Query 007682
Match_columns 593
No_of_seqs 220 out of 1778
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 13:55:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 2.2E-69 4.8E-74 592.3 52.8 524 20-593 3-529 (557)
2 KOG1286 Amino acid transporter 100.0 2.1E-58 4.4E-63 495.0 27.9 385 45-433 26-427 (554)
3 PRK15049 L-asparagine permease 100.0 2.2E-48 4.8E-53 422.7 49.5 369 46-431 25-408 (499)
4 PRK10249 phenylalanine transpo 100.0 1.4E-48 3.1E-53 421.0 45.7 368 44-430 16-396 (458)
5 PRK11387 S-methylmethionine tr 100.0 7.3E-48 1.6E-52 417.5 47.0 367 46-432 11-395 (471)
6 PRK11357 frlA putative fructos 100.0 8.4E-48 1.8E-52 414.7 46.2 375 45-435 4-384 (445)
7 PRK10238 aromatic amino acid t 100.0 3.1E-47 6.7E-52 410.4 46.8 368 46-432 9-389 (456)
8 PRK10746 putative transport pr 100.0 8.5E-47 1.8E-51 406.9 46.6 369 45-432 6-391 (461)
9 PRK11049 D-alanine/D-serine/gl 100.0 1.2E-46 2.7E-51 407.4 47.3 371 44-433 15-403 (469)
10 PRK10655 potE putrescine trans 100.0 1E-46 2.2E-51 405.7 45.6 365 47-432 4-379 (438)
11 PRK10580 proY putative proline 100.0 1.7E-46 3.8E-51 405.4 47.6 370 44-432 4-388 (457)
12 PRK10836 lysine transporter; P 100.0 1.6E-46 3.4E-51 408.7 45.8 367 45-430 11-400 (489)
13 PRK10644 arginine:agmatin anti 100.0 3.6E-46 7.9E-51 401.8 47.1 368 46-431 5-380 (445)
14 TIGR01773 GABAperm gamma-amino 100.0 2.6E-46 5.7E-51 403.8 45.7 369 45-432 8-391 (452)
15 TIGR00911 2A0308 L-type amino 100.0 2.4E-46 5.2E-51 408.9 45.8 377 43-432 36-418 (501)
16 TIGR00908 2A0305 ethanolamine 100.0 7.1E-46 1.5E-50 399.5 46.6 369 44-432 2-376 (442)
17 TIGR00909 2A0306 amino acid tr 100.0 2.6E-46 5.7E-51 401.7 42.5 384 47-439 1-387 (429)
18 PRK10435 cadB lysine/cadaverin 100.0 2.2E-45 4.9E-50 394.1 46.2 362 47-427 3-377 (435)
19 TIGR00905 2A0302 transporter, 100.0 2.9E-45 6.4E-50 397.3 44.7 370 47-430 5-385 (473)
20 COG1113 AnsP Gamma-aminobutyra 100.0 1.4E-45 3E-50 374.4 37.6 371 43-432 7-392 (462)
21 PRK10197 gamma-aminobutyrate t 100.0 7E-45 1.5E-49 391.0 44.3 353 59-430 2-369 (446)
22 KOG1287 Amino acid transporter 100.0 5.1E-46 1.1E-50 384.1 33.2 372 46-432 9-387 (479)
23 TIGR00913 2A0310 amino acid pe 100.0 1.8E-44 3.9E-49 392.5 46.1 365 48-431 1-394 (478)
24 TIGR03428 ureacarb_perm permea 100.0 2.9E-44 6.4E-49 389.7 46.7 386 41-429 5-402 (475)
25 PRK11021 putative transporter; 100.0 1.7E-44 3.7E-49 384.9 41.9 356 51-429 1-362 (410)
26 COG0833 LysP Amino acid transp 100.0 8.2E-45 1.8E-49 376.1 36.6 368 46-431 41-430 (541)
27 TIGR03810 arg_ornith_anti argi 100.0 7.9E-44 1.7E-48 385.7 45.0 368 49-430 1-381 (468)
28 TIGR00907 2A0304 amino acid pe 100.0 2.1E-43 4.5E-48 384.4 42.6 379 41-427 4-407 (482)
29 TIGR03813 put_Glu_GABA_T putat 100.0 1.7E-42 3.6E-47 376.1 43.4 371 49-432 1-388 (474)
30 TIGR00910 2A0307_GadC glutamat 100.0 2.9E-42 6.3E-47 375.1 44.8 370 47-432 2-391 (507)
31 TIGR00930 2a30 K-Cl cotranspor 100.0 1.3E-41 2.8E-46 388.3 44.2 377 47-431 74-488 (953)
32 KOG1289 Amino acid transporter 100.0 1.8E-42 4E-47 357.6 29.6 382 38-428 37-443 (550)
33 PF13520 AA_permease_2: Amino 100.0 6.5E-42 1.4E-46 367.5 32.6 366 51-433 1-379 (426)
34 PRK15238 inner membrane transp 100.0 2.4E-40 5.1E-45 360.9 44.6 372 47-429 5-422 (496)
35 COG0531 PotE Amino acid transp 100.0 3.4E-40 7.5E-45 358.3 42.4 376 45-432 8-392 (466)
36 PF00324 AA_permease: Amino ac 100.0 5.9E-41 1.3E-45 364.8 13.3 363 57-431 3-394 (478)
37 TIGR00837 araaP aromatic amino 100.0 2.4E-27 5.1E-32 250.7 30.0 343 57-427 3-354 (381)
38 KOG1288 Amino acid transporter 99.9 2.9E-22 6.4E-27 208.9 25.9 380 47-435 62-478 (945)
39 KOG2082 K+/Cl- cotransporter K 99.9 4.2E-22 9E-27 209.1 26.1 382 49-434 112-600 (1075)
40 TIGR00912 2A0309 spore germina 99.9 5.3E-20 1.1E-24 193.1 36.5 287 50-361 2-295 (359)
41 PHA02764 hypothetical protein; 99.9 7.8E-20 1.7E-24 175.9 26.2 279 42-382 5-285 (399)
42 KOG2083 Na+/K+ symporter [Inor 99.8 2.1E-18 4.6E-23 179.3 19.5 371 49-434 28-420 (643)
43 TIGR00814 stp serine transport 99.8 1.2E-16 2.6E-21 167.7 32.6 288 57-364 9-313 (397)
44 TIGR00796 livcs branched-chain 99.8 6.2E-16 1.3E-20 160.2 34.8 338 61-438 5-364 (378)
45 PF03222 Trp_Tyr_perm: Tryptop 99.8 1.7E-15 3.7E-20 159.3 37.2 323 50-400 2-333 (394)
46 PRK10483 tryptophan permease; 99.7 1.8E-14 4E-19 150.2 33.1 356 47-431 7-372 (414)
47 PRK09664 tryptophan permease T 99.7 4E-14 8.6E-19 147.6 33.0 355 52-431 10-373 (415)
48 COG1115 AlsT Na+/alanine sympo 99.7 4.2E-14 9E-19 144.8 28.1 296 48-362 60-382 (452)
49 PF01235 Na_Ala_symp: Sodium:a 99.7 1.6E-14 3.4E-19 149.9 25.4 295 48-362 16-338 (416)
50 PRK15132 tyrosine transporter 99.7 2.7E-13 5.9E-18 142.1 34.2 346 52-428 4-358 (403)
51 PRK13629 threonine/serine tran 99.7 7.1E-13 1.5E-17 138.3 34.8 375 47-438 17-420 (443)
52 COG0814 SdaC Amino acid permea 99.6 5.3E-13 1.1E-17 141.5 34.4 290 47-352 5-305 (415)
53 PF03845 Spore_permease: Spore 99.6 1.6E-12 3.5E-17 134.0 32.3 286 50-361 1-291 (320)
54 TIGR00835 agcS amino acid carr 99.5 2.1E-11 4.6E-16 127.5 33.0 294 49-362 45-365 (425)
55 KOG1303 Amino acid transporter 99.2 2E-08 4.3E-13 106.1 28.5 283 47-351 34-324 (437)
