Query 007673
Match_columns 593
No_of_seqs 414 out of 3177
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 07:39:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 3E-43 1E-47 353.3 30.8 255 28-403 21-277 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 9.9E-43 3.4E-47 351.0 25.9 253 23-390 35-291 (292)
3 4f02_A Polyadenylate-binding p 100.0 2.6E-34 8.8E-39 275.3 19.9 179 22-201 8-186 (213)
4 4f02_A Polyadenylate-binding p 100.0 2.1E-31 7.1E-36 255.1 21.5 173 207-396 14-187 (213)
5 3md3_A Nuclear and cytoplasmic 100.0 6.9E-31 2.4E-35 241.0 20.5 164 30-194 1-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 2.1E-30 7.1E-35 238.4 20.6 163 28-192 2-167 (168)
7 1fxl_A Paraneoplastic encephal 100.0 3.3E-30 1.1E-34 236.7 21.3 163 28-192 1-166 (167)
8 1l3k_A Heterogeneous nuclear r 100.0 2.8E-30 9.5E-35 244.0 21.1 175 24-200 8-187 (196)
9 2qfj_A FBP-interacting repress 100.0 5.7E-30 2E-34 245.7 18.8 171 27-197 26-206 (216)
10 3nmr_A Cugbp ELAV-like family 100.0 1.9E-29 6.6E-34 233.5 20.5 165 28-193 2-174 (175)
11 3md3_A Nuclear and cytoplasmic 100.0 1.3E-29 4.6E-34 232.4 19.0 165 209-389 1-166 (166)
12 2qfj_A FBP-interacting repress 100.0 8.1E-29 2.8E-33 237.7 21.4 177 206-389 26-204 (216)
13 2cjk_A Nuclear polyadenylated 100.0 4.2E-30 1.4E-34 236.2 11.0 164 28-196 2-166 (167)
14 1fxl_A Paraneoplastic encephal 100.0 8.9E-29 3E-33 227.1 19.7 162 208-387 2-167 (167)
15 1b7f_A Protein (SXL-lethal pro 100.0 6.3E-29 2.2E-33 228.5 17.3 163 207-387 2-168 (168)
16 1fje_B Nucleolin RBD12, protei 100.0 1.6E-29 5.4E-34 234.3 13.1 167 24-196 8-174 (175)
17 1l3k_A Heterogeneous nuclear r 100.0 1.4E-28 4.9E-33 232.2 19.7 176 206-395 11-188 (196)
18 3nmr_A Cugbp ELAV-like family 100.0 1.7E-28 5.9E-33 227.1 19.0 165 207-388 2-175 (175)
19 3smz_A Protein raver-1, ribonu 100.0 4.6E-28 1.6E-32 242.7 21.3 175 27-201 93-269 (284)
20 2cjk_A Nuclear polyadenylated 100.0 8.9E-29 3E-33 227.3 14.3 163 207-390 2-166 (167)
21 2g4b_A Splicing factor U2AF 65 100.0 7.6E-28 2.6E-32 222.2 19.4 157 28-193 3-171 (172)
22 3tyt_A Heterogeneous nuclear r 100.0 4.3E-28 1.5E-32 229.7 17.0 154 28-187 3-194 (205)
23 2yh0_A Splicing factor U2AF 65 100.0 9.4E-28 3.2E-32 226.9 18.5 163 28-197 3-195 (198)
24 3pgw_A U1-A; protein-RNA compl 100.0 2.2E-27 7.5E-32 237.5 21.0 163 25-194 5-281 (282)
25 2adc_A Polypyrimidine tract-bi 99.9 2.7E-27 9.3E-32 229.1 18.5 165 22-195 27-227 (229)
26 2dyd_A Poly(A)-binding protein 99.9 3.9E-29 1.3E-33 191.7 2.3 78 496-573 7-84 (85)
27 3tyt_A Heterogeneous nuclear r 99.9 2.2E-27 7.5E-32 224.8 14.8 176 207-387 3-204 (205)
28 1ifw_A Polyadenylate-binding p 99.9 2.4E-28 8.3E-33 190.3 6.6 79 496-574 5-85 (92)
29 2g4b_A Splicing factor U2AF 65 99.9 4.9E-27 1.7E-31 216.8 15.7 158 207-388 3-172 (172)
30 2ghp_A U4/U6 snRNA-associated 99.9 5.1E-27 1.8E-31 236.0 16.9 167 28-196 116-291 (292)
31 1fje_B Nucleolin RBD12, protei 99.9 6.5E-28 2.2E-32 223.4 9.2 164 206-390 11-174 (175)
32 3pgw_A U1-A; protein-RNA compl 99.9 1.4E-26 4.6E-31 231.7 19.4 178 206-389 7-282 (282)
33 3sde_A Paraspeckle component 1 99.9 1.6E-26 5.6E-31 228.2 19.1 159 25-197 18-180 (261)
34 1g9l_A Polyadenylate-binding p 99.9 3.9E-27 1.3E-31 199.4 10.8 78 497-574 52-129 (144)
35 1qm9_A Polypyrimidine tract-bi 99.9 8E-27 2.7E-31 220.7 13.5 158 29-195 3-196 (198)
36 3kuj_A Polyadenylate-binding p 99.9 1.7E-27 5.8E-32 184.7 6.8 79 497-575 6-84 (88)
37 1nmr_A Poly(A)-binding protein 99.9 3.1E-28 1.1E-32 186.7 1.4 76 496-571 8-83 (85)
38 2adc_A Polypyrimidine tract-bi 99.9 3.1E-26 1.1E-30 221.6 14.7 177 206-390 32-228 (229)
39 3sde_A Paraspeckle component 1 99.9 8.5E-26 2.9E-30 223.0 17.5 156 206-390 20-179 (261)
40 2yh0_A Splicing factor U2AF 65 99.9 1.8E-26 6.1E-31 218.1 11.9 178 207-390 3-194 (198)
41 1qm9_A Polypyrimidine tract-bi 99.9 3.4E-26 1.2E-30 216.3 10.4 175 208-390 3-197 (198)
42 1i2t_A HYD protein; four alpha 99.9 1.2E-25 4.1E-30 161.8 4.6 60 511-570 1-60 (61)
43 4f25_A Polyadenylate-binding p 99.8 8E-21 2.7E-25 162.4 10.7 103 29-133 5-113 (115)
44 2kn4_A Immunoglobulin G-bindin 99.8 1.8E-20 6E-25 170.2 11.4 147 238-390 3-150 (158)
45 4fxv_A ELAV-like protein 1; RN 99.8 7.2E-20 2.5E-24 151.7 11.2 82 27-108 17-98 (99)
46 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-19 7.9E-24 162.8 13.2 138 58-197 2-151 (158)
47 4fxv_A ELAV-like protein 1; RN 99.8 2.4E-19 8E-24 148.6 11.1 82 308-389 16-98 (99)
48 2i2y_A Fusion protein consists 99.8 8.8E-20 3E-24 163.9 7.7 138 246-390 10-148 (150)
49 3s8s_A Histone-lysine N-methyl 99.8 2.5E-18 8.7E-23 145.2 14.0 90 309-398 4-94 (110)
50 2e5h_A Zinc finger CCHC-type a 99.8 1.1E-18 3.7E-23 143.5 11.4 91 17-107 4-94 (94)
51 4f25_A Polyadenylate-binding p 99.8 5.2E-19 1.8E-23 151.1 9.5 108 116-224 4-113 (115)
52 3s8s_A Histone-lysine N-methyl 99.8 1.3E-18 4.4E-23 147.0 11.5 83 27-109 4-86 (110)
53 2lkz_A RNA-binding protein 5; 99.8 3.9E-19 1.3E-23 145.6 7.5 84 25-108 5-94 (95)
54 2lxi_A RNA-binding protein 10; 99.8 3.7E-19 1.3E-23 145.1 7.1 82 29-110 1-84 (91)
55 1x5u_A Splicing factor 3B subu 99.8 4.1E-18 1.4E-22 143.1 13.0 91 22-112 8-98 (105)
56 1x5s_A Cold-inducible RNA-bind 99.8 2.9E-18 9.8E-23 143.3 11.7 90 23-112 6-95 (102)
57 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.4E-18 8.1E-23 139.2 10.7 84 26-109 3-86 (87)
58 2cqc_A Arginine/serine-rich sp 99.8 3.9E-18 1.3E-22 140.4 12.2 88 21-108 7-94 (95)
59 2i2y_A Fusion protein consists 99.8 2E-18 6.7E-23 155.1 10.9 124 68-196 10-148 (150)
60 2cq0_A Eukaryotic translation 99.8 5.2E-18 1.8E-22 141.9 12.4 89 23-111 9-97 (103)
61 2dgo_A Cytotoxic granule-assoc 99.8 1E-17 3.4E-22 143.2 14.1 90 23-112 9-98 (115)
62 2dnz_A Probable RNA-binding pr 99.8 7.5E-18 2.6E-22 138.7 12.7 85 27-111 3-87 (95)
63 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.5E-18 1.2E-22 137.5 10.2 83 25-107 3-85 (85)
64 1whw_A Hypothetical protein ri 99.8 8.4E-18 2.9E-22 139.6 12.8 87 26-112 5-91 (99)
65 2dgs_A DAZ-associated protein 99.7 8.6E-18 2.9E-22 139.5 12.6 89 23-112 4-92 (99)
66 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.7E-18 1.3E-22 142.6 10.3 90 22-111 5-94 (102)
67 2khc_A Testis-specific RNP-typ 99.7 3.6E-18 1.2E-22 146.7 10.1 86 22-107 33-118 (118)
68 2do4_A Squamous cell carcinoma 99.7 1.6E-17 5.4E-22 138.2 13.5 86 24-110 12-97 (100)
69 2dgp_A Bruno-like 4, RNA bindi 99.7 7.4E-18 2.5E-22 141.8 11.6 91 21-111 5-98 (106)
70 2cpz_A CUG triplet repeat RNA- 99.7 1.1E-17 3.8E-22 143.0 12.7 88 24-111 20-107 (115)
71 2dnm_A SRP46 splicing factor; 99.7 7E-18 2.4E-22 141.1 11.2 86 25-110 9-94 (103)
72 2div_A TRNA selenocysteine ass 99.7 5.3E-18 1.8E-22 140.8 10.3 87 23-109 3-94 (99)
73 2dng_A Eukaryotic translation 99.7 1.6E-17 5.5E-22 138.9 13.3 89 21-111 7-95 (103)
74 2ywk_A Putative RNA-binding pr 99.7 5.6E-18 1.9E-22 139.5 10.3 85 22-107 9-93 (95)
75 3md1_A Nuclear and cytoplasmic 99.7 8.7E-18 3E-22 134.6 11.1 81 29-109 1-81 (83)
76 2d9p_A Polyadenylate-binding p 99.7 1.5E-17 5.1E-22 139.1 12.8 89 21-111 7-95 (103)
77 1x4h_A RNA-binding protein 28; 99.7 1.7E-17 5.7E-22 140.9 13.2 88 24-111 10-103 (111)
78 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.1E-17 7E-22 138.3 13.5 90 21-112 7-96 (103)
79 2la6_A RNA-binding protein FUS 99.7 1.3E-17 4.4E-22 138.4 11.9 85 23-107 7-99 (99)
80 2cph_A RNA binding motif prote 99.7 1.6E-17 5.6E-22 139.9 12.7 90 23-112 9-100 (107)
81 3lqv_A PRE-mRNA branch site pr 99.7 4.3E-18 1.5E-22 145.5 8.9 105 26-143 5-109 (115)
82 2dh8_A DAZ-associated protein 99.7 1.1E-17 3.7E-22 140.5 11.1 89 22-111 9-97 (105)
83 2dnh_A Bruno-like 5, RNA bindi 99.7 3.2E-17 1.1E-21 137.6 13.8 86 25-111 11-99 (105)
84 2cqd_A RNA-binding region cont 99.7 2E-17 6.8E-22 141.6 12.7 88 22-110 10-97 (116)
85 2kxn_B Transformer-2 protein h 99.7 8.9E-18 3.1E-22 146.2 10.6 88 22-109 39-126 (129)
86 1x5t_A Splicing factor 3B subu 99.7 8.3E-18 2.8E-22 138.7 9.8 85 27-111 3-88 (96)
87 2x1f_A MRNA 3'-END-processing 99.7 1E-17 3.6E-22 138.1 10.3 83 28-110 1-83 (96)
88 1p27_B RNA-binding protein 8A; 99.7 1.7E-17 5.7E-22 139.6 11.7 85 25-109 19-103 (106)
89 2jrs_A RNA-binding protein 39; 99.7 2E-17 7E-22 139.3 12.1 85 25-109 22-106 (108)
90 3p5t_L Cleavage and polyadenyl 99.7 3.8E-18 1.3E-22 138.9 7.3 81 30-110 2-84 (90)
91 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.8E-17 6.1E-22 147.0 12.1 93 14-106 48-140 (140)
92 2cpf_A RNA binding motif prote 99.7 1.7E-17 5.7E-22 137.5 10.9 85 27-111 3-90 (98)
93 2cq3_A RNA-binding protein 9; 99.7 4.5E-17 1.6E-21 136.2 13.6 89 21-111 7-95 (103)
94 1u6f_A Tcubp1, RNA-binding pro 99.7 5E-17 1.7E-21 143.9 14.1 88 24-111 37-124 (139)
95 1wi8_A EIF-4B, eukaryotic tran 99.7 2.7E-17 9.3E-22 137.8 11.7 89 22-112 8-97 (104)
96 2wbr_A GW182, gawky, LD47780P; 99.7 2E-17 6.7E-22 130.1 9.6 75 26-106 4-78 (89)
97 3n9u_C Cleavage and polyadenyl 99.7 1.8E-17 6.3E-22 149.0 10.8 81 28-108 54-136 (156)
98 3ns6_A Eukaryotic translation 99.7 8.8E-18 3E-22 139.6 8.0 82 27-108 4-92 (100)
99 2cqp_A RNA-binding protein 12; 99.7 1.6E-17 5.6E-22 137.5 9.6 85 25-109 11-95 (98)
100 3s7r_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 132.5 11.0 81 25-106 7-87 (87)
101 2m2b_A RNA-binding protein 10; 99.7 8.8E-18 3E-22 147.0 8.1 85 24-109 18-108 (131)
102 2do0_A HnRNP M, heterogeneous 99.7 7E-17 2.4E-21 137.7 13.5 87 22-109 8-94 (114)
103 2cqg_A TDP-43, TAR DNA-binding 99.7 8.8E-17 3E-21 134.4 13.8 88 23-112 9-96 (103)
104 2fy1_A RNA-binding motif prote 99.7 4.4E-17 1.5E-21 139.2 12.1 84 26-110 4-87 (116)
105 3md1_A Nuclear and cytoplasmic 99.7 3.2E-17 1.1E-21 131.2 10.4 79 312-390 2-81 (83)
106 2cpe_A RNA-binding protein EWS 99.7 3.8E-17 1.3E-21 139.2 11.4 88 24-111 10-105 (113)
107 2dhg_A TRNA selenocysteine ass 99.7 4.2E-17 1.4E-21 136.6 11.5 86 25-111 5-92 (104)
108 2ek1_A RNA-binding protein 12; 99.7 1E-17 3.5E-22 137.9 7.3 83 25-107 11-93 (95)
109 1oo0_B CG8781-PA, drosophila Y 99.7 3.3E-17 1.1E-21 138.8 10.5 86 25-110 22-107 (110)
110 2lxi_A RNA-binding protein 10; 99.7 7E-18 2.4E-22 137.5 6.0 79 312-390 2-83 (91)
111 1sjq_A Polypyrimidine tract-bi 99.7 2.5E-17 8.5E-22 136.1 9.4 83 25-113 12-96 (105)
112 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.5E-17 1.5E-21 131.7 10.7 81 310-390 5-86 (87)
113 1wez_A HnRNP H', FTP-3, hetero 99.7 5.2E-17 1.8E-21 135.2 11.1 85 23-110 9-93 (102)
114 1s79_A Lupus LA protein; RRM, 99.7 3.1E-17 1E-21 136.7 9.6 80 27-108 9-88 (103)
115 1x4e_A RNA binding motif, sing 99.7 9.7E-18 3.3E-22 135.0 6.4 82 26-107 2-83 (85)
116 2wbr_A GW182, gawky, LD47780P; 99.7 4.1E-17 1.4E-21 128.3 9.7 77 310-391 6-82 (89)
117 2hvz_A Splicing factor, argini 99.7 2.1E-17 7E-22 137.7 8.5 93 30-127 1-101 (101)
118 2lkz_A RNA-binding protein 5; 99.7 1.5E-17 5E-22 136.2 7.4 80 310-389 8-94 (95)
119 1x4a_A Splicing factor, argini 99.7 1.3E-16 4.4E-21 134.8 13.5 88 21-111 14-101 (109)
120 3ucg_A Polyadenylate-binding p 99.7 4.9E-17 1.7E-21 132.0 10.1 80 28-108 5-84 (89)
121 1wg5_A Heterogeneous nuclear r 99.7 8.5E-17 2.9E-21 134.7 11.7 85 24-110 10-95 (104)
122 2dgv_A HnRNP M, heterogeneous 99.7 7.6E-17 2.6E-21 131.8 11.2 83 26-110 5-87 (92)
123 3ulh_A THO complex subunit 4; 99.7 7.1E-17 2.4E-21 136.0 11.3 83 24-107 24-106 (107)
124 1p1t_A Cleavage stimulation fa 99.7 2.7E-17 9.3E-22 137.8 8.4 83 27-109 6-88 (104)
125 1rk8_A CG8781-PA, CG8781-PA pr 99.7 3.8E-17 1.3E-21 149.0 10.1 140 254-395 11-157 (165)
126 2dgx_A KIAA0430 protein; RRM d 99.7 7.4E-17 2.5E-21 132.9 10.9 83 24-109 4-90 (96)
127 2do4_A Squamous cell carcinoma 99.7 6.4E-17 2.2E-21 134.4 10.5 82 309-390 15-96 (100)
128 3r27_A HnRNP L, heterogeneous 99.7 4.1E-17 1.4E-21 133.4 8.8 80 307-391 17-98 (100)
129 1s79_A Lupus LA protein; RRM, 99.7 5.2E-17 1.8E-21 135.2 9.6 83 310-393 10-92 (103)
130 3q2s_C Cleavage and polyadenyl 99.7 2.6E-17 9E-22 158.0 9.0 86 310-395 67-155 (229)
131 3ns6_A Eukaryotic translation 99.7 2.6E-17 8.8E-22 136.7 7.8 83 310-392 5-95 (100)
132 2dgw_A Probable RNA-binding pr 99.7 1.2E-16 4E-21 130.4 11.5 84 24-110 5-88 (91)
133 3mdf_A Peptidyl-prolyl CIS-tra 99.7 6.2E-17 2.1E-21 130.2 9.7 80 309-388 5-85 (85)
134 3r27_A HnRNP L, heterogeneous 99.7 7.5E-17 2.6E-21 131.8 10.2 80 24-109 16-97 (100)
135 2db1_A Heterogeneous nuclear r 99.7 6.1E-17 2.1E-21 138.8 10.1 85 22-108 10-97 (118)
136 1sjq_A Polypyrimidine tract-bi 99.7 3.1E-17 1.1E-21 135.5 7.9 80 307-391 12-93 (105)
137 2rs2_A Musashi-1, RNA-binding 99.7 6.7E-17 2.3E-21 136.5 10.1 85 25-110 21-105 (109)
138 4a8x_A RNA-binding protein wit 99.7 5.9E-17 2E-21 131.2 9.4 81 28-108 3-84 (88)
139 3ex7_B RNA-binding protein 8A; 99.7 8.4E-17 2.9E-21 139.9 10.9 87 24-110 17-103 (126)
140 2cpy_A RNA-binding protein 12; 99.7 5.2E-17 1.8E-21 138.4 9.3 83 24-108 10-93 (114)
141 2kt5_A RNA and export factor-b 99.7 1.5E-16 5.2E-21 137.8 12.3 86 24-110 30-115 (124)
142 2ywk_A Putative RNA-binding pr 99.7 9E-17 3.1E-21 132.2 10.3 81 309-389 14-94 (95)
143 2mss_A Protein (musashi1); RNA 99.7 3.2E-17 1.1E-21 128.5 7.2 75 31-106 1-75 (75)
144 3p5t_L Cleavage and polyadenyl 99.7 2.5E-17 8.6E-22 134.0 6.8 79 312-390 2-83 (90)
145 2x1f_A MRNA 3'-END-processing 99.7 1E-16 3.4E-21 132.2 10.5 83 311-393 2-85 (96)
146 1whw_A Hypothetical protein ri 99.7 9.3E-17 3.2E-21 133.2 10.2 82 309-390 6-88 (99)
147 1x4d_A Matrin 3; structural ge 99.7 6.8E-17 2.3E-21 133.5 9.2 83 24-112 10-95 (102)
148 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.4E-17 8.3E-22 136.9 6.6 84 24-109 14-98 (100)
149 2do0_A HnRNP M, heterogeneous 99.7 3.1E-16 1E-20 133.7 13.6 81 309-389 13-93 (114)
150 1wex_A Hypothetical protein (r 99.7 1.9E-16 6.5E-21 131.8 11.9 82 24-111 10-93 (104)
151 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.8E-17 9.7E-22 129.5 6.5 76 30-106 1-76 (77)
152 2cpy_A RNA-binding protein 12; 99.7 6.1E-17 2.1E-21 138.0 9.0 87 309-396 13-100 (114)
153 2fc9_A NCL protein; structure 99.7 1.7E-16 5.8E-21 132.1 11.4 85 23-111 9-93 (101)
154 2err_A Ataxin-2-binding protei 99.7 6.5E-17 2.2E-21 136.6 8.9 85 23-109 23-107 (109)
155 2d9p_A Polyadenylate-binding p 99.7 7E-17 2.4E-21 135.0 9.1 83 307-390 11-93 (103)
156 2cpi_A CCR4-NOT transcription 99.7 1.2E-16 4.2E-21 135.4 10.6 88 24-111 10-103 (111)
157 3n9u_C Cleavage and polyadenyl 99.7 2E-16 6.8E-21 142.3 12.4 87 310-396 54-143 (156)
158 2lea_A Serine/arginine-rich sp 99.7 2.2E-17 7.5E-22 145.0 5.9 121 251-390 6-127 (135)
159 2dnz_A Probable RNA-binding pr 99.7 1.4E-16 4.8E-21 131.0 10.4 81 310-390 4-85 (95)
160 2cq1_A PTB-like protein L; RRM 99.7 2.6E-16 8.8E-21 130.2 11.9 83 23-111 9-93 (101)
161 2e5h_A Zinc finger CCHC-type a 99.7 1.7E-16 5.9E-21 130.2 10.7 81 308-388 13-94 (94)
162 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-16 4.1E-21 134.1 9.9 83 309-391 13-98 (105)
163 2fy1_A RNA-binding motif prote 99.7 1.2E-16 3.9E-21 136.6 10.0 81 310-390 6-86 (116)
164 2hgl_A HNRPF protein, heteroge 99.7 9.5E-17 3.2E-21 140.3 9.6 84 23-108 38-124 (136)
165 2cq4_A RNA binding motif prote 99.7 6.7E-17 2.3E-21 137.8 8.4 81 27-108 23-103 (114)
166 1x5t_A Splicing factor 3B subu 99.7 9.4E-17 3.2E-21 132.4 8.9 81 310-390 4-86 (96)
167 2cpz_A CUG triplet repeat RNA- 99.7 1.3E-16 4.4E-21 136.3 10.0 83 308-390 22-105 (115)
168 2dis_A Unnamed protein product 99.7 1.7E-16 5.7E-21 134.2 10.5 86 26-111 5-94 (109)
169 2cq3_A RNA-binding protein 9; 99.7 2.5E-16 8.5E-21 131.6 11.3 82 308-390 12-93 (103)
170 2cqc_A Arginine/serine-rich sp 99.7 2.2E-16 7.4E-21 129.9 10.6 82 308-389 12-94 (95)
171 1oo0_B CG8781-PA, drosophila Y 99.7 1E-16 3.4E-21 135.8 8.8 84 308-391 23-107 (110)
172 3ulh_A THO complex subunit 4; 99.7 2.2E-16 7.6E-21 132.9 10.8 81 308-388 26-106 (107)
173 2dgx_A KIAA0430 protein; RRM d 99.7 1.7E-16 5.7E-21 130.8 9.8 80 309-390 7-90 (96)
174 2cq0_A Eukaryotic translation 99.7 1.4E-16 4.7E-21 133.2 9.4 83 308-390 12-95 (103)
175 2fc8_A NCL protein; structure 99.7 3E-16 1E-20 130.8 11.4 86 23-111 9-94 (102)
176 2la6_A RNA-binding protein FUS 99.7 1.9E-16 6.5E-21 131.3 10.1 81 308-388 10-99 (99)
177 2db1_A Heterogeneous nuclear r 99.7 1.4E-16 4.8E-21 136.5 9.6 85 309-394 15-102 (118)
178 2dgo_A Cytotoxic granule-assoc 99.7 2.3E-16 7.7E-21 134.8 10.7 83 308-390 12-95 (115)
179 2a3j_A U1 small nuclear ribonu 99.7 1.4E-16 4.7E-21 137.7 9.4 83 25-110 25-111 (127)
180 1p1t_A Cleavage stimulation fa 99.7 1.2E-16 4E-21 133.9 8.7 87 310-396 7-94 (104)
181 1x4c_A Splicing factor, argini 99.7 6E-16 2E-20 130.5 13.0 79 26-111 12-95 (108)
182 1x4b_A Heterogeneous nuclear r 99.7 2.5E-16 8.5E-21 134.7 10.8 84 28-112 26-109 (116)
183 1x5u_A Splicing factor 3B subu 99.7 1.7E-16 5.7E-21 133.2 9.4 83 308-390 12-95 (105)
184 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.8E-16 1.3E-20 141.1 12.5 86 25-110 35-120 (156)
185 2lea_A Serine/arginine-rich sp 99.7 1E-16 3.4E-21 140.8 8.3 86 25-110 43-128 (135)
186 2ki2_A SS-DNA binding protein 99.7 3.1E-17 1.1E-21 133.5 4.7 79 30-109 2-80 (90)
187 2dnq_A RNA-binding protein 4B; 99.7 5.3E-16 1.8E-20 126.1 12.0 79 26-112 5-83 (90)
188 2jwn_A Embryonic polyadenylate 99.7 2.8E-16 9.5E-21 136.1 11.0 81 28-109 35-115 (124)
189 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-16 5.4E-21 132.6 9.0 82 309-390 10-92 (102)
190 1p27_B RNA-binding protein 8A; 99.7 2.3E-16 7.8E-21 132.6 9.9 83 308-390 20-103 (106)
191 2dnn_A RNA-binding protein 12; 99.7 2E-16 6.7E-21 132.9 9.4 80 26-108 13-92 (109)
192 2err_A Ataxin-2-binding protei 99.7 1.8E-16 6E-21 133.9 9.1 83 307-390 25-107 (109)
193 2ad9_A Polypyrimidine tract-bi 99.7 2.9E-16 9.8E-21 133.2 10.4 83 24-112 26-110 (119)
194 2cph_A RNA binding motif prote 99.7 2.4E-16 8E-21 132.8 9.8 83 308-390 12-97 (107)
195 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.6E-16 1.2E-20 130.7 10.8 82 308-390 12-93 (103)
196 2cpj_A Non-POU domain-containi 99.7 4.1E-16 1.4E-20 129.2 11.1 84 23-112 9-92 (99)
197 2dgs_A DAZ-associated protein 99.7 3.1E-16 1.1E-20 130.0 10.3 81 309-390 8-89 (99)
198 2cpf_A RNA binding motif prote 99.7 1.9E-16 6.5E-21 131.1 9.0 81 310-390 4-88 (98)
199 1why_A Hypothetical protein ri 99.7 5.5E-16 1.9E-20 128.0 11.5 81 24-110 12-94 (97)
200 2dhg_A TRNA selenocysteine ass 99.7 1.5E-16 5E-21 133.3 7.9 82 309-390 7-90 (104)
201 2jvr_A Nucleolar protein 3; RN 99.7 1.7E-16 5.8E-21 133.5 8.3 82 26-111 25-107 (111)
202 2jrs_A RNA-binding protein 39; 99.7 2.1E-16 7.3E-21 133.0 8.8 83 308-390 23-106 (108)
203 2hgl_A HNRPF protein, heteroge 99.7 1.7E-16 5.9E-21 138.7 8.5 85 309-394 42-129 (136)
204 2dnn_A RNA-binding protein 12; 99.7 4.8E-16 1.6E-20 130.5 10.8 82 310-393 15-96 (109)
205 2e5j_A Methenyltetrahydrofolat 99.7 6E-16 2.1E-20 127.7 11.2 84 21-109 11-94 (97)
206 3ucg_A Polyadenylate-binding p 99.7 3.6E-16 1.2E-20 126.9 9.7 79 311-390 6-85 (89)
207 2nlw_A Eukaryotic translation 99.7 3.3E-16 1.1E-20 131.3 9.7 82 26-109 12-100 (105)
208 2dgv_A HnRNP M, heterogeneous 99.7 2.8E-16 9.4E-21 128.4 8.9 81 309-390 6-86 (92)
209 1x4d_A Matrin 3; structural ge 99.7 1.1E-16 3.6E-21 132.4 6.4 77 309-390 13-92 (102)
210 2ytc_A PRE-mRNA-splicing facto 99.6 5.1E-16 1.7E-20 124.8 10.2 77 25-107 8-85 (85)
211 2dnm_A SRP46 splicing factor; 99.6 1.9E-16 6.7E-21 132.3 8.0 82 309-390 11-93 (103)
212 2ad9_A Polypyrimidine tract-bi 99.6 2.3E-16 7.9E-21 133.8 8.5 80 307-391 27-108 (119)
213 2khc_A Testis-specific RNP-typ 99.6 2.3E-16 7.9E-21 135.4 8.6 81 308-388 37-118 (118)
214 2cq1_A PTB-like protein L; RRM 99.6 3.6E-16 1.2E-20 129.3 9.4 80 307-391 11-92 (101)
215 1rk8_A CG8781-PA, CG8781-PA pr 99.6 5.1E-16 1.8E-20 141.5 11.3 87 25-111 68-154 (165)
216 2cq4_A RNA binding motif prote 99.6 3.4E-16 1.2E-20 133.4 9.5 83 310-393 24-107 (114)
217 3q2s_C Cleavage and polyadenyl 99.6 2.6E-16 9E-21 151.0 9.7 81 28-108 67-149 (229)
218 2kt5_A RNA and export factor-b 99.6 4.9E-16 1.7E-20 134.6 10.4 81 309-389 33-113 (124)
219 4a8x_A RNA-binding protein wit 99.6 1.6E-16 5.3E-21 128.7 6.7 81 310-390 3-85 (88)
220 2cpe_A RNA-binding protein EWS 99.6 3.3E-16 1.1E-20 133.3 9.1 83 308-390 12-103 (113)
221 2dgw_A Probable RNA-binding pr 99.6 5.3E-16 1.8E-20 126.4 10.0 80 309-390 8-87 (91)
222 1x5s_A Cold-inducible RNA-bind 99.6 3.1E-16 1.1E-20 130.8 8.8 82 309-390 10-92 (102)
223 2a3j_A U1 small nuclear ribonu 99.6 3.6E-16 1.2E-20 135.0 9.2 85 308-394 26-114 (127)
224 2krb_A Eukaryotic translation 99.6 2E-16 7E-21 125.8 7.0 73 29-103 1-80 (81)
225 1x5o_A RNA binding motif, sing 99.6 1.3E-15 4.4E-20 129.8 12.4 83 25-108 21-111 (114)
226 1fj7_A Nucleolin RBD1, protein 99.6 1.2E-16 4E-21 133.1 5.8 84 25-110 13-96 (101)
227 2diu_A KIAA0430 protein; struc 99.6 1E-15 3.5E-20 121.4 10.8 78 26-113 6-88 (96)
228 2la4_A Nuclear and cytoplasmic 99.6 9E-17 3.1E-21 133.8 5.0 77 26-108 24-100 (101)
229 1wi8_A EIF-4B, eukaryotic tran 99.6 4.4E-16 1.5E-20 130.4 9.2 81 308-390 12-94 (104)
230 2div_A TRNA selenocysteine ass 99.6 4.4E-16 1.5E-20 129.1 9.1 81 309-389 7-93 (99)
231 2kxn_B Transformer-2 protein h 99.6 3.9E-16 1.3E-20 135.8 9.1 83 308-390 43-126 (129)
232 1x4g_A Nucleolysin TIAR; struc 99.6 8.5E-16 2.9E-20 129.8 10.8 83 26-114 22-104 (109)
233 3s7r_A Heterogeneous nuclear r 99.6 8.2E-16 2.8E-20 124.2 10.2 79 308-387 8-87 (87)
234 2dnp_A RNA-binding protein 14; 99.6 8.8E-16 3E-20 124.8 10.4 80 24-111 4-83 (90)
235 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-16 6.1E-21 133.4 6.4 83 24-108 6-91 (107)
236 2hgm_A HNRPF protein, heteroge 99.6 3.1E-16 1E-20 134.8 8.0 83 23-108 36-120 (126)
237 1wel_A RNA-binding protein 12; 99.6 3.3E-16 1.1E-20 135.6 8.2 84 24-108 20-103 (124)
238 2dgp_A Bruno-like 4, RNA bindi 99.6 4.1E-16 1.4E-20 131.0 8.6 83 308-390 10-96 (106)
239 2mss_A Protein (musashi1); RNA 99.6 2.8E-16 9.4E-21 123.1 7.0 74 313-387 1-75 (75)
240 2cpi_A CCR4-NOT transcription 99.6 3.6E-16 1.2E-20 132.5 8.3 83 308-390 12-101 (111)
241 1x4h_A RNA-binding protein 28; 99.6 6.8E-16 2.3E-20 130.9 10.0 82 309-390 13-101 (111)
242 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2E-16 6.8E-21 131.4 6.3 81 308-390 16-98 (100)
243 2xnq_A Nuclear polyadenylated 99.6 1.1E-15 3.6E-20 126.1 10.7 77 25-109 18-95 (97)
244 2dha_A FLJ20171 protein; RRM d 99.6 4.5E-16 1.6E-20 133.5 8.7 87 309-396 21-111 (123)
245 1iqt_A AUF1, heterogeneous nuc 99.6 1.3E-16 4.6E-21 124.9 4.9 75 31-106 1-75 (75)
246 1x4a_A Splicing factor, argini 99.6 8.9E-16 3E-20 129.7 10.3 81 308-390 19-99 (109)
247 2lmi_A GRSF-1, G-rich sequence 99.6 1.8E-16 6.1E-21 133.4 5.8 85 309-394 9-96 (107)
248 2cpx_A Hypothetical protein FL 99.6 2.9E-16 9.8E-21 134.1 7.2 86 26-111 22-107 (115)
249 1nu4_A U1A RNA binding domain; 99.6 3.5E-16 1.2E-20 129.2 7.2 82 26-110 5-90 (97)
250 2dng_A Eukaryotic translation 99.6 9E-16 3.1E-20 128.2 9.8 81 308-390 12-93 (103)
251 1wex_A Hypothetical protein (r 99.6 5E-16 1.7E-20 129.3 8.1 78 308-390 12-91 (104)
252 3ex7_B RNA-binding protein 8A; 99.6 6.7E-16 2.3E-20 134.1 9.2 83 308-390 19-102 (126)
253 2dgt_A RNA-binding protein 30; 99.6 2E-15 6.9E-20 123.2 11.5 80 24-111 5-84 (92)
254 2jvo_A Nucleolar protein 3; nu 99.6 9.9E-16 3.4E-20 128.9 9.6 79 24-110 26-104 (108)
255 1x5o_A RNA binding motif, sing 99.6 8.5E-16 2.9E-20 130.9 9.2 82 309-390 23-112 (114)
256 1wg5_A Heterogeneous nuclear r 99.6 5.6E-16 1.9E-20 129.6 8.0 81 309-390 13-94 (104)
257 2krb_A Eukaryotic translation 99.6 2.6E-16 8.7E-21 125.3 5.5 72 312-384 2-80 (81)
258 1x4f_A Matrin 3; structural ge 99.6 5.5E-16 1.9E-20 129.9 7.7 81 25-111 21-104 (112)
259 2jvr_A Nucleolar protein 3; RN 99.6 8.2E-16 2.8E-20 129.3 8.7 78 310-390 27-105 (111)
260 2cqd_A RNA-binding region cont 99.6 1.2E-15 4.1E-20 130.4 9.7 82 308-390 14-96 (116)
261 2nlw_A Eukaryotic translation 99.6 4.9E-16 1.7E-20 130.2 7.1 80 310-390 14-100 (105)
262 2dh8_A DAZ-associated protein 99.6 6.6E-16 2.3E-20 129.5 7.9 82 308-390 13-95 (105)
263 2m2b_A RNA-binding protein 10; 99.6 2.4E-16 8.1E-21 137.9 5.3 81 309-390 21-108 (131)
264 3lqv_A PRE-mRNA branch site pr 99.6 1.5E-15 5.1E-20 129.7 10.2 80 310-391 7-86 (115)
265 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-15 4.6E-20 128.4 9.7 82 309-391 23-105 (109)
266 2dha_A FLJ20171 protein; RRM d 99.6 9.1E-16 3.1E-20 131.6 8.8 80 26-107 20-103 (123)
267 1wez_A HnRNP H', FTP-3, hetero 99.6 3.9E-16 1.3E-20 129.9 6.3 79 309-389 13-91 (102)
268 2cqp_A RNA-binding protein 12; 99.6 6E-16 2.1E-20 128.0 7.3 81 309-389 13-94 (98)
269 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.9E-16 2E-20 121.9 6.8 75 312-387 1-76 (77)
270 1x4e_A RNA binding motif, sing 99.6 2.8E-16 9.5E-21 126.3 4.9 79 310-388 4-83 (85)
271 2ek1_A RNA-binding protein 12; 99.6 6.2E-16 2.1E-20 127.1 7.1 79 310-388 14-93 (95)
272 1x4f_A Matrin 3; structural ge 99.6 3.9E-16 1.3E-20 130.8 5.9 78 308-390 22-102 (112)
273 1x5p_A Negative elongation fac 99.6 5.8E-15 2E-19 121.8 12.9 82 22-111 8-89 (97)
274 1wel_A RNA-binding protein 12; 99.6 8.5E-16 2.9E-20 133.0 8.1 85 309-394 23-108 (124)
275 1u6f_A Tcubp1, RNA-binding pro 99.6 1.1E-15 3.7E-20 135.2 9.0 82 309-390 40-122 (139)
276 2la4_A Nuclear and cytoplasmic 99.6 1.1E-15 3.9E-20 127.1 8.5 77 309-390 25-101 (101)
277 2fc9_A NCL protein; structure 99.6 1.3E-15 4.3E-20 126.8 8.8 80 308-390 12-91 (101)
278 1nu4_A U1A RNA binding domain; 99.6 5.6E-16 1.9E-20 127.9 6.5 83 309-393 6-92 (97)
279 2xs2_A Deleted in azoospermia- 99.6 7.5E-16 2.6E-20 128.5 7.3 81 26-109 6-86 (102)
280 2lcw_A RNA-binding protein FUS 99.4 4.8E-17 1.6E-21 139.2 0.0 88 26-113 4-99 (116)
281 2hgn_A Heterogeneous nuclear r 99.6 2.7E-16 9.1E-21 137.9 4.7 83 25-110 42-124 (139)
282 3pgw_S U1-70K; protein-RNA com 99.6 1.9E-16 6.5E-21 166.3 4.4 82 309-390 100-182 (437)
283 2ki2_A SS-DNA binding protein 99.6 3.1E-16 1.1E-20 127.6 4.6 78 312-390 2-80 (90)
284 2dgu_A Heterogeneous nuclear r 99.6 3.5E-15 1.2E-19 124.6 11.2 78 26-111 8-85 (103)
285 2ytc_A PRE-mRNA-splicing facto 99.6 2.2E-15 7.5E-20 121.0 9.4 76 308-388 9-85 (85)
286 2jwn_A Embryonic polyadenylate 99.6 1.6E-15 5.4E-20 131.4 9.0 79 310-389 35-114 (124)
287 2f3j_A RNA and export factor b 99.6 2E-15 6.9E-20 138.8 10.2 84 25-109 84-167 (177)
288 2dnq_A RNA-binding protein 4B; 99.6 2.6E-15 8.8E-20 122.1 9.7 75 309-390 6-80 (90)
289 1why_A Hypothetical protein ri 99.6 2.3E-15 7.8E-20 124.2 9.5 77 309-390 15-93 (97)
290 1x4b_A Heterogeneous nuclear r 99.6 1.8E-15 6.3E-20 129.3 9.2 80 310-390 26-106 (116)
291 2jvo_A Nucleolar protein 3; nu 99.6 2.1E-15 7.1E-20 126.9 9.3 78 308-392 28-105 (108)
292 2kvi_A Nuclear polyadenylated 99.6 1.7E-15 6E-20 124.6 8.7 78 25-110 6-84 (96)
293 1x4c_A Splicing factor, argini 99.6 2.9E-15 1E-19 126.2 10.1 75 310-390 14-93 (108)
294 2cqh_A IGF-II mRNA-binding pro 99.6 1.7E-15 5.7E-20 124.0 8.3 79 26-111 5-85 (93)
295 1whx_A Hypothetical protein ri 99.6 1.4E-15 4.6E-20 128.8 7.9 77 27-109 8-84 (111)
296 2hgn_A Heterogeneous nuclear r 99.6 3.4E-16 1.2E-20 137.3 4.1 81 309-391 44-124 (139)
297 2cqg_A TDP-43, TAR DNA-binding 99.6 3.8E-15 1.3E-19 124.4 10.4 81 308-390 12-93 (103)
298 1x4g_A Nucleolysin TIAR; struc 99.6 2.7E-15 9.3E-20 126.6 9.5 78 308-390 22-99 (109)
299 1wf1_A RNA-binding protein RAL 99.6 3.9E-15 1.3E-19 125.9 10.4 78 25-110 23-101 (110)
300 2xnq_A Nuclear polyadenylated 99.6 4.5E-15 1.5E-19 122.3 10.4 76 308-390 19-95 (97)
301 2cpj_A Non-POU domain-containi 99.6 2.1E-15 7.2E-20 125.0 8.4 78 308-390 12-89 (99)
302 1fjc_A Nucleolin RBD2, protein 99.6 2.2E-15 7.6E-20 124.1 8.4 80 25-109 12-91 (96)
303 1whx_A Hypothetical protein ri 99.6 2.2E-15 7.4E-20 127.5 8.5 76 310-390 9-84 (111)
304 2e44_A Insulin-like growth fac 99.6 4.1E-15 1.4E-19 122.5 9.9 82 24-109 10-92 (96)
305 1h2v_Z 20 kDa nuclear CAP bind 99.6 4E-15 1.4E-19 134.3 10.6 82 309-390 37-119 (156)
306 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-14 4.3E-19 120.2 12.7 80 24-111 10-91 (99)
307 2dis_A Unnamed protein product 99.6 2.2E-15 7.5E-20 127.3 8.2 81 310-390 7-92 (109)
308 2hvz_A Splicing factor, argini 99.6 1.5E-15 5.2E-20 126.3 7.0 75 312-390 1-75 (101)
309 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.5E-15 1.2E-19 132.1 9.8 79 309-387 61-140 (140)
310 1wg1_A KIAA1579 protein, homol 99.6 4.5E-15 1.5E-19 120.0 9.3 77 27-110 3-79 (88)
311 2dgt_A RNA-binding protein 30; 99.6 5.8E-15 2E-19 120.5 10.1 76 308-390 7-82 (92)
312 2cq2_A Hypothetical protein LO 99.6 2.3E-15 7.7E-20 126.2 7.7 77 308-389 22-105 (114)
313 3pgw_S U1-70K; protein-RNA com 99.6 7.2E-16 2.5E-20 161.9 5.7 151 46-196 9-182 (437)
314 2j8a_A Histone-lysine N-methyl 99.6 3.2E-15 1.1E-19 125.4 8.3 78 30-107 3-94 (136)
315 2hgm_A HNRPF protein, heteroge 99.6 1.1E-15 3.8E-20 131.3 5.6 82 309-392 40-123 (126)
