 232
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.50 E-value=23 Score=36.15 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=50.4
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCC-eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeee
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l 382 (593)
..|-|.++|....-+||...|+.|+. -.+|+++.|. .+|-.|.+...|..|+.. ..-++.-|+|
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt~-kh~~lKiRpL 456 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALTL-KHDWLKIRPL 456 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhhc-cCceEEeeeh
Confidence 35889999999999999999999975 4567777764 599999999999999983 4444444444
No 233
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.06 E-value=3 Score=42.79 Aligned_cols=80 Identities=9% Similarity=0.003 Sum_probs=65.5
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchH
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~ 391 (593)
..++..++.+.+++++.-+|..||.|..+.+-+.. .|...-.+||+-.+ .+|..+|..+.-..+.|..++++++...-
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 46788899999999999999999999888775543 45567788998876 66888898888888899999999987654
Q ss_pred HH
Q 007673 392 ER 393 (593)
Q Consensus 392 ~r 393 (593)
..
T Consensus 84 ~~ 85 (572)
T KOG4365|consen 84 EK 85 (572)
T ss_pred hh
Confidence 43
No 234
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.71 E-value=29 Score=36.29 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=7.2
Q ss_pred EEeCCHHHHHHHHHHh
Q 007673 357 VAFSTPEEASRALAEM 372 (593)
Q Consensus 357 V~f~~~~~A~~A~~~~ 372 (593)
+.|.+ ++++++.+.+
T Consensus 319 ~dfSD-DEkEaeak~~ 333 (483)
T KOG2236|consen 319 QDFSD-DEKEAEAKQM 333 (483)
T ss_pred hccch-HHHHHHHHHH
Confidence 55654 3444444444
No 235
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=53.16 E-value=8.5 Score=34.90 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=49.7
Q ss_pred eeeeccCCCCCC-----HHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe-eeEEEe
Q 007673 313 NLYIKNLGDSID-----DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYVAV 386 (593)
Q Consensus 313 ~l~V~nl~~~~~-----~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-~l~v~~ 386 (593)
++.+-+++..+- ......+|..|.+....++++ +.++.-|.|.+.+.|..|..++++..|.|+ .+..-+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 345555554332 233445666665555444444 355778999999999999999999999998 788777
Q ss_pred ccc
Q 007673 387 AQR 389 (593)
Q Consensus 387 ~~~ 389 (593)
++.
T Consensus 87 aQ~ 89 (193)
T KOG4019|consen 87 AQP 89 (193)
T ss_pred ccC
Confidence 764
No 236
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=51.77 E-value=59 Score=25.34 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=45.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQ-VG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l 91 (593)
.-|+-..+.+++-.+|++.++. || +|.+|+.+.-+.. .-=|||.+...++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHhh
Confidence 4677788999999999998887 45 8888888776532 236999999999988876544
No 237
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.22 E-value=33 Score=25.38 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=15.6
Q ss_pred HHHHHHhhcCCCeeEEEEe
Q 007673 326 EKLKELFSEFGTITSCKVM 344 (593)
Q Consensus 326 ~~l~~~F~~~G~i~~v~i~ 344 (593)
.+||++|+..|.|.-+-+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999766553
No 238
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.15 E-value=29 Score=35.44 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=46.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcc
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP 95 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~ 95 (593)
--.|-|.|+|.....+||...|+.|+ .=-.|+.+.|. .||-.|.+...|..||. +.+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt-~kh~~ 450 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT-LKHDW 450 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh-ccCce
Confidence 35788999999999999999999986 33456666663 68999999999999998 44433
No 239
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.03 E-value=60 Score=25.76 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=44.1
Q ss_pred eeeeccCCCCCCHHHHHHHhhc-CC-CeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHH
Q 007673 313 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 371 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 371 (593)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-..| ..-|||.+...++|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~--~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG--EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--cEEEEEEeCCCCcHHHHHHh
Confidence 4677778889999999999987 66 5788877665433 44699999998888876554
No 240
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=45.29 E-value=75 Score=26.57 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=60.3
Q ss_pred CCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc--ccCCcEEEEeeccCCCCCCC
Q 007673 37 LDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT--PLNNKSIRIMYSHRDPSIRK 114 (593)
Q Consensus 37 Lp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~--~i~g~~i~v~~s~~~~~~~~ 114 (593)
||+-+ ..|-+.|+.=|+|.+|.....-.+ ..|+-.+++. .++|+ |+|-.....