56 PLN03074 auxin influx permease 99.1 2.6E-07 5.7E-12 99.7 34.4 238 48-310 43-293 (473)
57 KOG1304 Amino acid transporter 99.1 1.3E-07 2.7E-12 98.7 29.3 347 48-431 44-414 (449)
58 PTZ00206 amino acid transporte 99.1 4.6E-07 1E-11 98.1 34.7 251 53-311 62-319 (467)
59 PRK11375 allantoin permease; P 98.9 4.1E-05 8.9E-10 83.2 42.7 327 47-399 23-365 (484)
60 COG3949 Uncharacterized membra 98.9 6.2E-06 1.3E-10 81.8 30.0 267 57-353 9-280 (349)
61 PF13906 AA_permease_C: C-term 98.9 8E-10 1.7E-14 79.1 2.0 25 569-593 1-25 (51)
62 COG1457 CodB Purine-cytosine p 98.7 0.0003 6.4E-09 74.2 38.3 170 85-279 54-224 (442)
63 PF01490 Aa_trans: Transmembra 98.7 3.8E-09 8.1E-14 112.9 1.7 360 49-430 1-375 (409)
64 TIGR00800 ncs1 NCS1 nucleoside 98.7 0.0005 1.1E-08 74.3 39.8 246 47-304 10-262 (442)
65 TIGR02119 panF sodium/pantothe 98.5 0.0021 4.6E-08 70.0 37.9 288 48-358 39-346 (471)
66 TIGR00813 sss transporter, SSS 98.5 0.0011 2.4E-08 70.8 34.8 299 49-368 3-332 (407)
67 COG1953 FUI1 Cytosine/uracil/t 98.4 0.0038 8.3E-08 66.1 38.6 329 45-395 35-375 (497)
68 PRK09442 panF sodium/panthothe 98.4 0.0034 7.4E-08 68.6 38.0 327 48-397 40-386 (483)
69 COG0733 Na+-dependent transpor 98.4 0.00072 1.6E-08 70.6 28.8 293 52-351 10-324 (439)
70 PF05525 Branch_AA_trans: Bran 98.3 0.0013 2.8E-08 69.4 30.1 332 59-425 11-358 (427)
71 PF01566 Nramp: Natural resist 98.3 0.0015 3.2E-08 68.5 30.2 254 78-362 8-285 (358)
72 PRK11017 codB cytosine permeas 98.3 0.0096 2.1E-07 63.4 37.2 220 49-295 9-229 (404)
73 COG0591 PutP Na+/proline sympo 98.0 0.016 3.5E-07 63.3 33.1 300 48-369 37-364 (493)
74 PRK15433 branched-chain amino 98.0 0.0058 1.3E-07 64.6 28.2 220 183-425 124-361 (439)
75 TIGR02121 Na_Pro_sym sodium/pr 97.9 0.069 1.5E-06 58.4 36.9 289 48-358 35-346 (487)
76 PRK00701 manganese transport p 97.9 0.031 6.7E-07 60.0 30.3 76 64-144 47-124 (439)
77 PF00474 SSF: Sodium:solute sy 97.8 0.0017 3.8E-08 69.3 20.3 289 48-360 5-322 (406)
78 PRK15419 proline:sodium sympor 97.8 0.09 1.9E-06 57.8 37.5 156 48-221 39-201 (502)
79 PRK12488 acetate permease; Pro 97.8 0.11 2.3E-06 57.8 35.8 154 48-221 66-221 (549)
80 TIGR02358 thia_cytX probable h 97.8 0.078 1.7E-06 56.1 36.2 246 83-361 29-275 (386)
81 COG1114 BrnQ Branched-chain am 97.7 0.074 1.6E-06 55.2 28.9 284 53-358 7-304 (431)
82 TIGR02711 symport_actP cation/ 97.7 0.15 3.3E-06 56.6 36.9 154 48-221 66-221 (549)
83 KOG1305 Amino acid transporter 97.7 0.022 4.8E-07 60.3 25.2 247 48-311 3-257 (411)
84 TIGR03648 Na_symport_lg probab 97.5 0.26 5.6E-06 54.9 35.7 152 48-218 31-183 (552)
85 PF02705 K_trans: K+ potassium 97.5 0.024 5.3E-07 61.3 22.2 225 179-421 130-369 (534)
86 PF02133 Transp_cyt_pur: Perme 97.3 0.0034 7.3E-08 67.8 13.8 168 48-221 6-177 (440)
87 PRK09395 actP acetate permease 97.2 0.53 1.1E-05 52.4 37.9 152 48-221 68-223 (551)
88 COG1914 MntH Mn2+ and Fe2+ tra 97.2 0.39 8.4E-06 50.9 32.1 42 316-357 268-312 (416)
89 PF02028 BCCT: BCCT family tra 97.2 0.46 1E-05 51.5 33.7 87 332-427 391-482 (485)
90 PRK10484 putative transporter; 97.0 0.81 1.8E-05 50.6 43.8 297 48-358 37-355 (523)
91 PLN00150 potassium ion transpo 96.4 0.77 1.7E-05 51.8 23.0 220 183-417 216-448 (779)
92 PLN00151 potassium transporter 96.4 0.64 1.4E-05 52.6 22.2 221 183-418 276-509 (852)
93 COG1292 BetT Choline-glycine b 96.3 2.1 4.5E-05 46.3 29.7 91 331-428 403-496 (537)
94 PLN00149 potassium transporter 96.3 0.8 1.7E-05 51.8 22.1 224 183-418 200-436 (779)
95 PRK09950 putative transporter; 96.0 3.1 6.6E-05 45.4 34.1 102 318-426 390-495 (506)
96 PRK10745 trkD potassium transp 95.9 0.38 8.3E-06 52.9 17.2 224 179-418 141-377 (622)
97 PLN00148 potassium transporter 95.9 0.91 2E-05 51.3 20.4 218 183-415 199-429 (785)
98 TIGR00794 kup potassium uptake 95.8 0.27 5.8E-06 54.9 15.7 224 180-419 167-404 (688)
99 COG4147 DhlC Predicted symport 95.6 3.9 8.5E-05 43.4 25.2 288 82-398 76-410 (529)
100 PF00209 SNF: Sodium:neurotran 95.2 5 0.00011 44.4 23.5 67 52-119 6-73 (523)
101 PRK09928 choline transport pro 94.6 10 0.00022 42.7 32.9 102 318-426 397-501 (679)
102 KOG2466 Uridine permease/thiam 94.3 8.6 0.00019 41.0 21.6 173 47-227 52-232 (572)
103 PRK03356 L-carnitine/gamma-but 92.9 17 0.00036 39.7 35.8 103 318-427 393-498 (504)
104 TIGR01197 nramp NRAMP (natural 92.8 15 0.00032 38.9 34.2 43 319-361 282-324 (390)
105 COG3158 Kup K+ transporter [In 92.5 3.5 7.6E-05 44.6 14.6 49 178-229 145-193 (627)
106 KOG4303 Vesicular inhibitory a 88.5 7.6 0.00016 39.5 12.0 347 48-429 114-482 (524)
107 KOG3660 Sodium-neurotransmitte 87.1 58 0.0013 36.7 22.2 65 52-120 39-107 (629)
108 TIGR00842 bcct choline/carniti 84.0 67 0.0015 34.7 35.2 101 318-425 344-448 (453)
109 COG4145 PanF Na+/panthothenate 83.5 60 0.0013 33.8 26.6 274 48-352 38-339 (473)
110 PRK10836 lysine transporter; P 78.0 6.2 0.00014 43.2 7.5 25 567-591 410-434 (489)
111 PF02554 CstA: Carbon starvati 71.4 1.4E+02 0.0029 31.3 21.9 97 51-149 52-149 (376)
112 PRK11357 frlA putative fructos 70.5 20 0.00044 38.5 9.1 24 567-590 383-406 (445)
113 COG3949 Uncharacterized membra 67.5 1.5E+02 0.0033 30.4 15.0 120 288-426 40-160 (349)