316 1sjr_A Polypyrimidine tract-bi 99.6 1.3E-14 4.6E-19 129.2 12.5 81 26-110 43-125 (164)
317 2e5j_A Methenyltetrahydrofolat 99.6 3.7E-15 1.3E-19 123.0 8.2 78 309-390 17-94 (97)
318 2dnp_A RNA-binding protein 14; 99.6 5.8E-15 2E-19 119.9 9.1 76 308-390 6-81 (90)
319 2e5g_A U6 snRNA-specific termi 99.6 1.1E-14 3.7E-19 119.3 10.7 79 26-110 5-83 (94)
320 2kvi_A Nuclear polyadenylated 99.6 2.9E-15 1E-19 123.3 7.3 77 308-391 7-84 (96)
321 2xs2_A Deleted in azoospermia- 99.6 2.2E-15 7.6E-20 125.5 6.5 82 309-392 7-88 (102)
322 2f3j_A RNA and export factor b 99.6 5.6E-15 1.9E-19 135.8 9.5 82 309-390 86-167 (177)
323 1iqt_A AUF1, heterogeneous nuc 99.6 1.8E-15 6.1E-20 118.4 5.2 74 313-387 1-75 (75)
324 2cq2_A Hypothetical protein LO 99.6 6E-15 2.1E-19 123.6 8.1 81 26-112 22-109 (114)
325 2lcw_A RNA-binding protein FUS 99.3 2.9E-16 9.9E-21 134.3 0.0 85 309-393 5-98 (116)
326 1fjc_A Nucleolin RBD2, protein 99.6 3.3E-15 1.1E-19 123.0 6.2 78 309-390 14-91 (96)
327 3beg_B Splicing factor, argini 99.6 6.2E-15 2.1E-19 125.6 8.1 75 27-108 14-93 (115)
328 1wg1_A KIAA1579 protein, homol 99.6 8.4E-15 2.9E-19 118.4 8.5 75 310-390 4-78 (88)
329 2cpx_A Hypothetical protein FL 99.6 5E-15 1.7E-19 126.3 7.4 79 309-390 23-105 (115)
330 3egn_A RNA-binding protein 40; 99.6 2E-15 6.9E-20 134.2 5.2 84 26-109 42-130 (143)
331 2dgu_A Heterogeneous nuclear r 99.5 1.1E-14 3.8E-19 121.5 9.1 76 309-391 9-84 (103)
332 3d2w_A TAR DNA-binding protein 99.5 1.5E-14 5.1E-19 117.0 9.5 77 309-393 9-87 (89)
333 3zzy_A Polypyrimidine tract-bi 99.5 1.6E-14 5.6E-19 123.8 10.2 75 312-390 29-106 (130)
334 2fc8_A NCL protein; structure 99.5 1.3E-14 4.3E-19 121.0 9.2 80 308-390 12-92 (102)
335 1sjr_A Polypyrimidine tract-bi 99.5 1.1E-14 3.8E-19 129.7 9.2 77 311-390 46-124 (164)
336 3d2w_A TAR DNA-binding protein 99.5 9.6E-15 3.3E-19 118.2 8.0 78 25-109 7-84 (89)
337 2cqh_A IGF-II mRNA-binding pro 99.5 7E-15 2.4E-19 120.3 7.2 76 309-390 6-83 (93)
338 3egn_A RNA-binding protein 40; 99.5 3.6E-15 1.2E-19 132.5 5.9 84 308-391 42-131 (143)
339 2pe8_A Splicing factor 45; RRM 99.5 3.5E-14 1.2E-18 118.3 11.3 83 309-391 6-95 (105)
340 1fj7_A Nucleolin RBD1, protein 99.5 1.1E-15 3.8E-20 127.2 2.1 80 310-391 16-96 (101)
341 1x5p_A Negative elongation fac 99.5 2.1E-14 7.3E-19 118.3 9.6 75 309-390 13-87 (97)
342 2hzc_A Splicing factor U2AF 65 99.5 1.7E-14 5.8E-19 116.3 8.7 73 26-105 3-86 (87)
343 2dnl_A Cytoplasmic polyadenyla 99.5 1.9E-14 6.7E-19 122.4 9.5 77 27-106 6-85 (114)
344 2diu_A KIAA0430 protein; struc 99.5 1.4E-14 4.8E-19 114.9 7.9 70 312-390 10-84 (96)
345 2j8a_A Histone-lysine N-methyl 99.5 1.3E-14 4.4E-19 121.8 8.1 79 312-390 3-96 (136)
346 1wf1_A RNA-binding protein RAL 99.5 1.4E-14 4.7E-19 122.5 8.5 73 310-389 26-99 (110)
347 3zzy_A Polypyrimidine tract-bi 99.5 7.2E-14 2.5E-18 119.9 12.5 79 27-110 26-107 (130)
348 2e5i_A Heterogeneous nuclear r 99.5 1E-13 3.5E-18 118.4 13.3 76 28-109 24-102 (124)
349 2pe8_A Splicing factor 45; RRM 99.5 4E-14 1.4E-18 117.9 10.4 83 26-108 5-93 (105)
350 2cpd_A Apobec-1 stimulating pr 99.5 3.7E-14 1.3E-18 117.4 10.0 75 309-390 13-89 (99)
351 1wf0_A TDP-43, TAR DNA-binding 99.5 1.2E-14 4.2E-19 117.4 6.9 78 27-111 3-80 (88)
352 2e5i_A Heterogeneous nuclear r 99.5 5E-14 1.7E-18 120.4 9.9 74 312-390 26-102 (124)
353 2bz2_A Negative elongation fac 99.5 4.4E-14 1.5E-18 121.2 9.6 80 24-111 34-113 (121)
354 2e44_A Insulin-like growth fac 99.5 2.9E-14 1E-18 117.3 7.9 78 310-390 14-92 (96)
355 3beg_B Splicing factor, argini 99.5 2.9E-14 1E-18 121.4 8.1 74 310-389 15-93 (115)
356 2e5g_A U6 snRNA-specific termi 99.5 4.1E-14 1.4E-18 115.9 8.2 76 310-390 7-82 (94)
357 2voo_A Lupus LA protein; RNA-b 99.5 6.2E-14 2.1E-18 130.8 10.2 80 28-109 108-187 (193)
358 2bz2_A Negative elongation fac 99.5 9.1E-14 3.1E-18 119.3 8.9 77 308-391 36-112 (121)
359 2hzc_A Splicing factor U2AF 65 99.5 1.2E-13 4.2E-18 111.2 8.7 70 310-385 5-85 (87)
360 2voo_A Lupus LA protein; RNA-b 99.5 1.4E-13 4.8E-18 128.4 10.0 80 310-390 108-187 (193)
361 3u1l_A PRE-mRNA-splicing facto 99.4 1.3E-13 4.3E-18 131.4 8.8 80 26-111 131-231 (240)
362 3u1l_A PRE-mRNA-splicing facto 99.4 1.1E-13 3.7E-18 131.9 8.3 80 309-393 132-232 (240)
363 1wf0_A TDP-43, TAR DNA-binding 99.4 6.3E-14 2.1E-18 113.2 5.3 75 310-390 4-78 (88)
364 3v4m_A Splicing factor U2AF 65 99.4 2.8E-13 9.5E-18 112.9 9.1 82 310-391 4-98 (105)
365 2dnl_A Cytoplasmic polyadenyla 99.4 1.7E-13 5.9E-18 116.4 7.9 77 310-389 7-87 (114)
366 2dit_A HIV TAT specific factor 99.4 8.5E-13 2.9E-17 111.7 12.0 86 23-112 9-105 (112)
367 1jmt_A Splicing factor U2AF 35 99.4 8.2E-14 2.8E-18 116.0 5.1 72 316-387 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 99.4 5.3E-13 1.8E-17 113.3 8.3 82 310-391 19-110 (118)
369 3ue2_A Poly(U)-binding-splicin 99.4 7.5E-13 2.6E-17 112.4 8.7 80 28-107 19-107 (118)
370 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.9E-17 110.3 9.8 80 308-390 12-102 (112)
371 3v4m_A Splicing factor U2AF 65 99.4 8.5E-13 2.9E-17 109.9 8.1 82 27-108 3-96 (105)
372 1jmt_A Splicing factor U2AF 35 99.3 2.8E-13 9.5E-18 112.7 3.1 72 34-106 20-103 (104)
373 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4.1E-16 101.5 12.8 77 28-111 9-92 (100)
374 3s6e_A RNA-binding protein 39; 99.3 2.4E-11 8.3E-16 102.3 10.5 80 310-392 6-95 (114)
375 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.5E-11 5.1E-16 101.0 8.0 64 321-390 27-90 (100)
376 3tht_A Alkylated DNA repair pr 99.2 1.8E-11 6.1E-16 123.0 8.8 76 308-388 15-97 (345)
377 3s6e_A RNA-binding protein 39; 99.2 4.6E-11 1.6E-15 100.6 8.6 79 25-107 3-91 (114)
378 3tht_A Alkylated DNA repair pr 99.2 2.4E-11 8.3E-16 122.1 8.0 76 25-106 14-96 (345)
379 2dnr_A Synaptojanin-1; RRM dom 99.0 5.9E-10 2E-14 87.6 7.7 73 309-389 5-85 (91)
380 1owx_A Lupus LA protein, SS-B, 99.0 9.2E-10 3.2E-14 92.6 9.1 84 305-393 12-99 (121)
381 1owx_A Lupus LA protein, SS-B, 98.9 3.3E-09 1.1E-13 89.2 8.2 76 25-106 14-93 (121)
382 2dnr_A Synaptojanin-1; RRM dom 98.9 5.2E-09 1.8E-13 82.3 8.4 75 26-109 4-86 (91)
383 3dxb_A Thioredoxin N-terminall 98.8 1.3E-08 4.5E-13 97.1 9.9 70 322-391 140-214 (222)
384 1ufw_A Synaptojanin 2; RNP dom 98.8 6.5E-09 2.2E-13 82.0 5.9 74 307-388 11-93 (95)
385 3dxb_A Thioredoxin N-terminall 98.7 2.8E-08 9.6E-13 94.7 8.6 80 29-108 124-212 (222)
386 1ufw_A Synaptojanin 2; RNP dom 98.7 2.6E-08 9E-13 78.6 6.4 75 23-106 9-92 (95)
387 2l9w_A U4/U6 snRNA-associated- 98.5 5.4E-07 1.9E-11 72.3 9.3 73 310-387 20-97 (117)
388 2dhx_A Poly (ADP-ribose) polym 98.0 7.4E-05 2.5E-09 59.6 11.0 88 28-130 7-99 (104)
389 2l9w_A U4/U6 snRNA-associated- 97.9 6.6E-05 2.2E-09 60.4 8.8 72 27-104 19-95 (117)
390 1wey_A Calcipressin 1; structu 97.8 4.5E-05 1.5E-09 61.2 6.3 74 29-108 5-83 (104)
391 1wey_A Calcipressin 1; structu 97.6 0.00013 4.6E-09 58.5 6.6 73 311-388 5-82 (104)
392 1uw4_A UPF3X; nonsense mediate 97.4 0.00044 1.5E-08 54.6 7.7 68 30-97 2-71 (91)
393 1whv_A Poly(A)-specific ribonu 97.3 0.0012 4E-08 52.1 8.5 55 29-92 16-70 (100)
394 2dhx_A Poly (ADP-ribose) polym 97.2 0.0028 9.4E-08 50.6 9.6 89 115-221 6-99 (104)
395 3ctr_A Poly(A)-specific ribonu 96.8 0.0012 4E-08 52.3 4.7 53 31-92 8-60 (101)
396 1wwh_A Nucleoporin 35, nucleop 96.7 0.0056 1.9E-07 50.6 8.2 74 25-106 20-94 (119)
397 1whv_A Poly(A)-specific ribonu 96.6 0.0035 1.2E-07 49.4 5.9 53 313-373 18-70 (100)
398 1uw4_A UPF3X; nonsense mediate 96.5 0.01 3.6E-07 46.7 8.0 76 312-387 2-85 (91)
399 2l08_A Regulator of nonsense t 96.4 0.0026 8.8E-08 50.5 4.0 70 28-97 8-79 (97)
400 3ctr_A Poly(A)-specific ribonu 96.3 0.0036 1.2E-07 49.5 4.2 53 313-373 8-60 (101)
401 1wwh_A Nucleoporin 35, nucleop 96.3 0.014 4.7E-07 48.2 7.8 76 309-391 22-98 (119)
402 3pq1_A Poly(A) RNA polymerase; 95.6 0.006 2E-07 63.3 3.3 57 28-90 52-108 (464)
403 3p3d_A Nucleoporin 53; structu 93.7 0.1 3.6E-06 43.6 5.8 77 312-390 8-99 (132)
404 3p3d_A Nucleoporin 53; structu 93.7 0.097 3.3E-06 43.8 5.5 76 29-106 7-96 (132)
405 2l08_A Regulator of nonsense t 93.6 0.13 4.3E-06 40.8 5.8 69 117-185 9-80 (97)
406 3pq1_A Poly(A) RNA polymerase; 92.6 0.065 2.2E-06 55.6 3.6 55 312-371 54-108 (464)
407 3d45_A Poly(A)-specific ribonu 83.5 2.3 7.8E-05 44.9 7.8 55 29-92 440-494 (507)
408 3d45_A Poly(A)-specific ribonu 75.9 5.6 0.00019 41.9 7.8 53 313-373 442-494 (507)
409 2g0c_A ATP-dependent RNA helic 43.2 21 0.00073 26.3 3.6 60 321-388 11-75 (76)
410 4eyt_A Telomerase associated p 42.5 1.1E+02 0.0037 23.2 9.2 57 27-91 10-66 (129)
411 2g0c_A ATP-dependent RNA helic 35.7 67 0.0023 23.4 5.4 58 40-106 12-74 (76)
412 1uqv_A STE50 protein; SAM, ste 28.8 31 0.0011 26.2 2.3 38 531-568 39-77 (85)
413 3j21_T 50S ribosomal protein L 27.4 1.5E+02 0.0051 22.5 6.0 58 31-91 24-83 (86)
414 2wx3_A MRNA-decapping enzyme 1 25.3 36 0.0012 23.0 1.8 22 544-565 18-39 (51)
415 2wx4_A DCP1, decapping protein 25.0 29 0.001 22.9 1.3 31 534-564 4-36 (46)
416 1vq8_S 50S ribosomal protein L 20.5 1.8E+02 0.006 22.1 5.2 55 32-89 24-80 (85)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3e-43 Score=353.35 Aligned_cols=255 Identities=21% Similarity=0.314 Sum_probs=230.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
.+++|||+|||+++|+++|+++|+.|| |.++++ ++++|||||+|.+.++|.+|++.+|+..+.|+.|+|.|+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 468999999999999999999999999 999988 4677999999999999999999999999999999999865
Q ss_pred CCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCe
Q 007673 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186 (593)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~ 186 (593)
. ..+|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.+++..+.|+
T Consensus 94 ~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 165 (284)
T 3smz_A 94 T--------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR 165 (284)
T ss_dssp C--------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred C--------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3 468999999999999999999999999999999988 5899999999999999999999999999999999
Q ss_pred eEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHH
Q 007673 187 QVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAV 266 (593)
Q Consensus 187 ~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai 266 (593)
.|.|.+...+....
T Consensus 166 ~i~v~~a~~~~~~~------------------------------------------------------------------ 179 (284)
T 3smz_A 166 TLYVHWTDAGQLTP------------------------------------------------------------------ 179 (284)
T ss_dssp ECEEEECCGGGCCT------------------------------------------------------------------
T ss_pred EEEEEECCCCCCCc------------------------------------------------------------------
Confidence 99998764321100
Q ss_pred HHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCC-CHHHHHHHhhcCCCeeEEEEee
Q 007673 267 EALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSI-DDEKLKELFSEFGTITSCKVMR 345 (593)
Q Consensus 267 ~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-~~~~l~~~F~~~G~i~~v~i~~ 345 (593)
.....++|||+|||..+ ++++|+++|+.||.|.+++|+.
T Consensus 180 ----------------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~ 219 (284)
T 3smz_A 180 ----------------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLAC 219 (284)
T ss_dssp ----------------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEE
T ss_pred ----------------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEE
Confidence 00245689999999996 9999999999999999999999
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchHHHHHHHHHhhhc
Q 007673 346 DPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRARLQAQFSQ 403 (593)
Q Consensus 346 ~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r~~~~~~~~~~ 403 (593)
+.+|.++|+|||+|.+.++|.+|+..|||..++|++|.|.|+.++..++....++...
T Consensus 220 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~aa 277 (284)
T 3smz_A 220 GQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIAA 277 (284)
T ss_dssp CSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHHH
T ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhHH
Confidence 9999999999999999999999999999999999999999999998887776665544
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=9.9e-43 Score=351.00 Aligned_cols=253 Identities=20% Similarity=0.371 Sum_probs=215.5
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.......++|||+|||+++|+++|+++|+.||.|.+|+++++..+ ++|||||+|.+.++|.+|++ +|+..+.|+.|+
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 334567899999999999999999999999999999999998754 57999999999999999996 999999999999
Q ss_pred EeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhcccc-ceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCc
Q 007673 103 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM 181 (593)
Q Consensus 103 v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G-~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~ 181 (593)
|.++. .++|||+|||.++++++|+++|+.|| .|.+|.+..+..|.++|||||+|.+.++|.+|++.+++.
T Consensus 112 v~~~~---------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 112 VSHLT---------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp EEECC---------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred EEECC---------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 99863 56899999999999999999999999 999999999987889999999999999999999999999
Q ss_pred eecCeeEEeccccchhhhHHHHhhccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHH
Q 007673 182 LINDKQVFVGHFLRKQERETVAIKTKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADD 261 (593)
Q Consensus 182 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~ 261 (593)
.+.|+.|.|.++.+.......
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~----------------------------------------------------------- 203 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRT----------------------------------------------------------- 203 (292)
T ss_dssp EETTEECEEEECCCC-----------------------------------------------------------------
T ss_pred EeCCcEEEEEECCCCcccccc-----------------------------------------------------------
Confidence 999999999776543221100
Q ss_pred HHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCC-CCHHHHHHHhhcCCCeeE
Q 007673 262 AAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITS 340 (593)
Q Consensus 262 A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~~~~~l~~~F~~~G~i~~ 340 (593)
.......++|||+|||.. +++++|+++|+.||.|.+
T Consensus 204 -------------------------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~ 240 (292)
T 2ghp_A 204 -------------------------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEK 240 (292)
T ss_dssp ----------------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEE
T ss_pred -------------------------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeE
Confidence 001224568999999999 999999999999999999
Q ss_pred EEEeeCCC--CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 341 CKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 341 v~i~~~~~--g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|+++.+.. |.++|||||+|.+.++|.+|+ .|||..|+|++|.|.|+++|
T Consensus 241 v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 241 INIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp EECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred EEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 99999887 999999999999999999999 99999999999999999875
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2.6e-34 Score=275.33 Aligned_cols=179 Identities=62% Similarity=1.047 Sum_probs=162.3
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
++.++.++++|||||||+++||++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.+|+..+.|+.|
T Consensus 8 p~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i 87 (213)
T 4f02_A 8 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 87 (213)
T ss_dssp -------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccc
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCc
Q 007673 102 RIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGM 181 (593)
Q Consensus 102 ~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~ 181 (593)
++.++...........++|||+|||.++|+++|+++|+.||.|.+|+|..+.. .++|||||+|.+.++|.+|++.|||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 88 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp EEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 99999877766667788999999999999999999999999999999999854 48999999999999999999999999
Q ss_pred eecCeeEEeccccchhhhHH
Q 007673 182 LINDKQVFVGHFLRKQERET 201 (593)
Q Consensus 182 ~~~g~~l~v~~~~~~~~~~~ 201 (593)
.++|+.|.|.++.++..+..
T Consensus 167 ~~~g~~i~V~~a~~~~~~~~ 186 (213)
T 4f02_A 167 LLNDRKVFVGRFKSRKEREA 186 (213)
T ss_dssp EETTEECEEEECCCHHHHHH
T ss_pred EECCEEEEEEEcCCCcccch
Confidence 99999999999987766544
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.98 E-value=2.1e-31 Score=255.09 Aligned_cols=173 Identities=34% Similarity=0.511 Sum_probs=156.5
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
..++|||+|||+++++++|+++|++||.|.+|.++++. +++++|||||+|.+.++|..|++.+++..+.|+.+.+.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 45789999999999999999999999999999999984 68999999999999999999999999999999999999887
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 365 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 365 (593)
....... ...++|||+||+.++|+++|+++|+.||.|.+|+|+.+.. .++|||||+|.+.++|
T Consensus 94 ~~~~~~~----------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~-~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 94 RDPSLRK----------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAA 156 (213)
T ss_dssp CCTHHHH----------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESSHHHH
T ss_pred ccccccc----------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC-CCceEEEEEeCCHHHH
Confidence 6543321 1345799999999999999999999999999999999864 4799999999999999
Q ss_pred HHHHHHhCCceecCeeeEEEeccchHHHHHH
Q 007673 366 SRALAEMNGKMIVSKPLYVAVAQRKEERRAR 396 (593)
Q Consensus 366 ~~A~~~~~~~~~~~~~l~v~~~~~~~~r~~~ 396 (593)
.+|++.|||..|+|++|.|.+++++..+...
T Consensus 157 ~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~ 187 (213)
T 4f02_A 157 ERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 187 (213)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCHHHHHHH
T ss_pred HHHHHHhCCCEECCEEEEEEEcCCCcccchh
Confidence 9999999999999999999999998776554
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.9e-31 Score=241.00 Aligned_cols=164 Identities=29% Similarity=0.544 Sum_probs=155.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
++|||+|||.++|+++|+++|+.||.|.+|++++++. ++++|||||+|.+.++|.+|++.+|+..+.|+.|+|.|+...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999975 679999999999999999999999999999999999999887
Q ss_pred CCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeE
Q 007673 110 PSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQV 188 (593)
Q Consensus 110 ~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l 188 (593)
.........+|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.+||..++|+.|
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 7777778889999999999999999999999999999999998 688999999999999999999999999999999999
Q ss_pred Eecccc
Q 007673 189 FVGHFL 194 (593)
Q Consensus 189 ~v~~~~ 194 (593)
.|.++.
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 998764
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=2.1e-30 Score=238.42 Aligned_cols=163 Identities=31% Similarity=0.567 Sum_probs=152.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.+++..+.|++|+|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC-CCCceeEEEEEEcCHHHHHHHHHHhCCceecC-
Q 007673 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLIND- 185 (593)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g- 185 (593)
.... .....+|+|+|||.++++++|+++|+.||.|..+.+..+. ++.++|||||+|.+.++|.+|++.+||..+.|
T Consensus 82 ~~~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE--SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS--TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc--cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 6533 3456789999999999999999999999999999999985 89999999999999999999999999999977
Q ss_pred -eeEEecc
Q 007673 186 -KQVFVGH 192 (593)
Q Consensus 186 -~~l~v~~ 192 (593)
+.|.|.+
T Consensus 160 ~~~l~V~~ 167 (168)
T 1b7f_A 160 SQPLSVRL 167 (168)
T ss_dssp SSCCEEEE
T ss_pred CeEEEEEe
Confidence 8888865
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.97 E-value=3.3e-30 Score=236.69 Aligned_cols=163 Identities=34% Similarity=0.610 Sum_probs=151.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.+|+..+.|++|+|.|+.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC-CCCceeEEEEEEcCHHHHHHHHHHhCCceecCe
Q 007673 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186 (593)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~-~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~ 186 (593)
... ......+|||+|||.++++++|+++|+.||.|..+++..+. +|.++|||||+|.+.++|.+|++.+||..+.|+
T Consensus 81 ~~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSS--ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCC--GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCc--ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 543 33456789999999999999999999999999999999984 888999999999999999999999999999997
Q ss_pred e--EEecc
Q 007673 187 Q--VFVGH 192 (593)
Q Consensus 187 ~--l~v~~ 192 (593)
. |.|.+
T Consensus 159 ~~~i~v~~ 166 (167)
T 1fxl_A 159 TEPITVKF 166 (167)
T ss_dssp SSCCEEEE
T ss_pred ccceEEEe
Confidence 5 66554
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=2.8e-30 Score=243.98 Aligned_cols=175 Identities=27% Similarity=0.457 Sum_probs=152.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
..+...++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++. ++..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3456789999999999999999999999999999999999999999999999999999999999985 888999999999
Q ss_pred eeccCCCCCC----CCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHh
Q 007673 104 MYSHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 178 (593)
Q Consensus 104 ~~s~~~~~~~----~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l 178 (593)
.|+....... .....+|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~- 165 (196)
T 1l3k_A 87 KRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ- 165 (196)
T ss_dssp EECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-
T ss_pred ecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-
Confidence 9987543322 224578999999999999999999999999999999998 5889999999999999999999976
Q ss_pred CCceecCeeEEeccccchhhhH
Q 007673 179 NGMLINDKQVFVGHFLRKQERE 200 (593)
Q Consensus 179 ~g~~~~g~~l~v~~~~~~~~~~ 200 (593)
++..++|+.|.|.++.++....
T Consensus 166 ~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 166 KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp SCCEETTEECEEEECC------
T ss_pred CCcEECCEEEEEEecCChhHhc
Confidence 7999999999999988776653
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=5.7e-30 Score=245.72 Aligned_cols=171 Identities=22% Similarity=0.477 Sum_probs=154.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..+++|||+|||.++|+++|+++|+.||.|.+|+++++..+++++|||||+|.+.++|.+|++.+|+..|.|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCC---------CCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHH
Q 007673 107 HRDPSI---------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAID 176 (593)
Q Consensus 107 ~~~~~~---------~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~ 176 (593)
...... ......+|||+|||.++++++|+++|+.||.|..|++..+ .+|.++|||||+|.+.++|.+|++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 654321 1235578999999999999999999999999999999998 588999999999999999999999
Q ss_pred HhCCceecCeeEEeccccchh
Q 007673 177 KLNGMLINDKQVFVGHFLRKQ 197 (593)
Q Consensus 177 ~l~g~~~~g~~l~v~~~~~~~ 197 (593)
.||+..++|+.|.|.++....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999998876653
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=1.9e-29 Score=233.52 Aligned_cols=165 Identities=25% Similarity=0.394 Sum_probs=149.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCC--CcccEEEEEecCHHHHHHHHHhcCCcccC---CcEEE
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR--RSLGYGYVNYANPADAARALDVLNFTPLN---NKSIR 102 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~--~s~g~AfV~F~s~e~A~~Al~~ln~~~i~---g~~i~ 102 (593)
.+++|||+|||+++|+++|+++|+.||.|.+|+++++..++ +++|||||+|.+.++|.+|++.+|+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999999887 89999999999999999999999988775 68888
Q ss_pred EeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCce
Q 007673 103 IMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (593)
Q Consensus 103 v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~ 182 (593)
+.++..... .....++|||+|||.++++++|+++|+.||.|.++.+..+.+|.++|||||+|.+.++|.+|++.+||..
T Consensus 82 ~~~~~~~~~-~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKN-NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCC-SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred Ecccccccc-ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 887765432 2335678999999999999999999999999999999999889999999999999999999999999987
Q ss_pred ec---CeeEEeccc
Q 007673 183 IN---DKQVFVGHF 193 (593)
Q Consensus 183 ~~---g~~l~v~~~ 193 (593)
+. ++.|.|.++
T Consensus 161 ~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 161 TMEGCSSPMVVKFA 174 (175)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCCCCeEEEec
Confidence 65 488888764
No 11
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=232.36 Aligned_cols=165 Identities=30% Similarity=0.532 Sum_probs=152.1
Q ss_pred cceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccch
Q 007673 209 NNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKS 288 (593)
Q Consensus 209 ~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~ 288 (593)
++|||+|||.++++++|+++|+.||.|.++.+..+.+++++|||||+|.+.++|..|++.+++..+.|+.+.+.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 46999999999999999999999999999999999889999999999999999999999999999999999999986543
Q ss_pred HHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHH
Q 007673 289 EREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASR 367 (593)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~ 367 (593)
. ......++|||+|||..+++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+
T Consensus 81 ~----------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 81 Q----------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp C----------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred C----------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 2 12335678999999999999999999999999999999988 578899999999999999999
Q ss_pred HHHHhCCceecCeeeEEEeccc
Q 007673 368 ALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 368 A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
|++.|||..++|++|.|.|+++
T Consensus 145 A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 145 AMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHHHHTTCEETTEECEEEESCC
T ss_pred HHHHhCCCccCCcEEEEEecCC
Confidence 9999999999999999999863
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=8.1e-29 Score=237.66 Aligned_cols=177 Identities=23% Similarity=0.398 Sum_probs=154.8
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a 284 (593)
...++|||+|||.++++++|+++|+.||.|.++.++++. +++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346789999999999999999999999999999999885 7889999999999999999999999999999999999998
Q ss_pred ccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHH
Q 007673 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPE 363 (593)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~ 363 (593)
............. .......++|||+|||.++++++|+++|+.||.|.+|+++.+ .+|.++|||||+|.+.+
T Consensus 106 ~~~~~~~~~~~~~-------~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~ 178 (216)
T 2qfj_A 106 SNIGQAQPIIDQL-------AEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ 178 (216)
T ss_dssp SCCGGGHHHHHHH-------HHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred CCccccchhhhhh-------hcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH
Confidence 7765443322111 112235678999999999999999999999999999999988 47889999999999999
Q ss_pred HHHHHHHHhCCceecCeeeEEEeccc
Q 007673 364 EASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 364 ~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
+|.+|++.|||..|+|+.|.|.|+..
