BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007677
(593 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
N G T LH+AA ++ V+ LLK + D+ + G T + A A+ +E+V+ +K
Sbjct: 45 NDGYTPLHLAASNGHLEIVEVLLK--NGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ DNDG P+ AA G E+VE L +
Sbjct: 103 GADVNAY-DNDGHTPLHLAAKYGHLEIVEVLLK 134
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
N G T LH+AA + ++ V+ LLK D+ + G T + A +E+V+ +K
Sbjct: 45 NTGTTPLHLAAYSGHLEIVEVLLKH--GADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ + D+DGM P+ AA G E+VE L +
Sbjct: 103 GADVNAM-DSDGMTPLHLAAKWGYLEIVEVLLK 134
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 33 KLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAED 92
+L AA NG+ KD+ + G + G+T LH AAE + VK LL + + D
Sbjct: 7 RLIEAAENGNKDRVKDLLEN--GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA--D 62
Query: 93 LAKQNKIGCTAVFYAVASESVELVKATM-KGNEGIATLPDNDGMLPIVRAASLGRTEVVE 151
++ G T + YA + E+VK + KG + A D+DG P+ AA G E+V+
Sbjct: 63 PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK--DSDGRTPLHYAAENGHKEIVK 120
Query: 152 FL 153
L
Sbjct: 121 LL 122
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 31 RLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA 90
R L+ AA NG + K + K G + G+T LH AAE + VK LL + +
Sbjct: 38 RTPLHYAAENGHKEIVKLLLSK--GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA- 94
Query: 91 EDLAKQNKIGCTAVFYAVASESVELVKATM-KGNEGIATLPDNDGMLPIVRAASLGRTEV 149
D ++ G T + YA + E+VK + KG + D+DG P+ A G E+
Sbjct: 95 -DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD--PNTSDSDGRTPLDLAREHGNEEI 151
Query: 150 VEFLYRE 156
V+ L ++
Sbjct: 152 VKLLEKQ 158
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T H+A ++ VK L R DL K G T + AV + E+ + ++ N
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NG 130
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDD 165
+ D +P+ RAAS+G +++E L K+++ D
Sbjct: 131 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 69 LHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA- 127
LH A N V++LL + L ++++ G + ++V+ ++ E+ + E +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 128 -TLPDNDGMLPIVRAASLGRTEVVEFLY 154
PD+ G P A S+G EVV+ LY
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY 92
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 41 GDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIG 100
G+ V K +YD+ +ITN G T LH+A + + L++ ++ + ++K
Sbjct: 83 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKFN 140
Query: 101 CTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
+ A + S++L++ + D G P+ A + G + L
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Query: 55 GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVE 114
G I + + G+TAL +A R+D VK LL D+ Q+ G TA+ A E
Sbjct: 173 GNINAKASQAGQTALMLAVSHGRVDVVKALLA--CEADVNVQDDDGSTALMCACEHGHKE 230
Query: 115 LVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLY 154
+ + +L D DG ++ A G++E+ LY
Sbjct: 231 IAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLY 270
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 13/125 (10%)
Query: 33 KLYRAALNGDWAVAKDIYDKYEGEIGVEIT---NHGKTALHVAAEANRIDFVKKLLKRMS 89
+L AA NG+ KD+ E G ++ + G+T LH AAE + VK L+ + +
Sbjct: 7 RLIEAAENGNKDRVKDLI-----ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 90 AEDLAKQNKIGCTAVFYAVASESVELVKATM-KGNEGIATLPDNDGMLPIVRAASLGRTE 148
D+ ++ G T + +A + E+VK + KG + D+DG P+ AA G E
Sbjct: 62 --DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNAKDSDGRTPLHHAAENGHKE 117
Query: 149 VVEFL 153
VV+ L
Sbjct: 118 VVKLL 122
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 31 RLKLYRAALNGDWAVAKDIYDKYEGEIGVEIT---NHGKTALHVAAEANRIDFVKKLLKR 87
R L+ AA NG V K + K G ++ + G+T LH AAE + VK L+ +
Sbjct: 38 RTPLHHAAENGHKEVVKLLISK-----GADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 88 MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT 147
+ D+ ++ G T + +A + E+VK + + T D+DG P+ A G
Sbjct: 93 GA--DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT-SDSDGRTPLDLAREHGNE 149
Query: 148 EVVEFLYRE 156
EVV+ L ++
Sbjct: 150 EVVKLLEKQ 158
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-KGNEGIATLP 130
AAE D VK L++ + D+ + G T + +A + E+VK + KG +
Sbjct: 11 AAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD--VNAK 66
Query: 131 DNDGMLPIVRAASLGRTEVVEFLYRETKN-SLKDDDCIELLVQLIETGLYAV 181
D+DG P+ AA G EVV+ L + + + KD D L E G V
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV 118
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 59 VEITNH-GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK 117