114 PRK11387 S-methylmethionine tr 63.1 28 0.00061 37.8 8.4 25 566-590 402-426 (471)
115 PTZ00206 amino acid transporte 61.0 1E+02 0.0022 33.5 12.1 56 316-371 120-175 (467)
116 COG0833 LysP Amino acid transp 59.3 32 0.00069 37.6 7.5 25 566-590 438-462 (541)
117 TIGR00913 2A0310 amino acid pe 58.9 34 0.00073 37.3 8.1 25 566-590 402-426 (478)
118 KOG3659 Sodium-neurotransmitte 50.0 4.1E+02 0.0088 29.7 14.6 117 183-303 256-377 (629)
119 TIGR00909 2A0306 amino acid tr 48.7 68 0.0015 34.2 8.3 26 567-592 382-407 (429)
120 PRK10238 aromatic amino acid t 47.8 57 0.0012 35.3 7.5 25 566-590 393-417 (456)
121 PRK07419 1,4-dihydroxy-2-napht 46.6 3.3E+02 0.0072 27.7 12.3 29 93-130 125-153 (304)
122 TIGR00908 2A0305 ethanolamine 46.5 72 0.0016 34.3 8.1 24 567-590 379-402 (442)
123 PRK10197 gamma-aminobutyrate t 44.9 67 0.0014 34.7 7.5 25 566-590 375-399 (446)
124 TIGR02235 menA_cyano-plnt 1,4- 44.7 3.4E+02 0.0074 27.3 12.4 30 92-130 111-140 (285)
125 COG1966 CstA Carbon starvation 44.4 4.8E+02 0.01 28.9 32.1 101 51-152 52-152 (575)
126 PRK10249 phenylalanine transpo 41.4 76 0.0017 34.3 7.3 25 566-590 402-426 (458)
127 PRK10644 arginine:agmatin anti 41.3 85 0.0018 33.7 7.6 23 569-591 382-404 (445)
128 COG1113 AnsP Gamma-aminobutyra 40.7 91 0.002 33.4 7.3 22 565-586 395-416 (462)
129 PF12273 RCR: Chitin synthesis 37.5 14 0.0003 32.4 0.7 7 549-555 17-23 (130)
130 PRK15049 L-asparagine permease 35.8 1.2E+02 0.0026 33.3 7.8 25 566-590 414-438 (499)
131 KOG1289 Amino acid transporter 33.2 7E+02 0.015 27.6 15.5 141 85-227 293-437 (550)
132 PF11947 DUF3464: Protein of u 32.7 1.1E+02 0.0023 27.8 5.4 66 54-120 64-135 (153)
133 PRK10580 proY putative proline 32.5 1.7E+02 0.0037 31.5 8.3 25 566-590 393-417 (457)
134 PRK13105 ubiA prenyltransferas 31.9 5.4E+02 0.012 25.9 12.5 27 92-127 110-136 (282)
135 PRK10746 putative transport pr 31.4 2E+02 0.0043 31.2 8.5 24 566-589 395-418 (461)
136 PF05656 DUF805: Protein of un 28.4 2.5E+02 0.0054 23.7 7.1 17 575-591 89-105 (120)
137 PF11174 DUF2970: Protein of u 27.4 2E+02 0.0043 21.2 5.1 46 253-301 3-48 (56)
138 PF12273 RCR: Chitin synthesis 26.1 43 0.00092 29.3 1.8 28 531-558 2-29 (130)
139 KOG1303 Amino acid transporter 24.5 9.1E+02 0.02 26.0 11.9 95 317-418 105-199 (437)
140 TIGR01773 GABAperm gamma-amino 23.3 2.5E+02 0.0054 30.2 7.5 23 567-589 396-418 (452)
141 PF12666 PrgI: PrgI family pro 23.0 3.1E+02 0.0067 22.1 6.3 28 47-74 13-40 (93)
142 TIGR02840 spore_YtaF putative 21.2 2.2E+02 0.0047 27.2 5.7 57 48-111 123-182 (206)
143 KOG2349 Na+:iodide/myo-inosito 21.1 8.7E+02 0.019 27.2 10.9 32 331-362 333-364 (585)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=2.2e-69 Score=592.27 Aligned_cols=524 Identities=40% Similarity=0.662 Sum_probs=418.1
Q ss_pred hhhhhhhhhccccCCCCCCCCcccccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHH
Q 007682 20 FGCCVRTLVRRKQVDSVHTKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFS 99 (593)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~ 99 (593)
.+++.+++.|||+.++++. ++++++|+++.+|++++++|.++|+|+|+.++.++.+.+||+++++|+++++.+++.
T Consensus 3 ~~~~~~~~~r~k~~~~~~~----~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~ 78 (557)
T TIGR00906 3 VLTFARCLIRRKIVDLDSR----EESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLS 78 (557)
T ss_pred hHHHHHHHhccCCcccccc----cccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 4577899999999975321 233599999999999999999999999999998877789999999999999999999
Q ss_pred HHHHHHHhhhccCCCccccchHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-hhhhhhhccCCCCc
Q 007682 100 AFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS-LPFFMARQQIPGLG 178 (593)
Q Consensus 100 al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~ 178 (593)
++||+|+++++|++||.|.|+++.+||.+||++||.++++|....+.++.+++.+++.+++.... ..........+...
T Consensus 79 al~yaElas~~P~sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~ 158 (557)
T TIGR00906 79 GFCYAEFGARVPKAGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLA 158 (557)
T ss_pred HHHHHHHHHhCCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999888753210 00000000112222
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC--CCCCCCCchhHHHHHHHH
Q 007682 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYE--LPTGYFPFGVNGMLAGSA 256 (593)
Q Consensus 179 ~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~--~~~~~~p~g~~~~~~~~~ 256 (593)
..+++++++++++++.+|.+|+|.+++++++++.++++.++++++.++.+.+.++|.... ..+++.|+|+.+++.++.
T Consensus 159 ~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~ 238 (557)
T TIGR00906 159 EYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAA 238 (557)
T ss_pred ccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHH
Confidence 345667888888999999999999999999999999999888888888766555664211 224677888889999999
Q ss_pred HHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHHHH
Q 007682 257 TVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVIT 336 (593)
Q Consensus 257 ~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~ 336 (593)
.++|+|.|+|.+++++||+|||+|++||+++.++++++++|++.++++..++|+++++.++|+.++++..+.+|...++.
