Query 007674
Match_columns 593
No_of_seqs 260 out of 628
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 13:49:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02305 lipoxygenase 100.0 1E-162 2E-167 1363.4 47.2 510 68-581 82-622 (918)
2 PLN02264 lipoxygenase 100.0 9E-162 2E-166 1356.0 43.0 509 68-581 85-624 (919)
3 PLN02337 lipoxygenase 100.0 1E-160 2E-165 1350.9 45.1 510 55-581 19-568 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 1E-113 3E-118 964.0 12.3 363 214-581 1-388 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 5.5E-39 1.2E-43 298.3 14.4 130 70-205 3-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.3 1.8E-11 3.9E-16 107.8 10.1 83 103-193 20-105 (105)
7 PF01477 PLAT: PLAT/LH2 domain 98.9 7.2E-09 1.6E-13 91.4 7.8 65 139-203 45-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.7 1.8E-07 3.9E-12 83.7 11.1 64 139-202 48-115 (116)
9 cd02899 PLAT_SR Scavenger rece 98.3 4.7E-06 1E-10 75.6 9.1 78 103-193 20-99 (109)
10 cd01753 PLAT_LOX PLAT domain o 97.9 7.1E-05 1.5E-09 68.0 8.9 84 103-194 20-106 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.8 0.00023 4.9E-09 64.9 11.9 86 102-195 19-109 (120)
12 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.6 0.00016 3.4E-09 66.3 7.3 55 140-195 42-100 (114)
13 cd01752 PLAT_polycystin PLAT/L 97.6 0.00058 1.3E-08 62.3 10.6 86 103-195 20-109 (120)
14 cd01754 PLAT_plant_stress PLAT 97.3 0.00082 1.8E-08 62.8 7.2 55 139-195 58-119 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 51.0 80 0.0017 29.0 7.9 50 139-188 46-105 (120)
16 KOG2080 Uncharacterized conser 51.0 13 0.00027 44.7 3.1 53 141-194 1013-1069(1295)
17 COG3101 Uncharacterized protei 38.0 15 0.00033 35.5 1.1 37 522-562 29-65 (180)
18 PF03802 CitX: Apo-citrate lya 28.9 64 0.0014 31.7 3.7 50 211-277 87-136 (170)
19 PF04315 DUF462: Protein of un 27.4 28 0.0006 34.3 0.9 38 521-562 18-55 (164)
20 PF11248 DUF3046: Protein of u 24.1 30 0.00064 29.0 0.4 24 440-464 21-44 (63)
21 TIGR03124 ctirate_citX holo-AC 22.9 75 0.0016 31.2 2.9 53 208-277 82-134 (165)
No 1
>PLN02305 lipoxygenase
Probab=100.00 E-value=1.1e-162 Score=1363.42 Aligned_cols=510 Identities=46% Similarity=0.840 Sum_probs=473.1
Q ss_pred eeEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCcc---eeccccccccCCCCCCceEEEEE
Q 007674 68 IKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK---STIQDYARKIGADGDGNMQYESE 144 (593)
Q Consensus 68 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~G~~v~lqLvS~~~~~~~g~~~---~~l~~w~~~~~~~~~~~~~y~~~ 144 (593)
.+++++++++++++++++.+ .++++|+++|++|++|+|||||++++|+||+|| ++|++|+++ ....++++.|+++
T Consensus 82 ~~i~~~v~~~~~~~~~~~~~-~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~~~~~~~~~~ 159 (918)
T PLN02305 82 IDVRAVITIRKKIKEKITEK-FEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSNDPHIVEYAAD 159 (918)
T ss_pred CeEEEEEEEEeecccchhhc-ccchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCCCCceEEEEE
Confidence 67888888888777655553 258899999999999999999999999999555 899999987 3432667899999
Q ss_pred EEecCCCCceeEEEEEecCCCceeeeeEEEeecCCCcEEEeeCCccccCCCCCCceEEeeccccccCCCcHHHHHHHHHH
Q 007674 145 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE 224 (593)
Q Consensus 145 f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~~~i~FpCnsWV~~~~~~~~~RifF~nk~yLP~~tp~~L~~~Re~E 224 (593)
|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+|||||||+++|+.+||||+||+|||++||++|++|||+|
T Consensus 160 f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~e 239 (918)
T PLN02305 160 FTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRRED 239 (918)
T ss_pred EeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCCCCCCCCccccCCCCCCCCCCCcccccC---CCccCCC
Q 007674 225 LTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRD 301 (593)
Q Consensus 225 L~~lRG~G~Gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~~~~dp~~esr~~---~~yvPrD 301 (593)
|++|||||+||||+||||||||||||||+||++++++||||||++|||||||||||+|+++||.+|+|.. .+|||||
T Consensus 240 L~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrD 319 (918)
T PLN02305 240 LLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRD 319 (918)
T ss_pred HHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999669999999999999999999999954 4799999
Q ss_pred CCcchhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCcCCCCccccchhhhhh--hHHHHhhhccC
Q 007674 302 EAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLL--PRLVKAIEDTG 379 (593)
Q Consensus 302 e~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~Di~~LY~~g~~l~~~~~~~~~~~~~--~~~~~~~~~~~ 379 (593)
|+|+++|+++|+++++|+++|.++|.|+++++.+..+|++|+||++||++|+++|......+.+..+ +.++++ .+++
T Consensus 320 E~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~p~~~~~~~~i-~~~~ 398 (918)
T PLN02305 320 ETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQV-LSVS 398 (918)
T ss_pred CCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhcCCchHHHHHHh-hhcc
Confidence 9999999999999999999999999999999888999999999999999999998731112222113 345555 7789
