Query 007679
Match_columns 593
No_of_seqs 307 out of 2786
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 07:48:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3beh_A MLL3241 protein; transm 100.0 3.9E-35 1.3E-39 307.2 16.4 183 295-564 159-341 (355)
2 2ptm_A Hyperpolarization-activ 100.0 3.7E-31 1.3E-35 253.6 23.0 187 351-564 1-187 (198)
3 3bpz_A Potassium/sodium hyperp 100.0 1.1E-30 3.6E-35 251.3 24.6 186 351-564 2-187 (202)
4 3ukn_A Novel protein similar t 100.0 9.9E-32 3.4E-36 260.4 15.5 192 347-564 1-192 (212)
5 1orq_C Potassium channel; volt 99.9 7E-23 2.4E-27 199.9 18.0 211 26-352 9-220 (223)
6 2r9r_B Paddle chimera voltage 99.8 1E-19 3.4E-24 197.9 13.2 241 66-419 239-488 (514)
7 4f8a_A Potassium voltage-gated 99.8 5.1E-19 1.8E-23 162.3 14.6 140 400-564 5-144 (160)
8 3ocp_A PRKG1 protein; serine/t 99.7 1.1E-17 3.7E-22 149.9 11.0 131 406-563 7-137 (139)
9 2a9h_A Voltage-gated potassium 99.7 2.9E-16 9.8E-21 142.7 11.5 67 296-362 83-149 (155)
10 3idb_B CAMP-dependent protein 99.6 9.1E-16 3.1E-20 141.0 12.8 127 415-564 31-157 (161)
11 3mdp_A Cyclic nucleotide-bindi 99.6 1.4E-15 4.7E-20 136.2 13.4 121 422-564 6-129 (142)
12 1wgp_A Probable cyclic nucleot 99.6 7.4E-16 2.5E-20 137.4 10.9 128 422-563 6-135 (137)
13 3gyd_A CNMP-BD protein, cyclic 99.6 2.7E-15 9.3E-20 141.7 15.3 143 400-564 13-159 (187)
14 4h33_A LMO2059 protein; bilaye 99.6 7E-16 2.4E-20 137.6 9.1 93 297-389 43-135 (137)
15 3pna_A CAMP-dependent protein 99.6 3.1E-15 1.1E-19 136.4 13.5 118 419-563 35-152 (154)
16 1vp6_A CNBD, cyclic-nucleotide 99.6 5E-15 1.7E-19 132.0 13.5 115 421-564 10-124 (138)
17 2pqq_A Putative transcriptiona 99.6 3.6E-15 1.2E-19 134.5 12.3 122 421-564 4-125 (149)
18 4ev0_A Transcription regulator 99.6 1.1E-14 3.6E-19 140.4 16.3 119 424-564 1-119 (216)
19 3vou_A ION transport 2 domain 99.6 1.2E-14 4.3E-19 131.6 15.6 87 297-383 52-148 (148)
20 3dn7_A Cyclic nucleotide bindi 99.6 5.6E-15 1.9E-19 140.0 13.9 122 421-564 6-128 (194)
21 2z69_A DNR protein; beta barre 99.6 7.3E-15 2.5E-19 133.3 13.0 123 421-564 11-133 (154)
22 3shr_A CGMP-dependent protein 99.6 3.7E-15 1.3E-19 151.4 11.5 134 402-562 19-152 (299)
23 3fx3_A Cyclic nucleotide-bindi 99.6 4.8E-14 1.6E-18 137.9 16.2 124 419-564 8-131 (237)
24 2ih3_C Voltage-gated potassium 99.5 2.4E-14 8.2E-19 125.1 11.5 60 296-355 60-119 (122)
25 3d0s_A Transcriptional regulat 99.5 1.4E-14 4.7E-19 140.8 11.0 122 421-564 5-126 (227)
26 3dkw_A DNR protein; CRP-FNR, H 99.5 2.2E-14 7.4E-19 139.3 11.9 122 421-564 8-130 (227)
27 3dv8_A Transcriptional regulat 99.5 4.8E-14 1.7E-18 136.1 13.6 121 422-564 3-125 (220)
28 2d93_A RAP guanine nucleotide 99.5 4.3E-15 1.5E-19 132.0 5.4 124 411-561 5-130 (134)
29 3shr_A CGMP-dependent protein 99.5 9.4E-14 3.2E-18 140.9 15.9 126 418-564 153-278 (299)
30 2gau_A Transcriptional regulat 99.5 8.3E-14 2.8E-18 135.8 14.6 118 425-564 13-130 (232)
31 4ava_A Lysine acetyltransferas 99.5 7.8E-14 2.7E-18 143.8 14.9 120 421-564 12-131 (333)
32 3of1_A CAMP-dependent protein 99.5 4.5E-14 1.5E-18 138.6 12.3 119 419-563 122-240 (246)
33 3e97_A Transcriptional regulat 99.5 1.4E-13 4.7E-18 134.1 15.4 122 421-564 5-126 (231)
34 3iwz_A CAP-like, catabolite ac 99.5 1.4E-13 4.9E-18 133.7 15.0 123 421-564 10-137 (230)
35 3of1_A CAMP-dependent protein 99.5 7.4E-14 2.5E-18 137.0 12.6 117 420-563 5-121 (246)
36 1zyb_A Transcription regulator 99.5 1.3E-13 4.5E-18 134.6 13.5 123 421-564 17-141 (232)
37 2qcs_B CAMP-dependent protein 99.5 3E-13 1E-17 136.5 15.5 126 418-564 153-278 (291)
38 2qcs_B CAMP-dependent protein 99.5 2.8E-13 9.4E-18 136.8 14.0 120 418-564 35-154 (291)
39 3eff_K Voltage-gated potassium 99.5 2.3E-13 8E-18 121.9 11.3 60 296-355 39-98 (139)
40 3tnp_B CAMP-dependent protein 99.4 3.7E-13 1.3E-17 143.2 13.5 124 416-562 139-262 (416)
41 3ryp_A Catabolite gene activat 99.4 9.6E-13 3.3E-17 125.9 14.5 116 428-564 2-117 (210)
42 2fmy_A COOA, carbon monoxide o 99.4 4.6E-13 1.6E-17 129.4 12.3 113 422-564 4-116 (220)
43 1o7f_A CAMP-dependent RAP1 gua 99.4 5.6E-13 1.9E-17 144.1 12.9 137 407-564 27-163 (469)
44 2oz6_A Virulence factor regula 99.4 2.1E-12 7.1E-17 123.3 14.9 111 433-564 1-114 (207)
45 1ft9_A Carbon monoxide oxidati 99.4 5.2E-13 1.8E-17 129.2 10.8 112 423-564 1-112 (222)
46 4din_B CAMP-dependent protein 99.4 2.7E-13 9.3E-18 142.6 8.7 120 418-564 126-245 (381)
47 4din_B CAMP-dependent protein 99.4 3.9E-13 1.3E-17 141.5 9.7 126 418-564 244-369 (381)
48 3kcc_A Catabolite gene activat 99.4 3.8E-12 1.3E-16 126.5 14.4 113 431-564 55-167 (260)
49 1o7f_A CAMP-dependent RAP1 gua 99.4 1.7E-12 5.8E-17 140.3 12.3 120 419-564 334-455 (469)
50 4f7z_A RAP guanine nucleotide 99.4 1.7E-12 5.7E-17 153.2 12.5 138 402-561 23-160 (999)
51 3tnp_B CAMP-dependent protein 99.3 3.7E-12 1.3E-16 135.4 12.9 129 420-564 265-393 (416)
52 1o5l_A Transcriptional regulat 99.3 1.9E-12 6.5E-17 124.5 9.7 117 427-564 4-120 (213)
53 2q67_A Potassium channel prote 99.3 1.1E-11 3.8E-16 106.6 12.9 60 297-356 49-108 (114)
54 2k1e_A Water soluble analogue 99.3 1.2E-12 4.1E-17 110.8 5.4 60 296-355 39-98 (103)
55 3cf6_E RAP guanine nucleotide 99.3 8.2E-12 2.8E-16 140.6 11.8 135 401-562 12-148 (694)
56 3e6c_C CPRK, cyclic nucleotide 99.3 7.6E-12 2.6E-16 123.4 8.5 114 426-564 13-126 (250)
57 3la7_A Global nitrogen regulat 99.2 4.6E-11 1.6E-15 117.3 12.5 110 435-564 30-142 (243)
58 3ouf_A Potassium channel prote 99.2 7E-11 2.4E-15 98.5 10.7 56 297-352 32-87 (97)
59 2bgc_A PRFA; bacterial infecti 99.2 1.1E-10 3.8E-15 114.1 13.9 111 432-564 3-117 (238)
60 4f7z_A RAP guanine nucleotide 99.2 8.7E-11 3E-15 138.6 13.7 115 419-559 334-450 (999)
61 3rvy_A ION transport protein; 99.2 1.3E-10 4.5E-15 117.1 12.9 61 295-355 178-244 (285)
62 3ldc_A Calcium-gated potassium 99.2 5.4E-11 1.9E-15 95.9 7.5 54 297-350 28-81 (82)
63 3pjs_K KCSA, voltage-gated pot 99.1 2.7E-12 9.4E-17 118.4 -1.4 64 296-359 66-129 (166)
64 1xl4_A Inward rectifier potass 99.0 1.4E-09 4.7E-14 109.6 10.9 57 296-352 81-137 (301)
65 3b02_A Transcriptional regulat 98.9 1.3E-09 4.4E-14 103.0 8.3 88 448-564 2-89 (195)
66 1p7b_A Integral membrane chann 98.9 1E-09 3.5E-14 111.6 7.7 59 296-354 95-153 (333)
67 3um7_A Potassium channel subfa 98.9 3.1E-09 1.1E-13 106.6 10.0 57 297-353 115-171 (309)
68 2qks_A KIR3.1-prokaryotic KIR 98.8 1.4E-08 4.8E-13 102.9 12.2 58 297-354 78-135 (321)
69 2zcw_A TTHA1359, transcription 98.8 4.9E-09 1.7E-13 99.5 7.7 94 441-564 1-96 (202)
70 3um7_A Potassium channel subfa 98.6 1.5E-08 5.2E-13 101.5 4.7 61 297-357 224-290 (309)
71 3ukm_A Potassium channel subfa 98.6 5.1E-08 1.7E-12 96.3 7.8 56 297-352 93-148 (280)
72 4gx0_A TRKA domain protein; me 98.6 1.4E-07 4.9E-12 104.1 11.8 54 297-350 51-105 (565)
73 3sya_A G protein-activated inw 98.6 2.4E-07 8.1E-12 94.0 12.3 59 296-354 90-150 (340)
74 3ukm_A Potassium channel subfa 98.5 6.6E-08 2.3E-12 95.4 5.0 55 298-352 202-263 (280)
75 3spc_A Inward-rectifier K+ cha 98.5 5.2E-07 1.8E-11 91.6 10.6 59 296-354 93-153 (343)
76 1lnq_A MTHK channels, potassiu 98.4 2.3E-08 8E-13 103.0 -2.0 57 298-354 46-102 (336)
77 4dxw_A Navrh, ION transport pr 98.1 4.4E-05 1.5E-09 73.8 15.1 56 296-351 164-224 (229)
78 2kyh_A KVAP, voltage-gated pot 97.2 0.00071 2.4E-08 60.3 7.3 68 66-180 52-119 (147)
79 1ors_C Potassium channel; volt 97.2 0.0009 3.1E-08 58.6 7.6 48 65-151 36-83 (132)
80 2kxw_B Sodium channel protein 73.0 3 0.0001 25.2 2.7 21 571-591 5-25 (27)
81 2l53_B CAM, voltage-gated sodi 72.2 3.3 0.00011 25.8 2.8 21 571-591 5-25 (31)
82 3rns_A Cupin 2 conserved barre 63.7 26 0.00089 32.7 8.9 68 445-545 39-106 (227)
83 3fjs_A Uncharacterized protein 63.0 26 0.00089 28.6 7.8 67 445-544 38-104 (114)
84 2ozj_A Cupin 2, conserved barr 62.3 33 0.0011 27.7 8.3 44 449-511 44-87 (114)
85 3kg2_A Glutamate receptor 2; I 61.8 8.7 0.0003 43.4 6.0 55 297-352 563-617 (823)
86 1yhf_A Hypothetical protein SP 55.6 50 0.0017 26.4 8.3 68 445-545 42-109 (115)
87 2pfw_A Cupin 2, conserved barr 50.0 62 0.0021 25.9 8.0 68 445-545 36-103 (116)
88 3lwc_A Uncharacterized protein 47.4 34 0.0012 28.3 5.9 45 447-511 44-88 (119)
89 2gu9_A Tetracenomycin polyketi 45.5 29 0.001 27.6 5.2 33 446-478 24-59 (113)
90 4e2g_A Cupin 2 conserved barre 44.5 29 0.001 28.5 5.1 48 445-511 43-90 (126)
91 1v70_A Probable antibiotics sy 43.9 33 0.0011 26.6 5.2 47 446-511 31-78 (105)
92 1o5u_A Novel thermotoga mariti 39.1 81 0.0028 25.1 6.8 47 445-511 33-79 (101)
93 3h8u_A Uncharacterized conserv 37.3 51 0.0018 26.9 5.6 49 445-511 41-90 (125)
94 3ibm_A Cupin 2, conserved barr 34.4 49 0.0017 29.2 5.2 48 445-511 58-105 (167)
95 2b8m_A Hypothetical protein MJ 34.3 45 0.0016 26.9 4.7 31 448-478 32-62 (117)
96 3rns_A Cupin 2 conserved barre 32.5 1.1E+02 0.0038 28.2 7.7 67 445-544 155-222 (227)
97 4i4a_A Similar to unknown prot 29.5 63 0.0022 26.4 4.8 46 447-511 38-83 (128)
98 2i45_A Hypothetical protein; n 29.2 52 0.0018 26.0 4.1 69 450-550 35-103 (107)
99 1vj2_A Novel manganese-contain 28.5 53 0.0018 27.1 4.2 32 447-478 52-83 (126)
100 3d82_A Cupin 2, conserved barr 28.5 1.3E+02 0.0044 23.1 6.4 51 463-546 50-100 (102)
101 3bcw_A Uncharacterized protein 28.3 52 0.0018 27.5 4.0 43 450-511 56-98 (123)
102 3kgz_A Cupin 2 conserved barre 28.1 48 0.0016 28.9 3.9 32 447-478 48-79 (156)
103 1dgw_A Canavalin; duplicated s 28.0 48 0.0016 29.6 4.0 52 445-511 43-94 (178)
104 3es4_A Uncharacterized protein 27.5 60 0.0021 26.9 4.1 43 450-511 49-91 (116)
105 3jzv_A Uncharacterized protein 27.2 45 0.0015 29.5 3.6 46 447-511 57-102 (166)
106 1o4t_A Putative oxalate decarb 27.2 63 0.0021 27.0 4.4 46 447-511 61-107 (133)
107 4b29_A Dimethylsulfoniopropion 27.0 94 0.0032 28.8 5.8 45 449-511 138-182 (217)
108 2fqp_A Hypothetical protein BP 26.5 38 0.0013 26.5 2.7 49 446-511 21-70 (97)
109 3lag_A Uncharacterized protein 26.2 25 0.00084 28.0 1.5 34 445-478 19-53 (98)
110 1sfn_A Conserved hypothetical 26.1 2.6E+02 0.0088 26.0 9.1 44 447-511 54-97 (246)
111 3i7d_A Sugar phosphate isomera 26.0 51 0.0017 28.9 3.7 47 446-511 46-94 (163)
112 1y9q_A Transcriptional regulat 25.2 93 0.0032 27.6 5.5 45 448-511 109-155 (192)
113 3es1_A Cupin 2, conserved barr 25.1 71 0.0024 28.5 4.5 48 445-510 81-128 (172)
114 2bnm_A Epoxidase; oxidoreducta 24.9 64 0.0022 28.9 4.3 49 448-511 122-173 (198)
115 3l2h_A Putative sugar phosphat 24.6 48 0.0017 28.7 3.3 46 446-510 49-96 (162)
116 2vpv_A Protein MIF2, MIF2P; nu 24.3 52 0.0018 29.2 3.4 32 461-511 108-139 (166)
117 2f4p_A Hypothetical protein TM 23.8 1.3E+02 0.0044 25.5 5.9 47 447-511 52-98 (147)
118 4e2q_A Ureidoglycine aminohydr 23.5 1.5E+02 0.0051 28.4 6.7 69 446-546 73-141 (266)
119 1sfn_A Conserved hypothetical 22.9 90 0.0031 29.3 5.1 50 443-511 165-215 (246)
120 2pyt_A Ethanolamine utilizatio 21.8 72 0.0025 26.9 3.7 44 447-511 61-104 (133)
121 3h7j_A Bacilysin biosynthesis 21.6 97 0.0033 28.9 5.0 34 445-478 36-69 (243)
122 3cew_A Uncharacterized cupin p 21.5 85 0.0029 25.6 4.1 33 446-478 29-63 (125)
123 1yfu_A 3-hydroxyanthranilate-3 21.2 72 0.0025 28.4 3.6 34 462-511 54-88 (174)
124 1sef_A Conserved hypothetical 20.9 1E+02 0.0035 29.4 5.1 48 445-511 184-232 (274)
125 2opk_A Hypothetical protein; p 20.7 1.2E+02 0.0041 24.4 4.8 34 461-511 51-84 (112)
126 2q30_A Uncharacterized protein 20.3 3E+02 0.01 21.1 7.8 47 447-511 37-85 (110)
No 1
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=100.00 E-value=3.9e-35 Score=307.24 Aligned_cols=183 Identities=18% Similarity=0.211 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcC
Q 007679 295 PQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIE 374 (593)
Q Consensus 295 ~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~ 374 (593)
+..|..|+||+++||||+||||++|.|..|+++++++|++|.+++++.+|.+++.+.+..++
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~------------------ 220 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRR------------------ 220 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 35688999999999999999999999999999999999999999999999998876532110
Q ss_pred CCCHHHHHHHHHHHHHHHhccCCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCC
Q 007679 375 KLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHT 454 (593)
Q Consensus 375 ~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge 454 (593)
+++. .+.+.++++|+|++++++.+++++..++++.++|||
T Consensus 221 ----------~~~~------------------------------~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge 260 (355)
T 3beh_A 221 ----------GDFV------------------------------RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGA 260 (355)
T ss_dssp ----------HHHH------------------------------HHHC--------------------------------
T ss_pred ----------Hhhc------------------------------ccchhhhcccccccCCHHHHHHHHHhceEEEECCCC
Confidence 0010 024678889999999999999999999999999999
Q ss_pred EEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEE
Q 007679 455 HISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTV 534 (593)
Q Consensus 455 ~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv 534 (593)
.|+++||.++++|||.+|.|+++. .+ . ..+++|++|||.+++.+ .++.+++
T Consensus 261 ~I~~~G~~~~~ly~I~~G~v~v~~----~~-~---------------~~l~~G~~fGe~~~l~~---------~~~~~~~ 311 (355)
T 3beh_A 261 VICRIGEPGDRMFFVVEGSVSVAT----PN-P---------------VELGPGAFFGEMALISG---------EPRSATV 311 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEeCCCcCceEEEEEeeEEEEEE----CC-e---------------eEECCCCEEeehHHhCC---------CCcceEE
Confidence 999999999999999999999988 22 2 47899999999987521 2678999
Q ss_pred EEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 535 QTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 535 ~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+|.++|+++.|++++|.++++++|++....