T Consensus 239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~ 318 (557)
T TIGR00906 239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVA 318 (557)
T ss_pred HHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888889999999999899999999
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 007682 337 IGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAF 416 (593)
Q Consensus 337 i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y 416 (593)
++.+++.+++.++.+.+.+|++|+|||||.+|++|+|+|+|+++|++++++.++++.++.++.+++.+.++.+++++++|
T Consensus 319 ~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y 398 (557)
T TIGR00906 319 VGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAY 398 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCcccccccccccccccccCCCccccCCCcccccchhhhhcCCcccccchhhhhhhc
Q 007682 417 TMVAISVLILRYVPPDEVPVPSTLQSSIDSVSLQFSQSSLSISGKSLVDDVGTLRETEPLLAKKGGAVSYPLIKQVQDIL 496 (593)
Q Consensus 417 ~l~~~~~l~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (593)
.++..+.+++||+++...+ .+. +.++++++ + +++..+.+.++ .
T Consensus 399 ~lv~~~~l~lR~~~~~~~~--~~~-------~~~~~~~~---~----~~~~~~~~~~~---------------------~ 441 (557)
T TIGR00906 399 SLVAACVLILRYQPGLVYG--QAK-------DTDEKDTL---D----SWVPFTSKSES---------------------Q 441 (557)
T ss_pred HHHHHHHHHhhcccccccc--ccc-------cccccccc---c----ccccccccccc---------------------c
Confidence 9999999999988653211 000 00010000 0 00000000000 0
Q ss_pred cccccccchhhhHHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHHHHhhcccccCcccccCCCCCCccccCCch
Q 007682 497 NEENRRTVAGWTIMFTCIGVFVLTYAASDLSLPRLLQLTLCGIGGALLLCGLIVLTSINQDEARHNFGHAGGFMCPFVPL 576 (593)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~f~~P~vP~ 576 (593)
+.+...+.. .+...+.++ +........... .|+.+.++.++.++.+..+.+++.|+|++++ ..||||+||+
T Consensus 442 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~f~~p~~p~ 512 (557)
T TIGR00906 442 SEGFSLRTL-FSGLILGLS-ILTTYGRAAIAE-EAWSIALLTLFLVLFLLVVLTIWRQPQNKQK------VAFKVPLVPF 512 (557)
T ss_pred ccchhHHHH-HHHHHHHHH-HHHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHHhcCCCCCCC------CCCCCCCchH
Confidence 000000011 111111111 111222222223 5676777777778888888888888887544 6799999999
Q ss_pred hhhHHHHHHHHHhhcCC
Q 007682 577 LPIACILINVYLLINLG 593 (593)
Q Consensus 577 ~P~~sI~~N~~Lm~~l~ 593 (593)
+|++||++|+|||.||+
T Consensus 513 ~p~~~i~~~~~l~~~l~ 529 (557)
T TIGR00906 513 LPALSILINIFLMVQLD 529 (557)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999986
No 2
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-58 Score=495.00 Aligned_cols=385 Identities=38% Similarity=0.640 Sum_probs=348.1
Q ss_pred cccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCccccchHHH
Q 007682 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYIC 123 (593)
Q Consensus 45 ~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~-~GG~y~~~~~~ 123 (593)
++++|+|+++|+.++++|+++|+|+|+.+|.+..+.+||+++++++++++.+++.++||+|++.++|+ +||.|.|+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 45999999999999999999999999999998888888899999999999999999999999999999 59999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHH-HhhHH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC-VGIKE 202 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~G~k~ 202 (593)
+||.+||.+||+|+++|++..++.+++++.+++.+. +.. .........+...++++++++++++.++.+-. .+.|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~-~~~--~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWT-GAS--LIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-ccc--cccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 999999999999999999999999999999999987 111 11111123344566777888877777777766 88899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC---CCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCC
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGY---ELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~---~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~ 279 (593)
+..++++++.++++++.+++..|....+..+|..+ .+++++.|+++.+++.++..++|+|.|+|.++..+||+|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 99999999999999999999999988777677643 234678899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCCChHHHHHH-HcchhHHHH---HHHHHHHHHHHHHHhhhhcc
Q 007682 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFA-SHGMHWASY---VITIGAVTALCSTLMGSILP 353 (593)
Q Consensus 280 r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~--l~~~~~~~~~~~-~~g~~~~~~---iv~i~~~~~~~~s~~~~~~~ 353 (593)
|++|+|+..++..+.++|++.++.+++++|+++ ++++++....|. ..+.++..+ ++++++++++.+++++.+++
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999999 888888888888 777777777 99999999999999999999
Q ss_pred hhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCH------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007682 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDV------SALAGMVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 354 ~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~------~~l~~l~si~~l~~y~l~~~~~l~lr 427 (593)
+||.+++||+||.+||+|+++|++ |+|++|+++.++++++..+..+. ++|+++.++++++.|.+++++.+++|
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFR 421 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeee
Confidence 999999999999999999999999 99999999999999998888776 99999999999999999999999999
Q ss_pred cCCCCC
Q 007682 428 YVPPDE 433 (593)
Q Consensus 428 ~~~~~~ 433 (593)
|..+++
T Consensus 422 ~a~~~q 427 (554)
T KOG1286|consen 422 YAMKVQ 427 (554)
T ss_pred eccccc
Confidence 876543
No 3
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=2.2e-48 Score=422.69 Aligned_cols=369 Identities=24% Similarity=0.380 Sum_probs=309.6
Q ss_pred ccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhC
Q 007682 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (593)
Q Consensus 46 ~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG 125 (593)
+++|+++.+++.++++|+++|+|+|..++... ..+||..+++|++++++.++.+++++|+++++|++||.|.|+++.+|
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~-~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G 103 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARL-QMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLG 103 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 49999999999999999999999999999854 77899989999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
|.+||++||.+|++|+...+......+.+...+ ... +. ...+..+++++++++.+|++|+|...+
T Consensus 104 ~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~------------~~--~~~~~~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 104 EKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAF------------GG--VPQWVFALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC------------CC--CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998866554444444443211 100 00 112235777788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc-----C---CCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhC
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGFKT-----G---WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~~~-----~---~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~ 277 (593)
++.+++.++++.++.+++.++...... + +.....++++.|+|+.+++.++..++|+|.|+|.+++++||+||
T Consensus 169 i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~kn 248 (499)
T PRK15049 169 MEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKD 248 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 999999999888777666654421111 1 11112234567888888888888899999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007682 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (593)
Q Consensus 278 P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR 356 (593)
|+|++|||+..++..+.++|++...+....+|+++++ ..+|+.+++++.+.+++..++.+..+++.+++.++.+++.+|
T Consensus 249 P~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR 328 (499)
T PRK15049 249 PQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGR 328 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988874 457999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007682 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (593)
Q Consensus 357 ~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~ 430 (593)
++|+|||||.+|++|+|+||+ ++|++|++++.+++.+..++. .++.+.++.+.+.++.|.+..++.+++|++.
