Query 007676
Match_columns 593
No_of_seqs 307 out of 2786
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 13:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007676.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007676hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0498 K+-channel ERG and rel 100.0 2.4E-91 5.2E-96 759.7 41.9 493 13-591 64-573 (727)
2 PLN03192 Voltage-dependent pot 100.0 4.9E-70 1.1E-74 629.0 47.4 443 10-564 45-493 (823)
3 KOG0500 Cyclic nucleotide-gate 100.0 6.1E-69 1.3E-73 542.9 35.8 421 33-563 5-429 (536)
4 KOG0501 K+-channel KCNQ [Inorg 100.0 1.3E-67 2.9E-72 537.3 22.9 462 13-570 204-672 (971)
5 KOG0499 Cyclic nucleotide-gate 100.0 1.2E-61 2.7E-66 495.5 28.1 426 16-564 217-648 (815)
6 KOG3713 Voltage-gated K+ chann 99.5 3.4E-13 7.5E-18 139.6 17.4 64 300-363 380-443 (477)
7 PRK09392 ftrB transcriptional 99.4 2.9E-12 6.3E-17 127.0 13.8 121 421-564 6-126 (236)
8 PF00520 Ion_trans: Ion transp 99.4 2.8E-12 6.2E-17 122.6 12.1 191 70-346 1-200 (200)
9 cd00038 CAP_ED effector domain 99.3 2E-11 4.3E-16 105.3 11.9 113 429-563 1-113 (115)
10 PRK11753 DNA-binding transcrip 99.3 5.3E-11 1.1E-15 115.7 15.6 112 431-563 6-117 (211)
11 PF00027 cNMP_binding: Cyclic 99.3 2.1E-11 4.5E-16 101.2 10.1 91 447-559 1-91 (91)
12 KOG1545 Voltage-gated shaker-l 99.3 6.6E-12 1.4E-16 123.8 7.2 49 299-347 395-443 (507)
13 KOG0614 cGMP-dependent protein 99.2 2E-11 4.3E-16 126.2 9.5 127 417-564 267-394 (732)
14 KOG0614 cGMP-dependent protein 99.2 7.9E-12 1.7E-16 129.1 5.6 119 414-559 146-264 (732)
15 smart00100 cNMP Cyclic nucleot 99.2 1.5E-10 3.2E-15 100.4 12.3 115 429-563 1-115 (120)
16 KOG1113 cAMP-dependent protein 99.2 1.7E-11 3.7E-16 121.7 6.4 110 421-557 121-230 (368)
17 PF07885 Ion_trans_2: Ion chan 99.2 1.9E-10 4.2E-15 93.3 10.4 56 296-351 23-78 (79)
18 PRK11161 fumarate/nitrate redu 99.2 2.7E-10 5.9E-15 112.7 13.0 118 424-564 15-133 (235)
19 PRK10402 DNA-binding transcrip 99.1 3.5E-10 7.6E-15 111.3 12.6 107 436-564 22-128 (226)
20 COG2905 Predicted signal-trans 99.1 4.4E-10 9.5E-15 118.1 12.7 118 421-564 6-123 (610)
21 COG0664 Crp cAMP-binding prote 99.1 1.4E-09 3.1E-14 105.2 14.4 118 425-564 3-120 (214)
22 PLN02868 acyl-CoA thioesterase 99.1 1.5E-09 3.2E-14 116.4 13.6 117 421-562 7-123 (413)
23 KOG1419 Voltage-gated K+ chann 99.1 3.2E-09 6.9E-14 110.7 15.2 90 293-389 265-354 (654)
24 PRK09391 fixK transcriptional 99.0 3.8E-09 8.3E-14 104.2 11.2 101 439-564 32-132 (230)
25 TIGR03697 NtcA_cyano global ni 98.9 9E-09 1.9E-13 98.5 12.0 92 453-564 1-92 (193)
26 KOG1113 cAMP-dependent protein 98.9 3.7E-09 8.1E-14 105.2 7.6 118 417-560 235-352 (368)
27 KOG1420 Ca2+-activated K+ chan 98.8 4.2E-09 9E-14 109.6 4.8 127 296-432 287-418 (1103)
28 PRK13918 CRP/FNR family transc 98.7 9.1E-08 2E-12 92.3 11.8 84 444-550 5-90 (202)
29 KOG4390 Voltage-gated A-type K 98.4 1.9E-08 4.2E-13 100.4 -3.7 53 299-351 358-414 (632)
30 PRK10537 voltage-gated potassi 98.3 1.2E-05 2.7E-10 85.0 15.7 54 297-350 168-221 (393)
31 KOG3684 Ca2+-activated K+ chan 97.9 0.00043 9.3E-09 71.8 16.3 92 294-393 284-375 (489)
32 PF01007 IRK: Inward rectifier 97.9 0.00014 2.9E-09 75.2 12.2 59 296-354 83-143 (336)
33 KOG2968 Predicted esterase of 97.7 4.4E-05 9.5E-10 84.5 6.5 107 436-564 499-605 (1158)
34 KOG1418 Tandem pore domain K+ 97.6 6.9E-05 1.5E-09 80.6 5.4 58 297-354 115-172 (433)
35 PRK11832 putative DNA-binding 97.0 0.022 4.8E-07 54.3 13.9 102 437-564 14-116 (207)
36 PF08412 Ion_trans_N: Ion tran 96.9 0.00066 1.4E-08 53.9 2.5 31 16-46 36-68 (77)
37 KOG2968 Predicted esterase of 96.8 0.0075 1.6E-07 67.5 10.4 105 440-560 110-215 (1158)
38 PF04831 Popeye: Popeye protei 96.7 0.05 1.1E-06 48.8 13.1 116 432-569 14-131 (153)
39 KOG3827 Inward rectifier K+ ch 96.6 0.0092 2E-07 61.0 8.8 58 296-353 111-170 (400)
40 KOG4404 Tandem pore domain K+ 96.5 0.0032 6.9E-08 62.8 4.4 59 298-356 187-253 (350)
41 KOG4404 Tandem pore domain K+ 96.4 0.0011 2.4E-08 66.0 0.5 53 298-350 81-133 (350)
42 KOG1418 Tandem pore domain K+ 95.3 0.0052 1.1E-07 66.0 0.5 48 296-343 241-296 (433)
43 KOG3542 cAMP-regulated guanine 95.3 0.059 1.3E-06 58.5 8.1 111 421-558 280-392 (1283)
44 KOG2302 T-type voltage-gated C 94.1 1.3 2.9E-05 50.6 15.1 72 8-88 1095-1178(1956)
45 KOG3193 K+ channel subunit [In 93.2 0.39 8.3E-06 51.2 8.6 27 299-325 219-245 (1087)
46 KOG3542 cAMP-regulated guanine 91.2 0.33 7.2E-06 53.0 5.4 89 423-546 38-126 (1283)
47 COG4709 Predicted membrane pro 89.2 1.8 3.9E-05 40.3 7.7 76 361-438 4-83 (195)
48 PLN03223 Polycystin cation cha 85.4 33 0.00071 41.7 16.6 23 66-88 1213-1235(1634)
49 PF08006 DUF1700: Protein of u 80.5 8.9 0.00019 36.1 8.4 57 361-419 4-64 (181)
50 KOG2301 Voltage-gated Ca2+ cha 75.6 9.3 0.0002 47.6 8.5 84 296-380 1050-1143(1592)
51 KOG2301 Voltage-gated Ca2+ cha 70.2 35 0.00077 42.7 11.6 83 66-190 473-556 (1592)
52 PF07883 Cupin_2: Cupin domain 68.3 7 0.00015 29.9 3.6 31 448-478 3-34 (71)
53 PF14377 DUF4414: Domain of un 64.4 15 0.00032 31.4 5.1 44 375-418 52-105 (108)
54 PF00060 Lig_chan: Ligand-gate 64.4 9.4 0.0002 34.1 4.2 75 294-374 41-115 (148)
55 PF13314 DUF4083: Domain of un 53.9 77 0.0017 23.6 6.4 39 332-373 16-57 (58)
56 KOG3676 Ca2+-permeable cation 53.6 4.1E+02 0.0089 30.8 15.6 75 310-385 601-682 (782)
57 PF00612 IQ: IQ calmodulin-bin 51.3 23 0.0005 20.3 2.9 18 573-590 2-19 (21)
58 PF02037 SAP: SAP domain; Int 46.4 34 0.00074 22.6 3.4 26 363-388 5-35 (35)
59 PRK13290 ectC L-ectoine syntha 45.3 1.2E+02 0.0025 26.7 7.7 68 446-545 38-106 (125)
60 PF07697 7TMR-HDED: 7TM-HD ext 44.9 82 0.0018 30.2 7.5 59 405-464 146-207 (222)
61 COG0662 {ManC} Mannose-6-phosp 44.6 50 0.0011 28.9 5.4 35 444-478 37-72 (127)
62 PF05899 Cupin_3: Protein of u 42.7 41 0.00088 26.4 4.0 30 464-511 26-55 (74)
63 PF14377 DUF4414: Domain of un 40.8 73 0.0016 27.1 5.6 49 375-423 8-69 (108)
64 PF10011 DUF2254: Predicted me 40.7 1.3E+02 0.0027 31.9 8.6 60 294-353 97-156 (371)
65 smart00015 IQ Short calmodulin 34.3 56 0.0012 19.8 2.8 19 572-590 3-21 (26)
66 COG1917 Uncharacterized conser 34.0 98 0.0021 27.0 5.6 50 445-513 45-95 (131)
67 KOG1054 Glutamate-gated AMPA-t 28.9 59 0.0013 35.9 3.7 51 300-351 598-648 (897)
68 COG5559 Uncharacterized conser 27.8 59 0.0013 24.2 2.4 22 373-394 8-29 (65)
69 PF13623 SurA_N_2: SurA N-term 27.0 1.5E+02 0.0033 26.7 5.6 44 329-372 10-66 (145)
70 COG3718 IolB Uncharacterized e 26.5 2.6E+02 0.0056 27.4 7.1 34 445-478 31-64 (270)
71 TIGR00933 2a38 potassium uptak 26.3 64 0.0014 34.3 3.6 43 296-338 230-274 (390)
72 TIGR03037 anthran_nbaC 3-hydro 25.3 1.8E+02 0.0039 26.7 5.7 39 457-511 43-81 (159)
73 PF01484 Col_cuticle_N: Nemato 25.2 2.6E+02 0.0056 19.9 6.4 40 327-366 9-48 (53)
74 KOG3300 NADH:ubiquinone oxidor 25.0 2.1E+02 0.0046 25.2 5.6 44 364-408 62-105 (146)
75 PF14841 FliG_M: FliG middle d 24.3 1.3E+02 0.0027 24.0 4.0 39 401-447 30-68 (79)
76 PF08763 Ca_chan_IQ: Voltage g 23.5 98 0.0021 20.6 2.6 21 571-591 8-28 (35)
77 COG3837 Uncharacterized conser 23.3 1E+02 0.0023 28.1 3.7 47 447-512 46-94 (161)
78 smart00513 SAP Putative DNA-bi 23.2 88 0.0019 20.5 2.5 25 364-388 6-35 (35)
79 PRK06771 hypothetical protein; 23.1 4.4E+02 0.0095 21.9 7.4 38 339-376 14-51 (93)
80 PF00520 Ion_trans: Ion transp 22.3 3.2E+02 0.007 24.8 7.3 23 204-226 100-122 (200)
81 PF11699 CENP-C_C: Mif2/CENP-C 22.0 1E+02 0.0022 25.1 3.1 14 465-478 35-48 (85)
82 KOG0498 K+-channel ERG and rel 21.9 7.5E+02 0.016 28.7 11.0 41 405-445 371-416 (727)
83 PHA03029 hypothetical protein; 21.8 4E+02 0.0087 20.9 6.4 39 321-359 2-40 (92)
84 PF07077 DUF1345: Protein of u 21.7 1.9E+02 0.0041 27.2 5.3 49 296-344 131-179 (180)
85 PF10047 DUF2281: Protein of u 21.1 77 0.0017 24.4 2.1 22 374-395 10-31 (66)
86 smart00835 Cupin_1 Cupin. This 20.7 1.9E+02 0.0041 25.8 5.0 55 444-511 31-86 (146)
87 PF13867 SAP30_Sin3_bdg: Sin3 20.1 2.1E+02 0.0045 20.9 4.1 37 364-405 3-46 (53)
No 1
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-91 Score=759.73 Aligned_cols=493 Identities=34% Similarity=0.613 Sum_probs=429.6
Q ss_pred cccccccCCCCCC--ChhHHHHHHHHHHHHHhhhhhheeeecCCCcceecCccchhhHHHHHHHHHHHHHHHhhheeeee
Q 007676 13 EVRREIVDPQQPH--PWKFIWFMLCATAVSLDFWFFYIPVVNDDRKCISLDAKLAITACLLRFLFDFLYSIPIALQMLTD 90 (593)
Q Consensus 13 ~~~~~ii~P~s~~--~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~ 90 (593)
...+.||+|.|++ .||.+++++|+|+++++|++++++...+...| +|......+.++|.++|++|++||+++|+||
T Consensus 64 ~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frta 141 (727)
T KOG0498|consen 64 KSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTA 141 (727)
T ss_pred cccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEE
Confidence 3446799999999 99999999999999999999999999888888 7888888999999999999999999999999
Q ss_pred EEecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhccchhhhHHhhcchhhhhhhhcccC----C---cc
Q 007676 91 LVSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSPSLLVDLLAIFPLPQLVILFIIPQ----M---RG 163 (593)
Q Consensus 91 y~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~~F~~Dlls~lP~~~~~~~~~~~~----~---~~ 163 (593)
|+++.+ .++|.||++ | |+||+|+||++|++|++|+++++.+..+.. . ..
T Consensus 142 yv~~~s------~elV~dpk~--------------I----A~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l 197 (727)
T KOG0498|consen 142 YVDPSS------YELVDDPKK--------------I----AKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTIL 197 (727)
T ss_pred EECCCC------ceeeeCHHH--------------H----HHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHH
Confidence 999753 349999999 9 999999999999999999999988765311 0 11
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHhHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhccCCCC
Q 007676 164 SKILDAMDLLKYSVFIQFVPRIVRIYPWSVAKLAEATWVIAAFNLLLYMFAGHVFGALWYFSAIERETECWKKACMNDTG 243 (593)
Q Consensus 164 ~~~l~~~rlLrl~rl~~~~~rl~r~~~~~~~~~~~~~~~~~~~~Ll~~~l~~H~~aC~wy~i~~~~~~~~~~~~~~~~~~ 243 (593)
..++.+.||+|+.|+++++.|+.+. .++..+++|...+.+|+++++++||.||+||++|.++.+.||+++
T Consensus 198 ~~il~~~rL~Rl~Rv~~l~~r~~k~----~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~------ 267 (727)
T KOG0498|consen 198 VGILLLQRLPRLRRVIPLFARLEKD----TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA------ 267 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc------
Confidence 2345555666666666555555553 355667888887788889999999999999999998887787543
Q ss_pred CCCccccCCCCCCccccccccCCCcCCCCCCCccchhhhhhhcCccccCChhhHHHHHHHHHhHhhccccCCCcccCchh
Q 007676 244 CNRGSFDCDDCIGDYKFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSW 323 (593)
Q Consensus 244 c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~ 323 (593)
+|+...+...++.+..+++|+ .+++.+|++|+||+++||||+|||+++|+|..