Q ss_pred CccccccCccccccCcccccccHHHHHHHhhCCCcccccccccCCCCCCCCCCccCCCCCCCcHHHHHHhhCCcccHHHH
Q 007674 380 DNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEA 459 (593)
Q Consensus 380 ~~~lkfp~P~vi~~d~~~W~~DeeFgrQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~IT~e~ie~~L~g~~Tleea 459 (593)
+.+||||+|+||++|+++|++|+|||||+|||+||++|++|++||++|+|||++||+|+|+||+|||+..|+| +||+||
T Consensus 399 ~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~TleeA 477 (918)
T PLN02305 399 ERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MTVEKA 477 (918)
T ss_pred cccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-CcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HhcCcEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCCCCcCeEEeCCCCCCCChHHH
Q 007674 460 IKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWK 539 (593)
Q Consensus 460 l~~grLFilDy~d~~lp~l~~in~~~g~~~YAprtLffl~~dG~L~PIAIqL~~pp~~~~~~~~~VftPsd~~~~~~~W~ 539 (593)
|++|||||+||||++|||+.++|.+.++++|||+||||++++|+|+||||||+++|+.+++.+++||||++++++.|.|+
T Consensus 478 l~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~W~ 557 (918)
T PLN02305 478 IEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWIWK 557 (918)
T ss_pred HHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999998776667789999987777899999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHH-----------------------HhHHHHhhhhhhhhhhcc
Q 007674 540 LAKAHVLAHDAGYHQLVSHWYVQF-----------------------LLIHVVDLYGIKWLVKKK 581 (593)
Q Consensus 540 LAKa~v~~aD~~~HQlisH~LrTH-----------------------L~PH~~~Tl~IN~~AR~~ 581 (593)
||||||++||++|||+|+|||+|| |.|||++||+||++||++
T Consensus 558 LAK~~V~~aD~~~HQlisHlLrTHlv~EpfiIAT~RqLs~~HPI~kLL~PHfr~TL~INalAR~~ 622 (918)
T PLN02305 558 LAKAHVCSNDAGVHQLVNHWLRTHACMEPYIIATHRQLSAMHPIYKLLHPHMRYTLEINALARQS 622 (918)
T ss_pred HHHHHHHhccHHHHHHHHHHhhHHHHHHHHHHHHhccCCccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999996 679999999999999986
No 2
>PLN02264 lipoxygenase
Probab=100.00 E-value=9.3e-162 Score=1355.96 Aligned_cols=509 Identities=46% Similarity=0.839 Sum_probs=471.3
Q ss_pred eeEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCcc----eeccccccccCCCCCCceEEEE
Q 007674 68 IKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK----STIQDYARKIGADGDGNMQYES 143 (593)
Q Consensus 68 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~G~~v~lqLvS~~~~~~~g~~~----~~l~~w~~~~~~~~~~~~~y~~ 143 (593)
++++++++|+++++++++.. .++++|+++|++||+|+|||||+++||+||+|+ ++|++|+++ ....+++++|+|
T Consensus 85 ~~i~~~v~~~~~~~~~~~~~-~~~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l~~~~~~-~~~~~~~~~y~~ 162 (919)
T PLN02264 85 FKVRAVVTVRNKNKEDLKET-LVKHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVLKDWSKK-SNIKAERVHYTA 162 (919)
T ss_pred EEEEEEEEEEeccccchhhc-ccchhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchhcccccC-CCCCCCceEEEE
Confidence 67888888888777655543 258899999999999999999999999998443 999999987 454677789999
Q ss_pred EEEecCCCCceeEEEEEecCCCceeeeeEEEeecCCCcEEEeeCCccccCCCCCCceEEeeccccccCCCcHHHHHHHHH
Q 007674 144 EFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAE 223 (593)
Q Consensus 144 ~f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~~~i~FpCnsWV~~~~~~~~~RifF~nk~yLP~~tp~~L~~~Re~ 223 (593)
+|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+|||||||+++|+.+||||+||+|||++||++|++|||+
T Consensus 163 ~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~Nk~YLP~~tP~~l~~~Re~ 242 (919)
T PLN02264 163 EFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTNQPYLPSETPAGLRALREK 242 (919)
T ss_pred EEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecCCCcCcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCCCCCCCCccccCCCCCCCCCCCcccccC---CCccCC
Q 007674 224 ELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPR 300 (593)
Q Consensus 224 EL~~lRG~G~Gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~~~~dp~~esr~~---~~yvPr 300 (593)
||++|||||+||||+||||||||||||||+||++++++||||||++|||||||||||||+++||.+|+|.. .+||||
T Consensus 243 eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~dp~~Esr~~~~~~iYvPr 322 (919)
T PLN02264 243 ELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDSDMMAESRVEKPLPMYVPR 322 (919)
T ss_pred HHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCCCCcccccccCCCceeCCC
Confidence 99999999999999999999999999999999999999999999679999999999999999999999954 479999
Q ss_pred CCCcchhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCcCCCCccccchhhhh-hhHHHHhhhccC
Q 007674 301 DEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTG 379 (593)
Q Consensus 301 De~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~Di~~LY~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 379 (593)
||+|+++|+++|.+++++|++|+++|.|+++++.+ +|+||+||++||++|+++|.....+..+.+ +|.+.+.+++++
T Consensus 323 DE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~~p~~~~~~~~~~~~ 400 (919)
T PLN02264 323 DEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLGFQDDIFKKFPLPKVVTTLQESS 400 (919)
T ss_pred CCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcchhhhHhhcCChHHHHHHhhhcc