T Consensus 312 ~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l 341 (355)
T 3beh_A 312 SAATTVSLLSLHSADFQMLCSSSPEIAEIF 341 (355)
T ss_dssp ------------------------------
T ss_pred EECccEEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 999999999999999999999999998766
No 2
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}
Probab=99.98 E-value=3.7e-31 Score=253.60 Aligned_cols=187 Identities=17% Similarity=0.290 Sum_probs=173.1
Q ss_pred HhhchhHHHHHHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCHhh
Q 007679 351 ESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEF 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F 430 (593)
++++++..+|+++|+.+++||+.+++|++||.||++||+|.|. .++.+++++++.||++||.++..+++.++++++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f 79 (198)
T 2ptm_A 1 GAMDSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYR-GKMFDERHIFREVSESIRQDVANYNCRDLVASVPFF 79 (198)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcch
Confidence 3678899999999999999999999999999999999999997 578899999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCee
Q 007679 431 KKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFW 510 (593)
Q Consensus 431 ~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~F 510 (593)
++++++++..++..+++..|.|||+|+++||.++.+|||.+|.|+++. .+|. .+..+++|++|
T Consensus 80 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~----~~g~-------------~~~~l~~G~~f 142 (198)
T 2ptm_A 80 VGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM----SDGV-------------IATSLSDGSYF 142 (198)
T ss_dssp TTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC----TTSC-------------EEEEECTTCEE
T ss_pred hcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe----cCCe-------------EEEEecCCCEe
Confidence 999999999999999999999999999999999999999999999998 5654 67899999999
Q ss_pred cchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 511 GEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 511 Ge~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
||.+++.. .++.++++|.++|+++.|++++|.++++++|++....
T Consensus 143 Ge~~~~~~---------~~~~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~ 187 (198)
T 2ptm_A 143 GEICLLTR---------ERRVASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTM 187 (198)
T ss_dssp SCHHHHHS---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred chHHHcCC---------CccceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHH
Confidence 99987632 1678999999999999999999999999999997665
No 3
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*
Probab=99.97 E-value=1.1e-30 Score=251.29 Aligned_cols=186 Identities=18% Similarity=0.270 Sum_probs=170.7
Q ss_pred HhhchhHHHHHHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHhhCCHHHHHHHHHHHHHHHhhcCHhh
Q 007679 351 ESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKSVEEF 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F 430 (593)
++++++..+|+++|+.+++||+.+++|++||.||++||+|.|. .++.+++++++.||+.||.++..+++.++++++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~-~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f 80 (202)
T 3bpz_A 2 SAMDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQ-GKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLF 80 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-ccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCch
Confidence 4688999999999999999999999999999999999999997 478899999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCee
Q 007679 431 KKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFW 510 (593)
Q Consensus 431 ~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~F 510 (593)
.+++++++..|+..+++..|.||++|+++||.++.+|||.+|.|+++. .+|. ...+++|++|
T Consensus 81 ~~l~~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~----~~g~--------------~~~l~~G~~f 142 (202)
T 3bpz_A 81 ANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT----KGNK--------------EMKLSDGSYF 142 (202)
T ss_dssp HTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC----TTSC--------------CEEEETTCEE
T ss_pred hcCCHHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE----CCCe--------------EEEEcCCCEe
Confidence 999999999999999999999999999999999999999999999987 4554 1368999999
Q ss_pred cchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 511 GEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 511 Ge~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
||.+++.. .++.++++|.++|+++.|++++|.++++++|++....
T Consensus 143 Ge~~~~~~---------~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~ 187 (202)
T 3bpz_A 143 GEICLLTR---------GRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAF 187 (202)
T ss_dssp CHHHHHHC---------SBCSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHH
T ss_pred ccHHHhcC---------CCcccEEEEeeEEEEEEEEHHHHHHHHHHCHHHHHHH
Confidence 99987632 1678999999999999999999999999999997665
No 4
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B
Probab=99.97 E-value=9.9e-32 Score=260.45 Aligned_cols=192 Identities=18% Similarity=0.298 Sum_probs=167.7
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhHhhcCCCCHHHHHHHHHHHHHHHhccCCCCHHHHHhhCCHHHHHHHHHHHHHHHhhc
Q 007679 347 QMYLESKALKSKEMSVRMQEINEWMPIEKLSQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHELCLELLKS 426 (593)
Q Consensus 347 ~~i~~~~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~~~~~l~~ 426 (593)
|+|++++++++++|+++|+.+++||+.+++|++||.||++||+|.|..+++.+++++++.||++||.++..+++..++ +
T Consensus 1 g~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~ 79 (212)
T 3ukn_A 1 GAMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-Q 79 (212)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-G
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-h
Confidence 578999999999999999999999999999999999999999999998889999999999999999999999998877 8
Q ss_pred CHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCC
Q 007679 427 VEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLAD 506 (593)
Q Consensus 427 i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~ 506 (593)
+|+|++++++++..++..+++..|.|||+|+++||.++.+|||.+|.|+++. +|. .+..+++
T Consensus 80 ~~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~-----~~~-------------~~~~l~~ 141 (212)
T 3ukn_A 80 LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK-----DNT-------------VLAILGK 141 (212)
T ss_dssp SGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES-----SSC-------------EEEEECT
T ss_pred cHHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE-----CCe-------------EEEEecC
Confidence 9999999999999999999999999999999999999999999999999988 333 7789999
Q ss_pred CCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 507 GDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 507 G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
|++|||.+++.. ...+++++++|.++|+++.|++++|.++++++|++....
T Consensus 142 G~~fGe~~~~~~-------~~~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~ 192 (212)
T 3ukn_A 142 GDLIGSDSLTKE-------QVIKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKF 192 (212)
T ss_dssp TCEEECSCCSSS-------SCCBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred CCCcCcHHhccC-------CCCCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHH
Confidence 999999976421 111678999999999999999999999999999997665
No 5
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.90 E-value=7e-23 Score=199.86 Aligned_cols=211 Identities=13% Similarity=0.169 Sum_probs=139.5
Q ss_pred ChhHHHHHHHHHHHHHhhhhhheeeecCCCcceecCccchhhHHHHHHHHHHHHHHHhhheeeeeEEecccccccCCcee
Q 007679 26 PWKFIWFMLCATAVSLDFWFFYIPVVNDDRKCISLDAKLAITACLLRFLFDFLYSIPIALQMLTDLVSTDYVSYGENDSY 105 (593)
Q Consensus 26 ~Wd~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~g~~~ 105 (593)
.||.+++++.+++.+.+++.... ..+.+....+..+|.+++++|.+|++++|.++.
T Consensus 9 ~f~~~i~~lil~~~~~~~~~~~~----------~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~-------------- 64 (223)
T 1orq_C 9 LVELGVSYAALLSVIVVVVECTM----------QLSGEYLVRLYLVDLILVIILWADYAYRAYKSG-------------- 64 (223)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHH----------HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTS--------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc----------ccChhhhhHHHHHHHHHHHHHHHHHHHHHcccc--------------
Confidence 57877777777777655554211 112223456889999999999999999999531
Q ss_pred EeecchhhhhccCCCCCCcccchHHHhhhhccchhhhHHhhcchhhhhhhhcccCCcchhHHHHHHHHHHHHHHHhHHHH
Q 007679 106 VTHTLRMIVDLVGGNNSRRNISHIRVCEYLSPSLLVDLLAIFPLPQLVILFIIPQMRGSKILDAMDLLKYSVFIQFVPRI 185 (593)
Q Consensus 106 v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~~F~~Dlls~lP~~~~~~~~~~~~~~~~~~l~~~rlLrl~rl~~~~~rl 185 (593)
- .++|+|+ +++|++|++|++....... ..+....++.+|++|++|++|...++
T Consensus 65 --------------------~----~~~y~~~-~iiDllailP~~~~~~~~~--~~~~~~~lr~lRllRllR~~r~~~~~ 117 (223)
T 1orq_C 65 --------------------D----PAGYVKK-TLYEIPALVPAGLLALIEG--HLAGLGLFRLVRLLRFLRILLIISRG 117 (223)
T ss_dssp --------------------C----HHHHHHH-HHHHCTTHHHHHHHHHHHH--HHHTTTCHHHHHHHHHHHHHHHHHSC
T ss_pred --------------------c----HHHHHHH-hHHHHHHHHHHHHHHHHhc--chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 7789998 9999999999976543110 00001234555555555444432111
Q ss_pred HhHhcchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCccccCCCCCCcccccccc
Q 007679 186 VRIYPWSVAKLAEATWVIAAFNLL-LYMFAGHVFGALWYFSAIERETECWKKACMNDTGCNRGSFDCDDCIGDYKFLDGV 264 (593)
Q Consensus 186 ~r~~~~~~~~~~~~~~~~~~~~Ll-~~~l~~H~~aC~wy~i~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~sWi~~~ 264 (593)
.+..+ . .........+..++ ..+++.|+.||++|.+.. .+
T Consensus 118 ~~~~~---~-l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~---------------------------~~-------- 158 (223)
T 1orq_C 118 SKFLS---A-IADAADKIRFYHLFGAVMLTVLYGAFAIYIVEY---------------------------PD-------- 158 (223)
T ss_dssp SSHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS---------------------------SS--------
T ss_pred HHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------CC--------
Confidence 11111 0 11100011222233 344578999999987631 00
Q ss_pred CCCcCCCCCCCccchhhhhhhcCccccCChhhHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHH
Q 007679 265 CPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFG 344 (593)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig 344 (593)
+++....|..|+||+++|||||||||++|.|..|+++++++|++|.+++|+.+|
T Consensus 159 --------------------------~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~ 212 (223)
T 1orq_C 159 --------------------------PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIG 212 (223)
T ss_dssp --------------------------TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 012235789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 007679 345 NMQMYLES 352 (593)
Q Consensus 345 ~i~~i~~~ 352 (593)
.+++.+++
T Consensus 213 ~i~~~~~~ 220 (223)
T 1orq_C 213 TVSNMFQK 220 (223)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 6
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=99.80 E-value=1e-19 Score=197.88 Aligned_cols=241 Identities=10% Similarity=0.107 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHHHHHhhheeeeeEEecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhcc-chhhhHH
Q 007679 66 ITACLLRFLFDFLYSIPIALQMLTDLVSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSP-SLLVDLL 144 (593)
Q Consensus 66 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~-~F~~Dll 144 (593)
..+.++|.++.++|.+|+++++.++ + - .++|+++ |.++|++
T Consensus 239 ~~l~~ie~i~~~iFtiE~ilR~~~~-----------~-----------------------~----k~~Y~ks~wniiDli 280 (514)
T 2r9r_B 239 DPFFIVETLCIIWFSFEFLVRFFAC-----------P-----------------------S----KAGFFTNIMNIIDIV 280 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHS-----------S-----------------------C----SSSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC-----------C-----------------------c----HHHHHhchhHHHHHH
Confidence 4678999999999999999999842 1 2 5579998 8999999
Q ss_pred hhcchhhhhhhhcccCCcch---hHHHHHHHHHHHHHHHhHHHHHhHhcchhhhHH--HHH--HHHHHHHHH-HHHHHHH
Q 007679 145 AIFPLPQLVILFIIPQMRGS---KILDAMDLLKYSVFIQFVPRIVRIYPWSVAKLA--EAT--WVIAAFNLL-LYMFAGH 216 (593)
Q Consensus 145 s~lP~~~~~~~~~~~~~~~~---~~l~~~rlLrl~rl~~~~~rl~r~~~~~~~~~~--~~~--~~~~~~~Ll-~~~l~~H 216 (593)
+++|+.+.+...... ..+. ..+..+|++|++|++ |++|+.+...++.. ... ....+..++ +.++..+
T Consensus 281 ~iip~~i~l~~~~~~-~~~~~~~~~~~~lrvlRllRvl----RilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~ 355 (514)
T 2r9r_B 281 AIIPYYVTIFLTESN-KSVLQFQNVRRVVQIFRIMRIL----RIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVI 355 (514)
T ss_dssp TTHHHHHHHHHHHTS-CSHHHHHTTHHHHHHHHHHGGG----GGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc-ccchhhhhHHHHHHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999986543321111 0011 112333333333332 22233222111110 000 011122222 2234567
Q ss_pred HHHHHHHHhhhhhhhHHHHhhccCCCCCCCccccCCCCCCccccccccCCCcCCCCCCCccchhhhhhhcCccccCChhh
Q 007679 217 VFGALWYFSAIERETECWKKACMNDTGCNRGSFDCDDCIGDYKFLDGVCPTKIRNTSIHDFGIFQDALQSGIVEVTDFPQ 296 (593)
Q Consensus 217 ~~aC~wy~i~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~sWi~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 296 (593)
++||+.|.+.. .. +.+.+.
T Consensus 356 if~~~~~~~e~---------------------------~~----------------------------------~~~~F~ 374 (514)
T 2r9r_B 356 LFSSAVYFAEA---------------------------DE----------------------------------RDSQFP 374 (514)
T ss_dssp HHHHHHHHHHT---------------------------TC----------------------------------TTCSCS
T ss_pred HHHhhhheeec---------------------------cC----------------------------------CCcccc
Confidence 77887775420 00 112335
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcCCC
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIEKL 376 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l 376 (593)
.|..|+||+++|||||||||+.|.+..++++++++|++|.+++++.+|.+.+.++....++++ ++..+..++++.....
T Consensus 375 s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~~~~-~~~~~l~~h~iicg~~ 453 (514)
T 2r9r_B 375 SIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE-GEEQAQYLQVTSSPKI 453 (514)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHC------------------
T ss_pred chhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCCEEEeCCC
Confidence 678999999999999999999999999999999999999999999999999887766543222 2222233334443333
Q ss_pred CHHHHHHHHHHHHHHHhccCCCCHHHHHhhCCHHHHHHHHHHH
Q 007679 377 SQSVQQQLKIYQRYVWRKPNNIDVESTLSSLPKELIRNIKHEL 419 (593)
Q Consensus 377 p~~L~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~Lr~~i~~~~ 419 (593)
|.....+ + .+.+...++.-..+|.+.++.++...-
T Consensus 454 ~~~~~l~--~------~~~~~~~~~s~~~el~e~~~~~~~~~~ 488 (514)
T 2r9r_B 454 PSSPDLK--K------SRSASTISKSDYMEIQEGVNNSNEDFR 488 (514)
T ss_dssp -------------------------------------------
T ss_pred ccchhHH--h------cccCCCccccccccccccccccccccc
Confidence 3332211 0 122333445566778888877766543
No 7
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}
Probab=99.80 E-value=5.1e-19 Score=162.26 Aligned_cols=140 Identities=20% Similarity=0.258 Sum_probs=118.3
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEee
Q 007679 400 VESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSS 479 (593)
Q Consensus 400 ~~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~ 479 (593)
.+++++.||+.||.++..+++.+.++++|+|++++++.++.++..++...|.+|+.|+++||.++.+|||.+|.|+++.
T Consensus 5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~- 83 (160)
T 4f8a_A 5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ- 83 (160)
T ss_dssp ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchh
Q 007679 480 KERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEI 559 (593)
Q Consensus 480 ~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~ 559 (593)
++ ..+..+++|++||+.+++.. ...++.++++|.++|+++.|++++|.++++++|+
T Consensus 84 ----~~-------------~~~~~~~~G~~fG~~~~~~~-------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~ 139 (160)
T 4f8a_A 84 ----DD-------------EVVAILGKGDVFGDVFWKEA-------TLAQSCANVRALTYCDLHVIKRDALQKVLEFYTA 139 (160)
T ss_dssp ----TT-------------EEEEEEETTCEEECCTTTCS-------SCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHH
T ss_pred ----CC-------------EEEEEecCCCEeCcHHHhcC-------cccceEEEEEECCceEEEEEcHHHHHHHHHHHHH
Confidence 22 36789999999999976421 0126789999999999999999999999999999
Q ss_pred hhhhh
Q 007679 560 SGSTK 564 (593)
Q Consensus 560 l~~~~ 564 (593)
+....
T Consensus 140 ~~~~~ 144 (160)
T 4f8a_A 140 FSHSF 144 (160)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97665
No 8
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*
Probab=99.73 E-value=1.1e-17 Score=149.95 Aligned_cols=131 Identities=21% Similarity=0.289 Sum_probs=113.8
Q ss_pred hCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCC
Q 007679 406 SLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERING 485 (593)
Q Consensus 406 ~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g 485 (593)
++|+.+|.+...+...+.++++++|++++++.++.++..++.+.|.+|++|+++||.++.+|||.+|.|++.. +|
T Consensus 7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-----~g 81 (139)
T 3ocp_A 7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK-----EG 81 (139)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE-----TT
T ss_pred cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE-----CC
Confidence 5788888888888899999999999999999999999999999999999999999999999999999999966 44
Q ss_pred CccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007679 486 SANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 486 ~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
. .+..+++|++||+.+++.. .++.++++|.++|+++.|++++|.++++++|.++.+
T Consensus 82 ~-------------~~~~~~~G~~fGe~~~l~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~ 137 (139)
T 3ocp_A 82 V-------------KLCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT 137 (139)
T ss_dssp E-------------EEEEECTTCEESCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred E-------------EEEEeCCCCEeccHHHHCC---------CCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence 3 6789999999999987532 167899999999999999999999999999999754
No 9
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.66 E-value=2.9e-16 Score=142.71 Aligned_cols=67 Identities=10% Similarity=0.319 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHH
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSV 362 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~ 362 (593)
..|..|+||+++|||||||||++|.|..+++++++.+++|.+++|+++|.+++.+.+...++++..+
T Consensus 83 ~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~~~~~~~~ 149 (155)
T 2a9h_A 83 ISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHFV 149 (155)
T ss_dssp TSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-------
T ss_pred CcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999999999887765544433
No 10
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*
Probab=99.64 E-value=9.1e-16 Score=141.02 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=111.4
Q ss_pred HHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCcccccccc
Q 007679 415 IKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRD 494 (593)
Q Consensus 415 i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~ 494 (593)
-..+...+.++++|+|.+++++.+..++..++...|.+|++|+++||.++.+|||.+|.|+++.. .+|.
T Consensus 31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~---~~g~-------- 99 (161)
T 3idb_B 31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVK---CDGV-------- 99 (161)
T ss_dssp HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEE---ETTE--------
T ss_pred HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEc---CCCC--------
Confidence 33445678999999999999999999999999999999999999999999999999999999972 3443
Q ss_pred CCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 495 NNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 495 ~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
...+..+++|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|.++.+.
T Consensus 100 ---~~~~~~~~~G~~fGe~~~~~---------~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~ 157 (161)
T 3idb_B 100 ---GRCVGNYDNRGSFGELALMY---------NTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM 157 (161)
T ss_dssp ---EEEEEEEESCCEECGGGGTC---------CCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC
T ss_pred ---eEEEEEcCCCCEechHHHHc---------CCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 25778899999999998742 12678999999999999999999999999999997654
No 11
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}
Probab=99.64 E-value=1.4e-15 Score=136.16 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=103.5
Q ss_pred HHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc-
Q 007679 422 ELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK- 500 (593)
Q Consensus 422 ~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~- 500 (593)
+.++++|+|++++++.++.++..++...|.+|+.|+++|+.++.+|+|.+|.|+++.. ..+|+ ...