T Consensus 268 ---------------tw~~~l~~~~~~~~~~~~fg~------------~s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~ 320 (727)
T KOG0498|consen 268 ---------------TWLGSLGRLLSCYNLSFTFGI------------YSLALKYVYALYWGLSTLSTVGYGLVHANNMG 320 (727)
T ss_pred ---------------ccccccccccccCcccccccc------------hhHHHHHHHHHHHHhhHhhhccCCccCCCCcH
Confidence 455432211112333355664 45667999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHH
Q 007676 324 ENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVEST 403 (593)
Q Consensus 324 E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~i 403 (593)
|++|+|++|++|.++||++||||++++++++.+..+|+.|+.++++||++++||++||+||++|++|+|..++|.||+++
T Consensus 321 E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~l 400 (727)
T KOG0498|consen 321 EKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEEL 400 (727)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeecc
Q 007676 404 LSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERI 483 (593)
Q Consensus 404 l~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~ 483 (593)
|++||..||++|+.|+|.++++++|+|+++|++++.+|+.++++..|+|||+|++|||+.++||||++|.+++.. .
T Consensus 401 L~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~----~ 476 (727)
T KOG0498|consen 401 LQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESIT----T 476 (727)
T ss_pred HHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEE----c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 4
Q ss_pred CCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007676 484 NGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 484 ~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
+|+ .....+.|++|++|||.-+++++.. |+++||+|++.|+++.|+++||..++++||+++++
T Consensus 477 ~~g----------~~~~~~~L~~Gd~~GeEl~~~~~~~-------p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~ 539 (727)
T KOG0498|consen 477 DGG----------GFFVVAILGPGDFFGEELLTWCLDL-------PQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSK 539 (727)
T ss_pred cCC----------ceEEEEEecCCCccchHHHHHHhcC-------CCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHH
Confidence 543 1246789999999996666677631 45899999999999999999999999999999988
Q ss_pred hhhhhHH--------HHHHHHHHHHHHHHHHhhhhh
Q 007676 564 KLNLKHS--------NIQAACVIQLAWRRHRTRRKS 591 (593)
Q Consensus 564 ~~~l~~~--------r~~~~~~~q~~~~r~~~~~~~ 591 (593)
. ++|+ |.|+++.+|.+|+||.+|+..
T Consensus 540 ~--l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~ 573 (727)
T KOG0498|consen 540 F--LQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGE 573 (727)
T ss_pred H--HHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhcc
Confidence 8 7764 999999999999999999854
No 2
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=100.00 E-value=4.9e-70 Score=628.96 Aligned_cols=443 Identities=17% Similarity=0.290 Sum_probs=364.7
Q ss_pred ccccccccccCCCCCC--ChhHHHHHHHHHHHHHhhhhhheeeecCCCcceecCccchhhHHHHHHHHHHHHHHHhhhee
Q 007676 10 GELEVRREIVDPQQPH--PWKFIWFMLCATAVSLDFWFFYIPVVNDDRKCISLDAKLAITACLLRFLFDFLYSIPIALQM 87 (593)
Q Consensus 10 ~~~~~~~~ii~P~s~~--~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f 87 (593)
...+.++.+|+|.+++ +||.+++++++|+++++|+.+.+ . +......+.++|.++|++|++||+++|
T Consensus 45 ~~~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F--~---------~~~~~~~~~~~d~i~~~~F~iDi~l~f 113 (823)
T PLN03192 45 NHIGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAF--L---------NASPKRGLEIADNVVDLFFAVDIVLTF 113 (823)
T ss_pred CccccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHe--e---------CCCCCCCeeeHHHHHHHHHHHHHHhhe
Confidence 3445668899999998 99999999999999999999533 1 111123467899999999999999999
Q ss_pred eeeEEecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhccchhhhHHhhcchhhhhhhhcccCCc---ch
Q 007676 88 LTDLVSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSPSLLVDLLAIFPLPQLVILFIIPQMR---GS 164 (593)
Q Consensus 88 ~t~y~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~~F~~Dlls~lP~~~~~~~~~~~~~~---~~ 164 (593)
+|+|+++. +|. +|+||++ | ++||+|+||++|++|++|++++..... .... ..
T Consensus 114 ~~ay~d~~-----~~~-lV~d~~~--------------I----~~~Yl~~~f~~Dlis~lP~~~i~~~~~-~~~~~~~~~ 168 (823)
T PLN03192 114 FVAYIDPR-----TQL-LVRDRKK--------------I----AVRYLSTWFLMDVASTIPFQALAYLIT-GTVKLNLSY 168 (823)
T ss_pred eEEEEeCC-----CcE-EEeCHHH--------------H----HHHHHHHhHHHHHHHHhHHHHHHHHhc-CCccchHHH
Confidence 99999853 567 9999999 9 999999999999999999998754332 1111 12
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHhHhcchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhHHHHhhccCCCC
Q 007676 165 KILDAMDLLKYSVFIQFVPRIVRIYPWSVAKLAEATWVIAAFNLLL-YMFAGHVFGALWYFSAIERETECWKKACMNDTG 243 (593)
Q Consensus 165 ~~l~~~rlLrl~rl~~~~~rl~r~~~~~~~~~~~~~~~~~~~~Ll~-~~l~~H~~aC~wy~i~~~~~~~~~~~~~~~~~~ 243 (593)
..++++|++|+.|+.+++.++.+..+. ...+..+.+++. .++++||+||+||+++..
T Consensus 169 ~~l~llrl~Rl~ri~~~~~~le~~~~~-------~~~~~~~~kli~~~l~~~H~~aC~~y~i~~~--------------- 226 (823)
T PLN03192 169 SLLGLLRFWRLRRVKQLFTRLEKDIRF-------SYFWIRCARLLSVTLFLVHCAGCLYYLIADR--------------- 226 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------
Confidence 234444444444444444333332211 112234555554 446899999999999831
Q ss_pred CCCccccCCCCCCccccccccCCCcCCCCCCCccchhhhhhhcCccccCChhhHHHHHHHHHhHhhccccCCCcccCchh
Q 007676 244 CNRGSFDCDDCIGDYKFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSW 323 (593)
Q Consensus 244 c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~ 323 (593)
+ +..+.+|+....+ + ..+.+++.+|+.|+|||++|||||||||++|.|+.
T Consensus 227 ----~-----~~~~~~Wi~~~~~---------~------------~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~ 276 (823)
T PLN03192 227 ----Y-----PHQGKTWIGAVIP---------N------------FRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTI 276 (823)
T ss_pred ----c-----CCCCCchHHHhhh---------c------------cccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccc
Confidence 0 1235689864211 1 23678999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHH
Q 007676 324 ENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVEST 403 (593)
Q Consensus 324 E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~i 403 (593)
|+++++++|++|+++|||++|+|++++.+.+++..+|+++|+.+++||+++++|++||+||++|+++.|+. ...+++++
T Consensus 277 E~i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~-~~~~~~~~ 355 (823)
T PLN03192 277 EMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKA-ESLNQQQL 355 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhh-ccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999975 45788999
Q ss_pred HhhCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeecc
Q 007676 404 LSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERI 483 (593)
Q Consensus 404 l~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~ 483 (593)
++.||++||.++..+++.+.++++++|++++++++.+|+..++++.|+|||.|+.+||.++++|||.+|.|++.. .
T Consensus 356 l~~Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~----~ 431 (823)
T PLN03192 356 IDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIID----S 431 (823)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEE----e
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987 2
Q ss_pred CCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007676 484 NGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 484 ~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
+++ ++.++..+++|++|||.+++.+ .++.++++|.+.|+++.|++++|.++++++|+....
T Consensus 432 ~~~----------~e~~l~~l~~Gd~FGE~~~l~~---------~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~ 492 (823)
T PLN03192 432 EGE----------KERVVGTLGCGDIFGEVGALCC---------RPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVV 492 (823)
T ss_pred cCC----------cceeeEEccCCCEecchHHhcC---------CCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHH
Confidence 322 1257889999999999988532 167899999999999999999999999999997654
Q ss_pred h
Q 007676 564 K 564 (593)
Q Consensus 564 ~ 564 (593)
.
T Consensus 493 i 493 (823)
T PLN03192 493 I 493 (823)
T ss_pred H
Confidence 4
No 3
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-69 Score=542.94 Aligned_cols=421 Identities=21% Similarity=0.289 Sum_probs=356.3
Q ss_pred HHHHHHHHHhhhhhheeeecCCCcceecCccchhhHHHHHHHHHHHHHHHhhheeeeeEEecccccccCCceeEeecchh
Q 007676 33 MLCATAVSLDFWFFYIPVVNDDRKCISLDAKLAITACLLRFLFDFLYSIPIALQMLTDLVSTDYVSYGENDSYVTHTLRM 112 (593)
Q Consensus 33 ~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~g~~~v~~~~~~ 112 (593)
+.++|..++++.++.|+-+ .+.....|..+|++.|++|++|++++.+|+|. ++|. +|+|..+
T Consensus 5 ~~vLYN~~~li~r~~F~di---------~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyl-------eqGl-lV~~~~K- 66 (536)
T KOG0500|consen 5 LGVLYNMIVLIVRAAFDDI---------QSSYLENWLPLDYLFDFVYLLDIIVRSRTGYL-------EQGL-LVKDTSK- 66 (536)
T ss_pred EehHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------hcCe-eehhhHH-
Confidence 4567888888886433322 22234578999999999999999999999999 4899 9999999
Q ss_pred hhhccCCCCCCcccchHHHhhhhcc-chhhhHHhhcchhhhhhhhcccCCcchhHHHHHHHHHHHHHHHhHHHHHhHhcc
Q 007676 113 IVDLVGGNNSRRNISHIRVCEYLSP-SLLVDLLAIFPLPQLVILFIIPQMRGSKILDAMDLLKYSVFIQFVPRIVRIYPW 191 (593)
Q Consensus 113 ~~~~~~~~~~~~~I~~~~~~~Yl~~-~F~~Dlls~lP~~~~~~~~~~~~~~~~~~l~~~rlLrl~rl~~~~~rl~r~~~~ 191 (593)
. ++||.++ .|.+|++|.+|+|++..+.. .....+++|++|+.|++.++.|-.+
T Consensus 67 -------------l----~~hY~~s~~f~lD~l~liP~D~l~~~~~-----~~~~~r~nRllk~yRl~~F~~rTet---- 120 (536)
T KOG0500|consen 67 -------------L----RKHYVHSTQFKLDVLSLIPLDLLLFKDG-----SASLERLNRLLKIYRLFEFFDRTET---- 120 (536)
T ss_pred -------------H----HHHHHHhhhhhhhhhhhcchhHHhhcCC-----cchHHHHHHHHHHHHHHHHHHHhcc----
Confidence 9 9999998 89999999999999887542 2356678888888766665443322
Q ss_pred hhhhHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCccccCCCCCCccccccccCCCc
Q 007676 192 SVAKLAEATWV--IAAFNLLLYM-FAGHVFGALWYFSAIERETECWKKACMNDTGCNRGSFDCDDCIGDYKFLDGVCPTK 268 (593)
Q Consensus 192 ~~~~~~~~~~~--~~~~~Ll~~~-l~~H~~aC~wy~i~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~ 268 (593)
++.+. .++.+|+.++ +++||.||+||+++.. .|.+.++|....
T Consensus 121 ------rT~~Pn~fri~~lv~~~~ilfHWNaClYf~iS~~------------------------~g~~~d~wvY~~---- 166 (536)
T KOG0500|consen 121 ------RTTYPNAFRISKLVHYCLILFHWNACLYFLISKA------------------------IGFTTDDWVYPK---- 166 (536)
T ss_pred ------ccCCchHHHHHHHHHHHHHHHHHhhHHHHhhhHh------------------------cCccccccccCC----
Confidence 22222 3456776554 5899999999999852 134567798642
Q ss_pred CCCCCCCccchhhhhhhcCccccCChhhHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007676 269 IRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQM 348 (593)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~ 348 (593)
-.++.++ . ....+...+|+.|+||+..||||+|-- .+|.++.|.+|.|+-.++|+++||.|+|+|++
T Consensus 167 ---i~d~~~~---~------c~~~n~~ReY~~S~YWStLTlTTiGe~-P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGs 233 (536)
T KOG0500|consen 167 ---INDPEFA---T------CDAGNLTREYLYSLYWSTLTLTTIGEQ-PPPVTSSEYAFVIVDTLIGVLIFATIVGNVGS 233 (536)
T ss_pred ---ccCcccc---c------cchhHHHHHHHHHHHHHhhhhhhccCC-CCCCcCchhhHHHHHHHHHHHHHhhhhccHhH
Confidence 1122221 0 112457899999999999999999884 46788999999999999999999999999999
Q ss_pred HHHhhchhHHHHHHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCH
Q 007676 349 YLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVE 428 (593)
Q Consensus 349 i~~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~ 428 (593)
+++++++.+.+|+++||.+++||+.|++|+.||.||.+||+|.|.+.+..||+++++.||+.|+.||+.+++.+.|++++
T Consensus 234 mVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~ 313 (536)
T KOG0500|consen 234 MVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVR 313 (536)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCC
Q 007676 429 EFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGD 508 (593)
Q Consensus 429 ~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~ 508 (593)
+|+.+.+.++.+|+.++++++|.|||+||++||.+.+||+|.+|.+++.. +||+ ++...+++|+
T Consensus 314 iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~----dDg~------------t~~~~L~~G~ 377 (536)
T KOG0500|consen 314 IFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA----DDGV------------TVFVTLKAGS 377 (536)
T ss_pred HHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe----cCCc------------EEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999 7887 7889999999
Q ss_pred eecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007676 509 FWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 509 ~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
+|||+++++- . +.-+..+|++++++++++++++|+++|+.+.+++||+-+..
T Consensus 378 ~FGEisIlni-~--g~~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~ 429 (536)
T KOG0500|consen 378 VFGEISILNI-K--GNKNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKR 429 (536)
T ss_pred eeeeeEEEEE-c--CcccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHH
Confidence 9999998642 2 22244589999999999999999999999999999996543
No 4
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-67 Score=537.29 Aligned_cols=462 Identities=16% Similarity=0.260 Sum_probs=372.9
Q ss_pred cccccccCCCCCC--ChhHHHHHHHHHHHHHhhhhhheeeecCCCcceecCccchhhHHHHHHHHHHHHHHHhhheeeee
Q 007676 13 EVRREIVDPQQPH--PWKFIWFMLCATAVSLDFWFFYIPVVNDDRKCISLDAKLAITACLLRFLFDFLYSIPIALQMLTD 90 (593)
Q Consensus 13 ~~~~~ii~P~s~~--~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~ 90 (593)
+--|+||..++.| +||++++++.+|+++++|+.+ +|-+.. .....|.++|.++|++|++||+|||+|.