T Consensus 179 ~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 179 SSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp HHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred HHHHHHHHccCCEeCCcEEEEEEecC
Confidence 99999999999999999999999874
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=4.2e-30 Score=236.22 Aligned_cols=164 Identities=22% Similarity=0.504 Sum_probs=150.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
++++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++. ...+.|+.|++.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999995 468899999999876
Q ss_pred CCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCe
Q 007673 108 RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDK 186 (593)
Q Consensus 108 ~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~ 186 (593)
... .....++|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++ +++..++|+
T Consensus 80 ~~~--~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 80 PRD--EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CHH--HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred chh--hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 432 2234568999999999999999999999999999999998 579999999999999999999997 899999999
Q ss_pred eEEeccccch
Q 007673 187 QVFVGHFLRK 196 (593)
Q Consensus 187 ~l~v~~~~~~ 196 (593)
.|.|.++.++
T Consensus 157 ~i~V~~a~pk 166 (167)
T 2cjk_A 157 KIEIKRAEPR 166 (167)
T ss_dssp CEEEEECCCC
T ss_pred EEEEeecCCC
Confidence 9999987654
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=8.9e-29 Score=227.11 Aligned_cols=162 Identities=32% Similarity=0.603 Sum_probs=149.4
Q ss_pred ccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecccc
Q 007673 208 FNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (593)
Q Consensus 208 ~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~ 286 (593)
.++|||+|||.++++++|+++|+.||.|.++.++++. +|.++|||||+|.+.++|..|++.+++..+.|+.+.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 4789999999999999999999999999999999986 789999999999999999999999999999999999999875
Q ss_pred chHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHH
Q 007673 287 KSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEA 365 (593)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A 365 (593)
... ....++|||+|||..+++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|
T Consensus 82 ~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 82 SSA------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 143 (167)
T ss_dssp CCG------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Ccc------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHH
Confidence 432 1245689999999999999999999999999999999885 788999999999999999
Q ss_pred HHHHHHhCCceecCee--eEEEec
Q 007673 366 SRALAEMNGKMIVSKP--LYVAVA 387 (593)
Q Consensus 366 ~~A~~~~~~~~~~~~~--l~v~~~ 387 (593)
.+|++.|||..++|+. |.|.||
T Consensus 144 ~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 144 EEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHhcCCccCCCccceEEEeC
Confidence 9999999999999965 888876
No 15
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=6.3e-29 Score=228.49 Aligned_cols=163 Identities=31% Similarity=0.560 Sum_probs=150.7
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
..++|||+|||.++++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|..|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35789999999999999999999999999999999884 68899999999999999999999999999999999999987
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 364 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 364 (593)
.... ....++|||+|||..+++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++
T Consensus 82 ~~~~------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~ 143 (168)
T 1b7f_A 82 PGGE------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREE 143 (168)
T ss_dssp CCSS------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred CCcc------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHH
Confidence 5532 2245789999999999999999999999999999999986 78899999999999999
Q ss_pred HHHHHHHhCCceecC--eeeEEEec
Q 007673 365 ASRALAEMNGKMIVS--KPLYVAVA 387 (593)
Q Consensus 365 A~~A~~~~~~~~~~~--~~l~v~~~ 387 (593)
|.+|++.|||..+.| ++|.|.||
T Consensus 144 A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 144 AQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999977 99999986
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.96 E-value=1.6e-29 Score=234.31 Aligned_cols=167 Identities=20% Similarity=0.310 Sum_probs=150.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
..+...++|||+|||.++|+++|+++|+.||.|.. .++++..+++++|||||+|.+.++|.+|++ +|+..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 45567899999999999999999999999998777 345555678899999999999999999995 9999999999999
Q ss_pred eeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCcee
Q 007673 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLI 183 (593)
Q Consensus 104 ~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~ 183 (593)
.|+............+|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..+
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 99987766666778899999999999999999999999988766 56788999999999999999999999999999
Q ss_pred cCeeEEeccccch
Q 007673 184 NDKQVFVGHFLRK 196 (593)
Q Consensus 184 ~g~~l~v~~~~~~ 196 (593)
.|+.|.|.++.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999887654
No 17
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=1.4e-28 Score=232.20 Aligned_cols=176 Identities=24% Similarity=0.463 Sum_probs=148.4
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCC-CCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDG-DGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a 284 (593)
...++|||+|||.++++++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|..|++. ++..+.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 456789999999999999999999999999999999985 588999999999999999999975 899999999999998
Q ss_pred ccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHH
Q 007673 285 QKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPE 363 (593)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~ 363 (593)
........ .......++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.+
T Consensus 90 ~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~ 157 (196)
T 1l3k_A 90 VSREDSQR------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 157 (196)
T ss_dssp CC-----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH
T ss_pred cCcccccc------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH
Confidence 76543221 1122345789999999999999999999999999999999885 7889999999999999
Q ss_pred HHHHHHHHhCCceecCeeeEEEeccchHHHHH
Q 007673 364 EASRALAEMNGKMIVSKPLYVAVAQRKEERRA 395 (593)
Q Consensus 364 ~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r~~ 395 (593)
+|.+|+.. +|..++|+.|.|.++.+++....
T Consensus 158 ~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~~ 188 (196)
T 1l3k_A 158 SVDKIVIQ-KYHTVNGHNCEVRKALSKQEMAS 188 (196)
T ss_dssp HHHHHHHC-SCCEETTEECEEEECC-------
T ss_pred HHHHHHHh-CCcEECCEEEEEEecCChhHhcc
Confidence 99999986 89999999999999998876643
No 18
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1.7e-28 Score=227.11 Aligned_cols=165 Identities=27% Similarity=0.503 Sum_probs=147.4
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCC---CcceeEEEEeCCHHHHHHHHHHHCCCccC---CceEE
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDG---KSKCFGFVNFENADDAAKAVEALNGKKFD---DREWY 280 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g---~~~g~afV~F~~~e~A~~Ai~~l~g~~~~---~~~l~ 280 (593)
..++|||+|||.++++++|+++|++||.|.++.++++..+ +++|||||+|.+.++|..|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3578999999999999999999999999999999998765 79999999999999999999999998875 56777
Q ss_pred EeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeC
Q 007673 281 VGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFS 360 (593)
Q Consensus 281 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~ 360 (593)
+.++..... .....++|||+|||..+|+++|+++|++||.|.+++++.+.+|.++|||||+|.
T Consensus 82 ~~~~~~~~~-----------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKN-----------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCC-----------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEES
T ss_pred Ecccccccc-----------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEEC
Confidence 776644322 123556899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCCceec---CeeeEEEecc
Q 007673 361 TPEEASRALAEMNGKMIV---SKPLYVAVAQ 388 (593)
Q Consensus 361 ~~~~A~~A~~~~~~~~~~---~~~l~v~~~~ 388 (593)
+.++|.+|++.|||..+. +++|.|.||.
T Consensus 145 ~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999998776 4999999984
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.96 E-value=4.6e-28 Score=242.67 Aligned_cols=175 Identities=22% Similarity=0.314 Sum_probs=161.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
...++|||+|||+++|+++|+++|+.||.|.+|+++++..+++++|||||+|.+.++|.+|++.+++..+.|+.|+|.|+
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCC-CCCCCccEEEeCCCccc-CHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceec
Q 007673 107 HRDPSI-RKSGTGNIFIKNLDKSI-DHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN 184 (593)
Q Consensus 107 ~~~~~~-~~~~~~~lfV~nLp~~~-t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~ 184 (593)
...... ......+|||+|||.++ ++++|+++|+.||.|.+|++..+.+|.++|+|||+|.+.++|.+|++.+||..+.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 765432 23456789999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEeccccchhhhHH
Q 007673 185 DKQVFVGHFLRKQERET 201 (593)
Q Consensus 185 g~~l~v~~~~~~~~~~~ 201 (593)
|+.|.|.++.++..+..
T Consensus 253 g~~l~v~~a~~~~~~~~ 269 (284)
T 3smz_A 253 GSHLRVSFCAPGPPGRS 269 (284)
T ss_dssp TEECEEEECCSSSCHHH
T ss_pred CeEEEEEEecCCCcccc
Confidence 99999999987766543
No 20
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=8.9e-29 Score=227.32 Aligned_cols=163 Identities=25% Similarity=0.526 Sum_probs=147.9
Q ss_pred cccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeC-CCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRD-GDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~-~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
..++|||+|||.++++++|+++|+.||.|.++.++++ .+|.++|||||+|.+.++|..|++ ++..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 3578999999999999999999999999999999988 468999999999999999999998 4678999999998876
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEE 364 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~ 364 (593)
.+.... ..++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++
T Consensus 80 ~~~~~~------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 141 (167)
T 2cjk_A 80 PRDEQD------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 141 (167)
T ss_dssp CHHHHH------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHH
T ss_pred chhhcc------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 543321 34589999999999999999999999999999999884 78999999999999999
Q ss_pred HHHHHHHhCCceecCeeeEEEeccch
Q 007673 365 ASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 365 A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|.+|++ ++|..++|++|.|.|+.++
T Consensus 142 a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 142 VDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred HHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 999998 8999999999999999875
No 21
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=7.6e-28 Score=222.21 Aligned_cols=157 Identities=24% Similarity=0.533 Sum_probs=143.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQV----G-------QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL 96 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~----G-------~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i 96 (593)
++++|||+|||+++|+++|+++|+.| | .|.++++.+ ++|||||+|.+.++|.+|+ .+|+..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 57899999999999999999999999 6 778877754 4689999999999999999 7999999
Q ss_pred CCcEEEEeeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHH
Q 007673 97 NNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 175 (593)
Q Consensus 97 ~g~~i~v~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al 175 (593)
.|+.|+|.++.... ......+|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.++|||||+|.+.++|.+|+
T Consensus 76 ~g~~i~v~~~~~~~--~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~ 153 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ--PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAI 153 (172)
T ss_dssp TTEECEEECCSSCC--CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHH
T ss_pred cCceeeecCCcccC--CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 99999999876543 2345788999999999999999999999999999999999 58999999999999999999999
Q ss_pred HHhCCceecCeeEEeccc
Q 007673 176 DKLNGMLINDKQVFVGHF 193 (593)
Q Consensus 176 ~~l~g~~~~g~~l~v~~~ 193 (593)
+.+||..++|+.|.|.++
T Consensus 154 ~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 154 AGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp HHHTTCEETTEECEEEEC
T ss_pred HHcCCCEECCeEEEEEeC
Confidence 999999999999999865
No 22
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=4.3e-28 Score=229.66 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=136.0
Q ss_pred CccEEEEeCCC-CCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 28 LTTSLYVGDLD-FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 28 ~~~sL~V~nLp-~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
++++|||+||| .++|+++|+++|+.||.|.+|++.++ ++|||||+|.+.++|++|++.||+..+.|+.|+|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999875 3589999999999999999999999999999999998
Q ss_pred cCCCCCC-----------------------------------CCCCccEEEeCCCcccCHHHHHhhhccccce--EEEEE
Q 007673 107 HRDPSIR-----------------------------------KSGTGNIFIKNLDKSIDHKALHDTFSSFGNI--LSCKI 149 (593)
Q Consensus 107 ~~~~~~~-----------------------------------~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i--~~~~i 149 (593)
....... .....+|||+|||.++|+++|+++|+.||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6321100 0123469999999999999999999999999 89999
Q ss_pred eeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCee
Q 007673 150 ATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQ 187 (593)
Q Consensus 150 ~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~ 187 (593)
..+. +.++|+|||+|.+.++|.+|+..|||..+.|+.
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 8875 556799999999999999999999999998763
No 23
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=9.4e-28 Score=226.95 Aligned_cols=163 Identities=23% Similarity=0.511 Sum_probs=144.9
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQV----G-------QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL 96 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~----G-------~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i 96 (593)
.+++|||+|||+++|+++|+++|+.| | .|.++++ ++++|||||+|.+.++|.+|+ .+|+..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 57899999999999999999999999 5 6666665 356799999999999999999 7999999
Q ss_pred CCcEEEEeeccCCCCC------------------CCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCc
Q 007673 97 NNKSIRIMYSHRDPSI------------------RKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQS 157 (593)
Q Consensus 97 ~g~~i~v~~s~~~~~~------------------~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s 157 (593)
.|+.|+|.|+...... ......+|||+|||.++++++|+++|+.||.|.+|.+..+ .+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 9999999998654211 1245678999999999999999999999999999999999 48999
Q ss_pred eeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchh
Q 007673 158 KGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197 (593)
Q Consensus 158 ~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 197 (593)
+|||||+|.+.++|.+|++.++|..++|+.|.|.++.++.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999876543
No 24
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=2.2e-27 Score=237.50 Aligned_cols=163 Identities=23% Similarity=0.419 Sum_probs=145.6
Q ss_pred CCCCccEEEEeCCCCCCCHHHHH----HHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLY----DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~----~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
...++++|||+|||+++|+++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 34668999999999999999966 8999999999999987 6789999999999999999999999999999999
Q ss_pred EEEeeccCCCC---------------------------------------------------------------------
Q 007673 101 IRIMYSHRDPS--------------------------------------------------------------------- 111 (593)
Q Consensus 101 i~v~~s~~~~~--------------------------------------------------------------------- 111 (593)
|+|.|+.....
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999865432
Q ss_pred ----------------------------------------CCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEee
Q 007673 112 ----------------------------------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT 151 (593)
Q Consensus 112 ----------------------------------------~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~ 151 (593)
.......+|||+|||.++++++|+++|+.||.|.+|++..
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 0111346799999999999999999999999999999986
Q ss_pred CCCCCceeEEEEEEcCHHHHHHHHHHhCCceec-CeeEEecccc
Q 007673 152 DGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFL 194 (593)
Q Consensus 152 ~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~-g~~l~v~~~~ 194 (593)
+ .+|||||+|.+.++|.+|++.|||..+. |+.|.|.++.
T Consensus 242 ~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 G----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 5 3689999999999999999999999999 9999998764
No 25
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=2.7e-27 Score=229.09 Aligned_cols=165 Identities=22% Similarity=0.244 Sum_probs=145.7
Q ss_pred CCCCCCCccEEEEeCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 22 ASGNQFLTTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~-~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
.+.+...+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.+|+..|.|+.
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 334456789999999999 99999999999999999999999875 589999999999999999999999999999
Q ss_pred EEEeeccCCCCC---------------------------------CCCCCccEEEeCCCcccCHHHHHhhhcccc-ceEE
Q 007673 101 IRIMYSHRDPSI---------------------------------RKSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILS 146 (593)
Q Consensus 101 i~v~~s~~~~~~---------------------------------~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G-~i~~ 146 (593)
|+|.|+...... ......+|||+|||.++++++|+++|+.|| .|.+
T Consensus 102 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~ 181 (229)
T 2adc_A 102 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 181 (229)
T ss_dssp CEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEE
T ss_pred EEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeE
Confidence 999988643110 012256799999999999999999999999 9999
Q ss_pred EEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceec-CeeEEeccccc
Q 007673 147 CKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLR 195 (593)
Q Consensus 147 ~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~-g~~l~v~~~~~ 195 (593)
|++..+ ++|||||+|.+.++|.+|++.|+|..+. |+.|.|.++.+
T Consensus 182 v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 182 FKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 999764 4789999999999999999999999999 99999988754
No 26
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.95 E-value=3.9e-29 Score=191.74 Aligned_cols=78 Identities=79% Similarity=1.074 Sum_probs=73.9
Q ss_pred cccchhhhcCCCHHHHHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHHHHHHhh
Q 007673 496 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 573 (593)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~~~~~~ 573 (593)
...++++|+++++++||++|||+|||+|++++|++|+||||||||||++||++||+|+++|++||+||++||++++++
T Consensus 7 ~~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~~ 84 (85)
T 2dyd_A 7 IGALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQH 84 (85)
T ss_dssp TTTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSSC
T ss_pred hhhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhhc
Confidence 345889999999999999999999999999999999999999999999999999999999999999999999987643
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.95 E-value=2.2e-27 Score=224.80 Aligned_cols=176 Identities=17% Similarity=0.234 Sum_probs=142.5
Q ss_pred cccceeccCCC-CCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 207 KFNNVFVKNLD-ESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 207 ~~~~l~V~nlp-~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
..++|||+||+ ..+++++|+++|+.||.|.+|.++++ .+|||||+|.+.++|..|++.|+|..+.|+.|.|.++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 35789999999 89999999999999999999999875 37899999999999999999999999999999999886
Q ss_pred cchHHHHH---Hh------hhHHhh----------hhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCe--eEEEEe
Q 007673 286 KKSEREQE---LK------GQFEQA----------MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTI--TSCKVM 344 (593)
Q Consensus 286 ~~~~~~~~---~~------~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i--~~v~i~ 344 (593)
.+...... .. ..+... ........++++|||+|||+++|+++|+++|++||.| .+++++
T Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 79 QPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp CSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 43210000 00 000000 0000012356789999999999999999999999999 899998
Q ss_pred eCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe----eeEEEec
Q 007673 345 RDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK----PLYVAVA 387 (593)
Q Consensus 345 ~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~----~l~v~~~ 387 (593)
.+. |.++|+|||+|.+.++|.+|+..|||..|.|+ ++.|.|+
T Consensus 159 ~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 876 55679999999999999999999999999876 6777764
No 28
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.95 E-value=2.4e-28 Score=190.32 Aligned_cols=79 Identities=33% Similarity=0.431 Sum_probs=75.3
Q ss_pred cccchhhhcCCCHHHHHHHhhhcchhhHhh--hcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHHHHHHhh
Q 007673 496 ITALSTALANASPEQQRTLLGESLYPLVEQ--LERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQ 573 (593)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~lg~~l~~~v~~--~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~~~~~~ 573 (593)
.+.++++|+++++++||++|||+|||+|++ ++|++|+||||||||||++||++||+|+++|++||+||++||+++++.
T Consensus 5 ~p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~ 84 (92)
T 1ifw_A 5 SPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKE 84 (92)
T ss_dssp CSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 356889999999999999999999999999 999999999999999999999999999999999999999999999864
Q ss_pred h
Q 007673 574 Q 574 (593)
Q Consensus 574 ~ 574 (593)
+
T Consensus 85 ~ 85 (92)
T 1ifw_A 85 Q 85 (92)
T ss_dssp C
T ss_pred h
Confidence 4
No 29
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=4.9e-27 Score=216.76 Aligned_cols=158 Identities=24% Similarity=0.476 Sum_probs=142.2
Q ss_pred cccceeccCCCCCCCHHHHHHhhccC----C-------CeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccC
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~----G-------~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~ 275 (593)
..++|||+|||.++++++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|..|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 35789999999999999999999999 6 677776654 4899999999999999999 89999999
Q ss_pred CceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccE
Q 007673 276 DREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGS 354 (593)
Q Consensus 276 ~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~ 354 (593)
|+.+.+.++..... ....++|||+|||.++++++|+++|++||.|.+++++.+. +|.++||
T Consensus 77 g~~i~v~~~~~~~~------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~ 138 (172)
T 2g4b_A 77 GQSLKIRRPHDYQP------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGY 138 (172)
T ss_dssp TEECEEECCSSCCC------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEE
T ss_pred CceeeecCCcccCC------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceE
Confidence 99999998754321 1235789999999999999999999999999999999984 8999999
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 355 GFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 355 afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
|||+|.+.++|.+|++.|||..++|++|.|.||.
T Consensus 139 afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 139 AFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp EEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 9999999999999999999999999999999873
No 30
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=5.1e-27 Score=236.05 Aligned_cols=167 Identities=22% Similarity=0.343 Sum_probs=146.4
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..++|||+|||+++++++|+++|+.|| .|.+|++.++.. ++++|||||+|.+.++|.+|++.||+..+.|+.|+|.|+
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 999999999876 788999999999999999999999999999999999998
Q ss_pred cCCCCC-----CCCCCccEEEeCCCcc-cCHHHHHhhhccccceEEEEEeeCCC--CCceeEEEEEEcCHHHHHHHHHHh
Q 007673 107 HRDPSI-----RKSGTGNIFIKNLDKS-IDHKALHDTFSSFGNILSCKIATDGS--GQSKGFGFVQFENKESAQNAIDKL 178 (593)
Q Consensus 107 ~~~~~~-----~~~~~~~lfV~nLp~~-~t~~~L~~~f~~~G~i~~~~i~~~~~--g~s~g~afV~F~~~e~A~~Al~~l 178 (593)
...... ......+|||+|||.+ +++++|+++|+.||.|.+|++..+.. |.++|||||+|.+.++|.+|+ .+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 754432 2335678999999999 99999999999999999999999876 999999999999999999999 99
Q ss_pred CCceecCeeEEeccccch
Q 007673 179 NGMLINDKQVFVGHFLRK 196 (593)
Q Consensus 179 ~g~~~~g~~l~v~~~~~~ 196 (593)
||..+.|+.|.|.++.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999987654
No 31
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=6.5e-28 Score=223.39 Aligned_cols=164 Identities=27% Similarity=0.397 Sum_probs=144.4
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
...++|||+|||.++++++|+++|+.||.+..+.+.....+.++|||||+|.+.++|..|+ .+++..+.|+.|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCC
Confidence 3567899999999999999999999999876644444456788999999999999999999 599999999999999987
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 365 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 365 (593)
.+... .....++|||+|||.++++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|
T Consensus 90 ~~~~~----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 90 GRDSK----------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp CSSCS----------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHH
T ss_pred Ccccc----------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHH
Confidence 65321 12245789999999999999999999999988766 66788999999999999999
Q ss_pred HHHHHHhCCceecCeeeEEEeccch
Q 007673 366 SRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 366 ~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
.+|++.|||..++|+.|.|.|+.++
T Consensus 150 ~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 150 EKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHHHhCCCEECCeEEEEEecCCC
Confidence 9999999999999999999999865
No 32
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=1.4e-26 Score=231.74 Aligned_cols=178 Identities=22% Similarity=0.402 Sum_probs=147.5
Q ss_pred ccccceeccCCCCCCCHHHHH----HhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEE
Q 007673 206 TKFNNVFVKNLDESTTDEDLK----KIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYV 281 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~----~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v 281 (593)
...++|||+|||.++++++|+ ++|+.||.|.+|.+.+ +++++|||||+|.+.++|..|++.+++..+.|+.|.|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 346789999999999999966 9999999999999886 6778999999999999999999999999999999999
Q ss_pred eccccchHHHHHHhhhHH------------------hhh-----------------------------------------
Q 007673 282 GKAQKKSEREQELKGQFE------------------QAM----------------------------------------- 302 (593)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~------------------~~~----------------------------------------- 302 (593)
.++..+............ ...
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 998665431110000000 000
Q ss_pred ----------------------------------hhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC
Q 007673 303 ----------------------------------KETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS 348 (593)
Q Consensus 303 ----------------------------------~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~ 348 (593)
........+++|||+|||..+++++|+++|+.||.|.+|+++.+.
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~- 243 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR- 243 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-
Confidence 000122356789999999999999999999999999999999763
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhCCceec-CeeeEEEeccc
Q 007673 349 GISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQR 389 (593)
Q Consensus 349 g~~~g~afV~f~~~~~A~~A~~~~~~~~~~-~~~l~v~~~~~ 389 (593)
+|||||+|.+.++|.+|++.|||..|+ |+.|.|.|++.
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 579999999999999999999999999 99999999863
No 33
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=1.6e-26 Score=228.17 Aligned_cols=159 Identities=25% Similarity=0.456 Sum_probs=144.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++|+++|+++|+.||.|.+|++.+ ++|||||.|.+.++|.+|++.+|+..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345678999999999999999999999999999999964 46899999999999999999999999999999999
Q ss_pred eccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhC-Ccee
Q 007673 105 YSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLN-GMLI 183 (593)
Q Consensus 105 ~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~-g~~~ 183 (593)
|+.. ..+|||+|||.++|+++|+++|+.||.|.+|.+..+.+|.++|||||+|.+.++|.+|+..++ +..+
T Consensus 92 ~a~~--------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 92 FATH--------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp ECCC--------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred eccc--------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 9864 468999999999999999999999999999999999999999999999999999999999994 4454
Q ss_pred c---CeeEEeccccchh
Q 007673 184 N---DKQVFVGHFLRKQ 197 (593)
Q Consensus 184 ~---g~~l~v~~~~~~~ 197 (593)
. ++.+.|.+.....
T Consensus 164 ~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 164 LTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SSSSCCBCEEEECCCEE
T ss_pred ecCCCceEEEeeccccC
Confidence 4 8999998876543
No 34
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.94 E-value=3.9e-27 Score=199.44 Aligned_cols=78 Identities=45% Similarity=0.793 Sum_probs=74.8
Q ss_pred ccchhhhcCCCHHHHHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHHHHHHhhh
Q 007673 497 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQ 574 (593)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~~~~~~~ 574 (593)
+.++++|+++++++||++|||+|||+|.+++|++|+||||||||||++|||+||+|+++|++||+||++||+++++++
T Consensus 52 pl~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~ 129 (144)
T 1g9l_A 52 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE 129 (144)
T ss_dssp CCSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSST
T ss_pred hhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999998654
No 35
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=8e-27 Score=220.66 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=141.8
Q ss_pred ccEEEEeCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 29 TTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 29 ~~sL~V~nLp~-~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.||+..+.|+.|+|.|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998875 5899999999999999999999999999999999987
Q ss_pred CCCCCC---------------------------------CCCCccEEEeCCCcccCHHHHHhhhcccc-ceEEEEEeeCC
Q 007673 108 RDPSIR---------------------------------KSGTGNIFIKNLDKSIDHKALHDTFSSFG-NILSCKIATDG 153 (593)
Q Consensus 108 ~~~~~~---------------------------------~~~~~~lfV~nLp~~~t~~~L~~~f~~~G-~i~~~~i~~~~ 153 (593)
...... .....+|||+|||.++++++|+++|+.|| .|.+|++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 442100 12266799999999999999999999999 9999999764
Q ss_pred CCCceeEEEEEEcCHHHHHHHHHHhCCceec-CeeEEeccccc
Q 007673 154 SGQSKGFGFVQFENKESAQNAIDKLNGMLIN-DKQVFVGHFLR 195 (593)
Q Consensus 154 ~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~-g~~l~v~~~~~ 195 (593)
++|+|||+|.+.++|.+|++.+||..++ |+.|.|.+..+
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 4789999999999999999999999999 99999988654
No 36
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.94 E-value=1.7e-27 Score=184.65 Aligned_cols=79 Identities=46% Similarity=0.793 Sum_probs=75.1
Q ss_pred ccchhhhcCCCHHHHHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHHHHHHhhhc
Q 007673 497 TALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQQA 575 (593)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~~~~~~~~ 575 (593)
+.++++|++++|++||++|||+|||+|++++|++|+||||||||||++||++||+|++.|++||+||++||+.++.++.
T Consensus 6 ~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 6 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999988763
No 37
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.94 E-value=3.1e-28 Score=186.73 Aligned_cols=76 Identities=55% Similarity=0.746 Sum_probs=72.9
Q ss_pred cccchhhhcCCCHHHHHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007673 496 ITALSTALANASPEQQRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVA 571 (593)
Q Consensus 496 ~~~~~~~l~~~~~~~~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~~~~ 571 (593)
.+.++++|+++++++||++|||+|||+|++++|++|+||||||||||++||++||+|+++|++||+||++||++++
T Consensus 8 ~~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 8 GQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp CCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred CccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999999999999999999999999999999999999999998764
No 38
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.94 E-value=3.1e-26 Score=221.63 Aligned_cols=177 Identities=21% Similarity=0.320 Sum_probs=146.3
Q ss_pred ccccceeccCCCC-CCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecc
Q 007673 206 TKFNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKA 284 (593)
Q Consensus 206 ~~~~~l~V~nlp~-~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a 284 (593)
...++|||+|||. ++++++|+++|+.||.|.++.+.++. +|||||+|.+.++|..|++.+++..+.|+.|.|.++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4567899999999 99999999999999999999999875 689999999999999999999999999999999988
Q ss_pred ccchHHH-------HHHhhhHHhh----------hhhhhcccccceeeeccCCCCCCHHHHHHHhhcCC-CeeEEEEeeC
Q 007673 285 QKKSERE-------QELKGQFEQA----------MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRD 346 (593)
Q Consensus 285 ~~~~~~~-------~~~~~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G-~i~~v~i~~~ 346 (593)
....... ......+... ........+.++|||+|||..+++++|+++|+.|| .|.+|+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 108 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp SCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred cCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 6442100 0000000000 00001123468899999999999999999999999 9999999764
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHhCCceec-CeeeEEEeccch
Q 007673 347 PSGISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRK 390 (593)
Q Consensus 347 ~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~-~~~l~v~~~~~~ 390 (593)
++|||||+|.+.++|.+|++.|||..++ |++|.|.|++++
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3789999999999999999999999999 999999999753
No 39
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=8.5e-26 Score=223.03 Aligned_cols=156 Identities=31% Similarity=0.547 Sum_probs=143.5
Q ss_pred ccccceeccCCCCCCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccc
Q 007673 206 TKFNNVFVKNLDESTTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQ 285 (593)
Q Consensus 206 ~~~~~l~V~nlp~~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~ 285 (593)
...++|||+|||.++++++|+++|+.||.|.++.+.++ +|||||+|.+.++|..|+..+++..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 34578999999999999999999999999999999654 7899999999999999999999999999999999875
Q ss_pred cchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHH
Q 007673 286 KKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEA 365 (593)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 365 (593)
. +++|||+|||..+|+++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|
T Consensus 95 ~------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 95 H------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp C------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred c------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 2 4589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC-Cceec---CeeeEEEeccch
Q 007673 366 SRALAEMN-GKMIV---SKPLYVAVAQRK 390 (593)
Q Consensus 366 ~~A~~~~~-~~~~~---~~~l~v~~~~~~ 390 (593)
.+|+..|| +..+. +++|.|.++...
T Consensus 151 ~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 151 RKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 99999995 55554 999999998754
No 40
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.93 E-value=1.8e-26 Score=218.15 Aligned_cols=178 Identities=22% Similarity=0.416 Sum_probs=145.6
Q ss_pred cccceeccCCCCCCCHHHHHHhhccC----C-------CeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccC
Q 007673 207 KFNNVFVKNLDESTTDEDLKKIFGEY----G-------TITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFD 275 (593)
Q Consensus 207 ~~~~l~V~nlp~~~te~~l~~~F~~~----G-------~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~ 275 (593)
..++|||+|||.++++++|+++|+.| | .|.++.+. +++|||||+|.+.++|..|+ .+++..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-----~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-----TTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-----CCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 35789999999999999999999999 5 55555553 45899999999999999999 79999999
Q ss_pred CceEEEeccccchHHHHHHhh--hHHhhhhhhhcccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCc
Q 007673 276 DREWYVGKAQKKSEREQELKG--QFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISK 352 (593)
Q Consensus 276 ~~~l~v~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~ 352 (593)
|+.|.|.++............ ...............++|||+|||..+++++|+++|+.||.|.+++++.+. +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 999999988654221100000 000000111122456899999999999999999999999999999999985 88899
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 353 GSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 353 g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|||||+|.+.++|.+|++.|||..++|+.|.|.++.++
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999999999999999999999999765
No 41
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=3.4e-26 Score=216.35 Aligned_cols=175 Identities=21% Similarity=0.321 Sum_probs=144.7
Q ss_pred ccceeccCCCC-CCCHHHHHHhhccCCCeeEEEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEecccc
Q 007673 208 FNNVFVKNLDE-STTDEDLKKIFGEYGTITSAVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQK 286 (593)
Q Consensus 208 ~~~l~V~nlp~-~~te~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~ 286 (593)
.++|||+|||. .+++++|+++|+.||.|.++.+..+. +|||||+|.+.++|..|++.+++..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 46899999999 99999999999999999999998874 67999999999999999999999999999999998865
Q ss_pred chHHHHH-------HhhhHHhh----------hhhhhcccccceeeeccCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCC
Q 007673 287 KSEREQE-------LKGQFEQA----------MKETVDKFQGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPS 348 (593)
Q Consensus 287 ~~~~~~~-------~~~~~~~~----------~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G-~i~~v~i~~~~~ 348 (593)
....... ....+... ........+.++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-- 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--
Confidence 4211000 00000000 00001123478899999999999999999999999 9999999775
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHhCCceec-CeeeEEEeccch
Q 007673 349 GISKGSGFVAFSTPEEASRALAEMNGKMIV-SKPLYVAVAQRK 390 (593)
Q Consensus 349 g~~~g~afV~f~~~~~A~~A~~~~~~~~~~-~~~l~v~~~~~~ 390 (593)
.+|+|||+|.+.++|.+|+..|||..++ |++|.|.|++++
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3789999999999999999999999999 999999998753
No 42
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.91 E-value=1.2e-25 Score=161.81 Aligned_cols=60 Identities=45% Similarity=0.720 Sum_probs=58.7
Q ss_pred HHHHhhhcchhhHhhhcCCcccchhhhhcCCCHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007673 511 QRTLLGESLYPLVEQLERDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 570 (593)
Q Consensus 511 ~~~~lg~~l~~~v~~~~~~~a~kitgmll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~~~ 570 (593)
||++|||+|||+|++++|++|+||||||||||++||++||+|+++|++||+||+++|+++
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999999999999999999999999999876
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.84 E-value=8e-21 Score=162.39 Aligned_cols=103 Identities=28% Similarity=0.492 Sum_probs=74.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~ 108 (593)
+++|||+|||+++||++|+++|+.||.|.+|+|++|.. .++|||||+|.+.++|++|++.||+..|.|+.|+|.|+..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 56899999999999999999999999999999999964 5889999999999999999999999999999999999865
Q ss_pred CCC------CCCCCCccEEEeCCCcccCHHH
Q 007673 109 DPS------IRKSGTGNIFIKNLDKSIDHKA 133 (593)
Q Consensus 109 ~~~------~~~~~~~~lfV~nLp~~~t~~~ 133 (593)
... .+.....+|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 432 1223456799999999998864
No 44
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.83 E-value=1.8e-20 Score=170.19 Aligned_cols=147 Identities=21% Similarity=0.274 Sum_probs=112.4
Q ss_pred EEEeeCCCCCcceeEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeec
Q 007673 238 AVVMRDGDGKSKCFGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIK 317 (593)
Q Consensus 238 v~i~~~~~g~~~g~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 317 (593)
+.++.+.. +++||+||+|.+.++|.+|+..+++....+..+.+........... ..............++|||+
T Consensus 3 ~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~v~ 76 (158)
T 2kn4_A 3 YKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTE-----GSHHHHHHMDVEGMTSLKVD 76 (158)
T ss_dssp EEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEEC-----CCCCSSCCCCCCBCCEEEEE
T ss_pred EEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccc-----cccccccccCCCCCCEEEEe
Confidence 45555543 6899999999999999999988876554444443332221100000 00000111223456799999
Q ss_pred cCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 318 NLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 318 nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..++|++|.|.|++.+
T Consensus 77 nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 77 NLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 999999999999999999999999999984 7899999999999999999999999999999999999999754
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=7.2e-20 Score=151.71 Aligned_cols=82 Identities=41% Similarity=0.645 Sum_probs=78.6
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
.+.++|||+|||+++||++|+++|+.||.|.+|++.+|+.+++++|||||+|.+.++|.+|++.||+..|.|++|+|.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 007673 107 HR 108 (593)
Q Consensus 107 ~~ 108 (593)
..
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 53
No 46
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2.3e-19 Score=162.78 Aligned_cols=138 Identities=17% Similarity=0.266 Sum_probs=111.9
Q ss_pred EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE-------eeccC----CCCCCCCCCccEEEeCCC
Q 007673 58 SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-------MYSHR----DPSIRKSGTGNIFIKNLD 126 (593)
Q Consensus 58 ~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v-------~~s~~----~~~~~~~~~~~lfV~nLp 126 (593)
++++.++.. +++|||||+|.+.++|++|++.+++....+..+.+ ..... ..........+|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 567778755 68999999999999999999887754322222222 11111 111223446789999999
Q ss_pred cccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccchh
Q 007673 127 KSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRKQ 197 (593)
Q Consensus 127 ~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~~ 197 (593)
.++++++|+++|+.||.|.+|++..+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.++.
