Query 007677
Match_columns 593
No_of_seqs 483 out of 3223
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:45:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 5.1E-49 1.8E-53 417.0 30.4 330 25-381 42-386 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 6.3E-49 2.2E-53 416.3 26.9 332 24-382 8-354 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.2E-43 7.4E-48 360.6 25.2 291 23-339 18-320 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 1.6E-43 5.5E-48 362.8 21.0 305 26-387 20-328 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 2E-42 6.9E-47 343.7 26.1 270 27-317 2-283 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 2.2E-40 7.5E-45 329.0 20.7 251 64-339 4-272 (285)
7 3d9h_A CDNA FLJ77766, highly s 100.0 6.9E-40 2.4E-44 326.3 20.5 254 27-305 12-275 (285)
8 2xai_A ASB-9, ankyrin repeat a 100.0 1.3E-39 4.6E-44 320.0 19.5 247 29-334 2-252 (261)
9 3utm_A Tankyrase-1; tankyrase, 100.0 6.4E-39 2.2E-43 328.6 24.4 272 23-329 51-322 (351)
10 2fo1_E LIN-12 protein; beta-ba 100.0 5.3E-40 1.8E-44 340.1 14.4 259 25-308 89-371 (373)
11 2fo1_E LIN-12 protein; beta-ba 100.0 2.5E-40 8.6E-45 342.5 11.4 260 61-339 90-365 (373)
12 1oy3_D Transcription factor in 100.0 5.2E-39 1.8E-43 319.0 19.1 248 62-332 6-270 (282)
13 3d9h_A CDNA FLJ77766, highly s 100.0 1.1E-38 3.9E-43 317.5 18.8 244 62-330 12-265 (285)
14 4g8k_A 2-5A-dependent ribonucl 100.0 1.8E-37 6.3E-42 316.6 26.4 273 9-310 39-328 (337)
15 3ljn_A Hypothetical protein; a 100.0 3.1E-39 1.1E-43 333.4 12.5 256 62-335 17-304 (364)
16 2xai_A ASB-9, ankyrin repeat a 100.0 4E-38 1.4E-42 309.5 18.1 204 9-234 17-221 (261)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-38 4.2E-43 311.6 14.1 226 56-338 2-241 (253)
18 3ljn_A Hypothetical protein; a 100.0 9.9E-39 3.4E-43 329.6 13.8 261 25-308 15-314 (364)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 5.1E-38 1.7E-42 307.2 17.3 231 24-307 4-247 (253)
20 3b7b_A Euchromatic histone-lys 100.0 2.6E-37 8.9E-42 298.8 21.0 216 62-333 8-223 (237)
21 1k1a_A B-cell lymphoma 3-encod 100.0 1.7E-37 5.9E-42 300.7 17.0 225 25-339 4-235 (241)
22 1k1a_A B-cell lymphoma 3-encod 100.0 2.3E-37 7.8E-42 299.8 17.8 194 62-339 6-202 (241)
23 3aji_A 26S proteasome non-ATPa 100.0 1.7E-36 5.8E-41 291.8 18.9 226 28-308 4-230 (231)
24 1s70_B 130 kDa myosin-binding 100.0 2.5E-37 8.4E-42 309.9 13.4 236 64-330 39-275 (299)
25 3aji_A 26S proteasome non-ATPa 100.0 2.6E-36 8.8E-41 290.6 19.7 223 62-340 3-225 (231)
26 2dzn_A Probable 26S proteasome 100.0 8.9E-36 3E-40 286.1 19.8 212 30-330 2-218 (228)
27 1oy3_D Transcription factor in 100.0 4.4E-36 1.5E-40 297.8 17.7 250 24-295 3-270 (282)
28 3b7b_A Euchromatic histone-lys 100.0 1.8E-35 6E-40 285.9 20.9 227 23-304 4-231 (237)
29 4b93_B Ankyrin repeat domain-c 100.0 1.5E-36 5.1E-41 299.0 12.3 130 25-158 6-143 (269)
30 3kea_A K1L; tropism, ANK repea 100.0 3.2E-35 1.1E-39 292.5 19.9 236 38-308 7-246 (285)
31 2dzn_A Probable 26S proteasome 100.0 1E-34 3.5E-39 278.7 22.5 198 9-208 16-216 (228)
32 4b93_B Ankyrin repeat domain-c 100.0 3.8E-36 1.3E-40 296.2 11.8 215 62-332 8-230 (269)
33 1s70_B 130 kDa myosin-binding 100.0 9.1E-36 3.1E-40 298.5 14.7 250 25-305 35-286 (299)
34 3eu9_A Huntingtin-interacting 100.0 6.4E-35 2.2E-39 282.0 19.5 232 25-309 4-236 (240)
35 1sw6_A Regulatory protein SWI6 100.0 2.1E-36 7.3E-41 307.1 9.3 267 27-331 20-327 (327)
36 3kea_A K1L; tropism, ANK repea 100.0 2E-34 6.7E-39 286.8 18.3 221 24-274 25-247 (285)
37 2f8y_A Notch homolog 1, transl 100.0 1.7E-34 5.8E-39 276.3 16.3 216 41-309 2-217 (223)
38 3eu9_A Huntingtin-interacting 100.0 1E-33 3.6E-38 273.4 21.5 198 8-212 22-222 (240)
39 1ikn_D Protein (I-kappa-B-alph 100.0 2.8E-34 9.5E-39 277.5 8.4 222 62-331 5-230 (236)
40 2f8y_A Notch homolog 1, transl 100.0 2.6E-33 8.8E-38 268.0 12.6 208 76-339 2-210 (223)
41 2rfa_A Transient receptor pote 100.0 1.7E-32 5.8E-37 264.1 18.4 206 65-308 3-222 (232)
42 2rfa_A Transient receptor pote 100.0 1.1E-31 3.8E-36 258.4 22.0 197 29-239 2-226 (232)
43 3hra_A Ankyrin repeat family p 100.0 1.2E-31 4.1E-36 252.0 19.4 200 27-306 2-201 (201)
44 1sw6_A Regulatory protein SWI6 100.0 4.4E-33 1.5E-37 282.7 9.2 238 23-294 45-327 (327)
45 3hra_A Ankyrin repeat family p 100.0 4.9E-31 1.7E-35 247.8 19.5 174 10-188 20-200 (201)
46 1ikn_D Protein (I-kappa-B-alph 100.0 3.9E-33 1.3E-37 269.4 4.8 216 25-292 3-228 (236)
47 2etb_A Transient receptor pote 100.0 7.6E-31 2.6E-35 256.6 16.8 196 29-239 1-250 (256)
48 2pnn_A Transient receptor pote 100.0 1.2E-30 4.2E-35 257.7 17.4 201 24-238 7-262 (273)
49 2etb_A Transient receptor pote 100.0 5E-31 1.7E-35 257.9 13.7 196 64-271 1-244 (256)
50 2pnn_A Transient receptor pote 100.0 1.4E-30 4.8E-35 257.3 13.2 210 62-272 10-257 (273)
51 4gpm_A Engineered protein OR26 100.0 1.2E-29 4E-34 231.0 18.0 153 32-189 6-159 (169)
52 3jxi_A Vanilloid receptor-rela 100.0 7.3E-30 2.5E-34 250.2 15.8 198 27-238 2-253 (260)
53 2aja_A Ankyrin repeat family p 100.0 5.4E-31 1.8E-35 270.3 4.2 261 30-337 65-366 (376)
54 4gpm_A Engineered protein OR26 100.0 5.2E-29 1.8E-33 226.7 16.5 158 67-238 6-164 (169)
55 3jxi_A Vanilloid receptor-rela 100.0 2.6E-29 8.9E-34 246.2 11.8 208 62-272 2-249 (260)
56 3v30_A DNA-binding protein rfx 100.0 2.7E-28 9.1E-33 223.2 17.6 169 30-203 2-171 (172)
57 3v31_A Ankyrin repeat family A 100.0 1.1E-27 3.8E-32 217.9 17.3 159 29-192 2-161 (167)
58 2rfm_A Putative ankyrin repeat 100.0 9E-28 3.1E-32 223.9 16.9 159 25-188 30-189 (192)
59 4hbd_A KN motif and ankyrin re 99.9 5.1E-28 1.7E-32 239.2 13.2 192 27-232 73-272 (276)
60 4hbd_A KN motif and ankyrin re 99.9 2.7E-28 9.3E-33 241.2 11.0 192 65-306 76-273 (276)
61 2rfm_A Putative ankyrin repeat 99.9 3.1E-27 1E-31 220.3 16.6 162 57-233 28-190 (192)
62 2y1l_E Darpin-8.4; hydrolase-i 99.9 5E-27 1.7E-31 214.2 17.5 159 25-188 9-168 (169)
63 2vge_A RELA-associated inhibit 99.9 2.6E-29 8.9E-34 241.2 2.0 200 47-338 2-206 (229)
64 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.9E-27 2E-31 210.5 15.8 154 29-188 1-155 (156)
65 2aja_A Ankyrin repeat family p 99.9 1.7E-29 5.7E-34 259.2 -1.6 258 27-304 89-370 (376)
66 1ihb_A P18-INK4C(INK6), cyclin 99.9 6E-27 2E-31 211.9 15.3 155 29-189 4-160 (162)
67 3twr_A Tankyrase-2; ankyrin re 99.9 2.5E-27 8.7E-32 215.1 12.6 159 25-188 3-162 (165)
68 3v30_A DNA-binding protein rfx 99.9 1.3E-26 4.5E-31 212.0 17.0 163 65-240 2-165 (172)
69 3v31_A Ankyrin repeat family A 99.9 1.8E-26 6.2E-31 209.9 17.4 160 64-237 2-162 (167)
70 1awc_B Protein (GA binding pro 99.9 2E-26 7E-31 206.4 17.0 150 30-185 2-152 (153)
71 3f6q_A Integrin-linked protein 99.9 4.9E-27 1.7E-31 216.3 13.1 166 27-197 2-168 (179)
72 1ihb_A P18-INK4C(INK6), cyclin 99.9 9.9E-27 3.4E-31 210.4 13.2 159 63-235 3-162 (162)
73 2vge_A RELA-associated inhibit 99.9 2.5E-28 8.7E-33 234.2 1.7 182 23-212 14-200 (229)
74 2y1l_E Darpin-8.4; hydrolase-i 99.9 5.3E-26 1.8E-30 207.3 15.3 158 62-233 11-169 (169)
75 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1E-26 3.5E-31 224.9 9.1 184 63-332 3-193 (239)
76 3twr_A Tankyrase-2; ankyrin re 99.9 6.2E-26 2.1E-30 205.9 11.1 159 62-234 5-164 (165)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.4E-26 4.7E-31 223.9 7.0 179 27-212 2-193 (239)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.1E-25 7.3E-30 200.3 14.1 152 65-231 2-154 (156)
79 3f6q_A Integrin-linked protein 99.9 1.1E-25 3.7E-30 207.3 12.1 164 62-238 2-166 (179)
80 1awc_B Protein (GA binding pro 99.9 3.8E-25 1.3E-29 198.1 15.2 150 65-229 2-152 (153)
81 1d9s_A Cyclin-dependent kinase 99.9 1.1E-24 3.9E-29 190.9 11.5 130 23-158 5-135 (136)
82 2jab_A H10-2-G3; HER2, darpin, 99.9 7.4E-24 2.5E-28 185.7 14.0 128 25-157 9-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 1.3E-24 4.5E-29 195.3 9.3 141 25-171 7-149 (156)
84 3t8k_A Uncharacterized protein 99.9 1.3E-24 4.3E-29 201.1 7.3 154 29-188 5-176 (186)
85 1d9s_A Cyclin-dependent kinase 99.9 1.5E-23 5E-28 183.8 12.0 130 54-188 2-133 (136)
86 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.1E-23 1.7E-27 177.2 14.7 125 29-158 1-125 (126)
87 1bi7_B P16INK4A, MTS1, multipl 99.9 1.4E-23 4.9E-28 188.5 9.8 141 62-207 9-151 (156)
88 3t8k_A Uncharacterized protein 99.9 4.8E-23 1.6E-27 190.4 9.5 159 65-238 6-182 (186)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 1.8E-22 6E-27 176.8 11.8 124 62-188 11-135 (136)
90 3c5r_A BARD-1, BRCA1-associate 99.9 3.7E-23 1.3E-27 181.3 7.2 128 25-157 5-132 (137)
91 3deo_A Signal recognition part 99.9 1.3E-22 4.5E-27 187.4 10.6 141 26-188 40-181 (183)
92 1n0r_A 4ANK, 4 ankyrin repeats 99.9 9.1E-22 3.1E-26 169.3 14.4 123 64-189 1-124 (126)
93 3ui2_A Signal recognition part 99.9 2.2E-22 7.6E-27 194.9 11.3 142 25-188 40-182 (244)
94 2b0o_E UPLC1; arfgap, structur 99.9 6.4E-22 2.2E-26 197.5 13.9 122 32-157 153-282 (301)
95 3aaa_C Myotrophin, protein V-1 99.9 3.2E-22 1.1E-26 171.8 9.4 114 27-145 4-117 (123)
96 3c5r_A BARD-1, BRCA1-associate 99.9 2.2E-22 7.4E-27 176.4 5.6 124 62-188 7-131 (137)
97 3ehr_A Osteoclast-stimulating 99.9 4.3E-22 1.5E-26 190.0 8.0 129 26-158 69-197 (222)
98 3ui2_A Signal recognition part 99.8 9.5E-22 3.2E-26 190.4 8.4 171 28-235 13-185 (244)
99 3deo_A Signal recognition part 99.8 9.7E-22 3.3E-26 181.5 7.6 138 62-231 41-180 (183)
100 3aaa_C Myotrophin, protein V-1 99.8 1.5E-21 5E-26 167.7 7.9 110 62-174 4-114 (123)
101 2b0o_E UPLC1; arfgap, structur 99.8 1.4E-20 4.7E-25 187.8 12.9 138 65-212 151-298 (301)
102 3ehr_A Osteoclast-stimulating 99.8 3.6E-21 1.2E-25 183.5 7.0 124 62-188 70-195 (222)
103 3jue_A Arfgap with coiled-coil 99.8 3.6E-20 1.2E-24 189.1 13.8 127 27-158 196-325 (368)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 4.2E-20 1.4E-24 150.0 11.0 92 64-158 1-92 (93)
105 1dcq_A PYK2-associated protein 99.8 7.9E-20 2.7E-24 180.2 15.0 126 29-158 129-262 (278)
106 3lvq_E ARF-GAP with SH3 domain 99.8 2.2E-19 7.6E-24 192.3 16.6 136 29-174 131-275 (497)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.5E-19 5E-24 146.8 10.5 93 29-125 1-93 (93)
108 1dcq_A PYK2-associated protein 99.8 5.4E-19 1.8E-23 174.2 13.4 192 96-308 62-263 (278)
109 3jue_A Arfgap with coiled-coil 99.8 6.7E-19 2.3E-23 179.7 11.9 145 63-210 197-347 (368)
110 2l6b_A NR1C; ankyrin, consensu 99.8 3E-19 1E-23 151.1 6.8 106 27-137 6-111 (115)
111 2l6b_A NR1C; ankyrin, consensu 99.8 4.3E-19 1.5E-23 150.2 7.6 105 62-169 6-111 (115)
112 3lvq_E ARF-GAP with SH3 domain 99.7 4.9E-18 1.7E-22 181.8 13.7 136 65-210 132-277 (497)
113 2zgd_A 3 repeat synthetic anky 99.7 2.1E-17 7.2E-22 138.5 9.1 89 62-153 21-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 1.2E-16 4E-21 133.9 9.8 92 24-119 18-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 82.1 20 0.0007 35.2 13.9 26 162-187 213-238 (351)
116 3k49_A MRNA-binding protein PU 81.2 9.4 0.00032 38.0 11.1 186 27-212 39-234 (369)
117 3gvo_A Pumilio 2, pumilio homo 78.0 5.2 0.00018 39.5 7.9 185 27-211 34-228 (351)
118 3k49_A MRNA-binding protein PU 45.0 87 0.003 30.7 9.6 152 25-178 73-234 (369)
119 4g26_A Pentatricopeptide repea 42.9 39 0.0013 35.0 6.8 91 167-270 109-200 (501)
120 2yka_B ORF57 protein, 52 kDa i 44.3 6.7 0.00023 21.3 0.0 9 584-592 2-10 (26)
121 3bwt_A Protein PUF4; pumilio, 38.0 29 0.001 33.6 4.7 63 25-87 19-82 (333)
122 3bwt_A Protein PUF4; pumilio, 34.5 77 0.0026 30.6 7.1 27 25-51 55-81 (333)
123 3zrh_A Ubiquitin thioesterase 27.5 1.2E+02 0.004 30.1 6.7 52 35-87 27-91 (454)
124 3mkq_B Coatomer subunit alpha; 27.5 3E+02 0.01 23.8 9.2 134 30-190 8-142 (177)
125 1gp8_A Protein (scaffolding pr 23.0 58 0.002 20.2 2.3 18 33-50 16-33 (40)
126 3v71_A PUF (pumilio/FBF) domai 21.8 1.8E+02 0.006 28.7 7.1 87 26-112 67-157 (382)
127 3k62_A FEM-3 mRNA-binding fact 20.1 4.1E+02 0.014 26.4 9.5 233 25-270 35-311 (412)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.1e-49 Score=416.98 Aligned_cols=330 Identities=20% Similarity=0.216 Sum_probs=182.9
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
..|..|.||||.|+..|+.+++++|++. +.+++.+ +..|.||||+|+..|+.++|++|+++ +++++.+|..|.|||
T Consensus 42 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L 117 (437)
T 1n11_A 42 VSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPL 117 (437)
T ss_dssp CSSSCCCCHHHHHHHHTCHHHHHHHHHH-TCCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHhC--CCCCCCCCCCCCcHH
Confidence 3344455555555555555555555554 4444444 44555555555555555555555555 455555555555555
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677 105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL 183 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 183 (593)
|+|+..|+.++++.|++++++. ...+..|.||||+|+..|+.+++++|++++. .+..+..|.||||.|+..++.++++
T Consensus 118 ~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 196 (437)
T 1n11_A 118 HIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196 (437)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 5555555555555555555443 3444455555555555555555555555554 4444555555555555555555555
Q ss_pred HHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHH
Q 007677 184 QLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQF 263 (593)
Q Consensus 184 ~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~ 263 (593)
.|+++ +...+..+.+|.||||+|+..++ .++++.|++.|.+++..+ ..|.||||+|+..|+.++
T Consensus 197 ~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~----------~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~g~~~~ 260 (437)
T 1n11_A 197 LLLPR-GGSPHSPAWNGYTPLHIAAKQNQ----------VEVARSLLQYGGSANAES-----VQGVTPLHLAAQEGHAEM 260 (437)
T ss_dssp HHGGG-TCCSCCCCTTCCCHHHHHHHTTC----------HHHHHHHHHTTCCTTCCC-----TTCCCHHHHHHHTTCHHH
T ss_pred HHHhC-CCCCCCcCCCCCCHHHHHHHcCC----------HHHHHHHHHcCCCCCCCC-----CCCCCHHHHHHHCCCHHH
Confidence 55554 23333444455555555555555 566666666655544332 456667777777677777
Q ss_pred HHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccccccc---
Q 007677 264 LSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS--- 340 (593)
Q Consensus 264 v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~--- 340 (593)
+++|+++++++ +..|.. |+||||+|++.|+.+++++|+++|.+ ++.+|..|+||||+|+..|+.++++.|-
T Consensus 261 v~~Ll~~~~~~-~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 334 (437)
T 1n11_A 261 VALLLSKQANG-NLGNKS-GLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334 (437)
T ss_dssp HHHHHTTTCCT-TCCCTT-CCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT
T ss_pred HHHHHhcCCCC-CCCCCC-CCCHHHHHHHcCCHHHHHHHHhCCcc----CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcC
Confidence 77776666666 566666 66777777777777777777666665 5666677777777777766666555431
Q ss_pred ----------CchHhhHHHHHHHHHhhhhc-CcccccccCCCCCcchhhhhH
Q 007677 341 ----------GSALQMQRELLWFKAVKDVV-PPKLRDAKNNKGLTPKALFSK 381 (593)
Q Consensus 341 ----------~~~l~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~~a~~ 381 (593)
.++++.+......+.++.++ .+++++.+|.+|+||+++|.+
T Consensus 335 ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~ 386 (437)
T 1n11_A 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386 (437)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence 12233333323333344333 456666666666666666654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.3e-49 Score=416.29 Aligned_cols=332 Identities=20% Similarity=0.168 Sum_probs=291.3
Q ss_pred CccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677 24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA 103 (593)
Q Consensus 24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 103 (593)
+..+..|+||||.||..|+.++|++|+++ +.+++.+ +..|.||||+|+..|+.++|++|+++ +++++.+|..|.||
T Consensus 8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~ 83 (437)
T 1n11_A 8 GGGGESGLTPLHVASFMGHLPIVKNLLQR-GASPNVS-NVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTP 83 (437)
T ss_dssp -------CCHHHHHHHHTCHHHHHHHHHT-TCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCH
T ss_pred cccCCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCH
Confidence 36688999999999999999999999997 7888877 88999999999999999999999999 89999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHH
Q 007677 104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVA 182 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v 182 (593)
||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.+. ....+..|.||||.|+..|+.+++
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 162 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999999996 8899999999999999999999999999988 677888999999999999999999
Q ss_pred HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHH
Q 007677 183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ 262 (593)
Q Consensus 183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~ 262 (593)
+.|+++ +...+..+.+|.||||+|+..++ .+++++|++.+.+++..+ ..|.||||+|+..|+.+
T Consensus 163 ~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~ 226 (437)
T 1n11_A 163 ELLLER-DAHPNAAGKNGLTPLHVAVHHNN----------LDIVKLLLPRGGSPHSPA-----WNGYTPLHIAAKQNQVE 226 (437)
T ss_dssp HHHHHT-TCCTTCCCSSCCCHHHHHHHTTC----------HHHHHHHGGGTCCSCCCC-----TTCCCHHHHHHHTTCHH
T ss_pred HHHHhC-CCCCCCCCCCCCCHHHHHHHcCC----------HHHHHHHHhCCCCCCCcC-----CCCCCHHHHHHHcCCHH
Confidence 999998 66678889999999999999999 899999999988776544 67899999999999999
Q ss_pred HHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccccccc--
Q 007677 263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS-- 340 (593)
Q Consensus 263 ~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~-- 340 (593)
++++|+++++++ +..|.. |+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|++.++.++++.|.
T Consensus 227 ~~~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 300 (437)
T 1n11_A 227 VARSLLQYGGSA-NAESVQ-GVTPLHLAAQEGHAEMVALLLSKQAN----GNLGNKSGLTPLHLVAQEGHVPVADVLIKH 300 (437)
T ss_dssp HHHHHHHTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-CCCCCC-CCCHHHHHHHCCCHHHHHHHHhcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 999999999998 788888 99999999999999999999999988 7889999999999999999987766541
Q ss_pred -----------CchHhhHHHHHHHHHhhhhc-CcccccccCCCCCcchhhhhHH
Q 007677 341 -----------GSALQMQRELLWFKAVKDVV-PPKLRDAKNNKGLTPKALFSKE 382 (593)
Q Consensus 341 -----------~~~l~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~~a~~~ 382 (593)
.+++..+......+.++.++ .+++++.+|..|.||+|+|.+.
T Consensus 301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence 23444444444445555555 5677788888888888887653
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.2e-43 Score=360.56 Aligned_cols=291 Identities=19% Similarity=0.238 Sum_probs=258.8
Q ss_pred CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677 23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT 102 (593)
Q Consensus 23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 102 (593)
..+.+.+|.|+||.|+++|+.++|+.|++. |++++.+.+..|.||||+|+..|+.++|++|+++ |++++.++..+.+
T Consensus 18 ~~~~~~~~~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~ 94 (337)
T 4g8k_A 18 GRRAAVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGAT 94 (337)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCC
T ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCc
Confidence 345677899999999999999999999997 8999987455699999999999999999999999 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccc----------CCcchhHHHH
Q 007677 103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSL----------KDDDCIELLV 171 (593)
Q Consensus 103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~----------~~~~g~t~L~ 171 (593)
|++.++..++.+++..+++.++++ +.+|..|.||||+|+..|+.+++++|+++++ .+. .+..|.||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 95 PFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred hhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence 999999999999999999999997 8899999999999999999999999999987 332 3566899999
Q ss_pred HHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhH
Q 007677 172 QLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPREL 251 (593)
Q Consensus 172 ~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tp 251 (593)
.|+..|+.++++.|+++.+.+++.+|..|.|++|.++..+. ......+++.|++.|++++..+ ..|.||
T Consensus 174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~------~~~~~~i~~lLl~~gad~n~~d-----~~g~t~ 242 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD------DSDVEAITHLLLDHGADVNVRG-----ERGKTP 242 (337)
T ss_dssp HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSC------TTTHHHHHHHHHHTTCCTTCCC-----GGGCCH
T ss_pred HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcC------cccHHHHHHHHHHCCCCCCCcC-----CCCCCH
Confidence 99999999999999998888999999999999998887654 1223568899999999887654 789999
Q ss_pred HHHHHHcCcHHHHHHHHHH-CCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhh
Q 007677 252 IHDAADRGNVQFLSILIRE-YPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGEL 330 (593)
Q Consensus 252 Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~ 330 (593)
||+|+..|+.++++.|++. +.++ +.+|.. |+||||+|+++|+.+++++|+++|++ +|. .||||+|++.
T Consensus 243 L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~-G~TpL~~A~~~g~~~iv~~Ll~~GAd----~n~-----~~~L~~A~~~ 311 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLEQEHIEI-NDTDSD-GKTALLLAVELKLKKIAELLCKRGAS----TDC-----GDLVMTARRN 311 (337)
T ss_dssp HHHHHHTTCHHHHHHHHTSTTCCT-TCBCTT-SCBHHHHHHHTTCHHHHHHHHTTSCS----STT-----CCHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHhcCCcc-cCcCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC----CCC-----CCHHHHHHHc
Confidence 9999999999999999986 5676 899999 99999999999999999999999988 443 4699999999
Q ss_pred CCCcccccc
Q 007677 331 APQHRLNVV 339 (593)
Q Consensus 331 ~~~~~~~~l 339 (593)
++.+++++|
T Consensus 312 ~~~~iv~~L 320 (337)
T 4g8k_A 312 YDHSLVKVL 320 (337)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 997766554
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.6e-43 Score=362.85 Aligned_cols=305 Identities=18% Similarity=0.154 Sum_probs=222.2
Q ss_pred cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH
Q 007677 26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF 105 (593)
Q Consensus 26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 105 (593)
.+..+.++||.||..|+.+.++.++.+.+.+++.+ |..|.||||+|+..|+.++|++|+++ +++++.+|..|.||||
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHH
Confidence 46778899999999999999999999888888887 89999999999999999999999999 8999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHH
Q 007677 106 YAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQ 184 (593)
Q Consensus 106 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 184 (593)
+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++++ .+..+..|.++++.++..+..+.+..
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~ 175 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY 175 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHh
Confidence 999999999999999999997 7889999999999999999999999999998 78888899999888766555444443
Q ss_pred HHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHc---CcH
Q 007677 185 LLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADR---GNV 261 (593)
Q Consensus 185 Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~---g~~ 261 (593)
.... .++..++..+. .+.+..++........ .+..|.||||.|+.. ++.