T Consensus 204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNv--aFKnk~--------~~~vs~lvvDSiVDVIF~vDIvLNFHTT 273 (971)
T KOG0501|consen 204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNV--AFKNKQ--------RNNVSWLVVDSIVDVIFFVDIVLNFHTT 273 (971)
T ss_pred CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeee--eecccc--------cCceeEEEecchhhhhhhhhhhhhccee
Confidence 3447789999999 999999999999999999984 222211 1124688999999999999999999999
Q ss_pred EEecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhccchhhhHHhhcchhhhhhhhcccCCc--chhHHH
Q 007676 91 LVSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSPSLLVDLLAIFPLPQLVILFIIPQMR--GSKILD 168 (593)
Q Consensus 91 y~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~~F~~Dlls~lP~~~~~~~~~~~~~~--~~~~l~ 168 (593)
|+.+ .|+ +|.||+. | +.||+|+||++|++||+|+|.+..+-...... ..+.++
T Consensus 274 FVGP------gGE-VvsdPkv--------------I----RmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLK 328 (971)
T KOG0501|consen 274 FVGP------GGE-VVSDPKV--------------I----RMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALK 328 (971)
T ss_pred eecC------CCc-eecChhH--------------H----hHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHH
Confidence 9986 588 9999999 9 99999999999999999999987654332211 124456
Q ss_pred HHHHHHHHHHHHhHHHHHhHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCcc
Q 007676 169 AMDLLKYSVFIQFVPRIVRIYPWSVAKLAEATWVIAAFNLLLYMFAGHVFGALWYFSAIERETECWKKACMNDTGCNRGS 248 (593)
Q Consensus 169 ~~rlLrl~rl~~~~~rl~r~~~~~~~~~~~~~~~~~~~~Ll~~~l~~H~~aC~wy~i~~~~~~~~~~~~~~~~~~c~~~~ 248 (593)
..||||+=|+.|.+.+.++ ......++.+..+.+++||+||+||.||..+- .
T Consensus 329 VVRLLRLGRVaRKLD~YlE-----------YGAA~LvLLlC~y~lvAHWlACiWysIGd~ev-----------------~ 380 (971)
T KOG0501|consen 329 VVRLLRLGRVARKLDHYLE-----------YGAAVLVLLLCVYGLVAHWLACIWYSIGDYEV-----------------R 380 (971)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHhheeccchhe-----------------e
Confidence 6666666555443322221 11111233344677899999999999995211 1
Q ss_pred ccCCCCCCccccccccCCCcCCCCCCCccchhhhhhh-cCc-cccCChhhHHHHHHHHHhHhhccccCCCcccCchhhHH
Q 007676 249 FDCDDCIGDYKFLDGVCPTKIRNTSIHDFGIFQDALQ-SGI-VEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENF 326 (593)
Q Consensus 249 ~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i 326 (593)
...++..-.++|+-..... ....++|. ++ .|. ...++--..|+.|+||.++.|||||+|+|.|.|+.|++
T Consensus 381 ~~~~n~i~~dsWL~kLa~~---~~tpY~~~-----~s~~~~~~gGPSr~S~YissLYfTMt~mttvGFGNiA~~TD~EKi 452 (971)
T KOG0501|consen 381 DEMDNTIQPDSWLWKLAND---IGTPYNYN-----LSNKGTLVGGPSRTSAYISSLYFTMTCMTTVGFGNIAPNTDNEKI 452 (971)
T ss_pred cccccccccchHHHHHHhh---cCCCceec-----cCCCceeecCCcccceehhhhhhhhhhhhcccccccCCCccHHHH
Confidence 1122234467887542211 11112221 00 011 12466678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHhh
Q 007676 327 FVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSS 406 (593)
Q Consensus 327 ~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~ 406 (593)
|++++|++|+++||-++|+++.|++++.+...+|++.++.+.+||+-.++|++|.+||.+|.--.|..++|.|.+++|+.
T Consensus 453 F~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVSTWaMtkGiDTeKVL~~ 532 (971)
T KOG0501|consen 453 FGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVSTWAMTKGIDTEKVLGY 532 (971)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhcCcCHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCC
Q 007676 407 LPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGS 486 (593)
Q Consensus 407 Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~ 486 (593)
.|..+|.+|..|++++.++..|.|+-.|+.+++.|+..++.....|||.|+..||..|.+.||++|..++.. |++
T Consensus 533 CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQ-----DDE 607 (971)
T KOG0501|consen 533 CPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQ-----DDE 607 (971)
T ss_pred CccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEee-----cCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 433
Q ss_pred ccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhh-hhh
Q 007676 487 ANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGS-TKL 565 (593)
Q Consensus 487 ~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~-~~~ 565 (593)
++++|+.||.||+.. |.-. ....+.++|+|+++|++..|.|+.++++++-|..|++ ..|
T Consensus 608 -------------VVAILGKGDVFGD~F--WK~~-----t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaR 667 (971)
T KOG0501|consen 608 -------------VVAILGKGDVFGDEF--WKEN-----TLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFAR 667 (971)
T ss_pred -------------EEEEeecCccchhHH--hhhh-----hhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhh
Confidence 789999999999873 4211 1225688999999999999999999999999999864 446
Q ss_pred hhhHH
Q 007676 566 NLKHS 570 (593)
Q Consensus 566 ~l~~~ 570 (593)
||.-+
T Consensus 668 Nl~LT 672 (971)
T KOG0501|consen 668 NLTLT 672 (971)
T ss_pred ceeeE
Confidence 55433
No 5
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-61 Score=495.53 Aligned_cols=426 Identities=18% Similarity=0.333 Sum_probs=374.9
Q ss_pred ccccCCCC-CC--ChhHHHHHHHHHHHHHhhhhhheeeecCCCcceecCccchhhHHHHHHHHHHHHHHHhhh-eeeeeE
Q 007676 16 REIVDPQQ-PH--PWKFIWFMLCATAVSLDFWFFYIPVVNDDRKCISLDAKLAITACLLRFLFDFLYSIPIAL-QMLTDL 91 (593)
Q Consensus 16 ~~ii~P~s-~~--~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l-~f~t~y 91 (593)
+..|||.. ++ .|=.+..++..+++|+||++..+|+..++.. --|.+.|+++|+++++||++ +-|..|
T Consensus 217 ~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~---------~~Wli~Dy~cDiIYllDmlf~q~Rl~f 287 (815)
T KOG0499|consen 217 PNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNI---------HYWLIADYICDIIYLLDMLFIQPRLQF 287 (815)
T ss_pred CcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccc---------hhhhhHHHHhhHHHHHHHhhhhhhhee
Confidence 56799999 66 8987777777788899999988888765531 25899999999999999987 777888
Q ss_pred EecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhcc-chhhhHHhhcchhhhhhhhcccCCcchhHHHHH
Q 007676 92 VSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSP-SLLVDLLAIFPLPQLVILFIIPQMRGSKILDAM 170 (593)
Q Consensus 92 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~-~F~~Dlls~lP~~~~~~~~~~~~~~~~~~l~~~ 170 (593)
+- .|. +|+|.+. . ++||+++ .|-+|++|++|+++++..++. ...+|++
T Consensus 288 vr-------gG~-~ik~knd--------------t----rk~Yl~sr~FklDllsiLPldllY~~~G~-----~p~wR~~ 336 (815)
T KOG0499|consen 288 VR-------GGD-IIKDKND--------------T----RKHYLTSRKFKLDLLSILPLDLLYLFFGF-----NPMWRAN 336 (815)
T ss_pred ee-------Cce-EEEechH--------------H----HHHHHHhhhhhhhHHhhhhHHHHHHHhcc-----chhhhhh
Confidence 84 688 9999999 9 9999998 999999999999999886643 3567999
Q ss_pred HHHHHHHHHHhHHHHHhHhcchhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCccc
Q 007676 171 DLLKYSVFIQFVPRIVRIYPWSVAKLAEATWVIAAFNLLLYM-FAGHVFGALWYFSAIERETECWKKACMNDTGCNRGSF 249 (593)
Q Consensus 171 rlLrl~rl~~~~~rl~r~~~~~~~~~~~~~~~~~~~~Ll~~~-l~~H~~aC~wy~i~~~~~~~~~~~~~~~~~~c~~~~~ 249 (593)
|+||..-++.+...|.+++ .+.+..++++.+.+| +++|+.||+||+.+..
T Consensus 337 R~lK~~sF~e~~~~Le~i~--------s~~y~~RV~rT~~YmlyilHinacvYY~~Say--------------------- 387 (815)
T KOG0499|consen 337 RMLKYTSFFEFNHHLESIM--------SKAYIYRVIRTTGYLLYILHINACVYYWASAY--------------------- 387 (815)
T ss_pred hHHHHHHHHHHHHHHHHHh--------cchhhhhhHHHHHHHHHHHhhhHHHHHHHHhh---------------------
Confidence 9999877776655555433 245566777777776 4999999999998731
Q ss_pred cCCCCCCccccccccCCCcCCCCCCCccchhhhhhhcCccccCChhhHHHHHHHHHhHhhccccCCCcccCchhhHHHHH
Q 007676 250 DCDDCIGDYKFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVI 329 (593)
Q Consensus 250 ~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i 329 (593)
+|.+.+-|+.+ .-...|++|+|||+-|++|+|- .-.|+|..|++|..
T Consensus 388 ---qglG~~rWVyd-----------------------------g~Gn~YiRCyyfa~kt~~tiG~-~P~P~~~~E~Vf~~ 434 (815)
T KOG0499|consen 388 ---QGLGTTRWVYD-----------------------------GEGNEYIRCYYFAVKTLITIGG-LPEPQTLFEIVFQL 434 (815)
T ss_pred ---cccccceeEEc-----------------------------CCCCceeeehhhHHHHHHHhcC-CCCcchHHHHHHHH
Confidence 35577889963 1226799999999999999996 55688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHhhCCH
Q 007676 330 LVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPK 409 (593)
Q Consensus 330 ~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~ 409 (593)
+--+.|+++||.+||.|-.++.+.+..+++|+..||..-.||+..++|+++|.||+.+|+|.|..++..||.++++.||.
T Consensus 435 ~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~LP~ 514 (815)
T KOG0499|consen 435 LNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTLPT 514 (815)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccc
Q 007676 410 ELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANT 489 (593)
Q Consensus 410 ~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~ 489 (593)
.||.+++..++..++.++.+|++|+.+.+..++.+++.+.|.|||+||++||++.+||+|..|+|+|... ++|.
T Consensus 515 klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGG---p~~~--- 588 (815)
T KOG0499|consen 515 KLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGG---PDGT--- 588 (815)
T ss_pred hheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEecC---CCCC---
Confidence 9999999999999999999999999999999999999999999999999999999999999999999982 3443
Q ss_pred cccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 490 DYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 490 ~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+++.+|++|+.|||++|+ .++...+|+++|+|.++|.|++|+++|+.+++..||+-+..+
T Consensus 589 ---------~Vl~tL~~GsVFGEISLL------aigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iL 648 (815)
T KOG0499|consen 589 ---------KVLVTLKAGSVFGEISLL------AIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRIL 648 (815)
T ss_pred ---------EEEEEecccceeeeeeee------eecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHH
Confidence 799999999999999986 344445899999999999999999999999999999976655
No 6
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=99.52 E-value=3.4e-13 Score=139.60 Aligned_cols=64 Identities=14% Similarity=0.237 Sum_probs=54.2
Q ss_pred HHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH
Q 007676 300 HCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVR 363 (593)
Q Consensus 300 ~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~ 363 (593)
.+++||++|||||||||++|.|...++++..+.+.|+++.|+=|..|.+=++...+..++.++.
T Consensus 380 a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~~~ 443 (477)
T KOG3713|consen 380 AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKAREKA 443 (477)
T ss_pred chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999999999988877777666555444444333
No 7
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=99.40 E-value=2.9e-12 Score=126.97 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=106.1
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007676 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++.+++|+.++++.++.+....+.+.|.+|+.|+++||.++.+|+|.+|.|+++.. .+|+ ...
T Consensus 6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~---~~~~-----------~~~ 71 (236)
T PRK09392 6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSAS---SQDR-----------ETT 71 (236)
T ss_pred HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEc---CCCc-----------eEE
Confidence 35788999999999999999999999999999999999999999999999999999972 2222 246
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+.+|++||+.+++. ..++..+++|.++|+++.|++++|.+++.++|.+....
T Consensus 72 i~~~~~g~~~g~~~~~~---------~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~ 126 (236)
T PRK09392 72 LAILRPVSTFILAAVVL---------DAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAV 126 (236)
T ss_pred EEEeCCCchhhhHHHhC---------CCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 78899999999987642 12578899999999999999999999999999997665
No 8
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=99.38 E-value=2.8e-12 Score=122.61 Aligned_cols=191 Identities=17% Similarity=0.245 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHhhheeeeeEEecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhcc-chhhhHHhhcc
Q 007676 70 LLRFLFDFLYSIPIALQMLTDLVSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSP-SLLVDLLAIFP 148 (593)
Q Consensus 70 ~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~-~F~~Dlls~lP 148 (593)
++|.+.+++|.+|+++++.+. |- . +++|+++ |.++|+++++|
T Consensus 1 ~~~~~~~~~f~~e~~l~~~~~-----------~~----------------------~----~~~y~~~~~~~~d~~~~~~ 43 (200)
T PF00520_consen 1 ILEIIFDVIFILEIVLRFFAL-----------GF----------------------K----RRRYFRSWWNWFDFISVIP 43 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC-----------CC----------------------G-----GCCCCSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHh-----------cc----------------------H----HHHHhcChhhccccccccc
Confidence 468899999999999999843 22 2 4678888 78899999999
Q ss_pred hhhhhhhhcccCCcchhHHHHHHHHHHHHHHHhHHHHHhHhcchhhhHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 007676 149 LPQLVILFIIPQMRGSKILDAMDLLKYSVFIQFVPRIVRIYPWSVAKLAE-ATWVIAAFNLL-LYMFAGHVFGALWYFSA 226 (593)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~rlLrl~rl~~~~~rl~r~~~~~~~~~~~-~~~~~~~~~Ll-~~~l~~H~~aC~wy~i~ 226 (593)
..........+..+....++..|++|+.|++++ .+..+........ ..-...+.+++ .++++.|++||+++.+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf 119 (200)
T PF00520_consen 44 SIVSVILRSYGSASAQSLLRIFRLLRLLRLLRL----LRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLF 119 (200)
T ss_dssp HCCHHCCHCSS--HHCHCHHHHHHHHHHHHHHH----HHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccceEEEEEeecccccccc----ccccccccccccccccccccccccccccccccccccchhheec
Confidence 965443221111000112344444444333322 2222210000000 01111233333 44568999999999887
Q ss_pred hhhhhHHHHhhccCCCCCCCccccCCCCCCccccccccCCCcCCCCCCCccchhhhhhhcCccccCChhhHHHHHHHHHh
Q 007676 227 IERETECWKKACMNDTGCNRGSFDCDDCIGDYKFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGL 306 (593)
Q Consensus 227 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Yl~slYwa~ 306 (593)
......|+ ..++-. .+. ....+..+.|..|+||++
T Consensus 120 ~~~~~~~~----------------------~~~~~~--------~~~---------------~~~~~~f~~~~~s~~~~~ 154 (200)
T PF00520_consen 120 GGSDNSCC----------------------DPTWDS--------END---------------IYGYENFDSFGESLYWLF 154 (200)
T ss_dssp TTTS-----------------------------SS---------------------------SSTHHHHSSHHHHHHHHH
T ss_pred cccccccc----------------------cccccc--------ccc---------------cccccccccccccccccc
Confidence 42110000 000000 000 113355678999999999
Q ss_pred HhhccccCCCcccC-----chhhHHHH-HHHHHHHHHHHHHHHHHH
Q 007676 307 RNLSCIGQNLQTSS-----NSWENFFV-ILVTICGLLLLLFLFGNM 346 (593)
Q Consensus 307 ~TmtTvGyGdi~p~-----~~~E~i~~-i~~mi~G~~~~a~iig~i 346 (593)
.++||.|+||+.+. +..+.++. ++..+.+.++++.++|.|
T Consensus 155 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 155 QTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 99999999999886 88999999 555566668888888865
No 9
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=99.31 E-value=2e-11 Score=105.31 Aligned_cols=113 Identities=24% Similarity=0.345 Sum_probs=97.0
Q ss_pred hhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCC
Q 007676 429 EFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGD 508 (593)
Q Consensus 429 ~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~ 508 (593)
+|..++++.+..++..++...+.+|+.|+.+|+..+.+|+|.+|.+.+.... .+|. ...+..+.+|+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~--~~g~-----------~~~~~~~~~g~ 67 (115)
T cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLD--EDGR-----------EQIVGFLGPGD 67 (115)
T ss_pred CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEEC--CCCc-----------EEEEEecCCcc
Confidence 4678999999999999999999999999999999999999999999999831 2322 24678889999
Q ss_pred eecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007676 509 FWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 509 ~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
+||+..++. ..++..+++|.++|.++.|++++|.++++++|++...