Confidence 99999999999999999999999999999988654 999999999999999999873112223334 434444447889
Q ss_pred CccccccCccccccCcccccccHHHHHHHhhCCCcccccccccCCCCCCCCCCccCCCCCCCcHHHHHHhhCCcccHHHH
Q 007674 380 DNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEA 459 (593)
Q Consensus 380 ~~~lkfp~P~vi~~d~~~W~~DeeFgrQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~IT~e~ie~~L~g~~Tleea 459 (593)
+.+||||+|+||++|+++|++|+|||||+|||+||++|++|++||++|+|||+.||+++|+||++||+++|+| +||+||
T Consensus 401 ~~~lkf~~P~vi~~d~~~W~~DeeFarQ~LaGvNP~~I~rl~e~P~~s~ld~~~yg~~~s~it~e~v~~~L~G-~Tl~eA 479 (919)
T PLN02264 401 EGLLKYDTPKILSKDKFAWLRDDEFARQAIAGINPVNIERVKVFPPVSNLDPEIYGPQHSALTEDHIIGHLDG-LSVQQA 479 (919)
T ss_pred cccccCCCCceeecChhhccCHHHHHHHHHcCCCchhhhhhhhcCCCCCCCHhhcCCccchhhHHHHhhccCC-CcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 999999
Q ss_pred HhcCcEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCCCCcCeEEeCCCCCCCChHHH
Q 007674 460 IKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWK 539 (593)
Q Consensus 460 l~~grLFilDy~d~~lp~l~~in~~~g~~~YAprtLffl~~dG~L~PIAIqL~~pp~~~~~~~~~VftPsd~~~~~~~W~ 539 (593)
|++|||||+||||++|||+++||.++++++|||+||||++++|+|+||||||++|++.+.+++++||||+++++++|.|+
T Consensus 480 l~~~rLFilDy~d~~lp~l~~in~~~g~~~YAprtLFfL~~dG~L~PlAIqL~~p~~~~~~~~~~VftP~~d~~~~w~W~ 559 (919)
T PLN02264 480 LEENRLFMVDYHDIYLPFLDRINALDGRKAYATRTIFFLTRLGTLKPIAIELSLPPSGPNSRSKRVVTPPVDATSNWMWQ 559 (919)
T ss_pred HHcCCEEEEeChhhhhhhhhhhccCCCcEeEcceEEEEECCCCCEeeEEEEecCCCCCCCcCcceeECCCCCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999998766566789999977777899999
Q ss_pred HHHHHHHhccchhHHHHHHHHHHH-----------------------HhHHHHhhhhhhhhhhcc
Q 007674 540 LAKAHVLAHDAGYHQLVSHWYVQF-----------------------LLIHVVDLYGIKWLVKKK 581 (593)
Q Consensus 540 LAKa~v~~aD~~~HQlisH~LrTH-----------------------L~PH~~~Tl~IN~~AR~~ 581 (593)
||||||++||++|||+|+|||+|| |.|||++||+||++||++
T Consensus 560 LAK~~V~~aD~~~HQlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~TL~INalAR~~ 624 (919)
T PLN02264 560 LAKAHVCSNDAGVHQLVNHWLRTHACLEPFILAAHRQLSAMHPIFKLLDPHMRYTLEINALARQT 624 (919)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhhhhhhcccCCccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999996 679999999999999986
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=1.1e-160 Score=1350.86 Aligned_cols=510 Identities=41% Similarity=0.709 Sum_probs=472.3
Q ss_pred cceeeeEEeeeee-eeEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCC-CCC-Ccc----eecccc
Q 007674 55 NTIKAIATSTEKS-IKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDP-KTG-LDK----STIQDY 127 (593)
Q Consensus 55 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~G~~v~lqLvS~~~~~-~~g-~~~----~~l~~w 127 (593)
++++|+|++|+++ ++++++.+ +++|.++|++||+|+|||||++++| +|| +|| ++|++|
T Consensus 19 ~~~~~~v~l~~k~~ld~~~~~~---------------~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w 83 (866)
T PLN02337 19 EKIKGTVVLMKKNVLDFNDFNA---------------SVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKW 83 (866)
T ss_pred ceEEEEEEEEEecccchhhccc---------------chhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhh
Confidence 3688888888776 56655443 7899999999999999999999998 677 443 899999
Q ss_pred ccccCCCCCCceEEEEEEEecCCCCceeEEEEEecCCCceeeeeEEEeecCC-CcEEEeeCCccccCCCCCCceEEeecc
Q 007674 128 ARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTNK 206 (593)
Q Consensus 128 ~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~RifF~nk 206 (593)
+++.....+++++|+|+|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||+++|+.+||||+||
T Consensus 84 ~~~~~~~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk 163 (866)
T PLN02337 84 ITTITSLTAGESAFKVTFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNK 163 (866)
T ss_pred ccCCCCCCCCceEEEEEEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCC
Confidence 9876565677789999999999999999999999999999999999999995 999999999999999999999999999
Q ss_pred ccccCCCcHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCC-CCCCCCccccCCCCCCCC
Q 007674 207 LYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDT 285 (593)
Q Consensus 207 ~yLP~~tp~~L~~~Re~EL~~lRG~G~Gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG-~~~PYPRR~RTGR~~~~~ 285 (593)
+|||++||++|++|||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++
T Consensus 164 ~ylp~~tP~~l~~~R~~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~ 243 (866)
T PLN02337 164 TYLPSQTPAPLRPYREEELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKT 243 (866)
T ss_pred CcCcccccHHHHHHHHHHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 679999999999999999
Q ss_pred CCCcccccC----CCccCCCCCcchhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCcCCCCcccc
Q 007674 286 DQFSEKREG----NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQE 361 (593)
Q Consensus 286 dp~~esr~~----~~yvPrDe~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~Di~~LY~~g~~l~~~~~~ 361 (593)
||.+|+|.. .+||||||+|+++|+++|.++++||++|+++|.|+++++.+..+|++|+||++||++|+++|..+..