T Consensus 329 ~l~a~Ardg~lP~~f~kv~k~-~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~ 407 (499)
T PRK15049 329 ILRSMAMGGSAPSFMAKMSRQ-HVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAI 407 (499)
T ss_pred HHHHHHhcCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999965 999999999888765432221 2667999999999999999999999998764
Q ss_pred C
Q 007682 431 P 431 (593)
Q Consensus 431 ~ 431 (593)
+
T Consensus 408 ~ 408 (499)
T PRK15049 408 K 408 (499)
T ss_pred h
Confidence 4
No 4
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.4e-48 Score=420.96 Aligned_cols=368 Identities=22% Similarity=0.396 Sum_probs=312.5
Q ss_pred ccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 44 ~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
+++++|+++.+++.++++|+++|+|+|..++... ..+||.++++|+++++..++.+++|+|+++++|++||.|.|+++.
T Consensus 16 ~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~-~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~ 94 (458)
T PRK10249 16 EPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAI-QMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKY 94 (458)
T ss_pred chhhhccCcHhHhhhhhhhcccchhHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 3459999999999999999999999999999854 678999999999999999999999999999999999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~ 203 (593)
+||.+||++||.+|+.+....++.....+.++..+++. .+ ...++.+++++.+.+|++|+|..
T Consensus 95 ~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~--------------~~~~~~~~~~l~~~lN~~gv~~~ 157 (458)
T PRK10249 95 WGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD---VP--------------TWIWAAAFFIIINAVNLVNVRLY 157 (458)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---Cc--------------HHHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999877766666555565543311 01 12346777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc---c---CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhC
Q 007682 204 TIAQAIVTTANVLAMLFVIIAGSYLGFK---T---GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~~i~~~~~~~~---~---~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~ 277 (593)
++++.+.+.++++.++.+++.++..... + +++.....+++.|.++.+++.++...+|+|.|+|.+++++||+||
T Consensus 158 ~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~ 237 (458)
T PRK10249 158 GETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARD 237 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 9999999999987776666655532111 1 111111123456788889999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007682 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (593)
Q Consensus 278 P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR 356 (593)
|+|++|||++.+...+.++|++...++....|+++.. .++|+.+++++.+++++..++.+..+++.+++.++.+.+.+|
T Consensus 238 P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR 317 (458)
T PRK10249 238 PEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSR 317 (458)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888887764 347999999999888888888999999999999999999999
Q ss_pred HHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007682 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (593)
Q Consensus 357 ~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~ 430 (593)
++|+|||||.+|++|+|+||+ ++|++|++++.+++.+..++. .++.+.++.+...++.|.+...+.+++|+++
T Consensus 318 ~l~a~ardg~lP~~~~kv~~~-~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 396 (458)
T PRK10249 318 MLFGLSVQGNAPKFLTRVSRR-GVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAM 396 (458)
T ss_pred HHHHHhcCCCcCHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999976 999999999999988765442 2567888888899999999999999998643
No 5
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=7.3e-48 Score=417.47 Aligned_cols=367 Identities=20% Similarity=0.378 Sum_probs=304.5
Q ss_pred ccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHh
Q 007682 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (593)
Q Consensus 46 ~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~-~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~l 124 (593)
+++|+++.++++++++|+++|+|+|..++.+. ..+|| +++++|++++++.++.+++|+|+++++|++||.|.|+++.+
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~-~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~ 89 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYII-STTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYL 89 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhc
Confidence 48999999999999999999999999999865 56787 58999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
||.+||.+||.+|++|....+......+.++..+++ ..+ .....+++.++++.+|++|+|..+
T Consensus 90 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p---------------~~~--~~~~~~~~~~~~~~in~~gvk~~~ 152 (471)
T PRK11387 90 GPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP---------------QVP--VWPWCLLFCALIFGLNVVSTRFFA 152 (471)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---------------cCc--HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999988876655444444332221 001 112345556678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc------ccC----CCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYLGF------KTG----WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~~~------~~~----~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E 274 (593)
+++.+.+.++++.++.+++.++.... ..+ ++.. ..+++.|++..+++.++..++|+|.|+|.+++++||
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNL-TAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccccc-CCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999887776666643211 001 1111 123455777777888888999999999999999999
Q ss_pred hhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007682 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (593)
Q Consensus 275 ~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~ 353 (593)
+|||+|++|||++.+..++.++|++..+++....|.++.. .++|..+++++.+++++..++.+..+++.+++.++.+.+
T Consensus 232 ~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~ 311 (471)
T PRK11387 232 TENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYA 311 (471)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987764 457999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh--C----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007682 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM--D----VSALAGMVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 354 ~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~--~----~~~l~~l~si~~l~~y~l~~~~~l~lr 427 (593)
.+|++++|||||.+|++|+|+||+ ++|+++++++.++..+..+.. . ++.+.++.+...++.|.++.++.+++|
T Consensus 312 ~sR~l~a~ardg~lP~~f~~~~~~-~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr 390 (471)
T PRK11387 312 SGRMLWSLSNEGTLPACFARLTKR-GIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFR 390 (471)
T ss_pred hhHHHHHHHhcCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999976 999999998866554433221 1 345778888889999999999999999
Q ss_pred cCCCC
Q 007682 428 YVPPD 432 (593)
Q Consensus 428 ~~~~~ 432 (593)
+++++
T Consensus 391 ~~~~~ 395 (471)
T PRK11387 391 RRHLR 395 (471)
T ss_pred HHHHh
Confidence 87664
No 6
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=8.4e-48 Score=414.68 Aligned_cols=375 Identities=26% Similarity=0.368 Sum_probs=307.5
Q ss_pred cccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 45 ~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
++++|++++++++++++|.++|+|+|..++.++...+|+. .+++|+++++..++.+++|+|+++++|++||.|.|+++.
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~ 83 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNA 83 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHh
Confidence 4599999999999999999999999999998765555564 889999999999999999999999999999999999999
Q ss_pred hCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 007682 124 VGEGVAWLIGWALI-LEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (593)
Q Consensus 124 lG~~~g~~~gw~~~-~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~ 202 (593)
+||.+||+.+|..+ ..+....+..+....++++..++ ........++++++.+++.+|.+|+|.