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~g~-----------~~~~ 72 (142)
T 3mdp_A 6 ERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYS--NGGAG-----------SAAN 72 (142)
T ss_dssp TGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC----------------------
T ss_pred HHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEE--CCCCC-----------ceEe
Confidence 5688999999999999999999999999999999999999999999999999999872 12332 234
Q ss_pred --ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 --MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 --i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+++|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++....
T Consensus 73 ~~~~~~~~G~~fG~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l 129 (142)
T 3mdp_A 73 STVCSVVPGAIFGVSSLIK---------PYHYTSSARATKPVRVVDINGARLREMSENNQALGQVL 129 (142)
T ss_dssp CEEEEECTTCEECGGGSST---------TCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred eeEEEecCCCEechHHHcC---------CCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHH
Confidence 78899999999987641 12678899999999999999999999999999998655
No 12
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2
Probab=99.64 E-value=7.4e-16 Score=137.37 Aligned_cols=128 Identities=38% Similarity=0.670 Sum_probs=104.3
Q ss_pred HHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccc
Q 007679 422 ELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKM 501 (593)
Q Consensus 422 ~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i 501 (593)
+.++++|+|..++++.++.++..++.+.|.+|+.|+++||.++.+|||.+|.|++... .+|. ...+
T Consensus 6 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~---~~g~-----------~~~~ 71 (137)
T 1wgp_A 6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTT---DGGR-----------SGFY 71 (137)
T ss_dssp CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECC---SSCS-----------SSSS
T ss_pred HHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEc---CCCc-----------ceee
Confidence 3578899999999999999999999999999999999999999999999999996641 3443 1344
Q ss_pred e--ecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007679 502 D--HLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 502 ~--~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
. .+++|++|||.++++.+........+++.++++|.++|+++.|++++|.++++++|+++++
T Consensus 72 ~~~~l~~G~~fGe~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~k 135 (137)
T 1wgp_A 72 NRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGPS 135 (137)
T ss_dssp CEEECCTTCBSSTHHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTTT
T ss_pred eeeeecCCCEecHHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHhh
Confidence 5 8999999999986222222111111135789999999999999999999999999999865
No 13
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}
Probab=99.64 E-value=2.7e-15 Score=141.72 Aligned_cols=143 Identities=14% Similarity=0.195 Sum_probs=119.2
Q ss_pred HHHHHhhCCHHH----HHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEE
Q 007679 400 VESTLSSLPKEL----IRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIW 475 (593)
Q Consensus 400 ~~~il~~Lp~~L----r~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~ 475 (593)
+....+.++|.| +.+...+...+.++++|+|.+++++.+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+
T Consensus 13 ~~~~~~~~~~dli~~~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~ 92 (187)
T 3gyd_A 13 ENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVN 92 (187)
T ss_dssp HHHHTSTTGGGCEEEEEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEE
T ss_pred cceeecCCchHHhccCccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEE
Confidence 444555554443 2444555667899999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHH
Q 007679 476 IYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFT 555 (593)
Q Consensus 476 v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~ 555 (593)
++... .+|. ...+..+++|++||+.+++.. .++.++++|.++|+++.|++++|.++++
T Consensus 93 v~~~~--~~g~-----------~~~~~~~~~G~~fGe~~~l~~---------~~~~~~v~A~~~~~v~~i~~~~~~~l~~ 150 (187)
T 3gyd_A 93 VIKDI--PNKG-----------IQTIAKVGAGAIIGEMSMIDG---------MPRSASCVASLPTDFAVLSRDALYQLLA 150 (187)
T ss_dssp EEEEE--TTTE-----------EEEEEEEETTCEESHHHHHHC---------CCCSSEEEEEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEC--CCCC-----------eEEEEEccCCCeeeeHHHhCC---------CCeeEEEEECCCeEEEEEcHHHHHHHHH
Confidence 99831 3443 257789999999999987521 1678999999999999999999999999
Q ss_pred hchhhhhhh
Q 007679 556 EHEISGSTK 564 (593)
Q Consensus 556 ~~P~l~~~~ 564 (593)
++|++....
T Consensus 151 ~~p~~~~~l 159 (187)
T 3gyd_A 151 NMPKLGNKV 159 (187)
T ss_dssp HCHHHHHHH
T ss_pred HChHHHHHH
Confidence 999997655
No 14
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.62 E-value=7e-16 Score=137.61 Aligned_cols=93 Identities=5% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhHhhcCCC
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKEMSVRMQEINEWMPIEKL 376 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~~~~~~~~i~~~m~~~~l 376 (593)
.|..|+||+++|||||||||++|.|..|+++++++|++|.+++|+++|.+++.+.+......+.++.....+...+..++
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL 122 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 47899999999999999999999999999999999999999999999999999877665554444333333334445666
Q ss_pred CHHHHHHHHHHHH
Q 007679 377 SQSVQQQLKIYQR 389 (593)
Q Consensus 377 p~~L~~rv~~y~~ 389 (593)
+++.+..+++|.+
T Consensus 123 ~~~~i~~l~~~l~ 135 (137)
T 4h33_A 123 TKEEIAVVEQFLT 135 (137)
T ss_dssp -------------
T ss_pred cHHHHHHHHHHHh
Confidence 7777667766654
No 15
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*
Probab=99.62 E-value=3.1e-15 Score=136.44 Aligned_cols=118 Identities=13% Similarity=0.223 Sum_probs=105.5
Q ss_pred HHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcc
Q 007679 419 LCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNM 498 (593)
Q Consensus 419 ~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~ 498 (593)
...+.++++|+|.+++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++. +|.
T Consensus 35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-----~~~------------ 97 (154)
T 3pna_A 35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-----NNE------------ 97 (154)
T ss_dssp HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE-----TTE------------
T ss_pred HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE-----CCE------------
Confidence 346788999999999999999999999999999999999999999999999999999998 443
Q ss_pred ccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007679 499 TKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 499 ~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
.+..+++|++||+.+++.. .++.++++|.++|+++.|++++|.++++++|.++.+
T Consensus 98 -~~~~~~~G~~fGe~~~~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~ 152 (154)
T 3pna_A 98 -WATSVGEGGSFGELALIYG---------TPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK 152 (154)
T ss_dssp -EEEEECTTCEECCHHHHHC---------CCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred -EEEEecCCCEeeehHhhcC---------CCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence 6678999999999987632 167899999999999999999999999999998654
No 16
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A
Probab=99.61 E-value=5e-15 Score=132.00 Aligned_cols=115 Identities=23% Similarity=0.290 Sum_probs=103.8
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++++|+|.+++++.++.++..++...|.+|+.|+++||.++.+|||.+|.|+++. .+ .
T Consensus 10 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~~-~-------------- 70 (138)
T 1vp6_A 10 WQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT----PN-P-------------- 70 (138)
T ss_dssp HHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECS----SS-C--------------
T ss_pred HHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEe----CC-c--------------
Confidence 5789999999999999999999999999999999999999999999999999999987 22 2
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
..+++|++||+.+++.. .++..+++|.++|+++.|++++|.++++++|++....
T Consensus 71 -~~~~~G~~~G~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~ 124 (138)
T 1vp6_A 71 -VELGPGAFFGEMALISG---------EPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIF 124 (138)
T ss_dssp -EEECTTCEECHHHHHHC---------CCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred -ceECCCCEeeehHhccC---------CCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHH
Confidence 47899999999987532 1567899999999999999999999999999997665
No 17
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}
Probab=99.61 E-value=3.6e-15 Score=134.48 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=106.9
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++++|+|.+++++.++.++..++...|.+|+.|+++|+.++.+|||.+|.|+++.. ..+|. ...
T Consensus 4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~g~-----------~~~ 70 (149)
T 2pqq_A 4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRT--SPDGR-----------ENM 70 (149)
T ss_dssp GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEE--CTTSS-----------EEE
T ss_pred HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEE--CCCCc-----------EEE
Confidence 35688999999999999999999999999999999999999999999999999999982 12333 257
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+++|++||+.+++.. .++..+++|.++|+++.|++++|.++++++|++....
T Consensus 71 ~~~~~~g~~~G~~~~~~~---------~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~ 125 (149)
T 2pqq_A 71 LAVVGPSELIGELSLFDP---------GPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATAL 125 (149)
T ss_dssp EEEECTTCEESGGGGTSC---------EECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHH
T ss_pred EEEcCCcCEechHHhcCC---------CCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHH
Confidence 789999999999876421 2678899999999999999999999999999997665
No 18
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=99.61 E-value=1.1e-14 Score=140.35 Aligned_cols=119 Identities=17% Similarity=0.262 Sum_probs=103.0
Q ss_pred hhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccccee
Q 007679 424 LKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDH 503 (593)
Q Consensus 424 l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~ 503 (593)
|+++|+|.+++++.++.++..++...|++|+.|+++||.++.+|||.+|.|+++.. ..+|. ...+..
T Consensus 1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~g~-----------~~~~~~ 67 (216)
T 4ev0_A 1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRT--HLGGQ-----------ERTLAL 67 (216)
T ss_dssp ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEE--CSSSC-----------EEEEEE
T ss_pred CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEE--CCCCC-----------EEEEEE
Confidence 46899999999999999999999999999999999999999999999999999982 13443 257789
Q ss_pred cCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 504 LADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 504 l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+++|++||+.+++.. .++.++++|.++|+++.|++++|.++++++|++....
T Consensus 68 ~~~g~~~G~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 119 (216)
T 4ev0_A 68 LGPGELFGEMSLLDE---------GERSASAVAVEDTELLALFREDYLALIRRLPLVAHNL 119 (216)
T ss_dssp ECTTCEECHHHHHHC---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred ecCCCEEeehhhcCC---------CCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHH
Confidence 999999999877521 1578899999999999999999999999999987655
No 19
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.60 E-value=1.2e-14 Score=131.60 Aligned_cols=87 Identities=14% Similarity=0.250 Sum_probs=71.5
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHh----hchhHHHHHHHHHH
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQM------YLES----KALKSKEMSVRMQE 366 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~------i~~~----~~~~~~~~~~~~~~ 366 (593)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..+++++++.+++ +... .+....+..+++++
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~ 131 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEA 131 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999999886 3322 34555667788999
Q ss_pred HHhHhhcCCCCHHHHHH
Q 007679 367 INEWMPIEKLSQSVQQQ 383 (593)
Q Consensus 367 i~~~m~~~~lp~~L~~r 383 (593)
+++++++++.|++|+.|
T Consensus 132 i~~~~~~~~~~~~L~~R 148 (148)
T 3vou_A 132 IEKKLAEHSRQGSLVPR 148 (148)
T ss_dssp HHHHHHHHTTC------
T ss_pred HHHHHHhcCCCcCCCCC
Confidence 99999999999999876
No 20
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=99.60 E-value=5.6e-15 Score=139.95 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=106.1
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
..+++.++.|.+++++.++.++..++.+.|++|+.|+++||.++.+|||.+|.|+++.. ..+|. +..
T Consensus 6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~--~~~G~-----------e~~ 72 (194)
T 3dn7_A 6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFI--DEKGI-----------EQT 72 (194)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE--CTTSC-----------EEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEE--CCCCC-----------EEE
Confidence 45678899999999999999999999999999999999999999999999999999982 13443 357
Q ss_pred ceecCCCCeecch-hHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 MDHLADGDFWGEE-LVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~-~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+++|++|||. +++. . .++.++++|.++|+++.|++++|.++++++|++....
T Consensus 73 ~~~~~~g~~~ge~~~~~~---~------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 128 (194)
T 3dn7_A 73 TQFAIENWWLSDYMAFQK---Q------QPADFYIQSVENCELLSITYTEQENLFERIPALERYF 128 (194)
T ss_dssp EEEEETTCEECCHHHHHH---T------CBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHH
T ss_pred EEEccCCcEEeehHHHhc---C------CCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHH
Confidence 7889999999987 4431 1 1678899999999999999999999999999987655
No 21
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}
Probab=99.59 E-value=7.3e-15 Score=133.33 Aligned_cols=123 Identities=16% Similarity=0.228 Sum_probs=105.5
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++++++|..++++.++.++..++...|.+|++|+++|+.++.+|||.+|.|+++.. ..+|. ...
T Consensus 11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~g~-----------~~~ 77 (154)
T 2z69_A 11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRL--TPEGQ-----------EKI 77 (154)
T ss_dssp HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC--CC----------------C
T ss_pred HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEE--CCCCC-----------EEE
Confidence 46789999999999999999999999999999999999999999999999999999972 12333 257
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+++|++||+.+++. +.+++.++++|.++|+++.|++++|.++++++|++....
T Consensus 78 ~~~~~~G~~~G~~~~~~--------~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l 133 (154)
T 2z69_A 78 LEVTNERNTFAEAMMFM--------DTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 133 (154)
T ss_dssp CEEECTTEEESGGGGGS--------SCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHH
T ss_pred EEEccCCCeeccHhhcc--------CCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHH
Confidence 78999999999998642 111278999999999999999999999999999997655
No 22
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.59 E-value=3.7e-15 Score=151.35 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=120.4
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeee
Q 007679 402 STLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKE 481 (593)
Q Consensus 402 ~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~ 481 (593)
....++|+..|.+...+...+.++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|||.+|.|++..
T Consensus 19 ~~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~--- 95 (299)
T 3shr_A 19 GSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK--- 95 (299)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---
T ss_pred cccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999966
Q ss_pred ccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhh
Q 007679 482 RINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISG 561 (593)
Q Consensus 482 ~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~ 561 (593)
+|. .+..+.+|++|||.+++.. .++.++++|.++|+++.|++++|.+++..+|..+
T Consensus 96 --~g~-------------~~~~~~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~ 151 (299)
T 3shr_A 96 --EGV-------------KLCTMGPGKVFGELAILYN---------CTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIK 151 (299)
T ss_dssp --TTE-------------EEEEECTTCEESCSGGGTT---------TBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHH
T ss_pred --CCE-------------EEEEeCCCCeeeHhHHhcC---------CCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHH
Confidence 443 6788999999999987532 2789999999999999999999999999999865
Q ss_pred h
Q 007679 562 S 562 (593)
Q Consensus 562 ~ 562 (593)
.
T Consensus 152 ~ 152 (299)
T 3shr_A 152 H 152 (299)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=99.56 E-value=4.8e-14 Score=137.90 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=109.4
Q ss_pred HHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcc
Q 007679 419 LCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNM 498 (593)
Q Consensus 419 ~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~ 498 (593)
...+.++++|+|.+++++.++.++..++...|.+|+.|+++|+.++.+|||.+|.|+++.. ..+|. .
T Consensus 8 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--~~~G~-----------~ 74 (237)
T 3fx3_A 8 AQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRM--TPTGS-----------E 74 (237)
T ss_dssp HHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEE--CTTSC-----------E
T ss_pred HHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEE--CCCCC-----------E
Confidence 3467899999999999999999999999999999999999999999999999999999982 13443 3
Q ss_pred ccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 499 TKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 499 ~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
..+..+++|++||+.+++.. .++.++++|.++|+++.|++++|.++++++|++....
T Consensus 75 ~~~~~~~~G~~~G~~~~~~~---------~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 131 (237)
T 3fx3_A 75 AVVSVFTRGESFGEAVALRN---------TPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISI 131 (237)
T ss_dssp EEEEEEETTEEECHHHHHHT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred EEEEEeCCCCEechHHHhcC---------CCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 57889999999999987521 1678899999999999999999999999999987655
No 24
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.55 E-value=2.4e-14 Score=125.07 Aligned_cols=60 Identities=7% Similarity=0.275 Sum_probs=56.2
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKAL 355 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~ 355 (593)
..|..|+||+++|+|||||||++|.|..+++++++.+++|..++|+.+|.+++.+.+..+
T Consensus 60 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 60 ITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999876543
No 25
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=99.55 E-value=1.4e-14 Score=140.82 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=107.3
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++++|+|.+++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++.. ..+|. ...
T Consensus 5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--~~~g~-----------~~~ 71 (227)
T 3d0s_A 5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRR--APDGR-----------ENL 71 (227)
T ss_dssp HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEE--CTTSC-----------EEE
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEE--CCCCc-----------EEE
Confidence 45789999999999999999999999999999999999999999999999999999982 12443 257
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+++|++||+.+++. . .++.++++|.++|+++.|++++|.++++++|++....
T Consensus 72 ~~~~~~G~~~G~~~~~~---~------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 126 (227)
T 3d0s_A 72 LTIMGPSDMFGELSIFD---P------GPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQL 126 (227)
T ss_dssp EEEECTTCEESCHHHHS---C------SCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHH
T ss_pred EEEecCCCEEeeHHHcC---C------CCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHH
Confidence 78999999999998752 1 1678999999999999999999999999999986554
No 26
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=99.54 E-value=2.2e-14 Score=139.28 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=106.7
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++++|+|.+++++.++.++..++...|++|+.|+++||.++.+|||.+|.|+++.. ..+|. ...
T Consensus 8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~G~-----------~~~ 74 (227)
T 3dkw_A 8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRL--TPEGQ-----------EKI 74 (227)
T ss_dssp HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBC--CGGGC-----------CBC
T ss_pred HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEE--CCCCC-----------EEE
Confidence 46789999999999999999999999999999999999999999999999999999872 12333 257
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCC-cceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 MDHLADGDFWGEELVAWALYNRSLSNIPV-STRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~-r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+++|++||+.+++.. .+ +.++++|.++|+++.|++++|.++++++|++....
T Consensus 75 ~~~~~~g~~~G~~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 130 (227)
T 3dkw_A 75 LEVTNERNTFAEAMMFMD---------TPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 130 (227)
T ss_dssp CCEECTTEEESCTTTTTT---------CSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHH
T ss_pred EEEcCCCCEeeeHHhcCC---------CCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 788999999999876421 14 78899999999999999999999999999987554
No 27
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=99.53 E-value=4.8e-14 Score=136.08 Aligned_cols=121 Identities=16% Similarity=0.137 Sum_probs=104.7
Q ss_pred HHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccc
Q 007679 422 ELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKM 501 (593)
Q Consensus 422 ~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i 501 (593)
++++++|+|.+++++.++.++..++...|++|++|+++||.++.+|||.+|.|+++.. ..+|. ...+
T Consensus 3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--~~~G~-----------~~~~ 69 (220)
T 3dv8_A 3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYIL--SDEGR-----------EITL 69 (220)
T ss_dssp --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEE--CTTSC-----------EEEE
T ss_pred chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEE--CCCCC-----------EEEE
Confidence 5788999999999999999999999999999999999999999999999999999972 13443 2577
Q ss_pred eecCCCCe--ecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 502 DHLADGDF--WGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 502 ~~l~~G~~--FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
..+++|++ ||+.+++. ..++..+++|.++|+++.|++++|.++++++|++....