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqypd-----------------ndal~~~~G~lE~vDg~-i~IGs~q~~----- 65 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYPD-----------------NDALLYVHGTLEQVDGN-IRIGSGQTP----- 65 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccCC-----------------chhhheeeeehhhccCc-EEEccCCCc-----
Confidence 55544 358899999999999866543211 2333334433 24565 777544322
Q ss_pred CCCccEEEeC---------CCcccCHHHHHhhhcc---ccceEEEEEeeC--CCCCceeEEEEEEcCH
Q 007673 115 SGTGNIFIKN---------LDKSIDHKALHDTFSS---FGNILSCKIATD--GSGQSKGFGFVQFENK 168 (593)
Q Consensus 115 ~~~~~lfV~n---------Lp~~~t~~~L~~~f~~---~G~i~~~~i~~~--~~g~s~g~afV~F~~~ 168 (593)
..|.|.+ -|.++|..+|+++|+. |-.|..-.+..| +.| +-..||.-|...
T Consensus 66 ---~sV~i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~G-sYRiCFrL~~~~ 129 (145)
T TIGR02542 66 ---ASVRIQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEG-SYRICFRLFNAT 129 (145)
T ss_pred ---ccEEEecCCCCCceecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCC-ceEEEEEEeccc
Confidence 2233332 3567899999999985 444544445555 333 445677777654
No 241
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=45.19 E-value=72 Score=24.87 Aligned_cols=58 Identities=12% Similarity=0.244 Sum_probs=44.2
Q ss_pred eeeeccCCCCCCHHHHHHHhhc-CC-CeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 007673 313 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM 372 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~ 372 (593)
+-|+-.++.+.+..+|++.++. || .|.+|..+.-..+ ..-|||.+...+.|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC--ceEEEEEECCCCcHHHHHHhh
Confidence 5677788999999999999987 56 5778876655433 446999999888888765543
No 242
>PHA03378 EBNA-3B; Provisional
Probab=42.77 E-value=2.7e+02 Score=31.04 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=6.9
Q ss_pred cceeeeccCCCC
Q 007673 311 GLNLYIKNLGDS 322 (593)
Q Consensus 311 ~~~l~V~nl~~~ 322 (593)
.-|||-..|+-+
T Consensus 538 ~pcvy~~~l~ie 549 (991)
T PHA03378 538 APCVYTEDLDIE 549 (991)
T ss_pred CCceeecccCcc
Confidence 345777666533
No 243
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.91 E-value=70 Score=24.23 Aligned_cols=63 Identities=10% Similarity=0.234 Sum_probs=47.3
Q ss_pred HHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 44 SQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 44 ~~L~~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
++|.+-|...| +|.+|.-++...++....--||+.....+...++ +=..+.+..++|++....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46778888888 8999988888877777778888888877644433 335578889999876543
No 244
>PRK11901 hypothetical protein; Reviewed
Probab=39.90 E-value=91 Score=31.39 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=43.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEE--EecCHHHHHHHHHhcCCcccCC
Q 007673 32 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYV--NYANPADAARALDVLNFTPLNN 98 (593)
Q Consensus 32 L~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV--~F~s~e~A~~Al~~ln~~~i~g 98 (593)
-|.--|-..-.++.|..|.++++ +..++|.+..+.|+. .|..| .|.+.++|..|+..|-...-..
T Consensus 245 ~YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~lqa~ 311 (327)
T PRK11901 245 HYTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEVQAK 311 (327)
T ss_pred CeEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHHHhC
Confidence 34334444456888999988885 466777776665554 34433 5899999999999987444333
No 245
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.99 E-value=31 Score=35.24 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=43.7
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEE-eeCCCC-CcccEEEEEecCHHHHHHHHHhcCCc
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVC-RDLSTR-RSLGYGYVNYANPADAARALDVLNFT 94 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G-~V~~i~v~-~d~~t~-~s~g~AfV~F~s~e~A~~Al~~ln~~ 94 (593)
-..+.|..||+..++.+|.+....+- .|....+. -+.... .-.+.|||+|.+.++.......+++.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 45789999999999999998887763 22222222 111111 12368999999999976666655543
No 246
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=37.47 E-value=73 Score=24.15 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=47.2
Q ss_pred HHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccC
Q 007673 44 SQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (593)
Q Consensus 44 ~~L~~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~ 108 (593)
++|.+-|..+| +|..|+-++...++....-=+|+.....+-.. -++-..+.|..+.|+..++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46788889988 89999999888877777777888877765555 3444567888898886554
No 247
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=35.07 E-value=50 Score=28.02 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=26.0
Q ss_pred CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHH
Q 007673 42 TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADA 84 (593)
Q Consensus 42 te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A 84 (593)
+-++|.+.|+.|.++ .++.+.+.. -.+|++.|.|.+.-..