T Consensus 84 ~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~---------------~~~~~~~~~~~~~~~~~~~ln~~gv~~ 148 (445)
T PRK11357 84 GSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTP---------------IDPLLGKFIAAGLIIAFMLLHLRSVEG 148 (445)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------CchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999754 44455556666666666654321 111112345677777788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCch-hHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCC
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD 281 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g-~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ 281 (593)
..+++++++.++++.++++++.++.....+++....... ....+ +.+++.++...+|+|.|+|.+++++||+|||+|+
T Consensus 149 ~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~ 227 (445)
T PRK11357 149 GAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKT 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcccc
Confidence 999999999999988777776665432222332111100 11112 4568888889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHc--chhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007682 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASH--GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (593)
Q Consensus 282 ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~--g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (593)
+|||++.+..++.++|++.+.+.....|.+++. .++|..++++.. .+++...++.+..+++.+++.++.+.+.+|++
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 307 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLE 307 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 999999999999999999999998888887764 356888888764 35566677778888889999999999999999
Q ss_pred HHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 007682 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDEVP 435 (593)
Q Consensus 359 ~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~~~~ 435 (593)
++|+|||.+|++|+|+|+|+++|++|++++++++.++.+..+++++.+..+....+.|.+...+++++|+++++++|
T Consensus 308 ~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~ 384 (445)
T PRK11357 308 YAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPL 384 (445)
T ss_pred HHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCC
Confidence 99999999999999999998999999999999999888888999999999999999999999999988866544333
No 7
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=3.1e-47 Score=410.41 Aligned_cols=368 Identities=22% Similarity=0.405 Sum_probs=314.1
Q ss_pred ccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhC
Q 007682 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (593)
Q Consensus 46 ~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG 125 (593)
+++|+++.+++.++++|+++|+|+|..++.+. +.+||+++++|+++++..++.+++++|+++++|.+||.|.|+++.+|
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g 87 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVI-QSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWG 87 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHH-HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 48999999999999999999999999999855 56899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
|..||++||.++++|+...++.....+.+++.+++. .+ .+....+++++++.+|++|+|...+
T Consensus 88 ~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~--------------~~~~~~i~~~~~~~lN~~gv~~~~~ 150 (456)
T PRK10238 88 SFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE---IP--------------TWVSAAVFFVVINAINLTNVKVFGE 150 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---Cc--------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999998888877777776544321 11 1234666677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc--c----CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCC
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGFK--T----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~~--~----~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~ 279 (593)
++.+.+.++++.++++++.++..... . .+.+..+.+++.|.++.++..++...+|+|.|+|.+++++||+|||+
T Consensus 151 ~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~ 230 (456)
T PRK10238 151 MEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE 230 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh
Confidence 99999999998876665544332111 1 11111122446677888888888889999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007682 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (593)
Q Consensus 280 r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (593)
|++|||+..+...+.+.|++.........|++++. .++|+.+++++.+.++...++.+..+.+.+++.++++.+.+|++
T Consensus 231 r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l 310 (456)
T PRK10238 231 QSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRML 310 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888788888774 35799999999988888889999999999999999999999999
Q ss_pred HHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007682 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (593)
Q Consensus 359 ~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~ 432 (593)
|+|||||.+|++|+|+||+ ++|++|++++++++.+..+.. .++.+.++.+.+.+++|.+..++.+++|+++++
T Consensus 311 ~a~ardg~lP~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~ 389 (456)
T PRK10238 311 FGLAQQGNAPKALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQE 389 (456)
T ss_pred HHHHhCCCccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999977 999999999999887765542 256788899999999999999999999987654
No 8
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=8.5e-47 Score=406.95 Aligned_cols=369 Identities=23% Similarity=0.333 Sum_probs=311.3
Q ss_pred cccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHh
Q 007682 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (593)
Q Consensus 45 ~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~l 124 (593)
+++||+++.+++.++++|+++|+|+|..++.. ...+||+++++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~-l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~ 84 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAAST-LKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYM 84 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 34899999999999999999999999999984 46789999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
||.+||.+||.||+.|+...+....+.+.+++.+++. .+ ......+++++++.+|++|+|...
T Consensus 85 g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~---~~--------------~~~~~~~~~~~~~~lN~~gv~~~~ 147 (461)
T PRK10746 85 SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE---MA--------------QWIPALIAVALVALANLAAVRLYG 147 (461)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---Cc--------------hHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999888777776666666544321 11 123456667788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---cccc-----CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhh
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYL---GFKT-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~---~~~~-----~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k 276 (593)
+++.+.+.++++.++.+++.++.. ...+ ++++..+++++.|+|+.++..++..++|+|.|+|.++..+||+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 999999999988776666655432 1111 11222223446678899999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchh
Q 007682 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (593)
Q Consensus 277 ~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~-~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (593)
||+|++|||+..+...+.++|++..+++...+|+++++. ++|+.+++++.+.++...++.+..+++.+++.++.+++.+
T Consensus 228 nP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~s 307 (461)
T PRK10746 228 NPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCG 307 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764 4699999999988888888999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHH---HHh-h----CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007682 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAAL---AFF-M----DVSALAGMVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 356 R~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il---~~~-~----~~~~l~~l~si~~l~~y~l~~~~~l~lr 427 (593)
|++++|||||.+|++|+|+||+ ++|++|+++..+...+. .+. . .++.+.++.+...++.|.+..++.+++|
T Consensus 308 R~l~~~a~~g~lP~~~~~~~~~-g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r 386 (461)
T PRK10746 308 RMLYALAKNRQLPAAMAKVSRH-GVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFR 386 (461)
T ss_pred HHHHHHHhCCCcCHHHHHhCCC-CCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 99999999875443321 111 1 1456888899999999999999999999
Q ss_pred cCCCC
Q 007682 428 YVPPD 432 (593)
Q Consensus 428 ~~~~~ 432 (593)
+++|+
T Consensus 387 ~~~~~ 391 (461)
T PRK10746 387 RAHKA 391 (461)
T ss_pred Hhccc
Confidence 88764
No 9
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=1.2e-46 Score=407.43 Aligned_cols=371 Identities=23% Similarity=0.376 Sum_probs=314.1
Q ss_pred ccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 44 ~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
+++++|+++.+++.++++|+++|+|+|..++... +.+||+.+++|++++++.++.+++++|+++..|..||.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~-~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTI-SLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHH-hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 3459999999999999999999999999999865 678999999999999999999999999999999999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~ 203 (593)
+||.+||++||.+++++.....+.+...+.++..+++.. + ....+.+++++++.+|++|+|..
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~---~--------------~~~~~~~~~~~~~~iN~~g~~~~ 156 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL---S--------------DWVASLAVVLLLLSLNLATVKMF 156 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---c--------------HHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999998777776666666665443211 1 11345667778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-----c----CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007682 204 TIAQAIVTTANVLAMLFVIIAGSYLGFK-----T----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~~i~~~~~~~~-----~----~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E 274 (593)
++++.+.+.++++.++.+++.++..... + ++.+..+.+++.|.++.+++.++...+|+|.|+|.+++++||
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 9999999999999888887777653211 1 122222234466788888999999999999999999999999
Q ss_pred hhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007682 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (593)
Q Consensus 275 ~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~ 353 (593)
+|||+|++||++..+.+.+.++|++...++....|++++. .++|..++++..++++...++.+..+++.+++.++.+.+
T Consensus 237 ~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~ 316 (469)
T PRK11049 237 TKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFS 316 (469)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888899999999999998888888874 347888888888888888899999999999999999999
Q ss_pred hhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHH---HHh-h----CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007682 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAAL---AFF-M----DVSALAGMVSVGTLLAFTMVAISVLI 425 (593)
Q Consensus 354 ~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il---~~~-~----~~~~l~~l~si~~l~~y~l~~~~~l~ 425 (593)
.+|++++|||||.+|++|+|+||| ++|++|+++++++..+. ... . .++.+.++.++...+.|.+...++++
T Consensus 317 ~sR~l~a~ardg~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~ 395 (469)
T PRK11049 317 TSRMLFGLAQEGVAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLV 395 (469)
T ss_pred HHHHHHHHHhCCCCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 99999999988765431 111 2 24567788888889999999999999
Q ss_pred HhcCCCCC
Q 007682 426 LRYVPPDE 433 (593)
Q Consensus 426 lr~~~~~~ 433 (593)
+|+++|+.