T Consensus 68 ~~g~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (115)
T cd00038 68 LFGELALLG---------NGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARR 113 (115)
T ss_pred CcChHHHhc---------CCCCCceEEEcCceEEEEEeHHHHHHHHHHCcHhHHh
Confidence 999987641 1256788999999999999999999999999998654
No 10
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=99.30 E-value=5.3e-11 Score=115.71 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=95.7
Q ss_pred hcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCee
Q 007676 431 KKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFW 510 (593)
Q Consensus 431 ~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~F 510 (593)
+.+|++.++.++..++...|.+|+.|+.+|+.++.+|+|.+|.++++.. ..+|. ...+..+++|++|
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~--~~~g~-----------~~~~~~~~~g~~~ 72 (211)
T PRK11753 6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIK--DEEGK-----------EMILSYLNQGDFI 72 (211)
T ss_pred CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEE--CCCCC-----------EEEEEEcCCCCEE
Confidence 4588999999999999999999999999999999999999999999972 12343 2577889999999
Q ss_pred cchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007676 511 GEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 511 Ge~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
|+..++. ..+++..+++|.++|+++.|++++|.++++++|++...
T Consensus 73 g~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~ 117 (211)
T PRK11753 73 GELGLFE--------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMA 117 (211)
T ss_pred eehhhcc--------CCCCceEEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHH
Confidence 9987642 11246788999999999999999999999999998644
No 11
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=99.29 E-value=2.1e-11 Score=101.17 Aligned_cols=91 Identities=25% Similarity=0.285 Sum_probs=77.4
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCC
Q 007676 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSN 526 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~ 526 (593)
++.|.+|+.|+++|+..+.+|||.+|.+.+... +.. ++...+..+++|++||+.+++...
T Consensus 1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~----~~~---------~~~~~~~~~~~g~~~g~~~~~~~~------- 60 (91)
T PF00027_consen 1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSI----NED---------GKEQIIFFLGPGDIFGEIELLTGK------- 60 (91)
T ss_dssp -EEESTTEEEEETTSBESEEEEEEESEEEEEEE----TTT---------SEEEEEEEEETTEEESGHHHHHTS-------
T ss_pred CeEECCCCEEEeCCCcCCEEEEEEECceEEEec----eec---------ceeeeecceeeeccccceeecCCC-------
Confidence 367999999999999999999999999999992 322 112357889999999999876321
Q ss_pred CCCcceEEEEeceEEEEEECHHHHHHHHHhchh
Q 007676 527 IPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEI 559 (593)
Q Consensus 527 ~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~ 559 (593)
++..+++|.++|+++.|++++|.++++++|+
T Consensus 61 --~~~~~~~a~~~~~~~~i~~~~~~~~~~~~p~ 91 (91)
T PF00027_consen 61 --PSPFTVIALTDSEVLRIPREDFLQLLQQDPE 91 (91)
T ss_dssp --BBSSEEEESSSEEEEEEEHHHHHHHHHHSHH
T ss_pred --ccEEEEEEccCEEEEEEeHHHHHHHHHhCcC
Confidence 5688999999999999999999999999996
No 12
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]
Probab=99.27 E-value=6.6e-12 Score=123.85 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=42.8
Q ss_pred HHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007676 299 LHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQ 347 (593)
Q Consensus 299 l~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~ 347 (593)
-.|+|||++|||||||||..|.|...+++..++.+.|++-.|.-+.-|.
T Consensus 395 PdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIV 443 (507)
T KOG1545|consen 395 PDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIV 443 (507)
T ss_pred cccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEE
Confidence 3689999999999999999999999999999999999987776554433
No 13
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.25 E-value=2e-11 Score=126.22 Aligned_cols=127 Identities=21% Similarity=0.347 Sum_probs=111.1
Q ss_pred HHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCC
Q 007676 417 HELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNN 496 (593)
Q Consensus 417 ~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~ 496 (593)
.+-+.++|+.+|+|+++|++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+.. .+.. +.
T Consensus 267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq----~~e~--------~~ 334 (732)
T KOG0614|consen 267 HEQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQ----QDEG--------ST 334 (732)
T ss_pred HHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEee----cCCC--------CC
Confidence 44578899999999999999999999999999999999999999999999999999999998 3332 23
Q ss_pred ccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEece-EEEEEECHHHHHHHHHhchhhhhhh
Q 007676 497 NMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTD-VEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 497 ~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~-~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
++..++.++.|++|||-+|+.. ..|++++.|..+ ++++.|+++.|.+++-...+++.+.
T Consensus 335 q~~~lr~l~kGd~FGE~al~~e---------dvRtAniia~~~gv~cl~lDresF~~liG~l~~l~ek~ 394 (732)
T KOG0614|consen 335 QPQELRTLNKGDYFGERALLGE---------DVRTANIIAQAPGVECLTLDRESFKKLIGDLEELKEKD 394 (732)
T ss_pred chhHHhhccccchhhHHHhhcc---------CccchhhhccCCCceEEEecHHHHHHhcccHHHhhhhh
Confidence 4578899999999999988521 278999999988 9999999999999998888886433
No 14
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=99.23 E-value=7.9e-12 Score=129.11 Aligned_cols=119 Identities=18% Similarity=0.346 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccc
Q 007676 414 NIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFR 493 (593)
Q Consensus 414 ~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~ 493 (593)
.=..++.++.+.+..+++++.++.+++++..|.+..|.+|..|+++||+++.+|.+.+|+++|.. +|
T Consensus 146 ~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~-----~g-------- 212 (732)
T KOG0614|consen 146 VGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR-----EG-------- 212 (732)
T ss_pred ccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee-----CC--------
Confidence 33566778889999999999999999999999999999999999999999999999999999998 44
Q ss_pred cCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchh
Q 007676 494 DNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEI 559 (593)
Q Consensus 494 ~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~ 559 (593)
+.++..++|..|||.++++++ +|+++|+|+++|.+|.|.|+-|+.|+..--.
T Consensus 213 -----~ll~~m~~gtvFGELAILync---------tRtAsV~alt~~~lWaidR~vFq~IM~~tg~ 264 (732)
T KOG0614|consen 213 -----KLLGKMGAGTVFGELAILYNC---------TRTASVRALTDVRLWAIDREVFQAIMMRTGL 264 (732)
T ss_pred -----eeeeccCCchhhhHHHHHhCC---------cchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999875 7899999999999999999999999865543
No 15
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=99.22 E-value=1.5e-10 Score=100.37 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=96.9
Q ss_pred hhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCC
Q 007676 429 EFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGD 508 (593)
Q Consensus 429 ~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~ 508 (593)
+|.+++++.++.++..++...+.+|++|+.+|+..+.+|||.+|.+.+.... .+| +...+..+++|+
T Consensus 1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~--~~g-----------~~~~~~~~~~g~ 67 (120)
T smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVL--EDG-----------REQILGILGPGD 67 (120)
T ss_pred CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEEC--CCC-----------ceEEEEeecCCc
Confidence 4678999999999999999999999999999999999999999999999821 122 235778899999
Q ss_pred eecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007676 509 FWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 509 ~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
+||+..++.. ...+...+++|.++|+++.++.+++.+.+..+|.+..+
T Consensus 68 ~~g~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 115 (120)
T smart00100 68 FFGELALLTN-------SRRAASATAVALELATLLRIDFRDFLQLLQENPQLLLE 115 (120)
T ss_pred eechhhhccC-------CCcccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHH
Confidence 9999876411 11256788999999999999999999999999987544
No 16
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=99.21 E-value=1.7e-11 Score=121.67 Aligned_cols=110 Identities=17% Similarity=0.226 Sum_probs=98.7
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007676 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
...+++.-+|++++++.+.++...|.++.+..|+.|++|||.++.+|+|.+|+++++. +| +-
T Consensus 121 ~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv-----~~-------------~~ 182 (368)
T KOG1113|consen 121 EEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV-----NG-------------TY 182 (368)
T ss_pred HHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE-----CC-------------eE
Confidence 3556677799999999999999999999999999999999999999999999999999 44 36
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhc
Q 007676 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEH 557 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~ 557 (593)
+..+++|..|||.+|+++ +||.+|+.|.+++.+|.|.+..|..++-..
T Consensus 183 v~~~~~g~sFGElALmyn---------~PRaATv~a~t~~klWgldr~SFrrIi~~s 230 (368)
T KOG1113|consen 183 VTTYSPGGSFGELALMYN---------PPRAATVVAKSLKKLWGLDRTSFRRIIMKS 230 (368)
T ss_pred EeeeCCCCchhhhHhhhC---------CCcccceeeccccceEEEeeceeEEEeecc
Confidence 788999999999999754 388999999999999999999998876444
No 17
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.18 E-value=1.9e-10 Score=93.32 Aligned_cols=56 Identities=13% Similarity=0.333 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007676 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLE 351 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~ 351 (593)
..|..|+||+++|+||+||||+.|.++.+++++++.+++|..+++..++.+++.+.
T Consensus 23 ~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 23 WSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp TSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999999999999998875
No 18
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=99.17 E-value=2.7e-10 Score=112.72 Aligned_cols=118 Identities=17% Similarity=0.111 Sum_probs=96.0
Q ss_pred hhcCHhhhcCcHHHHHHHHhhccE-EEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccce
Q 007676 424 LKSVEEFKKLNEAILDALCDCVKM-TFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMD 502 (593)
Q Consensus 424 l~~i~~F~~~s~~~l~~L~~~l~~-~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~ 502 (593)
+++.+.|..++++.++.|....+. ..|.+|+.|+.+||.++.+|+|.+|.|+++.. ..+|. +.++.
T Consensus 15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~--~~~G~-----------e~i~~ 81 (235)
T PRK11161 15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTI--TEQGD-----------EQITG 81 (235)
T ss_pred ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEE--CCCCC-----------EEEEE
Confidence 445555557999999999988864 67999999999999999999999999999982 13443 25677
Q ss_pred ecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 503 HLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 503 ~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
.+.+|++||+.++. .. ....+++|.++|+++.|++++|.+++.++|++....
T Consensus 82 ~~~~gd~~g~~~~~---~~-------~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~ 133 (235)
T PRK11161 82 FHLAGDLVGFDAIG---SG-------QHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQI 133 (235)
T ss_pred eccCCceecccccc---CC-------CCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHH
Confidence 78999999986542 11 234579999999999999999999999999986554
No 19
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=99.15 E-value=3.5e-10 Score=111.32 Aligned_cols=107 Identities=17% Similarity=0.246 Sum_probs=89.5
Q ss_pred HHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhH
Q 007676 436 AILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELV 515 (593)
Q Consensus 436 ~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~l 515 (593)
-|..++....+...|++|+.|+.+||.++.+|||.+|.|+++.. ..+|+ ...+..+.+|++||+.++
T Consensus 22 ~~~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~--~~~G~-----------e~~~~~~~~g~~~G~~~~ 88 (226)
T PRK10402 22 CFSFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYAT--LANGK-----------VSLIDFFAAPCFIGEIEL 88 (226)
T ss_pred cCCHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEE--CCCCC-----------EeeeeecCCCCeEEeehh
Confidence 33445778889999999999999999999999999999999982 23443 357788999999999875
Q ss_pred HHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 516 AWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 516 l~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+. ..++..+++|.++|+++.+++++|.+++.++|.+....
T Consensus 89 ~~---------~~~~~~~~~A~~~~~i~~i~~~~~~~ll~~~p~~~~~~ 128 (226)
T PRK10402 89 ID---------KDHETKAVQAIEECWCLALPMKDCRPLLLNDALFLRKL 128 (226)
T ss_pred hc---------CCCCCccEEEeccEEEEEEEHHHHHHHHhcCHHHHHHH
Confidence 31 12678899999999999999999999999999986544
No 20
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.13 E-value=4.4e-10 Score=118.08 Aligned_cols=118 Identities=20% Similarity=0.291 Sum_probs=105.2
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007676 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+++.+.|.|+.++++.+++|...++...|.+||.|+..|.+...+|+|.+|.|++.. .+|. +
T Consensus 6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~----~~g~-------------v 68 (610)
T COG2905 6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS----DGGE-------------V 68 (610)
T ss_pred HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc----CCCe-------------e
Confidence 4678899999999999999999999999999999999999999999999999999999 5554 8
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+.+|+.||-.+++... .....+.|.+++-+|.|+++.|.++++++|+|++..
T Consensus 69 ~~~~~~gdlFg~~~l~~~~---------~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff 123 (610)
T COG2905 69 LDRLAAGDLFGFSSLFTEL---------NKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFF 123 (610)
T ss_pred eeeeccCccccchhhcccC---------CCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHH
Confidence 8999999999998875321 224457788899999999999999999999998876
No 21
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=99.10 E-value=1.4e-09 Score=105.20 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=98.3
Q ss_pred hcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceec
Q 007676 425 KSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHL 504 (593)
Q Consensus 425 ~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l 504 (593)
...+.|...++.....+....+...+++|+.|+.+||.++.+|+|.+|.++++.. ..+|. ...+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~--~~~G~-----------~~~~~~~ 69 (214)
T COG0664 3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYAN--TEDGR-----------EIILGFL 69 (214)
T ss_pred ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEE--CCCCc-----------EEEEEEe
Confidence 3455666677777788888899999999999999999999999999999999983 23443 2577889
Q ss_pred CCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 505 ADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 505 ~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
++|++||+.+++.. .++.++++|.++|+++.+++++|.+++.+.|.+....