T Consensus 30 ~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 30 SNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHH
T ss_pred CHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHH
Confidence 557899999999887 477777654 4568999999876443
No 248
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=34.83 E-value=45 Score=28.33 Aligned_cols=40 Identities=25% Similarity=0.445 Sum_probs=25.0
Q ss_pred cCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHH
Q 007673 129 IDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKES 170 (593)
Q Consensus 129 ~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~ 170 (593)
.+.++|.+.|+.|..+. ++...+..| +.|+++|.|.+.-.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~g-h~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQG-HTGFAIVEFNKDWS 68 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTE-EEEEEEEE--SSHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCC-CcEEEEEEECCChH
Confidence 36789999999998774 555555554 78999999997654
No 249
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=33.84 E-value=1.8e+02 Score=30.06 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=32.3
Q ss_pred CCCccEEEEeCCCCC-CCHHHHHHHHhcc----CCeEEEEEEee
Q 007673 26 QFLTTSLYVGDLDFN-VTDSQLYDLFSQV----GQVLSVRVCRD 64 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~-~te~~L~~~F~~~----G~V~~i~v~~d 64 (593)
..++..|-|-||.|+ +.-.+|+-+|+.| |++..|.|+..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 456789999999987 6888999999987 68888888763
No 250
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=33.65 E-value=75 Score=23.54 Aligned_cols=19 Identities=21% Similarity=0.506 Sum_probs=15.8
Q ss_pred HHHHHhhccCCCeeEEEEe
Q 007673 223 EDLKKIFGEYGTITSAVVM 241 (593)
Q Consensus 223 ~~l~~~F~~~G~v~~v~i~ 241 (593)
.+|+++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998766654
No 251
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=33.44 E-value=52 Score=31.86 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=28.1
Q ss_pred ccceeeeccCCCC------------CCHHHHHHHhhcCCCeeEEEEee
Q 007673 310 QGLNLYIKNLGDS------------IDDEKLKELFSEFGTITSCKVMR 345 (593)
Q Consensus 310 ~~~~l~V~nl~~~------------~~~~~l~~~F~~~G~i~~v~i~~ 345 (593)
..-+||+.+||-. -+++.|+..|+.||.|..|.|..
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3457888888722 46788999999999999988753
No 252
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=30.53 E-value=4.1e+02 Score=27.69 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=10.5
Q ss_pred eeeccCCCCCCHHHHHHHhhcCC
Q 007673 314 LYIKNLGDSIDDEKLKELFSEFG 336 (593)
Q Consensus 314 l~V~nl~~~~~~~~l~~~F~~~G 336 (593)
+|+-+|+..-..+++-.-|+.=|
T Consensus 219 f~~p~l~~~g~~d~~ss~~ed~g 241 (487)
T KOG4672|consen 219 FRVPGLKPPGPPDGLSSNFEDSG 241 (487)
T ss_pred ccccCCCCCCCCccccCCCCCCC
Confidence 44445554444444444444433
No 253
>PF14893 PNMA: PNMA
Probab=29.54 E-value=72 Score=32.52 Aligned_cols=78 Identities=10% Similarity=0.110 Sum_probs=44.9
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEee--CCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQ-VGQVLSVRVCRD--LSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~-~G~V~~i~v~~d--~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
...++|.|.++|.++++++|.+.+.. +-+.-..+|... .+. ...-.|+|+|...-+-...=.+ +.-+|...+|
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~-~~~~aalve~~e~~n~~~iP~~---i~g~gg~W~V 91 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE-ENAKAALVEFAEDVNYSLIPRE---IPGKGGPWRV 91 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh-cccceeeeecccccchhhCchh---cCCCCCceEE
Confidence 34689999999999999999998765 223333333221 011 1223688888654332221111 2335677777
Q ss_pred eeccC
Q 007673 104 MYSHR 108 (593)
Q Consensus 104 ~~s~~ 108 (593)
.+-..