V ++H G T LH+AA ++ V+ LLK + D+ + +G T + A +E+V+
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLK--NGADVNADDSLGVTPLHLAADRGHLEVVE 97
Query: 118 ATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+K N D++G P+ AA++G E+VE L +
Sbjct: 98 VLLK-NGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T H+A ++ VK L R DL K G T + AV + E+ + ++ N
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NG 130
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDD 165
+ D +P+ RAAS+G +++E L K+++ D
Sbjct: 131 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 69 LHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA- 127
LH A N V++LL + L ++++ G + ++V+ ++ E+ + E +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 128 -TLPDNDGMLPIVRAASLGRTEVVEFLY 154
PD+ G P A S+G EVV+ LY
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY 92
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T H+A ++ VK L R DL K G T + AV + E+ + ++ N
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE-NG 130
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDD 165
+ D +P+ RAAS+G +++E L K+++ D
Sbjct: 131 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD 171
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 69 LHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA- 127
LH A N V++LL + L ++++ G + ++V+ ++ E+ + E +
Sbjct: 6 LHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 128 -TLPDNDGMLPIVRAASLGRTEVVEFLY 154
PD+ G P A S+G EVV+ LY
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLY 92
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 33 KLYRAALNGDWAVAKDIYDKYEGEIGVEIT---NHGKTALHVAAEANRIDFVKKLLKRMS 89
+L AA NG+ KD+ E G ++ + GKT LH+AAE + VK LL + +
Sbjct: 7 RLIEAAENGNKDRVKDLL-----ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 90 AEDLAKQNKIGCTAVFYAVASESVELVKATM-KGNEGIATLPDNDGMLPIVRAASLGRTE 148
D ++ G T + A + E+VK + +G + A D+DG P+ AA G E
Sbjct: 62 --DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK--DSDGKTPLHLAAENGHKE 117
Query: 149 VVEFLYRE 156
VV+ L +
Sbjct: 118 VVKLLLSQ 125
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
GKT LH+AAE + VK LL + + D ++ G T + A + E+VK +
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGA--DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRE 156
T D+DG P+ A G EVV+ L ++
Sbjct: 128 DPNT-SDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH+AA ++ V+ LLK + D+ ++K G T + A +E+V+ +K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ D DG P+ AA G E+VE L +
Sbjct: 93 DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A + D V+ L+ + D+ ++K G T + A +E+V+ +K + D
Sbjct: 9 AARAGQDDEVRILM--ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 65
Query: 132 NDGMLPIVRAASLGRTEVVEFLYR 155
DG P+ AA G E+VE L +
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLK 89
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH+AA ++ V+ LLK + D+ ++K G T + A +E+V+ +K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ D DG P+ AA G E+VE L +
Sbjct: 93 DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A + D V+ L+ + D+ ++K G T + A +E+V+ +K + D
Sbjct: 9 AARAGQDDEVRILM--ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 65
Query: 132 NDGMLPIVRAASLGRTEVVEFLYR 155
DG P+ AA G E+VE L +
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLK 89
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 33 KLYRAALNGDWAVAKDIYDKYEGEIGVEIT---NHGKTALHVAAEANRIDFVKKLLKRMS 89
+L AA NG+ KD+ E G ++ + G+T LH AA+ + VK L+ + +
Sbjct: 7 RLIEAAENGNKDRVKDLI-----ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 90 AEDLAKQNKIGCTAVFYAVASESVELVKATM-KGNEGIATLPDNDGMLPIVRAASLGRTE 148
D+ ++ G T + YA E+VK + KG + D+DG P+ AA G E
Sbjct: 62 --DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD--VNAKDSDGRTPLHYAAKEGHKE 117
Query: 149 VVEFL 153
+V+ L
Sbjct: 118 IVKLL 122
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+T LH AA+ + VK L+ + + D+ ++ G T + YA E+VK +
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGA--DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRE 156
+ T D+DG P+ A G E+V+ L ++
Sbjct: 128 DVNT-SDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH+AA ++ V+ LLK + D+ ++K G T + A +E+V+ +K
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLK--AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ D DG P+ AA G E+VE L +
Sbjct: 105 DV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A + D V+ L+ + D+ ++K G T + A +E+V+ +K + D
Sbjct: 21 AARAGQDDEVRILM--ANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV-NAKD 77
Query: 132 NDGMLPIVRAASLGRTEVVEFLYR 155
DG P+ AA G E+VE L +