T Consensus 70 ~~g~~fg~~~l~~~---------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l 120 (214)
T COG0664 70 GPGDFFGELALLGG---------DPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120 (214)
T ss_pred cCCchhhhHHHhcC---------CCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHH
Confidence 99999999987521 1578999999999999999999999998888876554
No 22
>PLN02868 acyl-CoA thioesterase family protein
Probab=99.06 E-value=1.5e-09 Score=116.44 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=100.2
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007676 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++++++|++++++.+++++..++...|.+||+|+++||.++.+|+|.+|.|+++... .+|+ ..
T Consensus 7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~--~~ge------------~~ 72 (413)
T PLN02868 7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPA--EEES------------RP 72 (413)
T ss_pred HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEEC--CCCc------------EE
Confidence 456789999999999999999999999999999999999999999999999999998821 2222 56
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhh
Q 007676 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGS 562 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~ 562 (593)
+..+++|++||+. + .. .++..+++|.++|+++.|++++|..+....+...+
T Consensus 73 l~~l~~Gd~fG~~-l----~~------~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~~~~~ 123 (413)
T PLN02868 73 EFLLKRYDYFGYG-L----SG------SVHSADVVAVSELTCLVLPHEHCHLLSPKSIWDSD 123 (413)
T ss_pred EEEeCCCCEeehh-h----CC------CCcccEEEECCCEEEEEEcHHHHhhhccccccccc
Confidence 7889999999975 2 11 25788999999999999999999998888776543
No 23
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]
Probab=99.05 E-value=3.2e-09 Score=110.70 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=70.9
Q ss_pred ChhhHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhh
Q 007676 293 DFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMP 372 (593)
Q Consensus 293 ~~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~ 372 (593)
+.+..|-.|++|.+.|+|||||||.+|.|-..++++.++.++|..+||.--|.+++=++-.-++ .+.=++|-+
T Consensus 265 ~~F~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQe-------q~RQKHf~r 337 (654)
T KOG1419|consen 265 DEFPTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQE-------QHRQKHFNR 337 (654)
T ss_pred ccchhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHH-------HHHHHHHHh
Confidence 4557899999999999999999999999999999999999999999998877777654322111 112245667
Q ss_pred cCCCCHHHHHHHHHHHH
Q 007676 373 IEKLSQSVQQQLKIYQR 389 (593)
Q Consensus 373 ~~~lp~~L~~rv~~y~~ 389 (593)
+++.-..|.+-.-+||.
T Consensus 338 rr~pAA~LIQc~WR~ya 354 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYA 354 (654)
T ss_pred hcchHHHHHHHHHHHHh
Confidence 77877888777776664
No 24
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=98.96 E-value=3.8e-09 Score=104.19 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=84.1
Q ss_pred HHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHh
Q 007676 439 DALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWA 518 (593)
Q Consensus 439 ~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~ 518 (593)
..+....+...|.+|+.|+.+||.++.+|||.+|.|+++.. ..+|+ +.++..+.+|++||+..
T Consensus 32 ~~~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~--~~~G~-----------e~i~~~~~~Gd~fG~~~---- 94 (230)
T PRK09391 32 GHAGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRL--LSDGR-----------RQIGAFHLPGDVFGLES---- 94 (230)
T ss_pred ccccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEE--CCCCc-----------EEEEEEecCCceecccC----
Confidence 34566778899999999999999999999999999999982 23443 24677889999999642
Q ss_pred hcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 519 LYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 519 ~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
. .++..+++|.++|+++.|++++|.+++.++|++....
T Consensus 95 --~------~~~~~~~~A~~ds~v~~i~~~~f~~l~~~~p~l~~~l 132 (230)
T PRK09391 95 --G------STHRFTAEAIVDTTVRLIKRRSLEQAAATDVDVARAL 132 (230)
T ss_pred --C------CcCCeEEEEcCceEEEEEEHHHHHHHHhhChHHHHHH
Confidence 0 1457899999999999999999999999999987655
No 25
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=98.92 E-value=9e-09 Score=98.47 Aligned_cols=92 Identities=17% Similarity=0.182 Sum_probs=75.4
Q ss_pred CCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcce
Q 007676 453 HTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTR 532 (593)
Q Consensus 453 ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~ 532 (593)
|+.|+.+||..+.+|+|.+|.|+++.. ..+|. +..+..+++|++||+.+++.. ...++..
T Consensus 1 g~~l~~~g~~~~~~~~i~~G~v~~~~~--~~~G~-----------e~~l~~~~~g~~~G~~~~~~~-------~~~~~~~ 60 (193)
T TIGR03697 1 GKTIFFPGDPAEKVYFLRRGAVKLSRV--YESGE-----------EITVALLRENSVFGVLSLITG-------HRSDRFY 60 (193)
T ss_pred CCceecCCCCCCcEEEEEecEEEEEEe--CCCCc-----------EeeeEEccCCCEeeeeeeccC-------CCCccce
Confidence 789999999999999999999999982 23443 356789999999999876421 1113457
Q ss_pred EEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 533 TVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 533 tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+++|.++|+++.+++++|.++++++|++....
T Consensus 61 ~~~A~~~~~v~~i~~~~~~~l~~~~p~l~~~~ 92 (193)
T TIGR03697 61 HAVAFTRVELLAVPIEQVEKAIEEDPDLSMLL 92 (193)
T ss_pred EEEEecceEEEEeeHHHHHHHHHHChHHHHHH
Confidence 79999999999999999999999999987654
No 26
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]
Probab=98.88 E-value=3.7e-09 Score=105.23 Aligned_cols=118 Identities=15% Similarity=0.215 Sum_probs=104.1
Q ss_pred HHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCC
Q 007676 417 HELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNN 496 (593)
Q Consensus 417 ~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~ 496 (593)
..+|.+.|+++|+++.+.......++..+.++.|.+|+.|+.+|+.++.+|+|.+|+|.+.. ..++
T Consensus 235 rkMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~----~~~~---------- 300 (368)
T KOG1113|consen 235 RKMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLK----KRDG---------- 300 (368)
T ss_pred hhhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhh----ccCC----------
Confidence 45678899999999999999999999999999999999999999999999999999999988 2222
Q ss_pred ccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhh
Q 007676 497 NMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEIS 560 (593)
Q Consensus 497 ~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l 560 (593)
.++ .++.|++|||.+++.+. +|.+++.|.+...+..+.+..|+.++..--++
T Consensus 301 --v~v-kl~~~dyfge~al~~~~---------pr~Atv~a~~~~kc~~~dk~~ferllgpc~di 352 (368)
T KOG1113|consen 301 --VEV-KLKKGDYFGELALLKNL---------PRAATVVAKGRLKCAKLDKPRFERLLGPCQDI 352 (368)
T ss_pred --eEE-EechhhhcchHHHHhhc---------hhhceeeccCCceeeeeChHHHHHHhhHHHHH
Confidence 344 99999999999987543 78999999999999999999999998765554
No 27
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.79 E-value=4.2e-09 Score=109.64 Aligned_cols=127 Identities=12% Similarity=0.217 Sum_probs=88.3
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcCC
Q 007676 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIEK 375 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~ 375 (593)
-.|..|+|+-++||+||||||+..+|...+.|.++..+.|..+||.-+..+..++.+-.+-.-+|+..- .+++
T Consensus 287 ltyw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-------gkkh 359 (1103)
T KOG1420|consen 287 LTYWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-------GKKH 359 (1103)
T ss_pred chhhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-------CCee
Confidence 579999999999999999999999999999999999999999999999999999988665444443211 0011
Q ss_pred C--CHH-HHHHHHHHHHHHHhcc-CCCCH-HHHHhhCCHHHHHHHHHHHHHHHhhcCHhhhc
Q 007676 376 L--SQS-VQQQLKIYQRYVWRKP-NNIDV-ESTLSSLPKELIRNIKHELCLELLKSVEEFKK 432 (593)
Q Consensus 376 l--p~~-L~~rv~~y~~~~~~~~-~~~~~-~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~ 432 (593)
+ -.+ ..+.|..|++-...+. ...+. --+|...||.|.-| -++.+.+.++.+|++
T Consensus 360 ivvcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqg 418 (1103)
T KOG1420|consen 360 IVVCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQG 418 (1103)
T ss_pred EEEecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecc
Confidence 0 000 1223333333332232 23342 34578888888654 456777888888865
No 28
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=98.73 E-value=9.1e-08 Score=92.26 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=69.5
Q ss_pred hccEEEecCCCEEEcCCC--CccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcc
Q 007676 444 CVKMTFYFKHTHISLDGD--PIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYN 521 (593)
Q Consensus 444 ~l~~~~~~~ge~I~~~Gd--~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~ 521 (593)
.++...|++|+.|+.+|| .++.+|+|.+|.|+++.. ..+|+ +..+..+.+|++||+.+++ .
T Consensus 5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~--~~~G~-----------e~~l~~~~~Gd~~G~~~~~---~- 67 (202)
T PRK13918 5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTV--DDEGN-----------ALTLRYVRPGEYFGEEALA---G- 67 (202)
T ss_pred ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEE--CCCCC-----------EEEEEEecCCCeechHHhc---C-
Confidence 467889999999999999 779999999999999982 23444 3577888999999987542 1
Q ss_pred cccCCCCCcceEEEEeceEEEEEECHHHH
Q 007676 522 RSLSNIPVSTRTVQTLTDVEGFVLTAEDL 550 (593)
Q Consensus 522 ~~~~~~~~r~~tv~A~~~~~l~~Ls~~df 550 (593)
.++..+++|.++|+++.|++++|
T Consensus 68 ------~~~~~~~~A~~~~~v~~i~~~~~ 90 (202)
T PRK13918 68 ------AERAYFAEAVTDSRIDVLNPALM 90 (202)
T ss_pred ------CCCCceEEEcCceEEEEEEHHHc
Confidence 14578899999999999999887
No 29
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.9e-08 Score=100.44 Aligned_cols=53 Identities=13% Similarity=0.294 Sum_probs=46.2
Q ss_pred HHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 007676 299 LHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLF----LFGNMQMYLE 351 (593)
Q Consensus 299 l~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~----iig~i~~i~~ 351 (593)
-.++|+.++||||.||||..|.|...++|..++.+.|+++.|. ++++.+.|..
T Consensus 358 PaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFSRIYH 414 (632)
T KOG4390|consen 358 PAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYH 414 (632)
T ss_pred cHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechhHHHh
Confidence 4789999999999999999999999999999999999998875 4466666654
No 30
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.33 E-value=1.2e-05 Score=84.97 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=50.0
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007676 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYL 350 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~ 350 (593)
.+..|+||++.|+||+||||+.|.+...+++++++++.|..++++.++.+...+
T Consensus 168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~ 221 (393)
T PRK10537 168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV 221 (393)
T ss_pred CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999887644
No 31
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=97.91 E-value=0.00043 Score=71.85 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=72.4
Q ss_pred hhhHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhc
Q 007676 294 FPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPI 373 (593)
Q Consensus 294 ~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 373 (593)
....|+.|++....|..++||||+.|.|...+..+++.-++|+++.|.+++-|+-=+ +..+--..+++||-+
T Consensus 284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL--------eLt~aEKhVhNFMmD 355 (489)
T KOG3684|consen 284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL--------ELTKAEKHVHNFMMD 355 (489)
T ss_pred hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 336789999999999999999999999999999999999999999999998877543 333334467777777
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q 007676 374 EKLSQSVQQQLKIYQRYVWR 393 (593)
Q Consensus 374 ~~lp~~L~~rv~~y~~~~~~ 393 (593)
.++-+++++-..+=++..|.
T Consensus 356 tqLTk~~KnAAA~VLqeTW~ 375 (489)
T KOG3684|consen 356 TQLTKEHKNAAANVLQETWL 375 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777766665555555543
No 32
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=97.87 E-value=0.00014 Score=75.21 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhHhhccccCCC--cccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007676 296 QKFLHCFRWGLRNLSCIGQNL--QTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKA 354 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGd--i~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~ 354 (593)
..+..+++||+.|+||||||. ++|....-.++.++-+++|.++.|+++|-+-+=++.-.
T Consensus 83 ~~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP~ 143 (336)
T PF01007_consen 83 NSFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRPK 143 (336)
T ss_dssp TTHHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cchhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 568899999999999999998 67777777788889999999999999999887776544
No 33
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=97.75 E-value=4.4e-05 Score=84.48 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=88.7
Q ss_pred HHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhH
Q 007676 436 AILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELV 515 (593)
Q Consensus 436 ~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~l 515 (593)
.++..+-..+.-....||+.++++||..|++|+|.+|.++.... +.|+ +...++.++.|+.+|+...
T Consensus 499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~---~~~~----------k~~i~~EygrGd~iG~~E~ 565 (1158)
T KOG2968|consen 499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIR---QSGG----------KKEIVGEYGRGDLIGEVEM 565 (1158)
T ss_pred HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhh---ccCc----------cchhhhhccCcceeehhHH
Confidence 34556666777889999999999999999999999999998772 2222 1247889999999999876
Q ss_pred HHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 516 AWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 516 l~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+.. .+|..|+.|+.++++.+||..-|..+..+||.+..+.
T Consensus 566 lt~---------~~R~tTv~AvRdSelariPe~l~~~ik~ryP~v~~rl 605 (1158)
T KOG2968|consen 566 LTK---------QPRATTVMAVRDSELARIPEGLLNFIKLRYPQVVTRL 605 (1158)
T ss_pred hhc---------CCccceEEEEeehhhhhccHHHHHHHHHhccHHHHHH
Confidence 532 1678899999999999999999999999999986654
No 34
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=97.60 E-value=6.9e-05 Score=80.61 Aligned_cols=58 Identities=17% Similarity=0.407 Sum_probs=53.6
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007676 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKA 354 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~ 354 (593)
-+..|+|++++++||+|||++.|.|...++++|+..++|.-++..+++.++..+...-
T Consensus 115 ~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 115 SFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred ecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999887543
No 35
>PRK11832 putative DNA-binding transcriptional regulator; Provisional
Probab=96.95 E-value=0.022 Score=54.32 Aligned_cols=102 Identities=7% Similarity=0.009 Sum_probs=76.3
Q ss_pred HHHHHHhhccEEEecCCCEE-EcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhH
Q 007676 437 ILDALCDCVKMTFYFKHTHI-SLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELV 515 (593)
Q Consensus 437 ~l~~L~~~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~l 515 (593)
.++.|...-++..+.+|..+ +.+....+..+++.+|.|.+.. .|+ ..+....+...||-...
T Consensus 14 L~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr----~d~-------------ll~~t~~aP~IlGl~~~ 76 (207)
T PRK11832 14 LDKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR----EEN-------------VLIGITQAPYIMGLADG 76 (207)
T ss_pred HHHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe----cCC-------------eEEEeccCCeEeecccc
Confidence 44556666678889999997 5444444679999999999955 444 36778888899996532
Q ss_pred HHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007676 516 AWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 516 l~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
. .+. ......+|.++|+++.++.++|.++++++.=|++..