T Consensus 92 v~~p~ 96 (331)
T PF14893_consen 92 VFKPP 96 (331)
T ss_pred EecCC
Confidence 65443
No 254
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.88 E-value=41 Score=21.85 Aligned_cols=17 Identities=18% Similarity=0.540 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHhccCC
Q 007673 39 FNVTDSQLYDLFSQVGQ 55 (593)
Q Consensus 39 ~~~te~~L~~~F~~~G~ 55 (593)
.++++++|+++|.+++.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999998753
No 255
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=28.65 E-value=9.4 Score=40.61 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=53.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
-..++|+|+|+++.++-++|..+|+.+--+..+-+..+....+-.-..+|.|.-.-+-..|+..||+.-+....
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 45789999999999999999999999865555554444333334446789998777777777777765554433
No 256
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.13 E-value=67 Score=31.36 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=36.0
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcCCCe-eEEEEeeCCCCCCccEEEEEeCCHH
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPE 363 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~ 363 (593)
.+.||++||+.++--.||+..+.+-|-+ .++.+- | ..|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk----g-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK----G-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee----c-CCcceeEecCCcc
Confidence 4569999999999999999999887643 344332 2 3667999997643
No 257
>COG3266 DamX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.89 E-value=1.9e+02 Score=28.21 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=40.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEE--EEecCHHHHHHHHHhcCC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGY--VNYANPADAARALDVLNF 93 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~Af--V~F~s~e~A~~Al~~ln~ 93 (593)
.-+|-|.. .-+++.|-.|-++. ....+++....+.|+. .|.. =+|.+.++|.+|+++|--
T Consensus 211 ~yTLQl~a---~~s~~nv~~fa~k~-~l~~~~vy~t~rnG~p-WYvv~~G~YatrqeA~~AvstLPa 272 (292)
T COG3266 211 HYTLQLSA---SGSYDNVNGFAKKQ-NLKGYVVYETTRNGKP-WYVVVYGNYATRQEAKAAVSTLPA 272 (292)
T ss_pred ceEEEEec---ccchHHHHHHHHhc-CCCceEEeEeecCCce-eEEEEecCcccHHHHHHHHhhCcH
Confidence 34555543 45677888887777 3445777776666654 2433 368999999999998863
No 258
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.23 E-value=91 Score=28.40 Aligned_cols=53 Identities=32% Similarity=0.311 Sum_probs=36.6
Q ss_pred ceeeeccCCCCCCHHHHH---HHhhcCCCeeEEEEeeCCCC--CCccEEEEEeCCHHHHHHHHHH
Q 007673 312 LNLYIKNLGDSIDDEKLK---ELFSEFGTITSCKVMRDPSG--ISKGSGFVAFSTPEEASRALAE 371 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~---~~F~~~G~i~~v~i~~~~~g--~~~g~afV~f~~~~~A~~A~~~ 371 (593)
+++|.+ .|++.|. ++-+ |.+..+..-+..++ .-+|-.||+|.+.++|.+.++.
T Consensus 112 r~v~~K-----~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK-----ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc-----CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 356666 4554444 4444 77877776555444 5688999999999999887763
No 259
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=25.39 E-value=1e+02 Score=31.29 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=36.8
Q ss_pred EEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhcc
Q 007673 74 GYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSS 140 (593)
Q Consensus 74 AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~ 140 (593)
|||.|++.++|..|++.+... +++.+++..+.. ...|.=.||..+..+..++..+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APe--------P~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPE--------PDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCC--------cccccccccCCChHHHHHHHHHHH
Confidence 799999999999999965432 234445544332 234666777666666666655443
No 260
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.38 E-value=35 Score=35.09 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=53.8
Q ss_pred CCccEEEEeCCCCCCCHH--------HHHHHHhc--cCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q 007673 27 FLTTSLYVGDLDFNVTDS--------QLYDLFSQ--VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~--------~L~~~F~~--~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~ 89 (593)
...+.+|+.+.....+.+ ++...|.. .+++..|+..||.....+.|--|++|...+.|++++.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345788888888666555 89999998 7899999999998888899999999999999999885
No 261
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=25.09 E-value=4.3e+02 Score=27.99 Aligned_cols=13 Identities=8% Similarity=0.473 Sum_probs=5.9
Q ss_pred EeCCHHHHHHHHH
Q 007673 255 NFENADDAAKAVE 267 (593)
Q Consensus 255 ~F~~~e~A~~Ai~ 267 (593)
.|....+....+.