T Consensus 70 ~~~~~G~~~~~g~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~ 125 (220)
T 3dv8_A 70 YRLFDMDMCLLSASCIMR---------SIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYT 125 (220)
T ss_dssp EEECTTCEESGGGGGGCT---------TCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred EecCCCCeeehhHHHHhC---------CCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHH
Confidence 88999999 68886631 12678999999999999999999999999999987655
No 28
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}
Probab=99.53 E-value=4.3e-15 Score=132.03 Aligned_cols=124 Identities=17% Similarity=0.222 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEec-CCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccc
Q 007679 411 LIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYF-KHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANT 489 (593)
Q Consensus 411 Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~-~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~ 489 (593)
.|.+-..+...+.++++++|..++++.++.++..++.+.|. +|++|+++||.++.+|||.+|.|+++. .+|.
T Consensus 5 ~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~----~~g~--- 77 (134)
T 2d93_A 5 SSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH----PDGK--- 77 (134)
T ss_dssp CCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC----SSSC---
T ss_pred hcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc----CCCc---
Confidence 33333334446778999999999999999999999999999 999999999999999999999999997 5664
Q ss_pred cccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEE-EEeceEEEEEECHHHHHHHHHhchhhh
Q 007679 490 DYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTV-QTLTDVEGFVLTAEDLKSVFTEHEISG 561 (593)
Q Consensus 490 ~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv-~A~~~~~l~~Ls~~df~~ll~~~P~l~ 561 (593)
. ..+++|++||+.+++.. .++.+++ +|.++|+++.|++++|.++++++++-.
T Consensus 78 ----------~-~~l~~G~~fG~~~~~~~---------~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~~~ 130 (134)
T 2d93_A 78 ----------V-ENLFMGNSFGITPTLDK---------QYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEKSG 130 (134)
T ss_dssp ----------E-EEECTTCEESCCSSSCC---------EECCSEEEESSSSEEEEEEEHHHHHHHSSCCSSSS
T ss_pred ----------E-EEecCCCccChhHhcCC---------CcceeEEEEEecceEEEEEeHHHHHHHHHHHHhcc
Confidence 2 56899999999876421 2556778 999999999999999999999988753
No 29
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}
Probab=99.53 E-value=9.4e-14 Score=140.95 Aligned_cols=126 Identities=24% Similarity=0.340 Sum_probs=109.9
Q ss_pred HHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCc
Q 007679 418 ELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNN 497 (593)
Q Consensus 418 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 497 (593)
..+...++++++|..++++.+..++..++...|.+|+.|+++||.++.+|+|.+|.|+++. .+.. .++
T Consensus 153 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~----~~~~--------~g~ 220 (299)
T 3shr_A 153 TEYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTR----EDSP--------NED 220 (299)
T ss_dssp HHHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEE----CCSS--------SCC
T ss_pred HHHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEE----ecCC--------CCc
Confidence 4457789999999999999999999999999999999999999999999999999999998 2211 112
Q ss_pred cccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 498 MTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 498 ~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
...+..+++|++|||.+++.. .++.++++|.++|+++.|++++|.++++++|++....
T Consensus 221 ~~~~~~l~~G~~fGe~~ll~~---------~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~ 278 (299)
T 3shr_A 221 PVFLRTLGKGDWFGEKALQGE---------DVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKA 278 (299)
T ss_dssp CEEEEEEETTCEECGGGGSSS---------EECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHH
T ss_pred ceEEEEcCCCCEeChHHHhCC---------CCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHH
Confidence 357889999999999987421 2678999999999999999999999999999997665
No 30
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=99.53 E-value=8.3e-14 Score=135.76 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=102.0
Q ss_pred hcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceec
Q 007679 425 KSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHL 504 (593)
Q Consensus 425 ~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l 504 (593)
.++|+|.+++++.++.++..++...|.||++|+++||.++.+|||.+|.|+++.. ..+|. ...+..+
T Consensus 13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~--~~~g~-----------~~~~~~~ 79 (232)
T 2gau_A 13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILRE--GVYGR-----------FHISRIV 79 (232)
T ss_dssp GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-------C-----------CCEEEEE
T ss_pred cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEE--CCCCC-----------EEEEEEe
Confidence 3679999999999999999999999999999999999999999999999999972 12343 2578899
Q ss_pred CCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 505 ADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 505 ~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
++|++||+.+++.. .++..+++|.++|+++.|++++|.++++++|++....
T Consensus 80 ~~G~~~G~~~~~~~---------~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 130 (232)
T 2gau_A 80 KPGQFFGMRPYFAE---------ETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYF 130 (232)
T ss_dssp CTTCEESHHHHHHT---------SCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred CCCCEeeeehhhCC---------CCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHH
Confidence 99999999987531 1578899999999999999999999999999986554
No 31
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*
Probab=99.52 E-value=7.8e-14 Score=143.85 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=106.8
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++++|+|++++++.+..++..++.+.|.+|++|+++||.++.+|||.+|.|+++.. ..+|. ..
T Consensus 12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--~~~g~------------~~ 77 (333)
T 4ava_A 12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHV--GDDGV------------AI 77 (333)
T ss_dssp HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEE--CTTCC------------EE
T ss_pred HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEE--CCCCc------------EE
Confidence 46789999999999999999999999999999999999999999999999999999982 12332 37
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+++|++|||.+++.. .++.++++|.++|+++.|++++|.+++ ++|++....
T Consensus 78 ~~~~~~G~~fGe~~l~~~---------~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~ 131 (333)
T 4ava_A 78 IARALPGMIVGEIALLRD---------SPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERL 131 (333)
T ss_dssp EEEECTTCEESHHHHHHT---------CBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHH
T ss_pred EEEecCCCEeeHHHhcCC---------CCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHH
Confidence 788999999999987632 167899999999999999999999999 999997655
No 32
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.5e-14 Score=138.59 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=106.1
Q ss_pred HHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcc
Q 007679 419 LCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNM 498 (593)
Q Consensus 419 ~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~ 498 (593)
++...++++++|..+++..+..++..++.+.|.+|+.|+++||.++.+|+|.+|.|+++. .+.+
T Consensus 122 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~----~~~~------------ 185 (246)
T 3of1_A 122 MYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSK----KGQG------------ 185 (246)
T ss_dssp HSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEE----TTTE------------
T ss_pred HHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEE----cCCc------------
Confidence 345678889999999999999999999999999999999999999999999999999998 3321
Q ss_pred ccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007679 499 TKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 499 ~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
.+..+++|++|||.+++.. .++.++++|.++|+++.|++++|.+++..+|++..+
T Consensus 186 -~~~~l~~g~~fGe~~~~~~---------~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~~~ 240 (246)
T 3of1_A 186 -VINKLKDHDYFGEVALLND---------LPRQATVTATKRTKVATLGKSGFQRLLGPAVDVLKL 240 (246)
T ss_dssp -EEEEEETTCEECHHHHHHT---------CBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHHHH
T ss_pred -eEEEcCCCCcccHHHHhCC---------CCcccEEEECCCEEEEEEeHHHHHHHhccHHHHHhc
Confidence 6788999999999988632 167899999999999999999999999999998543
No 33
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=99.52 E-value=1.4e-13 Score=134.09 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=106.7
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
.+.++++|+|.+++++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++.. ..+|. ...
T Consensus 5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--~~~g~-----------~~~ 71 (231)
T 3e97_A 5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRV--SLGGR-----------ERV 71 (231)
T ss_dssp HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEE--CC--C-----------EEE
T ss_pred HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEE--CCCCc-----------eEE
Confidence 46789999999999999999999999999999999999999999999999999999982 12443 257
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+..+++|++||+.+++. ..++.++++|.++|+++.|++++|.++++++|++....
T Consensus 72 ~~~~~~g~~~G~~~~~~---------~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 126 (231)
T 3e97_A 72 LGDIYAPGVVGETAVLA---------HQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNL 126 (231)
T ss_dssp EEEEESSEEESTTTTTC---------CCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHH
T ss_pred EEecCCCCEEeeHHHhC---------CCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 78999999999997642 12678999999999999999999999999999987654
No 34
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=99.51 E-value=1.4e-13 Score=133.72 Aligned_cols=123 Identities=15% Similarity=0.169 Sum_probs=96.7
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcccc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTK 500 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~ 500 (593)
...+++.++|.+++++.++.++..++...|++|+.|+++||.++.+|||.+|.|+++.. ..+|. ...
T Consensus 10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~G~-----------~~~ 76 (230)
T 3iwz_A 10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAE--EDDDR-----------ELV 76 (230)
T ss_dssp ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEE--CTTSC-----------EEE
T ss_pred hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEE--CCCCC-----------EEE
Confidence 45688899999999999999999999999999999999999999999999999999972 13443 357
Q ss_pred ceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhc-----hhhhhhh
Q 007679 501 MDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEH-----EISGSTK 564 (593)
Q Consensus 501 i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~-----P~l~~~~ 564 (593)
+..+++|++||+.+++. ..+++.++++|.++|+++.|++++|.++++++ |++....
T Consensus 77 ~~~~~~g~~~G~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~ 137 (230)
T 3iwz_A 77 LGYFGSGEFVGEMGLFI--------ESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAI 137 (230)
T ss_dssp EEEECTTCEESCGGGTS--------CCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHH
T ss_pred EEEecCCCEEEehhhhc--------CCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHH
Confidence 88899999999997641 11257889999999999999999999999999 9986544
No 35
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}
Probab=99.51 E-value=7.4e-14 Score=137.03 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=105.4
Q ss_pred HHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccc
Q 007679 420 CLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMT 499 (593)
Q Consensus 420 ~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~ 499 (593)
..+.++++|+|++++++.++.++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. +|.
T Consensus 5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~-----~~~------------- 66 (246)
T 3of1_A 5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV-----NDN------------- 66 (246)
T ss_dssp HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES-----TTS-------------
T ss_pred HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE-----CCE-------------
Confidence 35788999999999999999999999999999999999999999999999999999987 443
Q ss_pred cceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhh
Q 007679 500 KMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGST 563 (593)
Q Consensus 500 ~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~ 563 (593)
.+..+++|++|||.+++.. .++.++++|.++|+++.|++++|.+++.++|..+..
T Consensus 67 ~~~~~~~g~~fGe~~l~~~---------~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~ 121 (246)
T 3of1_A 67 KVNSSGPGSSFGELALMYN---------SPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRL 121 (246)
T ss_dssp CCEEECTTCEECHHHHHHT---------CCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHH
T ss_pred EEEecCCCCeeehhHHhcC---------CCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHH
Confidence 4688999999999988642 167899999999999999999999999999976543
No 36
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=99.50 E-value=1.3e-13 Score=134.61 Aligned_cols=123 Identities=14% Similarity=0.120 Sum_probs=106.8
Q ss_pred HHHhhcCHhhhcCcHHHHHHHHhh--ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCcc
Q 007679 421 LELLKSVEEFKKLNEAILDALCDC--VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNM 498 (593)
Q Consensus 421 ~~~l~~i~~F~~~s~~~l~~L~~~--l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~ 498 (593)
...++++|+|.+++++.++.++.. ++...|.+|+.|+++||.++.+|||.+|.|+++.. ..+|. .
T Consensus 17 ~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~--~~~G~-----------~ 83 (232)
T 1zyb_A 17 FDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTN--AKENI-----------Y 83 (232)
T ss_dssp HTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE--CGGGS-----------C
T ss_pred HHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEE--CCCCC-----------E
Confidence 466889999999999999999998 99999999999999999999999999999999872 13443 2
Q ss_pred ccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 499 TKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 499 ~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
..+..+++|++||+.+++. ..+++.++++|.++|+++.|++++|.++++++|++....
T Consensus 84 ~~l~~~~~G~~fG~~~~~~--------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l 141 (232)
T 1zyb_A 84 TVIEQIEAPYLIEPQSLFG--------MNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNY 141 (232)
T ss_dssp EEEEEEESSEEECGGGGSS--------SCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHH
T ss_pred EEEEEccCCCeeeehHHhC--------CCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHH
Confidence 5778899999999997641 111378999999999999999999999999999987655
No 37
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.49 E-value=3e-13 Score=136.54 Aligned_cols=126 Identities=14% Similarity=0.204 Sum_probs=108.0
Q ss_pred HHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCc
Q 007679 418 ELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNN 497 (593)
Q Consensus 418 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 497 (593)
.+....++++++|..+++..+..++..++...|.+|+.|+++||.++.+|+|.+|.|++.... .+|+ +
T Consensus 153 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~--~~~~----------~ 220 (291)
T 2qcs_B 153 KMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRR--SENE----------E 220 (291)
T ss_dssp HHHHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEC--STTS----------C
T ss_pred HHHHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEec--CCCC----------c
Confidence 344567888999999999999999999999999999999999999999999999999998721 2222 1
Q ss_pred cccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 498 MTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 498 ~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
...+..+++|++|||.+++. ..++.++++|.++|+++.|++++|.+++..+|++..+.
T Consensus 221 ~~~~~~l~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~ 278 (291)
T 2qcs_B 221 FVEVGRLGPSDYFGEIALLM---------NRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRN 278 (291)
T ss_dssp EEEEEEECTTCEECSGGGTC---------CCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTS
T ss_pred cEEEEEeCCCCEecHHHHcC---------CCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHH
Confidence 24788999999999998742 12688999999999999999999999999999986544
No 38
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*
Probab=99.47 E-value=2.8e-13 Score=136.77 Aligned_cols=120 Identities=13% Similarity=0.202 Sum_probs=107.5
Q ss_pred HHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCc
Q 007679 418 ELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNN 497 (593)
Q Consensus 418 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 497 (593)
+...+.++++|+|.+++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|+++. +|.
T Consensus 35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-----~g~----------- 98 (291)
T 2qcs_B 35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV-----NNE----------- 98 (291)
T ss_dssp HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE-----TTE-----------
T ss_pred HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE-----CCe-----------
Confidence 3457889999999999999999999999999999999999999999999999999999998 443
Q ss_pred cccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 498 MTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 498 ~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
.+..+++|++|||.+++. ..++.++++|.++|+++.|++++|.+++..+|.+....
T Consensus 99 --~~~~l~~G~~fGe~~l~~---------~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 154 (291)
T 2qcs_B 99 --WATSVGEGGSFGELALIY---------GTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM 154 (291)
T ss_dssp --EEEEECTTCEECGGGGTC---------CCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred --EEEEcCCCCccchHHHhc---------CCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHH
Confidence 678999999999987742 12678999999999999999999999999999986443
No 39
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.46 E-value=2.3e-13 Score=121.89 Aligned_cols=60 Identities=8% Similarity=0.327 Sum_probs=55.2
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKAL 355 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~ 355 (593)
..|..|+||+++|+|||||||++|.|..+++++++.+++|.++++++++.+++.+.+...
T Consensus 39 ~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 39 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred CCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999998765443
No 40
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.45 E-value=3.7e-13 Score=143.21 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=109.4
Q ss_pred HHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccC
Q 007679 416 KHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDN 495 (593)
Q Consensus 416 ~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~ 495 (593)
..+...+.++++++|++++++.+..|+..++.+.|.+|++|+++||.++.+|+|.+|.|+++.. .+|.
T Consensus 139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~---~~G~--------- 206 (416)
T 3tnp_B 139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVK---CDGV--------- 206 (416)
T ss_dssp HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEE---CSSC---------
T ss_pred HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEe---cCCC---------
Confidence 3445578899999999999999999999999999999999999999999999999999999872 3443
Q ss_pred CccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhh
Q 007679 496 NNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGS 562 (593)
Q Consensus 496 ~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~ 562 (593)
...+..+++|++|||.+++.+ .++.++++|.++|+++.|++++|.+++.++|.++.
T Consensus 207 --~~~v~~l~~G~~fGe~all~~---------~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~ 262 (416)
T 3tnp_B 207 --GRCVGNYDNRGSFGELALMYN---------TPKAATITATSPGALWGLDRVTFRRIIVKNNAKKR 262 (416)
T ss_dssp --EEEEEEEESCCEECGGGGTSC---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHS
T ss_pred --EEEEEEecCCCEEeeHHHhcC---------CCcccEEEEccCeEEEEEeehhhhhhhhcchhHHH
Confidence 256788999999999987531 27899999999999999999999999999998754
No 41
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=99.44 E-value=9.6e-13 Score=125.91 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=96.7
Q ss_pred HhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCC
Q 007679 428 EEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADG 507 (593)
Q Consensus 428 ~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G 507 (593)
++++.+|++.++.++..++...|.+|+.|+++|+.++.+|||.+|.|+++.. ..+|. ...+..+++|
T Consensus 2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~g~-----------~~~~~~~~~g 68 (210)
T 3ryp_A 2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK--DEEGK-----------EMILSYLNQG 68 (210)
T ss_dssp -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE--CTTCC-----------EEEEEEEETT
T ss_pred cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEE--CCCCC-----------EEEEEEcCCC
Confidence 3567799999999999999999999999999999999999999999999972 13443 3577889999
Q ss_pred CeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 508 DFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 508 ~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
++||+.+++. ..+++.++++|.++|+++.|++++|.++++++|++....
T Consensus 69 ~~~G~~~~~~--------~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 117 (210)
T 3ryp_A 69 DFIGELGLFE--------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRL 117 (210)
T ss_dssp CEESCTTTTS--------TTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHH
T ss_pred CEeeeHHHhc--------CCCCceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 9999997642 112578899999999999999999999999999987554
No 42
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=99.44 E-value=4.6e-13 Score=129.42 Aligned_cols=113 Identities=12% Similarity=0.158 Sum_probs=100.3
Q ss_pred HHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccc
Q 007679 422 ELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKM 501 (593)
Q Consensus 422 ~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i 501 (593)
..++++|+|..++++.++.++..++...|.+|+.|+++||.++.+|||.+|.|+++.. .+|. ...+
T Consensus 4 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~---~~G~-----------~~~~ 69 (220)
T 2fmy_A 4 MRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLA---YEDK-----------EFTL 69 (220)
T ss_dssp TCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEE---CSSC-----------EEEE
T ss_pred hhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEEC---CCCC-----------EEEE
Confidence 4578899999999999999999999999999999999999999999999999999541 4454 2577
Q ss_pred eecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 502 DHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 502 ~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
..+++|++||+ ++.++++|.++|+++.|++++|.++++++|++....
T Consensus 70 ~~~~~G~~~G~----------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 116 (220)
T 2fmy_A 70 AILEAGDIFCT----------------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNM 116 (220)
T ss_dssp EEEETTCEEES----------------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHH
T ss_pred EEcCCCCEeCC----------------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 89999999998 136789999999999999999999999999986555
No 43
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.42 E-value=5.6e-13 Score=144.10 Aligned_cols=137 Identities=17% Similarity=0.171 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCC
Q 007679 407 LPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGS 486 (593)
Q Consensus 407 Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~ 486 (593)
.|+..|.+-..+...+.++++++|.+++++.+..++..++...|.+|++|+++||.++.+|+|.+|.|+++.. ..+|.
T Consensus 27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~--~~~g~ 104 (469)
T 1o7f_A 27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVS--ETSSH 104 (469)
T ss_dssp SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEC--SSSCG
T ss_pred CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEe--cCCCC
Confidence 4677777777778889999999999999999999999999999999999999999999999999999999982 12332
Q ss_pred ccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 487 ANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 487 ~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
++...+..+++|++|||.+ +.. .++.++++|.++|+++.|++++|.++++++|++....