T Consensus 77 ~---~~~------~~~~~l~ae~~c~~~~i~~~~~~~iie~~~LW~~~~ 116 (207)
T PRK11832 77 L---MKN------DIPYKLISEGNCTGYHLPAKQTITLIEQNQLWRDAF 116 (207)
T ss_pred c---CCC------CceEEEEEcCccEEEEeeHHHHHHHHHHhchHHHHH
Confidence 1 111 234679999999999999999999999998776554
No 36
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=96.89 E-value=0.00066 Score=53.91 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=28.4
Q ss_pred ccccCCCCCC--ChhHHHHHHHHHHHHHhhhhh
Q 007676 16 REIVDPQQPH--PWKFIWFMLCATAVSLDFWFF 46 (593)
Q Consensus 16 ~~ii~P~s~~--~Wd~~~~~~~~~~~~~~P~~~ 46 (593)
..+|||.|+| +||.+++++++++++++|+.+
T Consensus 36 ~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~i 68 (77)
T PF08412_consen 36 PWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRI 68 (77)
T ss_pred CeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4599999999 999999999999999999985
No 37
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]
Probab=96.78 E-value=0.0075 Score=67.47 Aligned_cols=105 Identities=12% Similarity=0.065 Sum_probs=81.8
Q ss_pred HHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecch-hHHHh
Q 007676 440 ALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEE-LVAWA 518 (593)
Q Consensus 440 ~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~-~ll~~ 518 (593)
+++..++...+..||+|++.|+..+.+|.+.+|...+.. .+|. ++...+..+.+|+-|-.. +++-.
T Consensus 110 ~L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~----~~~~---------g~~~llk~V~~G~~~tSllSiLd~ 176 (1158)
T KOG2968|consen 110 ELDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHI----RNGD---------GKEYLLKTVPPGGSFTSLLSILDS 176 (1158)
T ss_pred eechhhhhhcccCCceeccCCCCCceEEEEeccceEEEe----cCCC---------CceeeEeeccCCCchHhHHHHHHh
Confidence 445788888999999999999999999999999999998 4443 234577889999776643 33322
Q ss_pred hcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhh
Q 007676 519 LYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEIS 560 (593)
Q Consensus 519 ~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l 560 (593)
+.. .....++..++|.++|.+..++.+.|.++..+||+-
T Consensus 177 l~~---~ps~~~~i~akA~t~~tv~~~p~~sF~~~~~k~P~s 215 (1158)
T KOG2968|consen 177 LPG---FPSLSRTIAAKAATDCTVARIPYTSFRESFHKNPES 215 (1158)
T ss_pred ccC---CCcccceeeeeeecCceEEEeccchhhhhhccChHH
Confidence 211 111246778999999999999999999999999995
No 38
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle. It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
Probab=96.70 E-value=0.05 Score=48.79 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=84.7
Q ss_pred cCcHHHHHHHHhh-ccEEEecCCCEEEcCCC-CccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCe
Q 007676 432 KLNEAILDALCDC-VKMTFYFKHTHISLDGD-PIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDF 509 (593)
Q Consensus 432 ~~s~~~l~~L~~~-l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~ 509 (593)
++|....++|+.. .+.....+|+.-..||. +.|.+-++++|++.+.. +|. .+..+.+.++
T Consensus 14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~-----~g~-------------fLH~I~p~qF 75 (153)
T PF04831_consen 14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC-----DGR-------------FLHYIYPYQF 75 (153)
T ss_pred CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE-----CCE-------------eeEeeccccc
Confidence 4677777888877 55677899999998884 46899999999999998 554 5556666666
Q ss_pred ecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhhhhhhH
Q 007676 510 WGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTKLNLKH 569 (593)
Q Consensus 510 FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~~~l~~ 569 (593)
..--... +..+ +....-+.|+.|.++|..+..+|+.+..++.+.|-++.-..++..
T Consensus 76 lDSPEW~-s~~~---s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liG 131 (153)
T PF04831_consen 76 LDSPEWE-SLRP---SEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIG 131 (153)
T ss_pred ccChhhh-cccc---CCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHH
Confidence 6532211 1111 111234788999999999999999999999999998765543333
No 39
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.0092 Score=61.02 Aligned_cols=58 Identities=17% Similarity=0.389 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhHhhccccCCCcc--cCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007676 296 QKFLHCFRWGLRNLSCIGQNLQT--SSNSWENFFVILVTICGLLLLLFLFGNMQMYLESK 353 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~--p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~ 353 (593)
.....|+-|++-|=||+|||-=. ..-..-.+..++-+++|+++-|+++|.+-+=++.-
T Consensus 111 ~sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP 170 (400)
T KOG3827|consen 111 HSFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP 170 (400)
T ss_pred cchhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34568899999999999999643 33344455666778899999999999877655543
No 40
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0032 Score=62.77 Aligned_cols=59 Identities=14% Similarity=0.256 Sum_probs=45.6
Q ss_pred HHHHHHHHhHhhccccCCCcccCc-------hhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 007676 298 FLHCFRWGLRNLSCIGQNLQTSSN-------SWEN-FFVILVTICGLLLLLFLFGNMQMYLESKALK 356 (593)
Q Consensus 298 Yl~slYwa~~TmtTvGyGdi~p~~-------~~E~-i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~ 356 (593)
|..|+|+.+.|+||||+||..+-- ..++ .++.+..++|..+++..++-+.-.+..++..
T Consensus 187 yfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~ 253 (350)
T KOG4404|consen 187 YFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAE 253 (350)
T ss_pred hhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 789999999999999999987632 2333 5566677789999888888877777666543
No 41
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=96.35 E-value=0.0011 Score=65.98 Aligned_cols=53 Identities=23% Similarity=0.383 Sum_probs=45.7
Q ss_pred HHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007676 298 FLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYL 350 (593)
Q Consensus 298 Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~ 350 (593)
..-|+|||.+.+||||||-.+|.|+..++|+|+-.++|+-+--.++.++++-+
T Consensus 81 F~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERl 133 (350)
T KOG4404|consen 81 FAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERL 133 (350)
T ss_pred cCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999877766666655533
No 42
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.0052 Score=66.02 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=42.0
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhH--------HHHHHHHHHHHHHHHHHH
Q 007676 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWEN--------FFVILVTICGLLLLLFLF 343 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~--------i~~i~~mi~G~~~~a~ii 343 (593)
--|+.|+||+++++||||+||+.|.+...+ ....+..++|....+.+.
T Consensus 241 w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 296 (433)
T KOG1418|consen 241 WSFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL 296 (433)
T ss_pred eeeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence 468899999999999999999999988766 678888888888888877
No 43
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.28 E-value=0.059 Score=58.49 Aligned_cols=111 Identities=15% Similarity=0.284 Sum_probs=86.0
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEe-cCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccc
Q 007676 421 LELLKSVEEFKKLNEAILDALCDCVKMTFY-FKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMT 499 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~-~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~ 499 (593)
.++..+.|.|.+++-...++||..|...+. ..|.+|...|+.-|..+.|++|.|++.. ++|+
T Consensus 280 LeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~----PdGk------------- 342 (1283)
T KOG3542|consen 280 LEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK----PDGK------------- 342 (1283)
T ss_pred HHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec----CCCc-------------
Confidence 567788999999999999999999886554 6899999999999999999999999999 6876
Q ss_pred cceecCCCCeecchhHHHhhcccccCCCCCcceEEE-EeceEEEEEECHHHHHHHHHhch
Q 007676 500 KMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQ-TLTDVEGFVLTAEDLKSVFTEHE 558 (593)
Q Consensus 500 ~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~-A~~~~~l~~Ls~~df~~ll~~~P 558 (593)
...+.-|+-||..--. +.+ . -.-.++ -+.+|+..+|...|+-.++..--
T Consensus 343 -~e~l~mGnSFG~~PT~---dkq-y-----m~G~mRTkVDDCqFVciaqqDycrIln~ve 392 (1283)
T KOG3542|consen 343 -REELKMGNSFGAEPTP---DKQ-Y-----MIGEMRTKVDDCQFVCIAQQDYCRILNTVE 392 (1283)
T ss_pred -eEEeecccccCCCCCc---chh-h-----hhhhhheecccceEEEeehhhHHHHHHHHH
Confidence 2567889999954210 100 0 011122 35889999999999999986543
No 44
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.13 E-value=1.3 Score=50.62 Aligned_cols=72 Identities=11% Similarity=0.177 Sum_probs=39.3
Q ss_pred cccccccc-ccccCCCCCC-----------ChhHHHHHHHHHHHHHhhhhhheeeecCCCcceecCccchhhHHHHHHHH
Q 007676 8 SAGELEVR-REIVDPQQPH-----------PWKFIWFMLCATAVSLDFWFFYIPVVNDDRKCISLDAKLAITACLLRFLF 75 (593)
Q Consensus 8 ~~~~~~~~-~~ii~P~s~~-----------~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (593)
+-...+.| ..++.|+++| ..|.++++++.++.+++-+.- |...+ . ...-.++.+-|+++
T Consensus 1095 ~c~~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialer--p~i~~----~---s~EriFltlsnyIF 1165 (1956)
T KOG2302|consen 1095 WCNLRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALER--PAIVE----G---STERIFLTLSNYIF 1165 (1956)
T ss_pred chhHHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcc--ccccc----C---cceEEEEEecchHH
Confidence 33445556 6678899977 345444444444444443331 11111 0 01112344556888
Q ss_pred HHHHHHHhhheee
Q 007676 76 DFLYSIPIALQML 88 (593)
Q Consensus 76 d~~f~~Di~l~f~ 88 (593)
-++|++.+.++--
T Consensus 1166 taIfV~Em~lKVV 1178 (1956)
T KOG2302|consen 1166 TAIFVVEMTLKVV 1178 (1956)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 45
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=93.19 E-value=0.39 Score=51.22 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=21.9
Q ss_pred HHHHHHHhHhhccccCCCcccCchhhH
Q 007676 299 LHCFRWGLRNLSCIGQNLQTSSNSWEN 325 (593)
Q Consensus 299 l~slYwa~~TmtTvGyGdi~p~~~~E~ 325 (593)
..|+||.++|.+||||||..|.--.-.
T Consensus 219 f~s~y~v~vtfstvgygd~~pd~w~sq 245 (1087)
T KOG3193|consen 219 FTSFYFVMVTFSTVGYGDWYPDYWASQ 245 (1087)
T ss_pred eeeEEEEEEEEeeccccccccccchhh
Confidence 368999999999999999999643333
No 46
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=91.17 E-value=0.33 Score=52.97 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=71.6
Q ss_pred HhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccce
Q 007676 423 LLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMD 502 (593)
Q Consensus 423 ~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~ 502 (593)
.|.+...|.++-..-++.++...+.+.++...+++..|+++++.|++.+|.|-+.. .
T Consensus 38 ~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~g-----------------------q 94 (1283)
T KOG3542|consen 38 QLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVEG-----------------------Q 94 (1283)
T ss_pred HHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEeec-----------------------c
Confidence 56677888888888899999999999999999999999999999999999998765 1
Q ss_pred ecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEEC
Q 007676 503 HLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLT 546 (593)
Q Consensus 503 ~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls 546 (593)
.+-+-.+||.-. .. .|+.++-.+..+++.+++
T Consensus 95 i~mp~~~fgkr~---------g~---~r~~nclllq~semivid 126 (1283)
T KOG3542|consen 95 IYMPYGCFGKRT---------GQ---NRTHNCLLLQESEMIVID 126 (1283)
T ss_pred eecCcccccccc---------cc---ccccceeeecccceeeee
Confidence 344666777541 11 467788888888888873
No 47
>COG4709 Predicted membrane protein [Function unknown]
Probab=89.23 E-value=1.8 Score=40.26 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=57.4
Q ss_pred HHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhc--cCCCCHHHHHhhC--CHHHHHHHHHHHHHHHhhcCHhhhcCcHH
Q 007676 361 SVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRK--PNNIDVESTLSSL--PKELIRNIKHELCLELLKSVEEFKKLNEA 436 (593)
Q Consensus 361 ~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~~~~~l~~i~~F~~~s~~ 436 (593)
.+-++++++|++ ++|++.++.+..||+-.+.+ ..|.+|+|+.++| |.++-.|+..+.-.+..+.-|-+++.+..
T Consensus 4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a 81 (195)
T COG4709 4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA 81 (195)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence 345678888887 89999999999999888775 3577899999998 66777777777666666665666665554
Q ss_pred HH
Q 007676 437 IL 438 (593)
Q Consensus 437 ~l 438 (593)
.+
T Consensus 82 ii 83 (195)
T COG4709 82 II 83 (195)
T ss_pred HH
Confidence 43
No 48
>PLN03223 Polycystin cation channel protein; Provisional
Probab=85.38 E-value=33 Score=41.67 Aligned_cols=23 Identities=13% Similarity=-0.099 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHhhheee
Q 007676 66 ITACLLRFLFDFLYSIPIALQML 88 (593)
Q Consensus 66 ~~~~~~~~~~d~~f~~Di~l~f~ 88 (593)
..|.+++++.-++.+.=|++-|.
T Consensus 1213 SfWNwLEIl~IlLS~AAIvLYFv 1235 (1634)
T PLN03223 1213 SGWNYVDFASIGLHLATIMMWFV 1235 (1634)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 47889998888888877776543
No 49
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=80.51 E-value=8.9 Score=36.06 Aligned_cols=57 Identities=21% Similarity=0.390 Sum_probs=45.1
Q ss_pred HHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhc--cCCCCHHHHHhhC--CHHHHHHHHHHH
Q 007676 361 SVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRK--PNNIDVESTLSSL--PKELIRNIKHEL 419 (593)
Q Consensus 361 ~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~--~~~~~~~~il~~L--p~~Lr~~i~~~~ 419 (593)
++=+++++++++ ++|++-++++.+||+-.... ..|.+|+++.++| |.++-+++..+.
T Consensus 4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 344667888887 69999999999999988875 4678899999997 667767766544
No 50
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=75.58 E-value=9.3 Score=47.56 Aligned_cols=84 Identities=10% Similarity=0.092 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHH-----HHHHHHHHHH----HH-hhchhHHHHHHHHH
Q 007676 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLL-----LFLFGNMQMY----LE-SKALKSKEMSVRMQ 365 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~-----a~iig~i~~i----~~-~~~~~~~~~~~~~~ 365 (593)
.-+..-+|=++- -+.++-|.+.+.+....+|-++..++|.++. |++|.+...- .. .+...++++...+.