T Consensus 244 dp~~esr~~~~~~~~yvPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~~~~ 323 (866)
T PLN02337 244 DPNSESRLPLLSLNIYVPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNGPLL 323 (866)
T ss_pred CCccccccccCCCCcccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCchHH
Confidence 999999943 5799999999999999999999999999999999999988889999999999999999999874332
Q ss_pred chhhh-h-hhHHHHhhhccCCccccccCccccccCcccccccHHHHHHHhhCCCcccccccccCCCCCCCCCCccCCCCC
Q 007674 362 GFWNT-L-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPES 439 (593)
Q Consensus 362 ~~~~~-~-~~~~~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFgrQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s 439 (593)
+..+. + ++.++++++++++.++|||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+|+|
T Consensus 324 ~~~~~~~p~~~~~~~~~~~~~~~l~fp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~rl~~~P~~~~ld~~~yg~~~s 403 (866)
T PLN02337 324 EELRKNIPLEMLKELLRTDGEYLLKFPMPQVIKEDKSAWRTDEEFAREMLAGVNPVVIRRLTEFPPKSKLDPKKYGDQNS 403 (866)
T ss_pred HHhhhcChHHHHHHHHhhcccccccCCCCceeecccccccCHHHHHHHHhcCCCChheeecccCCCcccCChhhcCCccC
Confidence 23333 3 457888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhhCCcccHHHHHhcCcEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCC
Q 007674 440 AITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGK 519 (593)
Q Consensus 440 ~IT~e~ie~~L~g~~Tleeal~~grLFilDy~d~~lp~l~~in~~~g~~~YAprtLffl~~dG~L~PIAIqL~~pp~~~~ 519 (593)
+||+|||++.|+| +||+|||++|||||+||||++|||+.++|...+ +.||||||||++++|+|+||||||++|+..++
T Consensus 404 ~iT~e~v~~~L~g-~Tl~eAl~~~rLfi~Dy~d~~lp~l~~in~~~~-k~yA~~tLffl~~dG~L~PlAIqL~~p~~~~~ 481 (866)
T PLN02337 404 SITEEHIEKNLEG-LTVQEALEKNRLFILDHHDALMPYLRRINSTST-KTYATRTLLFLKDDGTLKPLAIELSLPHPQGD 481 (866)
T ss_pred ccCHHHHHhccCC-ccHHHHHHcCCEEEEecchhcCcccccccCCCC-ccccceeEEEECCCCCEeEEEEEeccCCCCcc
Confidence 9999999999998 999999999999999999999999999998655 49999999999999999999999999876543
Q ss_pred --CCcCeEEeCCCCCCCChHHHHHHHHHHhccchhHHHHHHHHHHH-----------------------HhHHHHhhhhh
Q 007674 520 --PQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWYVQF-----------------------LLIHVVDLYGI 574 (593)
Q Consensus 520 --~~~~~VftPsd~~~~~~~W~LAKa~v~~aD~~~HQlisH~LrTH-----------------------L~PH~~~Tl~I 574 (593)
++.++||||+++++++|.|+||||||++||++|||+|+|||+|| |.|||++||+|
T Consensus 482 ~~g~~~~VfTP~~~~~~~~~W~lAK~~v~~aD~~~HqlisHllrTHlv~EpfiIAt~RqLs~~HPI~kLL~PHfr~Tl~I 561 (866)
T PLN02337 482 KFGAVSKVYTPAEDGVEGSVWQLAKAYVAVNDSGYHQLISHWLNTHAVIEPFVIATNRQLSVLHPIHKLLHPHFRDTMNI 561 (866)
T ss_pred cCCCCCCeECCCCCCCCcchHHHHHHHHHHhhHHHHHHHHHHhhhhhhHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHH
Confidence 46799999998777799999999999999999999999999996 67999999999
Q ss_pred hhhhhcc
Q 007674 575 KWLVKKK 581 (593)
Q Consensus 575 N~~AR~~ 581 (593)
|++||++
T Consensus 562 N~~AR~~ 568 (866)
T PLN02337 562 NALARQI 568 (866)
T ss_pred HHHHHHh
Confidence 9999975
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=1.4e-113 Score=963.98 Aligned_cols=363 Identities=55% Similarity=0.929 Sum_probs=301.9
Q ss_pred cHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCC-CCCCCCccccCCCCCCCCCCCcccc
Q 007674 214 PDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKR 292 (593)
Q Consensus 214 p~~L~~~Re~EL~~lRG~G~Gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG-~~~PYPRR~RTGR~~~~~dp~~esr 292 (593)
|++|+++||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||.+|+|
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 789999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred cCCCccCCCCCcchhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCcCCCCccccchhhhh-hhHH
Q 007674 293 EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRL 371 (593)
Q Consensus 293 ~~~~yvPrDe~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~Di~~LY~~g~~l~~~~~~~~~~~~-~~~~ 371 (593)
..++||||||+|+++|+++|.++++||++|.++|.|++++..+..+|+||+||++||++|+++|. ..+.+.+ ++.+
T Consensus 81 ~~~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~---~~~~~~~~~~~~ 157 (667)
T PF00305_consen 81 SGDIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPT---DLLKKLIPLELL 157 (667)
T ss_dssp -SSGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--H---HHHCCHTTSTTC
T ss_pred cccccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchh---hHhhhcCcHHHH
Confidence 88999999999999999999999999999999999999887788999999999999999998883 1111222 4567
Q ss_pred HHhhhccCCccccccCccccccCcccccccHHHHHHHhhCCCcccccccccCCCCCCCCCCccCCCCCCCcHHHHHHhhC
Q 007674 372 VKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIG 451 (593)
Q Consensus 372 ~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFgrQ~LaG~NP~~I~r~~e~P~~s~Ldp~~yG~~~s~IT~e~ie~~L~ 451 (593)
++++..+++.++|||+|+|+++++++|++|+|||||+|||+||++|++|++||++|+|||++||+++|+||+|||+..|+