T Consensus 105 ---------~~~~~~~~~~~G~~fGe~~-l~~---------~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l 163 (469)
T 1o7f_A 105 ---------QDAVTICTLGIGTAFGESI-LDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGL 163 (469)
T ss_dssp ---------GGCEEEEEECTTCEECGGG-GGT---------CBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTT
T ss_pred ---------CcceEEEEccCCCCcchhh-hCC---------CCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHH
Confidence 1125788999999999987 422 2678999999999999999999999999999976444
No 44
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=99.42 E-value=2.1e-12 Score=123.28 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=94.9
Q ss_pred CcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecc
Q 007679 433 LNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGE 512 (593)
Q Consensus 433 ~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe 512 (593)
+|++.++.++..++...|.+|++|+++||.++.+|||.+|.|+++.. ..+|. ...+..+++|++||+
T Consensus 1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~G~-----------~~~~~~~~~g~~~G~ 67 (207)
T 2oz6_A 1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIE--DDDGR-----------EMIIGYLNSGDFFGE 67 (207)
T ss_dssp CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEE--CTTSC-----------EEEEEEEETTCEESC
T ss_pred CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEE--CCCCC-----------EEEEEEcCCCCCccc
Confidence 57889999999999999999999999999999999999999999972 13443 257889999999999
Q ss_pred hhHHHhhcccccCCCC---CcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 513 ELVAWALYNRSLSNIP---VSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 513 ~~ll~~~~~~~~~~~~---~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
.+++.. .. ++.++++|.++|+++.|++++|.++++++|++....
T Consensus 68 ~~~~~~--------~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 114 (207)
T 2oz6_A 68 LGLFEK--------EGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTL 114 (207)
T ss_dssp TTTCC-------------CBCCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred HHHhcC--------CCCCCCcceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHH
Confidence 976421 11 468899999999999999999999999999987544
No 45
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=99.41 E-value=5.2e-13 Score=129.25 Aligned_cols=112 Identities=10% Similarity=0.022 Sum_probs=99.6
Q ss_pred HhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccce
Q 007679 423 LLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMD 502 (593)
Q Consensus 423 ~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~ 502 (593)
+++++|+|.+++++.++.++..++...|++|++|+++|+.++.+|||.+|.|+++.. .+|. ...+.
T Consensus 1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~---~~G~-----------~~~~~ 66 (222)
T 1ft9_A 1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLV---GEER-----------EISLF 66 (222)
T ss_dssp -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEE---ETTE-----------EEEEE
T ss_pred CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEEC---CCCC-----------EEEEE
Confidence 367899999999999999999999999999999999999999999999999999631 3554 25778
Q ss_pred ecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 503 HLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 503 ~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
.+++|++|| . ++.++++|.++|+++.|++++|.++++++|++....
T Consensus 67 ~~~~G~~fG-~---------------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 112 (222)
T 1ft9_A 67 YLTSGDMFC-M---------------HSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGL 112 (222)
T ss_dssp EEETTCEEE-S---------------CSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHH
T ss_pred EcCCCCEec-C---------------CCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHH
Confidence 999999999 1 568899999999999999999999999999987655
No 46
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.41 E-value=2.7e-13 Score=142.65 Aligned_cols=120 Identities=13% Similarity=0.219 Sum_probs=107.7
Q ss_pred HHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCc
Q 007679 418 ELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNN 497 (593)
Q Consensus 418 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 497 (593)
+...+.++++++|++++++.+..++..++.+.|.+|++|+++||.++.+|+|.+|.|+++. +|.
T Consensus 126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~-----~~~----------- 189 (381)
T 4din_B 126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV-----NGE----------- 189 (381)
T ss_dssp HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE-----TTE-----------
T ss_pred HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE-----CCe-----------
Confidence 4456889999999999999999999999999999999999999999999999999999998 443
Q ss_pred cccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 498 MTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 498 ~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
.+..+++|++|||.+++.+ .++.++++|.++|+++.|++++|.+++.++|.++...
T Consensus 190 --~v~~l~~G~~fGe~all~~---------~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~ 245 (381)
T 4din_B 190 --WVTNISEGGSFGELALIYG---------TPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKM 245 (381)
T ss_dssp --EEEEEESSCCBCGGGGTSC---------CBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred --EeeeCCCCCEEEchHHhcC---------CCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHH
Confidence 6678999999999987532 2778999999999999999999999999999886543
No 47
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}
Probab=99.40 E-value=3.9e-13 Score=141.48 Aligned_cols=126 Identities=13% Similarity=0.182 Sum_probs=108.4
Q ss_pred HHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCc
Q 007679 418 ELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNN 497 (593)
Q Consensus 418 ~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 497 (593)
.++...++++++|..+++..+..++..++...|.+|++|+++||.++.+|||.+|.|+++... .+|+ +
T Consensus 244 ~~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~--~~~~----------~ 311 (381)
T 4din_B 244 KMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRR--SPNE----------E 311 (381)
T ss_dssp HHHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCS--SSSS----------C
T ss_pred HHHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEec--CCCC----------c
Confidence 445678889999999999999999999999999999999999999999999999999999821 1221 1
Q ss_pred cccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 498 MTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 498 ~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
...+..+++|++|||.+++. ..++.++++|.++|+++.|++++|.+++..+|++..+.
T Consensus 312 ~~~v~~l~~Gd~fGe~all~---------~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~ 369 (381)
T 4din_B 312 YVEVGRLGPSDYFGEIALLL---------NRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRN 369 (381)
T ss_dssp CCEEEEECTTCEECTTGGGS---------CCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTT
T ss_pred eEEEEEeCCCCEechHHHhC---------CCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHH
Confidence 24678999999999998752 12788999999999999999999999999999985443
No 48
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=99.38 E-value=3.8e-12 Score=126.52 Aligned_cols=113 Identities=14% Similarity=0.155 Sum_probs=94.9
Q ss_pred hcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCee
Q 007679 431 KKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFW 510 (593)
Q Consensus 431 ~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~F 510 (593)
..++++.++.++..++...|.+|++|+++|+.++.+|||.+|.|+++.. ..+|. ...+..+++|++|
T Consensus 55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~--~~~G~-----------e~~~~~~~~G~~~ 121 (260)
T 3kcc_A 55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIK--DEEGK-----------EMILSYLNQGDFI 121 (260)
T ss_dssp ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEE--CTTCC-----------EEEEEEEETTCEE
T ss_pred CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEE--CCCCC-----------EEEEEEcCCCCEE
Confidence 4589999999999999999999999999999999999999999999972 13443 2578899999999
Q ss_pred cchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 511 GEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 511 Ge~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
|+.+++. ..+++.++++|.++|+++.|++++|.++++++|++....
T Consensus 122 Ge~~~~~--------~~~~~~~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l 167 (260)
T 3kcc_A 122 GELGLFE--------EGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRL 167 (260)
T ss_dssp SCTTTTS--------TTCBCCSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHH
T ss_pred eehHHhC--------CCCCCceEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 9997642 112578899999999999999999999999999987554
No 49
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Probab=99.37 E-value=1.7e-12 Score=140.31 Aligned_cols=120 Identities=12% Similarity=0.159 Sum_probs=103.3
Q ss_pred HHHHHhhcCHhhhcCcHHHHHHHHhhccEE-EecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCc
Q 007679 419 LCLELLKSVEEFKKLNEAILDALCDCVKMT-FYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNN 497 (593)
Q Consensus 419 ~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~-~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 497 (593)
...+.++++++|.+++++.+..++..++.. .|.+|++|+++||.++.+|||.+|.|+++. ++.
T Consensus 334 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~-----~~~----------- 397 (469)
T 1o7f_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI-----YGK----------- 397 (469)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE-----TTT-----------
T ss_pred HHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE-----cCC-----------
Confidence 345778999999999999999999999854 899999999999999999999999999998 232
Q ss_pred cccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEec-eEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 498 MTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLT-DVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 498 ~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~-~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
..+..+++|++|||.+++. ..++.++++|.+ +|+++.|++++|.+++.++|++..+.
T Consensus 398 -~~~~~l~~G~~fGe~~ll~---------~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l 455 (469)
T 1o7f_A 398 -GVVCTLHEGDDFGKLALVN---------DAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL 455 (469)
T ss_dssp -EEEEEEETTCEECGGGGTC---------CSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC----
T ss_pred -eeEEEecCCCEEEEehhhc---------CCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHH
Confidence 2678999999999998742 127899999998 79999999999999999999987655
No 50
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.36 E-value=1.7e-12 Score=153.22 Aligned_cols=138 Identities=18% Similarity=0.209 Sum_probs=112.3
Q ss_pred HHHhhCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeee
Q 007679 402 STLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKE 481 (593)
Q Consensus 402 ~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~ 481 (593)
..|+.-| .-|.+=-.++....|+++++|+++++..+.+|+..|+.+.|.+|++|+++||.++++|+|.+|.|+|+..+
T Consensus 23 ~~L~K~p-~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~- 100 (999)
T 4f7z_A 23 ACLDKRP-LERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSE- 100 (999)
T ss_dssp HHHHSCS-SSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECS-
T ss_pred HHhcCCc-ccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEec-
Confidence 4455544 33433333444578999999999999999999999999999999999999999999999999999999831
Q ss_pred ccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhh
Q 007679 482 RINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISG 561 (593)
Q Consensus 482 ~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~ 561 (593)
.++ .+....+..+++|+.||| +++++ .+|++|++|.++|++++|++++|+.++.+||+..
T Consensus 101 -~~~---------~~~~~~v~~l~~G~sFGE-all~n---------~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~ 160 (999)
T 4f7z_A 101 -TSS---------HQDAVTICTLGIGTAFGE-SILDN---------TPRHATIVTRESSELLRIEQEDFKALWEKYRQYM 160 (999)
T ss_dssp -SSC---------TTSCEEEEEEETTCEECG-GGGGT---------CCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -CCC---------CCCceeEEEecCCcchhh-hhccC---------CCcceEEEeccceEEEEEEHHHHHHHHHhChHHH
Confidence 111 122357889999999999 65432 2789999999999999999999999999999853
No 51
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*
Probab=99.34 E-value=3.7e-12 Score=135.45 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=105.5
Q ss_pred HHHHhhcCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccc
Q 007679 420 CLELLKSVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMT 499 (593)
Q Consensus 420 ~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~ 499 (593)
+..+++++++|..++++.+..++..++...|.+|++|+++|+.++.+|||.+|.|+++... .+.. -...++..
T Consensus 265 ~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~--~~~~-----~~~~g~~~ 337 (416)
T 3tnp_B 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKR--KGKS-----EVEENGAV 337 (416)
T ss_dssp SSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC-------------------C
T ss_pred HHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEec--CCcc-----cccCCcee
Confidence 3456778899999999999999999999999999999999999999999999999999721 1100 00012235
Q ss_pred cceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 500 KMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 500 ~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
.+..+++|++|||.+++. ..++.++++|.++|+++.|++++|.+++..+|++....
T Consensus 338 ~l~~l~~G~~fGE~all~---------~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~ 393 (416)
T 3tnp_B 338 EIARCFRGQYFGELALVT---------NKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRN 393 (416)
T ss_dssp EEEEECTTCEESGGGGTC---------CSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC
T ss_pred EEEEeCCCCEecHHHHhC---------CCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHH
Confidence 788999999999998752 12789999999999999999999999999999986544
No 52
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=99.34 E-value=1.9e-12 Score=124.53 Aligned_cols=117 Identities=15% Similarity=0.132 Sum_probs=93.3
Q ss_pred CHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCC
Q 007679 427 VEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLAD 506 (593)
Q Consensus 427 i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~ 506 (593)
-|.|+..++...+.+...++...|.+|+.|+.+||.++.+|||.+|.|+++.. ..+|. ...+..+++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~--~~~G~-----------~~~~~~~~~ 70 (213)
T 1o5l_A 4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHV--SENGK-----------TLEIDEIKP 70 (213)
T ss_dssp ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEE--CTTSC-----------EEEEEEECS
T ss_pred cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEE--CCCCC-----------EEEEEEecC
Confidence 36788888999999999999999999999999999999999999999999972 13443 257789999
Q ss_pred CCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 507 GDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 507 G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
|++||+.+++. ...++.++++|.++|+++.|++++|.++++++|++....
T Consensus 71 G~~~G~~~~~~--------~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l 120 (213)
T 1o5l_A 71 VQIIASGFIFS--------SEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFF 120 (213)
T ss_dssp SEESSGGGTTS--------SSCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred CCEeeeHHHhc--------CCCCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 99999997631 112568899999999999999999999999999986544
No 53
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.34 E-value=1.1e-11 Score=106.58 Aligned_cols=60 Identities=12% Similarity=0.294 Sum_probs=53.2
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALK 356 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~ 356 (593)
.|..|+||+++|+|||||||++|.|..+++++++.+++|..++++.++.+++.++.....
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~~~~ 108 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999999999999999988654433
No 54
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.31 E-value=1.2e-12 Score=110.75 Aligned_cols=60 Identities=7% Similarity=0.122 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKAL 355 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~ 355 (593)
..|..|+||+++|+|||||||++|.+..+++++++.+++|..+++++++.+++.+.+..+
T Consensus 39 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 39 ISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp CCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred ccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999998876543
No 55
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=99.28 E-value=8.2e-12 Score=140.57 Aligned_cols=135 Identities=13% Similarity=0.149 Sum_probs=112.6
Q ss_pred HHHHhhCCHHHHHHHHHHHHHHHhhcCHhhhcCcHHHHHHHHhhcc-EEEecCCCEEEcCCCCccEEEEEEEeEEEEEee
Q 007679 401 ESTLSSLPKELIRNIKHELCLELLKSVEEFKKLNEAILDALCDCVK-MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSS 479 (593)
Q Consensus 401 ~~il~~Lp~~Lr~~i~~~~~~~~l~~i~~F~~~s~~~l~~L~~~l~-~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~ 479 (593)
..++...| ..|.+-..+...+.++++++|.+++++.+..++..++ .+.|.+|++|+++||.++.+|||.+|.|+++.
T Consensus 12 r~iL~k~p-~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~- 89 (694)
T 3cf6_E 12 RMILRKPP-GQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI- 89 (694)
T ss_dssp HHHHHSCG-GGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred HHHHcCCh-hhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEE-
Confidence 34554433 3344444444577899999999999999999999998 78999999999999999999999999999998
Q ss_pred eeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEec-eEEEEEECHHHHHHHHHhch
Q 007679 480 KERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLT-DVEGFVLTAEDLKSVFTEHE 558 (593)
Q Consensus 480 ~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~-~~~l~~Ls~~df~~ll~~~P 558 (593)
. |. ..+..+++|++|||.+++.. .++.++++|.+ +|+++.|++++|.++++++|
T Consensus 90 ---~-g~------------~il~~l~~Gd~fGe~al~~~---------~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p 144 (694)
T 3cf6_E 90 ---Y-GK------------GVVCTLHEGDDFGKLALVND---------APRAASIVLREDNCHFLRVDKEDFNRILRDVE 144 (694)
T ss_dssp ---T-TT------------EEEEEEETTCEECHHHHHHT---------CBCSSEEEECSSSEEEEEEEHHHHHHHTTTTC
T ss_pred ---e-CC------------EEEEEeCCCCEeehHHHhCC---------CCceEEEEEeeCceEEEEEeHHHHHHHHHHCH
Confidence 2 32 37789999999999987522 15789999999 59999999999999999999
Q ss_pred hhhh
Q 007679 559 ISGS 562 (593)
Q Consensus 559 ~l~~ 562 (593)
.+..
T Consensus 145 ~l~~ 148 (694)
T 3cf6_E 145 ANTV 148 (694)
T ss_dssp CCCE
T ss_pred HHHH
Confidence 9844
No 56
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=99.26 E-value=7.6e-12 Score=123.41 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=97.0
Q ss_pred cCHhhhcCcHHHHHHHHhhccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecC
Q 007679 426 SVEEFKKLNEAILDALCDCVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLA 505 (593)
Q Consensus 426 ~i~~F~~~s~~~l~~L~~~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~ 505 (593)
++..+..+|++.++.++..++...|.+|+.|+.+|+.++.+|||.+|.|+++.. ..+|. ...+..++
T Consensus 13 ~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~--~~~G~-----------~~~~~~~~ 79 (250)
T 3e6c_C 13 AIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDII--FEDGS-----------EKLLYYAG 79 (250)
T ss_dssp CSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEE--CTTSC-----------EEEEEEEC
T ss_pred hccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEE--CCCCC-----------EEEEEEec
Confidence 333348899999999999999999999999999999999999999999999982 13443 35778999
Q ss_pred CCCeecchhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 506 DGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 506 ~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+|++||+ .+ . .. +.++++|.++|+++.|++++|.++++++|++....
T Consensus 80 ~G~~~G~-~l----~------~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l 126 (250)
T 3e6c_C 80 GNSLIGK-LY----P------TG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEI 126 (250)
T ss_dssp TTCEECC-CS----C------CS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHH
T ss_pred CCCEEee-ec----C------CC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 9999999 32 1 12 57899999999999999999999999999986554
No 57
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=99.23 E-value=4.6e-11 Score=117.31 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=92.2
Q ss_pred HHHHHHHHhhcc---EEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 435 EAILDALCDCVK---MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 435 ~~~l~~L~~~l~---~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
+++++.|+.... .+.|.+|++|+.+|+.++.+|||.+|.|+++.. ..+|. ...+..+++|++||
T Consensus 30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~--~~~G~-----------~~~l~~~~~g~~~G 96 (243)
T 3la7_A 30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRV--YEAGE-----------EITVALLRENSVFG 96 (243)
T ss_dssp HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEE--CTTCC-----------EEEEEEECTTCEES
T ss_pred HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEE--CCCCC-----------EEEEEEecCCCEEc
Confidence 678888888888 999999999999999999999999999999972 13443 35788899999999
Q ss_pred chhHHHhhcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 512 EELVAWALYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 512 e~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
+.+++... ..++..+++|.++|+++.|++++|.++++++|++....
T Consensus 97 ~~~~~~~~-------~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l 142 (243)
T 3la7_A 97 VLSLLTGN-------KSDRFYHAVAFTPVELLSAPIEQVEQALKENPELSMLM 142 (243)
T ss_dssp CHHHHSSC-------CSBCCEEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHH
T ss_pred chHHhCCC-------CCcceEEEEEccceEEEEEcHHHHHHHHHHCHHHHHHH
Confidence 98875211 00245889999999999999999999999999987554
No 58
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.21 E-value=7e-11 Score=98.48 Aligned_cols=56 Identities=13% Similarity=0.293 Sum_probs=52.8
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLES 352 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~ 352 (593)
.|..|+||+++|+|||||||+.|.|..+++++++.+++|..+++++++.++..++.