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLK 101
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
GKT LH+AA ++ V+ LLK + D+ +K+G T + A +E+V+ +K N
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKHGA--DVNAADKMGDTPLHLAALYGHLEIVEVLLK-NG 103
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
D G P+ AA G E+VE L +
Sbjct: 104 ADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGN 123
+G T LH+AA+A ++ V+ LLK + D+ Q+K G TA ++ + + +L + K N
Sbjct: 112 YGFTPLHLAADAGHLEIVEVLLKYGA--DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 71 VAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLP 130
A + + V +LL+R + D+ N G TA+ A ++V++VK ++ I P
Sbjct: 46 AACSSGDTEEVLRLLERGA--DINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQP 102
Query: 131 DNDGMLPIVRAASLGRTEVVEFL 153
DN+G +P+ AAS G ++ E+L
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYL 125
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH+AA ++ V+ LLK + D+ ++ +G T + A +E+V+ +K N
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLK--NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK-NG 103
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
D+ G P+ AA G E+VE L +
Sbjct: 104 ADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGN 123
HG T LH+AA+ ++ V+ LLK + D+ Q+K G TA ++ + + +L + K N
Sbjct: 112 HGFTPLHLAAKRGHLEIVEVLLK--NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TAL V N + ++LL R + DL +++ G + A + ++ ++ T+ N+
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQ-TLLENQ 93
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSL 161
+ DN+G LP+ AA G VVEFL + T +++
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TALH+AA +R D K+LL+ ++ D Q+ +G T + AV++++ + + ++
Sbjct: 25 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELL 170
+DG P++ AA L VE + + NS D + ++ L
Sbjct: 83 TDLDARMHDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDL 124
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TALH+AA +R D K+LL+ ++ D Q+ +G T + AV++++ + + ++
Sbjct: 22 GETALHLAARYSRSDAAKRLLE--ASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFL 153
+DG P++ AA L ++E L
Sbjct: 80 TDLDARMHDGTTPLILAARLALEGMLEDL 108
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TALH+AA +R D K+LL+ ++ D Q+ +G T + AV++++ + + ++
Sbjct: 58 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELL 170
+DG P++ AA L VE + + NS D + ++ L
Sbjct: 116 TDLDARMHDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDL 157
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+T LH+AA ++ VK LL+ + D+ ++K G T + A + +E+VK ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFL 153
+ D +G P+ AA G EVV+ L
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLL 87
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+T LH+AA ++ VK LL+ + D+ ++K G T + A + +E+VK ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFL 153
+ D +G P+ AA G EVV+ L
Sbjct: 60 DV-NAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 18 ESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEIT---NHGKTALHVAAE 74
E+ + A+ R L+ AA NG V K + E G ++ +G+T LH+AA
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAAR 77
Query: 75 ANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK 117
++ VK LL+ + D+ ++K G T + A + +E+VK
Sbjct: 78 NGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVK 118
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 6/106 (5%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TALH+AA +R D K+LL+ ++ D Q+ +G T + AV++++ + + ++
Sbjct: 57 GETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELL 170
+DG P++ AA L VE + + NS D + ++ L
Sbjct: 115 TDLDARMHDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDL 156
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH+AA+ ++ V+ LLK + D+ + G T + A + +E+V+ +K
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGA--DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ D +G P+ AA G E+VE L +
Sbjct: 105 DV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMK 121
N+G T LH+AA+ ++ V+ LLK + D+ ++ G T + A +E+V+ +K
Sbjct: 78 NYGATPLHLAADNGHLEIVEVLLKHGA--DVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 61 ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM 120
+ N G T LH+AA + ++ V+ LLK D+ + G T + A + +E+V+ +
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKH--GADVDAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
K + D G P+ AA G E+VE L +
Sbjct: 101 KYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 57 IGVEITNH-GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVEL 115
+GV +T+ G + LHVAA R D + LLK + + +N + A ++