T Consensus 158 ~~~~~~~~~~~~kf~~p~v~~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~~~ld~~~yg~~~s~it~e~i~~~l~ 237 (667)
T PF00305_consen 158 KELFRTDGENILKFPTPQVIERDRFAWRTDEEFARQRLAGVNPVVIRRLTEFPPKSKLDPAIYGDQESPITDEHIEPQLE 237 (667)
T ss_dssp CTTSBETSSSEEB----HHHHCHHHHTTSHHHHHHHHHHSSSTTSEEE-SSSSTTS-SSHHCCTSSB-STTHHHHHHHCH
T ss_pred HHHHhhcccceeeCCCCccchhhhhccCChHHHHHHHHcCCCchHhhccccCCccccccHhhcCCccCCchHHHhhhccC
Confidence 78888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHhcCcEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCCCCcCeEEeCCCC
Q 007674 452 GMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWH 531 (593)
Q Consensus 452 g~~Tleeal~~grLFilDy~d~~lp~l~~in~~~g~~~YAprtLffl~~dG~L~PIAIqL~~pp~~~~~~~~~VftPsd~ 531 (593)
| +||++||++|||||+||||+++|++++||. .+++.|||+||||++++|+|+||||||++|++.+.++.++||||+++
T Consensus 238 g-~tl~~al~~~rLfi~Dy~~~~~~~~~~i~~-~~~~~~A~~~Lf~l~~~g~L~PlAIqL~~p~~~~~~~~~~v~tP~~d 315 (667)
T PF00305_consen 238 G-LTLEEALKDGRLFILDYHDLFGPYLNKINE-KGRYAYAPRALFFLNPDGTLKPLAIQLSQPGPEGPPQFNPVFTPSDD 315 (667)
T ss_dssp C-S-HHHHHHTT-EEEEEEGGGTTHHHHHHTT-CCGBG-EEEEEEEEETTSEEEEEEEECSECBTTCS-EEEEEE-TTSS
T ss_pred C-CcHHHHHhcCCeEEEeehhhcccccccccc-CCcEeccceeEEEEcCCCCEeeeEEeccCCCCcccCccceeeecCCC
Confidence 9 999999999999999999999999999998 78899999999999999999999999998876554567899999966
Q ss_pred CCCChHHHHHHHHHHhccchhHHHHHHHHHHH-----------------------HhHHHHhhhhhhhhhhcc
Q 007674 532 STECWLWKLAKAHVLAHDAGYHQLVSHWYVQF-----------------------LLIHVVDLYGIKWLVKKK 581 (593)
Q Consensus 532 ~~~~~~W~LAKa~v~~aD~~~HQlisH~LrTH-----------------------L~PH~~~Tl~IN~~AR~~ 581 (593)
++.+|.|+||||||++||++|||+|+||++|| |.|||++||+||++||.+
T Consensus 316 ~~~~~~W~lAK~~v~~aD~~~HqlisHll~THlv~Ep~~vAt~R~Ls~~HPi~kLL~PH~r~tl~IN~~Ar~~ 388 (667)
T PF00305_consen 316 GTEDWLWLLAKAHVQVADANYHQLISHLLRTHLVMEPFIVATHRQLSEMHPIYKLLHPHFRYTLAINALARQS 388 (667)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHS-TTSHHHHHHGGGGTTHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHhhhHHHHHHHhhhhhhhhhhHHHHHHHhcCCCCCCCceeeccceeecchhhhHHHHHH
Confidence 55678899999999999999999999999997 679999999999999975
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=5.5e-39 Score=298.32 Aligned_cols=130 Identities=52% Similarity=0.866 Sum_probs=113.0
Q ss_pred EeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCcc----eeccccccccCCCCCCceEEEEEE
Q 007674 70 VKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK----STIQDYARKIGADGDGNMQYESEF 145 (593)
Q Consensus 70 ~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~G~~v~lqLvS~~~~~~~g~~~----~~l~~w~~~~~~~~~~~~~y~~~f 145 (593)
++|+++++++++++++.+. +.+|.+.|++||+|+||||||++||+||+|| ++|++|.++. ++++.|+++|
T Consensus 3 vka~V~v~~k~~~~~~~~~--~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~----~~e~~y~~~F 76 (137)
T cd01751 3 VKATVTVMKKNKLDLNDDG--SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL----AGESAYEAEF 76 (137)
T ss_pred EEEEEEEEEeecccccccc--chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC----CcceEEEEEE
Confidence 4555555555444444333 6689999999999999999999999999665 8999998653 5567999999
Q ss_pred EecCCCCceeEEEEEecCCCceeeeeEEEeecCC-CcEEEeeCCccccCCCCCCceEEeec
Q 007674 146 EVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFFTN 205 (593)
Q Consensus 146 ~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~RifF~n 205 (593)
+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||+++|+.+||||+|
T Consensus 77 ~v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 77 EVPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred EeecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 9999999999999999999999999999999995 99999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.29 E-value=1.8e-11 Score=107.76 Aligned_cols=83 Identities=39% Similarity=0.625 Sum_probs=64.5
Q ss_pred cEEEEEEeeecCCCCCCc-ceeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecC-CCceeeeeEEEeecC-C
Q 007674 103 SLLLELVSAELDPKTGLD-KSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEH-HKEMYLKDIVLDGLP-N 179 (593)
Q Consensus 103 ~v~lqLvS~~~~~~~g~~-~~~l~~w~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h-~~e~fl~~i~l~~~p-~ 179 (593)
+|.|+|++++.+ +|.. ...++.|. ...+ ..|+..|+++.++|++++|.|.|++ +.+|||++|+|++.+ +
T Consensus 20 ~V~l~L~g~~~~--s~~~~~~~~~~~~-----f~~g-~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~~~ 91 (105)
T smart00308 20 SVSLSLVGAEGD--GKESKLDYLFKGI-----FARG-STYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLPTG 91 (105)
T ss_pred eEEEEEEeCCCC--CcceeccccCCcc-----ccCC-ceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECCCC
Confidence 599999997765 3321 13344432 2333 5788899999999999999999999 899999999998766 4
Q ss_pred CcEEEeeCCccccC
Q 007674 180 GPVNVTCNSWLHSK 193 (593)
Q Consensus 180 ~~i~FpCnsWV~~~ 193 (593)
..++|+||+||++.