T Consensus 176 ~~~~-------------~~~~~~~~~~~----------~~~~~~~l~~~~~~~~-----~~~~~~t~L~~A~~~~~~~~~ 227 (351)
T 3utm_A 176 EFKG-------------HSLLQAAREAD----------LAKVKKTLALEIINFK-----QPQSHETALHCAVASLHPKRK 227 (351)
T ss_dssp HHHH-------------HHHHHHHHTTC----------HHHHHHHTTTCCTTCC-----CTTTCCCHHHHHHHCCSTTHH
T ss_pred hhcc-------------cHHHHHHHhcc----------HHHHHHHHHhhccccc-----CCCCCCCHHHHHHHHhCccHH
Confidence 3321 23344444444 3333333322211111 124456666666666 445
Q ss_pred HHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccccC
Q 007677 262 QFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVSG 341 (593)
Q Consensus 262 ~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~~ 341 (593)
+++++|+++++++ +.+|.. |+||||+|+.+|+.+++++|+++|++ +|.+|..|+||||+|++.++.++++.|
T Consensus 228 ~~~~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~----~n~~d~~g~t~L~~A~~~~~~~~v~~L-- 299 (351)
T 3utm_A 228 QVAELLLRKGANV-NEKNKD-FMTPLHVAAERAHNDVMEVLHKHGAK----MNALDSLGQTALHRAALAGHLQTCRLL-- 299 (351)
T ss_dssp HHHHHHHHTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHH--
T ss_pred HHHHHHHHcCCCc-CCcCCC-CCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHH--
Confidence 6666666666665 556666 66666666666666666666666665 556666666666666666665443332
Q ss_pred chHhhHHHHHHHHHhhhhcCcccccccCCCCCcchhhhhHHHHHHH
Q 007677 342 SALQMQRELLWFKAVKDVVPPKLRDAKNNKGLTPKALFSKEHEELK 387 (593)
Q Consensus 342 ~~l~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~~~~ 387 (593)
+-.+++++.+|.+|+||++++.+...+++
T Consensus 300 -----------------l~~gad~~~~~~~g~tal~~a~~~~~~~l 328 (351)
T 3utm_A 300 -----------------LSYGSDPSIISLQGFTAAQMGNEAVQQIL 328 (351)
T ss_dssp -----------------HHTTCCTTCCCTTSCCHHHHSCHHHHHHH
T ss_pred -----------------HHcCCCCCCcCCCCCChhhhhhHHHHHHH
Confidence 11455666666666666666655444433
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2e-42 Score=343.68 Aligned_cols=270 Identities=20% Similarity=0.268 Sum_probs=247.2
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY 106 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 106 (593)
+.+|.||||.|+..|+.+.+++|+++ +.+++...+..|.||||+|+..|+.+++++|+++ +++++.+|..|.||||+
T Consensus 2 ~~~g~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 2 AVEDNHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence 34688999999999999999999997 6778776678899999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccC----------CcchhHHHHHHHH
Q 007677 107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLK----------DDDCIELLVQLIE 175 (593)
Q Consensus 107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~----------~~~g~t~L~~A~~ 175 (593)
|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++++. .+.. +..|.||||.|+.
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 99999999999999999997 7889999999999999999999999999988 4444 7789999999999
Q ss_pred cCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHH
Q 007677 176 TGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDA 255 (593)
Q Consensus 176 ~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~A 255 (593)
.|+.++++.|++..+..++.+|..|.||||+|+..++ .....++++.|++.|++++..+ ..|.||||+|
T Consensus 158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~i~~~Ll~~g~~~~~~~-----~~g~t~L~~A 226 (285)
T 1wdy_A 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD------DSDVEAITHLLLDHGADVNVRG-----ERGKTPLILA 226 (285)
T ss_dssp HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC------TTTHHHHHHHHHHTTCCSSCCC-----TTSCCHHHHH
T ss_pred cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc------cchHHHHHHHHHHcCCCCCCcC-----CCCCcHHHHH
Confidence 9999999999998788889999999999999999876 2234689999999998887654 7899999999
Q ss_pred HHcCcHHHHHHHHH-HCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCcccccccccc
Q 007677 256 ADRGNVQFLSILIR-EYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTD 317 (593)
Q Consensus 256 a~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D 317 (593)
++.|+.+++++|++ .+.++ +.+|.. |+||||+|+++|+.+++++|+++|++ ++.+|
T Consensus 227 ~~~~~~~~v~~Ll~~~g~~~-~~~~~~-g~t~l~~A~~~~~~~i~~~Ll~~Ga~----~~~~d 283 (285)
T 1wdy_A 227 VEKKHLGLVQRLLEQEHIEI-NDTDSD-GKTALLLAVELKLKKIAELLCKRGAS----TDCGD 283 (285)
T ss_dssp HHTTCHHHHHHHHHSSSCCT-TCCCTT-SCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSS
T ss_pred HHcCCHHHHHHHHhccCCCc-cccCCC-CCcHHHHHHHcCcHHHHHHHHHcCCC----CCccc
Confidence 99999999999999 77887 889999 99999999999999999999999998 66666
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.2e-40 Score=328.98 Aligned_cols=251 Identities=18% Similarity=0.184 Sum_probs=230.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhch-hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ-NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA 142 (593)
Q Consensus 64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 142 (593)
+|+||||.|++.|+.++|++|++. +.+++.+ +..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 578999999999999999999999 7888887 888999999999999999999999999996 788999999999999
Q ss_pred HcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhcc----------ccCCccHHHHHHhcC
Q 007677 143 SLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKR----------AKNKETALHVLARKN 211 (593)
Q Consensus 143 ~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------d~~g~t~Lh~a~~~~ 211 (593)
..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++.. ...+.+ +..|.||||+|+..+
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence 9999999999999998 7888999999999999999999999999984 333433 788999999999999
Q ss_pred CCcccccchhHHHHHHHHHHH-HHhcChHHHHHHhhcchhHHHHHHHcCc----HHHHHHHHHHCCCccccccCCCCchH
Q 007677 212 LGDKDRKNKEAETLVESLWEE-VILLSKQEIWELIEQPRELIHDAADRGN----VQFLSILIREYPDLMWKADKKDNYTI 286 (593)
Q Consensus 212 ~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~~g~t~ 286 (593)
+ .++++.|++. +.+++..+ ..|.||||.|+..|+ .+++++|+++++++ +.+|.. |+||
T Consensus 160 ~----------~~~v~~Ll~~~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~-g~t~ 222 (285)
T 1wdy_A 160 H----------VEVLKILLDEMGADVNACD-----NMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGER-GKTP 222 (285)
T ss_dssp C----------HHHHHHHHHTSCCCTTCCC-----TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTT-SCCH
T ss_pred C----------HHHHHHHHHhcCCCCCccC-----CCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCC-CCcH
Confidence 9 8999999987 77776554 788999999999999 99999999999998 789999 9999
Q ss_pred HHHHHHcCchhHHHHHhc-ccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677 287 FHIAVKNRLEDLFKFIYD-IKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV 339 (593)
Q Consensus 287 Lh~Av~~~~~~iv~~Ll~-~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l 339 (593)
||+|+++|+.+++++|++ .|.+ ++.+|..|+||||+|++.++.++++.|
T Consensus 223 L~~A~~~~~~~~v~~Ll~~~g~~----~~~~~~~g~t~l~~A~~~~~~~i~~~L 272 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELL 272 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhccCCC----ccccCCCCCcHHHHHHHcCcHHHHHHH
Confidence 999999999999999999 7887 889999999999999999987665544
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.9e-40 Score=326.28 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=157.7
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCcc----------ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhch
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEG----------EIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ 96 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~----------~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~ 96 (593)
...|.|+||.|+..|+.+.+..++...+. .++.+ |..|.||||+|+..|+.++|++|++. +++++.+
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~ 88 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNII 88 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEE
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCc
Confidence 56789999999999998888876654322 23333 88999999999999999999999998 8999999
Q ss_pred hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHc
Q 007677 97 NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIET 176 (593)
Q Consensus 97 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~ 176 (593)
|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++....+..|.||||.|+..
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR 167 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHc
Confidence 999999999999999999999999999997 8899999999999999999999999999987222334467777777777
Q ss_pred CCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHH
Q 007677 177 GLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAA 256 (593)
Q Consensus 177 ~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa 256 (593)
|+.++++.|++. +..++.+|.+|.||||+|+..++ .++++.|++.|++++. +..|.||||+|+
T Consensus 168 g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~~----------~~~v~~Ll~~ga~~~~------~~~g~t~L~~A~ 230 (285)
T 3d9h_A 168 GHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQQ----------RACVKKLLESGADVNQ------GKGQDSPLHAVV 230 (285)
T ss_dssp TCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTTC----------HHHHHHHHHTTCCTTC------CBTTBCHHHHHH
T ss_pred CCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCc----------HHHHHHHHHCCCCCCC------CCCCCCHHHHHH
Confidence 777777777765 34445555555555555555554 4445555444444431 234445555555
Q ss_pred HcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677 257 DRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDI 305 (593)
Q Consensus 257 ~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~ 305 (593)
..|+.+++++|+++|+++ +.+|.. |+||||+|+ ++.+++++|+++
T Consensus 231 ~~~~~~~v~~Ll~~gad~-~~~d~~-g~t~l~~A~--~~~~~~~~Ll~~ 275 (285)
T 3d9h_A 231 RTASEELACLLMDFGADT-QAKNAE-GKRPVELVP--PESPLAQLFLER 275 (285)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTT-SCCGGGGSC--TTSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CCcCCC-CCCHHHHhc--CccHHHHHHHHh
Confidence 555555555555544444 444444 555555544 233444444444
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=319.96 Aligned_cols=247 Identities=17% Similarity=0.150 Sum_probs=193.8
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV 108 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 108 (593)
+|+||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.++|++|+++ +++++.+|..|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNII-TADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH
Confidence 577888888888888888888875 6677766 77788888888888888888888887 7778888888888888888
Q ss_pred HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677 109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
..|+.+++++|+++|+++ + .+.+|.||||+|+..|+.+++++|+++++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------------------------ 125 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGG------------------------------ 125 (261)
T ss_dssp HHTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTC------------------------------
T ss_pred HcCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCC------------------------------
Confidence 888888888888888775 2 34457788888888888888887777654
Q ss_pred cchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHH
Q 007677 189 HRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILI 268 (593)
Q Consensus 189 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll 268 (593)
.++.+|.+|.||||+|+..++ .++++.|++.|++++. +..|.||||+|+..|+.+++++|+
T Consensus 126 ---~~~~~~~~g~t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~------~~~g~t~Lh~A~~~~~~~~v~~Ll 186 (261)
T 2xai_A 126 ---NIDHKISHLGTPLYLACENQQ----------RACVKKLLESGADVNQ------GKGQDSPLHAVARTASEELACLLM 186 (261)
T ss_dssp ---CTTCCBTTTBCHHHHHHHTTC----------HHHHHHHHHHTCCTTC------CBTTBCHHHHHHHHTCHHHHHHHH
T ss_pred ---CCCcCCCCCCCHHHHHHHhCC----------HHHHHHHHHcCCCCCC------CCCCCChHHHHHHcCCHHHHHHHH
Confidence 334566677777777777777 7777777777776663 367899999999999999999999
Q ss_pred HHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccc----cccccccCCCCchhHhhhhhCCCc
Q 007677 269 REYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIAD----LMVDCTDEKGNNILHLAGELAPQH 334 (593)
Q Consensus 269 ~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~----~lin~~D~~G~T~LH~A~~~~~~~ 334 (593)
++|+++ +.+|.. |+||||+|+.++ +++++|++.+.... ..++.+|..|+||+|+|.+...++
T Consensus 187 ~~gad~-~~~d~~-g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 187 DFGADT-QAKNAE-GKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252 (261)
T ss_dssp HTTCCT-TCCCTT-SCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCH
T ss_pred HcCCCC-CCcCCC-CCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcH
Confidence 999998 899999 999999999654 58999999876432 125678999999999999877654
No 9
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=6.4e-39 Score=328.57 Aligned_cols=272 Identities=16% Similarity=0.132 Sum_probs=245.6
Q ss_pred CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677 23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT 102 (593)
Q Consensus 23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 102 (593)
.+.+|..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.++|++|+++ +++++.+|..|.|
T Consensus 51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t 126 (351)
T 3utm_A 51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQH-GADVHAK-DKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFT 126 (351)
T ss_dssp CCCSSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCC
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCC
Confidence 346789999999999999999999999987 8889887 89999999999999999999999999 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHH
Q 007677 103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVA 182 (593)
Q Consensus 103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v 182 (593)
|||+|+..|+.+++++|+++|++. ...+..|.||+++|+..+..+.+++... ..++..++..+..+.+
T Consensus 127 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 194 (351)
T 3utm_A 127 PLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFK-----------GHSLLQAAREADLAKV 194 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHH-----------HHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhc-----------ccHHHHHHHhccHHHH
Confidence 999999999999999999999996 8899999999999999888888887664 3467788889999999
Q ss_pred HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHH
Q 007677 183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ 262 (593)
Q Consensus 183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~ 262 (593)
..++.... .....+..|.||||+|+..++ ....++++.|++.|++++..+ ..|.||||+|++.|+.+
T Consensus 195 ~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~-------~~~~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~g~~~ 261 (351)
T 3utm_A 195 KKTLALEI-INFKQPQSHETALHCAVASLH-------PKRKQVAELLLRKGANVNEKN-----KDFMTPLHVAAERAHND 261 (351)
T ss_dssp HHHTTTCC-TTCCCTTTCCCHHHHHHHCCS-------TTHHHHHHHHHHTTCCTTCCC-----TTCCCHHHHHHHTTCHH
T ss_pred HHHHHhhc-ccccCCCCCCCHHHHHHHHhC-------ccHHHHHHHHHHcCCCcCCcC-----CCCCCHHHHHHHcCCHH
Confidence 99988743 334577889999999999854 233789999999998887654 78999999999999999
Q ss_pred HHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhh
Q 007677 263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGE 329 (593)
Q Consensus 263 ~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~ 329 (593)
++++|+++|+++ +.+|.. |+||||+|+.+|+.+++++|+++|++ ++.+|..|+||+|+|..
T Consensus 262 ~v~~Ll~~ga~~-n~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~gad----~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 262 VMEVLHKHGAKM-NALDSL-GQTALHRAALAGHLQTCRLLLSYGSD----PSIISLQGFTAAQMGNE 322 (351)
T ss_dssp HHHHHHHTTCCT-TCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHSCH
T ss_pred HHHHHHHCCCCC-CCcCCC-CCCHHHHHHHcCcHHHHHHHHHcCCC----CCCcCCCCCChhhhhhH
Confidence 999999999999 889999 99999999999999999999999998 78999999999999943
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.3e-40 Score=340.06 Aligned_cols=259 Identities=19% Similarity=0.173 Sum_probs=208.7
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHH--------HcCCchhhhch
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLL--------KRMSAEDLAKQ 96 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll--------~~~~~~~~~~~ 96 (593)
.+|..|.||||.|+..|+ ++++.|+. .+++.+.+..|.||||+|+..|+.++|++|+ +. +++++.+
T Consensus 89 ~~~~~g~t~L~~Aa~~~~-~~~~~L~~---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~ 162 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGSY-AITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAM 162 (373)
T ss_dssp -----CCCHHHHHHHSSS-CCCSCCST---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCC
T ss_pred CCCCCCccHHHHHhcCCc-hHHHHhcc---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCC
Confidence 568889999999999654 67776654 3566663378999999999999999888887 55 8899999
Q ss_pred hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc---c-cccCCcchhHHHHH
Q 007677 97 NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET---K-NSLKDDDCIELLVQ 172 (593)
Q Consensus 97 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~---~-~~~~~~~g~t~L~~ 172 (593)
|..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++ . .+..+..|.||||.
T Consensus 163 d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~ 241 (373)
T 2fo1_E 163 DCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241 (373)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHH
Confidence 999999999999999999999999999997 789999999999999999999999999987 3 67789999999999
Q ss_pred HHHcC---CHHHHHHHHHhcchhhhc--------cccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHH-HhcChHH
Q 007677 173 LIETG---LYAVALQLLHDHRYLATK--------RAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEV-ILLSKQE 240 (593)
Q Consensus 173 A~~~~---~~~~v~~Ll~~~~~~~~~--------~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~ 240 (593)
|+..+ +.++++.|++.+ ..++. +|..|.||||+|+..++ .+++++|++.+ .+++..+
T Consensus 242 A~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~----------~~~v~~Ll~~~~~~~n~~d 310 (373)
T 2fo1_E 242 VAHNEGRDQVASAKLLVEKG-AKVDYDGAARKDSEKYKGRTALHYAAQVSN----------MPIVKYLVGEKGSNKDKQD 310 (373)
T ss_dssp HHHSCSTTHHHHHHHHHHHT-CCSSCCSGGGTSSSSCCCCCTHHHHHSSCC----------HHHHHHHHHHSCCCTTCCC
T ss_pred HHHhCCcchHHHHHHHHHCC-CCcccccccccCcccccCCCHHHHHHHhCC----------HHHHHHHHHhcCCCccCcC
Confidence 99998 899999999984 33332 45677888888887777 77777777765 5655443
Q ss_pred HHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677 241 IWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI 308 (593)
Q Consensus 241 ~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~ 308 (593)
..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+.+|+.+++++|++++++
T Consensus 311 -----~~g~TpL~~A~~~g~~~iv~~Ll~~gad~-~~~d~~-g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 311 -----EDGKTPIMLAAQEGRIEVVMYLIQQGASV-EAVDAT-DHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp -----TTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCSS-SCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred -----CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cCCCCC-CCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 67778888888888888888888877777 677777 78888888888888888888777664
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-40 Score=342.50 Aligned_cols=260 Identities=15% Similarity=0.168 Sum_probs=225.9
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHHHHHHHcCCHHHHHHHH--------hcCCCCCccCC
Q 007677 61 ITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAVFYAVASESVELVKATM--------KGNEGIATLPD 131 (593)
Q Consensus 61 ~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~ 131 (593)
.+..|.||||+|+..|+ +++++|++ .+++.+| ..|+||||+|+..|+.++++.|+ +.|+++ +.+|
T Consensus 90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d 163 (373)
T 2fo1_E 90 PEPESPIKLHTEAAGSY-AITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMD 163 (373)
T ss_dssp ----CCCHHHHHHHSSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCC
T ss_pred CCCCCccHHHHHhcCCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Confidence 37889999999999665 78877753 4688888 79999999999999998887776 789997 8899
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcc--hhhhccccCCccHHHHHH
Q 007677 132 NDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHR--YLATKRAKNKETALHVLA 208 (593)
Q Consensus 132 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~a~ 208 (593)
..|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++... ..++..|.+|.||||+|+
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence 999999999999999999999999998 88889999999999999999999999999743 577788999999999999
Q ss_pred hcCCCcccccchhHHHHHHHHHHHHHhcChHHH---HHHhhcchhHHHHHHHcCcHHHHHHHHHHC-CCccccccCCCCc
Q 007677 209 RKNLGDKDRKNKEAETLVESLWEEVILLSKQEI---WELIEQPRELIHDAADRGNVQFLSILIREY-PDLMWKADKKDNY 284 (593)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~---~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~~g~ 284 (593)
..+. ....++++.|++.|++++.... ...+..|.||||+|+..|+.+++++|++++ .++ +.+|.. |+
T Consensus 244 ~~~~-------~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~-g~ 314 (373)
T 2fo1_E 244 HNEG-------RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDED-GK 314 (373)
T ss_dssp HSCS-------TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTT-CC
T ss_pred HhCC-------cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCC-CC
Confidence 9872 1128999999999988774211 113468899999999999999999999997 666 899999 99
Q ss_pred hHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677 285 TIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV 339 (593)
Q Consensus 285 t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l 339 (593)
||||+|+.+|+.+++++|+++|++ ++.+|..|+||||+|+..|+.++++.|
T Consensus 315 TpL~~A~~~g~~~iv~~Ll~~gad----~~~~d~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 315 TPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC----ccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999998 889999999999999999998776654
No 12
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=5.2e-39 Score=319.01 Aligned_cols=248 Identities=18% Similarity=0.103 Sum_probs=152.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchh---hhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAED---LAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPI 138 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 138 (593)
|.+|+||||+|+..|+.++|++|++. +.+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL 82 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL 82 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhc--CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence 45555555555555555555555554 333 4555555555555555555555555555555553 44555555555
Q ss_pred HHHHHcCCHHHHHHHHHhccc--------------ccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHH
Q 007677 139 VRAASLGRTEVVEFLYRETKN--------------SLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETAL 204 (593)
Q Consensus 139 ~~A~~~g~~~iv~~Ll~~~~~--------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~L 204 (593)
|+|+..|+.+++++|+++++. ......+.++++.+...+........+...+..++.+|..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 555555555555555554430 112234556666666666555555555556777888999999999
Q ss_pred HHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCc
Q 007677 205 HVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNY 284 (593)
Q Consensus 205 h~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~ 284 (593)
|+|+..++ .++++.|++.|++++..+. ..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+
T Consensus 163 ~~A~~~g~----------~~~v~~Ll~~g~~~~~~~~----~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-~~~d~~-g~ 226 (282)
T 1oy3_D 163 HVAVIHKD----------AEMVRLLRDAGADLNKPEP----TCGRTPLHLAVEAQAASVLELLLKAGADP-TARMYG-GR 226 (282)
T ss_dssp HHHHHTTC----------HHHHHHHHHHTCCTTCCCT----TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-SC
T ss_pred HHHHHcCC----------HHHHHHHHHcCCCCCCCCC----CCCcCHHHHHHHcCCHHHHHHHHHcCCCC-cccccC-CC
Confidence 99999999 9999999999998876541 34899999999999999999999999998 889999 99
Q ss_pred hHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCC
Q 007677 285 TIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAP 332 (593)
Q Consensus 285 t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~ 332 (593)
||||+|+.+|+.+++++|+++|++ ++.+|..|.|||++|.....
T Consensus 227 tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 227 TPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CHHHHHHTSSCHHHHHHHHHTTCC----CCCCC---------------
T ss_pred CHHHHHHHcCCcHHHHHHHHcCCC----cCcCCCcccccccccCCccc
Confidence 999999999999999999999999 88999999999999987654
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=317.52 Aligned_cols=244 Identities=13% Similarity=0.085 Sum_probs=197.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCC---------chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMS---------AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDN 132 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~---------~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 132 (593)
...|.|+||+|+..|+.+.+..++.... ...++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC
Confidence 4679999999999999877777655420 1236778999999999999999999999999999996 88999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcC
Q 007677 133 DGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKN 211 (593)
Q Consensus 133 ~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~ 211 (593)
+|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++.. ...+ .+.+|.||||+|+..+
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~-~~~~g~t~L~~A~~~g 168 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG-ASVQ-PESDLASPIHEAARRG 168 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSS-CSCTTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC-CCCC-CCCCCCCHHHHHHHcC
Confidence 99999999999999999999999998 7888999999999999999999999999984 3333 3456999999999999
Q ss_pred CCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHH
Q 007677 212 LGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAV 291 (593)
Q Consensus 212 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av 291 (593)
+ .++++.|++.|.+++..+ ..|.||||+|+..|+.+++++|+++++++ + .|.. |+||||+|+
T Consensus 169 ~----------~~~v~~Ll~~g~~~~~~d-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~-g~t~L~~A~ 230 (285)
T 3d9h_A 169 H----------VECVNSLIAYGGNIDHKI-----SHLGTPLYLACENQQRACVKKLLESGADV-N-QGKG-QDSPLHAVV 230 (285)
T ss_dssp C----------HHHHHHHHHTTCCTTCCB-----TTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBT-TBCHHHHHH
T ss_pred C----------HHHHHHHHHCCCCCCCcC-----CCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCC-CCCHHHHHH
Confidence 9 999999999998877654 78899999999999999999999999998 4 4888 999999999
Q ss_pred HcCchhHHHHHhcccCccccccccccCCCCchhHhhhhh
Q 007677 292 KNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGEL 330 (593)
Q Consensus 292 ~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~ 330 (593)
..|+.+++++|++.|++ ++.+|.+|+||||+|+..
T Consensus 231 ~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 231 RTASEELACLLMDFGAD----TQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp HTTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGSCTT
T ss_pred HcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHhcCc
Confidence 99999999999999998 889999999999999943
No 14
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.8e-37 Score=316.58 Aligned_cols=273 Identities=17% Similarity=0.151 Sum_probs=234.4
Q ss_pred HHHHHhhhhccccCCCccc-cccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677 9 KQLKEDKRKESDEQLPAET-ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR 87 (593)
Q Consensus 9 ~~l~~~~~~~~~~~~~~~~-~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~ 87 (593)
+..+.+...+.+.+ .++ ..|+||||.|+..|+.++|+.|++. +++++.+ +..+.+|+|.++..++.+++..+++.
T Consensus 39 ~~V~~LL~~Gadvn--~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (337)
T 4g8k_A 39 DLVQQLLEGGANVN--FQEEEGGWTPLHNAVQMSREDIVELLLRH-GADPVLR-KKNGATPFILAAIAGSVKLLKLFLSK 114 (337)
T ss_dssp HHHHHHHHHTCCTT--CCCTTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHCCCCCC--ccCCCCCcCHHHHHHHcCCHHHHHHHHHc-CCchhhh-ccCCCchhHHHHhcccchhhHHhhhc
Confidence 34455555554443 444 4599999999999999999999986 8888887 89999999999999999999999998
Q ss_pred CCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCC---------ccCCCCCCCHHHHHHHcCCHHHHHHHHHh-c
Q 007677 88 MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA---------TLPDNDGMLPIVRAASLGRTEVVEFLYRE-T 157 (593)
Q Consensus 88 ~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~ 157 (593)
+.+++.+|..|.||||+|+..|+.+++++|+++|+++. ...+..|.||||+|+..|+.+++++|+++ +
T Consensus 115 --~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~g 192 (337)
T 4g8k_A 115 --GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192 (337)
T ss_dssp --TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSC
T ss_pred --cchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccC
Confidence 89999999999999999999999999999999998762 23456799999999999999999999975 5
Q ss_pred c-cccCCcchhHHHHHHHHcCC---H-HHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHH
Q 007677 158 K-NSLKDDDCIELLVQLIETGL---Y-AVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEE 232 (593)
Q Consensus 158 ~-~~~~~~~g~t~L~~A~~~~~---~-~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~ 232 (593)
+ .+..+..|.++++.++..+. . .+++.|++. +.+++.+|.+|+||||+|+..++ .+.++.|++.
T Consensus 193 ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~-gad~n~~d~~g~t~L~~a~~~~~----------~~~v~~Ll~~ 261 (337)
T 4g8k_A 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKH----------LGLVQRLLEQ 261 (337)
T ss_dssp CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT-TCCTTCCCGGGCCHHHHHHHTTC----------HHHHHHHHTS
T ss_pred CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhhh----------hHHHHHHHHh
Confidence 5 78889999999998876544 2 455666665 78889999999999999999999 8899988874
Q ss_pred -HHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccc
Q 007677 233 -VILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIAD 310 (593)
Q Consensus 233 -~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~ 310 (593)
+++++..+ .+|.||||+|++.|+.++|++|+++|+++ + +.+|||+|+++|+.+++++|+++|++.+
T Consensus 262 ~~~~vn~~d-----~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~------n-~~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 262 EHIEINDTD-----SDGKTALLLAVELKLKKIAELLCKRGAST------D-CGDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp TTCCTTCBC-----TTSCBHHHHHHHTTCHHHHHHHHTTSCSS------T-TCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred cCCcccCcC-----CCCCCHHHHHHHcCCHHHHHHHHHCCCCC------C-CCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 66666544 88999999999999999999999999887 2 6789999999999999999999999854
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.1e-39 Score=333.39 Aligned_cols=256 Identities=18% Similarity=0.082 Sum_probs=161.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
|.+|.||||+|+..|+.++|++|+++ +++++.+|..|.||||+|+..|+.++|++|+++|++. .+.+|.||||+|
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A 91 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLA 91 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHH
Confidence 34444455555554555555544444 4444444444455555555555555555554444432 122444455555
Q ss_pred HHcCCHHHHHHHHHh----cc-ccc-----------------CCcchhHHHHHHHHcC--CHHHHHHHHHhcchhhhccc
Q 007677 142 ASLGRTEVVEFLYRE----TK-NSL-----------------KDDDCIELLVQLIETG--LYAVALQLLHDHRYLATKRA 197 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~----~~-~~~-----------------~~~~g~t~L~~A~~~~--~~~~v~~Ll~~~~~~~~~~d 197 (593)
+..|+.+++++|++. +. .+. .+..|.||||.|+..| +.++++.|++. +.+++.+|
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d 170 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKD 170 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCC
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccC
Confidence 555555555554444 21 111 3444555555555555 55555555555 44556667
Q ss_pred cCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCcccc
Q 007677 198 KNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWK 277 (593)
Q Consensus 198 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~ 277 (593)
..|.||||+|+..++ .+++++|++.|++....+.+..|..|.||||+|+..|+.+++++|+++|+++ +.
T Consensus 171 ~~g~t~L~~A~~~g~----------~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~-~~ 239 (364)
T 3ljn_A 171 KADETPLMRAMEFRN----------REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV-NM 239 (364)
T ss_dssp TTSCCHHHHHHHTTC----------HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCT-TC
T ss_pred CCCCCHHHHHHHcCC----------HHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CC
Confidence 777777777777777 7777777777766211111223377899999999999999999999999998 89
Q ss_pred ccCCCCchHHHHHHHcCchhHHHHHhcccCcccc--------ccccccCCCCchhHhhhhhCCCcc
Q 007677 278 ADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADL--------MVDCTDEKGNNILHLAGELAPQHR 335 (593)
Q Consensus 278 ~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~--------lin~~D~~G~T~LH~A~~~~~~~~ 335 (593)
+|.. |+||||+|+..|+.+++++|+++|++... .....|..|+|||+.|+..++.+.