T Consensus 32 ~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~ 87 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL 87 (97)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 36789999999999999999999999999999999999999999999999988754
No 59
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=99.21 E-value=1.1e-10 Score=114.14 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=89.5
Q ss_pred cCcHHHHHHHHh--hccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCe
Q 007679 432 KLNEAILDALCD--CVKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDF 509 (593)
Q Consensus 432 ~~s~~~l~~L~~--~l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~ 509 (593)
+++++.++.++. .++.+.|.+|++|+.+||.++.+|||.+|.|+++.. ..+|. ...+..+ +|++
T Consensus 3 ~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~--~~~G~-----------e~~~~~~-~G~~ 68 (238)
T 2bgc_A 3 NAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSI--SENGT-----------IMNLQYY-KGAF 68 (238)
T ss_dssp -CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEE--CTTSC-----------EEEEEEE-ESSE
T ss_pred CCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEE--CCCCC-----------EEEEEEc-CCCE
Confidence 578888888885 599999999999999999999999999999999972 13443 2466777 9999
Q ss_pred ecchhHHHhhcccccCCCCC-cceEEEEe-ceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 510 WGEELVAWALYNRSLSNIPV-STRTVQTL-TDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 510 FGe~~ll~~~~~~~~~~~~~-r~~tv~A~-~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
||+.+++.. .++ +..++.|. ++|+++.|++++|.++++++|++....
T Consensus 69 ~Ge~~~~~~--------~~~~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~ 117 (238)
T 2bgc_A 69 VIMSGFIDT--------ETSVGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYV 117 (238)
T ss_dssp EEESBCTTT--------CCBSCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHH
T ss_pred ecchhhhcC--------CCcCcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence 999976421 111 25677888 599999999999999999999986554
No 60
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E
Probab=99.18 E-value=8.7e-11 Score=138.58 Aligned_cols=115 Identities=13% Similarity=0.157 Sum_probs=99.7
Q ss_pred HHHHHhhcCHhhhcCcHHHHHHHHhhccEEE-ecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCc
Q 007679 419 LCLELLKSVEEFKKLNEAILDALCDCVKMTF-YFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNN 497 (593)
Q Consensus 419 ~~~~~l~~i~~F~~~s~~~l~~L~~~l~~~~-~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~ 497 (593)
...+.+.++|.|.+++...+..|+..+.... +..|++|+++||.++.+|||.+|.|+|+. +++
T Consensus 334 ~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~-----~~~----------- 397 (999)
T 4f7z_A 334 IIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI-----YGK----------- 397 (999)
T ss_dssp HHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE-----TTT-----------
T ss_pred HHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE-----cCC-----------
Confidence 3457789999999999999999999999765 57799999999999999999999999998 232
Q ss_pred cccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEece-EEEEEECHHHHHHHHHhchh
Q 007679 498 MTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTD-VEGFVLTAEDLKSVFTEHEI 559 (593)
Q Consensus 498 ~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~-~~l~~Ls~~df~~ll~~~P~ 559 (593)
..++.+++|++|||.+++. ..||.+|++|.++ |++++|+++||.+++.+-.+
T Consensus 398 -~~v~~L~~Gd~FGElALL~---------~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~ 450 (999)
T 4f7z_A 398 -GVVCTLHEGDDFGKLALVN---------DAPRAASIVLREDNCHFLRVDKEDGNRILRDVEA 450 (999)
T ss_dssp -EEEEEEETTCEECGGGGTC---------SCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHHH
T ss_pred -cceEEecCCCcccchhhcc---------CCCeeEEEEEecCceEEEEeeHHHHHHHHhHHHH
Confidence 3678999999999998853 2288999999985 99999999999999976543
No 61
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.17 E-value=1.3e-10 Score=117.09 Aligned_cols=61 Identities=5% Similarity=-0.052 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhHhhccccCC-Ccc-cCchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 007679 295 PQKFLHCFRWGLRNLSCIGQN-LQT-SSNSWE----NFFVILVTICGLLLLLFLFGNMQMYLESKAL 355 (593)
Q Consensus 295 ~~~Yl~slYwa~~TmtTvGyG-di~-p~~~~E----~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~ 355 (593)
+..+..|+||++.|+||+||| |+. |.+... ..+++++++.|.++.+..+|.+.+-+.+...
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999999 985 765543 7888999999999999999999887765443
No 62
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.16 E-value=5.4e-11 Score=95.93 Aligned_cols=54 Identities=9% Similarity=0.268 Sum_probs=51.5
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYL 350 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~ 350 (593)
.|..|+||+++|+|||||||+.|.|..+++++++.+++|..++++.++.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999875
No 63
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.14 E-value=2.7e-12 Score=118.37 Aligned_cols=64 Identities=8% Similarity=0.326 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHH
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKALKSKE 359 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~~~ 359 (593)
..|..|+||+++|+|||||||++|.|..+++++++.+++|.+++++++|.+++.+.+...++.+
T Consensus 66 ~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~~~~~ 129 (166)
T 3pjs_K 66 ITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQ 129 (166)
T ss_dssp CSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999988766554443
No 64
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.99 E-value=1.4e-09 Score=109.55 Aligned_cols=57 Identities=19% Similarity=0.315 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLES 352 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~ 352 (593)
..|..|+|||++|||||||||++|.+...++++++.+++|.+++|+++|.+.+.++.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999999999988887754
No 65
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=98.95 E-value=1.3e-09 Score=103.02 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=73.0
Q ss_pred EEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCC
Q 007679 448 TFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNI 527 (593)
Q Consensus 448 ~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~ 527 (593)
+.|.+|++|+++||.++.+|||.+|.|+++.. ..+|. ...+..+++|++||+ +++. .
T Consensus 2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~--~~~g~-----------~~~~~~~~~G~~~Ge-~~~~---~------ 58 (195)
T 3b02_A 2 KRFARKETIYLRGEEARTLYRLEEGLVRVVEL--LPDGR-----------LITLRHVLPGDYFGE-EALE---G------ 58 (195)
T ss_dssp EEECTTCEEECTTSBCCCEEEEEESCEEEEEE--CTTSC-----------EEEEEEECTTCEECG-GGGT---C------
T ss_pred eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEE--CCCCC-----------EEEEEEecCCCEech-hhhC---C------
Confidence 57899999999999999999999999999872 13443 257889999999999 8742 1
Q ss_pred CCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 528 PVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 528 ~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
.++.++++|.++|+++.|++++|. |++....
T Consensus 59 ~~~~~~~~A~~~~~v~~i~~~~~~------p~~~~~~ 89 (195)
T 3b02_A 59 KAYRYTAEAMTEAVVQGLEPRAMD------HEALHRV 89 (195)
T ss_dssp SBCSSEEEESSSEEEEEECGGGCC------HHHHHHH
T ss_pred CCceeEEEECCcEEEEEEcHHHcC------HHHHHHH
Confidence 167899999999999999999997 7775444
No 66
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.93 E-value=1e-09 Score=111.60 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKA 354 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~ 354 (593)
..|..|+|||++|+|||||||++|.+..+++++++.+++|.+++|+++|.+.+.+....
T Consensus 95 ~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 95 PGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999887654
No 67
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.91 E-value=3.1e-09 Score=106.55 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESK 353 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~ 353 (593)
.|..|+||+++|||||||||++|.|...++++++.+++|..+++++++.+++.+.+.
T Consensus 115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~ 171 (309)
T 3um7_A 115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSS 171 (309)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999988653
No 68
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.85 E-value=1.4e-08 Score=102.95 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=54.4
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKA 354 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~ 354 (593)
.|..|+|||++|||||||||+.|.+...++++++.+++|.+++|+++|.+.+.+....
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998887643
No 69
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=98.83 E-value=4.9e-09 Score=99.48 Aligned_cols=94 Identities=15% Similarity=0.119 Sum_probs=73.3
Q ss_pred HHhhccEEEecCCCEEEcCCCCc--cEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHh
Q 007679 441 LCDCVKMTFYFKHTHISLDGDPI--YEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWA 518 (593)
Q Consensus 441 L~~~l~~~~~~~ge~I~~~Gd~~--~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~ 518 (593)
|...++...|.+|+.|+.+||.+ +.+|||.+|.|+++.. ..+|. ...+..+++|++||+ +++..
T Consensus 1 l~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~--~~~G~-----------~~~~~~~~~g~~~G~-~~l~~ 66 (202)
T 2zcw_A 1 MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAV--DEEGN-----------ALTLRLVRPGGFFGE-EALFG 66 (202)
T ss_dssp -----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEE--CTTSC-----------EEEEEEECTTCEECT-HHHHT
T ss_pred CCccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEE--CCCCc-----------EEEEEEecCCCEeee-hhcCC
Confidence 34667889999999999999999 9999999999999872 13443 257788999999999 66421
Q ss_pred hcccccCCCCCcceEEEEeceEEEEEECHHHHHHHHHhchhhhhhh
Q 007679 519 LYNRSLSNIPVSTRTVQTLTDVEGFVLTAEDLKSVFTEHEISGSTK 564 (593)
Q Consensus 519 ~~~~~~~~~~~r~~tv~A~~~~~l~~Ls~~df~~ll~~~P~l~~~~ 564 (593)
.++..+++|.++|+++.| +++|. |++....
T Consensus 67 ---------~~~~~~~~A~~~~~v~~i-~~~~~------p~~~~~~ 96 (202)
T 2zcw_A 67 ---------QERIYFAEAATDVRLEPL-PENPD------PELLKDL 96 (202)
T ss_dssp ---------CCBCSEEEESSCEEEEEC-CSSCC------HHHHHHH
T ss_pred ---------CCcceEEEEcccEEEEEE-hHhcC------HHHHHHH
Confidence 156889999999999999 99886 7765433
No 70
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=98.64 E-value=1.5e-08 Score=101.54 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=55.0
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhchhH
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWEN------FFVILVTICGLLLLLFLFGNMQMYLESKALKS 357 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~------i~~i~~mi~G~~~~a~iig~i~~i~~~~~~~~ 357 (593)
.|+.|+||+++|+|||||||+.|.++.++ +++++++++|..+++++++.+++.+..+.+++
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999998887 59999999999999999999999887766443
No 71
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.62 E-value=5.1e-08 Score=96.26 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLES 352 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~ 352 (593)
.|..|+||+++|+|||||||++|.|+..++++++.+++|..+++++++.++..+..
T Consensus 93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999876543
No 72
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.60 E-value=1.4e-07 Score=104.09 Aligned_cols=54 Identities=17% Similarity=0.337 Sum_probs=49.3
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGN-MQMYL 350 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~-i~~i~ 350 (593)
.|..|+||+++|||||||||++|.|..+++++++++++|.+++++.++. +.+.+
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999988 54444
No 73
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.60 E-value=2.4e-07 Score=94.03 Aligned_cols=59 Identities=14% Similarity=0.316 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhHhhccccCCCcccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSS--NSWENFFVILVTICGLLLLLFLFGNMQMYLESKA 354 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~--~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~ 354 (593)
..+..++|||+.|+|||||||+.|+ +...++++++.+++|.++.|+.+|.+.+-++.-.
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 150 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPK 150 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 3456899999999999999999996 5789999999999999999999998888776544
No 74
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=98.50 E-value=6.6e-08 Score=95.42 Aligned_cols=55 Identities=20% Similarity=0.290 Sum_probs=50.5
Q ss_pred HHHHHHHHhHhhccccCCCcccCchh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007679 298 FLHCFRWGLRNLSCIGQNLQTSSNSW-------ENFFVILVTICGLLLLLFLFGNMQMYLES 352 (593)
Q Consensus 298 Yl~slYwa~~TmtTvGyGdi~p~~~~-------E~i~~i~~mi~G~~~~a~iig~i~~i~~~ 352 (593)
|+.|+||++.|+|||||||+.|.++. -++++++.+++|..+++++++.+++++..
T Consensus 202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999885 49999999999999999999999887653
No 75
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.46 E-value=5.2e-07 Score=91.64 Aligned_cols=59 Identities=17% Similarity=0.405 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhHhhccccCCCcccC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTSS--NSWENFFVILVTICGLLLLLFLFGNMQMYLESKA 354 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p~--~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~ 354 (593)
..+..++|||+.|+|||||||+.|+ +...++++++.+++|.++.|+.+|.+.+-++.-.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~ 153 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPK 153 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4577899999999999999999864 7889999999999999999999998887776543
No 76
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.37 E-value=2.3e-08 Score=102.95 Aligned_cols=57 Identities=11% Similarity=0.297 Sum_probs=50.4
Q ss_pred HHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 007679 298 FLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLESKA 354 (593)
Q Consensus 298 Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~~~ 354 (593)
|..|+||+++|+|||||||+.|.|..+++++++++++|.++++++++.+++.+.+..
T Consensus 46 ~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 46 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred HHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999999999999999999998876643
No 77
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.12 E-value=4.4e-05 Score=73.76 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhHhhccccCCCccc----CchhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 007679 296 QKFLHCFRWGLRNLSCIGQNLQTS----SNSWENFFVI-LVTICGLLLLLFLFGNMQMYLE 351 (593)
Q Consensus 296 ~~Yl~slYwa~~TmtTvGyGdi~p----~~~~E~i~~i-~~mi~G~~~~a~iig~i~~i~~ 351 (593)
+....|++|.+.++||.|++|+.. .+..-.++-+ ++.+.+.++....+|-+.+-++
T Consensus 164 ~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 164 GDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp SSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999998721 1122233333 3333334555555555554443
No 78
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=97.19 E-value=0.00071 Score=60.28 Aligned_cols=68 Identities=13% Similarity=0.270 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHhhheeeeeEEecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhccchhhhHHh
Q 007679 66 ITACLLRFLFDFLYSIPIALQMLTDLVSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSPSLLVDLLA 145 (593)
Q Consensus 66 ~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~~F~~Dlls 145 (593)
..+..+|.++-++|.+|.++++..+- | .++|+++ =++|++|
T Consensus 52 ~~~~~id~~~~~iF~~Ey~lRl~~a~----------------~----------------------k~~f~~~-~iiDlla 92 (147)
T 2kyh_A 52 VRLYLVDLILVIILWADYAYRAYKSG----------------D----------------------PAGYVKK-TLYEIPA 92 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----------------C----------------------HHHHHHH-STTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC----------------c----------------------HHHHHHH-HHHHHHH
Confidence 45778999999999999999987321 1 4567776 5899999
Q ss_pred hcchhhhhhhhcccCCcchhHHHHHHHHHHHHHHH
Q 007679 146 IFPLPQLVILFIIPQMRGSKILDAMDLLKYSVFIQ 180 (593)
Q Consensus 146 ~lP~~~~~~~~~~~~~~~~~~l~~~rlLrl~rl~~ 180 (593)
++|+...... ...++..|++|++|++|
T Consensus 93 ilP~~~~~~~--------~~~lr~lRvlRllRv~R 119 (147)
T 2kyh_A 93 LVPAGLLALI--------EGHLAGLGLFRLVRLLR 119 (147)
T ss_dssp HCCHHHHHHH--------HHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHH--------HhHHHHHHHHHHHHHHH
Confidence 9998643321 02345555555555444
No 79
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=97.16 E-value=0.0009 Score=58.56 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhheeeeeEEecccccccCCceeEeecchhhhhccCCCCCCcccchHHHhhhhccchhhhHH
Q 007679 65 AITACLLRFLFDFLYSIPIALQMLTDLVSTDYVSYGENDSYVTHTLRMIVDLVGGNNSRRNISHIRVCEYLSPSLLVDLL 144 (593)
Q Consensus 65 ~~~~~~~~~~~d~~f~~Di~l~f~t~y~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~I~~~~~~~Yl~~~F~~Dll 144 (593)
...+..+|.++-++|.+|.++++..+ +. .++|++ |=++|++
T Consensus 36 ~~~l~~~d~~~~~iFt~E~~lRl~~~-----------~~---------------------------~~~y~~-~niiDll 76 (132)
T 1ors_C 36 LVRLYLVDLILVIILWADYAYRAYKS-----------GD---------------------------PAGYVK-KTLYEIP 76 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----------TS---------------------------TTTTTT-TCGGGTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-----------CC---------------------------HHHHHH-HHHHHHH
Confidence 34678899999999999999998731 11 457888 9999999
Q ss_pred hhcchhh
Q 007679 145 AIFPLPQ 151 (593)
Q Consensus 145 s~lP~~~ 151 (593)
+++|+..
T Consensus 77 ailp~~~ 83 (132)
T 1ors_C 77 ALVPAGL 83 (132)
T ss_dssp GGSCHHH
T ss_pred HHHHHHH
Confidence 9999854
No 80
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=72.97 E-value=3 Score=25.17 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 007679 571 NIQAACVIQLAWRRHRTRRKS 591 (593)
Q Consensus 571 r~~~~~~~q~~~~r~~~~~~~ 591 (593)
...+|..||-||++|..|+..
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 457899999999999988754
No 81
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=72.22 E-value=3.3 Score=25.84 Aligned_cols=21 Identities=43% Similarity=0.466 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 007679 571 NIQAACVIQLAWRRHRTRRKS 591 (593)
Q Consensus 571 r~~~~~~~q~~~~r~~~~~~~ 591 (593)
..++|..||.||++|..|+..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~ 25 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999988653
No 82
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=63.66 E-value=26 Score=32.70 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=51.1
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhccccc
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSL 524 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~ 524 (593)
+....+.||+.+-..-.+.+.+.+|++|++++.. +|+ ...+++|+++=-- +
T Consensus 39 ~~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i-----~~~--------------~~~l~~Gd~~~~p-------~--- 89 (227)
T 3rns_A 39 ISLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI-----ENN--------------KKTISNGDFLEIT-------A--- 89 (227)
T ss_dssp EEEEEECTTCEEEECSCSSCEEEEEEESEEEEEE-----SSC--------------EEEEETTEEEEEC-------S---
T ss_pred EEEEEECCCCccCccccCCCEEEEEEeCEEEEEE-----CCE--------------EEEECCCCEEEEC-------C---
Confidence 3455688999998877788999999999999998 333 1578888776421 1
Q ss_pred CCCCCcceEEEEeceEEEEEE
Q 007679 525 SNIPVSTRTVQTLTDVEGFVL 545 (593)
Q Consensus 525 ~~~~~r~~tv~A~~~~~l~~L 545 (593)
.....++|.+++.++.+
T Consensus 90 ----~~~H~~~a~~~~~~l~i 106 (227)
T 3rns_A 90 ----NHNYSIEARDNLKLIEI 106 (227)
T ss_dssp ----SCCEEEEESSSEEEEEE
T ss_pred ----CCCEEEEECCCcEEEEE
Confidence 22567889999998877
No 83
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}
Probab=63.05 E-value=26 Score=28.62 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=45.0
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhccccc
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSL 524 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~ 524 (593)
+....+.||..+-..-...+++++|.+|++++.. +++ ...+++|+.+=--.
T Consensus 38 v~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-----~~~--------------~~~l~~Gd~i~ip~---------- 88 (114)
T 3fjs_A 38 VMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIGV-----DGA--------------QRRLHQGDLLYLGA---------- 88 (114)
T ss_dssp EEEEEECTTCEEEEECCSSCEEEEEEESCEEEEE-----TTE--------------EEEECTTEEEEECT----------
T ss_pred EEEEEECCCCccCceeCCCcEEEEEEECEEEEEE-----CCE--------------EEEECCCCEEEECC----------
Confidence 3445678888876655566799999999999988 332 25788887765221
Q ss_pred CCCCCcceEEEEeceEEEEE
Q 007679 525 SNIPVSTRTVQTLTDVEGFV 544 (593)
Q Consensus 525 ~~~~~r~~tv~A~~~~~l~~ 544 (593)
.....+++.+++.++.
