Query 007675
Match_columns 593
No_of_seqs 352 out of 2662
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 07:42:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007675.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007675hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j7za1 d.9.1.1 (A:1-67) Strom 3.9 1.3E+02 0.0092 21.5 0.7 6 581-586 30-35 (67)
2 d1v54d_ f.23.1.1 (D:) Mitochon 2.8 4.7E+02 0.035 21.3 3.5 40 538-577 56-98 (144)
3 d2e74d2 f.23.12.1 (D:12-45) IS 2.6 5.3E+02 0.039 15.5 2.6 20 528-547 14-33 (34)
4 d2j5la1 g.61.1.1 (A:479-512) A 2.0 2.9E+02 0.021 16.8 0.6 9 584-592 11-19 (34)
5 d1ddba_ f.1.4.1 (A:) Proapopto 2.0 4.2E+02 0.031 22.6 1.9 16 569-584 150-165 (195)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 1.8 8.5E+02 0.062 17.7 3.6 18 572-589 45-62 (100)
7 d1xn7a_ a.4.5.62 (A:) Hypothet 1.8 3.7E+02 0.027 19.6 1.1 7 584-590 60-66 (78)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 1.7 9.9E+02 0.072 17.6 3.8 14 576-589 55-68 (107)
9 d1zoqc1 a.153.1.1 (C:2065-2111 1.6 3.2E+02 0.023 17.8 0.4 10 581-590 8-17 (47)
10 d1vf5c3 f.23.23.1 (C:250-286) 1.6 7E+02 0.051 15.5 2.0 18 101-118 2-19 (37)
No 1
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.91 E-value=1.3e+02 Score=21.46 Aligned_cols=6 Identities=50% Similarity=1.171 Sum_probs=2.5
Q ss_pred cCCCCC
Q 007675 581 HTPYCN 586 (593)
Q Consensus 581 ~~~~~~ 586 (593)
|||.||
T Consensus 30 ~tpnC~ 35 (67)
T d2j7za1 30 NTPNCA 35 (67)
T ss_dssp CCTTSS
T ss_pred cCCCcH
Confidence 444443
No 2
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.84 E-value=4.7e+02 Score=21.28 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=22.2
Q ss_pred HH-HhHHHHHHhhhhcCC--chHHHHHHHHHHHHHHHHHHHhH
Q 007675 538 LL-PSFGRIVKRAASLDT--RKGSCGLIFGVGFATLCLTCTKL 577 (593)
Q Consensus 538 ~y-v~~~ellPea~~~~~--~~~~~~~~~G~~lm~~~l~~~~~ 577 (593)
.| +++.+-.||...... +..+.+.++|+.+..++.+++|.
T Consensus 56 lYrisF~~t~ae~~~p~gewK~v~g~~~~~i~~s~~i~~~~r~ 98 (144)
T d1v54d_ 56 LYRLKFKESFAEMNRSTNEWKTVVGAAMFFIGFTALLLIWEKH 98 (144)
T ss_dssp HHHHHCSSCHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 888888888875533 33333444555554444444443
No 3
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.61 E-value=5.3e+02 Score=15.54 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=11.7
Q ss_pred HHHHHHHHhhHHHhHHHHHH
Q 007675 528 DHVMVFACGGLLPSFGRIVK 547 (593)
Q Consensus 528 ~~~la~aaG~~yv~~~ellP 547 (593)
+.+-+.+.|++|.+..-.+|
T Consensus 14 gt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 14 GTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHhhhhhHHhhcCC
Confidence 34456667777755555554
No 4
>d2j5la1 g.61.1.1 (A:479-512) Apical membrane antigen 1 {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=1.96 E-value=2.9e+02 Score=16.85 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=5.5
Q ss_pred CCCCCCccc
Q 007675 584 YCNSAPEAV 592 (593)
Q Consensus 584 ~~~~~~~~~ 592 (593)
.||-.||-+
T Consensus 11 kCPCeP~~~ 19 (34)
T d2j5la1 11 KCPCDPEMV 19 (34)
T ss_dssp CCSSCCEEC
T ss_pred cCCCChhhh
Confidence 466666654
No 5
>d1ddba_ f.1.4.1 (A:) Proapoptotic molecule Bid {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.95 E-value=4.2e+02 Score=22.59 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=11.5
Q ss_pred HHHHHHHhHhhccCCC
Q 007675 569 TLCLTCTKLVCLHTPY 584 (593)
Q Consensus 569 ~~~l~~~~~~~~~~~~ 584 (593)
.+.++++|=||-|||.