T Consensus 240 ~d~~-g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~ 304 (364)
T 3ljn_A 240 EDNE-HTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQE 304 (364)
T ss_dssp CCTT-SCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHH
T ss_pred CCCC-CCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHH
Confidence 9999 99999999999999999999999876321 012367889999999998886543
No 16
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=309.48 Aligned_cols=204 Identities=15% Similarity=0.067 Sum_probs=176.3
Q ss_pred HHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 007677 9 KQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRM 88 (593)
Q Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~ 88 (593)
+.++.+.+.+.+. +.+|..|+||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++
T Consensus 17 ~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~- 91 (261)
T 2xai_A 17 LSLRNLISQGWAV--NIITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGV-TADWHTPLFNACVSGSWDCVNLLLQH- 91 (261)
T ss_dssp HHHHHHHHTTCCS--SCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT-
T ss_pred HHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC-
Confidence 4455555555443 47899999999999999999999999987 7889887 89999999999999999999999999
Q ss_pred CchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchh
Q 007677 89 SAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCI 167 (593)
Q Consensus 89 ~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~ 167 (593)
+++++. +..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+ .+..|.
T Consensus 92 -g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~ 167 (261)
T 2xai_A 92 -GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQD 167 (261)
T ss_dssp -TCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT-CCBTTB
T ss_pred -CCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCC
Confidence 777774 456999999999999999999999999997 8899999999999999999999999999998 44 478899
Q ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHH
Q 007677 168 ELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVI 234 (593)
Q Consensus 168 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~ 234 (593)
||||.|+..++.++++.|++. +.+++.+|.+|+||||+|+..+ ++++.|++.+.
T Consensus 168 t~Lh~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~tpl~~A~~~~------------~~~~~ll~~~~ 221 (261)
T 2xai_A 168 SPLHAVARTASEELACLLMDF-GADTQAKNAEGKRPVELVPPES------------PLAQLFLEREG 221 (261)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCTTC------------THHHHHHHC-C
T ss_pred ChHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCChhhhccccc------------cHHHHHHhccC
Confidence 999999999999999999988 6777888999999999988654 35666665543
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-38 Score=311.55 Aligned_cols=226 Identities=19% Similarity=0.214 Sum_probs=124.0
Q ss_pred ccccccCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCchhhh-chhcCCChHHHHHHHcCCHHHHHHHHh
Q 007677 56 EIGVEITNHGKTALHVAAEAN-------------RIDFVKKLLKRMSAEDLA-KQNKIGCTAVFYAVASESVELVKATMK 121 (593)
Q Consensus 56 ~~~~~~~~~g~T~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~-~~d~~g~TpLh~A~~~g~~~iv~~Ll~ 121 (593)
+++.+ |.+|.||||+|+..| +.+++++|++. +.+++ ..|..|.||||+|+..|+.+++++|++
T Consensus 2 dvn~~-d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 78 (253)
T 1yyh_A 2 DVNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78 (253)
T ss_dssp -----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCC-CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 45666 788888888888877 77888888877 56654 347778888888888888888888888
Q ss_pred cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCc
Q 007677 122 GNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKE 201 (593)
Q Consensus 122 ~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~ 201 (593)
+|+++ +.+|..|.||||+|+..|+.+++++|++++. ...+.++..|.
T Consensus 79 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--------------------------------~~~~~~~~~g~ 125 (253)
T 1yyh_A 79 ASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRA--------------------------------TDLDARMHDGT 125 (253)
T ss_dssp TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT--------------------------------SCTTCCCTTCC
T ss_pred cCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------------------------------CCccccCCCCC
Confidence 88775 6777788888888888888888888877664 22333444444
Q ss_pred cHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCC
Q 007677 202 TALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKK 281 (593)
Q Consensus 202 t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 281 (593)
||||+|+..++ .++++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++|+++ +.+|..
T Consensus 126 t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~~d-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~ 189 (253)
T 1yyh_A 126 TPLILAARLAV----------EGMLEDLINSHADVNAVD-----DLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR 189 (253)
T ss_dssp CHHHHHHHHTC----------SSHHHHHHHTTCCTTCBC-----TTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred cHHHHHHHcCh----------HHHHHHHHHcCCCCCCcC-----CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence 55555554444 444445554444444332 45566666666666666666666666666 566666
Q ss_pred CCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccccc
Q 007677 282 DNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNV 338 (593)
Q Consensus 282 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~ 338 (593)
|+||||+|+.+|+.+++++|+++|++ ++.+|..|+||||+|++.|+.+++..
T Consensus 190 -g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 190 -EETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp -SCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred -CCCHHHHHHHCCCHHHHHHHHHcCCC----ccccccCCCCHHHHHHHcCCHHHHHH
Confidence 66666666666666666666666666 55666666666666666666555443
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=9.9e-39 Score=329.62 Aligned_cols=261 Identities=16% Similarity=0.098 Sum_probs=233.0
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
..|..|+||||.||..|+.++|++|++. +.+++.+ |..|.||||+|+..|+.++|++|+++ +++++ +..|.|||
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~--~~~g~t~L 88 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASV--GEVHS--LWHGQKPI 88 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHH--CCCCC--CBTTBCHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHC--CCCcc--ccCCCCHH
Confidence 5588999999999999999999999987 7889887 89999999999999999999999999 55443 45799999
Q ss_pred HHHHHcCCHHHHHHHHhc----CCCCCcc-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHHhcc-cc
Q 007677 105 FYAVASESVELVKATMKG----NEGIATL-----------------PDNDGMLPIVRAASLG--RTEVVEFLYRETK-NS 160 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~-~~ 160 (593)
|+|+..|+.+++++|++. |.+. +. ++..|.||||+|+..| +.+++++|+++++ .+
T Consensus 89 ~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~ 167 (364)
T 3ljn_A 89 HLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT 167 (364)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT
T ss_pred HHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc
Confidence 999999999999999998 6654 33 7889999999999999 9999999999998 88
Q ss_pred cCCcchhHHHHHHHHcCCHHHHHHHHHhcch----hhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhc
Q 007677 161 LKDDDCIELLVQLIETGLYAVALQLLHDHRY----LATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILL 236 (593)
Q Consensus 161 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 236 (593)
..+..|.||||+|+..|+.++++.|++.... .++.+|..|.||||+|+..++ .++++.|++.|+++
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~----------~~~v~~Ll~~gad~ 237 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW----------EDVAMRFVEMGIDV 237 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC----------HHHHHHHHTTTCCT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC----------HHHHHHHHHcCCCC
Confidence 8999999999999999999999999998433 178899999999999999999 99999999999988
Q ss_pred ChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCcc-----------ccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677 237 SKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLM-----------WKADKKDNYTIFHIAVKNRLEDLFKFIYDI 305 (593)
Q Consensus 237 ~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~-----------~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~ 305 (593)
+..+ ..|.||||+|+..|+.+++++|++++++.. ...+.. |+||++.|+..++.+.+..|+..
T Consensus 238 ~~~d-----~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~aa~~~~~~~v~~ll~~ 311 (364)
T 3ljn_A 238 NMED-----NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRV-VWLDFVPAAADPSKQEVLQLLQE 311 (364)
T ss_dssp TCCC-----TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGC-CCCTTSCSSCCHHHHHHHHHHHH
T ss_pred CCCC-----CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccc-ccccchhhhhccCHHHHHHHHHH
Confidence 7655 789999999999999999999999986541 125667 99999999999988888888887
Q ss_pred cCc
Q 007677 306 KPI 308 (593)
Q Consensus 306 ~~~ 308 (593)
+.+
T Consensus 312 ~~~ 314 (364)
T 3ljn_A 312 KLD 314 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.1e-38 Score=307.21 Aligned_cols=231 Identities=20% Similarity=0.186 Sum_probs=164.9
Q ss_pred CccccccchHhHHHHHcC-------------CHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCc
Q 007677 24 PAETITRRLKLYRAALNG-------------DWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA 90 (593)
Q Consensus 24 ~~~~~~~~t~Lh~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~ 90 (593)
+.+|.+|+||||.|+..| +.++++.|++. +.+++...|..|.||||+|+..|+.++|++|+++ +
T Consensus 4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g 80 (253)
T 1yyh_A 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--S 80 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT--T
T ss_pred CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc-cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--C
Confidence 367999999999999987 89999999987 6666555589999999999999999999999999 8
Q ss_pred hhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHH
Q 007677 91 EDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELL 170 (593)
Q Consensus 91 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L 170 (593)
++++.+|..|.||||+|+..|+.+++++|+++++...+.++..|.||||+|+..|+.+++++|++.+.
T Consensus 81 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------------ 148 (253)
T 1yyh_A 81 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA------------ 148 (253)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC------------
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC------------
Confidence 99999999999999999999999999999999984458899999999999999999999999998875
Q ss_pred HHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchh
Q 007677 171 VQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRE 250 (593)
Q Consensus 171 ~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t 250 (593)
.++.+|.+|.||||+|+..++ .++++.|++.|++++..+ ..|.|
T Consensus 149 ---------------------~~~~~d~~g~t~L~~A~~~~~----------~~~v~~Ll~~ga~~~~~~-----~~g~t 192 (253)
T 1yyh_A 149 ---------------------DVNAVDDLGKSALHWAAAVNN----------VDAAVVLLKNGANKDMQN-----NREET 192 (253)
T ss_dssp ---------------------CTTCBCTTSCBHHHHHHHHTC----------HHHHHHHHHTTCCTTCCC-----TTSCC
T ss_pred ---------------------CCCCcCCCCCCHHHHHHHcCC----------HHHHHHHHHcCCCCCCcC-----CCCCC
Confidence 223345555566666665555 556666666655555433 66788
Q ss_pred HHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccC
Q 007677 251 LIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKP 307 (593)
Q Consensus 251 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~ 307 (593)
|||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+++|+.+++++|.+...
T Consensus 193 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~-g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 193 PLFLAAREGSYETAKVLLDHFANR-DITDHM-DRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHHHC---
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCc-cccccC-CCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 888888899999999999999998 789999 9999999999999999999987644
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=2.6e-37 Score=298.77 Aligned_cols=216 Identities=20% Similarity=0.208 Sum_probs=151.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
|.+|.||||+|+..|+.+++++|+++ +.+++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLA 84 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHH
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHH
Confidence 56666666666666666666666666 5666666666666666666666666666666666664 55666666666666
Q ss_pred HHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677 142 ASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE 221 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~ 221 (593)
+..|+.+++++|++.++ ...+.+|..|.||||+|+..++
T Consensus 85 ~~~~~~~~~~~Ll~~~~--------------------------------~~~~~~~~~g~t~L~~A~~~~~--------- 123 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSNGQ--------------------------------MDVNCQDDGGWTPMIWATEYKH--------- 123 (237)
T ss_dssp HHTTCHHHHHHHHTTTC--------------------------------CCTTCCCTTSCCHHHHHHHTTC---------
T ss_pred HHcCCHHHHHHHHhCCC--------------------------------CCcccCCCCCCCHHHHHHHcCC---------
Confidence 66666666666666552 1122233334444444444433
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHH
Q 007677 222 AETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKF 301 (593)
Q Consensus 222 ~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~ 301 (593)
.++++.|++.|.+++..+ ..|.||||+|+..|+.+++++|+++++++ +..|.. |+||||+|++.|+.+++++
T Consensus 124 -~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~~~~~~v~~ 195 (237)
T 3b7b_A 124 -VDLVKLLLSKGSDINIRD-----NEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIH-GDSPLHIAARENRYDCVVL 195 (237)
T ss_dssp -HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHCCHHHHHHHHTTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHCCCCCCccC-----CCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCC-CCCHHHHHHHhCCHhHHHH
Confidence 344444444443333222 56678888888888999999999999998 788998 9999999999999999999
Q ss_pred HhcccCccccccccccCCCCchhHhhhhhCCC
Q 007677 302 IYDIKPIADLMVDCTDEKGNNILHLAGELAPQ 333 (593)
Q Consensus 302 Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~ 333 (593)
|+++|++ ++.+|.+|+||||+|+..++.
T Consensus 196 Ll~~gad----~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 196 FLSRDSD----VTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp HHTTTCC----TTCCCTTSCCHHHHSCTTCHH
T ss_pred HHHcCCC----CCccCCCCCCHHHHHHHHHHH
Confidence 9999998 788999999999999998864
No 21
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.7e-37 Score=300.66 Aligned_cols=225 Identities=15% Similarity=0.157 Sum_probs=138.1
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHh---hCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCC
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYD---KYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGC 101 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~---~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 101 (593)
.+|.+|+||||.|+..|+.+++++|++ +.+.+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|..|.
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~ 80 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQ 80 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-cccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCC
Confidence 345556666666666666666665554 234555544 55566666666666666666666665 555555666666
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCC----CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcC
Q 007677 102 TAVFYAVASESVELVKATMKGNE----GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETG 177 (593)
Q Consensus 102 TpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~ 177 (593)
||||+|+..|+.+++++|++.++ ++ +..+..|.||||+|+..|+.+++++|++.+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------------------- 140 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGA------------------- 140 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC-------------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCC-------------------
Confidence 66666666666666666666554 32 4455556666666666666555555555443
Q ss_pred CHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHH
Q 007677 178 LYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAAD 257 (593)
Q Consensus 178 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~ 257 (593)
+++..+ +..|.||||+|+.
T Consensus 141 ---------------------------------------------------------~~~~~~----~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 141 ---------------------------------------------------------DIDAVD----IKSGRSPLIHAVE 159 (241)
T ss_dssp ---------------------------------------------------------CTTCCC----TTTCCCHHHHHHH
T ss_pred ---------------------------------------------------------Cccccc----ccCCCcHHHHHHH
Confidence 222111 0234666666677
Q ss_pred cCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCcccc
Q 007677 258 RGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLN 337 (593)
Q Consensus 258 ~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~ 337 (593)
.|+.+++++|+++|+++ +..|.. |+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.++++
T Consensus 160 ~~~~~~v~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~i~~ 233 (241)
T 1k1a_A 160 NNSLSMVQLLLQHGANV-NAQMYS-GSSALHSASGRGLLPLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDILR 233 (241)
T ss_dssp TTCHHHHHHHHHTTCCT-TCBCTT-SCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred cCCHHHHHHHHHcCCCC-CCcCCC-CCCHHHHHHHcCCHHHHHHHHhcCCC----CCCcCCCCCCHHHHHHhcCcHHHHh
Confidence 77777777777777776 667777 77777777777777777777777776 6677777777777777777766665
Q ss_pred cc
Q 007677 338 VV 339 (593)
Q Consensus 338 ~l 339 (593)
.+
T Consensus 234 ~l 235 (241)
T 1k1a_A 234 GK 235 (241)
T ss_dssp C-
T ss_pred hh
Confidence 54
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.3e-37 Score=299.79 Aligned_cols=194 Identities=16% Similarity=0.171 Sum_probs=166.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC--CchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRM--SAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV 139 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 139 (593)
|.+|+||||+|+..|+.++|++|++.. .+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~ 84 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH 84 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence 889999999999999999999999720 17789999999999999999999999999999999986 788999999999
Q ss_pred HHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677 140 RAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN 219 (593)
Q Consensus 140 ~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~ 219 (593)
+|+..|+.+++++|++.++.. ....+.+|
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~-----------------------------~~~~~~~~---------------------- 113 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPG-----------------------------TLDLEARN---------------------- 113 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTT-----------------------------SCCTTCCC----------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCc-----------------------------cccccccC----------------------
Confidence 999999999999998876400 00111122
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCcccccc-CCCCchHHHHHHHcCchhH
Q 007677 220 KEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKAD-KKDNYTIFHIAVKNRLEDL 298 (593)
Q Consensus 220 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~~g~t~Lh~Av~~~~~~i 298 (593)
..|.||||.|+..|+.+++++|+++++++ +..| .. |+||||+|+.+|+.++
T Consensus 114 --------------------------~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~-g~t~L~~A~~~~~~~~ 165 (241)
T 1k1a_A 114 --------------------------YDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKS-GRSPLIHAVENNSLSM 165 (241)
T ss_dssp --------------------------TTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTT-CCCHHHHHHHTTCHHH
T ss_pred --------------------------cCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccC-CCcHHHHHHHcCCHHH
Confidence 45578888888888999999999999998 5666 67 9999999999999999
Q ss_pred HHHHhcccCccccccccccCCCCchhHhhhhhCCCcccccc
Q 007677 299 FKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVV 339 (593)
Q Consensus 299 v~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l 339 (593)
+++|++.|++ ++.+|..|+||||+|++.++.++++.|
T Consensus 166 v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 166 VQLLLQHGAN----VNAQMYSGSSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp HHHHHHTTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999998 889999999999999999998887765
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.7e-36 Score=291.85 Aligned_cols=226 Identities=19% Similarity=0.186 Sum_probs=186.7
Q ss_pred cccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHH
Q 007677 28 ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA 107 (593)
Q Consensus 28 ~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 107 (593)
..+.+|||.|+..|+.+.++++++..+..++.. +..|.||||+|+..|+.++|++|+++ +.+++.+|..|.||||+|
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHH
Confidence 356789999999999999999999877766665 88899999999999999999999998 788999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677 108 VASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLL 186 (593)
Q Consensus 108 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 186 (593)
+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|++++. .+..
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~------------------------ 135 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK------------------------ 135 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC------------------------
T ss_pred HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc------------------------
Confidence 9999999999999999886 7888899999999999999999999988775 3334
Q ss_pred HhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHH
Q 007677 187 HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSI 266 (593)
Q Consensus 187 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~ 266 (593)
|..|.||||+|+..++ .++++.|++.|++++..+ ..|.||||+|+..|+.+++++
T Consensus 136 ----------~~~g~t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~ 190 (231)
T 3aji_A 136 ----------DHYDATAMHRAAAKGN----------LKMVHILLFYKASTNIQD-----TEGNTPLHLACDEERVEEAKF 190 (231)
T ss_dssp ----------CTTSCCHHHHHHHHTC----------HHHHHHHHHTTCCSCCCC-----TTSCCHHHHHHHTTCHHHHHH
T ss_pred ----------CCCCCcHHHHHHHcCC----------HHHHHHHHhcCCCccccC-----CCCCCHHHHHHHCCCHHHHHH
Confidence 4445555555555554 555555555555544333 567888888888889999999
Q ss_pred HHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677 267 LIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI 308 (593)
Q Consensus 267 Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~ 308 (593)
|+++|+++ +.+|.. |+||||+|+..++.+++++|.++|++
T Consensus 191 Ll~~ga~~-~~~~~~-g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 191 LVTQGASI-YIENKE-EKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHTTCCS-CCCCTT-SCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCCC-CCCCCC-CCCHHHHHHhhHHHHHHHHHcccccc
Confidence 99999998 788998 99999999999999999999988764
No 24
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-37 Score=309.92 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=155.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS 143 (593)
Q Consensus 64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 143 (593)
.|.||||.||..|+.++|++|+++ +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~ 115 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAAS 115 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHH
Confidence 345556666665666666655555 4555555555556666666556666666666555554 4555555566666665
Q ss_pred cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhH
Q 007677 144 LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEA 222 (593)
Q Consensus 144 ~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~ 222 (593)
.|+.+++++|+++++ .+..+..|.||||.|+..++.++++.++...+...+..+..+.++++
T Consensus 116 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~----------------- 178 (299)
T 1s70_B 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML----------------- 178 (299)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-----------------
T ss_pred cCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH-----------------
Confidence 555666665555555 44455555555555555555555555555544333333222222222
Q ss_pred HHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHH
Q 007677 223 ETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFI 302 (593)
Q Consensus 223 ~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~L 302 (593)
..+..++..+..... ..+..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+.+|+.+++++|
T Consensus 179 -~~~~~~l~~~~~~~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~-g~tpL~~A~~~~~~~~v~~L 251 (299)
T 1s70_B 179 -RDARQWLNSGHINDV----RHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYD-GWTPLHAAAHWGKEEACRIL 251 (299)
T ss_dssp -HHHHHHHHHTCCCCC----CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTT-CCCHHHHHHHTTCHHHHHHH
T ss_pred -HHHHHHHhccCcchh----hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCC-CCcHHHHHHhcCCHHHHHHH
Confidence 122223333322211 12367899999999999999999999999998 889999 99999999999999999999
Q ss_pred hcccCccccccccccCCCCchhHhhhhh
Q 007677 303 YDIKPIADLMVDCTDEKGNNILHLAGEL 330 (593)
Q Consensus 303 l~~~~~~~~lin~~D~~G~T~LH~A~~~ 330 (593)
+++|++ ++.+|..|+||||+|++.
T Consensus 252 l~~gad----~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 252 VENLCD----MEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHTTCC----TTCCCTTSCCTTTSCCSG
T ss_pred HHcCCC----CCCcCCCCCCHHHHHHHH
Confidence 999998 789999999999999753
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.6e-36 Score=290.59 Aligned_cols=223 Identities=19% Similarity=0.169 Sum_probs=193.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
+..++||||.|+..|+.+.+++|++.. +..++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence 456899999999999999999999985 5668889999999999999999999999999999986 78899999999999
Q ss_pred HHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677 142 ASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE 221 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~ 221 (593)
+..|+.+++++|++++. ..+.+|..|.||||+|+..++
T Consensus 81 ~~~~~~~~v~~Ll~~g~---------------------------------~~~~~~~~g~t~L~~A~~~~~--------- 118 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGA---------------------------------HVNAVNQNGCTPLHYAASKNR--------- 118 (231)
T ss_dssp HHHTCHHHHHHHHHTTC---------------------------------CTTCCCTTSCCHHHHHHHTTC---------
T ss_pred HHcCHHHHHHHHHHcCC---------------------------------CCCCCCCCCCCHHHHHHHcCC---------
Confidence 99999999999998875 123455566666666666666
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHH
Q 007677 222 AETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKF 301 (593)
Q Consensus 222 ~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~ 301 (593)
.++++.|++.|.+++..+ ..|.||||.|+..|+.+++++|+++++++ +.+|.. |+||||+|+..|+.+++++
T Consensus 119 -~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~~~~~~v~~ 190 (231)
T 3aji_A 119 -HEIAVMLLEGGANPDAKD-----HYDATAMHRAAAKGNLKMVHILLFYKAST-NIQDTE-GNTPLHLACDEERVEEAKF 190 (231)
T ss_dssp -HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT-SCCHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHcCCCCCCcC-----CCCCcHHHHHHHcCCHHHHHHHHhcCCCc-cccCCC-CCCHHHHHHHCCCHHHHHH
Confidence 666666766666655443 67899999999999999999999999998 789999 9999999999999999999
Q ss_pred HhcccCccccccccccCCCCchhHhhhhhCCCccccccc
Q 007677 302 IYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNVVS 340 (593)
Q Consensus 302 Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~l~ 340 (593)
|+++|++ ++.+|..|+||||+|++.++.+++++|.
T Consensus 191 Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~i~~lL~ 225 (231)
T 3aji_A 191 LVTQGAS----IYIENKEEKTPLQVAKGGLGLILKRLAE 225 (231)
T ss_dssp HHHTTCC----SCCCCTTSCCHHHHSCHHHHHHHHHHHH
T ss_pred HHHCCCC----CCCCCCCCCCHHHHHHhhHHHHHHHHHc
Confidence 9999998 7899999999999999988877776654
No 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.9e-36 Score=286.11 Aligned_cols=212 Identities=17% Similarity=0.204 Sum_probs=146.6
Q ss_pred cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhc-hhcCCChHHHHHH
Q 007677 30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAK-QNKIGCTAVFYAV 108 (593)
Q Consensus 30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~ 108 (593)
|+||||.|+..|+.+.++.|+++.+...+.. |..|.||||+|+..|+.+++++|++++...+++. +|..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-DQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccC-CCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 4566666666666666666666643333323 6666666666666666666666666622244444 5566666666666
Q ss_pred HcCCHHHHHHHHhcC--CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677 109 ASESVELVKATMKGN--EGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLL 186 (593)
Q Consensus 109 ~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 186 (593)
..|+.+++++|+++| +++ +.++..|.||||+|+..|+.+++++|++++.
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------------- 131 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGA---------------------------- 131 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCC----------------------------
Confidence 666666666666665 443 5556666666666666666666666655442
Q ss_pred HhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHH
Q 007677 187 HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSI 266 (593)
Q Consensus 187 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~ 266 (593)
.++.+| ..|.||||+|+..|+.+++++
T Consensus 132 -----~~~~~~------------------------------------------------~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 132 -----SVRIKD------------------------------------------------KFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp -----CSCCCC------------------------------------------------TTSCCHHHHHHHTTCHHHHHH
T ss_pred -----CccccC------------------------------------------------CCCCCHHHHHHHcCCHHHHHH
Confidence 112222 455777777888888999999
Q ss_pred HHHHC-CCccccccCCCCchHHHHHHHcCchhHHHHHh-cccCccccccccccCCCCchhHhhhhh
Q 007677 267 LIREY-PDLMWKADKKDNYTIFHIAVKNRLEDLFKFIY-DIKPIADLMVDCTDEKGNNILHLAGEL 330 (593)
Q Consensus 267 Ll~~~-~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll-~~~~~~~~lin~~D~~G~T~LH~A~~~ 330 (593)
|++++ .++ +.+|.. |+||||+|+..|+.+++++|+ +.|++ ++.+|..|+||||+|++.
T Consensus 159 Ll~~g~~~~-~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~~ga~----~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 159 LCGLGKSAV-NWQDKQ-GWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHTTTCCCS-CCCCTT-SCCHHHHHHHTTCHHHHHHHHHHHCCC----SCCBCTTSCBGGGGCSST
T ss_pred HHhcCcccc-cCcCCC-CCCHHHHHHHcCCHHHHHHHHHhcCCC----CCccCCCCCcHHHHHHHH
Confidence 99999 665 888998 999999999999999999999 88988 788999999999999765
No 27
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.4e-36 Score=297.82 Aligned_cols=250 Identities=13% Similarity=-0.001 Sum_probs=188.4
Q ss_pred CccccccchHhHHHHHcCCHHHHHHHHhhCccc---cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCC
Q 007677 24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGE---IGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIG 100 (593)
Q Consensus 24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g 100 (593)
..+|..|+||||.|+..|+.++++.|++. +.+ ++.+ +..|.||||+|+..|+.++|++|+++ +++++.+|..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g 78 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQ-NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGG 78 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTS
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCccccccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCC
Confidence 35799999999999999999999999986 444 6666 88999999999999999999999999 89999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCC------------ccCCCCCCCHHHHHHHcCCHHHHH-HHHHhcc-cccCCcch
Q 007677 101 CTAVFYAVASESVELVKATMKGNEGIA------------TLPDNDGMLPIVRAASLGRTEVVE-FLYRETK-NSLKDDDC 166 (593)
Q Consensus 101 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~------------~~~~~~g~tpL~~A~~~g~~~iv~-~Ll~~~~-~~~~~~~g 166 (593)
.||||+|+..|+.+++++|++++++.. ......+.+|++.++..+...... .+...+. .+..+..|
T Consensus 79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 999999999999999999999987632 122344667887777765544333 3333333 66788999
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcchhhhcccc-CCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHh
Q 007677 167 IELLVQLIETGLYAVALQLLHDHRYLATKRAK-NKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELI 245 (593)
Q Consensus 167 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 245 (593)
.||||.|+..|+.++++.|++. +..++.++. .|.||||+|+..++ .++++.|++.|++++..+
T Consensus 159 ~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~~~----------~~~v~~Ll~~gad~~~~d----- 222 (282)
T 1oy3_D 159 HTPLHVAVIHKDAEMVRLLRDA-GADLNKPEPTCGRTPLHLAVEAQA----------ASVLELLLKAGADPTARM----- 222 (282)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTC----------HHHHHHHHHTTCCTTCCC-----
T ss_pred cCHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcCHHHHHHHcCC----------HHHHHHHHHcCCCCcccc-----
Confidence 9999999999999999999998 556666664 59999999999999 899999999999887655
Q ss_pred hcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCc
Q 007677 246 EQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRL 295 (593)
Q Consensus 246 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~ 295 (593)
..|.||||+|+..|+.+++++|+++|+++ +.+|.. |.|||++|.....