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999998 589999999999999999999999999999999999999887654
No 47
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=148.59 Aligned_cols=82 Identities=38% Similarity=0.639 Sum_probs=78.0
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
.+++++|||+|||.++|+++|+++|++||.|.+|+++++. +|.++|||||+|.+.++|.+|++.|||..++|++|.|+|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4678999999999999999999999999999999999885 689999999999999999999999999999999999999
Q ss_pred ccc
Q 007673 387 AQR 389 (593)
Q Consensus 387 ~~~ 389 (593)
|++
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 975
No 48
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=8.8e-20 Score=163.94 Aligned_cols=138 Identities=22% Similarity=0.323 Sum_probs=113.5
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHH-CCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCC
Q 007673 246 GKSKCFGFVNFENADDAAKAVEAL-NGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSID 324 (593)
Q Consensus 246 g~~~g~afV~F~~~e~A~~Ai~~l-~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~ 324 (593)
...+|+++|+|.+.++|.+|++.+ ++..++| .+.+.++..+........ ..............++|||+|||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH--HHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS--SCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc--cccccccccCCCCCCEEEEeCCCCCCC
Confidence 456899999999999999999999 9999999 999998865432110000 000001122334678999999999999
Q ss_pred HHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 325 DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 325 ~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
+++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|+..|||..++|++|.|.|++++
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999999887 6889999999999999999999999999999999999764
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=2.5e-18 Score=145.16 Aligned_cols=90 Identities=12% Similarity=0.274 Sum_probs=82.7
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
.+.++|||+||++++++++|+++|++||.|.+|+|+.|. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356789999999999999999999999999999999986 4899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHH
Q 007673 388 QRKEERRARLQ 398 (593)
Q Consensus 388 ~~~~~r~~~~~ 398 (593)
..+..++...+
T Consensus 84 ~~~~~~~~~~~ 94 (110)
T 3s8s_A 84 IKGQQRMKYYE 94 (110)
T ss_dssp STTHHHHHHHH
T ss_pred CCCcHHHHHHH
Confidence 88877665444
No 50
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=143.51 Aligned_cols=91 Identities=25% Similarity=0.466 Sum_probs=83.4
Q ss_pred CCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc
Q 007673 17 GVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL 96 (593)
Q Consensus 17 ~~~~~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i 96 (593)
+++..+.....+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|
T Consensus 4 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 4 GSSGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCCCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 33444555667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeecc
Q 007673 97 NNKSIRIMYSH 107 (593)
Q Consensus 97 ~g~~i~v~~s~ 107 (593)
.|+.|+|.|++
T Consensus 84 ~g~~l~v~~ak 94 (94)
T 2e5h_A 84 FGRVIKASIAI 94 (94)
T ss_dssp TTEEEEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 51
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.78 E-value=5.2e-19 Score=151.10 Aligned_cols=108 Identities=58% Similarity=0.979 Sum_probs=75.5
Q ss_pred CCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccc
Q 007673 116 GTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLR 195 (593)
Q Consensus 116 ~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~ 195 (593)
+.++|||+|||.++|+++|+++|+.||.|.+|+|..+.. .++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~-~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN-GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT-EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC-CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 456899999999999999999999999999999999854 4899999999999999999999999999999999998876
Q ss_pred hhhhHHHH--hhccccceeccCCCCCCCHHH
Q 007673 196 KQERETVA--IKTKFNNVFVKNLDESTTDED 224 (593)
Q Consensus 196 ~~~~~~~~--~~~~~~~l~V~nlp~~~te~~ 224 (593)
+..+.... .....++|||+|||+++|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC----------------------------
T ss_pred ccccccccccccCCCCceEeCCCCCCccccc
Confidence 65543322 234567899999999998763
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=147.00 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=79.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
.+.++|||+|||+++||++|+++|++||.|.+|+|++|+.|++++|||||+|.+.++|++|++.||+..|.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 007673 107 HRD 109 (593)
Q Consensus 107 ~~~ 109 (593)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=145.57 Aligned_cols=84 Identities=15% Similarity=0.350 Sum_probs=78.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCC--eEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc----ccCC
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ--VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT----PLNN 98 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~--V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~----~i~g 98 (593)
......||||+|||+++||++|+++|++||. |.+|++++|+.|++++|||||+|.+.++|.+|++.||+. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4567899999999999999999999999995 779999999999999999999999999999999999987 4899
Q ss_pred cEEEEeeccC
Q 007673 99 KSIRIMYSHR 108 (593)
Q Consensus 99 ~~i~v~~s~~ 108 (593)
++|+|.|++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 54
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=3.7e-19 Score=145.08 Aligned_cols=82 Identities=21% Similarity=0.363 Sum_probs=76.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC-CcccCCcEEEEeec
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN-FTPLNNKSIRIMYS 106 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln-~~~i~g~~i~v~~s 106 (593)
+++|||+|||+++||++|+++|+.|| .|.+|++++|+.|++++|||||+|.+.++|.+|++.++ +..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999999874 56799999999998
Q ss_pred cCCC
Q 007673 107 HRDP 110 (593)
Q Consensus 107 ~~~~ 110 (593)
...+
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7654
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=143.10 Aligned_cols=91 Identities=27% Similarity=0.495 Sum_probs=84.1
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
+.......++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 007673 102 RIMYSHRDPSI 112 (593)
Q Consensus 102 ~v~~s~~~~~~ 112 (593)
+|.|+......
T Consensus 88 ~v~~a~~~~~~ 98 (105)
T 1x5u_A 88 RVNKASAHNKN 98 (105)
T ss_dssp EEEETTTTSCC
T ss_pred EEEECCCCCcC
Confidence 99999876543
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=143.26 Aligned_cols=90 Identities=31% Similarity=0.509 Sum_probs=83.5
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
+......++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 6 ~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 6 SGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 007673 103 IMYSHRDPSI 112 (593)
Q Consensus 103 v~~s~~~~~~ 112 (593)
|.|+......
T Consensus 86 v~~a~~~~~~ 95 (102)
T 1x5s_A 86 VDQAGKSSDN 95 (102)
T ss_dssp EEEEECCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 57
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=139.22 Aligned_cols=84 Identities=29% Similarity=0.477 Sum_probs=77.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
..+.++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 007673 106 SHRD 109 (593)
Q Consensus 106 s~~~ 109 (593)
+...
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8764
No 58
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.9e-18 Score=140.40 Aligned_cols=88 Identities=28% Similarity=0.390 Sum_probs=82.2
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
.......+.++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..|.|++
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccC
Q 007673 101 IRIMYSHR 108 (593)
Q Consensus 101 i~v~~s~~ 108 (593)
|+|.|+..
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999753
No 59
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.76 E-value=2e-18 Score=155.12 Aligned_cols=124 Identities=19% Similarity=0.255 Sum_probs=110.8
Q ss_pred CCcccEEEEEecCHHHHHHHHHhc-CCcccCCcEEEEeeccCC--------------CCCCCCCCccEEEeCCCcccCHH
Q 007673 68 RRSLGYGYVNYANPADAARALDVL-NFTPLNNKSIRIMYSHRD--------------PSIRKSGTGNIFIKNLDKSIDHK 132 (593)
Q Consensus 68 ~~s~g~AfV~F~s~e~A~~Al~~l-n~~~i~g~~i~v~~s~~~--------------~~~~~~~~~~lfV~nLp~~~t~~ 132 (593)
.+.+|+++|+|.+.++|++|++.+ |+..+.| .+++.++... ........++|||+|||.+++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 9999999 9999887641 12334467789999999999999
Q ss_pred HHHhhhccccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEEeccccch
Q 007673 133 ALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVFVGHFLRK 196 (593)
Q Consensus 133 ~L~~~f~~~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~v~~~~~~ 196 (593)
+|+++|+.||.|.+|++..+ ++|||||+|.+.++|..|++.+||..+.|+.|.|.++.++
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999876 6899999999999999999999999999999999887654
No 60
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=141.95 Aligned_cols=89 Identities=17% Similarity=0.334 Sum_probs=83.1
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.......++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 007673 103 IMYSHRDPS 111 (593)
Q Consensus 103 v~~s~~~~~ 111 (593)
|.|+.....
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999976543
No 61
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=1e-17 Score=143.23 Aligned_cols=90 Identities=28% Similarity=0.489 Sum_probs=83.7
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.......++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 007673 103 IMYSHRDPSI 112 (593)
Q Consensus 103 v~~s~~~~~~ 112 (593)
|.|+...+..
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.5e-18 Score=138.70 Aligned_cols=85 Identities=31% Similarity=0.526 Sum_probs=80.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..+++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|+|+.|+|.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 007673 107 HRDPS 111 (593)
Q Consensus 107 ~~~~~ 111 (593)
.....
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76543
No 63
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.5e-18 Score=137.53 Aligned_cols=83 Identities=28% Similarity=0.439 Sum_probs=78.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
...+.++|||+|||+++++++|+++|+.||.|.+|++.+|..+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecc
Q 007673 105 YSH 107 (593)
Q Consensus 105 ~s~ 107 (593)
|+.
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 873
No 64
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-18 Score=139.56 Aligned_cols=87 Identities=18% Similarity=0.331 Sum_probs=82.1
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45689999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 007673 106 SHRDPSI 112 (593)
Q Consensus 106 s~~~~~~ 112 (593)
+......
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876544
No 65
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.6e-18 Score=139.49 Aligned_cols=89 Identities=18% Similarity=0.432 Sum_probs=82.1
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
+......++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++ +|+..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3345678999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EeeccCCCCC
Q 007673 103 IMYSHRDPSI 112 (593)
Q Consensus 103 v~~s~~~~~~ 112 (593)
|.|+......
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999865443
No 66
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.7e-18 Score=142.57 Aligned_cols=90 Identities=28% Similarity=0.417 Sum_probs=83.5
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
++....+.++|||+|||+++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 5 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 5 SSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred cCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 007673 102 RIMYSHRDPS 111 (593)
Q Consensus 102 ~v~~s~~~~~ 111 (593)
+|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2cqb_A 85 RVNLAKPMRI 94 (102)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999876543
No 67
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=3.6e-18 Score=146.75 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=80.0
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
........++|||+|||+++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 33445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecc
Q 007673 102 RIMYSH 107 (593)
Q Consensus 102 ~v~~s~ 107 (593)
+|.|++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999863
No 68
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=138.15 Aligned_cols=86 Identities=21% Similarity=0.423 Sum_probs=80.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||+++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345568999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.|+...+
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987643
No 69
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=7.4e-18 Score=141.78 Aligned_cols=91 Identities=19% Similarity=0.344 Sum_probs=83.4
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc---C
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL---N 97 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i---~ 97 (593)
+........++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|++.||+..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 3444566789999999999999999999999999999999999999999999999999999999999999999887 8
Q ss_pred CcEEEEeeccCCCC
Q 007673 98 NKSIRIMYSHRDPS 111 (593)
Q Consensus 98 g~~i~v~~s~~~~~ 111 (593)
|++|+|.|+.....
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 99999999876543
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.1e-17 Score=142.96 Aligned_cols=88 Identities=24% Similarity=0.374 Sum_probs=82.1
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 007673 104 MYSHRDPS 111 (593)
Q Consensus 104 ~~s~~~~~ 111 (593)
.|+.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99876543
No 71
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7e-18 Score=141.14 Aligned_cols=86 Identities=20% Similarity=0.342 Sum_probs=81.4
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 007673 105 YSHRDP 110 (593)
Q Consensus 105 ~s~~~~ 110 (593)
|+....
T Consensus 89 ~a~~~~ 94 (103)
T 2dnm_A 89 VARYGR 94 (103)
T ss_dssp ECSSCC
T ss_pred ECCcCC
Confidence 998654
No 72
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-18 Score=140.79 Aligned_cols=87 Identities=28% Similarity=0.505 Sum_probs=81.7
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeE-EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE-
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVL-SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS- 100 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~-~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~- 100 (593)
+....++++|||+|||+++++++|+++|+.||.|. +|++++|+.+++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 82 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATP 82 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSS
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCc
Confidence 44556789999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred ---EEEeeccCC
Q 007673 101 ---IRIMYSHRD 109 (593)
Q Consensus 101 ---i~v~~s~~~ 109 (593)
|+|.|+...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 999998754
No 73
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=138.90 Aligned_cols=89 Identities=25% Similarity=0.405 Sum_probs=81.7
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
....+..+.++|||+|||+++++++|+++|+.|| |.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3445566789999999999999999999999997 999999999999999999999999999999999 79999999999
Q ss_pred EEEeeccCCCC
Q 007673 101 IRIMYSHRDPS 111 (593)
Q Consensus 101 i~v~~s~~~~~ 111 (593)
|+|.|+.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dng_A 85 LRVDIAEGRKQ 95 (103)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEecCCCC
Confidence 99999876544
No 74
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=139.46 Aligned_cols=85 Identities=25% Similarity=0.510 Sum_probs=77.9
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
........++|||+|||+++++++|+++|+.||.|.+|++++++. ++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 344556789999999999999999999999999999999999986 8999999999999999999999999999999999
Q ss_pred EEeecc
Q 007673 102 RIMYSH 107 (593)
Q Consensus 102 ~v~~s~ 107 (593)
+|.|+.
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999875
No 75
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=8.7e-18 Score=134.57 Aligned_cols=81 Identities=36% Similarity=0.575 Sum_probs=77.8
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHR 108 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~ 108 (593)
+.+|||+|||.++++++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|++|++.||+..+.|+.|+|.|+..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 007673 109 D 109 (593)
Q Consensus 109 ~ 109 (593)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 76
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=139.13 Aligned_cols=89 Identities=27% Similarity=0.502 Sum_probs=82.1
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
.......+.++|||+|||+++|+++|+++|+.||.|.+|+++++ +++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34455668899999999999999999999999999999999998 8899999999999999999999999999999999
Q ss_pred EEEeeccCCCC
Q 007673 101 IRIMYSHRDPS 111 (593)
Q Consensus 101 i~v~~s~~~~~ 111 (593)
|+|.|+.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 99999987544
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.7e-17 Score=140.89 Aligned_cols=88 Identities=16% Similarity=0.309 Sum_probs=82.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC------CcccC
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN------FTPLN 97 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln------~~~i~ 97 (593)
....+.++|||+|||+++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|++.+| +..|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 445678999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CcEEEEeeccCCCC
Q 007673 98 NKSIRIMYSHRDPS 111 (593)
Q Consensus 98 g~~i~v~~s~~~~~ 111 (593)
|+.|+|.|+.....
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999876543
No 78
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-17 Score=138.28 Aligned_cols=90 Identities=27% Similarity=0.424 Sum_probs=80.7
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
.........++|||+|||+++++++|+++|+.||.|.+|++++|..+ ++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 34445667899999999999999999999999999999999998554 6899999999999999999999999999999
Q ss_pred EEEeeccCCCCC
Q 007673 101 IRIMYSHRDPSI 112 (593)
Q Consensus 101 i~v~~s~~~~~~ 112 (593)
|+|.|+......
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2cqi_A 85 VKVNWATTPSSQ 96 (103)
T ss_dssp EEEEECCCTTCC
T ss_pred EEEEECCCCccc
Confidence 999999875443
No 79
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=138.45 Aligned_cols=85 Identities=21% Similarity=0.366 Sum_probs=79.9
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEE--------EEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS--------VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~--------i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~ 94 (593)
..++.+.++|||+|||.++|+++|+++|+.||.|.+ |++.+|+.+++++|||||+|.+.++|.+|++.||+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccCCcEEEEeecc
Q 007673 95 PLNNKSIRIMYSH 107 (593)
Q Consensus 95 ~i~g~~i~v~~s~ 107 (593)
.+.|+.|+|.|++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999863
No 80
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=139.91 Aligned_cols=90 Identities=21% Similarity=0.464 Sum_probs=83.1
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEee-CCCCCcccEEEEEecCHHHHHHHHHhc-CCcccCCcE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD-LSTRRSLGYGYVNYANPADAARALDVL-NFTPLNNKS 100 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d-~~t~~s~g~AfV~F~s~e~A~~Al~~l-n~~~i~g~~ 100 (593)
.......++|||+|||+++|+++|+++|+.||.|.+|+++++ +.+++++|||||+|.+.++|.+|++.| |+..|.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344567899999999999999999999999999999999999 789999999999999999999999999 999999999
Q ss_pred EEEeeccCCCCC
Q 007673 101 IRIMYSHRDPSI 112 (593)
Q Consensus 101 i~v~~s~~~~~~ 112 (593)
|+|.|+......
T Consensus 89 l~v~~a~~~~~~ 100 (107)
T 2cph_A 89 LVLEWADSEVTV 100 (107)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 81
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=4.3e-18 Score=145.51 Aligned_cols=105 Identities=23% Similarity=0.443 Sum_probs=94.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
+..+++|||+|||+++|+++|+++|+.||.|.+|++.++ +.++|||||+|.+.++|.+|++.||+..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999976 45689999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccc
Q 007673 106 SHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGN 143 (593)
Q Consensus 106 s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~ 143 (593)
+...... ++++...++++|.++|+.||-
T Consensus 82 a~~~~~~----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh----------hhhhHhHhHHHHHHHHHHhCC
Confidence 8754322 677888999999999999983
No 82
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=140.54 Aligned_cols=89 Identities=25% Similarity=0.404 Sum_probs=82.3
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
........++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++. ++..|.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 344566789999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred EEeeccCCCC
Q 007673 102 RIMYSHRDPS 111 (593)
Q Consensus 102 ~v~~s~~~~~ 111 (593)
+|.|+.....
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 9999876543
No 83
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=3.2e-17 Score=137.58 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=80.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC---cEE
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN---KSI 101 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g---~~i 101 (593)
.....++|||+|||+++++++|+++|+.||.|.+|++++++ +++++|||||+|.+.++|++|++.||+..+.| ++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34568999999999999999999999999999999999998 78999999999999999999999999999998 999
Q ss_pred EEeeccCCCC
Q 007673 102 RIMYSHRDPS 111 (593)
Q Consensus 102 ~v~~s~~~~~ 111 (593)
+|.|+...+.
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987654
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=141.61 Aligned_cols=88 Identities=27% Similarity=0.389 Sum_probs=81.3
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
........++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.+++ .|.|+.|
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 334456789999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred EEeeccCCC
Q 007673 102 RIMYSHRDP 110 (593)
Q Consensus 102 ~v~~s~~~~ 110 (593)
+|.|+....
T Consensus 89 ~V~~a~~~~ 97 (116)
T 2cqd_A 89 NVNLAYLGA 97 (116)
T ss_dssp EEEESTTTC
T ss_pred EEEEcccCC
Confidence 999997643
No 85
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=8.9e-18 Score=146.21 Aligned_cols=88 Identities=28% Similarity=0.394 Sum_probs=82.6
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
....+.+.++|||+|||+++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|++.||+..|+|+.|
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 44456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCC
Q 007673 102 RIMYSHRD 109 (593)
Q Consensus 102 ~v~~s~~~ 109 (593)
+|.|+...
T Consensus 119 ~V~~a~~~ 126 (129)
T 2kxn_B 119 RVDFSITK 126 (129)
T ss_dssp EESCCSSS
T ss_pred EEEEecCC
Confidence 99998764
No 86
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=138.74 Aligned_cols=85 Identities=29% Similarity=0.560 Sum_probs=80.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEE-EEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSV-RVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i-~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
.++++|||+|||+++|+++|+++|+.||.|.+| ++++|+.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007673 106 SHRDPS 111 (593)
Q Consensus 106 s~~~~~ 111 (593)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 876543
No 87
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1e-17 Score=138.13 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=79.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
++++|||+|||.++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.|+.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 007673 108 RDP 110 (593)
Q Consensus 108 ~~~ 110 (593)
..+
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 653
No 88
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=139.64 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=80.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
....+++|||+|||+++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 007673 105 YSHRD 109 (593)
Q Consensus 105 ~s~~~ 109 (593)
|+...
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98754
No 89
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=139.34 Aligned_cols=85 Identities=29% Similarity=0.512 Sum_probs=80.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||.++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.+|+..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 007673 105 YSHRD 109 (593)
Q Consensus 105 ~s~~~ 109 (593)
|+...
T Consensus 102 ~a~~k 106 (108)
T 2jrs_A 102 HVTER 106 (108)
T ss_dssp CSCSS
T ss_pred EcccC
Confidence 98754
No 90
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.73 E-value=3.8e-18 Score=138.91 Aligned_cols=81 Identities=21% Similarity=0.405 Sum_probs=73.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccC--CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVG--QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G--~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
.+|||+|||+++|+++|+++|+.|| .|.+|++.+|+.+++++|||||+|.+.++|++|++.||+..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 007673 108 RDP 110 (593)
Q Consensus 108 ~~~ 110 (593)
..+
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 91
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=147.02 Aligned_cols=93 Identities=29% Similarity=0.492 Sum_probs=84.0
Q ss_pred CCCCCCCCCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCC
Q 007673 14 GPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93 (593)
Q Consensus 14 ~~~~~~~~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~ 93 (593)
++.+++...+......++|||+|||.++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+
T Consensus 48 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 48 GGSGGSGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp CCSCSSCSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CCCCCCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 33444445556677899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcEEEEeec
Q 007673 94 TPLNNKSIRIMYS 106 (593)
Q Consensus 94 ~~i~g~~i~v~~s 106 (593)
..|.|+.|+|.|+
T Consensus 128 ~~~~g~~l~v~~A 140 (140)
T 2ku7_A 128 SELFGRTIRVNLA 140 (140)
T ss_dssp EEETTEEEEEEC-
T ss_pred CEECCEEEEEEeC
Confidence 9999999999875
No 92
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=137.48 Aligned_cols=85 Identities=26% Similarity=0.520 Sum_probs=79.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCC---CCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLS---TRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~---t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
.+.++|||+|||+++|+++|+++|+.||.|.+|++.++.. |++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999987 6789999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 007673 104 MYSHRDPS 111 (593)
Q Consensus 104 ~~s~~~~~ 111 (593)
.|+.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976543
No 93
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-17 Score=136.16 Aligned_cols=89 Identities=28% Similarity=0.453 Sum_probs=80.4
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
.........++|||+|||+++|+++|+++|+.||.|.+|+++++.. .++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3445566789999999999999999999999999999999999865 38899999999999999999999999999999
Q ss_pred EEEeeccCCCC
Q 007673 101 IRIMYSHRDPS 111 (593)
Q Consensus 101 i~v~~s~~~~~ 111 (593)
|+|.|+...+.
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cq3_A 85 IEVNNATARVM 95 (103)
T ss_dssp CEEEECCSSCC
T ss_pred EEEEEcccCCC
Confidence 99999876543
No 94
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.72 E-value=5e-17 Score=143.88 Aligned_cols=88 Identities=27% Similarity=0.401 Sum_probs=82.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||.++||++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 007673 104 MYSHRDPS 111 (593)
Q Consensus 104 ~~s~~~~~ 111 (593)
.|+.....
T Consensus 117 ~~a~~~~~ 124 (139)
T 1u6f_A 117 ALAASGHQ 124 (139)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99876543
No 95
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=137.77 Aligned_cols=89 Identities=25% Similarity=0.435 Sum_probs=81.2
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCC-CCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-RRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t-~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
+..+..+.++|||+|||+++|+++|+++|+.|| |.+|++++++.+ ++++|||||+|.+.++|++|+ .||+..|.|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 334456679999999999999999999999999 999999999988 899999999999999999999 89999999999
Q ss_pred EEEeeccCCCCC
Q 007673 101 IRIMYSHRDPSI 112 (593)
Q Consensus 101 i~v~~s~~~~~~ 112 (593)
|+|.|+......
T Consensus 86 l~V~~a~~~~~~ 97 (104)
T 1wi8_A 86 IRVDVADQAQDK 97 (104)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999998766443
No 96
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2e-17 Score=130.11 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
+..+..||||||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~ 77 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAES 77 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEE
Confidence 34578999999999999999999999999999999854 679999999999999999999999999999999987
Q ss_pred c
Q 007673 106 S 106 (593)
Q Consensus 106 s 106 (593)
+
T Consensus 78 A 78 (89)
T 2wbr_A 78 P 78 (89)
T ss_dssp C
T ss_pred C
Confidence 6
No 97
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=149.04 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=77.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccC--CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVG--QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G--~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
..++|||+|||+++||++|+++|+.|| .|.+|++++|+.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 007673 106 SHR 108 (593)
Q Consensus 106 s~~ 108 (593)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 98
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.72 E-value=8.8e-18 Score=139.56 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=78.3
Q ss_pred CCccEEEEeCCCC------CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC-c
Q 007673 27 FLTTSLYVGDLDF------NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-K 99 (593)
Q Consensus 27 ~~~~sL~V~nLp~------~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g-~ 99 (593)
..+++|||+|||. ++++++|+++|++||.|.+|++++|+.|++++|||||+|.+.++|.+|++.||+..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEeeccC
Q 007673 100 SIRIMYSHR 108 (593)
Q Consensus 100 ~i~v~~s~~ 108 (593)
.|+|.|+..
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999998754
No 99
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=137.51 Aligned_cols=85 Identities=15% Similarity=0.214 Sum_probs=79.7
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++++++|+++|+.||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCC
Q 007673 105 YSHRD 109 (593)
Q Consensus 105 ~s~~~ 109 (593)
|+...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98653
No 100
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=3.2e-17 Score=132.50 Aligned_cols=81 Identities=25% Similarity=0.468 Sum_probs=75.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|++ +++..++|+.|+|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999997 57788999999998
Q ss_pred ec
Q 007673 105 YS 106 (593)
Q Consensus 105 ~s 106 (593)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 101
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=8.8e-18 Score=147.04 Aligned_cols=85 Identities=18% Similarity=0.348 Sum_probs=79.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEE--EEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc----ccC
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS--VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT----PLN 97 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~--i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~----~i~ 97 (593)
......++|||+|||+++||++|+++|+.||.|.+ |+|++|+.+++++|||||+|.+. +|.+|++.||+. .|.
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 33466789999999999999999999999999977 99999999999999999999999 999999999999 999
Q ss_pred CcEEEEeeccCC
Q 007673 98 NKSIRIMYSHRD 109 (593)
Q Consensus 98 g~~i~v~~s~~~ 109 (593)
|+.|+|.|+...
T Consensus 97 gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 GKTINVEFAKGS 108 (131)
T ss_dssp GCCCCCEECCCS
T ss_pred CEEEEEEECCCC
Confidence 999999998654
No 102
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7e-17 Score=137.71 Aligned_cols=87 Identities=24% Similarity=0.408 Sum_probs=80.1
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
......+.++|||+|||+++++++|+++|+.||.|.+|++++++ +++++|||||+|.+.++|++|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 33445678999999999999999999999999999999999997 58999999999999999999999999999999999
Q ss_pred EEeeccCC
Q 007673 102 RIMYSHRD 109 (593)
Q Consensus 102 ~v~~s~~~ 109 (593)
+|.|+...
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99998643
No 103
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.8e-17 Score=134.39 Aligned_cols=88 Identities=24% Similarity=0.354 Sum_probs=79.9
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.......++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++. +..|.|+.|+
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999994 5789999999
Q ss_pred EeeccCCCCC
Q 007673 103 IMYSHRDPSI 112 (593)
Q Consensus 103 v~~s~~~~~~ 112 (593)
|.|+......
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999876443
No 104
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=4.4e-17 Score=139.16 Aligned_cols=84 Identities=25% Similarity=0.458 Sum_probs=79.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||.++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 007673 106 SHRDP 110 (593)
Q Consensus 106 s~~~~ 110 (593)
+....
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 87544
No 105
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.71 E-value=3.2e-17 Score=131.24 Aligned_cols=79 Identities=34% Similarity=0.650 Sum_probs=75.6
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
++|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|++|.|.+++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999988 57889999999999999999999999999999999999999875
No 106
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=139.17 Aligned_cols=88 Identities=23% Similarity=0.388 Sum_probs=82.0
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeE--------EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcc
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVL--------SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP 95 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~--------~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~ 95 (593)
......++|||+|||+++|+++|+++|+.||.|. .|++++|+.+++++|||||+|.+.++|++|++.||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999999 69999999999999999999999999999999999999
Q ss_pred cCCcEEEEeeccCCCC
Q 007673 96 LNNKSIRIMYSHRDPS 111 (593)
Q Consensus 96 i~g~~i~v~~s~~~~~ 111 (593)
|.|+.|+|.|+.....
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999887644
No 107
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=136.62 Aligned_cols=86 Identities=30% Similarity=0.424 Sum_probs=80.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcc-cCCcEEE
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQ-VGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP-LNNKSIR 102 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~-~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~-i~g~~i~ 102 (593)
...+.++|||+|||+++|+++|+++|+. ||.|.+|++++|. +++++|||||+|.+.++|.+|++.||+.. |.|+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3456789999999999999999999999 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EeeccCCCC
Q 007673 103 IMYSHRDPS 111 (593)
Q Consensus 103 v~~s~~~~~ 111 (593)
|.|+.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999876543
No 108
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=1e-17 Score=137.91 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=76.3
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
..+..++|||+|||+++|+++|+++|+.||.|.+++++++..+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecc
Q 007673 105 YSH 107 (593)
Q Consensus 105 ~s~ 107 (593)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 864
No 109
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=3.3e-17 Score=138.77 Aligned_cols=86 Identities=19% Similarity=0.286 Sum_probs=80.9
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||.++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 007673 105 YSHRDP 110 (593)
Q Consensus 105 ~s~~~~ 110 (593)
|+...+
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987643
No 110
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=7e-18 Score=137.46 Aligned_cols=79 Identities=20% Similarity=0.363 Sum_probs=72.9
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCC-CeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhC-CceecCeeeEEEecc
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN-GKMIVSKPLYVAVAQ 388 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G-~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~-~~~~~~~~l~v~~~~ 388 (593)
++|||+|||.++|+++|+++|++|| .|.+|+|+++. +|.++|||||+|.+.++|.+|++.++ +..++|++|.|+|+.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5799999999999999999999999 89999999884 68999999999999999999999874 567999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 111
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=136.13 Aligned_cols=83 Identities=13% Similarity=0.211 Sum_probs=74.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCC--cccCCcEEE
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF--TPLNNKSIR 102 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~--~~i~g~~i~ 102 (593)
.+.+.++|||+|||+++||++|+++|++||.|.+|+|+++ +|||||+|.+.++|++|++.+++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3557899999999999999999999999999999999875 58999999999999999998864 689999999
Q ss_pred EeeccCCCCCC
Q 007673 103 IMYSHRDPSIR 113 (593)
Q Consensus 103 v~~s~~~~~~~ 113 (593)
|.|+.......
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99998664433
No 112
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=131.66 Aligned_cols=81 Identities=28% Similarity=0.550 Sum_probs=75.2
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 5678999999999999999999999999999999998 478899999999999999999999999999999999999998
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 65
No 113
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=135.19 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=77.4
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
...+...++|||+|||+++||++|+++|+.||.| +|++++|+ +++++|||||+|.+.++|++||+ +|+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 4455677999999999999999999999999955 99999998 89999999999999999999996 799999999999
Q ss_pred EeeccCCC
Q 007673 103 IMYSHRDP 110 (593)
Q Consensus 103 v~~s~~~~ 110 (593)
|.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99887654
No 114
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.1e-17 Score=136.66 Aligned_cols=80 Identities=16% Similarity=0.289 Sum_probs=75.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
...++|||+|||+++|+++|+++|+.||.|.+|++++|.. ++++|||||+|.+.++|.+|++ +++..|.|+.|+|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4578999999999999999999999999999999999987 9999999999999999999999 8999999999999987
Q ss_pred cC
Q 007673 107 HR 108 (593)
Q Consensus 107 ~~ 108 (593)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.7e-18 Score=134.95 Aligned_cols=82 Identities=23% Similarity=0.418 Sum_probs=77.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
+.++++|||+|||+++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|++.||+..+.|+.+++.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred cc
Q 007673 106 SH 107 (593)
Q Consensus 106 s~ 107 (593)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 116
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4.1e-17 Score=128.29 Aligned_cols=77 Identities=23% Similarity=0.386 Sum_probs=71.5
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
.+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..++|+.|+|.+|..
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 356799999999999999999999999999999866 599999999999999999999999999999999999964
Q ss_pred hH
Q 007673 390 KE 391 (593)
Q Consensus 390 ~~ 391 (593)
.+
T Consensus 81 ~~ 82 (89)
T 2wbr_A 81 NE 82 (89)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 117
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.1e-17 Score=137.74 Aligned_cols=93 Identities=25% Similarity=0.417 Sum_probs=82.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
++|||+|||+++|+++|+++|+.||.|.+|++.++ ++|||||+|.+.++|++|++.||+..+.|+.|+|.|+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 6799999999999999999999999999999999998765
Q ss_pred CCC--------CCCCCccEEEeCCCc
Q 007673 110 PSI--------RKSGTGNIFIKNLDK 127 (593)
Q Consensus 110 ~~~--------~~~~~~~lfV~nLp~ 127 (593)
+.. +.....+|||+||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 422 122356799999863
No 118
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=136.16 Aligned_cols=80 Identities=18% Similarity=0.305 Sum_probs=73.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCC--eeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCc----eecCeee
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGT--ITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK----MIVSKPL 382 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~--i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~----~~~~~~l 382 (593)
...+|||+|||.++|+++|+++|++||. |.+|++++|. +|+++|||||+|.+.++|.+|++.|||. .|+||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4468999999999999999999999995 6789999885 6899999999999999999999999996 5899999
Q ss_pred EEEeccc
Q 007673 383 YVAVAQR 389 (593)
Q Consensus 383 ~v~~~~~ 389 (593)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999974
No 119
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=134.85 Aligned_cols=88 Identities=16% Similarity=0.292 Sum_probs=78.6
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
.........++|||+|||+++|+++|+++|+.||.|.+|++..+ ++++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34445567899999999999999999999999999999999654 468899999999999999999999999999999
Q ss_pred EEEeeccCCCC
Q 007673 101 IRIMYSHRDPS 111 (593)
Q Consensus 101 i~v~~s~~~~~ 111 (593)
|+|.|+.....
T Consensus 91 l~V~~a~~~~~ 101 (109)
T 1x4a_A 91 LRVEFPRSGRG 101 (109)
T ss_dssp CEEECCCCCCC
T ss_pred EEEEEcccCCC
Confidence 99999876543
No 120
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.70 E-value=4.9e-17 Score=132.01 Aligned_cols=80 Identities=21% Similarity=0.438 Sum_probs=76.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..++|||+|||.++|+++|+++|+.||.|.+|++.++..+++++|||||+|.+.++|.+|+ .+|+..+.|+.|+|.|+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3689999999999999999999999999999999999999999999999999999999999 899999999999999986
Q ss_pred C
Q 007673 108 R 108 (593)
Q Consensus 108 ~ 108 (593)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 121
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-17 Score=134.66 Aligned_cols=85 Identities=21% Similarity=0.275 Sum_probs=77.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEE-EEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS-VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~-i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
......++|||+|||+++||++|+++|+.||.|.+ |++++| .+++++|||||+|.+.++|++|++. |+..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34456799999999999999999999999999987 999998 7899999999999999999999997 99999999999
Q ss_pred EeeccCCC
Q 007673 103 IMYSHRDP 110 (593)
Q Consensus 103 v~~s~~~~ 110 (593)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99887653
No 122
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=7.6e-17 Score=131.76 Aligned_cols=83 Identities=25% Similarity=0.386 Sum_probs=77.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||.++++++|+++|+.||.|.+|++.++ +++++|||||+|.+.++|++|++.||+..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999985 788999999999999999999999999999999999999
Q ss_pred ccCCC
Q 007673 106 SHRDP 110 (593)
Q Consensus 106 s~~~~ 110 (593)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87653
No 123
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=7.1e-17 Score=135.98 Aligned_cols=83 Identities=30% Similarity=0.463 Sum_probs=78.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||+++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345668999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eecc
Q 007673 104 MYSH 107 (593)
Q Consensus 104 ~~s~ 107 (593)
.|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 124
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=137.81 Aligned_cols=83 Identities=30% Similarity=0.549 Sum_probs=79.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
...++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 007673 107 HRD 109 (593)
Q Consensus 107 ~~~ 109 (593)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 764
No 125
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=3.8e-17 Score=149.04 Aligned_cols=140 Identities=20% Similarity=0.339 Sum_probs=79.2
Q ss_pred EEeCCHHHHHHHHHHHCCCccC--CceEEEeccccchHHHHHHhhh---HHh-hhhhhhcccccceeeeccCCCCCCHHH
Q 007673 254 VNFENADDAAKAVEALNGKKFD--DREWYVGKAQKKSEREQELKGQ---FEQ-AMKETVDKFQGLNLYIKNLGDSIDDEK 327 (593)
Q Consensus 254 V~F~~~e~A~~Ai~~l~g~~~~--~~~l~v~~a~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~l~V~nl~~~~~~~~ 327 (593)
..|++.++|..++..+++.... |+.....+... .+...+... ... ..........+++|||+|||..+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~--~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTR--EAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccc--ccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 6789999999999888876654 44444333211 111111100 000 111122334577899999999999999
Q ss_pred HHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchHHHHH
Q 007673 328 LKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKEERRA 395 (593)
Q Consensus 328 l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~~r~~ 395 (593)
|+++|+.||.|.+|.|+.+ .+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+..+..++.
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~ 157 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKRV 157 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC----
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCCC
Confidence 9999999999999999988 5788999999999999999999999999999999999999987765543
No 126
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.4e-17 Score=132.93 Aligned_cols=83 Identities=20% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHH----HHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCc
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLY----DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~----~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~ 99 (593)
.+....++|||+|||+++++++|+ ++|++||.|.+|++.+|+.+ +|||||+|.+.++|.+|++.||+..|.|+
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 344567899999999999999999 99999999999999998776 68999999999999999999999999999
Q ss_pred EEEEeeccCC
Q 007673 100 SIRIMYSHRD 109 (593)
Q Consensus 100 ~i~v~~s~~~ 109 (593)
.|+|.|+...
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 9999998654
No 127
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.4e-17 Score=134.44 Aligned_cols=82 Identities=26% Similarity=0.453 Sum_probs=78.3
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45678999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
++
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 128
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=4.1e-17 Score=133.38 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=72.9
Q ss_pred cccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--ecCeeeEE
Q 007673 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM--IVSKPLYV 384 (593)
Q Consensus 307 ~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~--~~~~~l~v 384 (593)
...++++|||+|||+++|+++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.+++.. +.|++|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 4457789999999999999999999999999999999863 7899999999999999999999875 78999999
Q ss_pred EeccchH
Q 007673 385 AVAQRKE 391 (593)
Q Consensus 385 ~~~~~~~ 391 (593)
+|++.++
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998753
No 129
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.2e-17 Score=135.25 Aligned_cols=83 Identities=20% Similarity=0.294 Sum_probs=77.5
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
..++|||+|||.++|+++|+++|++||.|.+|+|+.+..|.++|||||+|.+.++|.+|+. ++|..++|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 4578999999999999999999999999999999999889999999999999999999999 999999999999999876
Q ss_pred hHHH
Q 007673 390 KEER 393 (593)
Q Consensus 390 ~~~r 393 (593)
...+
T Consensus 89 ~~~~ 92 (103)
T 1s79_A 89 YFAK 92 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 130
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=2.6e-17 Score=157.98 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=79.0
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCC--CeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G--~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
..++|||+||++++|+++|+++|+.|| .|.+|+|+.+ .+|+++|||||+|.+.++|.+||+.|||..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 9999999998 4899999999999999999999999999999999999999
Q ss_pred ccchHHHHH
Q 007673 387 AQRKEERRA 395 (593)
Q Consensus 387 ~~~~~~r~~ 395 (593)
++.+.....