T Consensus 329 ~~Ds~K~~lEv~k 341 (654)
T COG5180 329 KFDSSKNLLEVIK 341 (654)
T ss_pred cccchhHHHHHHH
Confidence 3555444444443
No 262
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=24.00 E-value=2.3e+02 Score=23.91 Aligned_cols=47 Identities=15% Similarity=0.308 Sum_probs=30.3
Q ss_pred CCCCHHHHHHHHhc-cC----CeEEEEEEeeCCCCCcccEEEEEecCHHHHHH
Q 007673 39 FNVTDSQLYDLFSQ-VG----QVLSVRVCRDLSTRRSLGYGYVNYANPADAAR 86 (593)
Q Consensus 39 ~~~te~~L~~~F~~-~G----~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~ 86 (593)
..++.+||+|-+++ |- .|.-..+...-.++++.|||.| |.|.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 45789999997776 32 2222233334456799999977 677776665
No 263
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=23.61 E-value=90 Score=28.44 Aligned_cols=69 Identities=20% Similarity=0.142 Sum_probs=44.3
Q ss_pred ccEEEEeCCCCCCCHHHHHH---HHhccCCeEEEEEEeeCCC-CCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 29 TTSLYVGDLDFNVTDSQLYD---LFSQVGQVLSVRVCRDLST-RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~---~F~~~G~V~~i~v~~d~~t-~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.+++|.. .|++.|.+ +-+ |.+..|...+.... ..-+|-.||+|.+.+.|..++++- .......++..+
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~-e~~~~e~el~r~ 182 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTH-EEKGAETELKRS 182 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhh-hhhccchHHHHH
Confidence 3455554 44555444 334 78888877664332 256799999999999999988853 344444555544
Q ss_pred e
Q 007673 105 Y 105 (593)
Q Consensus 105 ~ 105 (593)
|
T Consensus 183 ~ 183 (205)
T KOG4213|consen 183 G 183 (205)
T ss_pred H
Confidence 4
No 264
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=22.01 E-value=24 Score=37.65 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=54.4
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeee
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPL 382 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l 382 (593)
...|+|++.|++..++-.+|..+++.+-.+..+-+-.+. .-.-..+++|+|+---.-..|+.+||+..+....+
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 356789999999999999999999998777665544332 11234578899987777777788888776654433
No 265
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=21.82 E-value=74 Score=37.39 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007673 437 PPAIIPPQMPPRGHAYRYPLGRNMQDFPF 465 (593)
Q Consensus 437 pp~~~pp~~~p~~~~~~~pp~~~~p~~~~ 465 (593)
||+.+||++||+|.- ||.+|||++++
T Consensus 5 ppg~ppppppppg~e---pps~pppPppP 30 (2365)
T COG5178 5 PPGNPPPPPPPPGFE---PPSQPPPPPPP 30 (2365)
T ss_pred CCCCCcccccCCCCC---CCCCCCCccCC
No 266
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.62 E-value=2.4e+02 Score=24.93 Aligned_cols=56 Identities=11% Similarity=0.271 Sum_probs=40.9
Q ss_pred eeeeccCCCCCCHHHHHHHhhc-CC-CeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHH
Q 007673 313 NLYIKNLGDSIDDEKLKELFSE-FG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALA 370 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~-~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 370 (593)
+-|+--++...+..+|++.++. |+ .|.+|..+....| .--|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g--~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG--LKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCC--ceEEEEEECCCCcHHHHHH
Confidence 5677778889999999999987 66 4777776665444 3358999987777655443
No 267
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=20.73 E-value=83 Score=30.00 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=30.1
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSV 59 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i 59 (593)
.......+||+-|+|...||+.|.++.+.+|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345567899999999999999999999999855433
No 268
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.55 E-value=2.1e+02 Score=29.56 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=29.9
Q ss_pred ccccceeeeccCCCC-CCHHHHHHHhhcC----CCeeEEEEeeC
Q 007673 308 KFQGLNLYIKNLGDS-IDDEKLKELFSEF----GTITSCKVMRD 346 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~-~~~~~l~~~F~~~----G~i~~v~i~~~ 346 (593)
.....+|-|-|++|+ +...+|...|+.| |.|..|.|...
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 345567999999875 7889999999866 56777887654
Done!