T Consensus 223 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~-g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 223 YGGRTPLGSALLRPNPILARLLRAHGAPE-PEDGGD-KLSPCSSSGSDSD 270 (282)
T ss_dssp TTSCCHHHHHHTSSCHHHHHHHHHTTCCC-CCCC----------------
T ss_pred cCCCCHHHHHHHcCCcHHHHHHHHcCCCc-CcCCCc-ccccccccCCccc
Confidence 78999999999999999999999999998 899999 9999999987653
No 28
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.8e-35 Score=285.91 Aligned_cols=227 Identities=19% Similarity=0.182 Sum_probs=188.5
Q ss_pred CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677 23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT 102 (593)
Q Consensus 23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 102 (593)
.+.+|..|.||||.|+..|+.+++++|++. +.+++.. +..|.||||+|+..|+.++|++|+++ +++++.+|..|.|
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t 79 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGST 79 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCC
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHc-CCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCc
Confidence 346789999999999999999999999987 7888876 88999999999999999999999998 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHH
Q 007677 103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAV 181 (593)
Q Consensus 103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~ 181 (593)
|||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence 99999999999999999999954458899999999999999999999999999876 44444445555555555554444
Q ss_pred HHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcH
Q 007677 182 ALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNV 261 (593)
Q Consensus 182 v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~ 261 (593)
+ +.|++.|++++..+ ..|.||||+|++.|+.
T Consensus 160 ~--------------------------------------------~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~ 190 (237)
T 3b7b_A 160 A--------------------------------------------EILLAAKCDLHAVN-----IHGDSPLHIAARENRY 190 (237)
T ss_dssp H--------------------------------------------HHHHTTTCCTTCCC-----TTCCCHHHHHHHTTCH
T ss_pred H--------------------------------------------HHHHHcCCCCCCcC-----CCCCCHHHHHHHhCCH
Confidence 4 44444444444332 5667888888888889
Q ss_pred HHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677 262 QFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD 304 (593)
Q Consensus 262 ~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~ 304 (593)
+++++|+++|+++ +.+|.. |+||||+|+.+++.+.+..+++
T Consensus 191 ~~v~~Ll~~gad~-~~~d~~-g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 191 DCVVLFLSRDSDV-TLKNKE-GETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHHHHHTTTCCT-TCCCTT-SCCHHHHSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHcCCCC-CccCCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 788988 9999999999998876666654
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-36 Score=299.01 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=87.0
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccc-------cccccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCchhhhch
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGE-------IGVEITNHGKTALHVAAEANRI-DFVKKLLKRMSAEDLAKQ 96 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-------~~~~~~~~g~T~Lh~Aa~~g~~-~~v~~Ll~~~~~~~~~~~ 96 (593)
.+|.++.++|+.||..|+.++|+.|++....+ ++.. +..|.||||.|+..++. ++++.|++. |+++|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~ 82 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVT 82 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------C--CCCTTCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCc
Confidence 45888889999999999999999999864322 2333 67788999999988775 478888888 8899999
Q ss_pred hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677 97 NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK 158 (593)
Q Consensus 97 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 158 (593)
|.+|+||||+|+..|+.++|++|++.|+++ ..++..|.||+|+|+..++.+++++|++.++
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~ 143 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNA 143 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCC
Confidence 999999999999999999999999999886 7888899999999999999999998887764
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.2e-35 Score=292.46 Aligned_cols=236 Identities=13% Similarity=0.057 Sum_probs=192.9
Q ss_pred HHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHH
Q 007677 38 ALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVK 117 (593)
Q Consensus 38 a~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~ 117 (593)
+...+.+.+..++.+. +++.+ |..|.||||+|+..|+.++|++|+++ +++++.+| |+||||+|+..|+.++++
T Consensus 7 i~~~~~~~v~~lL~~~--~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~--g~t~L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 7 INTWKSKQLKSFLSSK--DTFKA-DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKIVK 79 (285)
T ss_dssp GGGCCHHHHHHHHHST--TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCCT--TCCHHHHHTTSSSCHHHH
T ss_pred HHhcCHHHHHHHHHhC--CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCC--CCCHHHHHHHcCCHHHHH
Confidence 3455666666677653 45655 78888888888888888888888888 77777774 888888888888888888
Q ss_pred HHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcch-hHHHHHHHHcCCHHHHHHHHHhcchhhhc
Q 007677 118 ATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDC-IELLVQLIETGLYAVALQLLHDHRYLATK 195 (593)
Q Consensus 118 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g-~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~ 195 (593)
+|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..| .||||.|+..|+.++++.|++.....
T Consensus 80 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--- 155 (285)
T 3kea_A 80 ILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--- 155 (285)
T ss_dssp HHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---
T ss_pred HHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---
Confidence 888888886 6788888888888888888888888888887 77777777 78888888888888888888875433
Q ss_pred ccc-CCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhH-HHHHHHcCcHHHHHHHHHHCCC
Q 007677 196 RAK-NKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPREL-IHDAADRGNVQFLSILIREYPD 273 (593)
Q Consensus 196 ~d~-~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tp-Lh~Aa~~g~~~~v~~Ll~~~~~ 273 (593)
.+. .|.||||+|+..++ .+++++|++.|++++..+ ..|.|| ||+|+..|+.+++++|+++|++
T Consensus 156 ~~~~~g~t~L~~A~~~g~----------~~~v~~Ll~~gad~n~~~-----~~g~t~~L~~A~~~~~~~~v~~Ll~~gad 220 (285)
T 3kea_A 156 FDLAILLSCIHITIKNGH----------VDMMILLLDYMTSTNTNN-----SLLFIPDIKLAIDNKDIEMLQALFKYDIN 220 (285)
T ss_dssp CCCSTHHHHHHHHHHTTC----------HHHHHHHHHHHHHTCTTC-----CCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred ccccCCccHHHHHHHcCh----------HHHHHHHHHcCCCCCccc-----CCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence 233 78999999999988 889999999998888655 788887 9999999999999999999998
Q ss_pred ccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677 274 LMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI 308 (593)
Q Consensus 274 ~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~ 308 (593)
+ +..|. .|+..|+.+++++|+++|.+
T Consensus 221 ~-~~~~~--------~a~~~~~~~iv~~Ll~~g~~ 246 (285)
T 3kea_A 221 I-YSANL--------ENVLLDDAEIAKMIIEKHVE 246 (285)
T ss_dssp S-TTTTG--------GGGTTTCHHHHHHHHHHHHH
T ss_pred C-CCCCh--------hhhhcCCHHHHHHHHHcCCC
Confidence 8 45543 45778999999999999987
No 31
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1e-34 Score=278.71 Aligned_cols=198 Identities=19% Similarity=0.201 Sum_probs=152.6
Q ss_pred HHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhC-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677 9 KQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKY-EGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR 87 (593)
Q Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~-~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~ 87 (593)
+.++.+...+.+. ....|..|+||||.|+..|+.++++.|++.. ..+++...+..|.||||+|+..|+.+++++|+++
T Consensus 16 ~~v~~Ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 94 (228)
T 2dzn_A 16 FKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR 94 (228)
T ss_dssp HHHHHHHHHCGGG-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSS
T ss_pred HHHHHHHhcCccc-cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 3444444444322 2257899999999999999999999999973 1555552488999999999999999999999998
Q ss_pred CCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc-c-cccCCcc
Q 007677 88 MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET-K-NSLKDDD 165 (593)
Q Consensus 88 ~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-~-~~~~~~~ 165 (593)
+.+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+ . .+..|..
T Consensus 95 g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~ 173 (228)
T 2dzn_A 95 PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQ 173 (228)
T ss_dssp SSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTT
T ss_pred CCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCC
Confidence 323889999999999999999999999999999999996 889999999999999999999999999988 3 4445555
Q ss_pred hhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHH
Q 007677 166 CIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLA 208 (593)
Q Consensus 166 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~ 208 (593)
|.||||.|+..|+.++++.|++..+.+++.+|.+|.||+|+|+
T Consensus 174 g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~ 216 (228)
T 2dzn_A 174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 216 (228)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence 5555555555555555555553334444555555555555554
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-36 Score=296.15 Aligned_cols=215 Identities=14% Similarity=0.214 Sum_probs=150.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCc------hhhhchhcCCChHHHHHHHcCCH-HHHHHHHhcCCCCCccCCCCC
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSA------EDLAKQNKIGCTAVFYAVASESV-ELVKATMKGNEGIATLPDNDG 134 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~------~~~~~~d~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~~~~g 134 (593)
|..+.+||+.||+.|+.++|++|++.... ..++..|..|.||||.|+..++. ++++.|++.|+++ +.+|.+|
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G 86 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDG 86 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTS
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCC
Confidence 66778999999999999999999988411 12667788899999999988876 4889999999997 8899999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCC
Q 007677 135 MLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLG 213 (593)
Q Consensus 135 ~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~ 213 (593)
+||||+|+..|+.+++++|++.++ .+.. +.+|.||+|+|+..++
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~----------------------------------~~~g~t~l~~a~~~~~- 131 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGANAGAR----------------------------------NADQAVPLHLACQQGH- 131 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCCTTCC----------------------------------CTTCCCHHHHHHHHTC-
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCcCcc----------------------------------CCCCCCccccccccCh-
Confidence 999999999999999999998876 4444 4445555555555554
Q ss_pred cccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHc
Q 007677 214 DKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKN 293 (593)
Q Consensus 214 ~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~ 293 (593)
.++++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++|+++ +..|.. |+||||+|+.+
T Consensus 132 ---------~~~~~~Ll~~g~~~n~~d-----~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~-g~t~Lh~A~~~ 195 (269)
T 4b93_B 132 ---------FQVVKCLLDSNAKPNKKD-----LSGNTPLIYACSGGHHELVALLLQHGASI-NASNNK-GNTALHEAVIE 195 (269)
T ss_dssp ---------HHHHHHHHHTTCCSCCCC-----TTCCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTT-SCBHHHHHHHT
T ss_pred ---------HHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccC-CCcHHHHHHHc
Confidence 455555555555554433 56788888888888899999999999998 789999 99999999999
Q ss_pred CchhHHHHHhcccCccccccccccCCCCchhHhhhhhCC
Q 007677 294 RLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAP 332 (593)
Q Consensus 294 ~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~ 332 (593)
|+.+++++|+++|++ ++.+|.+|+||||+|+++++
T Consensus 196 g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 196 KHVFVVELLLLHGAS----VQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TCHHHHHHHHHTTCC----SCCCCTTSCCSGGGSCTTCH
T ss_pred CCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHhCCc
Confidence 999999999999998 78999999999999987664
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=9.1e-36 Score=298.50 Aligned_cols=250 Identities=18% Similarity=0.204 Sum_probs=214.3
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
..+..|.||||.||..|+.+.++.|++. +.+++.. |..|.||||+|+..|+.++|++|+++ +++++.+|..|.|||
T Consensus 35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL 110 (299)
T 1s70_B 35 KVKFDDGAVFLAACSSGDTEEVLRLLER-GADINYA-NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPL 110 (299)
T ss_dssp CCEECHHHHHHHHHHHTCHHHHHHHHHH-CCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred ccccCCccHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence 3466788999999999999999999997 7888887 89999999999999999999999998 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHHHHcCCHHHH
Q 007677 105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQLIETGLYAVA 182 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v 182 (593)
|+|+..|+.+++++|+++|+++ +..+..|.||||+|+..++.+++++++.... .+..+..+.++++ ..+
T Consensus 111 ~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~ 181 (299)
T 1s70_B 111 HAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDA 181 (299)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHH
T ss_pred HHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHH
Confidence 9999999999999999999996 7889999999999999999999999987655 2222333334333 234
Q ss_pred HHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHH
Q 007677 183 LQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQ 262 (593)
Q Consensus 183 ~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~ 262 (593)
..++..........+..|.||||+|+..++ .++++.|++.|++++..+ ..|.||||+|+..|+.+
T Consensus 182 ~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~----------~~~v~~Ll~~g~d~~~~d-----~~g~tpL~~A~~~~~~~ 246 (299)
T 1s70_B 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGY----------TEVLKLLIQARYDVNIKD-----YDGWTPLHAAAHWGKEE 246 (299)
T ss_dssp HHHHHHTCCCCCCCTTTCCCHHHHHHHHTC----------HHHHHHHHTTTCCTTCCC-----TTCCCHHHHHHHTTCHH
T ss_pred HHHHhccCcchhhhcCCCCCHHHHHHHCCc----------HHHHHHHHHcCCCCCCcC-----CCCCcHHHHHHhcCCHH
Confidence 456666555555678899999999999999 899999999998887654 78999999999999999
Q ss_pred HHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677 263 FLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDI 305 (593)
Q Consensus 263 ~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~ 305 (593)
++++|+++|+++ +.+|.. |+||||+|++.. .+.++.+++.
T Consensus 247 ~v~~Ll~~gad~-~~~d~~-g~t~l~~A~~~~-~~~l~~l~~~ 286 (299)
T 1s70_B 247 ACRILVENLCDM-EAVNKV-GQTAFDVADEDI-LGYLEELQKK 286 (299)
T ss_dssp HHHHHHHTTCCT-TCCCTT-SCCTTTSCCSGG-GHHHHHHHHH
T ss_pred HHHHHHHcCCCC-CCcCCC-CCCHHHHHHHHH-HHHHHHHHHH
Confidence 999999999998 889999 999999997654 4444444443
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=281.97 Aligned_cols=232 Identities=18% Similarity=0.190 Sum_probs=172.0
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhc-hhcCCChH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAK-QNKIGCTA 103 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~Tp 103 (593)
..|..|.++||.|+..|+.+.+++|++. +.+++.+ +..|.||||+|+..|+.++|++|+++ +.+++. .+..|.||
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~ 79 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEA-GYDVRQP-DKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTP 79 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCCh
Confidence 4577777888888888888888877775 5667665 77778888888888888888888877 555543 33447788
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHH
Q 007677 104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVAL 183 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 183 (593)
||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|++++.
T Consensus 80 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~------------------------- 133 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ------------------------- 133 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-------------------------
T ss_pred hHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCC-------------------------
Confidence 88888888888888888877775 6677778888888888888888877777664
Q ss_pred HHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHH
Q 007677 184 QLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQF 263 (593)
Q Consensus 184 ~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~ 263 (593)
.++.+|.+|.||||+|+..++ ..++++.|++.+.+++..+. ..|.||||+|+..|+.++
T Consensus 134 --------~~~~~~~~g~t~l~~a~~~~~---------~~~~~~~L~~~~~~~~~~~~----~~g~t~L~~A~~~~~~~~ 192 (240)
T 3eu9_A 134 --------DVDMMDQNGMTPLMWAAYRTH---------SVDPTRLLLTFNVSVNLGDK----YHKNTALHWAVLAGNTTV 192 (240)
T ss_dssp --------CTTCCCTTSCCHHHHHHHHCC---------SSTTHHHHHHTTCCTTCCCT----TTCCCHHHHHHHHTCHHH
T ss_pred --------CccccCCCCCcHHHHHHHhCC---------hHHHHHHHHhcCCCcchhhc----cCCCcHHHHHHHcCCHHH
Confidence 233455556666666664432 03455666666665554331 267899999999999999
Q ss_pred HHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCcc
Q 007677 264 LSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIA 309 (593)
Q Consensus 264 v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~ 309 (593)
+++|+++|+++ +..|.. |+||||+|+++|+.+++++|++.+...
T Consensus 193 v~~Ll~~g~~~-~~~~~~-g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 193 ISLLLEAGANV-DAQNIK-GESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHTCCT-TCBCTT-SCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHcCCCC-CCcCCC-CCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 99999999998 788998 999999999999999999999988763
No 35
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-36 Score=307.12 Aligned_cols=267 Identities=13% Similarity=0.041 Sum_probs=208.5
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhch----------
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ---------- 96 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~---------- 96 (593)
+....+|+| ....+.+++|+++ |.+++.. +..|.|++| |+.++|+.|+++ +.+.+..
T Consensus 20 ~~~~~~~~~----~~~~dlv~~ll~~-ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~ 86 (327)
T 1sw6_A 20 NDRTAGPII----TFTHDLTSDFLSS-PLKIMKA-LPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDS 86 (327)
T ss_dssp -----CCEE----ECCTTCCCSTTTS-SCCCEEC-BCCCCCCCH-----HHHHHHHHHHHH--HHC--------------
T ss_pred ccccccchh----hhcCchHHHHhhC-CcccccC-CCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhccc
Confidence 444556666 3555678888876 8999987 899999988 999999999998 6665431
Q ss_pred -------hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCcc-CCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchh
Q 007677 97 -------NKIGCTAVFYAVASESVELVKATMKGNEGIATL-PDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCI 167 (593)
Q Consensus 97 -------d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~ 167 (593)
.....+.+|.|+..+..++++.|++.|+++ +. +|..|.||||+|+..|+.+++++|+++++ .+..+..|.
T Consensus 87 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~ 165 (327)
T 1sw6_A 87 SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165 (327)
T ss_dssp -----------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred ccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 111223458888888899999999999997 56 89999999999999999999999999999 888999999
Q ss_pred HHHHHHHHcCC---HHHHHHHHHhcchhhhccccCCccHHHHHHh----cCCCcccccchhHHHHHHHHHHHHHhcC---
Q 007677 168 ELLVQLIETGL---YAVALQLLHDHRYLATKRAKNKETALHVLAR----KNLGDKDRKNKEAETLVESLWEEVILLS--- 237 (593)
Q Consensus 168 t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~----~~~~~~~~~~~~~~~~~~~L~~~~~~~~--- 237 (593)
||||+|+..|+ .++++.|++.....++.+|..|+||||+|+. .++ .++++.|++.+....
T Consensus 166 TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~----------~~~v~~Ll~~~~~~~~~~ 235 (327)
T 1sw6_A 166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC----------SAAAKYYLDILMGWIVKK 235 (327)
T ss_dssp CHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC----------HHHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc----------HHHHHHHHHHHHHHHhcc
Confidence 99999999988 6888888888667788999999999999998 677 889999988854221
Q ss_pred ------------hHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcc
Q 007677 238 ------------KQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDI 305 (593)
Q Consensus 238 ------------~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~ 305 (593)
..+.+..+..|.||||.|+. +++|+++ ++ +.+|.. |+||||+|+++|+.+++++|+++
T Consensus 236 ~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~~-n~~d~~-G~TpLh~A~~~g~~~~v~~Ll~~ 305 (327)
T 1sw6_A 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--ML-NAQDSN-GDTCLNIAARLGNISIVDALLDY 305 (327)
T ss_dssp GGCCEEEC----------------CHHHHHCS------HHHHHHH--TT-TCCCTT-SCCHHHHHHHHCCHHHHHHHHHT
T ss_pred cchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--CC-CCCCCC-CCCHHHHHHHcCCHHHHHHHHHc
Confidence 22334456889999999996 8999998 44 678999 99999999999999999999999
Q ss_pred cCccccccccccCCCCchhHhhhhhC
Q 007677 306 KPIADLMVDCTDEKGNNILHLAGELA 331 (593)
Q Consensus 306 ~~~~~~lin~~D~~G~T~LH~A~~~~ 331 (593)
|++ ++.+|..|+||||+|++.|
T Consensus 306 Gad----~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 306 GAD----PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TCC----TTCCCTTSCCGGGGTCC--
T ss_pred CCC----CcccCCCCCCHHHHHHhcC
Confidence 999 8899999999999999764
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2e-34 Score=286.79 Aligned_cols=221 Identities=15% Similarity=0.161 Sum_probs=202.7
Q ss_pred CccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677 24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA 103 (593)
Q Consensus 24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 103 (593)
+.+|..|+||||.|+..|+.++++.|++. +.+++.+ +|.||||+|+..|+.++|++|+++ +++++.+|..|.||
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~ 98 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNA-GALKNLL---ENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTA 98 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcH
Confidence 37799999999999999999999999997 7888765 589999999999999999999999 89999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCC-CCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHH
Q 007677 104 VFYAVASESVELVKATMKGNEGIATLPDNDG-MLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVA 182 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v 182 (593)
||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|+++++.......|.||||.|+..|+.+++
T Consensus 99 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 99 LYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 99999999999999999999997 7889999 899999999999999999999998332233899999999999999999
Q ss_pred HHHHHhcchhhhccccCCccH-HHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcH
Q 007677 183 LQLLHDHRYLATKRAKNKETA-LHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNV 261 (593)
Q Consensus 183 ~~Ll~~~~~~~~~~d~~g~t~-Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~ 261 (593)
+.|+++ +.+++.+|..|.|| ||+|+..++ .+++++|++.|++++..+ +.|+..|+.
T Consensus 178 ~~Ll~~-gad~n~~~~~g~t~~L~~A~~~~~----------~~~v~~Ll~~gad~~~~~------------~~a~~~~~~ 234 (285)
T 3kea_A 178 ILLLDY-MTSTNTNNSLLFIPDIKLAIDNKD----------IEMLQALFKYDINIYSAN------------LENVLLDDA 234 (285)
T ss_dssp HHHHHH-HHHTCTTCCCBCCTTHHHHHHHTC----------HHHHHHHTTSCBCSTTTT------------GGGGTTTCH
T ss_pred HHHHHc-CCCCCcccCCCCChHHHHHHHcCC----------HHHHHHHHHcCCCCCCCC------------hhhhhcCCH
Confidence 999998 78889999999998 999999999 999999999999887654 256779999
Q ss_pred HHHHHHHHHCCCc
Q 007677 262 QFLSILIREYPDL 274 (593)
Q Consensus 262 ~~v~~Ll~~~~~~ 274 (593)
+++++|+++|.++
T Consensus 235 ~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 235 EIAKMIIEKHVEY 247 (285)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCC
Confidence 9999999999886
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.7e-34 Score=276.26 Aligned_cols=216 Identities=20% Similarity=0.213 Sum_probs=170.7
Q ss_pred CCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHH
Q 007677 41 GDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATM 120 (593)
Q Consensus 41 g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll 120 (593)
|+.+++++|+++ +.+++...|..|.||||+|+..|+.++|++|+++ +++++.+|..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~-g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEET-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHc-CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 567777777776 6666655578899999999999999999999988 7888889999999999999999999999999
Q ss_pred hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCC
Q 007677 121 KGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNK 200 (593)
Q Consensus 121 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g 200 (593)
++++...+.++..|.||||+|+..|+.+++++|+++++ .++.+|..|
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------------------~~~~~~~~g 125 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA---------------------------------DVNAVDDLG 125 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---------------------------------CTTCBCTTS
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC---------------------------------CCcCcCCCC
Confidence 98875457888889999999999999999998888765 123344455
Q ss_pred ccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccC
Q 007677 201 ETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADK 280 (593)
Q Consensus 201 ~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~ 280 (593)
.||||+|+..++ .++++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++++++ +.+|.
T Consensus 126 ~t~L~~A~~~~~----------~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~ 189 (223)
T 2f8y_A 126 KSALHWAAAVNN----------VDAAVVLLKNGANKDMQN-----NREETPLFLAAREGSYETAKVLLDHFANR-DITDH 189 (223)
T ss_dssp CBHHHHHHHTTC----------HHHHHHHHHTTCCTTCCC-----TTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCT
T ss_pred CcHHHHHHHcCC----------HHHHHHHHHcCCCCCCcC-----CCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccc
Confidence 555555555555 555555555555544333 56788888888889999999999999998 78898
Q ss_pred CCCchHHHHHHHcCchhHHHHHhcccCcc
Q 007677 281 KDNYTIFHIAVKNRLEDLFKFIYDIKPIA 309 (593)
Q Consensus 281 ~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~ 309 (593)
. |+||||+|+++++.+++++|+++|+..
T Consensus 190 ~-g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 190 M-DRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp T-CCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred c-CCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 8 999999999999999999999998763
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=273.44 Aligned_cols=198 Identities=19% Similarity=0.176 Sum_probs=154.8
Q ss_pred HHHHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677 8 SKQLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKR 87 (593)
Q Consensus 8 ~~~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~ 87 (593)
.+.++.+.+.+.+.+ .+|..|.||||.|+..|+.++++.|++. +.+++...+..|.||||+|+..|+.+++++|++.
T Consensus 22 ~~~~~~Ll~~g~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~ 98 (240)
T 3eu9_A 22 YERCRELVEAGYDVR--QPDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98 (240)
T ss_dssp HHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred hHHHHHHHHcCCCcC--CCCCCCCCHHHHHHHhCCHHHHHHHHHc-CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHc
Confidence 345556666655443 7789999999999999999999999997 5666655466799999999999999999999999
Q ss_pred CCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC-HHHHHHHHHhcc-cccCCc-
Q 007677 88 MSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR-TEVVEFLYRETK-NSLKDD- 164 (593)
Q Consensus 88 ~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~iv~~Ll~~~~-~~~~~~- 164 (593)
+++++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++ .+++++|++.+. .+..+.
T Consensus 99 --g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~ 175 (240)
T 3eu9_A 99 --GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY 175 (240)
T ss_dssp --TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTT
T ss_pred --CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhcc
Confidence 8999999999999999999999999999999999996 7899999999999997766 889999988876 444443
Q ss_pred chhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCC
Q 007677 165 DCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNL 212 (593)
Q Consensus 165 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~ 212 (593)
.|.||||.|+..|+.++++.|++. +..++.+|..|.||||+|++.++
T Consensus 176 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~ 222 (240)
T 3eu9_A 176 HKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIKGESALDLAKQRKN 222 (240)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCBCTTSCBHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCc
Confidence 555666666666666666655555 34444444444444444444444
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.8e-34 Score=277.48 Aligned_cols=222 Identities=18% Similarity=0.186 Sum_probs=166.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCC--chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMS--AEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV 139 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~--~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 139 (593)
|.+|.||||+|+..|+.+++++|++... +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 83 (236)
T 1ikn_D 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH 83 (236)
T ss_dssp --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHH
Confidence 6677777777777777777777776631 1257777777777777777777777777777777775 667777777777
Q ss_pred HHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCccccc
Q 007677 140 RAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRK 218 (593)
Q Consensus 140 ~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~ 218 (593)
+|+..|+.+++++|++.+. .. .....+..+..|.||||+|+..++
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~----------------------------~~~~~~~~~~~g~t~L~~A~~~~~------ 129 (236)
T 1ikn_D 84 LACEQGCLASVGVLTQSCTTPH----------------------------LHSILKATNYNGHTCLHLASIHGY------ 129 (236)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTS----------------------------SSCGGGCCCTTCCCHHHHHHHTTC------
T ss_pred HHHHcCCHHHHHHHHhcccchh----------------------------HHHHhhccCCCCCCHHHHHHHcCC------
Confidence 7777777777777777664 10 012234566667777777777776
Q ss_pred chhHHHHHHHHHHHHHhcChHHHHHHhh-cchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchh
Q 007677 219 NKEAETLVESLWEEVILLSKQEIWELIE-QPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLED 297 (593)
Q Consensus 219 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~-~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~ 297 (593)
.+++++|++.|++++..+ . .|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+.+|+.+
T Consensus 130 ----~~~v~~Ll~~g~~~~~~~-----~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~-g~tpl~~A~~~~~~~ 198 (236)
T 1ikn_D 130 ----LGIVELLVSLGADVNAQE-----PCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQ-GYSPYQLTWGRPSTR 198 (236)
T ss_dssp ----HHHHHHHHHHTCCTTCCC-----TTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-CCCCTT-CCCGGGGCTTSSCHH
T ss_pred ----HHHHHHHHHcCCCCCCCC-----CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccCC-CCCHHHHHHccCchH
Confidence 677777777776666543 4 7899999999999999999999999998 789999 999999999999999
Q ss_pred HHHHHhcccCccccccccccCCCCchhHhhhhhC
Q 007677 298 LFKFIYDIKPIADLMVDCTDEKGNNILHLAGELA 331 (593)
Q Consensus 298 iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~ 331 (593)
++++|+++|++.. ...++.+|+||.+.+....