T Consensus 147 a~~~~~~~~ 155 (229)
T 3q2s_C 147 VNKQFLSQF 155 (229)
T ss_dssp CCHHHHHHH
T ss_pred CCCCccchh
Confidence 998765543
No 131
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.69 E-value=2.6e-17 Score=136.72 Aligned_cols=83 Identities=19% Similarity=0.301 Sum_probs=77.6
Q ss_pred ccceeeeccCCC------CCCHHHHHHHhhcCCCeeEEEEeeCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceecC-ee
Q 007673 310 QGLNLYIKNLGD------SIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVS-KP 381 (593)
Q Consensus 310 ~~~~l~V~nl~~------~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~-~~ 381 (593)
.+++|||+|||. ++++++|+++|++||.|.+|+|+.+.. |+++|||||+|.+.++|.+|++.|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457899999999 999999999999999999999998865 9999999999999999999999999999999 99
Q ss_pred eEEEeccchHH
Q 007673 382 LYVAVAQRKEE 392 (593)
Q Consensus 382 l~v~~~~~~~~ 392 (593)
|.|.++.+++.
T Consensus 85 l~V~~a~~~~~ 95 (100)
T 3ns6_A 85 LFLYTMKDVER 95 (100)
T ss_dssp CEEEESHHHHH
T ss_pred EEEEECchhhh
Confidence 99999987643
No 132
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=130.36 Aligned_cols=84 Identities=18% Similarity=0.412 Sum_probs=78.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||+++|+++|+++|+.| .|.+|+++++ .+++++|||||+|.+.++|.+|++ +|+..|.|+.|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 344567999999999999999999999999 9999999999 789999999999999999999999 9999999999999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.++...+
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987653
No 133
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=6.2e-17 Score=130.19 Aligned_cols=80 Identities=29% Similarity=0.484 Sum_probs=75.5
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|++||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|++|.|+|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35679999999999999999999999999999999887 67889999999999999999999999999999999999998
Q ss_pred c
Q 007673 388 Q 388 (593)
Q Consensus 388 ~ 388 (593)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 134
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.69 E-value=7.5e-17 Score=131.85 Aligned_cols=80 Identities=14% Similarity=0.154 Sum_probs=72.1
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcc--cCCcEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTP--LNNKSI 101 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~--i~g~~i 101 (593)
....++++|||+|||.++||++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|++.+++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3456789999999999999999999999999999999975 45899999999999999999999775 789999
Q ss_pred EEeeccCC
Q 007673 102 RIMYSHRD 109 (593)
Q Consensus 102 ~v~~s~~~ 109 (593)
+|.|++..
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99998754
No 135
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=6.1e-17 Score=138.75 Aligned_cols=85 Identities=16% Similarity=0.190 Sum_probs=78.2
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCC---eEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ---VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN 98 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~---V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g 98 (593)
........++|||+|||+++||++|+++|+.||. |.+|++++|+. ++++|||||+|.+.++|++||+ +|+..|.|
T Consensus 10 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 10 LGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp SSSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred cCCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 3344566899999999999999999999999999 89999999987 8999999999999999999999 99999999
Q ss_pred cEEEEeeccC
Q 007673 99 KSIRIMYSHR 108 (593)
Q Consensus 99 ~~i~v~~s~~ 108 (593)
+.|+|.++..
T Consensus 88 r~i~V~~a~~ 97 (118)
T 2db1_A 88 RYIEVFKSHR 97 (118)
T ss_dssp EEEEEEEECH
T ss_pred eEEEEEECCH
Confidence 9999998754
No 136
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-17 Score=135.55 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=72.9
Q ss_pred cccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceecCeeeEE
Q 007673 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYV 384 (593)
Q Consensus 307 ~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~--~~~~~~~~l~v 384 (593)
.....++|||+|||+++|+++|+++|++||.|.+|+|+++ ||||||+|.+.++|.+|++.++ +..+.|++|+|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3456789999999999999999999999999999999876 7999999999999999999886 47899999999
Q ss_pred EeccchH
Q 007673 385 AVAQRKE 391 (593)
Q Consensus 385 ~~~~~~~ 391 (593)
.|++.+.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9998653
No 137
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=6.7e-17 Score=136.46 Aligned_cols=85 Identities=26% Similarity=0.422 Sum_probs=76.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|++.++ ..|+|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999765 89999999999
Q ss_pred eccCCC
Q 007673 105 YSHRDP 110 (593)
Q Consensus 105 ~s~~~~ 110 (593)
++....
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987653
No 138
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=5.9e-17 Score=131.21 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=76.7
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCC-cccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR-SLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~-s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..++|||+|||.++|+++|+++|+.||.|.+|++.++..++. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999988766 8999999999999999999999999999999999998
Q ss_pred cC
Q 007673 107 HR 108 (593)
Q Consensus 107 ~~ 108 (593)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 139
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=8.4e-17 Score=139.87 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=81.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||+++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.|+....
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9987554
No 140
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.2e-17 Score=138.42 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=77.6
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCe-EEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV-LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V-~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
......++|||+|||+++|+++|+++|+.||.| .+|++++|+ +++++|||||+|.+.++|++||+. |+..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 445668999999999999999999999999999 899999998 899999999999999999999996 99999999999
Q ss_pred EeeccC
Q 007673 103 IMYSHR 108 (593)
Q Consensus 103 v~~s~~ 108 (593)
|.|+..
T Consensus 88 v~~a~~ 93 (114)
T 2cpy_A 88 VHVVTL 93 (114)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 999864
No 141
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=137.77 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=80.9
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
.....+++|||+|||.++++++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 355678999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.|+....
T Consensus 109 ~~a~~~~ 115 (124)
T 2kt5_A 109 QLVASQI 115 (124)
T ss_dssp EEECCTT
T ss_pred EEeCCCC
Confidence 9987653
No 142
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=9e-17 Score=132.20 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=77.0
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||..+++++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++.|||..++|++|.|.|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred c
Q 007673 389 R 389 (593)
Q Consensus 389 ~ 389 (593)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 143
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=3.2e-17 Score=128.49 Aligned_cols=75 Identities=25% Similarity=0.471 Sum_probs=72.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
+|||+|||+++++++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|++|++ +|+..++|+.|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999998 9999999999999874
No 144
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.69 E-value=2.5e-17 Score=134.01 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=70.9
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCC--CeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G--~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
.+|||+|||.++++++|+++|+.|| .|.+++++.+. +|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999984 78999999999999999999999999999999999999887
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
++
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 145
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.69 E-value=1e-16 Score=132.18 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=77.6
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
.++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5689999999999999999999999999999999884 688999999999999999999999999999999999999987
Q ss_pred hHHH
Q 007673 390 KEER 393 (593)
Q Consensus 390 ~~~r 393 (593)
+...
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 146
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=133.20 Aligned_cols=82 Identities=30% Similarity=0.474 Sum_probs=77.8
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356799999999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 147
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.8e-17 Score=133.51 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=73.6
Q ss_pred CCCCCccEEEEeCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc--ccCCcE
Q 007673 24 GNQFLTTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT--PLNNKS 100 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~-~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~--~i~g~~ 100 (593)
....++++|||+|||+ ++||++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.||+. .|.|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3455789999999999 9999999999999999999999875 379999999999999999998865 499999
Q ss_pred EEEeeccCCCCC
Q 007673 101 IRIMYSHRDPSI 112 (593)
Q Consensus 101 i~v~~s~~~~~~ 112 (593)
|+|.|+......
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 1x4d_A 84 VRVHLSQKYKRI 95 (102)
T ss_dssp CEEEEECCCTTS
T ss_pred EEEEECCCCCCC
Confidence 999999865443
No 148
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-17 Score=136.95 Aligned_cols=84 Identities=24% Similarity=0.456 Sum_probs=74.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeC-CCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDL-STRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~-~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
......++|||+|||.++++++|+++|+.|| |.+|++.+++ .+++++|||||+|.+.++|.+|+ .+|+..|+|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3456689999999999999999999999999 9999999998 68999999999999999999999 7999999999999
Q ss_pred EeeccCC
Q 007673 103 IMYSHRD 109 (593)
Q Consensus 103 v~~s~~~ 109 (593)
|.|+...
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998654
No 149
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=133.71 Aligned_cols=81 Identities=31% Similarity=0.560 Sum_probs=77.5
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 007673 389 R 389 (593)
Q Consensus 389 ~ 389 (593)
.
T Consensus 93 ~ 93 (114)
T 2do0_A 93 R 93 (114)
T ss_dssp C
T ss_pred c
Confidence 5
No 150
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=131.82 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=72.7
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc--ccCCcEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT--PLNNKSI 101 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~--~i~g~~i 101 (593)
....++++|||+|||++++|++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|++. .|.|++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34567899999999999999999999999999999999764 589999999999999999988754 4999999
Q ss_pred EEeeccCCCC
Q 007673 102 RIMYSHRDPS 111 (593)
Q Consensus 102 ~v~~s~~~~~ 111 (593)
+|.|+.....
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999976543
No 151
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-17 Score=129.50 Aligned_cols=76 Identities=29% Similarity=0.521 Sum_probs=73.5
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
++|||+|||+++++++|+++|++||.|.+|++.+++.+++++|||||+|.+.++|++|++.++ ..++|+.|+|.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999999999999999999999999999999 9999999999886
No 152
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.1e-17 Score=137.99 Aligned_cols=87 Identities=17% Similarity=0.236 Sum_probs=81.0
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCe-eEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTI-TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i-~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||+++++++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 456789999999999999999999999999 899999999999999999999999999999997 999999999999999
Q ss_pred cchHHHHHH
Q 007673 388 QRKEERRAR 396 (593)
Q Consensus 388 ~~~~~r~~~ 396 (593)
..++.+...
T Consensus 92 ~~~~~~~~~ 100 (114)
T 2cpy_A 92 TLEDMREIE 100 (114)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 988766544
No 153
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=132.13 Aligned_cols=85 Identities=22% Similarity=0.384 Sum_probs=76.3
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.......++|||+|||+++|+++|+++|+.||.| +++++ .+++++|||||+|.+.++|++|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3345678999999999999999999999999977 66776 6789999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 007673 103 IMYSHRDPS 111 (593)
Q Consensus 103 v~~s~~~~~ 111 (593)
|.|+.....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999977643
No 154
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.5e-17 Score=136.57 Aligned_cols=85 Identities=28% Similarity=0.470 Sum_probs=77.8
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.......++|||+|||.++|+++|+++|+.||.|.+|++++|.. .++|||||+|.+.++|++|++.||+..|+|+.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455789999999999999999999999999999999999853 5889999999999999999999999999999999
Q ss_pred EeeccCC
Q 007673 103 IMYSHRD 109 (593)
Q Consensus 103 v~~s~~~ 109 (593)
|.|+...
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998653
No 155
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7e-17 Score=135.00 Aligned_cols=83 Identities=63% Similarity=1.026 Sum_probs=78.7
Q ss_pred cccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 307 ~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
.....++|||+|||.++++++|+++|+.||.|.+|+++.+ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3457789999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++.+
T Consensus 90 a~~~ 93 (103)
T 2d9p_A 90 AQRK 93 (103)
T ss_dssp CSSC
T ss_pred eccc
Confidence 9865
No 156
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=135.36 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=80.0
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHH---HHHhccCCeEEEEEEeeCCCC---CcccEEEEEecCHHHHHHHHHhcCCcccC
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLY---DLFSQVGQVLSVRVCRDLSTR---RSLGYGYVNYANPADAARALDVLNFTPLN 97 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~---~~F~~~G~V~~i~v~~d~~t~---~s~g~AfV~F~s~e~A~~Al~~ln~~~i~ 97 (593)
......++|||+|||+++++++|+ ++|++||.|.+|++.++..++ +++|||||+|.+.++|++|++.||+..|.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 445568899999999999999999 999999999999999998754 56699999999999999999999999999
Q ss_pred CcEEEEeeccCCCC
Q 007673 98 NKSIRIMYSHRDPS 111 (593)
Q Consensus 98 g~~i~v~~s~~~~~ 111 (593)
|+.|+|.|+...+.
T Consensus 90 gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 GRTLKASLGTTKYC 103 (111)
T ss_dssp TEEEEEESCCCCSC
T ss_pred CEEEEEEecccccc
Confidence 99999999987653
No 157
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=142.27 Aligned_cols=87 Identities=18% Similarity=0.295 Sum_probs=79.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCC--CeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFG--TITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G--~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
..++|||+|||+++++++|+++|+.|| .|.+|+|+.| .+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 9999999988 4799999999999999999999999999999999999999
Q ss_pred ccchHHHHHH
Q 007673 387 AQRKEERRAR 396 (593)
Q Consensus 387 ~~~~~~r~~~ 396 (593)
+.++..+...
T Consensus 134 a~~~~~~~~e 143 (156)
T 3n9u_C 134 ATRQNLSQFE 143 (156)
T ss_dssp CCHHHHHHHH
T ss_pred cCCCcchhhh
Confidence 9987655443
No 158
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.68 E-value=2.2e-17 Score=145.02 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=78.7
Q ss_pred eEEEEeCCHHHHHHHHHHHCCCccCCceEEEeccccchHHHHHHhhhHHhhhhhhhcccccceeeeccCCCCCCHHHHHH
Q 007673 251 FGFVNFENADDAAKAVEALNGKKFDDREWYVGKAQKKSEREQELKGQFEQAMKETVDKFQGLNLYIKNLGDSIDDEKLKE 330 (593)
Q Consensus 251 ~afV~F~~~e~A~~Ai~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~ 330 (593)
+.|+.|++...+..|+..+++....++.- ..+.. ........++|||+|||.++++++|++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~------------------~~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR------------------PPPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp ------------------------------CCSCC------------------SCSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcCC------------------CCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 56888888888899998888776555431 11111 111233567899999999999999999
Q ss_pred HhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 331 LFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 331 ~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
+|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|++|.|.|++.+
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999998874 7889999999999999999999999999999999999999764
No 159
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=131.03 Aligned_cols=81 Identities=35% Similarity=0.619 Sum_probs=76.5
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|++||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|++|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56799999999999999999999999999999999885 58899999999999999999999999999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 160
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.6e-16 Score=130.19 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=73.6
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC--CcccCCcE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN--FTPLNNKS 100 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln--~~~i~g~~ 100 (593)
.....++++|||+|||+++||++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.++ +..+.|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344567899999999999999999999999999999999875 5899999999999999999774 56799999
Q ss_pred EEEeeccCCCC
Q 007673 101 IRIMYSHRDPS 111 (593)
Q Consensus 101 i~v~~s~~~~~ 111 (593)
|+|.|+.....
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999986543
No 161
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.7e-16 Score=130.22 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=75.9
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|++|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 3466799999999999999999999999999999999885 488999999999999999999999999999999999999
Q ss_pred cc
Q 007673 387 AQ 388 (593)
Q Consensus 387 ~~ 388 (593)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 162
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=1.2e-16 Score=134.11 Aligned_cols=83 Identities=33% Similarity=0.575 Sum_probs=78.6
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC---eeeEEE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS---KPLYVA 385 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~---~~l~v~ 385 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..+.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 45789999999999999999999999999999999999899999999999999999999999999999988 999999
Q ss_pred eccchH
Q 007673 386 VAQRKE 391 (593)
Q Consensus 386 ~~~~~~ 391 (593)
|++.+.
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 998753
No 163
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=136.58 Aligned_cols=81 Identities=28% Similarity=0.532 Sum_probs=77.5
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 56789999999999999999999999999999999998999999999999999999999999999999999999999975
Q ss_pred h
Q 007673 390 K 390 (593)
Q Consensus 390 ~ 390 (593)
+
T Consensus 86 ~ 86 (116)
T 2fy1_A 86 P 86 (116)
T ss_dssp S
T ss_pred C
Confidence 4
No 164
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=9.5e-17 Score=140.33 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=77.9
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCC---eEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCc
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ---VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~---V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~ 99 (593)
+......++|||+|||+++||++|+++|+.||. |.+|++++|+. ++++|||||+|.+.++|++|++ +|+..|.|+
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 344567899999999999999999999999999 89999999987 9999999999999999999999 999999999
Q ss_pred EEEEeeccC
Q 007673 100 SIRIMYSHR 108 (593)
Q Consensus 100 ~i~v~~s~~ 108 (593)
.|+|.++..
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999988753
No 165
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.7e-17 Score=137.82 Aligned_cols=81 Identities=27% Similarity=0.346 Sum_probs=77.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
...++|||+|||.++++++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|++|+ .||+..|.|+.|+|.|+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 35689999999999999999999999999999999999999999999999999999999999 89999999999999998
Q ss_pred cC
Q 007673 107 HR 108 (593)
Q Consensus 107 ~~ 108 (593)
..
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 166
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.4e-17 Score=132.36 Aligned_cols=81 Identities=36% Similarity=0.637 Sum_probs=77.0
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEE-EEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v-~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
.+++|||+|||.++++++|+++|+.||.|.++ +|+.+ .+|.++|||||+|.+.++|.+|++.|||..++|++|.|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56799999999999999999999999999999 99988 67889999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
.++
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 765
No 167
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.67 E-value=1.3e-16 Score=136.27 Aligned_cols=83 Identities=36% Similarity=0.549 Sum_probs=78.0
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456799999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++++
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9765
No 168
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=134.18 Aligned_cols=86 Identities=19% Similarity=0.261 Sum_probs=79.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCC-eEEEEEE-eeCCCCCcccEEEEEecCHHHHHHHHHhcC--CcccCCcEE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVC-RDLSTRRSLGYGYVNYANPADAARALDVLN--FTPLNNKSI 101 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~-V~~i~v~-~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln--~~~i~g~~i 101 (593)
+.+.++|||+|||+++|+++|+++|+.||. |.+|++. ++..+++++|||||+|.+.++|.+|++.|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999999 888889999999999999999999999996 589999999
Q ss_pred EEeeccCCCC
Q 007673 102 RIMYSHRDPS 111 (593)
Q Consensus 102 ~v~~s~~~~~ 111 (593)
+|.|+.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986543
No 169
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=131.63 Aligned_cols=82 Identities=28% Similarity=0.508 Sum_probs=76.8
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 446789999999999999999999999999999999998765 8999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
..+
T Consensus 91 ~~~ 93 (103)
T 2cq3_A 91 TAR 93 (103)
T ss_dssp CSS
T ss_pred ccC
Confidence 764
No 170
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=129.88 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=76.5
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|++|.|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 4467799999999999999999999999999999999885 478999999999999999999999999999999999999
Q ss_pred ccc
Q 007673 387 AQR 389 (593)
Q Consensus 387 ~~~ 389 (593)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 171
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.67 E-value=1e-16 Score=135.81 Aligned_cols=84 Identities=24% Similarity=0.458 Sum_probs=78.4
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
...+++|||+|||..+++++|+++|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 446789999999999999999999999999999999887 4788999999999999999999999999999999999999
Q ss_pred ccchH
Q 007673 387 AQRKE 391 (593)
Q Consensus 387 ~~~~~ 391 (593)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 98754
No 172
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=2.2e-16 Score=132.92 Aligned_cols=81 Identities=31% Similarity=0.490 Sum_probs=77.5
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||..+++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 007673 388 Q 388 (593)
Q Consensus 388 ~ 388 (593)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 173
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=130.78 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=74.9
Q ss_pred cccceeeeccCCCCCCHHHHH----HHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v 384 (593)
..+++|||+|||.++++++|+ ++|++||.|.+|+|+.+..+ +|||||+|.+.++|.+|++.|||..++|++|.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356789999999999999999 99999999999999988766 899999999999999999999999999999999
Q ss_pred Eeccch
Q 007673 385 AVAQRK 390 (593)
Q Consensus 385 ~~~~~~ 390 (593)
.+++++
T Consensus 85 ~~a~~~ 90 (96)
T 2dgx_A 85 SLATGA 90 (96)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 999753
No 174
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=133.22 Aligned_cols=83 Identities=30% Similarity=0.452 Sum_probs=78.1
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4567899999999999999999999999999999999884 788999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++++
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 9764
No 175
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=130.84 Aligned_cols=86 Identities=19% Similarity=0.351 Sum_probs=78.4
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.......++|||+|||+++|+++|+++|+.|+ +|++++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34456789999999999999999999999773 788999999999999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 007673 103 IMYSHRDPS 111 (593)
Q Consensus 103 v~~s~~~~~ 111 (593)
|.|+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987644
No 176
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=131.31 Aligned_cols=81 Identities=25% Similarity=0.493 Sum_probs=76.1
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeE--------EEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 378 (593)
....++|||+|||.++++++|+++|++||.|.+ ++++.+ .+|+++|||||+|.+.++|.+|++.|||..++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 446789999999999999999999999999999 999988 56899999999999999999999999999999
Q ss_pred CeeeEEEecc
Q 007673 379 SKPLYVAVAQ 388 (593)
Q Consensus 379 ~~~l~v~~~~ 388 (593)
|+.|.|.+|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999974
No 177
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.4e-16 Score=136.47 Aligned_cols=85 Identities=16% Similarity=0.238 Sum_probs=79.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCC---eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 45678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred eccchHHHH
Q 007673 386 VAQRKEERR 394 (593)
Q Consensus 386 ~~~~~~~r~ 394 (593)
++..++...
T Consensus 94 ~a~~~~~~~ 102 (118)
T 2db1_A 94 KSHRTEMDW 102 (118)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHH
Confidence 998776543
No 178
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=2.3e-16 Score=134.76 Aligned_cols=83 Identities=30% Similarity=0.550 Sum_probs=78.1
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||..+++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999984 788999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++.+
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 9764
No 179
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=137.65 Aligned_cols=83 Identities=17% Similarity=0.291 Sum_probs=74.7
Q ss_pred CCCCccEEEEeCCCCCCCHHHHH----HHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLY----DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~----~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
+..++++|||+|||+++++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|.+|++.||+..|.|++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34568899999999999999865 7999999999998854 5789999999999999999999999999999999
Q ss_pred EEEeeccCCC
Q 007673 101 IRIMYSHRDP 110 (593)
Q Consensus 101 i~v~~s~~~~ 110 (593)
|+|.|+....
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998654
No 180
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=133.90 Aligned_cols=87 Identities=26% Similarity=0.487 Sum_probs=80.5
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||..+++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4568999999999999999999999999999999988 478899999999999999999999999999999999999999
Q ss_pred chHHHHHH
Q 007673 389 RKEERRAR 396 (593)
Q Consensus 389 ~~~~r~~~ 396 (593)
.+..+...
T Consensus 87 ~~~~~~~~ 94 (104)
T 1p1t_A 87 SEKNKEEL 94 (104)
T ss_dssp CTTHHHHH
T ss_pred Cccchhhh
Confidence 88766544
No 181
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6e-16 Score=130.46 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=73.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC-----cE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-----KS 100 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g-----~~ 100 (593)
....++|||+|||+++|+++|+++|+.||.|.+|+|++| |||||+|.+.++|++||+.||+..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456799999999999999999999999999999999886 899999999999999999999999999 99
Q ss_pred EEEeeccCCCC
Q 007673 101 IRIMYSHRDPS 111 (593)
Q Consensus 101 i~v~~s~~~~~ 111 (593)
|+|.++...+.
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999876543
No 182
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=134.71 Aligned_cols=84 Identities=21% Similarity=0.431 Sum_probs=79.1
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..++|||+|||+++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|++. ++..|.|+.|+|.|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 468999999999999999999999999999999999999999999999999999999999997 9999999999999987
Q ss_pred CCCCC
Q 007673 108 RDPSI 112 (593)
Q Consensus 108 ~~~~~ 112 (593)
.....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 66543
No 183
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.7e-16 Score=133.20 Aligned_cols=83 Identities=28% Similarity=0.464 Sum_probs=78.1
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|+|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3467799999999999999999999999999999999886 788999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+..+
T Consensus 92 a~~~ 95 (105)
T 1x5u_A 92 ASAH 95 (105)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9765
No 184
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=3.8e-16 Score=141.06 Aligned_cols=86 Identities=30% Similarity=0.486 Sum_probs=81.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++|+++|+++|+.||.|.+|+|++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 007673 105 YSHRDP 110 (593)
Q Consensus 105 ~s~~~~ 110 (593)
|+....
T Consensus 115 ~a~~~~ 120 (156)
T 1h2v_Z 115 WDAGFK 120 (156)
T ss_dssp EESCCC
T ss_pred ECCCCC
Confidence 997543
No 185
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=1e-16 Score=140.80 Aligned_cols=86 Identities=26% Similarity=0.412 Sum_probs=80.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..|.|+.|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 007673 105 YSHRDP 110 (593)
Q Consensus 105 ~s~~~~ 110 (593)
|+....
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 987653
No 186
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=3.1e-17 Score=133.51 Aligned_cols=79 Identities=29% Similarity=0.577 Sum_probs=74.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeeccCC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRD 109 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~~~ 109 (593)
++|||+|||.++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.+ |.+|++.||+..+.|+.|+|.|+...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999998764
No 187
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-16 Score=126.12 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=73.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||+++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..+.|+.|+|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4568999999999999999999999999999999997 37999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 007673 106 SHRDPSI 112 (593)
Q Consensus 106 s~~~~~~ 112 (593)
+...+..
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9766443
No 188
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=2.8e-16 Score=136.13 Aligned_cols=81 Identities=22% Similarity=0.452 Sum_probs=77.6
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..++|||+|||.++|+++|+++|+.||.|.+|++++|+.+++++|||||+|.+.++|.+|+ .||+..|.|+.|+|.|+.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999 799999999999999987
Q ss_pred CC
Q 007673 108 RD 109 (593)
Q Consensus 108 ~~ 109 (593)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 189
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=132.61 Aligned_cols=82 Identities=28% Similarity=0.463 Sum_probs=77.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 45679999999999999999999999999999999888 56889999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+++
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 190
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-16 Score=132.61 Aligned_cols=83 Identities=24% Similarity=0.479 Sum_probs=77.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
...+++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 3456789999999999999999999999999999999885 588999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+..+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9765
No 191
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2e-16 Score=132.86 Aligned_cols=80 Identities=20% Similarity=0.289 Sum_probs=73.4
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||+++||++|+++|+.| .|.+|+|++|+. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3446899999999999999999999999 899999999976 899999999999999999999 5999999999999987
Q ss_pred ccC
Q 007673 106 SHR 108 (593)
Q Consensus 106 s~~ 108 (593)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 653
No 192
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=133.90 Aligned_cols=83 Identities=28% Similarity=0.477 Sum_probs=77.0
Q ss_pred cccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 307 ~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
.....++|||+|||.++++++|+++|+.||.|.+|+++.+.. .++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345678999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++.+
T Consensus 104 a~~~ 107 (109)
T 2err_A 104 ATAR 107 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 9764
No 193
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.9e-16 Score=133.18 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=74.1
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCC--cccCCcEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF--TPLNNKSI 101 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~--~~i~g~~i 101 (593)
....++++|||+|||+++||++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.+++ ..|.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34556899999999999999999999999999999999875 58999999999999999998874 57999999
Q ss_pred EEeeccCCCCC
Q 007673 102 RIMYSHRDPSI 112 (593)
Q Consensus 102 ~v~~s~~~~~~ 112 (593)
+|.|+......
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999765443
No 194
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=132.78 Aligned_cols=83 Identities=23% Similarity=0.479 Sum_probs=77.8
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC--CCCCccEEEEEeCCHHHHHHHHHHh-CCceecCeeeEE
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYV 384 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~~-~~~~~~~~~l~v 384 (593)
....++|||+|||..+++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.| ||..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 4467899999999999999999999999999999999874 7889999999999999999999999 999999999999
Q ss_pred Eeccch
Q 007673 385 AVAQRK 390 (593)
Q Consensus 385 ~~~~~~ 390 (593)
.|++.+
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999765
No 195
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.6e-16 Score=130.67 Aligned_cols=82 Identities=32% Similarity=0.483 Sum_probs=76.3
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+..+ ++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 346789999999999999999999999999999999998544 7999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 91 ~~~ 93 (103)
T 2cqi_A 91 TTP 93 (103)
T ss_dssp CCT
T ss_pred CCC
Confidence 865
No 196
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.1e-16 Score=129.25 Aligned_cols=84 Identities=24% Similarity=0.433 Sum_probs=75.8
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
.....+.++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 344567899999999999999999999999999999999854 58999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 007673 103 IMYSHRDPSI 112 (593)
Q Consensus 103 v~~s~~~~~~ 112 (593)
|.|+......
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpj_A 83 VRFACHSASL 92 (99)
T ss_dssp EEESSCCSCC
T ss_pred EEEcCCCCCC
Confidence 9999876443
No 197
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.1e-16 Score=130.00 Aligned_cols=81 Identities=21% Similarity=0.429 Sum_probs=76.0
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++ +|+..++|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999884 68899999999999999999998 9999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
.++
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 198
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=131.06 Aligned_cols=81 Identities=37% Similarity=0.667 Sum_probs=75.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC--C--CCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--G--ISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g--~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
..++|||+|||.++++++|+++|+.||.|.+|+++.+.. | .++|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999998753 4 789999999999999999999999999999999999
Q ss_pred eccch
Q 007673 386 VAQRK 390 (593)
Q Consensus 386 ~~~~~ 390 (593)
+++.+
T Consensus 84 ~a~~~ 88 (98)
T 2cpf_A 84 ISERA 88 (98)
T ss_dssp CSSCS
T ss_pred EccCC
Confidence 99764
No 199
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.5e-16 Score=127.99 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=74.1
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccC--CcEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN--NKSI 101 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~--g~~i 101 (593)
....++++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.||+..+. |+.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l 85 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRL 85 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEE
Confidence 34566799999999999999999999999999999999764 579999999999999999999999999 9999
Q ss_pred EEeeccCCC
Q 007673 102 RIMYSHRDP 110 (593)
Q Consensus 102 ~v~~s~~~~ 110 (593)
+|.|+...+
T Consensus 86 ~V~~a~~~~ 94 (97)
T 1why_A 86 RVDFAKSGP 94 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999987653
No 200
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=133.31 Aligned_cols=82 Identities=37% Similarity=0.567 Sum_probs=78.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhc-CCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCce-ecCeeeEEEe
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSE-FGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM-IVSKPLYVAV 386 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~-~~~~~l~v~~ 386 (593)
...++|||+|||.++++++|+++|+. ||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||.. ++|++|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 46689999999999999999999999 999999999999899999999999999999999999999999 9999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+..+
T Consensus 87 a~~~ 90 (104)
T 2dhg_A 87 AIPK 90 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9765
No 201
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.65 E-value=1.7e-16 Score=133.51 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=72.9
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
+...++|||+|||+++|+++|+++|+.|| .|..+++..+ +++|||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 44578999999999999999999999999 8999988543 578999999999999999999999999999999999
Q ss_pred eccCCCC
Q 007673 105 YSHRDPS 111 (593)
Q Consensus 105 ~s~~~~~ 111 (593)
++...+.
T Consensus 101 ~a~~~p~ 107 (111)
T 2jvr_A 101 RDDNPPP 107 (111)
T ss_dssp ESCC---
T ss_pred ECCCCCC
Confidence 9876544
No 202
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=133.04 Aligned_cols=83 Identities=34% Similarity=0.594 Sum_probs=77.7
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||..+++++|+++|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|++.+||..++|++|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346789999999999999999999999999999999887 4688999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9865
No 203
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.7e-16 Score=138.69 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=79.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCC---eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 35678999999999999999999999999 899999999889999999999999999999999 99999999999999
Q ss_pred eccchHHHH
Q 007673 386 VAQRKEERR 394 (593)
Q Consensus 386 ~~~~~~~r~ 394 (593)
++..++..+
T Consensus 121 ~a~~~e~~~ 129 (136)
T 2hgl_A 121 KSHRTEMDW 129 (136)
T ss_dssp ECCHHHHHH
T ss_pred ECChHHHHH
Confidence 998776543
No 204
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=130.49 Aligned_cols=82 Identities=18% Similarity=0.401 Sum_probs=75.9
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
..++|||+|||+++++++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 34689999999999999999999999 899999999988999999999999999999999 6999999999999999977
Q ss_pred hHHH
Q 007673 390 KEER 393 (593)
Q Consensus 390 ~~~r 393 (593)
++..
T Consensus 93 ~~~~ 96 (109)
T 2dnn_A 93 RQWV 96 (109)
T ss_dssp HHHH
T ss_pred cchh
Confidence 6543
No 205
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6e-16 Score=127.72 Aligned_cols=84 Identities=20% Similarity=0.349 Sum_probs=74.9
Q ss_pred CCCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 21 GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 21 ~~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
........+++|||+|||+++|+++|+++|+.||.|. ++++.+ +++|||||+|.+.++|++|++.||+..|.|+.
T Consensus 11 ~~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 11 PPGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp CCCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3445566789999999999999999999999999996 677654 67899999999999999999999999999999
Q ss_pred EEEeeccCC
Q 007673 101 IRIMYSHRD 109 (593)
Q Consensus 101 i~v~~s~~~ 109 (593)
|+|.|+...
T Consensus 86 l~V~~a~~~ 94 (97)
T 2e5j_A 86 LRVALARQQ 94 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEEcCCC
Confidence 999998754
No 206
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=3.6e-16 Score=126.87 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=74.5
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
.++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.++|.+|+ .+||..++|+.|.|.+++.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4689999999999999999999999999999999885 7889999999999999999999 8999999999999999875
Q ss_pred h
Q 007673 390 K 390 (593)
Q Consensus 390 ~ 390 (593)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 207
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=131.30 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=75.2
Q ss_pred CCCccEEEEeCCCCCC------CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCc
Q 007673 26 QFLTTSLYVGDLDFNV------TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~------te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~ 99 (593)
...+++|||+|||+++ |+++|+++|+.||.|.+|++.+ .+++++|||||+|.+.++|.+|++.||+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 7899999999999999999983 5789999999999999999999999999999998
Q ss_pred -EEEEeeccCC
Q 007673 100 -SIRIMYSHRD 109 (593)
Q Consensus 100 -~i~v~~s~~~ 109 (593)
+|+|.|+...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998643
No 208
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=2.8e-16 Score=128.42 Aligned_cols=81 Identities=28% Similarity=0.453 Sum_probs=76.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|++||.|.+++++.+ +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45679999999999999999999999999999999985 78899999999999999999999999999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 209
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=132.38 Aligned_cols=77 Identities=19% Similarity=0.294 Sum_probs=70.8
Q ss_pred cccceeeeccCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCc--eecCeeeEEE
Q 007673 309 FQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 385 (593)
Q Consensus 309 ~~~~~l~V~nl~~-~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~--~~~~~~l~v~ 385 (593)
.++++|||+|||+ ++++++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.||+. .|.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3678999999999 9999999999999999999999876 689999999999999999999864 5999999999
Q ss_pred eccch
Q 007673 386 VAQRK 390 (593)
Q Consensus 386 ~~~~~ 390 (593)
|++.+
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 99854
No 210
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=124.79 Aligned_cols=77 Identities=22% Similarity=0.392 Sum_probs=71.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc-CCcccCCcEEEE
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL-NFTPLNNKSIRI 103 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l-n~~~i~g~~i~v 103 (593)
.....++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.| ++..+.|++|+|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456799999999999999999999999999999999863 689999999999999999998 999999999999
Q ss_pred eecc
Q 007673 104 MYSH 107 (593)
Q Consensus 104 ~~s~ 107 (593)
.|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 211
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=132.29 Aligned_cols=82 Identities=26% Similarity=0.422 Sum_probs=76.9
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 456899999999999999999999999999999999885 4889999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 91 ~~~ 93 (103)
T 2dnm_A 91 RYG 93 (103)
T ss_dssp SSC
T ss_pred CcC
Confidence 754
No 212
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.3e-16 Score=133.76 Aligned_cols=80 Identities=19% Similarity=0.361 Sum_probs=73.0
Q ss_pred cccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceecCeeeEE
Q 007673 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG--KMIVSKPLYV 384 (593)
Q Consensus 307 ~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~--~~~~~~~l~v 384 (593)
...++++|||+|||+++++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|.+|++.+++ ..+.|++|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 3446789999999999999999999999999999999876 79999999999999999999874 6899999999
Q ss_pred EeccchH
Q 007673 385 AVAQRKE 391 (593)
Q Consensus 385 ~~~~~~~ 391 (593)
.|++.++
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9998654
No 213
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=2.3e-16 Score=135.38 Aligned_cols=81 Identities=36% Similarity=0.549 Sum_probs=75.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|++||.|.+|+++.+ .+|+++|||||+|.+.++|.+|++.|||..++|+.|+|+|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 446789999999999999999999999999999999988 4688999999999999999999999999999999999999
Q ss_pred cc
Q 007673 387 AQ 388 (593)
Q Consensus 387 ~~ 388 (593)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 214
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.6e-16 Score=129.28 Aligned_cols=80 Identities=21% Similarity=0.349 Sum_probs=72.4
Q ss_pred cccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHh--CCceecCeeeEE
Q 007673 307 DKFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM--NGKMIVSKPLYV 384 (593)
Q Consensus 307 ~~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~--~~~~~~~~~l~v 384 (593)
...+.++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+ ++..+.|++|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999998875 889999999999999999987 577899999999
Q ss_pred EeccchH
Q 007673 385 AVAQRKE 391 (593)
Q Consensus 385 ~~~~~~~ 391 (593)
.|++.+.