T Consensus 89 ----~~~H~~~~~~~~~~~~ 104 (114)
T 3fjs_A 89 ----GAAHDVNAITNTSLLV 104 (114)
T ss_dssp ----TCCEEEEESSSEEEEE
T ss_pred ----CCcEEEEeCCCcEEEE
Confidence 1244577777766443
No 84
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}
Probab=62.29 E-value=33 Score=27.66 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=31.5
Q ss_pred EecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 449 FYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 449 ~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
.+.||..+-......+++++|.+|.+.+.. ++. ...+++|+.+=
T Consensus 44 ~~~~g~~~~~H~h~~~e~~~vl~G~~~~~i-----~~~--------------~~~l~~Gd~i~ 87 (114)
T 2ozj_A 44 SFADGESVSEEEYFGDTLYLILQGEAVITF-----DDQ--------------KIDLVPEDVLM 87 (114)
T ss_dssp EEETTSSCCCBCCSSCEEEEEEEEEEEEEE-----TTE--------------EEEECTTCEEE
T ss_pred EECCCCccccEECCCCeEEEEEeCEEEEEE-----CCE--------------EEEecCCCEEE
Confidence 356776655445566799999999999888 332 25788988764
No 85
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=61.79 E-value=8.7 Score=43.37 Aligned_cols=55 Identities=9% Similarity=0.071 Sum_probs=44.8
Q ss_pred HHHHHHHHHhHhhccccCCCcccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007679 297 KFLHCFRWGLRNLSCIGQNLQTSSNSWENFFVILVTICGLLLLLFLFGNMQMYLES 352 (593)
Q Consensus 297 ~Yl~slYwa~~TmtTvGyGdi~p~~~~E~i~~i~~mi~G~~~~a~iig~i~~i~~~ 352 (593)
....++++++.++++.| ++..|.+...|++.+++++++.++.+.--+++++.+..
T Consensus 563 ~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 563 GIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35578999999999888 58899999999999999999999999999999998864
No 86
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9
Probab=55.63 E-value=50 Score=26.44 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=43.4
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhccccc
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSL 524 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~ 524 (593)
+....+.||..+-..-....++++|.+|.+.+.. +++ ...+++|+.+=--.
T Consensus 42 ~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~~-----~~~--------------~~~l~~Gd~~~ip~---------- 92 (115)
T 1yhf_A 42 ITVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI-----DQE--------------TYRVAEGQTIVMPA---------- 92 (115)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEESEEEEEE-----TTE--------------EEEEETTCEEEECT----------
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeCEEEEEE-----CCE--------------EEEECCCCEEEECC----------
Confidence 3445577887765444446799999999999987 332 15688888775221
Q ss_pred CCCCCcceEEEEeceEEEEEE
Q 007679 525 SNIPVSTRTVQTLTDVEGFVL 545 (593)
Q Consensus 525 ~~~~~r~~tv~A~~~~~l~~L 545 (593)
.....+++.++++++.+
T Consensus 93 ----~~~H~~~~~~~~~~~~v 109 (115)
T 1yhf_A 93 ----GIPHALYAVEAFQMLLV 109 (115)
T ss_dssp ----TSCEEEEESSCEEEEEE
T ss_pred ----CCCEEEEECCCceEEEE
Confidence 11344666667766554
No 87
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}
Probab=49.96 E-value=62 Score=25.88 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=43.5
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhccccc
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSL 524 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~ 524 (593)
+....+.||..+-..-....++++|.+|.+.+.. +++ ...+++|+.+=--.
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-----~~~--------------~~~l~~Gd~~~ip~---------- 86 (116)
T 2pfw_A 36 AVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVNV-----DGV--------------IKVLTAGDSFFVPP---------- 86 (116)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEEECEEEEE-----TTE--------------EEEECTTCEEEECT----------
T ss_pred EEEEEECCCCcCCcEECCcceEEEEEeeEEEEEE-----CCE--------------EEEeCCCCEEEECc----------
Confidence 3445578887654333446789999999999888 332 25688888754221
Q ss_pred CCCCCcceEEEEeceEEEEEE
Q 007679 525 SNIPVSTRTVQTLTDVEGFVL 545 (593)
Q Consensus 525 ~~~~~r~~tv~A~~~~~l~~L 545 (593)
.....+++.+++.++.+
T Consensus 87 ----~~~H~~~~~~~~~~l~v 103 (116)
T 2pfw_A 87 ----HVDHGAVCPTGGILIDT 103 (116)
T ss_dssp ----TCCEEEEESSCEEEEEE
T ss_pred ----CCceeeEeCCCcEEEEE
Confidence 11344666677776665
No 88
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=47.36 E-value=34 Score=28.33 Aligned_cols=45 Identities=9% Similarity=0.217 Sum_probs=32.8
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+.||..+-.. ...+++++|++|++.+.. +|+ ...+++||.+-
T Consensus 44 ~~~~~pG~~~~~H-~~~~E~~~Vl~G~~~~~~-----~g~--------------~~~l~~GD~v~ 88 (119)
T 3lwc_A 44 YGRYAPGQSLTET-MAVDDVMIVLEGRLSVST-----DGE--------------TVTAGPGEIVY 88 (119)
T ss_dssp EEEECTTCEEEEE-CSSEEEEEEEEEEEEEEE-----TTE--------------EEEECTTCEEE
T ss_pred EEEECCCCCcCcc-CCCCEEEEEEeCEEEEEE-----CCE--------------EEEECCCCEEE
Confidence 3456778765443 367899999999999988 333 25789998875
No 89
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A
Probab=45.45 E-value=29 Score=27.58 Aligned_cols=33 Identities=12% Similarity=-0.081 Sum_probs=24.9
Q ss_pred cEEEecCCCEEEcC--CCC-ccEEEEEEEeEEEEEe
Q 007679 446 KMTFYFKHTHISLD--GDP-IYEMLFLVRGKIWIYS 478 (593)
Q Consensus 446 ~~~~~~~ge~I~~~--Gd~-~~~lyfI~~G~V~v~~ 478 (593)
....+.||..+-.. -.. ..++++|.+|.+.+..
T Consensus 24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~~ 59 (113)
T 2gu9_A 24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAIV 59 (113)
T ss_dssp EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEEE
T ss_pred EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEEE
Confidence 34567888876544 334 6799999999999988
No 90
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}
Probab=44.47 E-value=29 Score=28.50 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=34.2
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
+....+.||..+-..-....++++|++|.+.+.. +++ ...+++|+.+=
T Consensus 43 ~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~-----~~~--------------~~~l~~Gd~~~ 90 (126)
T 4e2g_A 43 LNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELTI-----GEE--------------TRVLRPGMAYT 90 (126)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEECEEEEE-----TTE--------------EEEECTTEEEE
T ss_pred EEEEEECCCCcCCCccCCCceEEEEEEeEEEEEE-----CCE--------------EEEeCCCCEEE
Confidence 3455678888775544556899999999999988 332 15778888764
No 91
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A
Probab=43.91 E-value=33 Score=26.63 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=32.0
Q ss_pred cEEEecCCCEEEcCCCC-ccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 446 KMTFYFKHTHISLDGDP-IYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 446 ~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
....+.||..+-..-.. .+++++|.+|.+.+.. +++ ...+++|+.+=
T Consensus 31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~~-----~~~--------------~~~l~~Gd~~~ 78 (105)
T 1v70_A 31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVRV-----GEE--------------EALLAPGMAAF 78 (105)
T ss_dssp EEEEECTTCEEEEECCSSCEEEEEEEESCEEEEE-----TTE--------------EEEECTTCEEE
T ss_pred EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEEE-----CCE--------------EEEeCCCCEEE
Confidence 34557788776443333 3679999999999887 332 25678888764
No 92
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=39.10 E-value=81 Score=25.15 Aligned_cols=47 Identities=13% Similarity=0.052 Sum_probs=33.8
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
.-.....||+.-.. ...+++++|++|++.+.. .+|. ...+++||.+=
T Consensus 33 ~~~~~~~pg~~~~h--H~~~E~~~Vl~G~~~~~i----~~g~--------------~~~l~~GD~i~ 79 (101)
T 1o5u_A 33 WPIWEKEVSEFDWY--YDTNETCYILEGKVEVTT----EDGK--------------KYVIEKGDLVT 79 (101)
T ss_dssp SCEEEECSEEEEEE--CSSCEEEEEEEEEEEEEE----TTCC--------------EEEEETTCEEE
T ss_pred EEEEEeCCCccccc--CCceEEEEEEeCEEEEEE----CCCC--------------EEEECCCCEEE
Confidence 34556778876544 346899999999999988 3243 25788998875
No 93
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}
Probab=37.26 E-value=51 Score=26.91 Aligned_cols=49 Identities=20% Similarity=0.144 Sum_probs=33.2
Q ss_pred ccEEEecCCCEEEcCCCC-ccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 445 VKMTFYFKHTHISLDGDP-IYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
+....+.||..+-..-.. ..++++|++|++.+.. .+|. ...+++|+.+=
T Consensus 41 ~~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~----~~~~--------------~~~l~~Gd~~~ 90 (125)
T 3h8u_A 41 VVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ----GNGI--------------VTHLKAGDIAI 90 (125)
T ss_dssp EEEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC----STTC--------------EEEEETTEEEE
T ss_pred EEEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE----CCCe--------------EEEeCCCCEEE
Confidence 344567888877554444 3789999999999876 3433 25678888764
No 94
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}
Probab=34.39 E-value=49 Score=29.17 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=33.0
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
+....+.||..+-..-....++++|++|.+.+.. +++ ...+++|+.+=
T Consensus 58 ~~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~i-----~~~--------------~~~l~~Gd~i~ 105 (167)
T 3ibm_A 58 TRYFEVEPGGYTTLERHEHTHVVMVVRGHAEVVL-----DDR--------------VEPLTPLDCVY 105 (167)
T ss_dssp EEEEEECTTCBCCCBBCSSCEEEEEEESEEEEEE-----TTE--------------EEEECTTCEEE
T ss_pred EEEEEECCCCCCCCccCCCcEEEEEEeCEEEEEE-----CCE--------------EEEECCCCEEE
Confidence 3345567777654333456899999999999988 332 25678888764
No 95
>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18
Probab=34.34 E-value=45 Score=26.91 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=21.3
Q ss_pred EEecCCCEEEcCCCCccEEEEEEEeEEEEEe
Q 007679 448 TFYFKHTHISLDGDPIYEMLFLVRGKIWIYS 478 (593)
Q Consensus 448 ~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~ 478 (593)
..+.||...-..-....++++|.+|.+.+..
T Consensus 32 ~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i 62 (117)
T 2b8m_A 32 IVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL 62 (117)
T ss_dssp EEEETTCBCCCEECSSCEEEEEEESEEEEEE
T ss_pred EEECCCCcCCCEeCCCcEEEEEEeCEEEEEE
Confidence 4456666543222345689999999999988
No 96
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}
Probab=32.53 E-value=1.1e+02 Score=28.19 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=45.9
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhccccc
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSL 524 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~ 524 (593)
+....+.||..+-..-...+.+++|.+|++++.. +|+ ...+++|+.+=--+
T Consensus 155 ~~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~i-----~g~--------------~~~l~~Gd~i~ip~---------- 205 (227)
T 3rns_A 155 MTIMSFWKGESLDPHKAPGDALVTVLDGEGKYYV-----DGK--------------PFIVKKGESAVLPA---------- 205 (227)
T ss_dssp EEEEEECTTCEEEEECCSSEEEEEEEEEEEEEEE-----TTE--------------EEEEETTEEEEECT----------
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEeEEEEEEE-----CCE--------------EEEECCCCEEEECC----------
Confidence 4456789999887655567789999999999988 332 25678888764221
Q ss_pred CCCCCcceEEEE-eceEEEEE
Q 007679 525 SNIPVSTRTVQT-LTDVEGFV 544 (593)
Q Consensus 525 ~~~~~r~~tv~A-~~~~~l~~ 544 (593)
.....+++ .++++++.
T Consensus 206 ----~~~H~~~~~~~~~~~ll 222 (227)
T 3rns_A 206 ----NIPHAVEAETENFKMLL 222 (227)
T ss_dssp ----TSCEEEECCSSCEEEEE
T ss_pred ----CCcEEEEeCCCCEEEEE
Confidence 12345777 77776554
No 97
>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}
Probab=29.54 E-value=63 Score=26.42 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=31.1
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+.||...-..-....++++|.+|++.+.. +++ ...+++|+.+=
T Consensus 38 ~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~i-----~~~--------------~~~l~~Gd~~~ 83 (128)
T 4i4a_A 38 WCIVRPETKSFRHSHNEYELFIVIQGNAIIRI-----NDE--------------DFPVTKGDLII 83 (128)
T ss_dssp EEEECTTEECCCBCCSSEEEEEEEESEEEEEE-----TTE--------------EEEEETTCEEE
T ss_pred EEEECCCCccCCEecCCeEEEEEEeCEEEEEE-----CCE--------------EEEECCCcEEE
Confidence 34566776443333456789999999999988 332 25678887764
No 98
>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}
Probab=29.15 E-value=52 Score=26.04 Aligned_cols=69 Identities=10% Similarity=0.037 Sum_probs=39.7
Q ss_pred ecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCC
Q 007679 450 YFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPV 529 (593)
Q Consensus 450 ~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~ 529 (593)
..||+......+..+++++|.+|.+.+.. .+++ ...+++|+.+=-- + .
T Consensus 35 ~~~g~~~~H~H~~~~E~~~Vl~G~~~~~~----~~~~--------------~~~l~~Gd~~~ip-------~-------~ 82 (107)
T 2i45_A 35 KLLGDYGWHTHGYSDKVLFAVEGDMAVDF----ADGG--------------SMTIREGEMAVVP-------K-------S 82 (107)
T ss_dssp EEEEECCCBCC--CCEEEEESSSCEEEEE----TTSC--------------EEEECTTEEEEEC-------T-------T
T ss_pred ECCCCCcceeCCCCCEEEEEEeCEEEEEE----CCCc--------------EEEECCCCEEEEC-------C-------C
Confidence 34555432333333899999999999988 3412 1578888876422 1 1
Q ss_pred cceEEEEeceEEEEEECHHHH
Q 007679 530 STRTVQTLTDVEGFVLTAEDL 550 (593)
Q Consensus 530 r~~tv~A~~~~~l~~Ls~~df 550 (593)
.....++.+.+.++.+.....
T Consensus 83 ~~H~~~~~~~~~~l~i~~~~~ 103 (107)
T 2i45_A 83 VSHRPRSENGCSLVLIELSDP 103 (107)
T ss_dssp CCEEEEEEEEEEEEEEECC--
T ss_pred CcEeeEeCCCeEEEEEECCCc
Confidence 123355556788777765443
No 99
>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10
Probab=28.55 E-value=53 Score=27.07 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=22.2
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEe
Q 007679 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYS 478 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~ 478 (593)
...+.||...-..-....++++|.+|.+.+..
T Consensus 52 ~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~i 83 (126)
T 1vj2_A 52 LFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK 83 (126)
T ss_dssp EEEEEEEEEEEEECCSSCEEEEEEESEEEEEC
T ss_pred EEEECCCCcCCceeCCCcEEEEEEEeEEEEEE
Confidence 34456666553333346789999999999887
No 100
>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}
Probab=28.46 E-value=1.3e+02 Score=23.06 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=33.5
Q ss_pred ccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccCCCCCcceEEEEeceEEE
Q 007679 463 IYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLSNIPVSTRTVQTLTDVEG 542 (593)
Q Consensus 463 ~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~~~~~r~~tv~A~~~~~l 542 (593)
..++++|.+|.+.+.. .+.. ..+++|+.+=-- + .....+.+.+++.+
T Consensus 50 ~~e~~~v~~G~~~~~~----~~~~---------------~~l~~Gd~~~ip-------~-------~~~H~~~~~~~~~~ 96 (102)
T 3d82_A 50 TDEVFIVMEGTLQIAF----RDQN---------------ITLQAGEMYVIP-------K-------GVEHKPMAKEECKI 96 (102)
T ss_dssp CCEEEEEEESEEEEEC----SSCE---------------EEEETTEEEEEC-------T-------TCCBEEEEEEEEEE
T ss_pred CcEEEEEEeCEEEEEE----CCEE---------------EEEcCCCEEEEC-------C-------CCeEeeEcCCCCEE
Confidence 3789999999999887 2322 567888766321 1 11334566678888
Q ss_pred EEEC
Q 007679 543 FVLT 546 (593)
Q Consensus 543 ~~Ls 546 (593)
+.++
T Consensus 97 l~i~ 100 (102)
T 3d82_A 97 MIIE 100 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
No 101
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=28.26 E-value=52 Score=27.46 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=30.1
Q ss_pred ecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 450 YFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 450 ~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
..||..-....+ .+++++|++|++.+.. .+|. ...+++||.+-
T Consensus 56 ~~pG~~~~~~~~-~~E~~~Vl~G~~~l~~----~~g~--------------~~~l~~GD~~~ 98 (123)
T 3bcw_A 56 STSGSFQSNTTG-YIEYCHIIEGEARLVD----PDGT--------------VHAVKAGDAFI 98 (123)
T ss_dssp EEEEEEECCCTT-EEEEEEEEEEEEEEEC----TTCC--------------EEEEETTCEEE
T ss_pred ECCCceeeEcCC-CcEEEEEEEEEEEEEE----CCCe--------------EEEECCCCEEE
Confidence 455655543322 3899999999999988 4443 25789999886
No 102
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}
Probab=28.07 E-value=48 Score=28.93 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=22.4
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEe
Q 007679 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYS 478 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~ 478 (593)
...+.||..+-..-....++++|.+|++++..