T Consensus 199 ~~~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 199 IQQQLGQLTLENL--QMLPESEDEESYDTESEFT 230 (236)
T ss_dssp HHHHHHTTSCGGG--SSCCCCCTTTCCCCC----
T ss_pred HHHHHHHcchhhh--hcCCccchHHHHhhhcccc
Confidence 9999999999743 4578999999999887654
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.6e-33 Score=268.03 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=171.6
Q ss_pred CCHHHHHHHHHcCCchhhhch-hcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q 007677 76 NRIDFVKKLLKRMSAEDLAKQ-NKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLY 154 (593)
Q Consensus 76 g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 154 (593)
|+.+++++|+++ +.+++.. |..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 566777777777 5665544 677778888888777888888777777775 667777777777777777777777777
Q ss_pred HhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHH
Q 007677 155 RETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVI 234 (593)
Q Consensus 155 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~ 234 (593)
+.+ +...+.++..|.||||+|+..++ .++++.|++.++
T Consensus 79 ~~~--------------------------------~~~~~~~~~~g~t~L~~A~~~~~----------~~~~~~Ll~~g~ 116 (223)
T 2f8y_A 79 RNR--------------------------------ATDLDARMHDGTTPLILAARLAV----------EGMLEDLINSHA 116 (223)
T ss_dssp HBT--------------------------------TSCTTCCCTTCCCHHHHHHHHTC----------HHHHHHHHHTTC
T ss_pred HcC--------------------------------CCCcccCCCCCCcHHHHHHHhCc----------HHHHHHHHHcCC
Confidence 654 33456678889999999999888 899999999888
Q ss_pred hcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCccccccc
Q 007677 235 LLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVD 314 (593)
Q Consensus 235 ~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin 314 (593)
+++..+ ..|.||||+|+..|+.+++++|+++++++ +.+|.. |+||||+|+.+|+.+++++|+++|++ ++
T Consensus 117 ~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~ 185 (223)
T 2f8y_A 117 DVNAVD-----DLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR-EETPLFLAAREGSYETAKVLLDHFAN----RD 185 (223)
T ss_dssp CTTCBC-----TTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCC----TT
T ss_pred CCcCcC-----CCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC-CcCHHHHHHHcCCHHHHHHHHHcCCC----Cc
Confidence 877654 78899999999999999999999999998 788999 99999999999999999999999998 78
Q ss_pred cccCCCCchhHhhhhhCCCcccccc
Q 007677 315 CTDEKGNNILHLAGELAPQHRLNVV 339 (593)
Q Consensus 315 ~~D~~G~T~LH~A~~~~~~~~~~~l 339 (593)
.+|..|+||||+|++.++.++++.|
T Consensus 186 ~~~~~g~t~l~~A~~~~~~~i~~~L 210 (223)
T 2f8y_A 186 ITDHMDRLPRDIAQERMHHDIVRLL 210 (223)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred cccccCCCHHHHHHHhcchHHHHHH
Confidence 8999999999999999997766544
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.7e-32 Score=264.07 Aligned_cols=206 Identities=18% Similarity=0.160 Sum_probs=129.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCC----ccCCCCCCCHHHH
Q 007677 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIA----TLPDNDGMLPIVR 140 (593)
Q Consensus 65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~~ 140 (593)
|+||||+|++.|+.++|++|++.. +.+++.+|..|+||||+|+..|+.+++++|+++|+++. ..+|..|.||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 555666666666666665555543 45555555556666666666666666666665555431 2344456666666
Q ss_pred HHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677 141 AASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN 219 (593)
Q Consensus 141 A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~ 219 (593)
|+..|+.+++++|+++++ .+..+.... + ....+..|.+|.||||+|+..++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--~-------------------~~~~~~~~~~g~t~L~~A~~~~~------- 133 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSV--F-------------------HYRPHNLIYYGEHPLSFAACVGS------- 133 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGG--G-------------------SCCTTCSCCCCSSHHHHHHHHTC-------
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcc--e-------------------eecccccccCCCCHHHHHHHcCC-------
Confidence 666666666666665554 222221110 0 01122345567777777777666
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHH----HHHHHHCCCcc-----ccccCCCCchHHHHH
Q 007677 220 KEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFL----SILIREYPDLM-----WKADKKDNYTIFHIA 290 (593)
Q Consensus 220 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v----~~Ll~~~~~~~-----~~~d~~~g~t~Lh~A 290 (593)
.++++.|++.|++++..+ ..|.||||+|+..|+.+++ ++|++++++.. +.+|.. |+||||+|
T Consensus 134 ---~~~v~~Ll~~ga~~~~~d-----~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~-g~tpl~~A 204 (232)
T 2rfa_A 134 ---EEIVRLLIEHGADIRAQD-----SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ-GLTPFKLA 204 (232)
T ss_dssp ---HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT-SCCHHHHH
T ss_pred ---HHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC-CCCHHHHH
Confidence 667777777666665443 6677777777777777766 88888887763 577888 99999999
Q ss_pred HHcCchhHHHHHhcccCc
Q 007677 291 VKNRLEDLFKFIYDIKPI 308 (593)
Q Consensus 291 v~~~~~~iv~~Ll~~~~~ 308 (593)
+++|+.+++++|+++|..
T Consensus 205 ~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcCcc
Confidence 999999999999988766
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.1e-31 Score=258.36 Aligned_cols=197 Identities=21% Similarity=0.172 Sum_probs=176.8
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhh-----hchhcCCChH
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDL-----AKQNKIGCTA 103 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~-----~~~d~~g~Tp 103 (593)
.|+||||.|+..|+.+.++.|++..+.+++.+ |..|.||||+|+..|+.++|++|++. ++++ +.+|..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEA--APELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CchhccccccccCCCCcCH
Confidence 58899999999999999999999878999987 99999999999999999999999999 6665 6778899999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCC-------------CCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHH
Q 007677 104 VFYAVASESVELVKATMKGNEGIATLPDN-------------DGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIEL 169 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~ 169 (593)
||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|+++++ .+..|..|.||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 99999999999999999999987 44443 79999999999999999999999998 88899999999
Q ss_pred HHHHHHcCCHHHH----HHHHHhcchhh-----hccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChH
Q 007677 170 LVQLIETGLYAVA----LQLLHDHRYLA-----TKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQ 239 (593)
Q Consensus 170 L~~A~~~~~~~~v----~~Ll~~~~~~~-----~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~ 239 (593)
||+|+..++.+++ +.|++...... +.+|..|.||||+|+..++ .++++.|+++|......
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~----------~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN----------IVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC----------HHHHHHHHHHHHHC---
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC----------HHHHHHHHhcCccchhh
Confidence 9999999999988 78887743322 5789999999999999999 99999999999876543
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.98 E-value=1.2e-31 Score=252.04 Aligned_cols=200 Identities=20% Similarity=0.186 Sum_probs=151.1
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY 106 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 106 (593)
+..+.||||.|+..|+.+.++.++++.+.+++.. |..|.||||+|+..|+.++|++|+++ +++++.+|..|.||||+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~ 78 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDSPYLY 78 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHH
Confidence 3456778888888888888887777766677765 77778888888888888888888877 67777777778888888
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677 107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLL 186 (593)
Q Consensus 107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 186 (593)
|+..|+.+++++|++.+....+..+..|.||||+|+..|+.+++++|++++
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g----------------------------- 129 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG----------------------------- 129 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC-----------------------------
T ss_pred HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC-----------------------------
Confidence 888888888888775443333677777778888887777777777777665
Q ss_pred HhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHH
Q 007677 187 HDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSI 266 (593)
Q Consensus 187 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~ 266 (593)
+..++.+|..|.||||+|+..+. . ..++.+++++
T Consensus 130 ---~~~~~~~~~~g~t~L~~A~~~~~---------------------------------~----------~~~~~~~v~~ 163 (201)
T 3hra_A 130 ---REDIDFQNDFGYTALIEAVGLRE---------------------------------G----------NQLYQDIVKL 163 (201)
T ss_dssp ---CCCTTCCCTTSCCHHHHHHHSSC---------------------------------C----------SHHHHHHHHH
T ss_pred ---CCCcCCCCCCCCCHHHHHHHhcc---------------------------------c----------hhhHHHHHHH
Confidence 23445667777777777766543 0 0123789999
Q ss_pred HHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhccc
Q 007677 267 LIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIK 306 (593)
Q Consensus 267 Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~ 306 (593)
|+++|+++ +.+|.. |+||||+|+++|+.+++++|+++|
T Consensus 164 Ll~~ga~~-~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 164 LMENGADQ-SIKDNS-GRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHTTCCT-TCCCTT-SCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHCCCCC-CccCCC-CCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999998 788998 999999999999999999999875
No 44
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=4.4e-33 Score=282.68 Aligned_cols=238 Identities=15% Similarity=0.086 Sum_probs=186.7
Q ss_pred CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccc----------------cCCCCCcHHHHHHHcCCHHHHHHHHH
Q 007677 23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVE----------------ITNHGKTALHVAAEANRIDFVKKLLK 86 (593)
Q Consensus 23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~----------------~~~~g~T~Lh~Aa~~g~~~~v~~Ll~ 86 (593)
....|..|.++++ |+.++++.|+++ +.+.+.. ......+.+|.|+..+..++++.|++
T Consensus 45 i~~~~~~g~~~~~-----g~~~~v~~Ll~~-g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~ 118 (327)
T 1sw6_A 45 IMKALPSPVVNDN-----EQKMKLEAFLQR-LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118 (327)
T ss_dssp CEECBCCCCCCCH-----HHHHHHHHHHHH-HHC-------------------------------CHHHHHHHHHHHCTT
T ss_pred cccCCCCCCcccC-----chhHHHHHHHHh-ccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHh
Confidence 3467888999987 999999999987 5443320 01122334688888889999999998
Q ss_pred cCCchhhhc-hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC---HHHHHHHHHhcc--cc
Q 007677 87 RMSAEDLAK-QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR---TEVVEFLYRETK--NS 160 (593)
Q Consensus 87 ~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---~~iv~~Ll~~~~--~~ 160 (593)
. +++++. +|..|+||||+|+..|+.++|++|+++|+++ +.+|..|+||||+|+..|+ .++++.|++.+. .+
T Consensus 119 ~--g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~ 195 (327)
T 1sw6_A 119 T--QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195 (327)
T ss_dssp S--CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred c--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence 8 899999 8999999999999999999999999999997 7999999999999999998 788888888874 77
Q ss_pred cCCcchhHHHHHHHH----cCCHHHHHHHHHhc-------------------chhhhccccCCccHHHHHHhcCCCcccc
Q 007677 161 LKDDDCIELLVQLIE----TGLYAVALQLLHDH-------------------RYLATKRAKNKETALHVLARKNLGDKDR 217 (593)
Q Consensus 161 ~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~~-------------------~~~~~~~d~~g~t~Lh~a~~~~~~~~~~ 217 (593)
..+..|.||||+|+. .|+.++++.|++.. +..++.+|..|.||||.|+.
T Consensus 196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~-------- 267 (327)
T 1sw6_A 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-------- 267 (327)
T ss_dssp EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS--------
T ss_pred CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH--------
Confidence 789999999999999 89999999999873 56677889999999999873
Q ss_pred cchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcC
Q 007677 218 KNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNR 294 (593)
Q Consensus 218 ~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~ 294 (593)
+++|++. +++. +|..|+||||+|++.|+.+++++|+++|+++ +.+|.. |+||||+|+++|
T Consensus 268 --------~~~Ll~~--~~n~-----~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~-G~TpL~~A~~~g 327 (327)
T 1sw6_A 268 --------LKWIIAN--MLNA-----QDSNGDTCLNIAARLGNISIVDALLDYGADP-FIANKS-GLRPVDFGAGLE 327 (327)
T ss_dssp --------HHHHHHH--TTTC-----CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT-TCCCTT-SCCGGGGTCC--
T ss_pred --------HHHHHHh--CCCC-----CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCC-CCCHHHHHHhcC
Confidence 5667766 3443 3478999999999999999999999999998 899999 999999998765
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=4.9e-31 Score=247.84 Aligned_cols=174 Identities=21% Similarity=0.296 Sum_probs=154.4
Q ss_pred HHHHhhhhccccCCCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 007677 10 QLKEDKRKESDEQLPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMS 89 (593)
Q Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~ 89 (593)
.++.+..... ...+..|..|+||||.|+..|+.++++.|++. +.+++.+ +..|.||||+|+..|+.+++++|++..
T Consensus 20 ~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~- 95 (201)
T 3hra_A 20 KVKEILQDTT-YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHA- 95 (201)
T ss_dssp HHHHHHTCTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHS-
T ss_pred HHHHHHHcCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcc-
Confidence 3444444432 23347789999999999999999999999987 8888887 899999999999999999999999765
Q ss_pred chhhhchhcCCChHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCC-----HHHHHHHHHhcc-cccC
Q 007677 90 AEDLAKQNKIGCTAVFYAVASESVELVKATMKGN-EGIATLPDNDGMLPIVRAASLGR-----TEVVEFLYRETK-NSLK 162 (593)
Q Consensus 90 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~-----~~iv~~Ll~~~~-~~~~ 162 (593)
+.+++.+|..|.||||+|+..|+.+++++|+++| .++ +.+|..|.||||+|+..++ .+++++|+++++ .+..
T Consensus 96 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK 174 (201)
T ss_dssp CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc
Confidence 7789999999999999999999999999999999 564 8899999999999999998 999999999998 7888
Q ss_pred CcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677 163 DDDCIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 163 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
|..|.||||.|+..|+.++++.|+++
T Consensus 175 ~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 175 DNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 88999999999999999999988875
No 46
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=3.9e-33 Score=269.42 Aligned_cols=216 Identities=16% Similarity=0.094 Sum_probs=165.3
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCc---cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCC
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYE---GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGC 101 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~---~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 101 (593)
.+|.+|+||||.|+..|+.++++.|++... .+++.+ +..|.||||+|+..|+.++|++|+++ +++++.+|..|.
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~ 79 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGN 79 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCC
Confidence 568999999999999999999999988643 367776 88999999999999999999999998 899999999999
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCC-----CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHH
Q 007677 102 TAVFYAVASESVELVKATMKGNEGI-----ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIE 175 (593)
Q Consensus 102 TpLh~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~ 175 (593)
||||+|+..|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|+++++ .+..+.
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------- 148 (236)
T 1ikn_D 80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP----------- 148 (236)
T ss_dssp CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT-----------
T ss_pred CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-----------
Confidence 9999999999999999999998642 36788899999999999999999999999876 444433
Q ss_pred cCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHH
Q 007677 176 TGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDA 255 (593)
Q Consensus 176 ~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~A 255 (593)
..|.||||+|+..++ .+++++|++.|++++..+ ..|.||||+|
T Consensus 149 ----------------------~~g~tpL~~A~~~~~----------~~~v~~Ll~~ga~~~~~~-----~~g~tpl~~A 191 (236)
T 1ikn_D 149 ----------------------CNGRTALHLAVDLQN----------PDLVSLLLKCGADVNRVT-----YQGYSPYQLT 191 (236)
T ss_dssp ----------------------TTCCCHHHHHHHTTC----------HHHHHHHHTTTCCSCCCC-----TTCCCGGGGC
T ss_pred ----------------------CCCCCHHHHHHHcCC----------HHHHHHHHHcCCCCCccc-----CCCCCHHHHH
Confidence 144455555554444 445555555544444332 5567777777
Q ss_pred HHcCcHHHHHHHHHHCCCcc-ccccCCCCchHHHHHHH
Q 007677 256 ADRGNVQFLSILIREYPDLM-WKADKKDNYTIFHIAVK 292 (593)
Q Consensus 256 a~~g~~~~v~~Ll~~~~~~~-~~~d~~~g~t~Lh~Av~ 292 (593)
+..|+.+++++|+++|++.. ...+.. |.|+.+.+..
T Consensus 192 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~-~~~~~~~~~~ 228 (236)
T 1ikn_D 192 WGRPSTRIQQQLGQLTLENLQMLPESE-DEESYDTESE 228 (236)
T ss_dssp TTSSCHHHHHHHHTTSCGGGSSCCCCC-TTTCCCCC--
T ss_pred HccCchHHHHHHHHcchhhhhcCCccc-hHHHHhhhcc
Confidence 77788888888888888763 356666 8887766544
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=7.6e-31 Score=256.60 Aligned_cols=196 Identities=17% Similarity=0.121 Sum_probs=172.9
Q ss_pred ccchHhHHHHHcCCHHHH----HHHHhhCcccccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhhc---
Q 007677 29 TRRLKLYRAALNGDWAVA----KDIYDKYEGEIGV---EITNHGKTALHVAAEA---NRIDFVKKLLKRMSAEDLAK--- 95 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v----~~Ll~~~~~~~~~---~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~--- 95 (593)
.|+||||.|+..|+.+.+ +.+++. +.+++. ..|..|.||||+|+.. |+.++|++|++. +++++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~-g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~~ 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN-SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI--DKDSGNPKP 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH--HHHTTCSSC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc-CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc--CCcccchhh
Confidence 478999999999999855 444444 788887 2389999999999999 999999999999 776653
Q ss_pred --------hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC-------------CCCHHHHHHHcCCHHHHHHHH
Q 007677 96 --------QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDND-------------GMLPIVRAASLGRTEVVEFLY 154 (593)
Q Consensus 96 --------~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~iv~~Ll 154 (593)
+|..|.||||+|+..|+.+++++|+++|+++ +.++.. |.||||+|+..|+.+++++|+
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 4478999999999999999999999999997 666665 999999999999999999999
Q ss_pred H---hcc-cccCCcchhHHHHHHHH--cCCHH-------HHHHHHHhcchhh-------hccccCCccHHHHHHhcCCCc
Q 007677 155 R---ETK-NSLKDDDCIELLVQLIE--TGLYA-------VALQLLHDHRYLA-------TKRAKNKETALHVLARKNLGD 214 (593)
Q Consensus 155 ~---~~~-~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~a~~~~~~~ 214 (593)
+ +++ .+..|..|.||||+|+. .++.+ +++.|++. +..+ +.+|..|.||||+|+..++
T Consensus 157 ~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~-- 233 (256)
T 2etb_A 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNHQGLTPLKLAAKEGK-- 233 (256)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCTTSCCHHHHHHHTTC--
T ss_pred hccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCCCCCCHHHHHHHhCC--
Confidence 9 777 88899999999999999 78888 99999998 5666 8899999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHhcChH
Q 007677 215 KDRKNKEAETLVESLWEEVILLSKQ 239 (593)
Q Consensus 215 ~~~~~~~~~~~~~~L~~~~~~~~~~ 239 (593)
.++++.|+++|.+....
T Consensus 234 --------~~~v~~Ll~~g~~~~~~ 250 (256)
T 2etb_A 234 --------IEIFRHILQREFSGAAA 250 (256)
T ss_dssp --------HHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHhCCCCCCCc
Confidence 99999999999876543
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.2e-30 Score=257.71 Aligned_cols=201 Identities=18% Similarity=0.162 Sum_probs=170.7
Q ss_pred CccccccchHhHHHHHcCCHHHHHHHHhh---Ccccccc---ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchh--
Q 007677 24 PAETITRRLKLYRAALNGDWAVAKDIYDK---YEGEIGV---EITNHGKTALHVAAEA---NRIDFVKKLLKRMSAED-- 92 (593)
Q Consensus 24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~---~~~~~~~---~~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~-- 92 (593)
+..|..|+||||.|+..|+.+.|+.|++. .+.+++. ..+..|.||||+|+.. |+.++|++|++. +++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~--ga~~~ 84 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV--ARKTD 84 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH--HHHTT
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh--hcccc
Confidence 46799999999999999999999999873 3444431 3378999999999987 999999999998 654
Q ss_pred -----hhc----hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCC--------------CCCCHHHHHHHcCCHHH
Q 007677 93 -----LAK----QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDN--------------DGMLPIVRAASLGRTEV 149 (593)
Q Consensus 93 -----~~~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~i 149 (593)
++. +|..|.||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.++
T Consensus 85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 333 6779999999999999999999999999997 66665 79999999999999999
Q ss_pred HHHHHH---hcc-cccCCcchhHHHHHHHHcCC---------HHHHHHHHHhcchhhh-------ccccCCccHHHHHHh
Q 007677 150 VEFLYR---ETK-NSLKDDDCIELLVQLIETGL---------YAVALQLLHDHRYLAT-------KRAKNKETALHVLAR 209 (593)
Q Consensus 150 v~~Ll~---~~~-~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~~-------~~d~~g~t~Lh~a~~ 209 (593)
+++|++ .++ .+..|..|.||||+|+..++ .++++.|++. +..++ .+|..|.||||+|+.
T Consensus 164 v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~ 242 (273)
T 2pnn_A 164 VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAAS 242 (273)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHH
Confidence 999999 777 88899999999999999988 7899999998 55554 589999999999999
Q ss_pred cCCCcccccchhHHHHHHHHHHHHH-hcCh
Q 007677 210 KNLGDKDRKNKEAETLVESLWEEVI-LLSK 238 (593)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~ 238 (593)
.++ .+++++|+++|+ ++..
T Consensus 243 ~g~----------~~iv~~Ll~~ga~dp~~ 262 (273)
T 2pnn_A 243 SGK----------IGVLAYILQREIHEPEC 262 (273)
T ss_dssp TTC----------HHHHHHHHHHHTC----
T ss_pred hCh----------HHHHHHHHHCCCCCchh
Confidence 999 999999999998 4443
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5e-31 Score=257.88 Aligned_cols=196 Identities=14% Similarity=0.073 Sum_probs=152.0
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCchhhhc----hhcCCChHHHHHHHc---CCHHHHHHHHhcCCCCCc----
Q 007677 64 HGKTALHVAAEANRID----FVKKLLKRMSAEDLAK----QNKIGCTAVFYAVAS---ESVELVKATMKGNEGIAT---- 128 (593)
Q Consensus 64 ~g~T~Lh~Aa~~g~~~----~v~~Ll~~~~~~~~~~----~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~---- 128 (593)
.|+||||.|++.|+.+ ++++|++. +.+++. +|..|+||||+|+.. |+.+++++|++.|++...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 4789999999999997 55677777 788998 899999999999999 999999999999877521
Q ss_pred ------cCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcc-------------hhHHHHHHHHcCCHHHHHHHHHh
Q 007677 129 ------LPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDD-------------CIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 129 ------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
.+|..|.||||+|+..|+.+++++|+++++ .+..+.. |.||||.|+..|+.++++.|++.
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 158 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 234789999999999999999999999998 6666665 99999999999999999999995
Q ss_pred --cchhhhccccCCccHHHHHHh--cCCCcccccchhHHH-------HHHHHHHHHHhcChHHH--HHHhhcchhHHHHH
Q 007677 189 --HRYLATKRAKNKETALHVLAR--KNLGDKDRKNKEAET-------LVESLWEEVILLSKQEI--WELIEQPRELIHDA 255 (593)
Q Consensus 189 --~~~~~~~~d~~g~t~Lh~a~~--~~~~~~~~~~~~~~~-------~~~~L~~~~~~~~~~~~--~~~~~~g~tpLh~A 255 (593)
.+.+++.+|.+|+||||+|+. .++ .+ +++.|++.|++++.... +.+|..|.||||+|
T Consensus 159 ~~~ga~~n~~d~~g~TpLh~A~~~~~~~----------~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 159 PHQPASLEATDSLGNTVLHALVMIADNS----------PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLA 228 (256)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSC----------HHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHH
T ss_pred cccCCCcCccCCCCCCHHHHHHHcccCC----------chhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHH
Confidence 588889999999999999998 554 33 66666666655521000 01123444444444
Q ss_pred HHcCcHHHHHHHHHHC
Q 007677 256 ADRGNVQFLSILIREY 271 (593)
Q Consensus 256 a~~g~~~~v~~Ll~~~ 271 (593)
++.|+.+++++|++++
T Consensus 229 ~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 229 AKEGKIEIFRHILQRE 244 (256)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhCC
Confidence 4444444444444444
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.4e-30 Score=257.28 Aligned_cols=210 Identities=14% Similarity=0.052 Sum_probs=152.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC--Cchhhh----chhcCCChHHHHHHHc---CCHHHHHHHHhcCCCCC-----
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRM--SAEDLA----KQNKIGCTAVFYAVAS---ESVELVKATMKGNEGIA----- 127 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~--~~~~~~----~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~----- 127 (593)
|..|+||||.|++.|+.++|+.|++.. .+.+++ .+|..|+||||+|+.. |+.+++++|+++|++..
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 889999999999999999999999851 134444 4588999999999987 99999999999986521
Q ss_pred -----ccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCc--------------chhHHHHHHHHcCCHHHHHHHHH
Q 007677 128 -----TLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDD--------------DCIELLVQLIETGLYAVALQLLH 187 (593)
Q Consensus 128 -----~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~--------------~g~t~L~~A~~~~~~~~v~~Ll~ 187 (593)
...|..|.||||+|+..|+.+++++|+++++ .+..+. .|.||||.|+..|+.++++.|++
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1256789999999999999999999999998 666665 79999999999999999999999
Q ss_pred h--cchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHH--HHHHhhcchhHHHHHHHcCcHHH
Q 007677 188 D--HRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE--IWELIEQPRELIHDAADRGNVQF 263 (593)
Q Consensus 188 ~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~g~tpLh~Aa~~g~~~~ 263 (593)
. .+.+++.+|.+|+||||+|+..++... .......++++.|++.|++++... ....|..|.||||+|++.|+.++
T Consensus 170 ~~~~gad~~~~d~~g~tpLh~A~~~~~~~~-~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 170 NSWQPADISARDSVGNTVLHALVEVADNTV-DNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSCH-HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred cccCCCCceeeCCCCCcHHHHHHHccCcch-hHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHH
Confidence 4 478889999999999999998775110 000111345555555555544200 00011334444444444444444
Q ss_pred HHHHHHHCC
Q 007677 264 LSILIREYP 272 (593)
Q Consensus 264 v~~Ll~~~~ 272 (593)
+++|+++|+
T Consensus 249 v~~Ll~~ga 257 (273)
T 2pnn_A 249 LAYILQREI 257 (273)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHCCC
Confidence 444444443
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.2e-29 Score=231.01 Aligned_cols=153 Identities=27% Similarity=0.340 Sum_probs=146.7
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcC
Q 007677 32 LKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASE 111 (593)
Q Consensus 32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g 111 (593)
++|+.||+.|+.++|+.|++. +++++.+ |.+|.||||+|+..|+.+++++|++. +++++.+|..|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN-GADVNAS-DSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHC-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcC
Confidence 469999999999999999986 8999987 99999999999999999999999999 8999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhc
Q 007677 112 SVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDH 189 (593)
Q Consensus 112 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 189 (593)
+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.++ .+..|..|.||||+|+..|+.++++.|++++
T Consensus 82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 999999999999997 8899999999999999999999999999999 8889999999999999999999999999873
No 52
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=7.3e-30 Score=250.19 Aligned_cols=198 Identities=18% Similarity=0.147 Sum_probs=172.4
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHh---hCccccccc---cCCCCCcHHHHHH---HcCCHHHHHHHHHcCCchh-----
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYD---KYEGEIGVE---ITNHGKTALHVAA---EANRIDFVKKLLKRMSAED----- 92 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~---~~~~~~~~~---~~~~g~T~Lh~Aa---~~g~~~~v~~Ll~~~~~~~----- 92 (593)
+..++++||.|+..|+.+.++.|++ +.+.+++.. .+..|.||||+|+ +.|+.++|++|++. +++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI--AEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH--HHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh--cccccchH
Confidence 5678999999999999997776666 336666654 1377999999999 77999999999998 543
Q ss_pred ------hhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC--------------CCCCCHHHHHHHcCCHHHHHH
Q 007677 93 ------LAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD--------------NDGMLPIVRAASLGRTEVVEF 152 (593)
Q Consensus 93 ------~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~iv~~ 152 (593)
++.+|..|+||||+|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 4455668999999999999999999999999997 6666 689999999999999999999
Q ss_pred HHH---hcc-cccCCcchhHHHHHHHHcCC---------HHHHHHHHHhcchhh-------hccccCCccHHHHHHhcCC
Q 007677 153 LYR---ETK-NSLKDDDCIELLVQLIETGL---------YAVALQLLHDHRYLA-------TKRAKNKETALHVLARKNL 212 (593)
Q Consensus 153 Ll~---~~~-~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~a~~~~~ 212 (593)
|++ .++ .+..|..|.||||+|+..++ .++++.|++. +..+ +.+|.+|.||||+|+..|+
T Consensus 159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 999 777 88899999999999999888 6899999998 5555 6799999999999999999
Q ss_pred CcccccchhHHHHHHHHHHHHHhcCh
Q 007677 213 GDKDRKNKEAETLVESLWEEVILLSK 238 (593)
Q Consensus 213 ~~~~~~~~~~~~~~~~L~~~~~~~~~ 238 (593)
.++++.|+++|.+...
T Consensus 238 ----------~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 238 ----------IGIFQHIIRREIADAA 253 (260)
T ss_dssp ----------HHHHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHhCCCccc
Confidence 9999999999987654
No 53
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=5.4e-31 Score=270.31 Aligned_cols=261 Identities=11% Similarity=-0.031 Sum_probs=152.6
Q ss_pred cchHhHHHHH-cCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch---hhhchhcCCChHHH
Q 007677 30 RRLKLYRAAL-NGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAE---DLAKQNKIGCTAVF 105 (593)
Q Consensus 30 ~~t~Lh~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~---~~~~~d~~g~TpLh 105 (593)
+.++++.|+. .++.+.++.++++ +.+++||||+|++.|+.++|++|+++ ++ ..+..|..|.||||
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~---------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~--ga~~~~~~~~~~~~~tpL~ 133 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKK---------GIKSEVICFVAAITGCSSALDTLCLL--LTSDEIVKVIQAENYQAFR 133 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHH---------TCCHHHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHc---------CCCcCCHHHHHHHcCCHHHHHHHHHc--CCcHHHHHHhccCCCCHHH
Confidence 3456666655 3566666666654 23345777777777777777777776 33 12233445667777
Q ss_pred HHHHcCCHHHHHHHHhcCCCC--CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-ccc--CCcchhHHHHHHH-HcCCH
Q 007677 106 YAVASESVELVKATMKGNEGI--ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSL--KDDDCIELLVQLI-ETGLY 179 (593)
Q Consensus 106 ~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~--~~~~g~t~L~~A~-~~~~~ 179 (593)
+|++.|+.++|++|+++|++. .+..+.+ .||||+|+..|+.+++++|+++++ .+. .+..|.||||.|+ ..|+.