T Consensus 86 ~~a~~~~ 92 (101)
T 2cq1_A 86 QYSNHKE 92 (101)
T ss_dssp EECSCSS
T ss_pred EEcCccc
Confidence 9998653
No 215
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.65 E-value=5.1e-16 Score=141.52 Aligned_cols=87 Identities=18% Similarity=0.284 Sum_probs=80.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
...+.++|||+|||+++|+++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 007673 105 YSHRDPS 111 (593)
Q Consensus 105 ~s~~~~~ 111 (593)
|+...+.
T Consensus 148 ~a~~~~~ 154 (165)
T 1rk8_A 148 WCFVKGP 154 (165)
T ss_dssp ESEECC-
T ss_pred EecCCCC
Confidence 9876543
No 216
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=133.41 Aligned_cols=83 Identities=22% Similarity=0.470 Sum_probs=77.1
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS-GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+.. |.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 456899999999999999999999999999999998864 889999999999999999999 999999999999999998
Q ss_pred chHHH
Q 007673 389 RKEER 393 (593)
Q Consensus 389 ~~~~r 393 (593)
.+..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 76554
No 217
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=2.6e-16 Score=151.00 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=76.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccC--CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVG--QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G--~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
..++|||+|||+++||++|+++|+.|| .|.+|+|++|+.+++++|||||+|.+.++|.+||+.||+..|.|+.|+|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred ccC
Q 007673 106 SHR 108 (593)
Q Consensus 106 s~~ 108 (593)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 218
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.65 E-value=4.9e-16 Score=134.57 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=77.6
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..+++|||+|||..+++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..++|++|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 46789999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred c
Q 007673 389 R 389 (593)
Q Consensus 389 ~ 389 (593)
.
T Consensus 113 ~ 113 (124)
T 2kt5_A 113 S 113 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 219
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=128.72 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=74.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC--CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
..++|||+|||.++++++|+++|+.||.|.+++++.+.. +.++|||||+|.+.++|.+|++.|||..++|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 356899999999999999999999999999999988753 338999999999999999999999999999999999998
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 220
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=133.29 Aligned_cols=83 Identities=25% Similarity=0.469 Sum_probs=77.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCee--------EEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTIT--------SCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~--------~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 378 (593)
....++|||+|||.++++++|+++|+.||.|. .|+|+.+ .+|.++|||||+|.+.++|.+|++.|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34678999999999999999999999999999 6999988 67899999999999999999999999999999
Q ss_pred CeeeEEEeccch
Q 007673 379 SKPLYVAVAQRK 390 (593)
Q Consensus 379 ~~~l~v~~~~~~ 390 (593)
|+.|.|.+++.+
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999999764
No 221
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.3e-16 Score=126.42 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=75.9
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|+.| .|.+|+|+.+.+|+++|||||+|.+.++|.+|++ +||..|+|+.|.|.+++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 356789999999999999999999999 9999999999889999999999999999999999 99999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 222
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-16 Score=130.77 Aligned_cols=82 Identities=28% Similarity=0.513 Sum_probs=76.9
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999874 6789999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 765
No 223
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=3.6e-16 Score=135.04 Aligned_cols=85 Identities=22% Similarity=0.317 Sum_probs=76.4
Q ss_pred ccccceeeeccCCCCCCHHHHH----HHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeE
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~ 383 (593)
..++++|||+||++.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|.+|++.|||..|.|++|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 3457899999999999999876 6999999999988764 578999999999999999999999999999999999
Q ss_pred EEeccchHHHH
Q 007673 384 VAVAQRKEERR 394 (593)
Q Consensus 384 v~~~~~~~~r~ 394 (593)
|.|++.+....
T Consensus 104 V~~a~~~~~~~ 114 (127)
T 2a3j_A 104 ITFSETPQSQV 114 (127)
T ss_dssp EEECCCCCHHH
T ss_pred EEEccCcchhc
Confidence 99999876554
No 224
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=125.84 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=68.2
Q ss_pred ccEEEEeCCCCCC------CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCc-EE
Q 007673 29 TTSLYVGDLDFNV------TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK-SI 101 (593)
Q Consensus 29 ~~sL~V~nLp~~~------te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~-~i 101 (593)
+++|||+|||.++ |+++|+++|++||.|.+|++.+ .+++++|||||+|.+.++|.+|++.||+..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7899999999999999999883 5789999999999999999999999999999999 88
Q ss_pred EE
Q 007673 102 RI 103 (593)
Q Consensus 102 ~v 103 (593)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 225
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=129.84 Aligned_cols=83 Identities=20% Similarity=0.374 Sum_probs=76.8
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc--------
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL-------- 96 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i-------- 96 (593)
.....++|||+|||+++|+++|+++|+.||.|.+|+++++. +++++|||||+|.+.++|.+|++.||+..|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred CCcEEEEeeccC
Q 007673 97 NNKSIRIMYSHR 108 (593)
Q Consensus 97 ~g~~i~v~~s~~ 108 (593)
.+++|+|.|+..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 577899988763
No 226
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-16 Score=133.15 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=77.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++|+++|+++|+.||.|.+ .++++..+++++|||||+|.+.++|.+|++ ||+..|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999988 777888888999999999999999999999 99999999999999
Q ss_pred eccCCC
Q 007673 105 YSHRDP 110 (593)
Q Consensus 105 ~s~~~~ 110 (593)
|+....
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 987643
No 227
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=121.40 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=68.6
Q ss_pred CCCccEEEEeCCCCCCCHHH----HHHHHhcc-CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQ----LYDLFSQV-GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~----L~~~F~~~-G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
++..++|||+|||.++++++ |+++|++| |+|.+| |+ |+|||.|.+.++|.+|++.|++..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 33445599999999999998 66899999 599999 33 99999999999999999999999999999
Q ss_pred EEEeeccCCCCCC
Q 007673 101 IRIMYSHRDPSIR 113 (593)
Q Consensus 101 i~v~~s~~~~~~~ 113 (593)
|+|.|+....+..
T Consensus 76 i~v~~A~~~sd~~ 88 (96)
T 2diu_A 76 IIVSFTPKNRELC 88 (96)
T ss_dssp CEEESSCCSCCCC
T ss_pred EEEEecCCCccee
Confidence 9999998776543
No 228
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.64 E-value=9e-17 Score=133.82 Aligned_cols=77 Identities=21% Similarity=0.399 Sum_probs=71.5
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||.++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.||+..++|+.|+|.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 4457899999999999999999999999999999997 4578999999999999999999999999999999999
Q ss_pred ccC
Q 007673 106 SHR 108 (593)
Q Consensus 106 s~~ 108 (593)
+..
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 764
No 229
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=130.38 Aligned_cols=81 Identities=27% Similarity=0.448 Sum_probs=75.7
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC--CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
....++|||+|||.++++++|+++|+.|| |.+|+|+.+.. |.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 34668999999999999999999999999 99999998864 889999999999999999999 999999999999999
Q ss_pred eccch
Q 007673 386 VAQRK 390 (593)
Q Consensus 386 ~~~~~ 390 (593)
++..+
T Consensus 90 ~a~~~ 94 (104)
T 1wi8_A 90 VADQA 94 (104)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 99865
No 230
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.4e-16 Score=129.09 Aligned_cols=81 Identities=25% Similarity=0.434 Sum_probs=76.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCee-EEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCee----e
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTIT-SCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP----L 382 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~-~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~----l 382 (593)
...++|||+|||.++++++|+++|++||.|. +|+++.+. +|.++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3567999999999999999999999999999 99999885 7889999999999999999999999999999999 9
Q ss_pred EEEeccc
Q 007673 383 YVAVAQR 389 (593)
Q Consensus 383 ~v~~~~~ 389 (593)
.|.|++.
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9999864
No 231
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.64 E-value=3.9e-16 Score=135.77 Aligned_cols=83 Identities=25% Similarity=0.348 Sum_probs=77.8
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.+. +|.++|||||+|.+.++|.+|++.|||..|+|++|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4467899999999999999999999999999999999884 678999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+..+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9865
No 232
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.5e-16 Score=129.78 Aligned_cols=83 Identities=23% Similarity=0.479 Sum_probs=76.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||.++++++|+++|+.||.|.+|+++++ +|||||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 456789999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred ccCCCCCCC
Q 007673 106 SHRDPSIRK 114 (593)
Q Consensus 106 s~~~~~~~~ 114 (593)
+...+....
T Consensus 96 a~~~~~~~~ 104 (109)
T 1x4g_A 96 GKESPDMTS 104 (109)
T ss_dssp CCCCCSSCC
T ss_pred cCCCCCCCC
Confidence 987765443
No 233
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.64 E-value=8.2e-16 Score=124.17 Aligned_cols=79 Identities=22% Similarity=0.464 Sum_probs=73.0
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++ +++..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3467799999999999999999999999999999999885 58999999999999999999996 588899999999987
Q ss_pred c
Q 007673 387 A 387 (593)
Q Consensus 387 ~ 387 (593)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 234
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.8e-16 Score=124.84 Aligned_cols=80 Identities=29% Similarity=0.459 Sum_probs=73.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||+++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34566899999999999999999999999999999999853 9999999999999999999999999999999
Q ss_pred eeccCCCC
Q 007673 104 MYSHRDPS 111 (593)
Q Consensus 104 ~~s~~~~~ 111 (593)
.|+.....
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99976543
No 235
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-16 Score=133.42 Aligned_cols=83 Identities=10% Similarity=0.115 Sum_probs=77.0
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCC---eEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ---VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~---V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
......++|||+|||+++|+++|+++|+.||. |.+|++++|+. ++++|||||+|.+.++|++||+ +|+..+.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34556889999999999999999999999998 89999999987 9999999999999999999999 9999999999
Q ss_pred EEEeeccC
Q 007673 101 IRIMYSHR 108 (593)
Q Consensus 101 i~v~~s~~ 108 (593)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99988754
No 236
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=3.1e-16 Score=134.81 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=74.6
Q ss_pred CCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeE--EEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 23 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVL--SVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~--~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
.......++|||+|||+++||++|+++|+.| .|. +|+|++|+. ++++|||||+|.+.++|++|++. ++..|.|+.
T Consensus 36 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~ 112 (126)
T 2hgm_A 36 SADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRY 112 (126)
T ss_dssp TTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEE
Confidence 3445678899999999999999999999999 677 999999987 89999999999999999999995 779999999
Q ss_pred EEEeeccC
Q 007673 101 IRIMYSHR 108 (593)
Q Consensus 101 i~v~~s~~ 108 (593)
|+|.++.+
T Consensus 113 I~V~~a~~ 120 (126)
T 2hgm_A 113 IEVFKSSQ 120 (126)
T ss_dssp CCCEEECH
T ss_pred EEEEECCH
Confidence 99987754
No 237
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.3e-16 Score=135.60 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=77.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
.+....++|||+|||+++|+++|+++|+.||.|.++.++.+..+++++|||||+|.+.++|++||+ +|+..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 344567899999999999999999999999999997777888899999999999999999999999 9999999999999
Q ss_pred eeccC
Q 007673 104 MYSHR 108 (593)
Q Consensus 104 ~~s~~ 108 (593)
.++..
T Consensus 99 ~~a~~ 103 (124)
T 1wel_A 99 HPITK 103 (124)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98754
No 238
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=4.1e-16 Score=131.02 Aligned_cols=83 Identities=28% Similarity=0.586 Sum_probs=77.1
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCcee---cCeeeE
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMI---VSKPLY 383 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~---~~~~l~ 383 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 3467799999999999999999999999999999999885 588999999999999999999999999988 899999
Q ss_pred EEeccch
Q 007673 384 VAVAQRK 390 (593)
Q Consensus 384 v~~~~~~ 390 (593)
|.++..+
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9999864
No 239
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=2.8e-16 Score=123.09 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=70.3
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
+|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++ +||..++|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999885 78999999999999999999998 9999999999999875
No 240
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=132.47 Aligned_cols=83 Identities=22% Similarity=0.359 Sum_probs=75.9
Q ss_pred ccccceeeeccCCCCCCHHHHH---HHhhcCCCeeEEEEeeCCC----CCCccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLK---ELFSEFGTITSCKVMRDPS----GISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~---~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 380 (593)
..+.++|||+|||.++++++|+ ++|++||.|.+|+|+.+.. +.++|||||+|.+.++|.+|++.|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 9999999999999988753 35679999999999999999999999999999
Q ss_pred eeEEEeccch
Q 007673 381 PLYVAVAQRK 390 (593)
Q Consensus 381 ~l~v~~~~~~ 390 (593)
+|.|.|+.++
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999999865
No 241
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=6.8e-16 Score=130.88 Aligned_cols=82 Identities=30% Similarity=0.519 Sum_probs=77.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhC------CceecCee
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMN------GKMIVSKP 381 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~------~~~~~~~~ 381 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.+| +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457799999999999999999999999999999999884 58899999999999999999999999 99999999
Q ss_pred eEEEeccch
Q 007673 382 LYVAVAQRK 390 (593)
Q Consensus 382 l~v~~~~~~ 390 (593)
|.|.|+.++
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999765
No 242
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=2e-16 Score=131.41 Aligned_cols=81 Identities=25% Similarity=0.438 Sum_probs=73.7
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC--CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
....++|||+|||.++++++|+++|+.|| |.+|+|+.+. +|+++|||||+|.+.++|.+|+ .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999999885 7899999999999999999999 899999999999999
Q ss_pred eccch
Q 007673 386 VAQRK 390 (593)
Q Consensus 386 ~~~~~ 390 (593)
+++.+
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99764
No 243
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.63 E-value=1.1e-15 Score=126.09 Aligned_cols=77 Identities=19% Similarity=0.499 Sum_probs=70.8
Q ss_pred CCCCccEEEEeCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 25 NQFLTTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~-~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
...++++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.+|+..+.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 445689999999998 99999999999999999999983 589999999999999999999999999999999
Q ss_pred eeccCC
Q 007673 104 MYSHRD 109 (593)
Q Consensus 104 ~~s~~~ 109 (593)
.|+...
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998653
No 244
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=133.49 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=79.3
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCe----eEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTI----TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i----~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v 384 (593)
...++|||+|||+++|+++|+++|+.||.| .+|+|+.+.+|+++|||||+|.+.++|.+|++. |+..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 356789999999999999999999999975 689999998999999999999999999999996 999999999999
Q ss_pred EeccchHHHHHH
Q 007673 385 AVAQRKEERRAR 396 (593)
Q Consensus 385 ~~~~~~~~r~~~ 396 (593)
..+..++.++..
T Consensus 100 ~~a~~~e~~~~~ 111 (123)
T 2dha_A 100 FRSTAAEVQQVL 111 (123)
T ss_dssp EEECHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 999887766544
No 245
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.63 E-value=1.3e-16 Score=124.89 Aligned_cols=75 Identities=15% Similarity=0.385 Sum_probs=71.5
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
+|||+|||+++|+++|+++|+.||.|.+|++.+++.+++++|||||+|.+.++|.+|++. ++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999994 888999999999864
No 246
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.9e-16 Score=129.68 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=74.5
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|..+ +.++|||||+|.+.++|.+|++.||+..|+|+.|.|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 345679999999999999999999999999999999765 558999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 753
No 247
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=133.41 Aligned_cols=85 Identities=12% Similarity=0.151 Sum_probs=79.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCC---eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGT---ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~---i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
...++|||+|||+++|+++|+++|+.||. |.+|+|+.+..|+++|||||+|.+.++|.+|++ +|+..++|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 45678999999999999999999999988 899999999889999999999999999999999 99999999999999
Q ss_pred eccchHHHH
Q 007673 386 VAQRKEERR 394 (593)
Q Consensus 386 ~~~~~~~r~ 394 (593)
++..++...
T Consensus 88 ~a~~~~~~~ 96 (107)
T 2lmi_A 88 EINNEDVDA 96 (107)
T ss_dssp ECCHHHHHH
T ss_pred ECCHHHHHH
Confidence 998876554
No 248
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.9e-16 Score=134.12 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=75.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
..++++|||+|||+++|+++|+++|+.||.|.++.+..+..+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45679999999999999999999999999995544433334789999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007673 106 SHRDPS 111 (593)
Q Consensus 106 s~~~~~ 111 (593)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 976543
No 249
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=3.5e-16 Score=129.20 Aligned_cols=82 Identities=26% Similarity=0.491 Sum_probs=75.3
Q ss_pred CCCccEEEEeCCCCCCCHHHHH----HHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLY----DLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~----~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
..++++|||+|||+++++++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4568999999999999999999 9999999999999874 46788999999999999999999999999999999
Q ss_pred EEeeccCCC
Q 007673 102 RIMYSHRDP 110 (593)
Q Consensus 102 ~v~~s~~~~ 110 (593)
+|.|+..++
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999987754
No 250
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=9e-16 Score=128.21 Aligned_cols=81 Identities=22% Similarity=0.392 Sum_probs=75.2
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.|| |.+|+|+.+. +|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34578999999999999999999999997 9999999885 5889999999999999999999 8999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+..+
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9764
No 251
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=5e-16 Score=129.28 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.8
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCc--eecCeeeEEE
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGK--MIVSKPLYVA 385 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~--~~~~~~l~v~ 385 (593)
..+.++|||+|||+++++++|+++|++||.|.+|.++++ ||||||+|.+.++|.+|++.|++. .+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345679999999999999999999999999999998864 789999999999999999998654 5899999999
Q ss_pred eccch
Q 007673 386 VAQRK 390 (593)
Q Consensus 386 ~~~~~ 390 (593)
|++.+
T Consensus 87 ~a~~~ 91 (104)
T 1wex_A 87 YSTSK 91 (104)
T ss_dssp ECSSS
T ss_pred EccCc
Confidence 99865
No 252
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=6.7e-16 Score=134.12 Aligned_cols=83 Identities=24% Similarity=0.479 Sum_probs=77.9
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|.|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4467899999999999999999999999999999998885 788999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+..+
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9765
No 253
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=123.22 Aligned_cols=80 Identities=24% Similarity=0.393 Sum_probs=73.2
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||+++|+++|+++|+.||.|.+|++.++ ||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34567899999999999999999999999999999999753 9999999999999999999999999999999
Q ss_pred eeccCCCC
Q 007673 104 MYSHRDPS 111 (593)
Q Consensus 104 ~~s~~~~~ 111 (593)
.|+.....
T Consensus 77 ~~a~~~~~ 84 (92)
T 2dgt_A 77 QLSTSRLR 84 (92)
T ss_dssp EESSCCCS
T ss_pred EEccCCCC
Confidence 99976543
No 254
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=9.9e-16 Score=128.89 Aligned_cols=79 Identities=22% Similarity=0.507 Sum_probs=72.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
......++|||+|||.++|+++|+++|+.||.|.+|+++ +|||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345668999999999999999999999999999999998 489999999999999999999999999999999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.|+...+
T Consensus 98 ~~a~~~~ 104 (108)
T 2jvo_A 98 VYSKLPA 104 (108)
T ss_dssp ESCSCCC
T ss_pred EEecCCC
Confidence 9987653
No 255
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.5e-16 Score=130.93 Aligned_cols=82 Identities=33% Similarity=0.631 Sum_probs=76.8
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--------cCe
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--------VSK 380 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~--------~~~ 380 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+.+|.++|||||+|.+.++|.+|++.|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 456799999999999999999999999999999999998899999999999999999999999999999 578
Q ss_pred eeEEEeccch
Q 007673 381 PLYVAVAQRK 390 (593)
Q Consensus 381 ~l~v~~~~~~ 390 (593)
+|.|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999753
No 256
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.6e-16 Score=129.62 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=75.7
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeE-EEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||+++++++|+++|+.||.|.+ |+|+.+.+|+++|||||+|.+.++|.+|++. |+..++|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 45678999999999999999999999999987 8898888999999999999999999999997 999999999999988
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
..+
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 754
No 257
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=125.28 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=67.6
Q ss_pred ceeeeccCCCCC------CHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe-eeEE
Q 007673 312 LNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PLYV 384 (593)
Q Consensus 312 ~~l~V~nl~~~~------~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-~l~v 384 (593)
++|||+|||..+ ++++|+++|++||.|.+++++ ..+|+++|||||+|.+.++|.+|++.|||..++|+ +|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 689999999999 679999999999999999987 56789999999999999999999999999999999 8876
No 258
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.5e-16 Score=129.93 Aligned_cols=81 Identities=15% Similarity=0.191 Sum_probs=72.2
Q ss_pred CCCCccEEEEeCCCCC-CCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCC--cccCCcEE
Q 007673 25 NQFLTTSLYVGDLDFN-VTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF--TPLNNKSI 101 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~-~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~--~~i~g~~i 101 (593)
...++++|||+|||++ +||++|+++|++||.|.+|++.+ ++|||||+|.+.++|.+|++.|++ ..|.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3567899999999998 99999999999999999999974 468999999999999999998864 45999999
Q ss_pred EEeeccCCCC
Q 007673 102 RIMYSHRDPS 111 (593)
Q Consensus 102 ~v~~s~~~~~ 111 (593)
+|.|+.....
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999976543
No 259
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=8.2e-16 Score=129.35 Aligned_cols=78 Identities=22% Similarity=0.219 Sum_probs=71.6
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCC-CeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFG-TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G-~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||+++++++|+++|++|| .|..+++..+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 467899999999999999999999999 8999988643 478999999999999999999999999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 260
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=130.41 Aligned_cols=82 Identities=27% Similarity=0.399 Sum_probs=76.1
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.+++ .|.|+.|.|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 4467899999999999999999999999999999999884 688999999999999999999999998 89999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+..+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9653
No 261
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=4.9e-16 Score=130.21 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=74.4
Q ss_pred ccceeeeccCCCCC------CHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe-ee
Q 007673 310 QGLNLYIKNLGDSI------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK-PL 382 (593)
Q Consensus 310 ~~~~l~V~nl~~~~------~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-~l 382 (593)
..++|||+|||..+ ++++|+++|++||.|.+|+|+ ..+|.++|||||+|.+.++|.+|+..|||..++|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 46789999999999 789999999999999999988 56789999999999999999999999999999998 99
Q ss_pred EEEeccch
Q 007673 383 YVAVAQRK 390 (593)
Q Consensus 383 ~v~~~~~~ 390 (593)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998753
No 262
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.6e-16 Score=129.53 Aligned_cols=82 Identities=24% Similarity=0.436 Sum_probs=76.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+ .+|.++|||||+|.+.++|.+|++. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 346789999999999999999999999999999999998 5788999999999999999999998 99999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+.++
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 8765
No 263
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=137.88 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=76.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeE--EEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCc----eecCee
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--CKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGK----MIVSKP 381 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~--v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~----~~~~~~ 381 (593)
...++|||+|||+++|+++|+++|++||.|.. |+|+.|. +|+++|||||+|.+. +|.+|+..|||. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45678999999999999999999999999977 9999987 899999999999999 999999999999 999999
Q ss_pred eEEEeccch
Q 007673 382 LYVAVAQRK 390 (593)
Q Consensus 382 l~v~~~~~~ 390 (593)
|.|.+++.+
T Consensus 100 l~V~~a~~~ 108 (131)
T 2m2b_A 100 INVEFAKGS 108 (131)
T ss_dssp CCCEECCCS
T ss_pred EEEEECCCC
Confidence 999999764
No 264
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=1.5e-15 Score=129.65 Aligned_cols=80 Identities=23% Similarity=0.389 Sum_probs=74.9
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
.+++|||+|||..+++++|+++|+.||.|.+|+++.+ +.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 5678999999999999999999999999999999876 56799999999999999999999999999999999999986
Q ss_pred hH
Q 007673 390 KE 391 (593)
Q Consensus 390 ~~ 391 (593)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 43
No 265
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=128.42 Aligned_cols=82 Identities=33% Similarity=0.539 Sum_probs=73.8
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.+ +..++|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 356799999999999999999999999999999999985 5899999999999999999999976 59999999999999
Q ss_pred cchH
Q 007673 388 QRKE 391 (593)
Q Consensus 388 ~~~~ 391 (593)
..+.
T Consensus 102 ~~~~ 105 (109)
T 2rs2_A 102 FPRR 105 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 266
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=9.1e-16 Score=131.61 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=73.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCe----EEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQV----LSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V----~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
....++|||+|||+++||++|+++|+.||.| .+|+|++| .+++++|||||+|.+.++|++|++. |+..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 69999999 4899999999999999999999996 9999999999
Q ss_pred EEeecc
Q 007673 102 RIMYSH 107 (593)
Q Consensus 102 ~v~~s~ 107 (593)
+|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 887654
No 267
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.9e-16 Score=129.90 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=73.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||+++|+++|+++|+.||. .+|+|+.+.+|+++|||||+|.+.++|.+|++ +|+..|+++.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 45678999999999999999999999995 59999999999999999999999999999995 79999999999999876
Q ss_pred c
Q 007673 389 R 389 (593)
Q Consensus 389 ~ 389 (593)
.
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 268
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6e-16 Score=128.00 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=74.4
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+++++.+ .+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35678999999999999999999999999988776655 57889999999999999999999999999999999999998
Q ss_pred cc
Q 007673 388 QR 389 (593)
Q Consensus 388 ~~ 389 (593)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 269
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=5.9e-16 Score=121.86 Aligned_cols=75 Identities=35% Similarity=0.578 Sum_probs=71.3
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
++|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++.++ ..++|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999885 68899999999999999999999999 9999999999987
No 270
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-16 Score=126.34 Aligned_cols=79 Identities=27% Similarity=0.445 Sum_probs=73.8
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|+.||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..+.|+.|++++..
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 5679999999999999999999999999999999988 468899999999999999999999999999999999887654
No 271
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=6.2e-16 Score=127.12 Aligned_cols=79 Identities=18% Similarity=0.354 Sum_probs=72.9
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|++||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..|+|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4578999999999999999999999999998877765 567899999999999999999999999999999999999875
No 272
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-16 Score=130.80 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=70.5
Q ss_pred ccccceeeeccCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceecCeeeEE
Q 007673 308 KFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYV 384 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~-~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~--~~~~~~~~l~v 384 (593)
..++++|||+|||++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|.+|++.|+ +..|.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999998 99999999999999999999975 48999999999999999999886 45699999999
Q ss_pred Eeccch
Q 007673 385 AVAQRK 390 (593)
Q Consensus 385 ~~~~~~ 390 (593)
.|++.+
T Consensus 97 ~~a~~~ 102 (112)
T 1x4f_A 97 DLSEKY 102 (112)
T ss_dssp EEECSC
T ss_pred EECccc
Confidence 999765
No 273
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.8e-15 Score=121.77 Aligned_cols=82 Identities=20% Similarity=0.306 Sum_probs=73.4
Q ss_pred CCCCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 22 ASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 22 ~~~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
......+.++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3444567899999996 99999999999999999999983 567999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 007673 102 RIMYSHRDPS 111 (593)
Q Consensus 102 ~v~~s~~~~~ 111 (593)
+|.|+...+.
T Consensus 80 ~v~~a~~~~~ 89 (97)
T 1x5p_A 80 KVNIARKQPM 89 (97)
T ss_dssp EEECCSSCCC
T ss_pred EEEECCCCCC
Confidence 9999977644
No 274
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.5e-16 Score=133.00 Aligned_cols=85 Identities=19% Similarity=0.357 Sum_probs=77.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeE-EEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS-CKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~-v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||+++|+++|+++|+.||.|.+ +.+..+.+|+++|||||+|.+.++|.+|++ +||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 35679999999999999999999999999988 455566789999999999999999999999 9999999999999999
Q ss_pred cchHHHH
Q 007673 388 QRKEERR 394 (593)
Q Consensus 388 ~~~~~r~ 394 (593)
..++...
T Consensus 102 ~~~~~~~ 108 (124)
T 1wel_A 102 TKKGMLE 108 (124)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 9877544
No 275
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=135.24 Aligned_cols=82 Identities=34% Similarity=0.521 Sum_probs=77.0
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456789999999999999999999999999999998885 5789999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 865
No 276
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.1e-15 Score=127.10 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=71.8
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|+.||.|.++++.. ++|||||+|.+.++|.+|+..|||..++|+.|.|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3568999999999999999999999999999999983 58999999999999999999999999999999999987
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 277
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.3e-15 Score=126.81 Aligned_cols=80 Identities=29% Similarity=0.419 Sum_probs=73.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||.++++++|+++|++||.| +++.+.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3457899999999999999999999999977 5677778999999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 278
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.61 E-value=5.6e-16 Score=127.93 Aligned_cols=83 Identities=33% Similarity=0.503 Sum_probs=76.3
Q ss_pred cccceeeeccCCCCCCHHHHH----HHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLK----ELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v 384 (593)
.++++|||+|||.++++++|+ ++|+.||.|.+|++.. +|.++|||||+|.+.++|.+|++.|||..++|+.|.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 467899999999999999999 9999999999999874 4678999999999999999999999999999999999
Q ss_pred EeccchHHH
Q 007673 385 AVAQRKEER 393 (593)
Q Consensus 385 ~~~~~~~~r 393 (593)
.|++.+...
T Consensus 84 ~~a~~~~~~ 92 (97)
T 1nu4_A 84 QYAKTDSDI 92 (97)
T ss_dssp EECSSCCTH
T ss_pred EEccCCCcc
Confidence 999876544
No 279
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.61 E-value=7.5e-16 Score=128.46 Aligned_cols=81 Identities=22% Similarity=0.524 Sum_probs=75.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||+++++++|+++|+.||.|.+|++.+|. +++++|||||+|.+.++|++|++ ++..++|+.|+|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 89999999999999999999999 88899999999998
Q ss_pred ccCC
Q 007673 106 SHRD 109 (593)
Q Consensus 106 s~~~ 109 (593)
+...
T Consensus 83 a~~~ 86 (102)
T 2xs2_A 83 AIRK 86 (102)
T ss_dssp EEEC
T ss_pred CCcC
Confidence 8654
No 280
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.8e-17 Score=139.19 Aligned_cols=88 Identities=22% Similarity=0.379 Sum_probs=81.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEE--------EEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccC
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLS--------VRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN 97 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~--------i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~ 97 (593)
..+.++|||+|||.++++++|+++|+.||.|.+ |++++|+.+++++|||||+|.+.++|.+|++.||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 346789999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CcEEEEeeccCCCCCC
Q 007673 98 NKSIRIMYSHRDPSIR 113 (593)
Q Consensus 98 g~~i~v~~s~~~~~~~ 113 (593)
|+.|+|.|+...+...
T Consensus 84 g~~l~V~~a~~~~~~~ 99 (116)
T 2lcw_A 84 GNPIKVSFATRRADFN 99 (116)
Confidence 9999999998765443
No 281
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=2.7e-16 Score=137.90 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=74.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++||++|+++|+.|| |.+|+|++|+. ++++|||||+|.+.++|++|| .+|+..|.|+.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 66999999976 899999999999999999999 689999999999999
Q ss_pred eccCCC
Q 007673 105 YSHRDP 110 (593)
Q Consensus 105 ~s~~~~ 110 (593)
++....
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 877643
No 282
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=1.9e-16 Score=166.29 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=77.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+||+..+|+++|+++|+.||.|..|.|+.+ .+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 34579999999999999999999999999999999988 47889999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
..+
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 864
No 283
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.61 E-value=3.1e-16 Score=127.55 Aligned_cols=78 Identities=33% Similarity=0.530 Sum_probs=72.0
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
++|||+|||.++++++|+++|+.||.|.+++++.+. +|.++|||||+|.+.+ |.+|+..|||..++|++|.|.++..+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 479999999999999999999999999999999885 5889999999999999 99999999999999999999999765
No 284
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=3.5e-15 Score=124.57 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=71.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
..+.++|||+|||+++|+++|+++|+.||.|.+|++.+ |||||+|.+.++|++|++.||+..|.|+.|+|.|
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 34579999999999999999999999999999999874 5999999999999999999999999999999999
Q ss_pred ccCCCC
Q 007673 106 SHRDPS 111 (593)
Q Consensus 106 s~~~~~ 111 (593)
+.....
T Consensus 80 a~~~~~ 85 (103)
T 2dgu_A 80 AKPPDQ 85 (103)
T ss_dssp CCCCCC
T ss_pred cCCCcc
Confidence 876543
No 285
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-15 Score=121.03 Aligned_cols=76 Identities=26% Similarity=0.447 Sum_probs=71.1
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEM-NGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~-~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|++||.|.+++++.+ +|||||+|.+.++|.+|++.| +|..++|++|.|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 345679999999999999999999999999999999874 789999999999999999999 99999999999999
Q ss_pred cc
Q 007673 387 AQ 388 (593)
Q Consensus 387 ~~ 388 (593)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 286
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.60 E-value=1.6e-15 Score=131.36 Aligned_cols=79 Identities=20% Similarity=0.377 Sum_probs=74.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|+.||.|.+|+++.+ .+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3568999999999999999999999999999999988 57899999999999999999999 799999999999999987
Q ss_pred c
Q 007673 389 R 389 (593)
Q Consensus 389 ~ 389 (593)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 287
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=2e-15 Score=138.77 Aligned_cols=84 Identities=29% Similarity=0.440 Sum_probs=79.2
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++++++|+++|+.||.|.+|+|+++. +++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred eccCC
Q 007673 105 YSHRD 109 (593)
Q Consensus 105 ~s~~~ 109 (593)
|+...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98754
No 288
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=122.05 Aligned_cols=75 Identities=21% Similarity=0.459 Sum_probs=70.5
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 456799999999999999999999999999999987 5799999999999999999999999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 289
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=124.24 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=72.0
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceec--CeeeEEEe
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV--SKPLYVAV 386 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~--~~~l~v~~ 386 (593)
.+.++|||+|||.++++++|+++|++||.|.+|++..+ +|||||+|.+.++|.+|++.|||..+. |+.|.|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 35679999999999999999999999999999999865 789999999999999999999999999 99999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++++
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9864
No 290
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.8e-15 Score=129.28 Aligned_cols=80 Identities=34% Similarity=0.510 Sum_probs=75.1
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 45789999999999999999999999999999999984 588999999999999999999998 9999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
++
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 291
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2.1e-15 Score=126.92 Aligned_cols=78 Identities=26% Similarity=0.574 Sum_probs=72.4
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||.++++++|+++|++||.|.+|+++ +|||||+|.+.++|.+|++.|||..++|+.|.|.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4467899999999999999999999999999999987 679999999999999999999999999999999999
Q ss_pred cchHH
Q 007673 388 QRKEE 392 (593)
Q Consensus 388 ~~~~~ 392 (593)
+.+..
T Consensus 101 ~~~~~ 105 (108)
T 2jvo_A 101 KLPAK 105 (108)
T ss_dssp SCCC-
T ss_pred cCCCC
Confidence 87543
No 292
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.7e-15 Score=124.64 Aligned_cols=78 Identities=21% Similarity=0.461 Sum_probs=70.6
Q ss_pred CCCCccEEEEeCCCC-CCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 25 NQFLTTSLYVGDLDF-NVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~-~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
...++++|||+|||+ ++|+++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345689999999998 99999999999999999999994 589999999999999999999999999999999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.|+....
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9987654
No 293
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=2.9e-15 Score=126.20 Aligned_cols=75 Identities=24% Similarity=0.325 Sum_probs=71.3
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC-----eeeEE
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-----KPLYV 384 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~-----~~l~v 384 (593)
..++|||+|||.++++++|+++|+.||.|.+|+|+.+ |||||+|.+.++|.+|++.|||..|.| +.|.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 5679999999999999999999999999999999886 799999999999999999999999999 99999
Q ss_pred Eeccch
Q 007673 385 AVAQRK 390 (593)
Q Consensus 385 ~~~~~~ 390 (593)
.+++++
T Consensus 88 ~~a~~~ 93 (108)
T 1x4c_A 88 KVDGPR 93 (108)
T ss_dssp EESSCC
T ss_pred EeCCCC
Confidence 999864
No 294
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=124.02 Aligned_cols=79 Identities=27% Similarity=0.380 Sum_probs=70.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCC-eEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCC-cccCCcEEEE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQ-VLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF-TPLNNKSIRI 103 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~-V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~-~~i~g~~i~v 103 (593)
....++|||+|||+++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|++|++.||+ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6666663 468999999999999999999999 9999999999
Q ss_pred eeccCCCC
Q 007673 104 MYSHRDPS 111 (593)
Q Consensus 104 ~~s~~~~~ 111 (593)
.|+.....
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99976543
No 295
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=128.80 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=71.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
...++|||+|||+++|+++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.||+..|.|++|+|.|+
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3478999999999999999999999999999998864 5689999999999999999999999999999999998
Q ss_pred cCC
Q 007673 107 HRD 109 (593)
Q Consensus 107 ~~~ 109 (593)
...
T Consensus 82 ~~~ 84 (111)
T 1whx_A 82 PIG 84 (111)
T ss_dssp ETT
T ss_pred CCC
Confidence 764
No 296
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=3.4e-16 Score=137.25 Aligned_cols=81 Identities=17% Similarity=0.243 Sum_probs=74.6
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||+++|+++|+++|+.|| |++|+|+.+.+|+++|||||+|.+.++|.+|+ .+|+..|+|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 3567899999999999999999999999 77999999988999999999999999999999 799999999999999887
Q ss_pred chH
Q 007673 389 RKE 391 (593)
Q Consensus 389 ~~~ 391 (593)
.++
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 297
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=124.36 Aligned_cols=81 Identities=28% Similarity=0.395 Sum_probs=74.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.||.|.+|+|+.+. +|.++|||||+|.+.++|.+|++ ++..++|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3456789999999999999999999999999999999985 58999999999999999999998 47899999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
+..+
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 9765
No 298
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.7e-15 Score=126.65 Aligned_cols=78 Identities=27% Similarity=0.466 Sum_probs=73.4
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||..+++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|||..++|+.|.|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 346789999999999999999999999999999999887 789999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 299
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.59 E-value=3.9e-15 Score=125.91 Aligned_cols=78 Identities=24% Similarity=0.399 Sum_probs=71.5
Q ss_pred CCCCccEEEEeCCCCC-CCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 25 NQFLTTSLYVGDLDFN-VTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~-~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
+....++|||+|||++ +|+++|+++|+.||.|.+|++ ++|||||+|.+.++|++|++.||+..|.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999998 4589999999999999999999999999999999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.|+....