T Consensus 396 lr~~~p~~ 403 (469)
T PRK11049 396 YRKQRPHL 403 (469)
T ss_pred HHHhhhhc
Confidence 99887763
No 10
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1e-46 Score=405.67 Aligned_cols=365 Identities=18% Similarity=0.320 Sum_probs=305.7
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCc
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~ 126 (593)
++|+++.++++++++|+++|+|++..++.++ .+|+..+++|+++++.+++.+++|+|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 5688999999999999999999999988754 36888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 007682 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i 206 (593)
.+||++||.+|++++......+.+...|+...++... ......+..++++++++.+|++|+|...++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATL-------------SPVQICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------chHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999988766666566666665543110 011122346667788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCch---hHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChh
Q 007682 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFG---VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283 (593)
Q Consensus 207 ~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g---~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip 283 (593)
+++.+..+++.++++++.+......+++. +++.|.+ +.++..++..++|+|.|+|.+++++||+|||+||+|
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP 223 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYV-----AAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVP 223 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccc-----CCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcccccc
Confidence 99999888887777766665432222221 1122222 356777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007682 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 284 ~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama 362 (593)
|+++.+..++.++|++...+.....|++++. .++|..+++++..+++...++.+..+++.+++.+++..+.+|++++|+
T Consensus 224 rAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a 303 (438)
T PRK10655 224 IAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSA 303 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998888888877764 457888888888888888888888999999999999999999999999
Q ss_pred hcCCCcccccccccccccchHHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007682 363 RDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (593)
Q Consensus 363 ~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~-------~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~ 432 (593)
|||.+|++|+|+||+ ++|+++++++++++.++.+.. .++.+.++.++..++.|.+..++.+++|+|+|+
T Consensus 304 ~dg~lP~~~~~v~~~-~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~ 379 (438)
T PRK10655 304 DEGYFPKIFSRVTKV-DAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANV 379 (438)
T ss_pred cCCchhHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999976 999999999998877655432 367899999999999999999999999987754
No 11
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=1.7e-46 Score=405.42 Aligned_cols=370 Identities=22% Similarity=0.383 Sum_probs=306.9
Q ss_pred ccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 44 ~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
+++++|+++.+|++++++|+++|+|+|..++... +.+||+.+++|+++++..++.+++++|+++++|++||.|.|+++.
T Consensus 4 ~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~-~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~ 82 (457)
T PRK10580 4 KNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAI-KMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN 82 (457)
T ss_pred CccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3458999999999999999999999999999854 678999999999999999999999999999999999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~ 203 (593)
+||.+||++||.+++++....+......+.++..++.. .+ . ....++++++++.+|++|+|..
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------------~--~~~~~~~~~l~~~ln~~gv~~~ 145 (457)
T PRK10580 83 LGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT---VP------------H--WIWVLSVVLIICAVNLMSVKVF 145 (457)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CC------------h--HHHHHHHHHHHHHHHHccchhH
Confidence 99999999999999999877666666666665544321 01 1 1235566677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh---cccc-----CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007682 204 TIAQAIVTTANVLAMLFVIIAGSYL---GFKT-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~~i~~~~~---~~~~-----~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~ 275 (593)
.+++.+++.++++.++++++.++.. ...+ +..+...+++..|.++.+++.++..++|+|.|+|.+++++||+
T Consensus 146 ~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~ 225 (457)
T PRK10580 146 GELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA 225 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh
Confidence 9999999999998877666554321 1111 0111111234557788889999999999999999999999999
Q ss_pred hCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcch
Q 007682 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQ 354 (593)
Q Consensus 276 k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~-~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~ 354 (593)
|||+|++|||++.+.+.+.++|++..+++....|.+++.. +.|...+++..+.+++..++.+..+.+.+++.++++.+.
T Consensus 226 knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (457)
T PRK10580 226 KDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGV 305 (457)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888887753 468888888888888888888888999999999999999
Q ss_pred hHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007682 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRY 428 (593)
Q Consensus 355 sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l~~~~~l~lr~ 428 (593)
+|++++|||||.+|++|+|+||+ ++|++|++++.++..+..++. .++.+.++.+...++.|.+..++.+++|+
T Consensus 306 sR~~~~~ardg~lP~~~~kv~~~-~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~ 384 (457)
T PRK10580 306 GRMLHGMAEQGSAPKIFSKTSRR-GIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRR 384 (457)
T ss_pred HHHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999976 999999999976554432221 14578899999999999999999999998
Q ss_pred CCCC
Q 007682 429 VPPD 432 (593)
Q Consensus 429 ~~~~ 432 (593)
++++
T Consensus 385 ~~~~ 388 (457)
T PRK10580 385 RLPP 388 (457)
T ss_pred HHHh
Confidence 7654
No 12
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=1.6e-46 Score=408.65 Aligned_cols=367 Identities=22% Similarity=0.359 Sum_probs=298.6
Q ss_pred cccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 45 ~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
++++|+++.++++++++|+++|+|+|..++..+ ..+||. ++++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~-~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~ 89 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATI-SQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNY 89 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Confidence 458999999999999999999999999999865 578886 899999999999999999999999999999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~ 203 (593)
+||.+||++||.+|+.+....+........++..++ + ..+. ...+.+++.+++.+|++|+|..
T Consensus 90 ~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~------~---------~~~~--~~~~~~~~~~~~~lN~~gv~~~ 152 (489)
T PRK10836 90 VEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWF------P---------DTPG--WIWSALFLGVIFLLNYISVRGF 152 (489)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------C---------CCch--HHHHHHHHHHHHHHHHHcchhh
Confidence 999999999999999876655433222222222111 1 1111 1235666677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc--c-cc----CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhh
Q 007682 204 TIAQAIVTTANVLAMLFVIIAGSYLG--F-KT----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~~i~~~~~~--~-~~----~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k 276 (593)
++++.+.+..+++.++.+++.++... . ++ .+.+....++..+.++.+++.++...+|+|.|+|.+++++||+|
T Consensus 153 ~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~k 232 (489)
T PRK10836 153 GEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESE 232 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhc
Confidence 99999999999888766665554321 1 11 11111111122345666777777777899999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---------CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Q 007682 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASHGMHWASYVITIGAVTALCSTL 347 (593)
Q Consensus 277 ~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~---------~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~ 347 (593)
||+|++|||++.++..+.++|++...++...+|+++.+ ..+|+..++++.+.+++..++.+..+++.+++.
T Consensus 233 nP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~ 312 (489)
T PRK10836 233 DPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAG 312 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988876531 136788889998888888899999999999999
Q ss_pred hhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhC------HHHHHHHHHHHHHHHHHHHHH
Q 007682 348 MGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD------VSALAGMVSVGTLLAFTMVAI 421 (593)
Q Consensus 348 ~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~------~~~l~~l~si~~l~~y~l~~~ 421 (593)
++.+++.+|++|+|||||.+|++|+|+||+ ++|++|++++++++.+..+... ++.+.++.+...++.|.+..+
T Consensus 313 n~~~~~~sR~l~a~Ardg~lP~~~~kv~~~-~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 391 (489)
T PRK10836 313 NSGMYASTRMLYTLACDGKAPRIFAKLSRG-GVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAI 391 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999976 9999999999998887665432 345788888899999999999
Q ss_pred HHHHHhcCC
Q 007682 422 SVLILRYVP 430 (593)
Q Consensus 422 ~~l~lr~~~ 430 (593)
+.+++|++.