T Consensus 134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ 212 (376)
T 2aja_A 134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 212 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH
Confidence 777777777777777777541 0122222 677777777777777777777776 333 5666777777777 77777
Q ss_pred HHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcC
Q 007677 180 AVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRG 259 (593)
Q Consensus 180 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g 259 (593)
++++.|++. +. .|.||||+|+..|+ .+++++|++.|.+++.. .++++.|+..|
T Consensus 213 eiv~~Ll~~-ga-------~~~taL~~Aa~~g~----------~evv~lL~~~ga~~~~~---------~~~l~~A~~~g 265 (376)
T 2aja_A 213 NVINFLLDC-PV-------MLAYAEIHEFEYGE----------KYVNPFIARHVNRLKEM---------HDAFKLSNPDG 265 (376)
T ss_dssp HHHHHHTTS-HH-------HHHHHHHCTTTTTT----------TTHHHHHHHHHHHHHHH---------HTTTTTTSSSS
T ss_pred HHHHHHHhC-CC-------ccchHHHHHHHCCC----------HHHHHHHHhcCcccccc---------cHHHHHHHHCC
Confidence 777777764 32 26677777777776 66777777777655432 23444444444
Q ss_pred cH---------------------------HHHHHHHHHCCC-c---cccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677 260 NV---------------------------QFLSILIREYPD-L---MWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI 308 (593)
Q Consensus 260 ~~---------------------------~~v~~Ll~~~~~-~---~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~ 308 (593)
+. +.+++|++.... . ....+.. +.||||+|+..|+.+++++|++.|.
T Consensus 266 ~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~-~~~~L~~A~~~g~~e~v~lLl~~~~- 343 (376)
T 2aja_A 266 VFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-ANELLRLALRLGNQGACALLLSIPS- 343 (376)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC-CCHHHHHHHHHTCTTHHHHHTTSHH-
T ss_pred ChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCC-ccHHHHHHHHcCcHHHHHHHHcChH-
Confidence 43 344444432110 0 0112234 7899999999999999999998753
Q ss_pred cccccccccCCCCchhHhhhhhCCCcccc
Q 007677 309 ADLMVDCTDEKGNNILHLAGELAPQHRLN 337 (593)
Q Consensus 309 ~~~lin~~D~~G~T~LH~A~~~~~~~~~~ 337 (593)
.+|..|+|++.+|-..|..++.+
T Consensus 344 ------v~~~~~~~~~~~~~~~~~~~~~~ 366 (376)
T 2aja_A 344 ------VLALTKANNYYINETGGRLDLRA 366 (376)
T ss_dssp ------HHHSCC-----------------
T ss_pred ------HHHHHHHhccccccccccccHHH
Confidence 57889999999999988876543
No 54
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=5.2e-29 Score=226.70 Aligned_cols=158 Identities=25% Similarity=0.261 Sum_probs=146.5
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Q 007677 67 TALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGR 146 (593)
Q Consensus 67 T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 146 (593)
++|+.||+.|+.++|+.|+++ |+++|.+|..|+||||+|+..|+.++++.|+++|+++ +.+|.+|.||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence 479999999999999999999 8999999999999999999999999999999999997 8899999999999999999
Q ss_pred HHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHH
Q 007677 147 TEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETL 225 (593)
Q Consensus 147 ~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~ 225 (593)
.+++++|+++++ .+..|.+|.||||+|+..|+.++++.|++. +.+++.+|.+|+||||+|+..++ .++
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~----------~~i 151 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHGN----------EEV 151 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC----------HHH
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCC----------HHH
Confidence 999999999999 888999999999999999999999999998 67788999999999999999999 899
Q ss_pred HHHHHHHHHhcCh
Q 007677 226 VESLWEEVILLSK 238 (593)
Q Consensus 226 ~~~L~~~~~~~~~ 238 (593)
+++|+++|++++.
T Consensus 152 v~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 152 VKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHTC------
T ss_pred HHHHHHCCCCcCC
Confidence 9999999998764
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2.6e-29 Score=246.23 Aligned_cols=208 Identities=14% Similarity=0.042 Sum_probs=152.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHH----cCCchhhhchh----cCCChHHHHHH---HcCCHHHHHHHHhcCCCC----
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLK----RMSAEDLAKQN----KIGCTAVFYAV---ASESVELVKATMKGNEGI---- 126 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~----~~~~~~~~~~d----~~g~TpLh~A~---~~g~~~iv~~Ll~~~~~~---- 126 (593)
+..|+|+||.|++.|+.+.|+.|++ . +.+++.++ ..|.||||+|+ +.|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 5678999999999999996555555 6 67777666 67999999999 779999999999987542
Q ss_pred ------CccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCC--------------cchhHHHHHHHHcCCHHHHHHH
Q 007677 127 ------ATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKD--------------DDCIELLVQLIETGLYAVALQL 185 (593)
Q Consensus 127 ------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~--------------~~g~t~L~~A~~~~~~~~v~~L 185 (593)
....|..|.||||+|+..|+.+++++|+++++ .+..+ ..|.||||.|+..|+.++++.|
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 13455689999999999999999999999998 66666 5799999999999999999999
Q ss_pred HHh--cchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHH--HHHHhhcchhHHHHHHHcCcH
Q 007677 186 LHD--HRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQE--IWELIEQPRELIHDAADRGNV 261 (593)
Q Consensus 186 l~~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~g~tpLh~Aa~~g~~ 261 (593)
++. .+.+++.+|.+|+||||+|+..++... .......++++.|++.|++++... ....|..|.||||+|++.|+.
T Consensus 160 l~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~-~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTR-ENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSH-HHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred HhccccCCCCcccCCCCCcHHHHHHHhccCch-hHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence 994 478889999999999999998765100 000111356666666666553200 001123444444444444444
Q ss_pred HHHHHHHHHCC
Q 007677 262 QFLSILIREYP 272 (593)
Q Consensus 262 ~~v~~Ll~~~~ 272 (593)
+++++|+++++
T Consensus 239 ~~v~~Ll~~g~ 249 (260)
T 3jxi_A 239 GIFQHIIRREI 249 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCC
Confidence 44444444443
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.7e-28 Score=223.23 Aligned_cols=169 Identities=17% Similarity=0.129 Sum_probs=150.5
Q ss_pred cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677 30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA 109 (593)
Q Consensus 30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 109 (593)
+.+|||.|+..|+.+.++.++++.+..++.+ +..|.||||+|+..|+.++|++|+++ +++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHH
Confidence 3589999999999999999999876667776 89999999999999999999999999 89999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677 110 SESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 110 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||||+|+..++.++++.|+++
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999999997 8899999999999999999999999999998 888999999999999999999999999998
Q ss_pred cchhhhccccCCccH
Q 007677 189 HRYLATKRAKNKETA 203 (593)
Q Consensus 189 ~~~~~~~~d~~g~t~ 203 (593)
+.....++..|.||
T Consensus 158 -~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 -ILKLFQSNLVPADP 171 (172)
T ss_dssp -HHHHSCC-------
T ss_pred -HHHHhcccCCCCCC
Confidence 45555667777766
No 57
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.1e-27 Score=217.95 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=150.1
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV 108 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 108 (593)
.|.||||.|+..|+.+.++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH
Confidence 478999999999999999999998 6778877 89999999999999999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHH
Q 007677 109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLH 187 (593)
Q Consensus 109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 187 (593)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||+|.|+..|+.++++.|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999997 7899999999999999999999999999998 78899999999999999999999999999
Q ss_pred hcchh
Q 007677 188 DHRYL 192 (593)
Q Consensus 188 ~~~~~ 192 (593)
+....
T Consensus 157 ~~~~~ 161 (167)
T 3v31_A 157 HLLKL 161 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 85443
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=9e-28 Score=223.95 Aligned_cols=159 Identities=18% Similarity=0.192 Sum_probs=151.8
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
.+|..|+||||.|+..|+.++++.|++. +.+++.+ +..|.||||+|+..|+.+++++|++. +++++.+|..|.|||
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPL 105 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHHHH-HCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHh-ccccccc-cccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence 5699999999999999999999999997 7788876 88999999999999999999999999 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677 105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL 183 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 183 (593)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||+|.|+..|+.++++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~ 184 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIK 184 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHH
Confidence 9999999999999999999997 8899999999999999999999999999998 8888999999999999999999999
Q ss_pred HHHHh
Q 007677 184 QLLHD 188 (593)
Q Consensus 184 ~Ll~~ 188 (593)
.|++.
T Consensus 185 ~Ll~~ 189 (192)
T 2rfm_A 185 IFTEV 189 (192)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99987
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=5.1e-28 Score=239.24 Aligned_cols=192 Identities=19% Similarity=0.238 Sum_probs=174.1
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCcc-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCch-hhhchhcCCChHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEG-EIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAE-DLAKQNKIGCTAV 104 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~-~~~~~d~~g~TpL 104 (593)
+....+++|.|+..|+.+.++.+++.... .++.+ |.+|.||||+|+..|+.++|++|++. ++ +++.+|..|.|||
T Consensus 73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL 149 (276)
T 4hbd_A 73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDS--GVCKVDKQNRAGYSPI 149 (276)
T ss_dssp HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--SCCCTTCCCTTSCCHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCCCCCCCCCCHH
Confidence 33456788999999999999998876221 26665 89999999999999999999999999 66 8999999999999
Q ss_pred HHHH-----HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCC
Q 007677 105 FYAV-----ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGL 178 (593)
Q Consensus 105 h~A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~ 178 (593)
|+|+ ..++.++++.|++.|... ...+..|.||||+|+..|+.+++++|++.++ .+..|..|.||||+|+..|+
T Consensus 150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 150 MLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp HHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 9999 678999999999999775 7788999999999999999999999999999 88899999999999999999
Q ss_pred HHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHH
Q 007677 179 YAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEE 232 (593)
Q Consensus 179 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~ 232 (593)
.++++.|++..+.+++.+|.+|.||||+|+..++ .++++.|+++
T Consensus 229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~----------~~iv~~Ll~~ 272 (276)
T 4hbd_A 229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ----------SEIASMLYSR 272 (276)
T ss_dssp HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC----------HHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC----------HHHHHHHHhc
Confidence 9999999996688889999999999999999999 8999998876
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=2.7e-28 Score=241.19 Aligned_cols=192 Identities=16% Similarity=0.219 Sum_probs=143.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH--
Q 007677 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA-- 142 (593)
Q Consensus 65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~-- 142 (593)
+.+++|.|+..|+.+.++.+++...+..+|.+|.+|+||||+|+..|+.+++++|++.|+...+..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 467888999999999999998873223388899999999999999999999999999998334888999999999998
Q ss_pred ---HcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677 143 ---SLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN 219 (593)
Q Consensus 143 ---~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~ 219 (593)
..++.+++++|++.+. .....|..|+||||+|+..++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~---------------------------------~~~~~~~~g~tpLh~A~~~g~------- 195 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGN---------------------------------INAKASQAGQTALMLAVSHGR------- 195 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSC---------------------------------TTCCCTTTCCCHHHHHHHTTC-------
T ss_pred HhhhhhhHHHHHHHHHcCC---------------------------------CccccCCCCCCHHHHHHHcCC-------
Confidence 4566777777776654 223344555566666555555
Q ss_pred hhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHH-HCCCccccccCCCCchHHHHHHHcCchhH
Q 007677 220 KEAETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIR-EYPDLMWKADKKDNYTIFHIAVKNRLEDL 298 (593)
Q Consensus 220 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~~g~t~Lh~Av~~~~~~i 298 (593)
.++++.|++.|++++..+ ..|.||||+|+..|+.+++++|++ .++++ +.+|.. |+||||+|+.+|+.++
T Consensus 196 ---~~~v~~Ll~~gad~n~~d-----~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~-g~TpL~~A~~~g~~~i 265 (276)
T 4hbd_A 196 ---VDVVKALLACEADVNVQD-----DDGSTALMCACEHGHKEIAGLLLAVPSCDI-SLTDRD-GSTALMVALDAGQSEI 265 (276)
T ss_dssp ---HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHTCHHHHHHHHTSTTCCT-TCCCTT-SCCHHHHHHHHTCHHH
T ss_pred ---HHHHHHHHhCCCCCCCCC-----CCCCCHHHHHHHCCCHHHHHHHHhcCCCCC-cCcCCC-CCCHHHHHHHcCCHHH
Confidence 555555555555554433 566777777777788888888888 67777 677887 8888888888888888
Q ss_pred HHHHhccc
Q 007677 299 FKFIYDIK 306 (593)
Q Consensus 299 v~~Ll~~~ 306 (593)
+++|++++
T Consensus 266 v~~Ll~~~ 273 (276)
T 4hbd_A 266 ASMLYSRM 273 (276)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcc
Confidence 88888764
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=3.1e-27 Score=220.35 Aligned_cols=162 Identities=17% Similarity=0.167 Sum_probs=153.0
Q ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCC
Q 007677 57 IGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGML 136 (593)
Q Consensus 57 ~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 136 (593)
++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus 28 ~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 103 (192)
T 2rfm_A 28 RNYR-DSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKT 103 (192)
T ss_dssp HTCC-CTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCC
T ss_pred HhCc-CCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCc
Confidence 4445 88999999999999999999999999 8999999999999999999999999999999999996 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcc
Q 007677 137 PIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDK 215 (593)
Q Consensus 137 pL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~ 215 (593)
|||+|+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +..++.+|..|.||||+|+..++
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~--- 179 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFGR--- 179 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTTC---
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhCc---
Confidence 9999999999999999999998 888999999999999999999999999998 67788899999999999999999
Q ss_pred cccchhHHHHHHHHHHHH
Q 007677 216 DRKNKEAETLVESLWEEV 233 (593)
Q Consensus 216 ~~~~~~~~~~~~~L~~~~ 233 (593)
.++++.|++.+
T Consensus 180 -------~~~v~~Ll~~~ 190 (192)
T 2rfm_A 180 -------QEVIKIFTEVR 190 (192)
T ss_dssp -------HHHHHHHHHHH
T ss_pred -------HHHHHHHHhcc
Confidence 89999998875
No 62
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=5e-27 Score=214.19 Aligned_cols=159 Identities=24% Similarity=0.264 Sum_probs=148.0
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
.....+.++||.|+..|+.+++++|++. +.+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|..|.|||
T Consensus 9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L 84 (169)
T 2y1l_E 9 HHGSDLGKKLLEAARAGRDDEVRILMAN-GADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPL 84 (169)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred cCCCcccchHHHHHHcCCHHHHHHHHHC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHH
Confidence 4467788999999999999999999997 7888877 89999999999999999999999999 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677 105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL 183 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 183 (593)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..|..|.||+|.|+..|+.++++
T Consensus 85 ~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~ 163 (169)
T 2y1l_E 85 RLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163 (169)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHH
Confidence 9999999999999999999997 7899999999999999999999999999998 7888999999999999999999999
Q ss_pred HHHHh
Q 007677 184 QLLHD 188 (593)
Q Consensus 184 ~Ll~~ 188 (593)
.|++.
T Consensus 164 ~L~~~ 168 (169)
T 2y1l_E 164 ILQKL 168 (169)
T ss_dssp HHHTC
T ss_pred HHHHc
Confidence 99875
No 63
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.6e-29 Score=241.16 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=147.3
Q ss_pred HHHHhhCcccccc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCC
Q 007677 47 KDIYDKYEGEIGV--EITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNE 124 (593)
Q Consensus 47 ~~Ll~~~~~~~~~--~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~ 124 (593)
+.|+++ +.+++. ..+.+|.||||+|+..|+.++|++|++. +++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus 2 ~~ll~~-~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga 78 (229)
T 2vge_A 2 RSVLRK-AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGA 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred eehhcc-CCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 455655 344332 2255677889999999999999999988 78888888999999999999999999999999988
Q ss_pred CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccc-cCCccH
Q 007677 125 GIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRA-KNKETA 203 (593)
Q Consensus 125 ~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d-~~g~t~ 203 (593)
++ +.+|..|.||||+|+..|+.+++++|++.++ .++.++ .+|+|
T Consensus 79 ~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga---------------------------------~~~~~~~~~g~t- 123 (229)
T 2vge_A 79 NV-NSPDSHGWTPLHCAASCNDTVICMALVQHGA---------------------------------AIFATTLSDGAT- 123 (229)
T ss_dssp CT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC---------------------------------CTTCCCSSTTCC-
T ss_pred CC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---------------------------------CcccccCCCCCC-
Confidence 86 7788889999999999999888888887764 112222 34444
Q ss_pred HHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHhhcchhHHHHH--HHcCcHHHHHHHHHHCCCccccccCC
Q 007677 204 LHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELIEQPRELIHDA--ADRGNVQFLSILIREYPDLMWKADKK 281 (593)
Q Consensus 204 Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~ 281 (593)
|||+| +..|+.+++++|+++|+++ +..|..
T Consensus 124 -----------------------------------------------pL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~ 155 (229)
T 2vge_A 124 -----------------------------------------------AFEKCDPYREGYADCATYLADVEQSM-GLMNSG 155 (229)
T ss_dssp -----------------------------------------------TGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGG
T ss_pred -----------------------------------------------HHHHHHHHhcChHHHHHHHHHcCCCc-ccccCC
Confidence 44444 5556677777777777776 667777
Q ss_pred CCchHHHHHHHcCchhHHHHHhcccCccccccccccCCCCchhHhhhhhCCCccccc
Q 007677 282 DNYTIFHIAVKNRLEDLFKFIYDIKPIADLMVDCTDEKGNNILHLAGELAPQHRLNV 338 (593)
Q Consensus 282 ~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~lin~~D~~G~T~LH~A~~~~~~~~~~~ 338 (593)
|.||+|.++..+.. ++|++.|++.+ ++.+|..|+||||+|++.|+.++++.
T Consensus 156 -~~~~l~~~~~~~~~---~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 156 -AVYALWDYSAEFGD---ELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp -EEEESSCBCCSSTT---BCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred -chHHHHHHhhcccc---ccCcccccccc--ccccCCCcccHHHHHHHcCCcceeeh
Confidence 88888865554433 57788887754 67899999999999999999887764
No 64
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=5.9e-27 Score=210.53 Aligned_cols=154 Identities=24% Similarity=0.261 Sum_probs=145.0
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV 108 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 108 (593)
++.||||.|+..|+.+.++.|+++.+.+++.. +..|.||||+ +..|+.+++++|+++ +++++.+|..|.||||+|+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAA 76 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH
Confidence 35689999999999999999999866678876 8999999999 999999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHH
Q 007677 109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLH 187 (593)
Q Consensus 109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 187 (593)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. . .+..+..|.||||.|+..|+.++++.|++
T Consensus 77 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 999999999999999996 88999999999999999999999999999 6 78889999999999999999999999987
Q ss_pred h
Q 007677 188 D 188 (593)
Q Consensus 188 ~ 188 (593)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 5
No 65
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.94 E-value=1.7e-29 Score=259.22 Aligned_cols=258 Identities=14% Similarity=0.057 Sum_probs=171.8
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCccccc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchh---hhchhcCCCh
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIG-VEITNHGKTALHVAAEANRIDFVKKLLKRMSAED---LAKQNKIGCT 102 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~-~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~T 102 (593)
+.+++||||.||..|+.++++.|++....... ..++..|.||||+||..|+.++|++|+++ +++ .+..+.+ .|
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~--gad~~~~~i~~~~-~T 165 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAEN-YH 165 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHH-HH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC-CC
Confidence 45567999999999999999999987431111 11255688999999999999999999999 543 2333333 99
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCcc--CCCCCCCHHHHHH-HcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCH
Q 007677 103 AVFYAVASESVELVKATMKGNEGIATL--PDNDGMLPIVRAA-SLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLY 179 (593)
Q Consensus 103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~ 179 (593)
|||+|+..|+.++|++|+++|+++ .. .|..|.||||+|+ ..|+.+++++|++.++ .|.||||.|+..|+.
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTT
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------ccchHHHHHHHCCCH
Confidence 999999999999999999999986 44 7888999999999 9999999999999764 489999999999999
Q ss_pred HHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc--hhHHHHHHHHHHHHHhcChHHH---------------H
Q 007677 180 AVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN--KEAETLVESLWEEVILLSKQEI---------------W 242 (593)
Q Consensus 180 ~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~~~---------------~ 242 (593)
++++.|++. +...+.++ ++++.|+..|+.+..... .....+++.++..+........ .
T Consensus 239 evv~lL~~~-ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g 313 (376)
T 2aja_A 239 YVNPFIARH-VNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTA 313 (376)
T ss_dssp THHHHHHHH-HHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCC
T ss_pred HHHHHHHhc-Cccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccC
Confidence 999999987 44444443 366777777763321100 0111122333322211000000 0
Q ss_pred HHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhc
Q 007677 243 ELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYD 304 (593)
Q Consensus 243 ~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~ 304 (593)
...+.+.||||+|+..|+.+++++|++.+ ..+|.. |+|++.+|-.+|+.++.+.-+.
T Consensus 314 ~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 370 (376)
T 2aja_A 314 TIPGDANELLRLALRLGNQGACALLLSIP----SVLALT-KANNYYINETGGRLDLRAVALE 370 (376)
T ss_dssp SSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSC-C---------------------
T ss_pred CCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHH-HHhccccccccccccHHHHHHH
Confidence 01145679999999999999999999753 456777 9999999999999998876654
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=6e-27 Score=211.85 Aligned_cols=155 Identities=20% Similarity=0.262 Sum_probs=145.9
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV 108 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 108 (593)
...||||.|+..|+.+.++.|++. +.+++.+ +..|.||||+|+. |+.+++++|+++ +++++.+|..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQN-NVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAA 78 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTS-CCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhC-CCCcccc-CccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH
Confidence 456999999999999999999986 7888877 8999999999999 999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHHHHcCCHHHHHHHH
Q 007677 109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQLIETGLYAVALQLL 186 (593)
Q Consensus 109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 186 (593)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||||+|+..|+.++++.|+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 157 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157 (162)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999999999996 8899999999999999999999999999998 4788999999999999999999999999
Q ss_pred Hhc
Q 007677 187 HDH 189 (593)
Q Consensus 187 ~~~ 189 (593)
+++
T Consensus 158 ~~G 160 (162)
T 1ihb_A 158 ANG 160 (162)
T ss_dssp HTC
T ss_pred HhC
Confidence 873
No 67
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2.5e-27 Score=215.11 Aligned_cols=159 Identities=22% Similarity=0.218 Sum_probs=147.3
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
-.|.++.++||.|+..|+.+.++.|++..+.+++.. +..|.||||+|+..|+.+++++|+++ +.+++.+|..|.|||
T Consensus 3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L 79 (165)
T 3twr_A 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPL 79 (165)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHH
Confidence 347889999999999999999999999877777765 88899999999999999999999999 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHH
Q 007677 105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVAL 183 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 183 (593)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..|..|.||+|+|.. ++.++++
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~ 157 (165)
T 3twr_A 80 HNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQD 157 (165)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHH
T ss_pred HHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHH
Confidence 9999999999999999999997 8899999999999999999999999999998 88899999999999877 8899999
Q ss_pred HHHHh
Q 007677 184 QLLHD 188 (593)
Q Consensus 184 ~Ll~~ 188 (593)
.|++.
T Consensus 158 ~L~~~ 162 (165)
T 3twr_A 158 LLRGD 162 (165)
T ss_dssp HHHTC
T ss_pred HHhhc
Confidence 99876
No 68
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=1.3e-26 Score=211.96 Aligned_cols=163 Identities=15% Similarity=0.152 Sum_probs=150.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL 144 (593)
Q Consensus 65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 144 (593)
+.||||.|+..|+.+++++|++.. +..++.+|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence 468999999999999999999994 4458999999999999999999999999999999996 88899999999999999
Q ss_pred CCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677 145 GRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE 223 (593)
Q Consensus 145 g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~ 223 (593)
|+.+++++|++++. .+..+..|.||||.|+..|+.++++.|++. +..++.+|.+|.||||+|+..++ .
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~----------~ 148 (172)
T 3v30_A 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALGY----------R 148 (172)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTC----------H
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhCc----------H
Confidence 99999999999998 888899999999999999999999999998 67778899999999999999999 8
Q ss_pred HHHHHHHHHHHhcChHH
Q 007677 224 TLVESLWEEVILLSKQE 240 (593)
Q Consensus 224 ~~~~~L~~~~~~~~~~~ 240 (593)
++++.|++++.+....+
T Consensus 149 ~~~~~L~~~~~~~~~~~ 165 (172)
T 3v30_A 149 KVQQVIENHILKLFQSN 165 (172)
T ss_dssp HHHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998876554
No 69
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=1.8e-26 Score=209.89 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=151.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS 143 (593)
Q Consensus 64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 143 (593)
.|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 589999999999999999999999 7889999999999999999999999999999999996 7889999999999999
Q ss_pred cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhH
Q 007677 144 LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEA 222 (593)
Q Consensus 144 ~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~ 222 (593)
.|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~---------- 147 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALGY---------- 147 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTC----------
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCc----------
Confidence 999999999999998 888899999999999999999999999997 67778899999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 007677 223 ETLVESLWEEVILLS 237 (593)
Q Consensus 223 ~~~~~~L~~~~~~~~ 237 (593)
.++++.|++++.+..
T Consensus 148 ~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 148 RSVQQVIESHLLKLL 162 (167)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999887643
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2e-26 Score=206.40 Aligned_cols=150 Identities=20% Similarity=0.195 Sum_probs=140.6
Q ss_pred cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677 30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA 109 (593)
Q Consensus 30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 109 (593)
..++||.|+..|+.+.++.|++. +.+++ .+..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~-g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN-GAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH-TCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc-CCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHH
Confidence 46899999999999999999998 55554 378899999999999999999999998 89999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHH
Q 007677 110 SESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQL 185 (593)
Q Consensus 110 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 185 (593)
.|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||+|.|+..|+.++++.|
T Consensus 77 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 99999999999999997 8899999999999999999999999999998 788899999999999999999998875
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=4.9e-27 Score=216.34 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=150.8
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY 106 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 106 (593)
+.++.++||.|+..|+.+.++.|++..+.+++.+ +..|.||||+|+..|+.++|++|++. +++++.+|..|.||||+
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 78 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHL 78 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence 3457789999999999999999999988888877 89999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHH
Q 007677 107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQL 185 (593)
Q Consensus 107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 185 (593)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||++.|+..++.++++.|
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L 157 (179)
T 3f6q_A 79 AASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157 (179)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 8899999999999999999999999999999 888999999999999999999999999
Q ss_pred HHhcchhhhccc
Q 007677 186 LHDHRYLATKRA 197 (593)
Q Consensus 186 l~~~~~~~~~~d 197 (593)
++. +...+..+
T Consensus 158 ~~~-g~~~~~~~ 168 (179)
T 3f6q_A 158 EKM-GQNLNRIP 168 (179)
T ss_dssp HHT-TCCCSCBC
T ss_pred HHh-hcCcccCC
Confidence 988 44444433
No 72
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=9.9e-27 Score=210.42 Aligned_cols=159 Identities=18% Similarity=0.133 Sum_probs=147.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677 63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA 142 (593)
Q Consensus 63 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 142 (593)
....||||.|+..|+.+++++|+++ +.+++.+|..|+||||+|+. |+.+++++|+++|+++ +.++..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 3467999999999999999999998 89999999999999999999 9999999999999996 789999999999999
Q ss_pred HcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677 143 SLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE 221 (593)
Q Consensus 143 ~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~ 221 (593)
..|+.+++++|++++. .+..+..|.||||.|+..|+.++++.|++.+....+.+|..|.||||+|+..++
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~--------- 149 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR--------- 149 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC---------
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC---------
Confidence 9999999999999998 788899999999999999999999999999766678899999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 007677 222 AETLVESLWEEVIL 235 (593)
Q Consensus 222 ~~~~~~~L~~~~~~ 235 (593)
.+++++|+++|++
T Consensus 150 -~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 150 -NEVVSLMQANGAG 162 (162)
T ss_dssp -HHHHHHHHHTC--
T ss_pred -HHHHHHHHHhCCC
Confidence 8899998887753
No 73
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.5e-28 Score=234.24 Aligned_cols=182 Identities=16% Similarity=0.144 Sum_probs=160.0
Q ss_pred CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh
Q 007677 23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT 102 (593)
Q Consensus 23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 102 (593)
.+..+..+.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.++|++|++. +++++.+|..|+|
T Consensus 14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~t 89 (229)
T 2vge_A 14 ARRARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGANYSIVDFLITA--GANVNSPDSHGWT 89 (229)
T ss_dssp CCCTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCC
T ss_pred ccccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCC
Confidence 346678899999999999999999999987 7788887 99999999999999999999999999 8999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH--HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCH
Q 007677 103 AVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA--ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLY 179 (593)
Q Consensus 103 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~ 179 (593)
|||+|+..|+.+++++|+++|+++....+..|.||||+| +..|+.+++++|++.++ .+..+..|.++++.+...+..
