Query 007675
Match_columns 593
No_of_seqs 352 out of 2662
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 07:42:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 9.3 1.3E+03 0.045 22.9 21.3 51 266-316 133-186 (491)
2 2wfu_A Probable insulin-like p 5.9 1.6E+02 0.0055 18.8 0.6 8 583-590 18-25 (26)
3 2knc_A Integrin alpha-IIB; tra 3.5 1.4E+03 0.047 17.0 4.3 20 555-574 13-32 (54)
4 1ddb_A Protein (BID); apoptosi 3.3 4.8E+02 0.017 24.5 1.9 16 569-584 150-165 (195)
5 2lht_A Cellophane-induced prot 4.4 2.7E+02 0.0093 23.3 0.0 32 19-55 21-52 (122)
6 3mp7_B Preprotein translocase 2.6 1.7E+03 0.059 16.7 4.2 25 555-579 31-55 (61)
7 3h3g_B Parathyroid hormone-rel 2.6 7E+02 0.024 15.6 1.4 10 445-454 11-20 (24)
8 4dve_A Biotin transporter BIOY 2.4 2.1E+03 0.073 19.9 5.5 52 263-314 98-149 (198)
9 3j1r_A Archaeal adhesion filam 2.3 1.3E+03 0.045 14.5 2.5 16 264-279 8-23 (26)
10 2ww9_B Protein transport prote 2.3 1.6E+03 0.054 18.0 3.6 23 556-578 49-71 (80)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=9.30 E-value=1.3e+03 Score=22.94 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHH---HHHhhhhhhhhccCCcchHHHHHHHHHHHHHHHHHhh
Q 007675 266 PFCTGFAAGCMIWM---VIAEVLPDAFKEASPTPVASAATISVAFMEALSTLFQ 316 (593)
Q Consensus 266 ~~lla~AAG~mlyv---a~~eLLPea~~~~~~~~~~~~~~lG~~lm~~L~~~l~ 316 (593)
-++.|++.|....+ -..|..|+..+.........+...|..+...+.....
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 35567777754433 3457777655432222334555666666666655554
No 2
>2wfu_A Probable insulin-like peptide 5 A chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster}
Probab=5.87 E-value=1.6e+02 Score=18.85 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=3.3
Q ss_pred CCCCCCCc
Q 007675 583 PYCNSAPE 590 (593)
Q Consensus 583 ~~~~~~~~ 590 (593)
.||++.||
T Consensus 18 ~YC~~~~~ 25 (26)
T 2wfu_A 18 AYCDSXXX 25 (26)
T ss_dssp HTSCC---
T ss_pred Hhcccccc
Confidence 37777776
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=3.46 E-value=1.4e+03 Score=16.95 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=12.5
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 007675 555 RKGSCGLIFGVGFATLCLTC 574 (593)
Q Consensus 555 ~~~~~~~~~G~~lm~~~l~~ 574 (593)
+....+.+.|+++..+..++
T Consensus 13 wiIi~svl~GLllL~li~~~ 32 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLA 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566777887776654433
No 4
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=3.26 E-value=4.8e+02 Score=24.46 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=11.9
Q ss_pred HHHHHHHhHhhccCCC
Q 007675 569 TLCLTCTKLVCLHTPY 584 (593)
Q Consensus 569 ~~~l~~~~~~~~~~~~ 584 (593)
++.++++|=||-|||-
T Consensus 150 ~lamLLaKKVa~htPs 165 (195)
T 1ddb_A 150 IMTMLLAKKVASHAPS 165 (195)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhChH
Confidence 4556788888888883
No 5
>2lht_A Cellophane-induced protein 1; secreted repeat domain, cell adhesion; NMR {Venturia inaequalis}
Probab=4.41 E-value=2.7e+02 Score=23.32 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=22.9
Q ss_pred hhhhhhcccCcchhhhcccCCcCCcccccCCCccccc
Q 007675 19 GCVAAETEGGISQKIRAAPHKNVGRSVIDGTGAENEI 55 (593)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (593)
+|-.+-+.+.+|.+.--+|.++ .|.+|||.+-
T Consensus 21 fcrs~g~~e~~crkdv~acdkk-----~d~~gresac 52 (122)
T 2lht_A 21 FCRTAGSREKDCRKDVQACDKK-----YDDQGRETAC 52 (122)
Confidence 3445666677788878888888 7778887653
No 6
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=2.64 E-value=1.7e+03 Score=16.66 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhh
Q 007675 555 RKGSCGLIFGVGFATLCLTCTKLVC 579 (593)
Q Consensus 555 ~~~~~~~~~G~~lm~~~l~~~~~~~ 579 (593)
....-...+|+++|...-++.|++-
T Consensus 31 ~~iak~~~iG~~i~G~iGf~Ikli~ 55 (61)
T 3mp7_B 31 KRAAKITGLGIILIGLIGMLIRIVG 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999998888888764
No 7
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=2.57 E-value=7e+02 Score=15.59 Aligned_cols=10 Identities=30% Similarity=0.408 Sum_probs=7.0
Q ss_pred HHHhhhhHHH
Q 007675 445 VALHALAEGL 454 (593)
Q Consensus 445 l~lHn~pEGl 454 (593)
+.+||+.|++
T Consensus 11 ~wL~~ll~~v 20 (24)
T 3h3g_B 11 FFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4568888775
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=2.43 E-value=2.1e+03 Score=19.92 Aligned_cols=52 Identities=6% Similarity=-0.036 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhccCCcchHHHHHHHHHHHHHHHHH
Q 007675 263 KFLPFCTGFAAGCMIWMVIAEVLPDAFKEASPTPVASAATISVAFMEALSTL 314 (593)
Q Consensus 263 ~~~~~lla~AAG~mlyva~~eLLPea~~~~~~~~~~~~~~lG~~lm~~L~~~ 314 (593)
..-+++.||..+.++---+.|-.....+...........++|..+.+.+...
T Consensus 98 PTgGYLiGF~~aA~v~G~l~~~~~~~~~~~~~~~~~~~~l~G~~~iy~~G~~ 149 (198)
T 4dve_A 98 PSGGYRIAWLFTPFLIGFFLKKLKITTSQNWFGELIIVLLFGVIFVDFVGAI 149 (198)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTTGGGSSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777776655544333332211111100112456677787777776544
No 9
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=2.34 E-value=1.3e+03 Score=14.55 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 007675 264 FLPFCTGFAAGCMIWM 279 (593)
Q Consensus 264 ~~~~lla~AAG~mlyv 279 (593)
.+-++.+.++++++|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456668888888886
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=2.27 E-value=1.6e+03 Score=17.96 Aligned_cols=23 Identities=17% Similarity=-0.023 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHh
Q 007675 556 KGSCGLIFGVGFATLCLTCTKLV 578 (593)
Q Consensus 556 ~~~~~~~~G~~lm~~~l~~~~~~ 578 (593)
.......+||++|.+.-++.|++
T Consensus 49 ~iak~t~iG~~imG~IGfiIkLI 71 (80)
T 2ww9_B 49 KIVKAVGIGFIAVGIIGYAIKLI 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Done!