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGA--NAGARNADQAVPLHLACQQGHFQV 134
Query: 116 VKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRE--TKNSLKDDDCIELLVQL 173
VK + N D G P++ A S G E+V L + + N+ + L +
Sbjct: 135 VKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV 193
Query: 174 IETGLYAVALQLLH 187
IE ++ V L LLH
Sbjct: 194 IEKHVFVVELLLLH 207
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 56 EIGVEITNH---GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES 112
++GV + + G + LH+AA A R + VK LL + + + QN GCT + YA +
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN--GCTPLHYAASKNR 118
Query: 113 VELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVE-FLYRETKNSLKDDD 165
E+ ++G D+ + RAA+ G +++ LY + +++D +
Sbjct: 119 HEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 171
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 100 GCTA---VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
GC + V S +E +K ++ ++ +AT D D + A S G TE+VEFL +
Sbjct: 3 GCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 56 EIGVEITNH---GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES 112
++GV + + G + LH+AA A R + VK LL + + + QN GCT + YA +
Sbjct: 62 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN--GCTPLHYAASKNR 119
Query: 113 VELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVE-FLYRETKNSLKDDD 165
E+ ++G D+ + RAA+ G +++ LY + +++D +
Sbjct: 120 HEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE 172
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 100 GCTA---VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
GC + V S +E +K ++ ++ +AT D D + A S G TE+VEFL +
Sbjct: 4 GCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 62
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 37.7 bits (86), Expect = 0.016, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TAL V N + ++LL R + DL +++ G + A + ++ ++ ++
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDL--KDRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSL 161
+ + DN+G LP+ AA G VVEFL + T +++
Sbjct: 95 DV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 6/106 (5%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G TALH+AA +R D K+LL+ ++ D Q+ +G T + AV++++ + + ++
Sbjct: 57 GATALHLAAAYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELL 170
+DG P++ AA L VE + + NS D + ++ L
Sbjct: 115 TDLDARMHDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDL 156
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
++G+T LH+AA ++ V+ LL+ + D+ + G T + A + +E+V+ +K
Sbjct: 33 HYGRTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKY 90
Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ D G+ P+ AA G E+VE L +
Sbjct: 91 GADV-NAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A + D V+ L+ + D + G T + A A +E+V+ ++ + + D
Sbjct: 9 AARAGQDDEVRILMA--NGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV-D 65
Query: 132 NDGMLPIVRAASLGRTEVVEFLYR 155
+G P+ AASLG E+VE L +
Sbjct: 66 TNGTTPLHLAASLGHLEIVEVLLK 89
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 61 ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM 120
+ +G T LH+AA ++ V+ LLK + D+ ++ G T ++ A +E+V+ +
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGA--DVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 121 K 121
K
Sbjct: 122 K 122
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 37.7 bits (86), Expect = 0.017, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG 122
++G T LH+AA +++ V+ LLK + D+ + G T + A +E+V+ +K
Sbjct: 37 DNGLTPLHLAAANGQLEIVEVLLK--NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 123 NEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ D G P+ AA G+ E+VE L +
Sbjct: 95 GADVNAY-DRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 56 EIGVEITNH---GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES 112
++GV + + G + LH+AA A R + VK LL + + + QN GCT + YA +
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQN--GCTPLHYAASKNR 118
Query: 113 VELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL--YRETKN 159
E+ ++G D+ + RAA+ G ++V L Y+ + N
Sbjct: 119 HEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 37.0 bits (84), Expect = 0.029, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TAL V N + ++LL R + DL +++ G + A + ++ ++ ++
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSL 161
+ + DN+G LP+ AA G VVEFL + T +++
Sbjct: 95 DV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TAL V N + ++LL R + DL +++ G + A + ++ ++ ++
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDL--KDRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSL 161