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~ 169 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD 169 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc
Confidence 999999999999999999999998433457999999999 99999999999999999 888888999998865544432
Q ss_pred HHHHHHHHhcchh--hhccccCCccHHHHHHhcCC
Q 007677 180 AVALQLLHDHRYL--ATKRAKNKETALHVLARKNL 212 (593)
Q Consensus 180 ~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~a~~~~~ 212 (593)
+.+++. +.. ++.+|.+|+||||+|+..|+
T Consensus 170 ---~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 170 ---ELSFRE-GESVTVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp ---BCCBCT-TCEEEEEESSCTTCSSEEEEEETTE
T ss_pred ---ccCccc-cccccccccCCCcccHHHHHHHcCC
Confidence 344444 444 56789999999999999987
No 74
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=5.3e-26 Score=207.35 Aligned_cols=158 Identities=24% Similarity=0.246 Sum_probs=146.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
...+.|+||.|++.|+.++|++|+++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence 55678999999999999999999999 8999999999999999999999999999999999996 78899999999999
Q ss_pred HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccch
Q 007677 142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNK 220 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 220 (593)
+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|+++ +..++.+|..|.||||+|+..++
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~-------- 158 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNGN-------- 158 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC--------
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhCC--------
Confidence 99999999999999998 788899999999999999999999999998 66778899999999999999998
Q ss_pred hHHHHHHHHHHHH
Q 007677 221 EAETLVESLWEEV 233 (593)
Q Consensus 221 ~~~~~~~~L~~~~ 233 (593)
.+++++|++.|
T Consensus 159 --~~~~~~L~~~G 169 (169)
T 2y1l_E 159 --EDLAEILQKLN 169 (169)
T ss_dssp --HHHHHHHHTC-
T ss_pred --HHHHHHHHHcC
Confidence 88888887643
No 75
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=1e-26 Score=224.86 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=118.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHH
Q 007677 63 NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAA 142 (593)
Q Consensus 63 ~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 142 (593)
..|.||||.|++.|+.+.++.|+++ +++++.. ..|.||||.|+..|+.++++.|++.|+++ +.+|..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAH--GMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhcc--CCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 4588999999999999999999988 7777754 67889999999999999999999998876 788888999999999
Q ss_pred HcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhH
Q 007677 143 SLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEA 222 (593)
Q Consensus 143 ~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~ 222 (593)
..|+.+++++|+++++ +++.+|
T Consensus 79 ~~g~~~~v~~Ll~~ga---------------------------------~~~~~d------------------------- 100 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGV---------------------------------NVNAAD------------------------- 100 (239)
T ss_dssp HHTCHHHHHHHHHHTC---------------------------------CTTCCC-------------------------
T ss_pred HcCCHHHHHHHHHcCC---------------------------------CCCccC-------------------------
Confidence 9999888888887653 122233
Q ss_pred HHHHHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHH--HHcCchhHHH
Q 007677 223 ETLVESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIA--VKNRLEDLFK 300 (593)
Q Consensus 223 ~~~~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~A--v~~~~~~iv~ 300 (593)
..|.||||+|+..|+.+++++|+++|+++ +..|..+++||||+| +..|+.++++
T Consensus 101 -----------------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~ 156 (239)
T 1ycs_B 101 -----------------------SDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQ 156 (239)
T ss_dssp -----------------------TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred -----------------------CCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHH
Confidence 34466666677777788999999999998 677766244999999 7889999999
Q ss_pred HHhcccCccccc-----cccccCCCCchhHhhhhhCC
Q 007677 301 FIYDIKPIADLM-----VDCTDEKGNNILHLAGELAP 332 (593)
Q Consensus 301 ~Ll~~~~~~~~l-----in~~D~~G~T~LH~A~~~~~ 332 (593)
+|++.|++.+.. ....|..|.+++|++.+.|.
T Consensus 157 ~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 157 FLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999988874321 11237889999999999886
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=6.2e-26 Score=205.90 Aligned_cols=159 Identities=21% Similarity=0.267 Sum_probs=145.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
|.+|+||||.|++.|+.++|+.|++.. +.+++..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 677899999999999999999999975 6788889999999999999999999999999999996 88999999999999
Q ss_pred HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccch
Q 007677 142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNK 220 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 220 (593)
+..|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +..++.+|.+|.||||+|.. ++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~~-------- 152 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-GD-------- 152 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-TC--------
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-CC--------
Confidence 99999999999999998 888999999999999999999999999988 67788999999999999776 66
Q ss_pred hHHHHHHHHHHHHH
Q 007677 221 EAETLVESLWEEVI 234 (593)
Q Consensus 221 ~~~~~~~~L~~~~~ 234 (593)
.+++++|.+.|+
T Consensus 153 --~~i~~~L~~~gA 164 (165)
T 3twr_A 153 --TDIQDLLRGDAA 164 (165)
T ss_dssp --HHHHHHHHTC--
T ss_pred --hHHHHHHhhccc
Confidence 688888876653
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=1.4e-26 Score=223.90 Aligned_cols=179 Identities=16% Similarity=0.121 Sum_probs=129.5
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY 106 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 106 (593)
+..|.||||.|+..|+.+.++.|+++ +.+++. ++.|.||||.|+..|+.++|++|++. +++++.+|..|.||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~-g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAH-GMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHN 76 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhcc-CCCccc--CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence 56799999999999999999999986 777774 57899999999999999999999998 78999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchh-HHHHHH--HHcCCHHHH
Q 007677 107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCI-ELLVQL--IETGLYAVA 182 (593)
Q Consensus 107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~-t~L~~A--~~~~~~~~v 182 (593)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|. ||+|.| +..|+.+++
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 99999999999999999997 8899999999999999999999999999999 777776666 999999 788999999
Q ss_pred HHHHHhcchhhhcc---------ccCCccHHHHHHhcCC
Q 007677 183 LQLLHDHRYLATKR---------AKNKETALHVLARKNL 212 (593)
Q Consensus 183 ~~Ll~~~~~~~~~~---------d~~g~t~Lh~a~~~~~ 212 (593)
+.|++. +...+.. +..+.++++++...|.
T Consensus 156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 156 QFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999998 4444433 5668888888777765
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.1e-25 Score=200.30 Aligned_cols=152 Identities=20% Similarity=0.201 Sum_probs=143.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL 144 (593)
Q Consensus 65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 144 (593)
+.||||.|+..|+.+++++|++.. +.+++.+|..|.||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhh-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 578999999999999999999983 67899999999999999 9999999999999999996 88999999999999999
Q ss_pred CCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677 145 GRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE 223 (593)
Q Consensus 145 g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~ 223 (593)
|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. ...+.+|.+|.||||+|+..++ .
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~----------~ 146 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGA----------Q 146 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCC----------H
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCc----------H
Confidence 99999999999998 788899999999999999999999999988 6778899999999999999999 8
Q ss_pred HHHHHHHH
Q 007677 224 TLVESLWE 231 (593)
Q Consensus 224 ~~~~~L~~ 231 (593)
++++.|++
T Consensus 147 ~~v~~Ll~ 154 (156)
T 1bd8_A 147 DLVDILQG 154 (156)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88888875
No 79
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=1.1e-25 Score=207.31 Aligned_cols=164 Identities=16% Similarity=0.100 Sum_probs=146.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
++++.++||.|+..|+.++|++|++.. +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA 79 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 356789999999999999999999986 6789999999999999999999999999999999997 88999999999999
Q ss_pred HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccch
Q 007677 142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNK 220 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 220 (593)
+..|+.+++++|+++++ .+..+..|.||||.|+..++.++++.|++. +..++.+|..|.||||+|+..++
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~~-------- 150 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPLR-------- 150 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHHH--------
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHHH--------
Confidence 99999999999999998 888999999999999999999999999998 67788899999999999988766
Q ss_pred hHHHHHHHHHHHHHhcCh
Q 007677 221 EAETLVESLWEEVILLSK 238 (593)
Q Consensus 221 ~~~~~~~~L~~~~~~~~~ 238 (593)
.++++.|++.|++++.
T Consensus 151 --~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 151 --ELLRERAEKMGQNLNR 166 (179)
T ss_dssp --HHHHHHHHHTTCCCSC
T ss_pred --HHHHHHHHHhhcCccc
Confidence 6777777777766653
No 80
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=3.8e-25 Score=198.07 Aligned_cols=150 Identities=20% Similarity=0.147 Sum_probs=139.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHc
Q 007677 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASL 144 (593)
Q Consensus 65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 144 (593)
..||||.|++.|+.++|++|++. +.+++ .|..|.||||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 46899999999999999999999 66665 5889999999999999999999999999996 78999999999999999
Q ss_pred CCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchhHH
Q 007677 145 GRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAE 223 (593)
Q Consensus 145 g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~ 223 (593)
|+.+++++|+++++ .+..+..|.||||.|+..|+.++++.|++. +..++.+|.+|.||||+|+..++ .
T Consensus 78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~~----------~ 146 (153)
T 1awc_B 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNGN----------E 146 (153)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTC----------H
T ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcCC----------H
Confidence 99999999999998 888899999999999999999999999998 67788899999999999999998 7
Q ss_pred HHHHHH
Q 007677 224 TLVESL 229 (593)
Q Consensus 224 ~~~~~L 229 (593)
+++++|
T Consensus 147 ~i~~~L 152 (153)
T 1awc_B 147 DLAEIL 152 (153)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777665
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.1e-24 Score=190.87 Aligned_cols=130 Identities=14% Similarity=0.159 Sum_probs=116.9
Q ss_pred CCccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcC-CC
Q 007677 23 LPAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKI-GC 101 (593)
Q Consensus 23 ~~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~ 101 (593)
.+..|..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+. |+.+++++|+++ +++++.+|.. |+
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLT 79 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTB
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCC
Confidence 346788899999999999999999999986 7888877 8899999999999 999999999998 8889999999 89
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677 102 TAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK 158 (593)
Q Consensus 102 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 158 (593)
||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999999999886 7888999999999999999999999998874
No 82
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=7.4e-24 Score=185.65 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=117.9
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
.....+.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|..|.|||
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L 84 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPL 84 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHH
Confidence 4467789999999999999999999987 7888877 89999999999999999999999999 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677 105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET 157 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 157 (593)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.|
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999996 889999999999999999999999999864
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.3e-24 Score=195.25 Aligned_cols=141 Identities=15% Similarity=0.155 Sum_probs=111.7
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCCh-H
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCT-A 103 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T-p 103 (593)
..+..|.||||.|+..|+.+++++|++. +.+++.+ +..|.||||+|+ .|+.++|++|+++ +++++.+|..|.| |
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttp 81 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRP 81 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHH
Confidence 4477788999999999999999999986 7788877 888999999985 8999999999988 8889999999998 9
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHH
Q 007677 104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLV 171 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~ 171 (593)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.++.+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 99999999999999999999886 7888999999999999999999999998887 6666777777665
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=1.3e-24 Score=201.06 Aligned_cols=154 Identities=13% Similarity=0.051 Sum_probs=137.7
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCchhhhchhcCCChHH
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRI----DFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
.++++||.|++.|+.+.++.++... ++.+.+..|+||||+|+..|+. +++++|+++ |++++.+|..|+|||
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL 79 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLF 79 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTH
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence 4678999999999999999999874 3334236799999999999985 599999999 899999999999999
Q ss_pred HHHHHcCC------HHHHHHHHhcCCCCCccCCCCCC-CHHHHHHHcCC-----HHHHHHHHH-hcc-cccCCcchhHHH
Q 007677 105 FYAVASES------VELVKATMKGNEGIATLPDNDGM-LPIVRAASLGR-----TEVVEFLYR-ETK-NSLKDDDCIELL 170 (593)
Q Consensus 105 h~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g~-----~~iv~~Ll~-~~~-~~~~~~~g~t~L 170 (593)
|+|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+. .+++++|++ +++ .+..|..|.|||
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH
Confidence 99999987 68999999999997 88999999 99999999553 569999999 888 889999999999
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 007677 171 VQLIETGLYAVALQLLHD 188 (593)
Q Consensus 171 ~~A~~~~~~~~v~~Ll~~ 188 (593)
|+|...|+.++++.|++.
T Consensus 159 ~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 159 EFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999988876
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=1.5e-23 Score=183.75 Aligned_cols=130 Identities=18% Similarity=0.119 Sum_probs=123.1
Q ss_pred ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Q 007677 54 EGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDND 133 (593)
Q Consensus 54 ~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 133 (593)
+.+++.. +..|.||||+|+..|+.++|++|+++ +++++.+|..|.||||+|+. |+.+++++|+++|+++ +.+|..
T Consensus 2 ~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~ 76 (136)
T 1d9s_A 2 SPGIHML-GGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPA 76 (136)
T ss_dssp CCCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTT
T ss_pred CCCccCC-CCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCC
Confidence 4566766 88999999999999999999999999 89999999999999999999 9999999999999997 788888
Q ss_pred -CCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677 134 -GMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 134 -g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..++.++++.|+++
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999998 888999999999999999999999999987
No 86
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=5.1e-23 Score=177.18 Aligned_cols=125 Identities=29% Similarity=0.430 Sum_probs=115.6
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV 108 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 108 (593)
+|+||||.|+..|+.+++++|++. +.+++.+ +..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHH
Confidence 478999999999999999999987 7777776 88999999999999999999999998 8899999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677 109 ASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK 158 (593)
Q Consensus 109 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 158 (593)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999999999999986 7889999999999999999999999998875
No 87
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.4e-23 Score=188.47 Aligned_cols=141 Identities=17% Similarity=0.076 Sum_probs=118.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCC-HHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGML-PIVR 140 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~ 140 (593)
+..|.||||+|+..|+.++|++|+++ +++++.+|..|.||||+|+ .|+.+++++|+++|+++ +.+|..|.| |||+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 67899999999999999999999998 8999999999999999985 99999999999999997 889999999 9999
Q ss_pred HHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHH
Q 007677 141 AASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVL 207 (593)
Q Consensus 141 A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a 207 (593)
|+..|+.+++++|+++++ .+..+..|.||||+|+..|+.++++.|+++ +...+.++..|.||.+-+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C-----------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccC
Confidence 999999999999999998 888999999999999999999999999987 777888999999998743
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=4.8e-23 Score=190.43 Aligned_cols=159 Identities=8% Similarity=0.052 Sum_probs=139.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHHHHHHHcCCH----HHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAVFYAVASESV----ELVKATMKGNEGIATLPDNDGMLPIV 139 (593)
Q Consensus 65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~ 139 (593)
+.++||.|++.|+.+.++.+++. + ++.++ ..|+||||+|+..|+. +++++|+++|+++ +.+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 46799999999999999999876 3 45555 7899999999999985 5999999999997 889999999999
Q ss_pred HHHHcCC------HHHHHHHHHhcc-cccCCcchh-HHHHHHHHcC-----CHHHHHHHHHhcchhhhccccCCccHHHH
Q 007677 140 RAASLGR------TEVVEFLYRETK-NSLKDDDCI-ELLVQLIETG-----LYAVALQLLHDHRYLATKRAKNKETALHV 206 (593)
Q Consensus 140 ~A~~~g~------~~iv~~Ll~~~~-~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 206 (593)
+|+..|+ .+++++|+++|+ .+..|..|. ||||+|+..+ ..++++.|++..+.+++.+|..|.||||+
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~ 160 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence 9999987 588999999999 889999999 9999999844 35688889985588899999999999999
Q ss_pred HHhcCCCcccccchhHHHHHHHHHHHHHhcCh
Q 007677 207 LARKNLGDKDRKNKEAETLVESLWEEVILLSK 238 (593)
Q Consensus 207 a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 238 (593)
|+..++ .++++.|.+...+.+.
T Consensus 161 A~~~~~----------~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 161 VKRCQK----------PIALKMMEDYIKKYNL 182 (186)
T ss_dssp HHTTTC----------HHHHHHHHHHHHHHTC
T ss_pred HHHcCC----------HHHHHHHHHHHHHHhc
Confidence 999998 7888888877655443
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=1.8e-22 Score=176.81 Aligned_cols=124 Identities=23% Similarity=0.250 Sum_probs=117.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
...+.||||+|+..|+.++|++|+++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 56789999999999999999999999 8999999999999999999999999999999999997 78999999999999
Q ss_pred HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677 142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
+..|+.+++++|+++++ .+..|..|.||||.|+..|+.++++.|++.
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999999999998 788899999999999999999999999875
No 90
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=3.7e-23 Score=181.33 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=114.9
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAV 104 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 104 (593)
.+|..|+||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHH
Confidence 4588899999999999999999999986 7888877 88999999999999999999999998 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677 105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET 157 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 157 (593)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..+..+++++|.+..
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 9999999999999999999996 889999999999999998888888776654
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=1.3e-22 Score=187.38 Aligned_cols=141 Identities=20% Similarity=0.181 Sum_probs=128.5
Q ss_pred cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChHH
Q 007677 26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTAV 104 (593)
Q Consensus 26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpL 104 (593)
.+..|.||||.|+..|+.+.++.|++ +.+++.+ |..|.||||+|+..|+.++|++|+++ +++++.+| ..|+|||
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL 114 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTAL 114 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHH
Confidence 46689999999999999999999998 7788887 89999999999999999999999999 89999998 8999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHH
Q 007677 105 FYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQ 184 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 184 (593)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|++.++. ..+.+++++|+..|+.++++.
T Consensus 115 ~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~ 177 (183)
T 3deo_A 115 HMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINV 177 (183)
T ss_dssp HHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHH
Confidence 9999999999999999999997 88999999999999975433 345789999999999999998
Q ss_pred HHHh
Q 007677 185 LLHD 188 (593)
Q Consensus 185 Ll~~ 188 (593)
|.++
T Consensus 178 L~~~ 181 (183)
T 3deo_A 178 LEGQ 181 (183)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8764
No 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.87 E-value=9.1e-22 Score=169.28 Aligned_cols=123 Identities=28% Similarity=0.387 Sum_probs=117.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS 143 (593)
Q Consensus 64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 143 (593)
+|+||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence 589999999999999999999999 8899999999999999999999999999999999996 7889999999999999
Q ss_pred cCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhc
Q 007677 144 LGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDH 189 (593)
Q Consensus 144 ~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 189 (593)
.|+.+++++|++++. .+..+..|.||||.|+..++.++++.|++++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 124 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 999999999999998 7888999999999999999999999999873
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.2e-22 Score=194.87 Aligned_cols=142 Identities=19% Similarity=0.173 Sum_probs=130.2
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchh-cCCChH
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQN-KIGCTA 103 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp 103 (593)
..+..|.||||.|+..|+.++++.|++ +.+++.+ |..|.||||+|+..|+.++|++|+++ +++++.+| ..|.||
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~ 114 (244)
T 3ui2_A 40 DVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCH
Confidence 345689999999999999999999998 7788887 89999999999999999999999999 89999998 889999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHH
Q 007677 104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVAL 183 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 183 (593)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++ ...+.+|||+|+..|+.++++
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~----------------~~~~~~~l~~a~~~g~~~iv~ 177 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK----------------TTPKGNPMQFGRRIGLEKVIN 177 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT----------------TCCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh----------------ccCCCCHHHHHHHcChHHHHH
Confidence 99999999999999999999997 8899999999999986332 256789999999999999999
Q ss_pred HHHHh
Q 007677 184 QLLHD 188 (593)
Q Consensus 184 ~Ll~~ 188 (593)
.|++.
T Consensus 178 ~L~~~ 182 (244)
T 3ui2_A 178 VLEGQ 182 (244)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99986
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=6.4e-22 Score=197.50 Aligned_cols=122 Identities=19% Similarity=0.254 Sum_probs=60.0
Q ss_pred hHhHHHHHcCCHHHHHHHHhhCccccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677 32 LKLYRAALNGDWAVAKDIYDKYEGEIGVE-----ITNHGKTALHVAAEA---NRIDFVKKLLKRMSAEDLAKQNKIGCTA 103 (593)
Q Consensus 32 t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 103 (593)
++||.|+..|+.+.++.|++. +.+++.. .+..|.||||+|+.. |+.++|++|++. +++++.+|..|+||
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~Tp 229 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTA 229 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCCCH
T ss_pred HHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCCCH
Confidence 445555555555555544433 3344331 144445555555544 445555555554 44455555555555
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhc
Q 007677 104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRET 157 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 157 (593)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g 282 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQ 282 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence 55555555555555555555543 444555555555555555555555554444
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=3.2e-22 Score=171.84 Aligned_cols=114 Identities=22% Similarity=0.277 Sum_probs=100.1
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY 106 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 106 (593)
+..|.||||.|+..|+.+.++.|++. +.+++.+ |..|.||||+|+..|+.+++++|++. +++++.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence 55678999999999999999999986 6778876 88999999999999999999999988 88999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcC
Q 007677 107 AVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLG 145 (593)
Q Consensus 107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 145 (593)
|+..|+.+++++|+++|+++ +.+|..|.||||+|...+
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHH
Confidence 99999999999999999986 788999999999994433
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=2.2e-22 Score=176.44 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=113.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
|..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDA 83 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHH
Confidence 88999999999999999999999998 8999999999999999999999999999999999996 88999999999999
Q ss_pred HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677 142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
+..|+.+++++|+++++ .+..|..|.||+|+|+..+..++++.+.+.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 99999999999999998 788899999999999887777666555443
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=4.3e-22 Score=189.95 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=104.4
Q ss_pred cccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHH
Q 007677 26 ETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVF 105 (593)
Q Consensus 26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 105 (593)
.+..|.||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.++|++|++.. +++++.+|..|+||||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQP-NIELNQQNKLGDTALH 145 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTST-TCCCCCCCTTSCCHHH
T ss_pred cccccccccccccccCcHHHHHHHHhC-CCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCC-CCCccccCCCCCCHHH
Confidence 356678889999999999888888885 7778776 788889999999999999999888875 6788888888899999
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677 106 YAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK 158 (593)
Q Consensus 106 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 158 (593)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++++.|++.++
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 999999999999999888886 7888888999999988888888888888776
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=9.5e-22 Score=190.42 Aligned_cols=171 Identities=18% Similarity=0.156 Sum_probs=141.5
Q ss_pred cccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHH
Q 007677 28 ITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYA 107 (593)
Q Consensus 28 ~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 107 (593)
..+.+++..++..|+.+.+..+... +.+ .+..|+||||+|++.|+.++|+.|++ +.+++.+|..|.||||+|
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~-~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A 84 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYI-AAD----VVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFV 84 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGS-CHH----HHHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHH
T ss_pred CCCccHHHHHHHcCCCccccccccc-ccc----cccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHH
Confidence 3455666666666766555433222 222 24578999999999999999999998 478999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHH
Q 007677 108 VASESVELVKATMKGNEGIATLPD-NDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQL 185 (593)
Q Consensus 108 ~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 185 (593)
+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++++ .+..|..|.||||.|+..+
T Consensus 85 ~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~-------- 155 (244)
T 3ui2_A 85 AGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL-------- 155 (244)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH--------
T ss_pred HHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH--------
Confidence 9999999999999999997 5555 889999999999999999999999998 8889999999999998532
Q ss_pred HHhcchhhhccccCCccHHHHHHhcCCCcccccchhHHHHHHHHHHHHHh
Q 007677 186 LHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKEAETLVESLWEEVIL 235 (593)
Q Consensus 186 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 235 (593)
....+.||||+|+..++ .++++.|.+.+.+
T Consensus 156 ----------~~~~~~~~l~~a~~~g~----------~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 156 ----------KTTPKGNPMQFGRRIGL----------EKVINVLEGQVFE 185 (244)
T ss_dssp ----------TTCCCSSHHHHHHHHHH----------HHHHHHHHHHHEE
T ss_pred ----------hccCCCCHHHHHHHcCh----------HHHHHHHHHhccc
Confidence 23678999999999987 7788888776544
No 99
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=9.7e-22 Score=181.52 Aligned_cols=138 Identities=21% Similarity=0.218 Sum_probs=123.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPD-NDGMLPIVR 140 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~ 140 (593)
+..|+||||+|+..|+.++++.|++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence 5578999999999999999999998 5789999999999999999999999999999999997 5566 899999999
Q ss_pred HHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccc
Q 007677 141 AASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKN 219 (593)
Q Consensus 141 A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~ 219 (593)
|+..|+.+++++|+++++ .+..|..|.||||+|+..+ ....+.++|++++..+.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~------------------~~~~~~~~l~~a~~~~~------- 171 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIGL------- 171 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH------------------HTCCCCSHHHHHHHHHH-------
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc------------------cCcccccHHHHHHHcCH-------
Confidence 999999999999999998 8889999999999998643 22467899999999887
Q ss_pred hhHHHHHHHHHH
Q 007677 220 KEAETLVESLWE 231 (593)
Q Consensus 220 ~~~~~~~~~L~~ 231 (593)
.++++.|.+
T Consensus 172 ---~~i~~~L~~ 180 (183)
T 3deo_A 172 ---EKVINVLEG 180 (183)
T ss_dssp ---HHHHHHHHT
T ss_pred ---HHHHHHHHH
Confidence 777777754
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.84 E-value=1.5e-21 Score=167.70 Aligned_cols=110 Identities=18% Similarity=0.281 Sum_probs=101.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
+..|+||||+|+..|+.+++++|++. +.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 56789999999999999999999998 8899999999999999999999999999999999996 88999999999999
Q ss_pred HHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHH
Q 007677 142 ASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLI 174 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~ 174 (593)
+..|+.+++++|+++++ .+..+..|.||+|+|.
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 99999999999999988 7778888899998884
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=187.83 Aligned_cols=138 Identities=14% Similarity=0.066 Sum_probs=121.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhhc------hhcCCChHHHHHHHc---CCHHHHHHHHhcCCCCCccCCCCCC
Q 007677 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAK------QNKIGCTAVFYAVAS---ESVELVKATMKGNEGIATLPDNDGM 135 (593)
Q Consensus 65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~------~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~ 135 (593)
+.++||.|+..|+.+.|+.|++. +.+++. .|..|+||||+|+.. |+.+++++|+++|+++ +.+|..|.
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 227 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCC
Confidence 34679999999999999999988 788887 689999999999997 8999999999999997 88999999
Q ss_pred CHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhcCC
Q 007677 136 LPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARKNL 212 (593)
Q Consensus 136 tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~ 212 (593)
||||+|+..|+.+++++|+++++ .+..|..|.||||+|+..++.++++.|++... ..|.||||+|+..|+
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga-------~~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQA-------GTFAFPLHVDYSWVI 298 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH-------HTTSSCCC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-------CCCCChhHHHHhcCC
Confidence 99999999999999999999999 88899999999999999999999999998732 268999999998876
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=3.6e-21 Score=183.47 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=114.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKG-NEGIATLPDNDGMLPIVR 140 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~ 140 (593)
+..|.||||+|+..|+.++|++|++. +++++.+|..|.||||+|+..|+.+++++|++. |+++ +.+|..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence 56789999999999999999999998 899999999999999999999999999999999 8886 8899999999999
Q ss_pred HHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677 141 AASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 141 A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
|+..|+.+++++|+++++ .+..+..|.||||+|+..+..++++.++..
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~ 195 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence 999999999999999998 888999999999999999999999998887
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=3.6e-20 Score=189.10 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=112.9
Q ss_pred ccccchHhHHHHHc-CCHHHHHHHHhhCccccccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677 27 TITRRLKLYRAALN-GDWAVAKDIYDKYEGEIGVEIT--NHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA 103 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~--~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 103 (593)
+..+.|+||.|+.. |+.+.++.|++. +.+++.. + ..|.||||+|+..|+.++|++|+++ +++++.+|..|+||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGP 271 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCH
Confidence 34566899999999 999999999875 7888876 5 7899999999999999999999998 88999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677 104 VFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK 158 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 158 (593)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+.