T Consensus 1050 ~GW~~i~~~~id-s~~~~~~p~~~~~~~~~~ffvifii~~~ff~lnlFvgvII~nf~~q~~~~~~~~~~~eq~~~~~~~~ 1128 (1592)
T KOG2301|consen 1050 KGWPDIMYAAID-SRGVNAQPILESNLYMYLFFVIFIIIGSFFTLNLFVGVIIDNFNQQKGKAGGTFMTEEQKKRLNAAK 1128 (1592)
T ss_pred CCHHHHHHHHhh-hhccCcCCcccccccceeehhhhhhHHhhhheeeeEEEEEechhhhchhhhhhhhhHHHHHHHHHHH
Confidence 334444444433 3567777788777777777777777777664 3333333221 11 33445555666666
Q ss_pred HHHhHhhcCCCCHHH
Q 007676 366 EINEWMPIEKLSQSV 380 (593)
Q Consensus 366 ~i~~~m~~~~lp~~L 380 (593)
.+...=..+.+|..+
T Consensus 1129 ~l~sk~~~r~ipr~~ 1143 (1592)
T KOG2301|consen 1129 KLGSKPPQRPIPRPR 1143 (1592)
T ss_pred HhcCCCCCCCCCCCc
Confidence 666666667777664
No 51
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.24 E-value=35 Score=42.71 Aligned_cols=83 Identities=19% Similarity=0.348 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHHHHHHhhheeeeeEEecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhcc-chhhhHH
Q 007676 66 ITACLLRFLFDFLYSIPIALQMLTDLVSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSP-SLLVDLL 144 (593)
Q Consensus 66 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~-~F~~Dll 144 (593)
..+...+.++-.+|.+++.+.... . + -+.|+++ |-++|++
T Consensus 473 ~~l~~~~~vF~~lF~~Em~~ki~a--l---------------~----------------------~~~yF~~~~n~fD~~ 513 (1592)
T KOG2301|consen 473 YLLYLGNVVFTGLFTVEMILKIYA--L---------------G----------------------PRNYFRRGWNIFDLI 513 (1592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--c---------------C----------------------cHHHHhhhcchheEE
Confidence 456677777778888888776430 0 1 3456655 8889988
Q ss_pred hhcchhhhhhhhcccCCcchhHHHHHHHHHHHHHHHhHHHHHhHhc
Q 007676 145 AIFPLPQLVILFIIPQMRGSKILDAMDLLKYSVFIQFVPRIVRIYP 190 (593)
Q Consensus 145 s~lP~~~~~~~~~~~~~~~~~~l~~~rlLrl~rl~~~~~rl~r~~~ 190 (593)
-+. ++++... .....+.++++.+|+||+.|+.++.+.+..+.+
T Consensus 514 iv~-l~~~~~~--~~~~~g~svLr~frllRIfkl~k~wp~l~~lv~ 556 (1592)
T KOG2301|consen 514 IVL-LSLLELL--LKNVYGLSVLRSFRLLRIFKLIKSWPTLNDLVK 556 (1592)
T ss_pred EEe-hhhHHhc--ccchHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 766 4443222 122234578888888888888887766555443
No 52
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=68.35 E-value=7 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=24.4
Q ss_pred EEecCCCEEEcCCCCcc-EEEEEEEeEEEEEe
Q 007676 448 TFYFKHTHISLDGDPIY-EMLFLVRGKIWIYS 478 (593)
Q Consensus 448 ~~~~~ge~I~~~Gd~~~-~lyfI~~G~V~v~~ 478 (593)
..++||+..-..-.... .+++|++|++.+..
T Consensus 3 ~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~ 34 (71)
T PF07883_consen 3 VTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTV 34 (71)
T ss_dssp EEEETTEEEEEEEESSEEEEEEEEESEEEEEE
T ss_pred EEECCCCCCCCEECCCCCEEEEEEECCEEEEE
Confidence 46788887665555555 99999999999987
No 53
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=64.40 E-value=15 Score=31.40 Aligned_cols=44 Identities=27% Similarity=0.474 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHHHhc----------cCCCCHHHHHhhCCHHHHHHHHHH
Q 007676 375 KLSQSVQQQLKIYQRYVWRK----------PNNIDVESTLSSLPKELIRNIKHE 418 (593)
Q Consensus 375 ~lp~~L~~rv~~y~~~~~~~----------~~~~~~~~il~~Lp~~Lr~~i~~~ 418 (593)
-||.++|..|...+...-.. ....+...++..||+.||.+|...
T Consensus 52 ALP~diR~EVl~qe~~~~~~~~~~~~~~~~~~~~d~asflatl~p~LR~evL~~ 105 (108)
T PF14377_consen 52 ALPPDIREEVLAQERRERRRQERQQNARQHPQEMDNASFLATLPPELRREVLLD 105 (108)
T ss_pred hCCHHHHHHHHHHHHHHHHHhhhccccccCCCCCCHHHHHHhCCHHHHHHHhhc
Confidence 68999999999998765332 122346689999999999999754
No 54
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=64.36 E-value=9.4 Score=34.05 Aligned_cols=75 Identities=8% Similarity=0.110 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhc
Q 007676 294 FPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPI 373 (593)
Q Consensus 294 ~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~ 373 (593)
.......++++.+.+++. +-++..|.+...|++.+++.+++.++.+..-|++++.+..-. +...++.+++..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~~~-----~~~~i~sl~dL~~~ 114 (148)
T PF00060_consen 41 WRFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTVPK-----YEPPIDSLEDLANS 114 (148)
T ss_dssp HHHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-----HTSS-SSHHHHHTH
T ss_pred CcccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cCCCCCCHHHHHHC
Confidence 345667788888888776 555789999999999999999999999999999999886532 33334455555444
Q ss_pred C
Q 007676 374 E 374 (593)
Q Consensus 374 ~ 374 (593)
.
T Consensus 115 ~ 115 (148)
T PF00060_consen 115 G 115 (148)
T ss_dssp S
T ss_pred C
Confidence 3
No 55
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=53.94 E-value=77 Score=23.63 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhH---HHHHHHHHHHHhHhhc
Q 007676 332 TICGLLLLLFLFGNMQMYLESKALKS---KEMSVRMQEINEWMPI 373 (593)
Q Consensus 332 mi~G~~~~a~iig~i~~i~~~~~~~~---~~~~~~~~~i~~~m~~ 373 (593)
.+++++.|+. -+-.++.+.+.++ .+.++|+|++-+-+.+
T Consensus 16 ~vl~~~~Ftl---~IRri~~~s~~kkq~~~~~eqKLDrIIeLLEK 57 (58)
T PF13314_consen 16 IVLFGASFTL---FIRRILINSNAKKQDVDSMEQKLDRIIELLEK 57 (58)
T ss_pred HHHHHHHHHH---HHHHHHHhccccccchhHHHHHHHHHHHHHcc
Confidence 3334444443 3444454433333 3578888888776653
No 56
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=53.64 E-value=4.1e+02 Score=30.77 Aligned_cols=75 Identities=21% Similarity=0.255 Sum_probs=52.2
Q ss_pred ccccCCCcccCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH-HHHHHHHHHHHhHhhcCCCCHHHHH
Q 007676 310 SCIGQNLQTSSNSW------ENFFVILVTICGLLLLLFLFGNMQMYLESKALKS-KEMSVRMQEINEWMPIEKLSQSVQQ 382 (593)
Q Consensus 310 tTvGyGdi~p~~~~------E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~-~~~~~~~~~i~~~m~~~~lp~~L~~ 382 (593)
.|+|+||....... -.+|.+++.++...++-.+|+-|++...+....+ .+.+.+-- .---|-++.+|+.++.
T Consensus 601 ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~~Wk~Q~A-~~iL~lErs~p~~~r~ 679 (782)
T KOG3676|consen 601 FTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEKEWKLQWA-ATILMLERSLPPALRK 679 (782)
T ss_pred HhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHH-HHHHHHHhcCCHHHHH
Confidence 68999998664333 3456666667777778888888888888777666 55554443 3345567899999988
Q ss_pred HHH
Q 007676 383 QLK 385 (593)
Q Consensus 383 rv~ 385 (593)
+-+
T Consensus 680 ~~~ 682 (782)
T KOG3676|consen 680 RFR 682 (782)
T ss_pred HHh
Confidence 833
No 57
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=51.34 E-value=23 Score=20.31 Aligned_cols=18 Identities=39% Similarity=0.647 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 007676 573 QAACVIQLAWRRHRTRRK 590 (593)
Q Consensus 573 ~~~~~~q~~~~r~~~~~~ 590 (593)
.++..+|..|+.|.-|+.
T Consensus 2 ~aai~iQ~~~R~~~~Rk~ 19 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKR 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 478899999999999875
No 58
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=46.37 E-value=34 Score=22.62 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=20.5
Q ss_pred HHHHHHhHhhcCCCC-----HHHHHHHHHHH
Q 007676 363 RMQEINEWMPIEKLS-----QSVQQQLKIYQ 388 (593)
Q Consensus 363 ~~~~i~~~m~~~~lp-----~~L~~rv~~y~ 388 (593)
++.+++++++.+++| .+|.+|+.+|+
T Consensus 5 ~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~l 35 (35)
T PF02037_consen 5 TVAELKEELKERGLSTSGKKAELIERLKEHL 35 (35)
T ss_dssp HHHHHHHHHHHTTS-STSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 456889999999998 56899988875
No 59
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=45.35 E-value=1.2e+02 Score=26.69 Aligned_cols=68 Identities=12% Similarity=0.152 Sum_probs=41.6
Q ss_pred cEEEecCCCEEEcCCCCccEEEEEEEeEEEEE-eeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhccccc
Q 007676 446 KMTFYFKHTHISLDGDPIYEMLFLVRGKIWIY-SSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSL 524 (593)
Q Consensus 446 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~-~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~ 524 (593)
....+.||..+-..-....++++|++|++.+. . .+|+ ...+++|+.+---+
T Consensus 38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i----~~g~--------------~~~L~aGD~i~~~~---------- 89 (125)
T PRK13290 38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDL----ATGE--------------VHPIRPGTMYALDK---------- 89 (125)
T ss_pred EEEEECCCCcccceeCCCEEEEEEEeCEEEEEEc----CCCE--------------EEEeCCCeEEEECC----------
Confidence 34567888755332222247999999999998 5 2233 26789999876331
Q ss_pred CCCCCcceEEEEeceEEEEEE
Q 007676 525 SNIPVSTRTVQTLTDVEGFVL 545 (593)
Q Consensus 525 ~~~~~r~~tv~A~~~~~l~~L 545 (593)
.....+++.++++++.+
T Consensus 90 ----~~~H~~~N~e~~~~l~v 106 (125)
T PRK13290 90 ----HDRHYLRAGEDMRLVCV 106 (125)
T ss_pred ----CCcEEEEcCCCEEEEEE
Confidence 11334555577776665
No 60
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=44.89 E-value=82 Score=30.18 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=41.6
Q ss_pred hhCCHHHHHHHHHHHHHHHhhcCHhh-hcCcHHHHHHHHhhccEEE--ecCCCEEEcCCCCcc
Q 007676 405 SSLPKELIRNIKHELCLELLKSVEEF-KKLNEAILDALCDCVKMTF--YFKHTHISLDGDPIY 464 (593)
Q Consensus 405 ~~Lp~~Lr~~i~~~~~~~~l~~i~~F-~~~s~~~l~~L~~~l~~~~--~~~ge~I~~~Gd~~~ 464 (593)
..+|+. ..++...+....++-.-.| ...++...++.+....+.. +.+||.|+++|+..+
T Consensus 146 ~~~~~~-~~~~~~~l~~~~i~PNl~~d~~~T~~~~~~a~~~V~pv~~~V~~Ge~IV~kGe~VT 207 (222)
T PF07697_consen 146 SNLPSE-LRELLKELLSNFIRPNLIYDEEATEKAREEALASVSPVRGMVKKGEVIVRKGEIVT 207 (222)
T ss_pred cCCCHH-HHHHHHHHHHhcCCchhhcCHHHHHHHHHHHHhcCCchHhhccCCCEEecCCcEeC
Confidence 345566 3445555555555444444 3567778888889999988 999999999999764
No 61
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=44.58 E-value=50 Score=28.92 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=27.3
Q ss_pred hccEEEecCCCEE-EcCCCCccEEEEEEEeEEEEEe
Q 007676 444 CVKMTFYFKHTHI-SLDGDPIYEMLFLVRGKIWIYS 478 (593)
Q Consensus 444 ~l~~~~~~~ge~I-~~~Gd~~~~lyfI~~G~V~v~~ 478 (593)
.++...+.||+-+ .+.-...++.|+|++|...+..
T Consensus 37 ~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~ 72 (127)
T COG0662 37 SIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI 72 (127)
T ss_pred EEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE
Confidence 4556778888886 4444447999999999999998
No 62
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=42.66 E-value=41 Score=26.44 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=24.5
Q ss_pred cEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007676 464 YEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 464 ~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
++..+|++|+|.+.. .+|. ...+++||.|=
T Consensus 26 ~E~~~vleG~v~it~----~~G~--------------~~~~~aGD~~~ 55 (74)
T PF05899_consen 26 DEFFYVLEGEVTITD----EDGE--------------TVTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEEEEEEEE----TTTE--------------EEEEETTEEEE
T ss_pred CEEEEEEEeEEEEEE----CCCC--------------EEEEcCCcEEE
Confidence 888999999999998 5654 26788988875
No 63
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=40.85 E-value=73 Score=27.12 Aligned_cols=49 Identities=14% Similarity=0.145 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHHHhcc---------C-C---CCHHHHHhhCCHHHHHHHHHHHHHHH
Q 007676 375 KLSQSVQQQLKIYQRYVWRKP---------N-N---IDVESTLSSLPKELIRNIKHELCLEL 423 (593)
Q Consensus 375 ~lp~~L~~rv~~y~~~~~~~~---------~-~---~~~~~il~~Lp~~Lr~~i~~~~~~~~ 423 (593)
-||.+++.+|..-+...-... . . .-..++|..||+.||.||..+.....
T Consensus 8 aLPeDiR~Evl~~~~~~~~~~~~~~~~~~~~~~~~~~I~pefL~ALP~diR~EVl~qe~~~~ 69 (108)
T PF14377_consen 8 ALPEDIREEVLAQQQRERRAQASQRQSPQSSAPQPSQIDPEFLAALPPDIREEVLAQERRER 69 (108)
T ss_pred HCCHHHHHHHHHHHHhhccchhcccCcccccCCCccccCHHHHHhCCHHHHHHHHHHHHHHH
Confidence 589999999855444321100 0 0 01358999999999999987765543
No 64
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=40.70 E-value=1.3e+02 Score=31.95 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007676 294 FPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESK 353 (593)
Q Consensus 294 ~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~ 353 (593)
..--|+.++-+++..+.+++-++....-..-..+++++.+++.+.+-+.|..++..++--
T Consensus 97 vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~ 156 (371)
T PF10011_consen 97 VLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLIYFIHHIARSIQVS 156 (371)
T ss_pred HHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 345689999999999988887765222222377777888888888899998888776543
No 65
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=34.35 E-value=56 Score=19.77 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 007676 572 IQAACVIQLAWRRHRTRRK 590 (593)
Q Consensus 572 ~~~~~~~q~~~~r~~~~~~ 590 (593)
..++..+|+.|+.|.-|+.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~ 21 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKR 21 (26)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4578899999999999876
No 66
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=33.95 E-value=98 Score=27.00 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=38.8
Q ss_pred ccEEEecCCCEEEcCCCC-ccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecch
Q 007676 445 VKMTFYFKHTHISLDGDP-IYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEE 513 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~ 513 (593)
+....+.||..+-..-.+ .+...+|.+|++.+.. . |. ...+.+|+++-.-
T Consensus 45 ~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~----~-g~--------------~~~l~~Gd~i~ip 95 (131)
T COG1917 45 VVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQL----E-GE--------------KKELKAGDVIIIP 95 (131)
T ss_pred EEEEEECCCcccccccCCCcceEEEEEecEEEEEe----c-CC--------------ceEecCCCEEEEC
Confidence 345668899988877776 7799999999999998 3 32 2578899988754
No 67
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=28.93 E-value=59 Score=35.89 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=43.4
Q ss_pred HHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007676 300 HCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLE 351 (593)
Q Consensus 300 ~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~ 351 (593)
.|++|++...+.-|. ||.|.+...++..-++-++..++.+.--+++++.+.