T Consensus 92 ~~~~F~c~~Wl~~~ 105 (105)
T smart00308 92 GKYHFPCNSWVYPD 105 (105)
T ss_pred CEEEEEcCceeCCC
Confidence 67999999999863
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=98.85 E-value=7.2e-09 Score=91.38 Aligned_cols=65 Identities=29% Similarity=0.526 Sum_probs=57.8
Q ss_pred eEEEEEEEecCCCCceeEEEEEec---CCCceeeeeEEEeecCC-CcEEEeeCCccccCCCCCCceEEe
Q 007674 139 MQYESEFEVPSGFGEIGAILVENE---HHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVFF 203 (593)
Q Consensus 139 ~~y~~~f~~~~dfG~pgav~v~n~---h~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~RifF 203 (593)
...+..|+++.++|++.+|.|.+. +...|||++|+|...+. ..+.|+||+||....+++..||||
T Consensus 45 ~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 45 STDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp EEEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred ceEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 566677777889999999999999 78899999999987564 579999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.68 E-value=1.8e-07 Score=83.68 Aligned_cols=64 Identities=13% Similarity=0.232 Sum_probs=55.0
Q ss_pred eEEEEEEEecCCCCceeEEEEEecCCC---ceeeeeEEEeecCC-CcEEEeeCCccccCCCCCCceEE
Q 007674 139 MQYESEFEVPSGFGEIGAILVENEHHK---EMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQKRVF 202 (593)
Q Consensus 139 ~~y~~~f~~~~dfG~pgav~v~n~h~~---e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~~~Rif 202 (593)
..++..|+++.++|++.+|.|.+.+.. +|||++|+|.+... ..++|+||+||.....++..|+|
T Consensus 48 ~~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~ 115 (116)
T cd00113 48 STDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSL 115 (116)
T ss_pred CceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeec
Confidence 456667778889999999999999865 99999999987664 57999999999999888888876
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.26 E-value=4.7e-06 Score=75.56 Aligned_cols=78 Identities=13% Similarity=0.250 Sum_probs=54.0
Q ss_pred cEEEEEEeeecCCCCCCcceeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecC-CCceeeeeEEEeecCC-C
Q 007674 103 SLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEH-HKEMYLKDIVLDGLPN-G 180 (593)
Q Consensus 103 ~v~lqLvS~~~~~~~g~~~~~l~~w~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h-~~e~fl~~i~l~~~p~-~ 180 (593)
+|.|+||-++- .++ +..|.+ ....++ ...|.+ . ++++|++-.|.|.|.. .+.|||+.|+|.+ |. .
T Consensus 20 ~V~i~L~G~~g--~S~--~~~L~~----~F~~G~-~d~F~v--~-~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~-~~g~ 86 (109)
T cd02899 20 TIEITLLGSSG--RSN--PKTLSQ----GFYPGS-LKRIRF--R-AADVGDINAIILSNTALNDPWYCDYVRIKS-EDGK 86 (109)
T ss_pred eEEEEEEECCC--CcC--CEEccC----ccCCCc-eEEEEE--C-ccccCceEEEEEECCCCCCCceeeEEEEEC-CCCC
Confidence 48899997532 222 222332 112222 245644 5 8999999999998887 6789999999986 74 5
Q ss_pred cEEEeeCCccccC
Q 007674 181 PVNVTCNSWLHSK 193 (593)
Q Consensus 181 ~i~FpCnsWV~~~ 193 (593)
.++||||+|+..-
T Consensus 87 ~~~Fpc~rWla~~ 99 (109)
T cd02899 87 VFAFNVKRWIGYP 99 (109)
T ss_pred EEEEEcceeeCCc
Confidence 6889999999653
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=97.86 E-value=7.1e-05 Score=67.96 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=56.4
Q ss_pred cEEEEEEeeecCCCCCCcceeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCC
Q 007674 103 SLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPN 179 (593)
Q Consensus 103 ~v~lqLvS~~~~~~~g~~~~~l~~w~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p~ 179 (593)
+|.|+|+-++-+ ++ ...|..... ....+ ...+..+.++.++|++-.|.|.... ...|||+.|+|.+..+
T Consensus 20 ~V~i~l~G~~g~--S~--~~~L~~~~~---~FerG-~~d~F~v~~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~~~ 91 (113)
T cd01753 20 YIYLTLVGTAGE--SE--KQLLDRPGY---DFERG-AVDEYKVKVPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGPGG 91 (113)
T ss_pred EEEEEEEECCCc--cc--CEEcCCCCC---ccCCC-CeeEEEEecccCCCCcEEEEEEECCCCCCCCeeecEEEEEcCCC
Confidence 488888864432 22 223332211 12333 3344456677899999999998876 6799999999986334
Q ss_pred CcEEEeeCCccccCC
Q 007674 180 GPVNVTCNSWLHSKH 194 (593)
Q Consensus 180 ~~i~FpCnsWV~~~~ 194 (593)
..++||||+|+....