+ + DN+G LP+ AA G VVEFL + T +++
Sbjct: 95 DV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 37.0 bits (84), Expect = 0.032, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G+TAL V N + ++LL R + DL +++ G + A + ++ ++ ++
Sbjct: 38 GRTALQVMKLGNP-EIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSL 161
+ + DN+G LP+ AA G VVEFL + T +++
Sbjct: 95 DV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 29 TRRLKLYRAALNGDWAVAKDIYD----KYEGEIGVEITNHGKTALHVAAEANRIDFVK-- 82
+ R L++AA N D+ +Y K +G+I E+ +G TAL + A D V
Sbjct: 198 SERSALHQAAANRDFGXX--VYXLNSTKLKGDI-EELDRNGXTALXIVAHNEGRDQVASA 254
Query: 83 KLLKRMSA----EDLAKQNK---IGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGM 135
KLL A + A+++ G TA+ YA + +VK + D DG
Sbjct: 255 KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGK 314
Query: 136 LPIVRAASLGRTEVVEFLYRE 156
PI AA GR EVV +L ++
Sbjct: 315 TPIXLAAQEGRIEVVXYLIQQ 335
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 55 GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAE--DLAKQNKIGCTAVFYAVASES 112
G + + HG+TA H+A E ++ LL + DL +N G TA+ AV +E
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128
Query: 113 VELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKN 159
E V+ ++ I + G P++ A +V+ L + N
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN 175
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA-SESVELVKATMK- 121
+G AL AAE ID VK LL+ ED+ QN G TA+ AV E +L + +K
Sbjct: 105 YGGNALIPAAEKGHIDNVKLLLED-GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163
Query: 122 --GNEGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
N ++ DN G + A G TE+ + L
Sbjct: 164 LMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 58 GVEITNH---GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVE 114
G ++ H G T LH+AA + V+ LLK + D+ ++ G T + A + +E
Sbjct: 37 GADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA--DVNARDTDGWTPLHLAADNGHLE 94
Query: 115 LVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+V+ +K + D G+ P+ AA G E+VE L +
Sbjct: 95 IVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 252 IHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFI 302
+H AADRG+++ + +L++ D+ A K T F I++ N EDL + +
Sbjct: 117 LHLAADRGHLEIVEVLLKHGADV--NAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 34 LYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL 93
L+ AA NG + + + KY ++ + +G T LH+AA+ ++ V+ LLK + D+
Sbjct: 84 LHLAADNGHLEIVE-VLLKYGADVNAQDA-YGLTPLHLAADRGHLEIVEVLLKHGA--DV 139
Query: 94 AKQNKIGCTAVFYAVASESVELVKATMKGN 123
Q+K G TA ++ + + +L + K N
Sbjct: 140 NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A + D V+ L+ + D+ + G T + A E+V+ +K + D
Sbjct: 21 AARAGQDDEVRILMA--NGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARD 77
Query: 132 NDGMLPIVRAASLGRTEVVEFLYR 155
DG P+ AA G E+VE L +
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLK 101
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH A + +R D V+ LL+ + L K+N G T A + SV+L+K +
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFILAAIAGSVKLLKLFLSKGA 116
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKN 159
+ D G + AA G+ + ++FLY+ N
Sbjct: 117 DVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGAN 150
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A + D V+ L+ + D+ ++ G T + A + +E+V+ +K + D
Sbjct: 21 AARAGQDDEVRILM--ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHD 77
Query: 132 NDGMLPIVRAASLGRTEVVEFLYR 155
NDG P+ AA G E+VE L +
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLLK 101
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGN 123
+G T LH+AA ++ V+ LLK + D+ + G T + A +E+V+ +K
Sbjct: 46 YGDTPLHLAARVGHLEIVEVLLK--NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG 103
Query: 124 EGIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ D G P+ AA G E+VE L +
Sbjct: 104 ADV-NADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A + D V+ L+ + D+ ++ G T + A +E+V+ +K + L D
Sbjct: 21 AARAGQDDEVRILMA--NGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL-D 77
Query: 132 NDGMLPIVRAASLGRTEVVEFLYRETKNSLKDD 164
G P+ AA G E+VE L + + DD
Sbjct: 78 FSGSTPLHLAAKRGHLEIVEVLLKYGADVNADD 110
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 52 KYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA 103
KY ++ + T G T LH+AA+ ++ V+ LLK D+ Q+K G TA
Sbjct: 101 KYGADVNADDTI-GSTPLHLAADTGHLEIVEVLLKY--GADVNAQDKFGKTA 149
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 56 EIGVEITNH---GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASES 112