T Consensus 150 ~lamlLaKkV~~h~Ps 165 (195)
T d1ddba_ 150 IMTMLLAKKVASHAPS 165 (195)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhCcH
Confidence 3456778888888873
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=1.85 E-value=8.5e+02 Score=17.67 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=6.6
Q ss_pred HHHHhHhhccCCCCCCCC
Q 007675 572 LTCTKLVCLHTPYCNSAP 589 (593)
Q Consensus 572 l~~~~~~~~~~~~~~~~~ 589 (593)
.++..+++++-..+|.-|
T Consensus 45 ~~l~~~~~~~r~~~~~~~ 62 (100)
T d3dtub2 45 LLILYAVWRFHEKRNKVP 62 (100)
T ss_dssp HHHHHHHHHHBTTTCCSC
T ss_pred HHHHHHhhhhhccCCCCC
Confidence 333334433333333333
No 7
>d1xn7a_ a.4.5.62 (A:) Hypothetical protein YhgG {Escherichia coli [TaxId: 562]}
Probab=1.80 E-value=3.7e+02 Score=19.60 Aligned_cols=7 Identities=57% Similarity=1.156 Sum_probs=3.1
Q ss_pred CCCCCCc
Q 007675 584 YCNSAPE 590 (593)
Q Consensus 584 ~~~~~~~ 590 (593)
+|.|-||
T Consensus 60 sCKsCPE 66 (78)
T d1xn7a_ 60 SCKSCPE 66 (78)
T ss_dssp SCCCCCC
T ss_pred CCCCCCC
Confidence 4444444
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=1.72 E-value=9.9e+02 Score=17.59 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=5.4
Q ss_pred hHhhccCCCCCCCC
Q 007675 576 KLVCLHTPYCNSAP 589 (593)
Q Consensus 576 ~~~~~~~~~~~~~~ 589 (593)
.++.++-.++|.-|
T Consensus 55 ~~~~~~r~~~~~~~ 68 (107)
T d3ehbb2 55 ICIVRFNRRANPVP 68 (107)
T ss_dssp HHHHHSBTTTSSSC
T ss_pred HHhhhhhccCCccc
Confidence 33333333344444
No 9
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.64 E-value=3.2e+02 Score=17.80 Aligned_cols=10 Identities=30% Similarity=0.351 Sum_probs=6.9
Q ss_pred cCCCCCCCCc
Q 007675 581 HTPYCNSAPE 590 (593)
Q Consensus 581 ~~~~~~~~~~ 590 (593)
.|-.+||+||
T Consensus 8 ~tLrsP~sP~ 17 (47)
T d1zoqc1 8 RTLKSPSSPQ 17 (47)
T ss_dssp HTCCSCCCHH
T ss_pred HHhcCCCCHH
Confidence 3566778886
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.61 E-value=7e+02 Score=15.52 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=0.0
Q ss_pred CcchhHHHhhhhHHHHHH
Q 007675 101 GPQWAGICNGMAAGVMLA 118 (593)
Q Consensus 101 ~~~~l~~l~afAaGVlL~ 118 (593)
++.....+++|.+.|+++
T Consensus 2 ~p~Rv~gl~~F~~~v~la 19 (37)
T d1vf5c3 2 DPNRVKWMIAFICLVMLA 19 (37)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Done!