T Consensus 92 ~~~~F~c~rWl~~~~ 106 (113)
T cd01753 92 DEYHFPCYRWIEGYG 106 (113)
T ss_pred CEEEEEhHHeECCCC
Confidence 568999999997753
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.85 E-value=0.00023 Score=64.93 Aligned_cols=86 Identities=14% Similarity=0.320 Sum_probs=56.2
Q ss_pred CcEEEEEEeeecCCCCCCcceeccccccccCCCCCC-ceEEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeec
Q 007674 102 KSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDG-NMQYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGL 177 (593)
Q Consensus 102 ~~v~lqLvS~~~~~~~g~~~~~l~~w~~~~~~~~~~-~~~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~ 177 (593)
-+|.++|+-+.- . .+...|.++. .......+ ...|.+ +. .++|++-.|.|.... ...|||+.|+|.+.
T Consensus 19 a~V~i~L~G~~g--~--s~~~~L~~~~-~~~~FerGs~d~F~i--~~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~ 90 (120)
T cd01756 19 ANVFITLYGENG--D--TGKRKLKKSN-NKNKFERGQTDKFTV--EA-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREP 90 (120)
T ss_pred cEEEEEEEeCCC--c--cccEEccCCC-cCCcccCCCeEEEEE--Ee-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEEC
Confidence 347888875221 1 2234455540 11122333 134544 45 799999999998876 46899999999764
Q ss_pred C-CCcEEEeeCCccccCCC
Q 007674 178 P-NGPVNVTCNSWLHSKHD 195 (593)
Q Consensus 178 p-~~~i~FpCnsWV~~~~~ 195 (593)
. +..++||||+|+...+.
T Consensus 91 ~~~~~~~F~~~~Wl~~~~~ 109 (120)
T cd01756 91 GTGDEYTFPCNRWLDKDED 109 (120)
T ss_pred CCceEEEEEeCCccCCCCC
Confidence 4 35689999999988754
No 12
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.63 E-value=0.00016 Score=66.27 Aligned_cols=55 Identities=13% Similarity=0.360 Sum_probs=43.8
Q ss_pred EEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCC-CcEEEeeCCccccCCC
Q 007674 140 QYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHD 195 (593)
Q Consensus 140 ~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~ 195 (593)
.|++.++ +.++|++-.|.|.... ...|||+.|+|++.+. ..++||||+|+.-.+.
T Consensus 42 ~f~~~v~-~~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 42 SLEMTFD-CQNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred ceEEEEe-cCCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 3544444 3999999999998765 6799999999988774 5699999999977654
No 13
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.60 E-value=0.00058 Score=62.31 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=57.5
Q ss_pred cEEEEEEeeecCCCCCCcceeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecC-
Q 007674 103 SLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLP- 178 (593)
Q Consensus 103 ~v~lqLvS~~~~~~~g~~~~~l~~w~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p- 178 (593)
+|.++|+.+.-+ + ++..|.+... .....+ ..++..+..+.++|++-.|.|.... ...|||++|+|.+..
T Consensus 20 ~V~i~L~G~~g~--s--~~~~L~~~~~--~~F~rG-~~~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t 92 (120)
T cd01752 20 KVTITLYGAEGE--S--EPHHLRDPEK--PIFERG-SVDSFLLTTPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQT 92 (120)
T ss_pred EEEEEEEeCCCC--c--ccEEcCCCCc--cceeCC-CeeEEEecCccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCC
Confidence 488888864321 2 1233433211 123333 4565666677899999999996654 569999999997644
Q ss_pred CCcEEEeeCCccccCCC
Q 007674 179 NGPVNVTCNSWLHSKHD 195 (593)
Q Consensus 179 ~~~i~FpCnsWV~~~~~ 195 (593)
+..++||||+|+...+.
T Consensus 93 ~~~~~F~~~rWl~~~~~ 109 (120)
T cd01752 93 GKKWFFLCNDWLSVEEG 109 (120)
T ss_pred CcEEEEEeCcEECCcCC
Confidence 35689999999987653
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.25 E-value=0.00082 Score=62.79 Aligned_cols=55 Identities=9% Similarity=0.126 Sum_probs=43.0
Q ss_pred eEEEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEeecCC----CcEEEeeCCccccCCC
Q 007674 139 MQYESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDGLPN----GPVNVTCNSWLHSKHD 195 (593)
Q Consensus 139 ~~y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~~p~----~~i~FpCnsWV~~~~~ 195 (593)
..|.+ +.+.++|++-.|.|.... ...|||.+|+|.+... ..++||||+|+...+.
T Consensus 58 d~F~v--~~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 58 DRFSG--RGPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred cEEEE--EeccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 35644 457889999999998765 6799999999986542 2689999999977654
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=50.98 E-value=80 Score=28.96 Aligned_cols=50 Identities=10% Similarity=0.128 Sum_probs=40.2
Q ss_pred eEEEEEEEecCCCCceeEEEEEecC----------CCceeeeeEEEeecCCCcEEEeeCC
Q 007674 139 MQYESEFEVPSGFGEIGAILVENEH----------HKEMYLKDIVLDGLPNGPVNVTCNS 188 (593)
Q Consensus 139 ~~y~~~f~~~~dfG~pgav~v~n~h----------~~e~fl~~i~l~~~p~~~i~FpCns 188 (593)
..|+.-+..+.++|.+-.|.+.=+. ...||++.|+|++...+.-..-|.+
T Consensus 46 ~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 46 KTYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred CEEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 6788888899999999999885432 3589999999987776666677876
No 16
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=50.98 E-value=13 Score=44.70 Aligned_cols=53 Identities=9% Similarity=0.370 Sum_probs=38.4
Q ss_pred EEEEEEecCCCCceeEEEEEecC---CCceeeeeEEEee-cCCCcEEEeeCCccccCC
Q 007674 141 YESEFEVPSGFGEIGAILVENEH---HKEMYLKDIVLDG-LPNGPVNVTCNSWLHSKH 194 (593)
Q Consensus 141 y~~~f~~~~dfG~pgav~v~n~h---~~e~fl~~i~l~~-~p~~~i~FpCnsWV~~~~ 194 (593)
-+.+|+. .++|..--+.|--.. ...||+++|.|.. +-+.++-|||++|.-+..