++GV + + G + LH+AA A + VK LL + + + QN GCT + YA +
Sbjct: 61 QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN--GCTPLHYAASKNR 118
Query: 113 VELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL--YRETKN 159
E+ ++G D+ + RAA+ G ++V L Y+ + N
Sbjct: 119 HEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN 166
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH A + +R D V+ LL+ + L K+N G T A + SV+L+K +
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKN--GATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKN 159
+ D G + AA G+ + ++FLY+ N
Sbjct: 97 DVNEC-DFYGFTAFMEAAVYGKVKALKFLYKRGAN 130
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH+AA ++ V+ LLK D+ + +G T + A +E+V+ +K
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKH--GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ + D G P+ AA +G E+VE L +
Sbjct: 105 DVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGI 126
T LH AA NRID VK + + + D + + T + +A + +V MK
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGD-LNSTPLHWATRQGHLSMVVQLMKYGAD- 101
Query: 127 ATLPDNDGMLPIVRAASLGRTEVVEFL 153
+L D +G I AA G T +V +L
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYL 128
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A R D V+ L+ + D+ ++ G T + A + +E+V+ +K + + D
Sbjct: 21 AARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV-D 77
Query: 132 NDGMLPIVRAASLGRTEVVEFLYR 155
+ GM P+ AA G E+VE L +
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLK 101
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 28/246 (11%)
Query: 61 ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM 120
+T G T LHVAA+ ++ + LL+R + + A +N G T + AV ++++VK +
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN--GLTPLHVAVHHNNLDIVKLLL 199
Query: 121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFL--YRETKNSLKDDDCIELLVQLIETGL 178
G P +G P+ AA + EV L Y + N+ L + E
Sbjct: 200 P-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 179 YAVALQLLHDHRYLATKRAKNKE--TALHVLARKNLGDKDRKNKEAETLVESLWEEVILL 236
VAL L A NK T LH++A+ E V +V++
Sbjct: 259 EMVALLL----SKQANGNLGNKSGLTPLHLVAQ-----------EGHVPV----ADVLIK 299
Query: 237 SKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLE 296
+ +H A+ GN++ + L++ D+ A K Y+ H A +
Sbjct: 300 HGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV--NAKTKLGYSPLHQAAQQGHT 357
Query: 297 DLFKFI 302
D+ +
Sbjct: 358 DIVTLL 363
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH+AA ++ V+ LLK D+ + G T + A +E+V+ +K
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKH--GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYR 155
+ + D G P+ AA +G E+VE L +
Sbjct: 105 DVNAV-DTWGDTPLHLAAIMGHLEIVEVLLK 134
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
G T LH+AA+ + V+ LL D+ Q+ G T + +A + V+LVK +
Sbjct: 77 GSTCLHLAAKKGHYEVVQYLLSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFL 153
I + DN+ + + AA G ++ E L
Sbjct: 136 DI-NIRDNEENICLHWAAFSGCVDIAEIL 163
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 66 KTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEG 125
++ LH AAEA +D L++ + D +++ T + A + +E VK +K
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR--TPLMEAAENNHLEAVKYLIKAG-A 68
Query: 126 IATLPDNDGMLPIVRAASLGRTEVVEFL 153
+ D +G + AA G EVV++L
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYL 96
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIG 100
HG + LH+AA NR D V L R S D+ +NK G
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDS--DVTLKNKEG 210
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A R D V+ L+ + D+ + +G T + A +E+V+ +K N D
Sbjct: 21 AARAGRDDEVRILMA--NGADVNAADVVGWTPLHLAAYWGHLEIVEVLLK-NGADVNAYD 77
Query: 132 NDGMLPIVRAASLGRTEVVEFLYRETKN-SLKDDDCI 167
G P+ AA G E+VE L + + + KDD+ I
Sbjct: 78 TLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI 114
>pdb|2QSX|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Lysr From Vibrio Parahaemolyticus
pdb|2QSX|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Lysr From Vibrio Parahaemolyticus
Length = 218
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 80 FVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV 139
F+ + + E ++N + C +++V E L ++ +G+A LPD I+
Sbjct: 112 FIPQTTRPQLWEQFKQENDLECPITYHSVGFEHFYLACEAVRXEKGLALLPDFXAQFSIL 171
Query: 140 RA 141
R
Sbjct: 172 RG 173
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
GKTAL V + +LLK+ ++ ++ Q+ G + V A + ++ +K ++
Sbjct: 36 GKTALQVMMFGSTA-IALELLKQGASPNV--QDTSGTSPVHDAARTGFLDTLKVLVEHGA 92
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKD 163
+ +PD G LPI A G T VV FL E+ +D