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9987543
No 300
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=4.5e-15 Score=122.30 Aligned_cols=76 Identities=25% Similarity=0.441 Sum_probs=71.0
Q ss_pred ccccceeeeccCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~-~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||. ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 44678999999998 99999999999999999999983 78999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++.+
T Consensus 92 a~~~ 95 (97)
T 2xnq_A 92 SSSN 95 (97)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 301
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=124.96 Aligned_cols=78 Identities=28% Similarity=0.419 Sum_probs=72.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
..+.++|||+|||.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|.+|++.|||..++|++|.|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 346679999999999999999999999999999999865 789999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 87 ~~~ 89 (99)
T 2cpj_A 87 CHS 89 (99)
T ss_dssp SCC
T ss_pred CCC
Confidence 764
No 302
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=124.06 Aligned_cols=80 Identities=21% Similarity=0.417 Sum_probs=72.5
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
.....++|||+|||+++|+++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34568999999999999999999999999988666 3467899999999999999999999999999999999999
Q ss_pred eccCC
Q 007673 105 YSHRD 109 (593)
Q Consensus 105 ~s~~~ 109 (593)
|+...
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 98654
No 303
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=127.54 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=70.9
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
..++|||+|||.++++++|+++|++||.|.+|.++. ++|||||+|.+.++|.+|++.|||..++|++|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 467899999999999999999999999999998875 478999999999999999999999999999999999975
Q ss_pred h
Q 007673 390 K 390 (593)
Q Consensus 390 ~ 390 (593)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 304
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.1e-15 Score=122.47 Aligned_cols=82 Identities=26% Similarity=0.259 Sum_probs=73.5
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEE-EEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVR-VCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~-v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
......++|||+|||+++|+++|+++|+.||.|.+|+ +.+++.+ |.|||+|.+.++|.+|++.||+..|.|++|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3345578999999999999999999999999999994 8887655 4499999999999999999999999999999
Q ss_pred EeeccCC
Q 007673 103 IMYSHRD 109 (593)
Q Consensus 103 v~~s~~~ 109 (593)
|.|+...
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9998765
No 305
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=4e-15 Score=134.32 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=77.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||.++++++|+++|+.||.|.+|+|+.+. ++.++|||||+|.+.++|.+|++.||+..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 356899999999999999999999999999999999885 5889999999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
..+
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 306
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.3e-14 Score=120.22 Aligned_cols=80 Identities=23% Similarity=0.363 Sum_probs=72.3
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhcc--CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQV--GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~--G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
....+.++|||+|||+++|+++|+++|+.| |.|.+|++. +|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344568999999999999999999999999 999999875 4699999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 007673 102 RIMYSHRDPS 111 (593)
Q Consensus 102 ~v~~s~~~~~ 111 (593)
+|.|+.....
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999876543
No 307
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.2e-15 Score=127.26 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=74.2
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCC-eeEEEEe-eCC-CCCCccEEEEEeCCHHHHHHHHHHhC--CceecCeeeEE
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVM-RDP-SGISKGSGFVAFSTPEEASRALAEMN--GKMIVSKPLYV 384 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~-i~~v~i~-~~~-~g~~~g~afV~f~~~~~A~~A~~~~~--~~~~~~~~l~v 384 (593)
..++|||+|||.++++++|+++|+.||. |.+|.++ .+. +|.++|||||+|.+.++|.+|++.|| +..++|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5678999999999999999999999998 9999988 443 57899999999999999999999996 58999999999
Q ss_pred Eeccch
Q 007673 385 AVAQRK 390 (593)
Q Consensus 385 ~~~~~~ 390 (593)
.|++++
T Consensus 87 ~~a~~~ 92 (109)
T 2dis_A 87 DWAEPE 92 (109)
T ss_dssp EESCSS
T ss_pred EEcCCC
Confidence 999865
No 308
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=126.31 Aligned_cols=75 Identities=27% Similarity=0.553 Sum_probs=71.7
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
++|||+|||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|++.|||..++|+.|.|.+++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999887 7899999999999999999999999999999999999865
No 309
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=132.12 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=74.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
...++|||+|||..+++++|+++|++||.|.+++++.+ .+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999988 56889999999999999999999999999999999999985
No 310
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.58 E-value=4.5e-15 Score=120.05 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
...++|||+|||+++++++|+++|++| .|.+|++. +++|||||+|.+.++|++|++.||+..+.|++|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 357899999999999999999999999 99999983 67899999999999999999999999999999999998
Q ss_pred cCCC
Q 007673 107 HRDP 110 (593)
Q Consensus 107 ~~~~ 110 (593)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7764
No 311
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.8e-15 Score=120.48 Aligned_cols=76 Identities=20% Similarity=0.448 Sum_probs=70.7
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||.++++++|+++|+.||.|.+|+++++ ||||+|.+.++|.+|++.|||..+.|+.|.|.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS-------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 346789999999999999999999999999999999754 9999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 754
No 312
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-15 Score=126.21 Aligned_cols=77 Identities=22% Similarity=0.439 Sum_probs=69.6
Q ss_pred ccccceeee--ccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee-----cCe
Q 007673 308 KFQGLNLYI--KNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-----VSK 380 (593)
Q Consensus 308 ~~~~~~l~V--~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~-----~~~ 380 (593)
..+.++||| +||++++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.|||+.+ .|+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 345678999 669999999999999999999999987643 78999999999999999999999998 689
Q ss_pred eeEEEeccc
Q 007673 381 PLYVAVAQR 389 (593)
Q Consensus 381 ~l~v~~~~~ 389 (593)
+|+|.|++.
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999999874
No 313
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=7.2e-16 Score=161.92 Aligned_cols=151 Identities=17% Similarity=0.335 Sum_probs=111.2
Q ss_pred HHHHHhccCCeEEEEEEee----C-CCCCcccEE--EEEecCHHHHHHHHHhcCCcccCC---------------cEEEE
Q 007673 46 LYDLFSQVGQVLSVRVCRD----L-STRRSLGYG--YVNYANPADAARALDVLNFTPLNN---------------KSIRI 103 (593)
Q Consensus 46 L~~~F~~~G~V~~i~v~~d----~-~t~~s~g~A--fV~F~s~e~A~~Al~~ln~~~i~g---------------~~i~v 103 (593)
|.++|..+|+|..|..+.. . .+....|++ |+.|.+..++..++..++.....+ ..+.+
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 7899999999998854432 2 222233444 888887665544443222211111 11222
Q ss_pred eeccCCCCCCCCCCccEEEeCCCcccCHHHHHhhhccccceEEEEEeeC-CCCCceeEEEEEEcCHHHHHHHHHHhCCce
Q 007673 104 MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLNGML 182 (593)
Q Consensus 104 ~~s~~~~~~~~~~~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~-~~g~s~g~afV~F~~~e~A~~Al~~l~g~~ 182 (593)
......+........+|||+|||..+|+++|.++|+.||.|..|.|+.+ .++.++|||||+|.+.++|..||+.|||..
T Consensus 89 ~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 168 (437)
T 3pgw_S 89 WDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKK 168 (437)
T ss_pred cCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCE
Confidence 2222233334445679999999999999999999999999999999998 588999999999999999999999999999
Q ss_pred ecCeeEEeccccch
Q 007673 183 INDKQVFVGHFLRK 196 (593)
Q Consensus 183 ~~g~~l~v~~~~~~ 196 (593)
|.|+.|.|.++...
T Consensus 169 i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 169 IDGRRVLVDVERGR 182 (437)
T ss_pred ECCEEEEEEEeCCC
Confidence 99999999987654
No 314
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=3.2e-15 Score=125.42 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=71.4
Q ss_pred cEEEEeCC----CCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecC----HHH----HHHHHH--hcCCcc
Q 007673 30 TSLYVGDL----DFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN----PAD----AARALD--VLNFTP 95 (593)
Q Consensus 30 ~sL~V~nL----p~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s----~e~----A~~Al~--~ln~~~ 95 (593)
+.|||+|| |+.++|++|+++|+.||.|.++++..|+.|++|+|||||+|.+ +++ |.+|+. .+|+..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 444 899988 789999
Q ss_pred cCCcEEEEeecc
Q 007673 96 LNNKSIRIMYSH 107 (593)
Q Consensus 96 i~g~~i~v~~s~ 107 (593)
|.|+.|+|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999998643
No 315
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.58 E-value=1.1e-15 Score=131.35 Aligned_cols=82 Identities=23% Similarity=0.302 Sum_probs=74.7
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCee--EEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTIT--SCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~--~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
...++|||+|||+++|+++|+++|+.| .|. +|+|+.|.+|+++|||||+|.+.++|.+|++ +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 356789999999999999999999999 677 8999999889999999999999999999998 478999999999999
Q ss_pred ccchHH
Q 007673 387 AQRKEE 392 (593)
Q Consensus 387 ~~~~~~ 392 (593)
+.+++.
T Consensus 118 a~~~e~ 123 (126)
T 2hgm_A 118 SSQEEV 123 (126)
T ss_dssp ECHHHH
T ss_pred CCHHHh
Confidence 876653
No 316
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.58 E-value=1.3e-14 Score=129.18 Aligned_cols=81 Identities=26% Similarity=0.294 Sum_probs=72.2
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC--cEEEE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN--KSIRI 103 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g--~~i~v 103 (593)
+....+|||+||++++||++|+++|++||.|.+|++..+ +++|||||+|.+.++|++|++.||+..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 334577999999999999999999999999999999754 356899999999999999999999999965 99999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.|+....
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9997653
No 317
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.7e-15 Score=122.95 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=71.3
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|+.||.|. ++++.+ .++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3567999999999999999999999999997 666653 678999999999999999999999999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
++
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 318
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=5.8e-15 Score=119.95 Aligned_cols=76 Identities=24% Similarity=0.500 Sum_probs=70.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|||.++++++|+++|++||.|.+|+++++ ||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD-------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS-------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC-------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 346679999999999999999999999999999999754 9999999999999999999999999999999999
Q ss_pred cch
Q 007673 388 QRK 390 (593)
Q Consensus 388 ~~~ 390 (593)
+.+
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 319
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=119.35 Aligned_cols=79 Identities=19% Similarity=0.238 Sum_probs=70.7
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEee
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY 105 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~ 105 (593)
....++|||+|||+++|+++|+++|+.||.|.+| ..++.+++ ||||+|.+.++|.+|++ ||+..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3457899999999999999999999999999987 56666655 99999999999999999 999999999999998
Q ss_pred ccCCC
Q 007673 106 SHRDP 110 (593)
Q Consensus 106 s~~~~ 110 (593)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86543
No 320
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=2.9e-15 Score=123.29 Aligned_cols=77 Identities=25% Similarity=0.398 Sum_probs=70.5
Q ss_pred ccccceeeeccCCC-CCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGD-SIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~-~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
..+.++|||+|||. .+++++|+++|++||.|.+|++. +|||||+|.+.++|.+|++.|||..+.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999998 99999999999999999999984 67999999999999999999999999999999999
Q ss_pred ccchH
Q 007673 387 AQRKE 391 (593)
Q Consensus 387 ~~~~~ 391 (593)
++.+.
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97653
No 321
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.2e-15 Score=125.55 Aligned_cols=82 Identities=22% Similarity=0.494 Sum_probs=76.4
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|+.||.|.+|+++.+.+|.++|||||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 35678999999999999999999999999999999999889999999999999999999999 9999999999999998
Q ss_pred chHH
Q 007673 389 RKEE 392 (593)
Q Consensus 389 ~~~~ 392 (593)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 7643
No 322
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.56 E-value=5.6e-15 Score=135.78 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=78.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..+++|||+|||..+++++|+++|+.||.|.+|.|+.+.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|+.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 54
No 323
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.56 E-value=1.8e-15 Score=118.39 Aligned_cols=74 Identities=20% Similarity=0.392 Sum_probs=69.3
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
+|||+|||.++++++|+++|++||.|.+++++.+. +|.++|||||+|.+.++|.+|++. ++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999998874 588999999999999999999994 899999999999875
No 324
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6e-15 Score=123.61 Aligned_cols=81 Identities=21% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCCccEEEE--eCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc-----CC
Q 007673 26 QFLTTSLYV--GDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL-----NN 98 (593)
Q Consensus 26 ~~~~~sL~V--~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i-----~g 98 (593)
..++++||| |||++++||++|+++|++||.|.+|.+.. .+|||||+|.+.++|++|++.||+..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345789999 77999999999999999999999998864 358999999999999999999999987 68
Q ss_pred cEEEEeeccCCCCC
Q 007673 99 KSIRIMYSHRDPSI 112 (593)
Q Consensus 99 ~~i~v~~s~~~~~~ 112 (593)
++|.|.|+..-+..
T Consensus 96 ~~l~v~~a~~~p~~ 109 (114)
T 2cq2_A 96 ITLYLNFVEKVQWS 109 (114)
T ss_dssp EECEEEEESCCCCS
T ss_pred cEEEEEecccCccc
Confidence 89999888765543
No 325
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=2.9e-16 Score=134.28 Aligned_cols=85 Identities=25% Similarity=0.495 Sum_probs=77.9
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeE--------EEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITS--------CKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~--------v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 379 (593)
.+.++|||+|||.++++++|+++|+.||.|.+ |+|+.+ .+|.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35678999999999999999999999999999 888888 568899999999999999999999999999999
Q ss_pred eeeEEEeccchHHH
Q 007673 380 KPLYVAVAQRKEER 393 (593)
Q Consensus 380 ~~l~v~~~~~~~~r 393 (593)
++|.|.+++++..+
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999876443
No 326
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=3.3e-15 Score=123.01 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=71.5
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||..+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 356799999999999999999999999988766 4567899999999999999999999999999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 90 ~~ 91 (96)
T 1fjc_A 90 EK 91 (96)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 327
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.55 E-value=6.2e-15 Score=125.59 Aligned_cols=75 Identities=24% Similarity=0.279 Sum_probs=66.4
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE-----E
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS-----I 101 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~-----i 101 (593)
...++|||+|||+++|+++|+++|+.||.|.+|+++.| |||||+|.+.++|++||+.||+..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 45789999999999999999999999999999999876 89999999999999999999999999998 6
Q ss_pred EEeeccC
Q 007673 102 RIMYSHR 108 (593)
Q Consensus 102 ~v~~s~~ 108 (593)
+|.....
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6665543
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=8.4e-15 Score=118.40 Aligned_cols=75 Identities=20% Similarity=0.341 Sum_probs=69.7
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
..++|||+|||.++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|++.|||..++|++|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 35689999999999999999999999 99999884 5799999999999999999999999999999999999865
Q ss_pred h
Q 007673 390 K 390 (593)
Q Consensus 390 ~ 390 (593)
+
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 329
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5e-15 Score=126.34 Aligned_cols=79 Identities=29% Similarity=0.463 Sum_probs=72.1
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCe----eEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEE
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTI----TSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i----~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v 384 (593)
...++|||+|||.++++++|+++|+.||.| ..+++. +|.++|||||+|.+.++|.+|++.|||..++|++|.|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 356899999999999999999999999998 455554 6889999999999999999999999999999999999
Q ss_pred Eeccch
Q 007673 385 AVAQRK 390 (593)
Q Consensus 385 ~~~~~~ 390 (593)
.|++.+
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 999865
No 330
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.55 E-value=2e-15 Score=134.18 Aligned_cols=84 Identities=21% Similarity=0.239 Sum_probs=73.0
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEE-----EeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRV-----CRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v-----~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
..++++|||+|||+++|+++|+++|+.||.|.++.+ ++...+++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 456789999999999999999999999999877411 222246889999999999999999999999999999999
Q ss_pred EEEeeccCC
Q 007673 101 IRIMYSHRD 109 (593)
Q Consensus 101 i~v~~s~~~ 109 (593)
|+|.|+...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998654
No 331
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=1.1e-14 Score=121.49 Aligned_cols=76 Identities=26% Similarity=0.524 Sum_probs=70.5
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|||.++++++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|||..|.|+.|.|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 3567899999999999999999999999999999874 499999999999999999999999999999999998
Q ss_pred chH
Q 007673 389 RKE 391 (593)
Q Consensus 389 ~~~ 391 (593)
.+.
T Consensus 82 ~~~ 84 (103)
T 2dgu_A 82 PPD 84 (103)
T ss_dssp CCC
T ss_pred CCc
Confidence 653
No 332
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.55 E-value=1.5e-14 Score=117.03 Aligned_cols=77 Identities=16% Similarity=0.398 Sum_probs=63.7
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--cCeeeEEEe
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI--VSKPLYVAV 386 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~--~~~~l~v~~ 386 (593)
...++|||+|||+++|+++|+++|++||.|.+|+|+.+ ++|||||+|.+.++|.+ +++..+ .|+.|.|.+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 46679999999999999999999999999999999886 78999999999999983 566654 599999999
Q ss_pred ccchHHH
Q 007673 387 AQRKEER 393 (593)
Q Consensus 387 ~~~~~~r 393 (593)
+.++..+
T Consensus 81 a~~k~~~ 87 (89)
T 3d2w_A 81 AEPKHNK 87 (89)
T ss_dssp CC-----
T ss_pred cCCCCcC
Confidence 9876543
No 333
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.55 E-value=1.6e-14 Score=123.85 Aligned_cols=75 Identities=20% Similarity=0.363 Sum_probs=69.3
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceecC--eeeEEEecc
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 388 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~~~~~~~~~--~~l~v~~~~ 388 (593)
..|||+||++.+|+++|+++|++||.|.+|+++.+ ++|| |||+|.+.++|.+|++.|||..|.| +.|+|.|++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 35889999999999999999999999999998875 3677 9999999999999999999999988 999999998
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 105 ~~ 106 (130)
T 3zzy_A 105 LT 106 (130)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 334
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.3e-14 Score=120.96 Aligned_cols=80 Identities=30% Similarity=0.438 Sum_probs=72.4
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
....++|||+|||.++++++|+++|+.|+ +++++.+ .+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44678999999999999999999999874 6777776 4788999999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++++
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9864
No 335
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.54 E-value=1.1e-14 Score=129.70 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=70.6
Q ss_pred cceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC--eeeEEEecc
Q 007673 311 GLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 388 (593)
Q Consensus 311 ~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~--~~l~v~~~~ 388 (593)
..+|||+||++.+|+++|+++|++||.|.+|+|+.+. ++|||||+|.+.++|.+|++.|||..|.| +.|+|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 4569999999999999999999999999999997653 57899999999999999999999999965 999999998
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.54 E-value=9.6e-15 Score=118.17 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=63.0
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEe
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIM 104 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~ 104 (593)
...+..+|||+|||+++||++|+++|++||.|.+|+++++ ++|||||+|.+.++|+++... ...++|+.|+|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~--~~~~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE--DLIIKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC--EEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC--CcccCCEEEEEE
Confidence 3456789999999999999999999999999999999874 779999999999999853321 234579999999
Q ss_pred eccCC
Q 007673 105 YSHRD 109 (593)
Q Consensus 105 ~s~~~ 109 (593)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 88653
No 337
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7e-15 Score=120.25 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=68.6
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCC-eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCC-ceecCeeeEEEe
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGT-ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNG-KMIVSKPLYVAV 386 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~-i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~-~~~~~~~l~v~~ 386 (593)
...++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|.|.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 35678999999999999999999999999 6666553 478999999999999999999999 999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++.+
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9764
No 338
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=3.6e-15 Score=132.53 Aligned_cols=84 Identities=26% Similarity=0.470 Sum_probs=73.6
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEE------EEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCee
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSC------KVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v------~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 381 (593)
..+.++|||+|||.++|+++|+++|+.||.|.++ .+....+|.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4467899999999999999999999999998774 1222246889999999999999999999999999999999
Q ss_pred eEEEeccchH
Q 007673 382 LYVAVAQRKE 391 (593)
Q Consensus 382 l~v~~~~~~~ 391 (593)
|.|.|++...
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997643
No 339
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.54 E-value=3.5e-14 Score=118.32 Aligned_cols=83 Identities=16% Similarity=0.260 Sum_probs=73.2
Q ss_pred cccceeeeccCCC-----CCCHHHHHHHhhcCCCeeEEEEeeCC--CCCCccEEEEEeCCHHHHHHHHHHhCCceecCee
Q 007673 309 FQGLNLYIKNLGD-----SIDDEKLKELFSEFGTITSCKVMRDP--SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP 381 (593)
Q Consensus 309 ~~~~~l~V~nl~~-----~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 381 (593)
.++++|+|+|+-. +-++++|+++|++||.|.+|+|+.+. .+.++|||||+|.+.++|.+|++.|||+.++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567899999963 23689999999999999999999875 3678999999999999999999999999999999
Q ss_pred eEEEeccchH
Q 007673 382 LYVAVAQRKE 391 (593)
Q Consensus 382 l~v~~~~~~~ 391 (593)
|.|.++....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999998643
No 340
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-15 Score=127.18 Aligned_cols=80 Identities=23% Similarity=0.387 Sum_probs=72.3
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRD-PSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|+.||.|.+ .++.+ .+|.++|||||+|.+.++|.+|++ |||..+.|+.|.|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 5679999999999999999999999999888 44444 568899999999999999999998 99999999999999997
Q ss_pred chH
Q 007673 389 RKE 391 (593)
Q Consensus 389 ~~~ 391 (593)
.+.
T Consensus 94 ~~~ 96 (101)
T 1fj7_A 94 GRD 96 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 341
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=118.34 Aligned_cols=75 Identities=29% Similarity=0.469 Sum_probs=69.3
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
...++|||+|+ ++++++|+++|++||.|.+|+|. .++|||||+|.+.++|.+|++.|||..++|++|.|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 46689999996 89999999999999999999984 468999999999999999999999999999999999997
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 342
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=1.7e-14 Score=116.34 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=67.6
Q ss_pred CCCccEEEEeCCCCCCCHHHHHHHHhcc----C-------CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc
Q 007673 26 QFLTTSLYVGDLDFNVTDSQLYDLFSQV----G-------QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~te~~L~~~F~~~----G-------~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~ 94 (593)
+.+.++|||+|||+++|+++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .||+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4568999999999999999999999999 8 9999998754 589999999999999999 89999
Q ss_pred ccCCcEEEEee
Q 007673 95 PLNNKSIRIMY 105 (593)
Q Consensus 95 ~i~g~~i~v~~ 105 (593)
.+.|+.|+|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999864
No 343
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=122.36 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=68.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCC---CCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST---RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t---~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
..+++|||+|||+++|+++|+++|++||.|. +.++.+..+ ++++|||||+|.+.++|++|++.++ .++|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4578999999999999999999999999999 888888877 6999999999999999999999884 367777777
Q ss_pred eec
Q 007673 104 MYS 106 (593)
Q Consensus 104 ~~s 106 (593)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 644
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=114.92 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=63.5
Q ss_pred ceeeeccCCCCCCHHH----HHHHhhcC-CCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 312 LNLYIKNLGDSIDDEK----LKELFSEF-GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~----l~~~F~~~-G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
+.|||+|||+++++++ |+++|++| |.|.+| .| |+|||.|.+.++|.+|++.|+|..+.||+|+|+|
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3499999999999988 55899999 599998 12 8999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
|+.+
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9864
No 345
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.3e-14 Score=121.83 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=71.1
Q ss_pred ceeeeccC----CCCCCHHHHHHHhhcCCCeeEEEEeeCC-CCCCccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 007673 312 LNLYIKNL----GDSIDDEKLKELFSEFGTITSCKVMRDP-SGISKGSGFVAFST----PEE----ASRALA--EMNGKM 376 (593)
Q Consensus 312 ~~l~V~nl----~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~----~~~----A~~A~~--~~~~~~ 376 (593)
+.|||+|| ++.+++++|+++|+.||+|.+++++.|+ +|.++|||||+|.+ +++ |.+|+. .+||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999995 78999999999996 433 889988 789999
Q ss_pred ecCeeeEEEeccch
Q 007673 377 IVSKPLYVAVAQRK 390 (593)
Q Consensus 377 ~~~~~l~v~~~~~~ 390 (593)
|+|++|+|.+.+.-
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999998754
No 346
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.53 E-value=1.4e-14 Score=122.51 Aligned_cols=73 Identities=26% Similarity=0.560 Sum_probs=69.2
Q ss_pred ccceeeeccCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~-~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.+ +++++|+++|++||.|.+|++ ++|||||+|.+.++|.+|++.|||..++|+.|.|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4579999999999 999999999999999999998 47899999999999999999999999999999999997
Q ss_pred c
Q 007673 389 R 389 (593)
Q Consensus 389 ~ 389 (593)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 4
No 347
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.53 E-value=7.2e-14 Score=119.86 Aligned_cols=79 Identities=25% Similarity=0.313 Sum_probs=70.8
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccE-EEEEecCHHHHHHHHHhcCCcccCC--cEEEE
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY-GYVNYANPADAARALDVLNFTPLNN--KSIRI 103 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~-AfV~F~s~e~A~~Al~~ln~~~i~g--~~i~v 103 (593)
..--.|||+||++.+||++|+++|++||.|.+|++.++. +|+ |||+|.+.++|.+|++.||+..|.| +.|+|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 345677899999999999999999999999999998752 467 9999999999999999999999988 89999
Q ss_pred eeccCCC
Q 007673 104 MYSHRDP 110 (593)
Q Consensus 104 ~~s~~~~ 110 (593)
.|++...
T Consensus 101 ~~ak~~~ 107 (130)
T 3zzy_A 101 DFSKLTS 107 (130)
T ss_dssp EECSCSS
T ss_pred EecCCCc
Confidence 9997653
No 348
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.53 E-value=1e-13 Score=118.43 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=67.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccE-EEEEecCHHHHHHHHHhcCCcccCC--cEEEEe
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGY-GYVNYANPADAARALDVLNFTPLNN--KSIRIM 104 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~-AfV~F~s~e~A~~Al~~ln~~~i~g--~~i~v~ 104 (593)
....|||+||++.+|+++|+++|++||.|.+|++... + || |||+|.+.++|.+|++.||+..|.| +.|+|.
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~ 97 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----N-GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIE 97 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----S-SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----C-CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEE
Confidence 3455789999999999999999999999999999752 2 85 9999999999999999999999987 699999
Q ss_pred eccCC
Q 007673 105 YSHRD 109 (593)
Q Consensus 105 ~s~~~ 109 (593)
|+...
T Consensus 98 ~Ak~~ 102 (124)
T 2e5i_A 98 YARPT 102 (124)
T ss_dssp CCSCS
T ss_pred EecCC
Confidence 98754
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.52 E-value=4e-14 Score=117.92 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=73.9
Q ss_pred CCCccEEEEeCCCC-----CCCHHHHHHHHhccCCeEEEEEEeeCCC-CCcccEEEEEecCHHHHHHHHHhcCCcccCCc
Q 007673 26 QFLTTSLYVGDLDF-----NVTDSQLYDLFSQVGQVLSVRVCRDLST-RRSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (593)
Q Consensus 26 ~~~~~sL~V~nLp~-----~~te~~L~~~F~~~G~V~~i~v~~d~~t-~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~ 99 (593)
+.++++|+|+||-. +-++++|++.|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.||+..|.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34688999999962 2378999999999999999999998764 68999999999999999999999999999999
Q ss_pred EEEEeeccC
Q 007673 100 SIRIMYSHR 108 (593)
Q Consensus 100 ~i~v~~s~~ 108 (593)
.|+|.|+..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998753
No 350
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.7e-14 Score=117.40 Aligned_cols=75 Identities=29% Similarity=0.473 Sum_probs=69.7
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcC--CCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEe
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEF--GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAV 386 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~--G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~ 386 (593)
...++|||+|||..+++++|+++|+.| |.|.++++. +|||||+|.+.++|.+|++.|||..|+|+.|.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 456799999999999999999999999 999999875 56999999999999999999999999999999999
Q ss_pred ccch
Q 007673 387 AQRK 390 (593)
Q Consensus 387 ~~~~ 390 (593)
++++
T Consensus 86 a~~~ 89 (99)
T 2cpd_A 86 AKPV 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9764
No 351
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.2e-14 Score=117.43 Aligned_cols=78 Identities=19% Similarity=0.281 Sum_probs=67.5
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
..+++|||+|||+++||++|+++|+.||.|.+|++.++ ++|||||+|.+.++|++|+.. ...+.|+.|+|.|+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 45799999999999999999999999999999999865 679999999999999876542 34569999999998
Q ss_pred cCCCC
Q 007673 107 HRDPS 111 (593)
Q Consensus 107 ~~~~~ 111 (593)
.....
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 352
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=5e-14 Score=120.41 Aligned_cols=74 Identities=24% Similarity=0.276 Sum_probs=67.4
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceecC--eeeEEEecc
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGS-GFVAFSTPEEASRALAEMNGKMIVS--KPLYVAVAQ 388 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~~~~~~~~~--~~l~v~~~~ 388 (593)
..|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34789999999999999999999999999999763 276 9999999999999999999999987 699999998
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
.+
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 353
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.51 E-value=4.4e-14 Score=121.24 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=71.8
Q ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 24 GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 24 ~~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
.....+++|||+|| ++|+++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.||+..|.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34557899999996 79999999999999999999985 57799999999999999999999999999999999
Q ss_pred eeccCCCC
Q 007673 104 MYSHRDPS 111 (593)
Q Consensus 104 ~~s~~~~~ 111 (593)
.|+...+.
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99976543
No 354
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.9e-14 Score=117.28 Aligned_cols=78 Identities=27% Similarity=0.391 Sum_probs=70.8
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEE-EeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCK-VMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~-i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
..++|||+|||.++++++|+++|+.||.|.+++ ++.+.. .|.|||+|.+.++|.+|++.|||..++|++|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 467899999999999999999999999999995 777643 2349999999999999999999999999999999998
Q ss_pred ch
Q 007673 389 RK 390 (593)
Q Consensus 389 ~~ 390 (593)
++
T Consensus 91 ~~ 92 (96)
T 2e44_A 91 DE 92 (96)
T ss_dssp CC
T ss_pred cc
Confidence 76
No 355
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.50 E-value=2.9e-14 Score=121.39 Aligned_cols=74 Identities=24% Similarity=0.333 Sum_probs=66.1
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCee-----eEE
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKP-----LYV 384 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~-----l~v 384 (593)
..++|||+|||.++++++|+++|+.||.|.+|.|+.+ |||||+|.+.++|.+|++.|||..|+|+. |.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 4578999999999999999999999999999999876 79999999999999999999999999998 666
Q ss_pred Eeccc
Q 007673 385 AVAQR 389 (593)
Q Consensus 385 ~~~~~ 389 (593)
..+.+
T Consensus 89 ~~~~~ 93 (115)
T 3beg_B 89 KVDGP 93 (115)
T ss_dssp EECC-
T ss_pred ccCCC
Confidence 65543
No 356
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.1e-14 Score=115.91 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=66.9
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
..++|||+|||.++++++|+++|+.||.|.+| +....+|. ||||+|.+.++|.+|++ |||..|+|+.|.|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 34689999999999999999999999999998 43333443 99999999999999999 999999999999997764
Q ss_pred h
Q 007673 390 K 390 (593)
Q Consensus 390 ~ 390 (593)
+
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 357
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.49 E-value=6.2e-14 Score=130.79 Aligned_cols=80 Identities=16% Similarity=0.299 Sum_probs=73.3
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeecc
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH 107 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s~ 107 (593)
..++|||+|||+++|+++|+++|+.||.|.+|+++++.. ++++|||||+|.+.++|.+|++.++ ..++|++|+|.|..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 358999999999999999999999999999999999864 8899999999999999999998665 58999999999876
Q ss_pred CC
Q 007673 108 RD 109 (593)
Q Consensus 108 ~~ 109 (593)
..
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 358
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=9.1e-14 Score=119.25 Aligned_cols=77 Identities=29% Similarity=0.452 Sum_probs=70.5
Q ss_pred ccccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEec
Q 007673 308 KFQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVA 387 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~ 387 (593)
....++|||+|+ ++++++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|||..++|+.|.|.|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 346789999996 69999999999999999999986 46899999999999999999999999999999999999
Q ss_pred cchH
Q 007673 388 QRKE 391 (593)
Q Consensus 388 ~~~~ 391 (593)
+.+.
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8653
No 359
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.47 E-value=1.2e-13 Score=111.25 Aligned_cols=70 Identities=21% Similarity=0.485 Sum_probs=65.9
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcC----C-------CeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceec
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEF----G-------TITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV 378 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~----G-------~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~ 378 (593)
..++|||+|||.++++++|+++|+.| | .|.++++..+ +|||||+|.+.++|.+|+ .|||..++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 45789999999999999999999999 8 8999998765 889999999999999999 99999999
Q ss_pred CeeeEEE
Q 007673 379 SKPLYVA 385 (593)
Q Consensus 379 ~~~l~v~ 385 (593)
|+.|.|+
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 9999987
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=1.4e-13 Score=128.38 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=73.9
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
..++|||+|||.++++++|+++|+.||.|.+|+|.++.+|.++|||||+|.+.++|.+|+..++ ..++|+.|.|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 3568999999999999999999999999999999999889999999999999999999998665 599999999999875
Q ss_pred h
Q 007673 390 K 390 (593)
Q Consensus 390 ~ 390 (593)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 361
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=1.3e-13 Score=131.43 Aligned_cols=80 Identities=24% Similarity=0.452 Sum_probs=71.6
Q ss_pred CCCccEEEEeCCCCCC---------CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc
Q 007673 26 QFLTTSLYVGDLDFNV---------TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL 96 (593)
Q Consensus 26 ~~~~~sL~V~nLp~~~---------te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i 96 (593)
....++||||||+.++ +|++|+++|++||.|.+|+|++ ++|||||+|.+.++|+.|++.|++..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578999999999998 7999999999999999999985 468999999999999999999999999
Q ss_pred ------------CCcEEEEeeccCCCC
Q 007673 97 ------------NNKSIRIMYSHRDPS 111 (593)
Q Consensus 97 ------------~g~~i~v~~s~~~~~ 111 (593)
.|+.|+|.|+..++.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC----
T ss_pred eccccccccccCCCCEEEEEEccCCCC
Confidence 899999999987754
No 362
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=1.1e-13 Score=131.92 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=70.7
Q ss_pred cccceeeeccCCCCC---------CHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--
Q 007673 309 FQGLNLYIKNLGDSI---------DDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI-- 377 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~---------~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~-- 377 (593)
...++|||+||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|..|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 356799999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred ----------cCeeeEEEeccchHHH
Q 007673 378 ----------VSKPLYVAVAQRKEER 393 (593)
Q Consensus 378 ----------~~~~l~v~~~~~~~~r 393 (593)
.|+.|.|.||..+...
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-----
T ss_pred cccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999876543
No 363
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.3e-14 Score=113.25 Aligned_cols=75 Identities=17% Similarity=0.357 Sum_probs=64.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccc
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQR 389 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~ 389 (593)
..++|||+|||.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|.+|+.. ...+.|++|.|.++.+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4578999999999999999999999999999999876 689999999999999764321 3345899999998876
Q ss_pred h
Q 007673 390 K 390 (593)
Q Consensus 390 ~ 390 (593)
+
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=2.8e-13 Score=112.88 Aligned_cols=82 Identities=17% Similarity=0.311 Sum_probs=71.4
Q ss_pred ccceeeeccC--CCCCC--------HHHHHHHhhcCCCeeEEEEeeCCCC---CCccEEEEEeCCHHHHHHHHHHhCCce
Q 007673 310 QGLNLYIKNL--GDSID--------DEKLKELFSEFGTITSCKVMRDPSG---ISKGSGFVAFSTPEEASRALAEMNGKM 376 (593)
Q Consensus 310 ~~~~l~V~nl--~~~~~--------~~~l~~~F~~~G~i~~v~i~~~~~g---~~~g~afV~f~~~~~A~~A~~~~~~~~ 376 (593)
++++|.|+|+ +.++. +++|++.|++||.|.+|+|+++..+ .++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568899998 33443 3799999999999999999988643 679999999999999999999999999
Q ss_pred ecCeeeEEEeccchH
Q 007673 377 IVSKPLYVAVAQRKE 391 (593)
Q Consensus 377 ~~~~~l~v~~~~~~~ 391 (593)
++||.|.|.++....
T Consensus 84 f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANRVVVTKYCDPDS 98 (105)
T ss_dssp ETTEECEEEEECHHH
T ss_pred eCCCEEEEEEeCHHH
Confidence 999999999997654
No 365
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=116.44 Aligned_cols=77 Identities=14% Similarity=0.229 Sum_probs=66.7
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC----CCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS----GISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~----g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
..++|||+|||.++++++|+++|++||.|. +.++.+.. |+++|||||+|.+.++|.+|++.|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 467899999999999999999999999999 77776643 7899999999999999999999984 3777777776
Q ss_pred eccc
Q 007673 386 VAQR 389 (593)
Q Consensus 386 ~~~~ 389 (593)
.+..