T Consensus 598 NsLWFsLgAFMQQG~-DI~PRslSGRIvggvWWFFTlIIiSSYTANLAAFLT 648 (897)
T KOG1054|consen 598 NSLWFSLGAFMQQGC-DISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 648 (897)
T ss_pred HHHHHHHHHHHhcCC-CCCccccccceeccchhhhhhhhhhhhhhHHHHHHh
Confidence 689999999988777 999999999999999988888887777777777653
No 68
>COG5559 Uncharacterized conserved small protein [Function unknown]
Probab=27.76 E-value=59 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHhc
Q 007676 373 IEKLSQSVQQQLKIYQRYVWRK 394 (593)
Q Consensus 373 ~~~lp~~L~~rv~~y~~~~~~~ 394 (593)
..++|++|++.|..|.+|..++
T Consensus 8 fqkLPDdLKrEvldY~EfLlek 29 (65)
T COG5559 8 FQKLPDDLKREVLDYIEFLLEK 29 (65)
T ss_pred HHHCcHHHHHHHHHHHHHHHHH
Confidence 3589999999999999998764
No 69
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=26.97 E-value=1.5e+02 Score=26.74 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-------------hhHHHHHHHHHHHHhHhh
Q 007676 329 ILVTICGLLLLLFLFGNMQMYLESKA-------------LKSKEMSVRMQEINEWMP 372 (593)
Q Consensus 329 i~~mi~G~~~~a~iig~i~~i~~~~~-------------~~~~~~~~~~~~i~~~m~ 372 (593)
+++.++|..++||+++-+.+.-...+ -+.++|+.+++...+.++
T Consensus 10 lLi~vIglAL~aFIv~d~~~~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k 66 (145)
T PF13623_consen 10 LLIIVIGLALFAFIVGDFRSGSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYK 66 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHH
Confidence 67889999999999976643321111 134778888887775554
No 70
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=26.51 E-value=2.6e+02 Score=27.40 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=24.5
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEe
Q 007676 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYS 478 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~ 478 (593)
++...+.+|+..-.+-...+....++.|++.+..
T Consensus 31 F~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~ 64 (270)
T COG3718 31 FRLLRLAAGESATEETGDRERCLVLVTGKATVSA 64 (270)
T ss_pred EEEEEccCCCcccccCCCceEEEEEEeeeEEEee
Confidence 3445678888876555555566677799999987
No 71
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=26.35 E-value=64 Score=34.34 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=31.9
Q ss_pred hHHHHHHHHHhHhhccccCC--CcccCchhhHHHHHHHHHHHHHH
Q 007676 296 QKFLHCFRWGLRNLSCIGQN--LQTSSNSWENFFVILVTICGLLL 338 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyG--di~p~~~~E~i~~i~~mi~G~~~ 338 (593)
.....+.+.++++++|.|+. |...-+..=+++.++.|++|+.-
T Consensus 230 ~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg~~ 274 (390)
T TIGR00933 230 GALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGGCS 274 (390)
T ss_pred HHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcCCC
Confidence 34567888899999999987 44444555678888888888655
No 72
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=25.28 E-value=1.8e+02 Score=26.71 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=27.0
Q ss_pred EcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007676 457 SLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 457 ~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
+...+ .+++|++++|.+.+.. .++++ .....+++|++|=
T Consensus 43 ~H~~~-tdE~FyqleG~~~l~v----~d~g~-----------~~~v~L~eGd~fl 81 (159)
T TIGR03037 43 FHDDP-GEEFFYQLKGEMYLKV----TEEGK-----------REDVPIREGDIFL 81 (159)
T ss_pred cccCC-CceEEEEEcceEEEEE----EcCCc-----------EEEEEECCCCEEE
Confidence 44433 7999999999999977 34320 1336788888874
No 73
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=25.19 E-value=2.6e+02 Score=19.90 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
Q 007676 327 FVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQE 366 (593)
Q Consensus 327 ~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~ 366 (593)
++.+..+...+....+.+.+.++-.++..+..+++..-+.
T Consensus 9 ~s~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~~s~d 48 (53)
T PF01484_consen 9 VSTVAILSCLITVPSIYNDIQNFQSELDDEMEEFKEISDD 48 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555556666666666666666666555444
No 74
>KOG3300 consensus NADH:ubiquinone oxidoreductase, B16.6 subunit/cell death-regulatory protein [Energy production and conversion; Cell cycle control, cell division, chromosome partitioning]
Probab=25.02 E-value=2.1e+02 Score=25.17 Aligned_cols=44 Identities=11% Similarity=0.088 Sum_probs=24.3
Q ss_pred HHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHhhCC
Q 007676 364 MQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLP 408 (593)
Q Consensus 364 ~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp 408 (593)
-++++.|-.++-+=+-||..=.+++-..|.++ -..|.+|+++.|
T Consensus 62 r~kiEd~~a~nai~PiL~AErDr~~l~~lrkn-~eeEaeiMKdVP 105 (146)
T KOG3300|consen 62 RLKIEDYAARNAILPILQAERDRRFLSELRKN-LEEEAEIMKDVP 105 (146)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-HHHHHHHHccCC
Confidence 34455555555555666666555555555432 223567777776
No 75
>PF14841 FliG_M: FliG middle domain; PDB: 3HJL_A 3AJC_A 1LKV_X 3SOH_D 3USY_B 3USW_A.
Probab=24.27 E-value=1.3e+02 Score=24.03 Aligned_cols=39 Identities=15% Similarity=0.412 Sum_probs=28.6
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccE
Q 007676 401 ESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKM 447 (593)
Q Consensus 401 ~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~ 447 (593)
.++|..||+++|.++...+ --+..++++.++.+...++.
T Consensus 30 A~VL~~lp~e~r~~v~~Ri--------a~~~~v~~~~i~~ie~~L~~ 68 (79)
T PF14841_consen 30 AEVLSQLPEELRAEVVRRI--------ARLESVSPEVIEEIEEVLEE 68 (79)
T ss_dssp HHHHHTS-HHHHHHHHHHH--------HTCCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHH--------HccCCCCHHHHHHHHHHHHH
Confidence 5789999999998886654 34567888888888776654
No 76
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=23.49 E-value=98 Score=20.65 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 007676 571 NIQAACVIQLAWRRHRTRRKS 591 (593)
Q Consensus 571 r~~~~~~~q~~~~r~~~~~~~ 591 (593)
...|+.+||..|++++.|+..
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999863
No 77
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=23.33 E-value=1e+02 Score=28.08 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=33.4
Q ss_pred EEEecCCCE--EEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecc
Q 007676 447 MTFYFKHTH--ISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGE 512 (593)
Q Consensus 447 ~~~~~~ge~--I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe 512 (593)
....+||-. ...--...+++++|++|+..+.. .++. ..+++|+..|-
T Consensus 46 ~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~----d~~e---------------~~lrpGD~~gF 94 (161)
T COG3837 46 LEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE----DGGE---------------TRLRPGDSAGF 94 (161)
T ss_pred eEEeCCCCccccccccccCceEEEEEcCceEEEE----CCee---------------EEecCCceeec
Confidence 345566643 23344567899999999999988 3443 67899999983
No 78
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=23.21 E-value=88 Score=20.50 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=18.5
Q ss_pred HHHHHhHhhcCCCC-----HHHHHHHHHHH
Q 007676 364 MQEINEWMPIEKLS-----QSVQQQLKIYQ 388 (593)
Q Consensus 364 ~~~i~~~m~~~~lp-----~~L~~rv~~y~ 388 (593)
..++++.++..++| .+|++|+.+|+
T Consensus 6 ~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~~ 35 (35)
T smart00513 6 VSELKDELKKRGLSTSGTKAELVDRLLEAL 35 (35)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHhC
Confidence 45678888888887 55788877763
No 79
>PRK06771 hypothetical protein; Provisional
Probab=23.13 E-value=4.4e+02 Score=21.87 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcCCC
Q 007676 339 LLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIEKL 376 (593)
Q Consensus 339 ~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l 376 (593)
+-|+...+..+....+.+....+.+++.+.+.+.--..
T Consensus 14 ~i~i~~~l~~~~~~~~~~~k~ie~~L~~I~~~~Gi~~~ 51 (93)
T PRK06771 14 FIYIVEKLTKIEKKTDARLKRMEDRLQLITKEMGIVDR 51 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34555666677777777777777777777777654433
No 80
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=22.29 E-value=3.2e+02 Score=24.78 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 007676 204 AAFNLLLYMFAGHVFGALWYFSA 226 (593)
Q Consensus 204 ~~~~Ll~~~l~~H~~aC~wy~i~ 226 (593)
.+..++.+++..+..+|..+.-.
T Consensus 100 ~~~~~~~~~~~~a~~~~~lf~~~ 122 (200)
T PF00520_consen 100 FILLLFIVLLFFACIGYQLFGGS 122 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccccccccccccchhheecccc
Confidence 34455555555555666555555
No 81
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=22.03 E-value=1e+02 Score=25.10 Aligned_cols=14 Identities=14% Similarity=0.532 Sum_probs=12.5
Q ss_pred EEEEEEEeEEEEEe
Q 007676 465 EMLFLVRGKIWIYS 478 (593)
Q Consensus 465 ~lyfI~~G~V~v~~ 478 (593)
-.++|.+|.|++..
T Consensus 35 ~vF~V~~G~v~Vti 48 (85)
T PF11699_consen 35 MVFYVIKGKVEVTI 48 (85)
T ss_dssp EEEEEEESEEEEEE
T ss_pred EEEEEEeCEEEEEE
Confidence 57888999999998
No 82
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.91 E-value=7.5e+02 Score=28.74 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=33.2
Q ss_pred hhCCHHHHHHHHHHHHHHHhh-----cCHhhhcCcHHHHHHHHhhc
Q 007676 405 SSLPKELIRNIKHELCLELLK-----SVEEFKKLNEAILDALCDCV 445 (593)
Q Consensus 405 ~~Lp~~Lr~~i~~~~~~~~l~-----~i~~F~~~s~~~l~~L~~~l 445 (593)
++||+.||+.+..+...+... .-.+++++|++..++|+..+
T Consensus 371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL 416 (727)
T KOG0498|consen 371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL 416 (727)
T ss_pred ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence 569999999999888777654 34678999998888887766
No 83
>PHA03029 hypothetical protein; Provisional
Probab=21.78 E-value=4e+02 Score=20.91 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=25.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 007676 321 NSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKE 359 (593)
Q Consensus 321 ~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~ 359 (593)
++.|.++-++..++=.++.-.+||-+=..+.+.++.+..
T Consensus 2 ~d~ei~~~ii~~iiyiilila~igiiwg~llsi~k~raa 40 (92)
T PHA03029 2 DDAEIVFLIIAIIIYIILILAIIGIIWGFLLSINKIRAA 40 (92)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888877777776666666666666666665554443
No 84
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=21.72 E-value=1.9e+02 Score=27.21 Aligned_cols=49 Identities=4% Similarity=0.086 Sum_probs=40.9
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHH
Q 007676 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFG 344 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig 344 (593)
-.|..-+|+|++.-||-.-.|+.+.+..=|-....=.+++.++.+.+++
T Consensus 131 P~y~DFlYfsftiG~t~q~SDv~v~s~~~Rr~vl~hsllSF~Fnt~ilA 179 (180)
T PF07077_consen 131 PDYWDFLYFSFTIGMTFQTSDVNVTSRRMRRLVLLHSLLSFFFNTVILA 179 (180)
T ss_pred CCchhhhHHHHHHHhhccccCCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688889999999999989999999888888887777777777776664
No 85
>PF10047 DUF2281: Protein of unknown function (DUF2281); InterPro: IPR018739 This domain is found in putative uncharacterised proteins, though some proteins contaning this domain are described as a transcritional regulator of the Xre family.
Probab=21.09 E-value=77 Score=24.38 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhcc
Q 007676 374 EKLSQSVQQQLKIYQRYVWRKP 395 (593)
Q Consensus 374 ~~lp~~L~~rv~~y~~~~~~~~ 395 (593)
++||+++++.|.+|.+|...+.
T Consensus 10 ~~LP~~~~~Evldfi~fL~~k~ 31 (66)
T PF10047_consen 10 QQLPEELQQEVLDFIEFLLQKY 31 (66)
T ss_pred HHCCHHHHHHHHHHHHHHHHhc
Confidence 5799999999999999998764
No 86
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=20.68 E-value=1.9e+02 Score=25.81 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=35.2
Q ss_pred hccEEEecCCCEEEcCCC-CccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007676 444 CVKMTFYFKHTHISLDGD-PIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 444 ~l~~~~~~~ge~I~~~Gd-~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
.+....+.||...-..-. ..+++++|++|+..+...+ .++. ......+++|+.+=
T Consensus 31 ~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~--~~~~-----------~~~~~~l~~GD~~~ 86 (146)
T smart00835 31 SAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVD--PNGN-----------KVYDARLREGDVFV 86 (146)
T ss_pred EEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEe--CCCC-----------eEEEEEecCCCEEE
Confidence 344556788887654443 3578999999999988721 1111 12346788888775
No 87
>PF13867 SAP30_Sin3_bdg: Sin3 binding region of histone deacetylase complex subunit SAP30; PDB: 2LD7_A.
Probab=20.12 E-value=2.1e+02 Score=20.91 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=21.4
Q ss_pred HHHHHhHhhcCCCC-------HHHHHHHHHHHHHHHhccCCCCHHHHHh
Q 007676 364 MQEINEWMPIEKLS-------QSVQQQLKIYQRYVWRKPNNIDVESTLS 405 (593)
Q Consensus 364 ~~~i~~~m~~~~lp-------~~L~~rv~~y~~~~~~~~~~~~~~~il~ 405 (593)
+..+..|.+..+++ ++|...|+++|. ....+|.+++.
T Consensus 3 ~~tLrrY~~~~~l~~~~~~sK~qLa~~V~kHF~-----s~~v~E~evI~ 46 (53)
T PF13867_consen 3 TPTLRRYKKHYKLPERPRSSKEQLANAVRKHFN-----SQPVDENEVIA 46 (53)
T ss_dssp HHHHHHHHHHTT----SS--HHHHHHHHHHHHT-----T----HHHHHH
T ss_pred hHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHH
Confidence 45667788777776 567777788774 34477777754
Done!