Sbjct: 93 DV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 130
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 72 AAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD 131
AA A + D V+ L+ + D+ ++K+G T + A ++ +E+V+ +K + + D
Sbjct: 21 AARAGQDDEVRILMA--NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-D 77
Query: 132 NDGMLPIVRAASLGRTEVVEFLYR 155
G P+ A G E+VE L +
Sbjct: 78 AIGETPLHLVAMYGHLEIVEVLLK 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM-KGN 123
G T LH AA+ + VKKLL + + D+ ++K G T + A + E+VK + KG
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGA--DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 124 EGIATLPDNDGMLPIVRAASLGRTEVVEFL 153
+ DG P A G E+V+ L
Sbjct: 67 D--VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 252 IHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADL 311
+H+AA G+ + + L+ + D+ A KD T H+A KN ++ K + + AD
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPLHLAAKNGHAEIVKLL--LAKGAD- 67
Query: 312 MVDCTDEKGNNILHLA 327
V+ + GN HLA
Sbjct: 68 -VNARSKDGNTPEHLA 82
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.3 bits (72), Expect = 0.81, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124
GKTAL V + +LLK+ ++ ++ Q+ G + V A + ++ +K ++
Sbjct: 42 GKTALQVMMFGSTA-IALELLKQGASPNV--QDTSGTSPVHDAARTGFLDTLKVLVEHGA 98
Query: 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKD 163
+ +PD G LPI A G T VV FL E+ +D
Sbjct: 99 DV-NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRD 136
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 78 IDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLP 137
D V++++ + +D + N G TA+ AV + E+VK ++ + D+DG P
Sbjct: 50 FDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTP 106
Query: 138 IVRAASLGRTEVVEFL 153
+ AAS +V +FL
Sbjct: 107 LHCAASCNNVQVCKFL 122
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 78 IDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLP 137
D V++++ + +D + N G TA+ AV + E+VK ++ + D+DG P
Sbjct: 50 FDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA-DSDGWTP 106
Query: 138 IVRAASLGRTEVVEFL 153
+ AAS +V +FL
Sbjct: 107 LHCAASCNNVQVCKFL 122
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMK 121
N G+T LH+AA A+ ++ V+ LLK D+ Q+K G TA ++ + + +L + K
Sbjct: 78 NTGRTPLHLAAWADHLEIVEVLLKH--GADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 60 EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
+I T LH AA NR+ V+ LL+ D+ ++K G + A + E+ +
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNACSYGHYEVAELL 96
Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDD 164
+K + + + D P+ AA+ G+ E+ + L + + K +
Sbjct: 97 VK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 140
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 60 EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
+I T LH AA NR+ V+ LL+ D+ ++K G + A + E+ +
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNACSYGHYEVAELL 94
Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDD 164
+K + + + D P+ AA+ G+ E+ + L + + K +
Sbjct: 95 VK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 138
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 60 EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKAT 119
+I T LH AA NR+ V+ LL+ D+ ++K G + A + E+ +
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNACSYGHYEVAELL 98
Query: 120 MKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDD 164
+K + + + D P+ AA+ G+ E+ + L + + K +
Sbjct: 99 VK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN 142
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 247 QPRELIHDAADRGNVQFLSILIREYPDLMWKAD----KKDNYTIFH-------IAVKNRL 295
Q +H A ++ ++Q + +L+ D+ +A +K T F+ +A +
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 296 EDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKA 355
D+ ++ + P ++ TD GN +LH +A N S + M LL A
Sbjct: 149 WDVVTYLLE-NPHQPASLEATDSLGNTVLHALVMIADNSPEN--SALVIHMYDGLLQMGA 205
Query: 356 VKDVVPP-KLRDAKNNKGLTPKALFSKE 382
+ P +L + N++GLTP L +KE
Sbjct: 206 --RLCPTVQLEEISNHQGLTPLKLAAKE 231
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 65 GKTALHVAAEANRIDFVKKLLK---RMSAEDLAKQNKIGCTAVFYAVASESVELVKATMK 121
G+TALH+AA + ++ L++ + E + + G TA+ AV +++V LV+A +
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 122 GNEGIAT---------LPDN---DGMLPIVRAASLGRTEVVEFL 153
++ P N G P+ AA +G E+V L
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL 140
>pdb|2BDR|A Chain A, Crystal Structure Of The Putative Ureidoglycolate
Hydrolase Pp4288 From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr49