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 5543
No 366
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=8.5e-13 Score=111.74 Aligned_cols=86 Identities=13% Similarity=0.131 Sum_probs=72.6
Q ss_pred CCCCCCccEEEEeCCCCCCC-----------HHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc
Q 007673 23 SGNQFLTTSLYVGDLDFNVT-----------DSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~~t-----------e~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l 91 (593)
...+.++++|+|.||-...+ +++|+++|++||.|.+|.| .|+ .++|||||+|.+.++|.+|++.|
T Consensus 9 ~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~l 84 (112)
T 2dit_A 9 PSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTL 84 (112)
T ss_dssp CCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHS
T ss_pred CCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHc
Confidence 34566799999999944332 6899999999999999976 443 37899999999999999999999
Q ss_pred CCcccCCcEEEEeeccCCCCC
Q 007673 92 NFTPLNNKSIRIMYSHRDPSI 112 (593)
Q Consensus 92 n~~~i~g~~i~v~~s~~~~~~ 112 (593)
|+..|.|+.|+|.|+......
T Consensus 85 ng~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 85 DGRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTCEETTEECEEEECCSCCCS
T ss_pred CCCEECCcEEEEEEeCCCCCc
Confidence 999999999999998765443
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=8.2e-14 Score=115.97 Aligned_cols=72 Identities=18% Similarity=0.431 Sum_probs=62.5
Q ss_pred eccCCCCCCHHHHHHHh------------hcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeE
Q 007673 316 IKNLGDSIDDEKLKELF------------SEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLY 383 (593)
Q Consensus 316 V~nl~~~~~~~~l~~~F------------~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~ 383 (593)
+.||+..+++++|+++| ++||.|.+|+|+++..|+++|||||+|.+.++|.+|++.|||+.++||.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 34555556666555555 999999999999998889999999999999999999999999999999999
Q ss_pred EEec
Q 007673 384 VAVA 387 (593)
Q Consensus 384 v~~~ 387 (593)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.40 E-value=5.3e-13 Score=113.35 Aligned_cols=82 Identities=17% Similarity=0.330 Sum_probs=71.3
Q ss_pred ccceeeeccCC--CCC---CHHHHHHHhhcCCCeeEEEEeeCCC-----CCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 007673 310 QGLNLYIKNLG--DSI---DDEKLKELFSEFGTITSCKVMRDPS-----GISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (593)
Q Consensus 310 ~~~~l~V~nl~--~~~---~~~~l~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 379 (593)
++++|+|+|+- .++ -++||++.|++||.|.+|+|+.+.. +.++|++||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67789999983 223 2589999999999999999998743 4678999999999999999999999999999
Q ss_pred eeeEEEeccchH
Q 007673 380 KPLYVAVAQRKE 391 (593)
Q Consensus 380 ~~l~v~~~~~~~ 391 (593)
|.|.|.|+....
T Consensus 99 R~i~v~~~~~~~ 110 (118)
T 3ue2_A 99 RKVVAEVYDQER 110 (118)
T ss_dssp EECEEEEECHHH
T ss_pred cEEEEEEcChHh
Confidence 999999997643
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=7.5e-13 Score=112.39 Aligned_cols=80 Identities=10% Similarity=0.162 Sum_probs=71.5
Q ss_pred CccEEEEeCCC--CCC---CHHHHHHHHhccCCeEEEEEEeeCC----CCCcccEEEEEecCHHHHHHHHHhcCCcccCC
Q 007673 28 LTTSLYVGDLD--FNV---TDSQLYDLFSQVGQVLSVRVCRDLS----TRRSLGYGYVNYANPADAARALDVLNFTPLNN 98 (593)
Q Consensus 28 ~~~sL~V~nLp--~~~---te~~L~~~F~~~G~V~~i~v~~d~~----t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g 98 (593)
++++|+|.|+- .++ -+++|++.|++||.|.+|+|+++.. +++++|+|||+|.+.++|.+|++.||+..|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 58899999993 222 4788999999999999999999875 45788999999999999999999999999999
Q ss_pred cEEEEeecc
Q 007673 99 KSIRIMYSH 107 (593)
Q Consensus 99 ~~i~v~~s~ 107 (593)
|.|+|.|..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 370
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-12 Score=110.34 Aligned_cols=80 Identities=24% Similarity=0.323 Sum_probs=69.0
Q ss_pred ccccceeeeccCCCCCC-----------HHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 007673 308 KFQGLNLYIKNLGDSID-----------DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKM 376 (593)
Q Consensus 308 ~~~~~~l~V~nl~~~~~-----------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~ 376 (593)
....++|+|+||-...+ +++|+++|++||.|.+|.| .+. .++|||||+|.+.++|.+|++.|||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34577899999944332 5899999999999999966 443 379999999999999999999999999
Q ss_pred ecCeeeEEEeccch
Q 007673 377 IVSKPLYVAVAQRK 390 (593)
Q Consensus 377 ~~~~~l~v~~~~~~ 390 (593)
++|++|.|.++..+
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999999764
No 371
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=8.5e-13 Score=109.92 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=72.5
Q ss_pred CCccEEEEeCC--CCCCC--------HHHHHHHHhccCCeEEEEEEeeCCC--CCcccEEEEEecCHHHHHHHHHhcCCc
Q 007673 27 FLTTSLYVGDL--DFNVT--------DSQLYDLFSQVGQVLSVRVCRDLST--RRSLGYGYVNYANPADAARALDVLNFT 94 (593)
Q Consensus 27 ~~~~sL~V~nL--p~~~t--------e~~L~~~F~~~G~V~~i~v~~d~~t--~~s~g~AfV~F~s~e~A~~Al~~ln~~ 94 (593)
.+++.|.|.|+ |.++. +++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46899999998 44553 3689999999999999999998765 368899999999999999999999999
Q ss_pred ccCCcEEEEeeccC
Q 007673 95 PLNNKSIRIMYSHR 108 (593)
Q Consensus 95 ~i~g~~i~v~~s~~ 108 (593)
.|.||.|+|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998753
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=2.8e-13 Score=112.74 Aligned_cols=72 Identities=26% Similarity=0.409 Sum_probs=64.3
Q ss_pred EeCCCCCCCHHHHHHHH------------hccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 34 VGDLDFNVTDSQLYDLF------------SQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 34 V~nLp~~~te~~L~~~F------------~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
+.+|++.+++++|.+.| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|++.||+..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777888777666 9999999999999865 6899999999999999999999999999999999
Q ss_pred EEeec
Q 007673 102 RIMYS 106 (593)
Q Consensus 102 ~v~~s 106 (593)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-11 Score=101.52 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=66.4
Q ss_pred CccEEEEeCCC-------CCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcE
Q 007673 28 LTTSLYVGDLD-------FNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKS 100 (593)
Q Consensus 28 ~~~sL~V~nLp-------~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~ 100 (593)
...+|.|.-.. .+++|++|+++|++||.|.+|+|++ +++|||||+|.+.++|++|++.++ .+.|++
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~ 81 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEV--GLVDNP 81 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCC--BCSSSB
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcC--CCCCCe
Confidence 36788888765 4589999999999999999999983 688999999999999999999754 478999
Q ss_pred EEEeeccCCCC
Q 007673 101 IRIMYSHRDPS 111 (593)
Q Consensus 101 i~v~~s~~~~~ 111 (593)
|+|.|+...+.
T Consensus 82 l~V~~a~~~~~ 92 (100)
T 2d9o_A 82 LKISWLEGQPQ 92 (100)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999876654
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.26 E-value=2.4e-11 Score=102.30 Aligned_cols=80 Identities=14% Similarity=0.189 Sum_probs=67.7
Q ss_pred ccceeeeccCCCCCC----------HHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC
Q 007673 310 QGLNLYIKNLGDSID----------DEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS 379 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~----------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 379 (593)
++++|.++|+=..-. ++||++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||+.++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456788888832211 36899999999999999997663 58999999999999999999999999999
Q ss_pred eeeEEEeccchHH
Q 007673 380 KPLYVAVAQRKEE 392 (593)
Q Consensus 380 ~~l~v~~~~~~~~ 392 (593)
|.|+|.|+....-
T Consensus 83 R~i~v~~~~~~~y 95 (114)
T 3s6e_A 83 KMITAAYVPLPTY 95 (114)
T ss_dssp EECEEEEECHHHH
T ss_pred EEEEEEEEcHHHH
Confidence 9999999976543
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=100.96 Aligned_cols=64 Identities=20% Similarity=0.367 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccch
Q 007673 321 DSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRK 390 (593)
Q Consensus 321 ~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~ 390 (593)
..+++++|+++|++||.|.+|+|+ ++++|||||+|.+.++|.+|++.+++ +.|++|.|.|++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 568999999999999999999988 36899999999999999999998555 67999999998754
No 376
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.22 E-value=1.8e-11 Score=123.03 Aligned_cols=76 Identities=25% Similarity=0.484 Sum_probs=66.5
Q ss_pred ccccceeeecc--CCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceec---Ce--
Q 007673 308 KFQGLNLYIKN--LGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIV---SK-- 380 (593)
Q Consensus 308 ~~~~~~l~V~n--l~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~---~~-- 380 (593)
..++.+|||+| |+..+|+++|+++|++||.|.+|.+.. +||||||+|.+.++|.+|++.|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~ 89 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 89 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCce
Confidence 34677999999 578999999999999999999987754 4899999999999999999999999883 34
Q ss_pred eeEEEecc
Q 007673 381 PLYVAVAQ 388 (593)
Q Consensus 381 ~l~v~~~~ 388 (593)
.|+|.|++
T Consensus 90 ~ly~~~~~ 97 (345)
T 3tht_A 90 TLYLNFVE 97 (345)
T ss_dssp ECEEEECS
T ss_pred EEEEEEee
Confidence 78888885
No 377
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.19 E-value=4.6e-11 Score=100.59 Aligned_cols=79 Identities=18% Similarity=0.200 Sum_probs=67.4
Q ss_pred CCCCccEEEEeCCCCCC----------CHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCc
Q 007673 25 NQFLTTSLYVGDLDFNV----------TDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFT 94 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~----------te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~ 94 (593)
++-++++|.+.|+=..- -+++|++.|++||.|.+|.|+++. ++|+|||+|.+.++|.+|++.||+.
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 34568899999984221 235789999999999999997763 5799999999999999999999999
Q ss_pred ccCCcEEEEeecc
Q 007673 95 PLNNKSIRIMYSH 107 (593)
Q Consensus 95 ~i~g~~i~v~~s~ 107 (593)
.|.||.|+|.|+.
T Consensus 79 ~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAGKMITAAYVP 91 (114)
T ss_dssp EETTEECEEEEEC
T ss_pred EECCEEEEEEEEc
Confidence 9999999999875
No 378
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=2.4e-11 Score=122.06 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=64.8
Q ss_pred CCCCccEEEEeC--CCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCccc---CCc
Q 007673 25 NQFLTTSLYVGD--LDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPL---NNK 99 (593)
Q Consensus 25 ~~~~~~sL~V~n--Lp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i---~g~ 99 (593)
.+.++++||||| |+.++||++|+++|++||.|.+|++.+ ++|||||+|.+.++|++|++.||+..+ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456789999999 578999999999999999999987743 468999999999999999999999877 244
Q ss_pred --EEEEeec
Q 007673 100 --SIRIMYS 106 (593)
Q Consensus 100 --~i~v~~s 106 (593)
++.+.|.
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 4566554
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.02 E-value=5.9e-10 Score=87.59 Aligned_cols=73 Identities=21% Similarity=0.388 Sum_probs=63.0
Q ss_pred cccceeeeccCC----CCCCH----HHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCe
Q 007673 309 FQGLNLYIKNLG----DSIDD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSK 380 (593)
Q Consensus 309 ~~~~~l~V~nl~----~~~~~----~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 380 (593)
++..||+|.-.+ ..+-+ .+|.+.|++||+|..++++.+ .+||+|.+.++|.+|++ |||..++||
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCe
Confidence 455678887766 33444 689999999999999999987 39999999999999998 999999999
Q ss_pred eeEEEeccc
Q 007673 381 PLYVAVAQR 389 (593)
Q Consensus 381 ~l~v~~~~~ 389 (593)
.|+|+++.+
T Consensus 77 ~LkV~lkt~ 85 (91)
T 2dnr_A 77 TITIALKSP 85 (91)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 999999875
No 380
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=9.2e-10 Score=92.61 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=74.0
Q ss_pred hhcccccceeeeccCCCC-CCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCC-HHHHHHHHHHhC--CceecCe
Q 007673 305 TVDKFQGLNLYIKNLGDS-IDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFST-PEEASRALAEMN--GKMIVSK 380 (593)
Q Consensus 305 ~~~~~~~~~l~V~nl~~~-~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~-~~~A~~A~~~~~--~~~~~~~ 380 (593)
...-..++.|||+||++. +++++|+++|+.||.|..|.+..+.. .|||.|.+ .++|..|+..+| +..|.|.
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 344567899999999999 99999999999999999999988744 69999999 899999999994 7789999
Q ss_pred eeEEEeccchHHH
Q 007673 381 PLYVAVAQRKEER 393 (593)
Q Consensus 381 ~l~v~~~~~~~~r 393 (593)
.+.+++....+++
T Consensus 87 ~~~~evL~GeeE~ 99 (121)
T 1owx_A 87 EVTWEVLEGEVEK 99 (121)
T ss_dssp SEEEEECCHHHHH
T ss_pred EEEEEECCCHHHH
Confidence 9999988866544
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=3.3e-09 Score=89.22 Aligned_cols=76 Identities=17% Similarity=0.118 Sum_probs=66.2
Q ss_pred CCCCccEEEEeCCCCC-CCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecC-HHHHHHHHHhcC--CcccCCcE
Q 007673 25 NQFLTTSLYVGDLDFN-VTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYAN-PADAARALDVLN--FTPLNNKS 100 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~-~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s-~e~A~~Al~~ln--~~~i~g~~ 100 (593)
.=...+.|||+||+++ +++++|+++|+.||.|.+|.+.++.. .|||.|.+ .++|..|+..+| +..|+|..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3456789999999999 99999999999999999999998765 49999999 899999999985 66788888
Q ss_pred EEEeec
Q 007673 101 IRIMYS 106 (593)
Q Consensus 101 i~v~~s 106 (593)
+++...
T Consensus 88 ~~~evL 93 (121)
T 1owx_A 88 VTWEVL 93 (121)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777543
No 382
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=5.2e-09 Score=82.25 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=63.8
Q ss_pred CCCccEEEEeCCC----CCCCH----HHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccC
Q 007673 26 QFLTTSLYVGDLD----FNVTD----SQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLN 97 (593)
Q Consensus 26 ~~~~~sL~V~nLp----~~~te----~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~ 97 (593)
.++..||.|.-.+ .++-. .+|.+.|+.||.|.++++..|+ +||+|.+.++|.+|++ ||+..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 3567899998877 23333 5688899999999999999873 8999999999999999 9999999
Q ss_pred CcEEEEeeccCC
Q 007673 98 NKSIRIMYSHRD 109 (593)
Q Consensus 98 g~~i~v~~s~~~ 109 (593)
||.|+|.+...+
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999987653
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=1.3e-08 Score=97.07 Aligned_cols=70 Identities=17% Similarity=0.305 Sum_probs=62.5
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEeeCC-----CCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEeccchH
Q 007673 322 SIDDEKLKELFSEFGTITSCKVMRDP-----SGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQRKE 391 (593)
Q Consensus 322 ~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~~~~ 391 (593)
+-.+++|++.|++||.|.++.|.++. .|.++|++||+|.+.++|.+|++.|||+.++||.|.+.+.....
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 34568999999999999999998653 34899999999999999999999999999999999999997644
No 384
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=6.5e-09 Score=82.03 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=63.4
Q ss_pred cccccceeeeccCCCC-----CCH----HHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 007673 307 DKFQGLNLYIKNLGDS-----IDD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMI 377 (593)
Q Consensus 307 ~~~~~~~l~V~nl~~~-----~~~----~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~ 377 (593)
..++..||+|.-++.. +-+ .+|.+.|+.||+|..+++..+ -+||+|.+.++|.+|++ |||..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee
Confidence 3456678999888632 333 679999999999999999988 39999999999999998 999999
Q ss_pred cCeeeEEEecc
Q 007673 378 VSKPLYVAVAQ 388 (593)
Q Consensus 378 ~~~~l~v~~~~ 388 (593)
+||.|+|++..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999764
No 385
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.70 E-value=2.8e-08 Score=94.74 Aligned_cols=80 Identities=10% Similarity=0.149 Sum_probs=67.1
Q ss_pred ccEEEEeCCC-----CCCCHHHHHHHHhccCCeEEEEEEeeCCCC----CcccEEEEEecCHHHHHHHHHhcCCcccCCc
Q 007673 29 TTSLYVGDLD-----FNVTDSQLYDLFSQVGQVLSVRVCRDLSTR----RSLGYGYVNYANPADAARALDVLNFTPLNNK 99 (593)
Q Consensus 29 ~~sL~V~nLp-----~~~te~~L~~~F~~~G~V~~i~v~~d~~t~----~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~ 99 (593)
++.+.+.++- .+-.+++|++.|++||.|.++.|+++..++ +++|++||+|.+.++|.+|++.||+..+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4455555542 234567899999999999999999776544 8999999999999999999999999999999
Q ss_pred EEEEeeccC
Q 007673 100 SIRIMYSHR 108 (593)
Q Consensus 100 ~i~v~~s~~ 108 (593)
.|++.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999998753
No 386
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=2.6e-08 Score=78.56 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=63.7
Q ss_pred CCCCCCccEEEEeCCCCC-----C-CH---HHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCC
Q 007673 23 SGNQFLTTSLYVGDLDFN-----V-TD---SQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNF 93 (593)
Q Consensus 23 ~~~~~~~~sL~V~nLp~~-----~-te---~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~ 93 (593)
+.-.++..||.|.-++.+ + .+ .+|.+.|+.||.|..+|+..|+ +||+|.+.++|.+||+ ||+
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC
Confidence 344567899999988743 2 32 4588899999999999999884 8999999999999999 999
Q ss_pred cccCCcEEEEeec
Q 007673 94 TPLNNKSIRIMYS 106 (593)
Q Consensus 94 ~~i~g~~i~v~~s 106 (593)
..+.||.|+|.+.
T Consensus 80 ~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 80 MKVKGRAVKISGP 92 (95)
T ss_dssp SEETTEEEEEECC
T ss_pred eeeCCeEEEEecc
Confidence 9999999999763
No 387
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=5.4e-07 Score=72.32 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=67.4
Q ss_pred ccceeeeccCCCCCCHHHHHHHhhcC-----CCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEE
Q 007673 310 QGLNLYIKNLGDSIDDEKLKELFSEF-----GTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYV 384 (593)
Q Consensus 310 ~~~~l~V~nl~~~~~~~~l~~~F~~~-----G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v 384 (593)
..++|-+-|||+.+++..|+.+.++| |.|+.+.+..|..| |+|+|.+...|.+|.-.++|..|.|+.|++
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-----Aivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-----AIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-----EEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-----eEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 35689999999999999999999999 99999999999554 999999999999999999999999999998
Q ss_pred Eec
Q 007673 385 AVA 387 (593)
Q Consensus 385 ~~~ 387 (593)
.-.
T Consensus 95 gTv 97 (117)
T 2l9w_A 95 GTI 97 (117)
T ss_dssp ECH
T ss_pred cCH
Confidence 743
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=7.4e-05 Score=59.64 Aligned_cols=88 Identities=22% Similarity=0.237 Sum_probs=71.8
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhcc-----CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEE
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQV-----GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIR 102 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~-----G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~ 102 (593)
-.++|.|.|||++++++.|.-+|+.- |.|.+|.... +-|+|.|.+.+.|++.|+. ....|+|.++.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 46799999999999999999999872 6999998754 3689999999999999994 35678899999
Q ss_pred EeeccCCCCCCCCCCccEEEeCCCcccC
Q 007673 103 IMYSHRDPSIRKSGTGNIFIKNLDKSID 130 (593)
Q Consensus 103 v~~s~~~~~~~~~~~~~lfV~nLp~~~t 130 (593)
|..... ....+|++.+|++.++
T Consensus 78 V~P~~~------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPP------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCC------CCCCCCCCCSCCCCCC
T ss_pred EEcCCC------CCcceEeeecCCCCCC
Confidence 975432 2345799999998764
No 389
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=6.6e-05 Score=60.36 Aligned_cols=72 Identities=19% Similarity=0.204 Sum_probs=66.1
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhcc-----CCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEE
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQV-----GQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSI 101 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~-----G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i 101 (593)
...++|-+-+||-.++.+.|+.+.+++ |.+..|.+..|. |=|+|+|.+..+|-+|.-.|++..|.|+.|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 447899999999999999999999999 999999988774 359999999999999998999999999999
Q ss_pred EEe
Q 007673 102 RIM 104 (593)
Q Consensus 102 ~v~ 104 (593)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 985
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=4.5e-05 Score=61.22 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=63.0
Q ss_pred ccEEEEeCCCCCC-CH----HHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEE
Q 007673 29 TTSLYVGDLDFNV-TD----SQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI 103 (593)
Q Consensus 29 ~~sL~V~nLp~~~-te----~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v 103 (593)
-++|+|.||+.++ .. +.++++|..|+++.+....+ |..=..|+|.+.++|.+|...|++..|.|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk------SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK------SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET------TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC------cceEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3589999999876 32 46789999999998887765 3335689999999999999999999999999999
Q ss_pred eeccC
Q 007673 104 MYSHR 108 (593)
Q Consensus 104 ~~s~~ 108 (593)
.+.+.
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99874
No 391
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.58 E-value=0.00013 Score=58.50 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=63.0
Q ss_pred cceeeeccCCCCC-CH----HHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEE
Q 007673 311 GLNLYIKNLGDSI-DD----EKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVA 385 (593)
Q Consensus 311 ~~~l~V~nl~~~~-~~----~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~ 385 (593)
.++|+|.||+.++ .. +.++++|..|+.+.+...++. -.-..|.|.+.++|.+|-..||+..++|+.++|-
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4579999998765 32 567899999999988877765 3368999999999999999999999999999999
Q ss_pred ecc
Q 007673 386 VAQ 388 (593)
Q Consensus 386 ~~~ 388 (593)
|++
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 997
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.43 E-value=0.00044 Score=54.63 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=57.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCC--cccEEEEEecCHHHHHHHHHhcCCcccC
Q 007673 30 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR--SLGYGYVNYANPADAARALDVLNFTPLN 97 (593)
Q Consensus 30 ~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~--s~g~AfV~F~s~e~A~~Al~~ln~~~i~ 97 (593)
+.|.|++||+.+||+++.+.++.+..+.....+..+.+.+ ...-|||+|.+.+++....+.+++..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5799999999999999999999998888888877664432 2357999999999999999999877663
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.29 E-value=0.0012 Score=52.09 Aligned_cols=55 Identities=25% Similarity=0.406 Sum_probs=46.3
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN 92 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln 92 (593)
...++| ++|+++...||.++|+.||.| .|+.+.| | .|||.|.+++.|..|+..++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD--T-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD--T-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET--T-----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC--C-----eEEEEecCHHHHHHHHHhcc
Confidence 345666 999999999999999999965 6666666 2 69999999999999999763
No 394
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.17 E-value=0.0028 Score=50.63 Aligned_cols=89 Identities=16% Similarity=0.204 Sum_probs=71.0
Q ss_pred CCCccEEEeCCCcccCHHHHHhhhcc-----ccceEEEEEeeCCCCCceeEEEEEEcCHHHHHHHHHHhCCceecCeeEE
Q 007673 115 SGTGNIFIKNLDKSIDHKALHDTFSS-----FGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLNGMLINDKQVF 189 (593)
Q Consensus 115 ~~~~~lfV~nLp~~~t~~~L~~~f~~-----~G~i~~~~i~~~~~g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g~~l~ 189 (593)
+...+|.|.|||..++++.|.-.|+. -|.|.+++... +-|+|+|.+.+.|.+.+++ ..+.+++..+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 34568999999999999999999976 35788877743 5789999999999999954 36778888888
Q ss_pred eccccchhhhHHHHhhccccceeccCCCCCCC
Q 007673 190 VGHFLRKQERETVAIKTKFNNVFVKNLDESTT 221 (593)
Q Consensus 190 v~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t 221 (593)
|.++..+ ...++++.+|++.++
T Consensus 78 V~P~~~~----------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPR----------APARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCC----------CCCCCCCCSCCCCCC
T ss_pred EEcCCCC----------CcceEeeecCCCCCC
Confidence 8775543 346799999998765
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.84 E-value=0.0012 Score=52.27 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=45.4
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN 92 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln 92 (593)
.++| ++|+++...||.++|+.||.| .|+.+.| -.|||.|.+++.|..|+..++
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4556 999999999999999999955 6777766 269999999999999999764
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.73 E-value=0.0056 Score=50.58 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=58.1
Q ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCC-cEEEE
Q 007673 25 NQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNN-KSIRI 103 (593)
Q Consensus 25 ~~~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g-~~i~v 103 (593)
.....+.|.|-+.|++. -..|.+.|++||.|.+.... ....+-.|.|.+..+|++||. .|+..|.| --|=|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 34557899999999885 77788999999999988762 123489999999999999999 68888875 44455
Q ss_pred eec
Q 007673 104 MYS 106 (593)
Q Consensus 104 ~~s 106 (593)
.+.
T Consensus 92 ~p~ 94 (119)
T 1wwh_A 92 KPC 94 (119)
T ss_dssp EEC
T ss_pred EEC
Confidence 443
No 397
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.62 E-value=0.0035 Score=49.38 Aligned_cols=53 Identities=30% Similarity=0.470 Sum_probs=45.5
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 373 (593)
.++| ++|.++.-.||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+..++
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4666 999999999999999999954 57777774 59999999999999999763
No 398
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.49 E-value=0.01 Score=46.69 Aligned_cols=76 Identities=14% Similarity=0.250 Sum_probs=59.5
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCC--C-CCccEEEEEeCCHHHHHHHHHHhCCceecCe-----eeE
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPS--G-ISKGSGFVAFSTPEEASRALAEMNGKMIVSK-----PLY 383 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~--g-~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~-----~l~ 383 (593)
++|.|++||..+|++++.+.++....+.....+.... + ..-..|+|.|.+.+++....+.++|+.+.+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4799999999999999999999998876666555431 1 2345799999999999999999999988432 334
Q ss_pred EEec
Q 007673 384 VAVA 387 (593)
Q Consensus 384 v~~~ 387 (593)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5555
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.41 E-value=0.0026 Score=50.49 Aligned_cols=70 Identities=14% Similarity=0.068 Sum_probs=52.0
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCC--cccEEEEEecCHHHHHHHHHhcCCcccC
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRR--SLGYGYVNYANPADAARALDVLNFTPLN 97 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~--s~g~AfV~F~s~e~A~~Al~~ln~~~i~ 97 (593)
++-.|.|+.||+.+||+++.+.++.+=.+.....+..+.+.+ ...-|||+|.+.++.....+..++..|.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 466899999999999999988888764444333333332221 2246899999999999999999887763
No 400
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.29 E-value=0.0036 Score=49.46 Aligned_cols=53 Identities=28% Similarity=0.420 Sum_probs=46.0
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 373 (593)
.++| ++|.++.-.||.++|+.|| -..|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 4666 9999999999999999999 4467777774 59999999999999999774
No 401
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.28 E-value=0.014 Score=48.25 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=59.2
Q ss_pred cccceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecC-eeeEEEec
Q 007673 309 FQGLNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVS-KPLYVAVA 387 (593)
Q Consensus 309 ~~~~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~-~~l~v~~~ 387 (593)
...+.|.|-+.+... ...|..+|++||+|.+..... ...+-.|.|.+..+|.+|+. .||..++| -.|-|...
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 345689999999885 567888999999999887621 24589999999999999998 69999975 55666654
Q ss_pred cchH
Q 007673 388 QRKE 391 (593)
Q Consensus 388 ~~~~ 391 (593)
..+.
T Consensus 95 ~d~~ 98 (119)
T 1wwh_A 95 IDKN 98 (119)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 4443
No 402
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.56 E-value=0.006 Score=63.27 Aligned_cols=57 Identities=9% Similarity=0.186 Sum_probs=44.5
Q ss_pred CccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHh
Q 007673 28 LTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDV 90 (593)
Q Consensus 28 ~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ 90 (593)
..+||+|. .|..+++.+|.+.|++||+|.++...+++. -||.|+|.+.+++..+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHhc
Confidence 37899997 799999999999999999999998876543 5999999999999988774
No 403
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.75 E-value=0.1 Score=43.59 Aligned_cols=77 Identities=23% Similarity=0.343 Sum_probs=56.0
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEE-EEeeCC-------------CC-CCccEEEEEeCCHHHHHHHHHHhCCce
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSC-KVMRDP-------------SG-ISKGSGFVAFSTPEEASRALAEMNGKM 376 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v-~i~~~~-------------~g-~~~g~afV~f~~~~~A~~A~~~~~~~~ 376 (593)
+.|.|-+.|.+.+ ..+-+.|++||.|.+- ...++. -+ ....+.-|+|++..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4577888866654 5577889999998762 211100 00 124678999999999999998 89999
Q ss_pred ecCeeeEEEeccch
Q 007673 377 IVSKPLYVAVAQRK 390 (593)
Q Consensus 377 ~~~~~l~v~~~~~~ 390 (593)
|+|.-|-|......
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888877543
No 404
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.67 E-value=0.097 Score=43.78 Aligned_cols=76 Identities=21% Similarity=0.253 Sum_probs=53.4
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEE-EEEEee------------CCCC-CcccEEEEEecCHHHHHHHHHhcCCc
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLS-VRVCRD------------LSTR-RSLGYGYVNYANPADAARALDVLNFT 94 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~-i~v~~d------------~~t~-~s~g~AfV~F~s~e~A~~Al~~ln~~ 94 (593)
...|.|-+.|++ ....+.+.|++||.|.+ +...++ +... ...++..|.|.+..+|.+||. .|+.
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 457788888654 56678889999999866 211110 0000 124688999999999999999 6999
Q ss_pred ccCCcEEEEeec
Q 007673 95 PLNNKSIRIMYS 106 (593)
Q Consensus 95 ~i~g~~i~v~~s 106 (593)
.|.|.-|=|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999976666554
No 405
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.61 E-value=0.13 Score=40.78 Aligned_cols=69 Identities=12% Similarity=0.212 Sum_probs=50.0
Q ss_pred CccEEEeCCCcccCHHHHHhhhccccceEEEEEeeCC--C-CCceeEEEEEEcCHHHHHHHHHHhCCceecC
Q 007673 117 TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG--S-GQSKGFGFVQFENKESAQNAIDKLNGMLIND 185 (593)
Q Consensus 117 ~~~lfV~nLp~~~t~~~L~~~f~~~G~i~~~~i~~~~--~-g~s~g~afV~F~~~e~A~~Al~~l~g~~~~g 185 (593)
+-.|.|+.||+++|++++.+.++.+-.+.-....... . ...-.-|||.|.+.++.....+..+|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4579999999999999999998876554322222211 1 1122358999999999999999999876643
No 406
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.62 E-value=0.065 Score=55.55 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=40.8
Q ss_pred ceeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHH
Q 007673 312 LNLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAE 371 (593)
Q Consensus 312 ~~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~ 371 (593)
++|+|. .+..+++.+|.++|++||.|.++....+ . .-|+.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S---SEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C---CeEEEEEeCCHHHHHHHHhc
Confidence 479997 7999999999999999999999876654 2 25999999999999877653
No 407
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.48 E-value=2.3 Score=44.87 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=45.9
Q ss_pred ccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcC
Q 007673 29 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLN 92 (593)
Q Consensus 29 ~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln 92 (593)
...++|+ +|..+...+|.++|+.||.| +|+.+.| -.|||.|.+.++|..++.+++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4577777 99999999999999999954 6655544 269999999999999999875
No 408
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=75.92 E-value=5.6 Score=41.86 Aligned_cols=53 Identities=28% Similarity=0.431 Sum_probs=43.9
Q ss_pred eeeeccCCCCCCHHHHHHHhhcCCCeeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 007673 313 NLYIKNLGDSIDDEKLKELFSEFGTITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMN 373 (593)
Q Consensus 313 ~l~V~nl~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 373 (593)
.++|+ ++..|...+|.++|+.||. .+|+.+.+ ..|||.|.+.+.|..+++.++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 45555 8889999999999999995 46666555 269999999999999999885
No 409
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=43.24 E-value=21 Score=26.27 Aligned_cols=60 Identities=17% Similarity=0.240 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHhhcCCC-----eeEEEEeeCCCCCCccEEEEEeCCHHHHHHHHHHhCCceecCeeeEEEecc
Q 007673 321 DSIDDEKLKELFSEFGT-----ITSCKVMRDPSGISKGSGFVAFSTPEEASRALAEMNGKMIVSKPLYVAVAQ 388 (593)
Q Consensus 321 ~~~~~~~l~~~F~~~G~-----i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~l~v~~~~ 388 (593)
+.+...+|..++..-+. |-.+++..+ |.||+-.. +.|..+++.+++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 34566677777765443 455666554 88999866 66889999999999999999998764
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=42.50 E-value=1.1e+02 Score=23.20 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=46.3
Q ss_pred CCccEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc
Q 007673 27 FLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (593)
Q Consensus 27 ~~~~sL~V~nLp~~~te~~L~~~F~~~G~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l 91 (593)
...+-|.+-|+|..+-..++.-.....|---.+.... |.|.|.|.+.++-..|+..|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 3567899999999999999888888888655554432 68999999999999999875
No 411
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=35.71 E-value=67 Score=23.43 Aligned_cols=58 Identities=14% Similarity=0.326 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhcc-C----CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhcCCcccCCcEEEEeec
Q 007673 40 NVTDSQLYDLFSQV-G----QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS 106 (593)
Q Consensus 40 ~~te~~L~~~F~~~-G----~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~ln~~~i~g~~i~v~~s 106 (593)
.+...+|..++..- | .|-.|++..+ |.||+-... .|.++++.++...++|+.++|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 45666677766543 3 4777887553 778887665 477888889989999999988654
No 412
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=28.83 E-value=31 Score=26.15 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=32.6
Q ss_pred ccchhhh-hcCCCHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007673 531 AAKVTGM-LLEMDQTEVLHLLESPEALKAKVAEAMEVLR 568 (593)
Q Consensus 531 a~kitgm-ll~~~~~~~~~~~~~~~~l~~~v~~a~~~l~ 568 (593)
-.+|||+ |+|+..+++-+|..+.-.++-++--.+.-|+
T Consensus 39 ~ndItG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~Lr 77 (85)
T 1uqv_A 39 ENDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINKMR 77 (85)
T ss_dssp HSCCCGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred HcCCchhhHHHcCHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3589998 5679999999999999999999888888876
No 413
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.44 E-value=1.5e+02 Score=22.54 Aligned_cols=58 Identities=14% Similarity=0.032 Sum_probs=43.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHHhc
Q 007673 31 SLYVGDLDFNVTDSQLYDLFSQ-VG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVL 91 (593)
Q Consensus 31 sL~V~nLp~~~te~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~~l 91 (593)
.-|+-.....++..++.+.++. || .|.+|..+.-+.. ..-|||.+....+|......+
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~---~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRG---EKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTS---CEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCC---ceEEEEEcCCCCcHHHHHHhh
Confidence 3466677889999999998887 55 7888888875432 235999999998888765543
No 414
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=25.28 E-value=36 Score=22.99 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=19.3
Q ss_pred HHHHHhhCChHHHHHHHHHHHH
Q 007673 544 TEVLHLLESPEALKAKVAEAME 565 (593)
Q Consensus 544 ~~~~~~~~~~~~l~~~v~~a~~ 565 (593)
+-|++||++.+.+-.+|.||+-
T Consensus 18 qaLihLIqnD~~Fl~~IHeAYl 39 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVYL 39 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHHH
Confidence 4588999999999999999973
No 415
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=25.03 E-value=29 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.287 Sum_probs=22.9
Q ss_pred hhhhhcCCC--HHHHHHhhCChHHHHHHHHHHH
Q 007673 534 VTGMLLEMD--QTEVLHLLESPEALKAKVAEAM 564 (593)
Q Consensus 534 itgmll~~~--~~~~~~~~~~~~~l~~~v~~a~ 564 (593)
|++-.|.-. .+-+++||++.+.+-.+|.||+
T Consensus 4 ~~~~~Ltk~Ql~qal~hLiknD~~Fl~~iHeAY 36 (46)
T 2wx4_A 4 MADLLLNSTQFVQAFTYLIQNDKEFANKLHKAY 36 (46)
T ss_dssp GGGGSTTSHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 344444433 3458899999999999999996
No 416
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=20.50 E-value=1.8e+02 Score=22.09 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=41.8
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-cC-CeEEEEEEeeCCCCCcccEEEEEecCHHHHHHHHH
Q 007673 32 LYVGDLDFNVTDSQLYDLFSQ-VG-QVLSVRVCRDLSTRRSLGYGYVNYANPADAARALD 89 (593)
Q Consensus 32 L~V~nLp~~~te~~L~~~F~~-~G-~V~~i~v~~d~~t~~s~g~AfV~F~s~e~A~~Al~ 89 (593)
-|+-..+.+++..+|++.++. || .|.+|..+.-+. ...-|||.+....+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~---~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD---GEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---SSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC---CceEEEEEECCCCcHHHHHH
Confidence 466677899999999998876 56 888998887553 22369999988887766544
Done!