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 99999999999999999999996 8889999999999999999999999988765
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=4.2e-20 Score=150.03 Aligned_cols=92 Identities=30% Similarity=0.473 Sum_probs=72.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHH
Q 007677 64 HGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAAS 143 (593)
Q Consensus 64 ~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 143 (593)
+|+||||+|+..|+.+++++|++. +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 367888888888888888888887 7778888888888888888888888888888888775 6777788888888888
Q ss_pred cCCHHHHHHHHHhcc
Q 007677 144 LGRTEVVEFLYRETK 158 (593)
Q Consensus 144 ~g~~~iv~~Ll~~~~ 158 (593)
.|+.+++++|+++++
T Consensus 78 ~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 888888888887764
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=7.9e-20 Score=180.23 Aligned_cols=126 Identities=22% Similarity=0.314 Sum_probs=112.1
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCchhhhchhcCC
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVE-----ITNHGKTALHVAAEA---NRIDFVKKLLKRMSAEDLAKQNKIG 100 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~g~T~Lh~Aa~~---g~~~~v~~Ll~~~~~~~~~~~d~~g 100 (593)
...++|+.|+..|+.+.++.+++. +.+++.. .+..|.||||+|+.. |+.++|++|+++ +++++.+|..|
T Consensus 129 ~~l~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g 205 (278)
T 1dcq_A 129 AKLHSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKG 205 (278)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTC
T ss_pred hhhhhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCC
Confidence 345789999999999999998887 5554332 277899999999999 899999999999 89999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc
Q 007677 101 CTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK 158 (593)
Q Consensus 101 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 158 (593)
+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 99999999999999999999999996 8899999999999999999999999999887
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.81 E-value=2.2e-19 Score=192.26 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=115.0
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccc-----cCCCCCcHHHHHHH---cCCHHHHHHHHHcCCchhhhchhcCC
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVE-----ITNHGKTALHVAAE---ANRIDFVKKLLKRMSAEDLAKQNKIG 100 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~g~T~Lh~Aa~---~g~~~~v~~Ll~~~~~~~~~~~d~~g 100 (593)
...+.||.|+..|+.+.++.|++. +.+++.+ .+..|.||||+|++ .|+.++|++|+++ |+++|.+|..|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g 207 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADG 207 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSS
T ss_pred ccHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCC
Confidence 344789999999999999999987 6777654 26789999999976 8999999999999 89999999999
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHH
Q 007677 101 CTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLI 174 (593)
Q Consensus 101 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~ 174 (593)
+||||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++ .+ .+|+|.+.
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~------~~~~h~~~ 275 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTF------AFPLHVDY 275 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----------------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC------CCcceeec
Confidence 99999999999999999999999997 8899999999999999999999999999987 22 25677654
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=1.5e-19 Score=146.80 Aligned_cols=93 Identities=28% Similarity=0.408 Sum_probs=87.2
Q ss_pred ccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHH
Q 007677 29 TRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAV 108 (593)
Q Consensus 29 ~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 108 (593)
+|+||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence 478999999999999999999986 8889887 89999999999999999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCC
Q 007677 109 ASESVELVKATMKGNEG 125 (593)
Q Consensus 109 ~~g~~~iv~~Ll~~~~~ 125 (593)
..|+.+++++|+++|++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999999874
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=5.4e-19 Score=174.25 Aligned_cols=192 Identities=17% Similarity=0.117 Sum_probs=133.7
Q ss_pred hhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc--cccCCcchhHHHHHH
Q 007677 96 QNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK--NSLKDDDCIELLVQL 173 (593)
Q Consensus 96 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~--~~~~~~~g~t~L~~A 173 (593)
.|..+.++++.+...|+..+.+++...-+.....+-..+.... .....-..+++..... .........++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 4555667777777777766655554332221000101111111 1111111222222222 122233445678888
Q ss_pred HHcCCHHHHHHHHHhcchh-----hhccccCCccHHHHHHhc---CCCcccccchhHHHHHHHHHHHHHhcChHHHHHHh
Q 007677 174 IETGLYAVALQLLHDHRYL-----ATKRAKNKETALHVLARK---NLGDKDRKNKEAETLVESLWEEVILLSKQEIWELI 245 (593)
Q Consensus 174 ~~~~~~~~v~~Ll~~~~~~-----~~~~d~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 245 (593)
+..++.+.+..++..+.+. .+..|..|+||||+|+.. ++ .+++++|++.|++++..+
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~----------~~~v~~Ll~~ga~in~~d----- 202 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS----------LHIVDFLVQNSGNLDKQT----- 202 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT----------HHHHHHHHHHCSCTTCCC-----
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccch----------HHHHHHHHHCCCCccccC-----
Confidence 8888888888777774332 344588899999999998 66 899999999999888655
Q ss_pred hcchhHHHHHHHcCcHHHHHHHHHHCCCccccccCCCCchHHHHHHHcCchhHHHHHhcccCc
Q 007677 246 EQPRELIHDAADRGNVQFLSILIREYPDLMWKADKKDNYTIFHIAVKNRLEDLFKFIYDIKPI 308 (593)
Q Consensus 246 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~ 308 (593)
..|.||||+|+..|+.+++++|+++|+++ +.+|.. |+||||+|+..|+.+++++|++.|++
T Consensus 203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 203 GKGSTALHYCCLTDNAECLKLLLRGKASI-EIANES-GETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT-SCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCC-CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 78999999999999999999999999998 899999 99999999999999999999998764
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.77 E-value=6.7e-19 Score=179.73 Aligned_cols=145 Identities=18% Similarity=0.175 Sum_probs=117.6
Q ss_pred CCCCcHHHHHHHc-CCHHHHHHHHHcCCchhhhchh--cCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHH
Q 007677 63 NHGKTALHVAAEA-NRIDFVKKLLKRMSAEDLAKQN--KIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIV 139 (593)
Q Consensus 63 ~~g~T~Lh~Aa~~-g~~~~v~~Ll~~~~~~~~~~~d--~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 139 (593)
..+.|+||.|+.. |+.++|+.|+++ +++++..| ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh 273 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH 273 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 3456899999999 999999999998 89999888 89999999999999999999999999997 789999999999
Q ss_pred HHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcch--hhhccccCCccHHHHHHhc
Q 007677 140 RAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRY--LATKRAKNKETALHVLARK 210 (593)
Q Consensus 140 ~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~--~~~~~d~~g~t~Lh~a~~~ 210 (593)
+|+..|+.+++++|+++++ .+..|..|.||||+|+..++.++++.|++.... .....+..+.|+++.+...
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 9999999999999999999 888999999999999999999999999987322 2223455677877765544
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=3e-19 Score=151.15 Aligned_cols=106 Identities=24% Similarity=0.271 Sum_probs=55.2
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFY 106 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 106 (593)
|.+|+||||.|+..|+.++++.|++. +.+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|..|.||||+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHL 81 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence 44555555555555555555555543 4444443 45555555555555555555555555 45555555555555555
Q ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Q 007677 107 AVASESVELVKATMKGNEGIATLPDNDGMLP 137 (593)
Q Consensus 107 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 137 (593)
|+..|+.+++++|+++|+++ +.++..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 55555555555555555554 4444445444
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=4.3e-19 Score=150.18 Aligned_cols=105 Identities=26% Similarity=0.322 Sum_probs=95.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
|.+|+||||+|+..|+.+++++|+++ +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA 82 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence 88999999999999999999999999 8899999999999999999999999999999999997 78899999999999
Q ss_pred HHcCCHHHHHHHHHhcc-cccCCcchhHH
Q 007677 142 ASLGRTEVVEFLYRETK-NSLKDDDCIEL 169 (593)
Q Consensus 142 ~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~ 169 (593)
+..|+.+++++|+++++ .+..+..|.+|
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 99999999999999987 55555555444
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=4.9e-18 Score=181.83 Aligned_cols=136 Identities=14% Similarity=0.059 Sum_probs=115.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCchhhhch------hcCCChHHHHHHH---cCCHHHHHHHHhcCCCCCccCCCCCC
Q 007677 65 GKTALHVAAEANRIDFVKKLLKRMSAEDLAKQ------NKIGCTAVFYAVA---SESVELVKATMKGNEGIATLPDNDGM 135 (593)
Q Consensus 65 g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~------d~~g~TpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~g~ 135 (593)
..+.||.|+..|+.+.|+.|++. +++++.+ |..|.||||+||+ .|+.+++++|+++|+++ +.+|..|.
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCC
Confidence 34789999999999999999999 8888877 8899999999976 89999999999999997 88999999
Q ss_pred CHHHHHHHcCCHHHHHHHHHhcc-cccCCcchhHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccHHHHHHhc
Q 007677 136 LPIVRAASLGRTEVVEFLYRETK-NSLKDDDCIELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETALHVLARK 210 (593)
Q Consensus 136 tpL~~A~~~g~~~iv~~Ll~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~ 210 (593)
||||+|+..|+.+++++|+++|+ .+..|..|.||||+|+..|+.++++.|++.+ ...+ .+|+|.+...
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g-a~~~------~~~~h~~~~~ 277 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ-AGTF------AFPLHVDYSW 277 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC-C-------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC-CCCC------CCcceeeccc
Confidence 99999999999999999999999 8889999999999999999999999999983 3332 2688876543
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=2.1e-17 Score=138.54 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=67.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q 007677 62 TNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVASESVELVKATMKGNEGIATLPDNDGMLPIVRA 141 (593)
Q Consensus 62 ~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 141 (593)
+.+|.||||+|+..|+.+++++|++. +++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS 97 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence 66777777777777777777777777 6777777777777777777777777777777777775 66777777777777
Q ss_pred HHcCCHHHHHHH
Q 007677 142 ASLGRTEVVEFL 153 (593)
Q Consensus 142 ~~~g~~~iv~~L 153 (593)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 777777777765
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=1.2e-16 Score=133.95 Aligned_cols=92 Identities=24% Similarity=0.307 Sum_probs=84.4
Q ss_pred CccccccchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChH
Q 007677 24 PAETITRRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTA 103 (593)
Q Consensus 24 ~~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 103 (593)
...|.+|.|+||.|+..|+.++++.|++. +.+++.+ |..|+||||+|+..|+.+++++|+++ +++++.+|..|.||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTA 93 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcH
Confidence 46688999999999999999999999986 8888887 89999999999999999999999999 89999999999999
Q ss_pred HHHHHHcCCHHHHHHH
Q 007677 104 VFYAVASESVELVKAT 119 (593)
Q Consensus 104 Lh~A~~~g~~~iv~~L 119 (593)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999987
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=82.09 E-value=20 Score=35.17 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=13.1
Q ss_pred CCcchhHHHHHHHHcCCHHHHHHHHH
Q 007677 162 KDDDCIELLVQLIETGLYAVALQLLH 187 (593)
Q Consensus 162 ~~~~g~t~L~~A~~~~~~~~v~~Ll~ 187 (593)
.|..|.-.+..++..+..+....+++
T Consensus 213 ~d~~Gn~ViQ~~l~~~~~~~~~~i~~ 238 (351)
T 3gvo_A 213 QDQYGNYVIQHVLEHGRPEDKSKIVS 238 (351)
T ss_dssp TSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhCchhhHHHHHH
Confidence 45555555555555555444444443
No 116
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=81.17 E-value=9.4 Score=37.97 Aligned_cols=186 Identities=10% Similarity=0.075 Sum_probs=107.5
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCc-cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhh-chhcCCChHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYE-GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLA-KQNKIGCTAV 104 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~TpL 104 (593)
|.+|.-.+..+...++.+..+.++++-. ..+....|..|+..+......+..+..+.+++...|.-.. ..+..|.-.+
T Consensus 39 d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVl 118 (369)
T 3k49_A 39 DQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVI 118 (369)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHH
T ss_pred CCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHH
Confidence 5555566677777788777776666522 1222234889999999999999888777777653222111 2455666666
Q ss_pred HHHHHcCCHHHHHHHHhc-CCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc----cccCCcchhHHHHHHHHcCC
Q 007677 105 FYAVASESVELVKATMKG-NEG-IATLPDNDGMLPIVRAASLGRTEVVEFLYRETK----NSLKDDDCIELLVQLIETGL 178 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~-~~~-~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~g~t~L~~A~~~~~ 178 (593)
..+......+-...+++. .+. ..-..|.+|...+......+..+..+.+++.-. .-..++.|...+..+...+.
T Consensus 119 Qk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~ 198 (369)
T 3k49_A 119 QKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGS 198 (369)
T ss_dssp HHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCC
Confidence 666666665544444432 111 112355566555555555544333333332221 22357788888888888877
Q ss_pred HHHHHHHHHhcc--hhhhccccCCccHHHHHHhcCC
Q 007677 179 YAVALQLLHDHR--YLATKRAKNKETALHVLARKNL 212 (593)
Q Consensus 179 ~~~v~~Ll~~~~--~~~~~~d~~g~t~Lh~a~~~~~ 212 (593)
.+.-+.+++.-. ...-..|..|.-.+..+...+.
T Consensus 199 ~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~ 234 (369)
T 3k49_A 199 SEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQ 234 (369)
T ss_dssp HHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCC
Confidence 766666665421 1122467777777777666654
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=77.96 E-value=5.2 Score=39.53 Aligned_cols=185 Identities=11% Similarity=0.091 Sum_probs=92.7
Q ss_pred ccccchHhHHHHHcCCHHHHHHHHhhCc-cccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhh-chhcCCChHH
Q 007677 27 TITRRLKLYRAALNGDWAVAKDIYDKYE-GEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLA-KQNKIGCTAV 104 (593)
Q Consensus 27 ~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~TpL 104 (593)
|.+|.-.|......++.+..+.++++-. ..+....|..|+..+.-....|..+....+++...|.-+. ..|..|.-.+
T Consensus 34 dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvv 113 (351)
T 3gvo_A 34 DQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVI 113 (351)
T ss_dssp SHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHH
T ss_pred CCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHH
Confidence 3444445555666677666666655421 1122234888888888888888888777777653222222 3566677777
Q ss_pred HHHHHcCCHHHHHHHHhcC-CC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc----cccCCcchhHHHHHHHHcCC
Q 007677 105 FYAVASESVELVKATMKGN-EG-IATLPDNDGMLPIVRAASLGRTEVVEFLYRETK----NSLKDDDCIELLVQLIETGL 178 (593)
Q Consensus 105 h~A~~~g~~~iv~~Ll~~~-~~-~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~g~t~L~~A~~~~~ 178 (593)
..+......+-...+++.= +. .....|..|...+......+..+..+.+++.-. .-..+..|...+..+.....
T Consensus 114 Qk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~ 193 (351)
T 3gvo_A 114 QKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCT 193 (351)
T ss_dssp HHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSC
T ss_pred HHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCC
Confidence 7777766665544444321 11 112345555554444444444443333333222 11244556555555555544
Q ss_pred HHHHHHHHHhc--chhhhccccCCccHHHHHHhcC
Q 007677 179 YAVALQLLHDH--RYLATKRAKNKETALHVLARKN 211 (593)
Q Consensus 179 ~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~a~~~~ 211 (593)
.+-...+++.- ....-..|..|.-.+......+
T Consensus 194 ~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~ 228 (351)
T 3gvo_A 194 AEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHG 228 (351)
T ss_dssp HHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhC
Confidence 43333333220 1111234555554444444443
No 118
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=45.03 E-value=87 Score=30.74 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=82.7
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCcccc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchh-hhchhcCCCh
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEGEI-GVEITNHGKTALHVAAEANRIDFVKKLLKRMSAED-LAKQNKIGCT 102 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~-~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~-~~~~d~~g~T 102 (593)
..|..|+..+......|+.+..+.+++.....+ ....+..|.-.+..+......+-...+++.-.+.. -=.+|.+|+.
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ 152 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNH 152 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHH
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccch
Confidence 458888888888888888887777776532221 11235667767777776666655555554421211 1235667776
Q ss_pred HHHHHHHcCCHH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHhcc----cccCCcchhHHHHHHH
Q 007677 103 AVFYAVASESVE----LVKATMKGNEGIATLPDNDGMLPIVRAASLGRTEVVEFLYRETK----NSLKDDDCIELLVQLI 174 (593)
Q Consensus 103 pLh~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~----~~~~~~~g~t~L~~A~ 174 (593)
.+......+..+ +++.+..+-.. -..+..|...+.-....+..+--+.+++.-. .-..|..|.-.+..+.
T Consensus 153 ViQ~~l~~~~~~~~~~i~~~~~~~~~~--ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l 230 (369)
T 3k49_A 153 VIQKAIETIPIEKLPFILSSLTGHIYH--LSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVL 230 (369)
T ss_dssp HHHHHHHHSCGGGCHHHHHHHTTTHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHH--HhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 666666655433 33333221111 1345556555655555555544444443221 2225666666666666
Q ss_pred HcCC
Q 007677 175 ETGL 178 (593)
Q Consensus 175 ~~~~ 178 (593)
..+.
T Consensus 231 ~~~~ 234 (369)
T 3k49_A 231 QQDQ 234 (369)
T ss_dssp TCCT
T ss_pred hcCC
Confidence 5543
No 119
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=42.95 E-value=39 Score=35.03 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=53.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHHhcchhhhccccCCccH-HHHHHhcCCCcccccchhHHHHHHHHHHHHHhcChHHHHHHh
Q 007677 167 IELLVQLIETGLYAVALQLLHDHRYLATKRAKNKETA-LHVLARKNLGDKDRKNKEAETLVESLWEEVILLSKQEIWELI 245 (593)
Q Consensus 167 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~a~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 245 (593)
.+.+...+..|..+.+..+++.....--..|..-.+. +...++.|. ...+.++.+.+.+.|..++....
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~------~~~A~~l~~~M~~~G~~Pd~~ty---- 178 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD------ADKAYEVDAHMVESEVVPEEPEL---- 178 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTTCCCCHHHH----
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC------HHHHHHHHHHHHhcCCCCCHHHH----
Confidence 4556677778888877777765221111112222233 333445554 34566777777777777776653
Q ss_pred hcchhHHHHHHHcCcHHHHHHHHHH
Q 007677 246 EQPRELIHDAADRGNVQFLSILIRE 270 (593)
Q Consensus 246 ~~g~tpLh~Aa~~g~~~~v~~Ll~~ 270 (593)
.+.+...++.|+.+-+..+++.
T Consensus 179 ---~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 179 ---AALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---HHHHHHHhhCCCHHHHHHHHHH
Confidence 5666777888888766666554
No 120
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=44.33 E-value=6.7 Score=21.29 Aligned_cols=9 Identities=67% Similarity=1.106 Sum_probs=7.8
Q ss_pred cccccccCC
Q 007677 584 PLTSSCSTN 592 (593)
Q Consensus 584 ~~~~~~~~~ 592 (593)
|+.|||-+|
T Consensus 2 plgsscr~n 10 (26)
T 2yka_B 2 PLGSSCKTS 10 (26)
Confidence 889999876
No 121
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=37.99 E-value=29 Score=33.63 Aligned_cols=63 Identities=11% Similarity=-0.000 Sum_probs=42.4
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHhhCcc-ccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYDKYEG-EIGVEITNHGKTALHVAAEANRIDFVKKLLKR 87 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~ 87 (593)
..|.+|.-.+......++.+..+.++++-.. ......|..|+..+......+..+-...+++.
T Consensus 19 ~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~ 82 (333)
T 3bwt_A 19 CKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKI 82 (333)
T ss_dssp TSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHH
Confidence 3477777788888888888877777765222 12222477888887777777777666666554
No 122
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=34.55 E-value=77 Score=30.56 Aligned_cols=27 Identities=0% Similarity=-0.251 Sum_probs=16.0
Q ss_pred ccccccchHhHHHHHcCCHHHHHHHHh
Q 007677 25 AETITRRLKLYRAALNGDWAVAKDIYD 51 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g~~~~v~~Ll~ 51 (593)
..|..|+..+......++.+....+++
T Consensus 55 ~~d~~gn~vvQkll~~~~~~~~~~i~~ 81 (333)
T 3bwt_A 55 MTDSFGNYLIQKLLEEVTTEQRIVLTK 81 (333)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hcCcccHHHHHHHHhhCCHHHHHHHHH
Confidence 346666666666666666655555544
No 123
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=27.51 E-value=1.2e+02 Score=30.10 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=38.4
Q ss_pred HHHHHcCCHHHHHHHHhhCccccccccC-------------CCCCcHHHHHHHcCCHHHHHHHHHc
Q 007677 35 YRAALNGDWAVAKDIYDKYEGEIGVEIT-------------NHGKTALHVAAEANRIDFVKKLLKR 87 (593)
Q Consensus 35 h~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-------------~~g~T~Lh~Aa~~g~~~~v~~Ll~~ 87 (593)
...+..|+.+.|+..+..+| +++.+.+ .-|.|.+|+|++..+.|++..|+..
T Consensus 27 c~gv~e~~~~~ve~y~~~gg-~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGG-DIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTC-CTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHcCChhHHHHHHhcCC-chhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 34567899999999998744 3333221 3478999999999999998888864
No 124
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=27.49 E-value=3e+02 Score=23.75 Aligned_cols=134 Identities=11% Similarity=-0.000 Sum_probs=85.3
Q ss_pred cchHhHHHHHcCCHHHHHHHHhhCccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCchhhhchhcCCChHHHHHHH
Q 007677 30 RRLKLYRAALNGDWAVAKDIYDKYEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSAEDLAKQNKIGCTAVFYAVA 109 (593)
Q Consensus 30 ~~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 109 (593)
.++-+-.|...|+++.+..+.+.- +. ...-.+.=..|...|+.++++...++. +|.. ..+.+...
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l----~~--~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-------~D~~--~L~~Ly~~ 72 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKL----ND--SITWERLIQEALAQGNASLAEMIYQTQ-------HSFD--KLSFLYLV 72 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH----CC--HHHHHHHHHHHHHTTCHHHHHHHHHHT-------TCHH--HHHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHh----CC--HHHHHHHHHHHHHcCChHHHHHHHHHh-------CCHH--HHHHHHHH
Confidence 346678899999999988887651 11 111234556788899999999888873 2222 23344455
Q ss_pred cCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH-HHHHHHHHhcccccCCcchhHHHHHHHHcCCHHHHHHHHHh
Q 007677 110 SESVELVKATMKGNEGIATLPDNDGMLPIVRAASLGRT-EVVEFLYRETKNSLKDDDCIELLVQLIETGLYAVALQLLHD 188 (593)
Q Consensus 110 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~-~iv~~Ll~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 188 (593)
.|+.+-++.+.+.. ....+-...++.+...|+. +.++.|.+.+. ..-+...|-.+|..++.+.+++.
T Consensus 73 tg~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r-------~~eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 73 TGDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGS-------LPLAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCC-------hHHHHHHHHHcCcHHHHHHHHHH
Confidence 67777776665421 1122234567777777875 46677766543 22345567778999999999887
Q ss_pred cc
Q 007677 189 HR 190 (593)
Q Consensus 189 ~~ 190 (593)
.+
T Consensus 141 ~~ 142 (177)
T 3mkq_B 141 AE 142 (177)
T ss_dssp TT
T ss_pred hC
Confidence 43
No 125
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=22.97 E-value=58 Score=20.15 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=14.4
Q ss_pred HhHHHHHcCCHHHHHHHH
Q 007677 33 KLYRAALNGDWAVAKDIY 50 (593)
Q Consensus 33 ~Lh~Aa~~g~~~~v~~Ll 50 (593)
.++.||..||.+.++.|=
T Consensus 16 qiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 468899999999888653
No 126
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=21.79 E-value=1.8e+02 Score=28.75 Aligned_cols=87 Identities=9% Similarity=0.049 Sum_probs=46.7
Q ss_pred cccccchHhHHHHHcCCHHHHHHHHhh--CccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCc--hhhhchhcCCC
Q 007677 26 ETITRRLKLYRAALNGDWAVAKDIYDK--YEGEIGVEITNHGKTALHVAAEANRIDFVKKLLKRMSA--EDLAKQNKIGC 101 (593)
Q Consensus 26 ~~~~~~t~Lh~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~~g~T~Lh~Aa~~g~~~~v~~Ll~~~~~--~~~~~~d~~g~ 101 (593)
.|..|+..+......|+.+..+.++.+ .|.......+..|.-++..+......+-...|++...+ ..--.+|.+|+
T Consensus 67 ~d~~Gn~vvQklle~~~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~Gn 146 (382)
T 3v71_A 67 HSRNGNFIVQKLVELATPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISI 146 (382)
T ss_dssp SSTTHHHHHHHHHHTCCHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTH
T ss_pred cCcHHHHHHHHHHHhCCHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccc
Confidence 477788888888888887655555443 13222223366777777777776665533333332101 11113566666
Q ss_pred hHHHHHHHcCC
Q 007677 102 TAVFYAVASES 112 (593)
Q Consensus 102 TpLh~A~~~g~ 112 (593)
..+..+...+.
T Consensus 147 hVIQk~le~~~ 157 (382)
T 3v71_A 147 HVIQRVVKQLP 157 (382)
T ss_dssp HHHHHHHTTSC
T ss_pred cHHHHHHHHCC
Confidence 65555554443
No 127
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=20.14 E-value=4.1e+02 Score=26.41 Aligned_cols=233 Identities=12% Similarity=0.095 Sum_probs=0.0
Q ss_pred ccccccchHhHHHHHcC-CHHHHHHHHhhCccc----cccccCCCCCcHHHHHHHcCCH-------HHHHHHHHcCCchh
Q 007677 25 AETITRRLKLYRAALNG-DWAVAKDIYDKYEGE----IGVEITNHGKTALHVAAEANRI-------DFVKKLLKRMSAED 92 (593)
Q Consensus 25 ~~~~~~~t~Lh~Aa~~g-~~~~v~~Ll~~~~~~----~~~~~~~~g~T~Lh~Aa~~g~~-------~~v~~Ll~~~~~~~ 92 (593)
+.|.+|.--|......+ +.+..+.++++--.. +..-.|..|+..+..-...|.. +--+.+++...|.-
T Consensus 35 a~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~~i~~~l~g~v 114 (412)
T 3k62_A 35 AVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQEKLKNFISSQM 114 (412)
T ss_dssp HTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTH
T ss_pred hcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHHHHHHHHHHHH
Q ss_pred hh-chhcCCChHHHHHHHcCCHHHHHHHHhcC----CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHh----cc--ccc
Q 007677 93 LA-KQNKIGCTAVFYAVASESVELVKATMKGN----EGIATLPDNDGMLPIVRAASLGRTEVVEFLYRE----TK--NSL 161 (593)
Q Consensus 93 ~~-~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~----~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~----~~--~~~ 161 (593)
+. ..|..|.-.+..+...+..+-...+++.- .-+...+|.+|...+.-....+..+-.+++++. +. .-.
T Consensus 115 ~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~~~~~~~~~la 194 (412)
T 3k62_A 115 TDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFVATPEHLRQIC 194 (412)
T ss_dssp HHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHHhcchhHHHHh
Q ss_pred CCcchhHHHHHHHHcCC--------------------HHHHHHHHHhcchhhhccccCCccHHHHHHhcCCCcccccchh
Q 007677 162 KDDDCIELLVQLIETGL--------------------YAVALQLLHDHRYLATKRAKNKETALHVLARKNLGDKDRKNKE 221 (593)
Q Consensus 162 ~~~~g~t~L~~A~~~~~--------------------~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~ 221 (593)
.++.|...+.-++.... .+++..++.+...+. .|..|+-.+.+....+.
T Consensus 195 ~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~--~dq~GNyViQ~iL~~g~--------- 263 (412)
T 3k62_A 195 SDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELA--TNEYANYIIQHIVSNDD--------- 263 (412)
T ss_dssp TSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHH--HSTTTHHHHHHHHHCGG---------
T ss_pred cCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh--hCccccHHHHHHHhcCC---------
Q ss_pred HHHH-HHHHHHHHHhcChHHHHHHhhcchhHHHHHHHcCcHHHHHHHHHH
Q 007677 222 AETL-VESLWEEVILLSKQEIWELIEQPRELIHDAADRGNVQFLSILIRE 270 (593)
Q Consensus 222 ~~~~-~~~L~~~~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~ 270 (593)
.+- -+.+++.....+.... ..++.|...+.-+...+..+..+.+++.
T Consensus 264 -~~~~r~~ii~~~l~~~~~~L-S~~KfgSnVVek~L~~~~~~~r~~ii~e 311 (412)
T 3k62_A 264 -LAVYRECIIEKCLMRNLLSL-SQEKFASHVVEKAFLHAPLELLAEMMDE 311 (412)
T ss_dssp -GHHHHHHHHHHHTTTCHHHH-HTSTTHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHHHHH-hcccHhHHHHHHHHHhCCHHHHHHHHHH
Done!