T Consensus 1013 ~~f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~ge 1069 (1295)
T KOG2080|consen 1013 PLFKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNGE 1069 (1295)
T ss_pred ceeEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCcc
Confidence 4556654 899999888884432 5689999987732 235689999999986654
No 17
>COG3101 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.99 E-value=15 Score=35.49 Aligned_cols=37 Identities=19% Similarity=0.406 Sum_probs=25.2
Q ss_pred cCeEEeCCCCCCCChHHHHHHHHHHhccchhHHHHHHHHHH
Q 007674 522 WKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWYVQ 562 (593)
Q Consensus 522 ~~~VftPsd~~~~~~~W~LAKa~v~~aD~~~HQlisH~LrT 562 (593)
+.|||+|+|+..+...=-.|.-+.. ++.|+ |+||+-.
T Consensus 29 DEPiYlPAde~vpyhri~FA~GfYa---SalHE-IaHWcvA 65 (180)
T COG3101 29 DEPIYLPADEEVPYHRIVFAHGFYA---SALHE-ISHWCIA 65 (180)
T ss_pred CcceeccCccCCCceeEEEechhHH---HHHHH-HHHHHHc
Confidence 4689999997655444444544444 46899 9999754
No 18
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=28.89 E-value=64 Score=31.66 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCCCCCCCCcccc
Q 007674 211 SQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCR 277 (593)
Q Consensus 211 ~~tp~~L~~~Re~EL~~lRG~G~Gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG~~~PYPRR~R 277 (593)
-+.++...+..--+|++-- ..=|++|.|||+.-|.+ +.|.-||- | ||||=
T Consensus 87 v~~~a~~vK~~~i~iEe~h--------plGRL~DiDV~~~~g~~-----iSR~~lg~---~-~R~Cl 136 (170)
T PF03802_consen 87 VDGDAEEVKRIMIEIEESH--------PLGRLFDIDVLDPDGKQ-----ISREDLGL---P-PRRCL 136 (170)
T ss_pred eCCCHHHHHHHHHHHHccC--------cchheEEEeeecCCCCc-----cCHHHcCC---C-CCccc
Confidence 4445555666667777665 34499999999643433 55777762 3 78885
No 19
>PF04315 DUF462: Protein of unknown function, DUF462; InterPro: IPR007411 This family consists of bacterial proteins of uncharacterised function.
Probab=27.35 E-value=28 Score=34.26 Aligned_cols=38 Identities=16% Similarity=0.396 Sum_probs=22.6
Q ss_pred CcCeEEeCCCCCCCChHHHHHHHHHHhccchhHHHHHHHHHH
Q 007674 521 QWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWYVQ 562 (593)
Q Consensus 521 ~~~~VftPsd~~~~~~~W~LAKa~v~~aD~~~HQlisH~LrT 562 (593)
.+-|+|.|+++......=..|-=|+. +..|| |+||.-.
T Consensus 18 ~dEP~YlPa~~~~~~~rI~Fahgf~a---SALHE-IaHWciA 55 (164)
T PF04315_consen 18 DDEPIYLPADDECPYHRIIFAHGFFA---SALHE-IAHWCIA 55 (164)
T ss_pred CCCccccCCCCCCCceeEEeecchHH---HHHHH-HHHHHhc
Confidence 45699999985422222222333333 56899 9999744
No 20
>PF11248 DUF3046: Protein of unknown function (DUF3046); InterPro: IPR021408 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=24.15 E-value=30 Score=29.02 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.7
Q ss_pred CCcHHHHHHhhCCcccHHHHHhcCc
Q 007674 440 AITTELIEKEIGGMISVEEAIKQKK 464 (593)
Q Consensus 440 ~IT~e~ie~~L~g~~Tleeal~~gr 464 (593)
.|-.+|+-..|+| .|.+|||++|-
T Consensus 21 ~la~dhvL~~LGg-rT~~eAL~~G~ 44 (63)
T PF11248_consen 21 SLARDHVLSELGG-RTAAEALEAGV 44 (63)
T ss_pred HHHHhcchhhcCC-cCHHHHHHcCC
Confidence 6777888889998 99999999873
No 21
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=22.91 E-value=75 Score=31.21 Aligned_cols=53 Identities=32% Similarity=0.500 Sum_probs=32.8
Q ss_pred cccCCCcHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCCCCCCCCcccc
Q 007674 208 YLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCR 277 (593)
Q Consensus 208 yLP~~tp~~L~~~Re~EL~~lRG~G~Gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG~~~PYPRR~R 277 (593)
|+--+.|+.-.+..--+|++-.-=| |++|.|||+.-|. .+.|--|| +| ||||=
T Consensus 82 ~~~v~~~a~~vK~~~i~iEe~hplG--------RL~DlDV~~~~g~-----~iSR~~lg---~~-~R~Cl 134 (165)
T TIGR03124 82 FLVVDAPALELKRLMIKLEESHPLG--------RLWDIDVLDADGK-----SLSRTDLG---LP-PRKCL 134 (165)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCchh--------hheeheeecCCCC-----CcCHHHcC---CC-CCeee
Confidence 3334556555666666666654222 8999999974333 24566665 55 88885
Done!