pdb|2BDR|B Chain B, Crystal Structure Of The Putative Ureidoglycolate
Hydrolase Pp4288 From Pseudomonas Putida, Northeast
Structural Genomics Target Ppr49
Length = 175
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 528 FVKQHFRFFYDVLRSTYASHYPIPKGKTGLFHKAGETKTTKHQWKS--KLFNGSNLAIPL 585
K+ F F DV+ + + H+ I G T FHK +T + + K+ +F PL
Sbjct: 9 LTKEAFAQFGDVIETDGSDHFXINNGSTXRFHKLATVETAEPEDKAIISIFRADAQDXPL 68
Query: 586 T 586
T
Sbjct: 69 T 69
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 69 LHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK 117
+HVAA + D V++L++ + + QN+ GCTA+ A V+ K
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVDTAK 70
>pdb|3VO1|A Chain A, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
pdb|3VO1|B Chain B, Crystal Structure Of Zea Mays Leaf Ferredoxin-Nadp+
Reductase Ii
Length = 314
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 259 GNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDE 318
G ++ + EY + +W+ KKDN ++ +K +E K I D+M+D +
Sbjct: 242 GEKMYIQTRMAEYKEELWELLKKDNTYVYMCGLKG-ME---------KGIDDIMLDLAAK 291
Query: 319 KGNNILHLAGELAPQHRLNV 338
G N L +L + NV
Sbjct: 292 DGINWLDYKKQLKKSEQWNV 311
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 247 QPRELIHDAADRGNVQFLSILIREYPDLMWKAD----KKDNYTIFH-------IAVKNRL 295
Q +H A ++ ++Q + +L+ D+ +A +K T F+ +A +
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 296 EDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSGSALQMQRELLWFKA 355
D+ ++ + P ++ TD GN +LH +A N S + M LL A
Sbjct: 162 WDVVTYLLE-NPHQPASLEATDSLGNTVLHALVMIADNSPEN--SALVIHMYDGLLQMGA 218
Query: 356 VKDVVPP-KLRDAKNNKGLTPKALFSKE 382
+ P +L + N++GLTP L +KE
Sbjct: 219 --RLCPTVQLEEISNHQGLTPLKLAAKE 244
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGN 123
G T LH+AAE ++ V+ LLK D+ Q+K G TA ++ + + +L + K N
Sbjct: 113 GYTPLHLAAEDGHLEIVEVLLKY--GADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|2IML|A Chain A, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|B Chain B, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|C Chain C, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
pdb|2IML|D Chain D, Crystal Structure Of A Hypothetical Protein From
Archaeoglobus Fulgidus Binding Riboflavin 5'-Phosphate
Length = 199
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 161 LKDDDCIELLVQLIETGLYAVALQLLHDHRYLATK 195
L D + IE V+ I GL AV L+H RY+A K
Sbjct: 118 LTDGEIIEKRVRAINRGLSAVIEALVHATRYVAIK 152
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 52 KYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE 111
KY ++ E N G T LH+AA ++ V+ LLK + D+ Q+K G TA ++ +
Sbjct: 68 KYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKHGA--DVNAQDKFGKTAFDISIDNG 124
Query: 112 SVELVKATMKGN 123
+ +L + K N
Sbjct: 125 NEDLAEILQKLN 136
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGI 126
T LH+AA NR+ V+ LL+ D+ ++K G + A + E+ + +K +
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 127 ATLPDNDGMLPIVRAASLGRTEVVEFL 153
+ D P+ AAS R EV L
Sbjct: 118 NAM-DLWQFTPLHEAASKNRVEVCSLL 143
>pdb|2V4C|A Chain A, Structure Of Sialic Acid Binding Protein (Siap) In The
Presence Of Kdn
Length = 309
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 8/107 (7%)
Query: 229 LWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFH 288
L +++ L+S + EL E ++++ DAA+ + + DL+ +K+
Sbjct: 211 LNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQ------- 263
Query: 289 IAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHR 335
VK DL F +KP V T +KG + L + P H
Sbjct: 264 -GVKITHPDLVPFKESMKPYYAEFVKQTGQKGESALKQIEAINPHHH 309
>pdb|2WYK|A Chain A, Siap In Complex With Neu5gc
Length = 308
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 229 LWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFH 288
L +++ L+S + EL E ++++ DAA+ + + DL+ +K+
Sbjct: 211 LNDQLYLVSNETYKELPEDLQKVVKDAAENAAKYHTKLFVDGEKDLVTFFEKQ------- 263
Query: 289 IAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQH 334
VK DL F +KP V T +KG + L + P H
Sbjct: 264 -GVKITHPDLVPFKESMKPYYAEFVKQTGQKGESALKQIEAINPHH 308
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,841,914
Number of Sequences: 62578
Number of extensions: 613802
Number of successful extensions: 1925
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 1746
Number of HSP's gapped (non-prelim): 196
length of query: 593
length of database: 14,973,337
effective HSP length: 104
effective length of query: 489
effective length of database: 8,465,225
effective search space: 4139495025
effective search space used: 4139495025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)