T Consensus 48 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~v 79 (156)
T 3kgz_A 48 YFEVDEGGYSTLERHAHVHAVMIHRGHGQCLV 79 (156)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEEEEEEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE
Confidence 33456666554333445689999999999988
No 103
>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A
Probab=27.98 E-value=48 Score=29.57 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=35.1
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
+....+.||...-.....++++++|++|++.+.... .++. ....+++||.+=
T Consensus 43 ~~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~--~~~~-------------~~~~l~~GDv~~ 94 (178)
T 1dgw_A 43 VLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVN--PDGR-------------DTYKLDQGDAIK 94 (178)
T ss_dssp EEEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEE--TTEE-------------EEEEEETTEEEE
T ss_pred EEEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEe--CCCc-------------EEEEECCCCEEE
Confidence 445668899877655334689999999998887620 1222 335788888775
No 104
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=27.53 E-value=60 Score=26.92 Aligned_cols=43 Identities=9% Similarity=0.027 Sum_probs=30.3
Q ss_pred ecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 450 YFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 450 ~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
..||..-+.. +..+++++|++|++.+.. .+|. ...+++||.|-
T Consensus 49 ~tPG~~~~~~-~~~~E~~~iLeG~~~lt~----ddG~--------------~~~l~aGD~~~ 91 (116)
T 3es4_A 49 AEPGIYNYAG-RDLEETFVVVEGEALYSQ----ADAD--------------PVKIGPGSIVS 91 (116)
T ss_dssp ECSEEEEECC-CSEEEEEEEEECCEEEEE----TTCC--------------CEEECTTEEEE
T ss_pred cCCceeECee-CCCcEEEEEEEeEEEEEe----CCCe--------------EEEECCCCEEE
Confidence 3455544443 334599999999999988 5554 25789999886
No 105
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}
Probab=27.24 E-value=45 Score=29.46 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=31.0
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+.||..+-..-....++++|++|++++.. +|+ ...+++|+.+=
T Consensus 57 ~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~v-----~g~--------------~~~l~~GD~i~ 102 (166)
T 3jzv_A 57 YFEVGPGGHSTLERHQHAHGVMILKGRGHAMV-----GRA--------------VSAVAPYDLVT 102 (166)
T ss_dssp EEEEEEEEECCCBBCSSCEEEEEEEECEEEEE-----TTE--------------EEEECTTCEEE
T ss_pred EEEECCCCccCceeCCCcEEEEEEeCEEEEEE-----CCE--------------EEEeCCCCEEE
Confidence 34456776654433445689999999999987 332 25678888764
No 106
>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9
Probab=27.22 E-value=63 Score=26.99 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=31.3
Q ss_pred EEEecCCCEEEcCCCC-ccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 447 MTFYFKHTHISLDGDP-IYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+.||..+-..-.. ..++++|.+|.+.+.. ++. ...+++|+.+=
T Consensus 61 ~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i-----~~~--------------~~~l~~Gd~i~ 107 (133)
T 1o4t_A 61 RMKLPPGSSVGLHKHEGEFEIYYILLGEGVFHD-----NGK--------------DVPIKAGDVCF 107 (133)
T ss_dssp EEEECTTCEEEEEECCSEEEEEEEEESEEEEEE-----TTE--------------EEEEETTEEEE
T ss_pred EEEECCCCccCceECCCccEEEEEEeCEEEEEE-----CCE--------------EEEeCCCcEEE
Confidence 4557888766432233 4689999999999988 332 25678888764
No 107
>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}
Probab=27.00 E-value=94 Score=28.79 Aligned_cols=45 Identities=13% Similarity=0.013 Sum_probs=29.8
Q ss_pred EecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 449 FYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 449 ~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
.+.||..+=.--...+++|+|++|.++... .+++ ...+++|+.+=
T Consensus 138 ~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v----~~g~--------------~~~l~pGd~v~ 182 (217)
T 4b29_A 138 YWGPGLDYGWHEHLPEELYSVVSGRALFHL----RNAP--------------DLMLEPGQTRF 182 (217)
T ss_dssp EECSSCEEEEEECSSEEEEEEEEECEEEEE----TTSC--------------CEEECTTCEEE
T ss_pred EECCCCcCCCCCCCCceEEEEEeCCEEEEE----CCCC--------------EEecCCCCEEE
Confidence 344554433333457899999999999988 3332 25678887764
No 108
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=26.45 E-value=38 Score=26.52 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=31.5
Q ss_pred cEEEecCCCEEEcCCCCc-cEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 446 KMTFYFKHTHISLDGDPI-YEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 446 ~~~~~~~ge~I~~~Gd~~-~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
....+.||...-..-... +++++|.+|.+++.. .+|. ....+++|+.+=
T Consensus 21 ~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~----~~g~-------------~~~~l~~Gd~~~ 70 (97)
T 2fqp_A 21 TEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET----PEGS-------------VTSQLTRGVSYT 70 (97)
T ss_dssp EEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE----TTEE-------------EEEEECTTCCEE
T ss_pred EEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe----CCCC-------------EEEEEcCCCEEE
Confidence 345577887652222233 459999999999988 4431 125788888774
No 109
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=26.18 E-value=25 Score=28.04 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=24.3
Q ss_pred ccEEEecCCCEEEcCCCC-ccEEEEEEEeEEEEEe
Q 007679 445 VKMTFYFKHTHISLDGDP-IYEMLFLVRGKIWIYS 478 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~-~~~lyfI~~G~V~v~~ 478 (593)
.+...+.||+-+-.+-.. ....|+|.+|.+.+..
T Consensus 19 V~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~ 53 (98)
T 3lag_A 19 VTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVA 53 (98)
T ss_dssp EEEEEECTTEECCSEECCSCEEEEESSCBC-CEEC
T ss_pred EEEEEECCCCccCcEECCCcEEEEEEeccEEEEEe
Confidence 445678899888655443 4568888899999987
No 110
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=26.10 E-value=2.6e+02 Score=26.03 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=32.2
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+.||...-..- .+++.+|++|++++.. +|+ ...|++|+++=
T Consensus 54 ~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~~-----~~~--------------~~~l~~Gd~~~ 97 (246)
T 1sfn_A 54 TAEMPAGAQATESV--YQRFAFVLSGEVDVAV-----GGE--------------TRTLREYDYVY 97 (246)
T ss_dssp EEEECTTCEEECCS--SEEEEEEEEEEEEEEC-----SSC--------------EEEECTTEEEE
T ss_pred EEEECCCCcCCCCc--eeEEEEEEECEEEEEE-----CCE--------------EEEECCCCEEE
Confidence 45578887655442 7889999999999988 332 25788988775
No 111
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Probab=25.96 E-value=51 Score=28.87 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=31.4
Q ss_pred cEEEecCCCEEE--cCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 446 KMTFYFKHTHIS--LDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 446 ~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
....+.||.... ...+..+++++|++|++++.. +++ ...+++|+.+-
T Consensus 46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~~-----~~~--------------~~~l~~GD~i~ 94 (163)
T 3i7d_A 46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVD-----DQG--------------EHPMVPGDCAA 94 (163)
T ss_dssp EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEEE-----TTE--------------EEEECTTCEEE
T ss_pred EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEEE-----CCE--------------EEEeCCCCEEE
Confidence 345677887542 222233699999999999988 332 25678888765
No 112
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=25.17 E-value=93 Score=27.64 Aligned_cols=45 Identities=11% Similarity=0.227 Sum_probs=31.0
Q ss_pred EEecCCCEEEc--CCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 448 TFYFKHTHISL--DGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 448 ~~~~~ge~I~~--~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
..+.||..... .....+++++|++|.+.+.. ++. ...+++|+.+=
T Consensus 109 ~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~~-----~~~--------------~~~l~~GD~i~ 155 (192)
T 1y9q_A 109 ITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFF-----DEQ--------------WHELQQGEHIR 155 (192)
T ss_dssp EEECTTCEEEECCCSTTCEEEEEEEESCEEEEE-----TTE--------------EEEECTTCEEE
T ss_pred EEECCCCCccCCCCCCCCEEEEEEEEeEEEEEE-----CCE--------------EEEeCCCCEEE
Confidence 45677776542 22334799999999999988 332 25788998774
No 113
>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}
Probab=25.09 E-value=71 Score=28.47 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=33.0
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCee
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFW 510 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~F 510 (593)
+....+.||...-..-....+..+|++|++++.. .+|+ ...+++|+.+
T Consensus 81 ~~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~l----d~ge--------------~~~L~~GDsi 128 (172)
T 3es1_A 81 IRVVDMLPGKESPMHRTNSIDYGIVLEGEIELEL----DDGA--------------KRTVRQGGII 128 (172)
T ss_dssp EEEEEECTTCBCCCBCCSEEEEEEEEESCEEEEC----GGGC--------------EEEECTTCEE
T ss_pred EEEEEECCCCCCCCeecCceEEEEEEeCEEEEEE----CCCe--------------EEEECCCCEE
Confidence 3445677777543333445678899999999988 3333 2578999998
No 114
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=24.85 E-value=64 Score=28.88 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=31.9
Q ss_pred EEecCCCEEE---cCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 448 TFYFKHTHIS---LDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 448 ~~~~~ge~I~---~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
..+.||...- ......+++++|++|++.+.. .+++ ......+++|+.+=
T Consensus 122 ~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~----~~~~-----------~~~~~~l~~GD~~~ 173 (198)
T 2bnm_A 122 VDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW----GDKE-----------NPKEALLPTGASMF 173 (198)
T ss_dssp EEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE----SCTT-----------SCEEEEECTTCEEE
T ss_pred EEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE----CCcC-----------CcccEEECCCCEEE
Confidence 3466776543 223345799999999999988 3321 01235789998875
No 115
>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}
Probab=24.57 E-value=48 Score=28.70 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=31.3
Q ss_pred cEEEecCCCE-EEc-CCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCee
Q 007679 446 KMTFYFKHTH-ISL-DGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFW 510 (593)
Q Consensus 446 ~~~~~~~ge~-I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~F 510 (593)
....+.||.. .-. .-...+++++|++|++.+.. +++ ...+++|+.+
T Consensus 49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~~-----~~~--------------~~~l~~Gd~i 96 (162)
T 3l2h_A 49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLTM-----END--------------QYPIAPGDFV 96 (162)
T ss_dssp EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEEE-----TTE--------------EEEECTTCEE
T ss_pred EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEEE-----CCE--------------EEEeCCCCEE
Confidence 3456788874 221 12246799999999999988 332 2568888887
No 116
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=24.33 E-value=52 Score=29.22 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=24.8
Q ss_pred CCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 461 DPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 461 d~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
..+++++||++|.+++.. ++. ...+++|+.|=
T Consensus 108 h~gEE~~yVLeG~v~vtl-----~g~--------------~~~L~~Gds~~ 139 (166)
T 2vpv_A 108 FRTYITFHVIQGIVEVTV-----CKN--------------KFLSVKGSTFQ 139 (166)
T ss_dssp CSEEEEEEEEESEEEEEE-----TTE--------------EEEEETTCEEE
T ss_pred CCceEEEEEEEeEEEEEE-----CCE--------------EEEEcCCCEEE
Confidence 346789999999999998 332 25788998875
No 117
>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9
Probab=23.85 E-value=1.3e+02 Score=25.55 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=31.4
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+.||..+-..-....++++|.+|.+.+.. +++ ....+++|+.+=
T Consensus 52 ~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~-----~~~-------------~~~~l~~Gd~i~ 98 (147)
T 2f4p_A 52 DVVFEPGARTHWHSHPGGQILIVTRGKGFYQE-----RGK-------------PARILKKGDVVE 98 (147)
T ss_dssp EEEECTTCEECSEECTTCEEEEEEEEEEEEEE-----TTS-------------CCEEEETTCEEE
T ss_pred EEEECCCCccCceECCCceEEEEEeCEEEEEE-----CCE-------------EEEEECCCCEEE
Confidence 45567777653333334789999999999988 332 114678888774
No 118
>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A
Probab=23.50 E-value=1.5e+02 Score=28.39 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=43.2
Q ss_pred cEEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeecchhHHHhhcccccC
Q 007679 446 KMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWGEELVAWALYNRSLS 525 (593)
Q Consensus 446 ~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FGe~~ll~~~~~~~~~ 525 (593)
-...+.||.---......+++.||++|++++.. .+|+ ...+++|+++=.-+
T Consensus 73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~l----~~g~--------------~~~L~~Gds~y~p~----------- 123 (266)
T 4e2q_A 73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTN----TSSS--------------SKKLTVDSYAYLPP----------- 123 (266)
T ss_dssp EEEEECSSEECCCCCTTEEEEEEEEEECEEEEC------CC--------------CEEECTTEEEEECT-----------
T ss_pred EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEEE----CCCc--------------EEEEcCCCEEEECC-----------
Confidence 345578887642233456799999999999988 3243 15788888775321
Q ss_pred CCCCcceEEEEeceEEEEEEC
Q 007679 526 NIPVSTRTVQTLTDVEGFVLT 546 (593)
Q Consensus 526 ~~~~r~~tv~A~~~~~l~~Ls 546 (593)
....+++..+.+.++.+.
T Consensus 124 ---~~~H~~~N~~~Ar~l~V~ 141 (266)
T 4e2q_A 124 ---NFHHSLDCVESATLVVFE 141 (266)
T ss_dssp ---TCCCEEEESSCEEEEEEE
T ss_pred ---CCCEEEEeCCCEEEEEEE
Confidence 113345555777777764
No 119
>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11
Probab=22.91 E-value=90 Score=29.33 Aligned_cols=50 Identities=10% Similarity=0.043 Sum_probs=36.9
Q ss_pred hhccEEEecCCCEEEc-CCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 443 DCVKMTFYFKHTHISL-DGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 443 ~~l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
..+....+.||..+-. .-...++.++|++|+..+.. +|+ ...+++||++-
T Consensus 165 ~~~~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~~-----~~~--------------~~~l~~GD~~~ 215 (246)
T 1sfn_A 165 FMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEGLYKL-----EEN--------------YYPVTAGDIIW 215 (246)
T ss_dssp EEEEEEEECTTCBCSSCBCCSSCEEEEEEECEEEEEE-----TTE--------------EEEEETTCEEE
T ss_pred eEEEEEEECCCCccCcccCCCceEEEEEEECEEEEEE-----CCE--------------EEEcCCCCEEE
Confidence 3455667899987753 34456789999999999988 443 25788999876
No 120
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=21.78 E-value=72 Score=26.91 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=30.7
Q ss_pred EEEecCCCEEEcCCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 447 MTFYFKHTHISLDGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+.||..-.. ...+++++|++|++.+.. +|+ ...+++||.+-
T Consensus 61 ~~~~~pG~~~~h--~~~~E~~~VLeG~~~l~~-----~g~--------------~~~l~~GD~i~ 104 (133)
T 2pyt_A 61 FMQWDNAFFPWT--LNYDEIDMVLEGELHVRH-----EGE--------------TMIAKAGDVMF 104 (133)
T ss_dssp EEEEEEEEEEEE--CSSEEEEEEEEEEEEEEE-----TTE--------------EEEEETTCEEE
T ss_pred EEEECCCCcccc--CCCCEEEEEEECEEEEEE-----CCE--------------EEEECCCcEEE
Confidence 344667743222 236899999999999988 343 24789999886
No 121
>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*
Probab=21.61 E-value=97 Score=28.94 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=26.5
Q ss_pred ccEEEecCCCEEEcCCCCccEEEEEEEeEEEEEe
Q 007679 445 VKMTFYFKHTHISLDGDPIYEMLFLVRGKIWIYS 478 (593)
Q Consensus 445 l~~~~~~~ge~I~~~Gd~~~~lyfI~~G~V~v~~ 478 (593)
+....+.||..+-..-....++++|++|.+++..
T Consensus 36 ~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~~ 69 (243)
T 3h7j_A 36 VLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMTV 69 (243)
T ss_dssp EEEEEECTTEEEEEECCSSEEEEEEEESEEEEEE
T ss_pred EEEEEECCCCccCCEECCCcEEEEEEEeEEEEEE
Confidence 4445588888876555557899999999999988
No 122
>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}
Probab=21.48 E-value=85 Score=25.57 Aligned_cols=33 Identities=12% Similarity=0.069 Sum_probs=21.3
Q ss_pred cEEEecCCCEEE--cCCCCccEEEEEEEeEEEEEe
Q 007679 446 KMTFYFKHTHIS--LDGDPIYEMLFLVRGKIWIYS 478 (593)
Q Consensus 446 ~~~~~~~ge~I~--~~Gd~~~~lyfI~~G~V~v~~ 478 (593)
....+.||..+- ..-+..+.+|+|.+|.+.+..
T Consensus 29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~i 63 (125)
T 3cew_A 29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITI 63 (125)
T ss_dssp EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEEE
T ss_pred EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEEE
Confidence 345567776552 222233457779999999888
No 123
>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*
Probab=21.16 E-value=72 Score=28.44 Aligned_cols=34 Identities=24% Similarity=0.535 Sum_probs=25.2
Q ss_pred CccEEEEEEEeEEEEEeeeeccC-CCccccccccCCccccceecCCCCeec
Q 007679 462 PIYEMLFLVRGKIWIYSSKERIN-GSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 462 ~~~~lyfI~~G~V~v~~~~~~~~-g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
..++++++++|.+.+.. .+ |+ ..-..+++|++|=
T Consensus 54 ~~dE~FyvlkG~m~i~v----~d~g~------------~~~v~l~eGE~f~ 88 (174)
T 1yfu_A 54 PLEEFFYQLRGNAYLNL----WVDGR------------RERADLKEGDIFL 88 (174)
T ss_dssp SSCEEEEEEESCEEEEE----EETTE------------EEEEEECTTCEEE
T ss_pred CCceEEEEEeeEEEEEE----EcCCc------------eeeEEECCCCEEE
Confidence 46799999999999988 34 32 1236788988875
No 124
>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11
Probab=20.87 E-value=1e+02 Score=29.44 Aligned_cols=48 Identities=8% Similarity=0.075 Sum_probs=34.3
Q ss_pred ccEEEecCCCEEEc-CCCCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 445 VKMTFYFKHTHISL-DGDPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 445 l~~~~~~~ge~I~~-~Gd~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
+....+.||..+-. .-...+++++|++|++.+.. +++ ...+++||.+=
T Consensus 184 ~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~i-----~~~--------------~~~l~~GD~i~ 232 (274)
T 1sef_A 184 MHILSFEPGASHAYIETHVQEHGAYLISGQGMYNL-----DNE--------------WYPVEKGDYIF 232 (274)
T ss_dssp EEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEEE-----TTE--------------EEEEETTCEEE
T ss_pred EEEEEECCCCccCcceeccCeEEEEEEeCEEEEEE-----CCE--------------EEEECCCCEEE
Confidence 34456788887643 33456799999999999988 332 25788988875
No 125
>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}
Probab=20.66 E-value=1.2e+02 Score=24.37 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=24.5
Q ss_pred CCccEEEEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 461 DPIYEMLFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 461 d~~~~lyfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+++++|++|.+.+.. +++ .....+++|+.+-
T Consensus 51 ~~~~E~~~Vl~G~~~l~~-----~~~------------~~~~~l~~Gd~i~ 84 (112)
T 2opk_A 51 SPQDEWVMVVSGSAGIEC-----EGD------------TAPRVMRPGDWLH 84 (112)
T ss_dssp CSSEEEEEEEESCEEEEE-----TTC------------SSCEEECTTEEEE
T ss_pred CCccEEEEEEeCeEEEEE-----CCE------------EEEEEECCCCEEE
Confidence 456799999999999988 332 1114688888775
No 126
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}
Probab=20.30 E-value=3e+02 Score=21.14 Aligned_cols=47 Identities=9% Similarity=0.061 Sum_probs=30.2
Q ss_pred EEEecCCCEEEcCCCCc-cEE-EEEEEeEEEEEeeeeccCCCccccccccCCccccceecCCCCeec
Q 007679 447 MTFYFKHTHISLDGDPI-YEM-LFLVRGKIWIYSSKERINGSANTDYFRDNNNMTKMDHLADGDFWG 511 (593)
Q Consensus 447 ~~~~~~ge~I~~~Gd~~-~~l-yfI~~G~V~v~~~~~~~~g~~~~~~~~~~~~~~~i~~l~~G~~FG 511 (593)
...+.||..+-..-... .++ ++|.+|.+.+.. .+|. ...+++|+.+=
T Consensus 37 ~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~~----~~~~--------------~~~l~~Gd~~~ 85 (110)
T 2q30_A 37 SFTFKAGQELPVHSHNIEGELNIVVLEGEGEFVG----DGDA--------------VIPAPRGAVLV 85 (110)
T ss_dssp EEEECTTCEEEEECCSSSCEEEEEEEESCEEEEC----GGGC--------------EEEECTTEEEE
T ss_pred EEEECCCCcCCcccCCCCccEEEEEEeCEEEEEe----CCCE--------------EEEECCCCEEE
Confidence 34567887764433332 466 899999999887 3232 15688887764
Done!