T Consensus 392 a~l~~R~~~ 400 (489)
T PRK10836 392 SHYRFRRGY 400 (489)
T ss_pred HHHHHHHHH
Confidence 999999863
No 13
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=3.6e-46 Score=401.77 Aligned_cols=368 Identities=21% Similarity=0.310 Sum_probs=305.1
Q ss_pred ccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhC
Q 007682 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (593)
Q Consensus 46 ~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG 125 (593)
+++|+++.+|++++++|.++|+|+|..++.++. .|+..+++|+++++..++.+++|+|+++++|++||.|.|+++.+|
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g 82 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFG 82 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcC
Confidence 377999999999999999999999999988653 356678999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
|.+||++||.+|+.+.....+.......+....++... .+.....++++++++++.+|.+|+|...+
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------------DPLVLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------------CcHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 99999999999998887766655555555554432110 01112245677777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHH
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~a 285 (593)
++++.+.++++.++.+++.++.....+++....+..+ ..++.++..++...+|+|.|+|.+++++||+|||+|++|||
T Consensus 150 i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPra 227 (445)
T PRK10644 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSG--LGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccc--cchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHH
Confidence 9999999998877777666654322222211111111 12455677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhc
Q 007682 286 IGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (593)
Q Consensus 286 i~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~d 364 (593)
++.+.+++.++|++..++.....|++++. .+.|..+++++..+++...++.++.+++.+++.++++...+|.+++|+||
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ard 307 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999887764 45788888888888888888888888999999999999999999999999
Q ss_pred CCCcccccccccccccchHHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007682 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (593)
Q Consensus 365 g~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~-------~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~ 431 (593)
|.+|++|+|+||+ ++|++|++++++++.++.+.. .++.+.++.++..++.|.+...+.+++|+|++
T Consensus 308 g~lP~~~~~v~~~-~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~ 380 (445)
T PRK10644 308 GLFPPIFARVNKA-GTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_pred CCccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999976 999999999999988766542 36778899999999999999999999987765
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=2.6e-46 Score=403.84 Aligned_cols=369 Identities=23% Similarity=0.358 Sum_probs=311.7
Q ss_pred cccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHh
Q 007682 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (593)
Q Consensus 45 ~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~l 124 (593)
.+++|+++.+|+.++++|+++|+|+|..++... ..+||..+++|++++++.++.+++++|+++++|++||.|.|+++.+
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~-~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAI-ASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 348899999999999999999999999999854 5788988899999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
||.+||++||.+|++++...++.+...+.++..+++. .+ .+.++++++++++.+|.+|+|..+
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--------------~~~~~~~~~~~~~~~n~~gv~~~~ 149 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD---IP--------------LWLFSLILTIVLTLTNLYSVKSYG 149 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---Cc--------------HHHHHHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999998888877777776654421 11 124577778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--ccc-----CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhC
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYLG--FKT-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~~--~~~-----~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~ 277 (593)
+++.+.+.++++.++.+++.++... ... ++++..+.+++.|+++.+++.++...+|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~ 229 (452)
T TIGR01773 150 EFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSN 229 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcC
Confidence 9999999999988776666554321 111 112222224456778888999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchh
Q 007682 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (593)
Q Consensus 278 P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~--~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (593)
|+|++|||+..+...+.++|++.......+.|+++.+ +.+|...+.+..+++++..++.+..+++.+++.++.+.+.+
T Consensus 230 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~s 309 (452)
T TIGR01773 230 PIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTS 309 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888866543 23488888888888888889999999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh--C----HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007682 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM--D----VSALAGMVSVGTLLAFTMVAISVLILRYV 429 (593)
Q Consensus 356 R~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~--~----~~~l~~l~si~~l~~y~l~~~~~l~lr~~ 429 (593)
|++++|||||.+|++|+|+||+ ++|++|+++.++++.+..+.. + ++.+.++.+...++.|.+..++.+++|++
T Consensus 310 R~~~a~ardg~lP~~~~~v~~~-~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~ 388 (452)
T TIGR01773 310 RMLYSLAERGDAPRVFMKLNKK-GVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKK 388 (452)
T ss_pred HHHHHHHhCCCcCHHHHhhCCC-CCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 999999999988887765442 1 34677788888899999999999999987
Q ss_pred CCC
Q 007682 430 PPD 432 (593)
Q Consensus 430 ~~~ 432 (593)
+|+
T Consensus 389 ~~~ 391 (452)
T TIGR01773 389 LKA 391 (452)
T ss_pred HHh
Confidence 654
No 15
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=2.4e-46 Score=408.94 Aligned_cols=377 Identities=24% Similarity=0.382 Sum_probs=301.6
Q ss_pred cccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh-H-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccch
Q 007682 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYS 120 (593)
Q Consensus 43 ~~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~-~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~ 120 (593)
++++++|+++.++++++++++++|+|++..++.+. ..+|+ + .+++|++++++.++.+++|+|+++++|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~-~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVL-KNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 45669999999999999999999999999998865 45565 3 467899999999999999999999999999999999
Q ss_pred HHHhCchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHH
Q 007682 121 YICVGEGVAWLIGWALILEY-TIGGSAVARGISPNLAM-LFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (593)
Q Consensus 121 ~~~lG~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~ 198 (593)
++.+||.+||+++|..++.. ....+..+...+.++.. .+.+.. .+ .+...+++++++++++.+|.+
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~-~~-----------~~~~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCE-VP-----------EWAIRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc-----------hHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999877533 33344444444555422 221100 01 111235677888899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC--CCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhh
Q 007682 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY--FPFGVNGMLAGSATVFFAFIGFDAVASTAEEVK 276 (593)
Q Consensus 199 G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~--~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k 276 (593)
|+|.+.+++.+.+.++++.++++++.++.....++....+....+ .+.+..++..++...+|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 999999999999999999888777776653222221111101111 113456788888999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007682 277 NPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (593)
Q Consensus 277 ~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR 356 (593)
||+|++||+++.+.+++.++|++..++.....|.+++..+.+....+.+...++..+++.+...++.+++.++.+.+.+|
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~~~~~sR 342 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSR 342 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888887775444444333333222556778888888999999999999999
Q ss_pred HHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007682 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (593)
Q Consensus 357 ~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~ 432 (593)
++++|||||.+|++|+|+|+|+++|++++++.++++.+.....+..++.++.+....+.|.+..++++++|+|+|+
T Consensus 343 ~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~ 418 (501)
T TIGR00911 343 LFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPE 418 (501)
T ss_pred HHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCC
Confidence 9999999999999999999998999999999999888777778888888888889999999999999999988775
No 16
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=7.1e-46 Score=399.53 Aligned_cols=369 Identities=25% Similarity=0.354 Sum_probs=304.8
Q ss_pred ccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHH
Q 007682 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (593)
Q Consensus 44 ~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~ 122 (593)
+++++|+++.++.++++++.++| |.+...+. ....+||. .++++++++++.++.+++|+|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~-~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNF-GLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhh-HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34599999999999999999998 76665544 33567885 78899999999999999999999999999999999999
Q ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 007682 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (593)
Q Consensus 123 ~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~ 202 (593)
.+||.+||++||.+++++....+..+...++++..+++.. + .+..+++++++++.+|++|+|.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~---~--------------~~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG---P--------------GWLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---c--------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888887665311 1 1235677778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC--CCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCC
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR 280 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~--~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r 280 (593)
.++++.+.+.++++.+++++..+..+....++.. ....+++.|.++.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 9999999998888766554443322111111111 11123455667778899999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCChHHHHHHHcch--hHHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 007682 281 DLPLGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGM--HWASYVITIGAVTALCSTLMGSILPQPRI 357 (593)
Q Consensus 281 ~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l-~~~~~~~~~~~~~g~--~~~~~iv~i~~~~~~~~s~~~~~~~~sR~ 357 (593)
++||+++.+..++.++|+....+.....+.+++ +.++|..+++++..+ .+...++.+..+++.+++.++.+.+.+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887766656666555 345688888887633 46667778888888899999999999999
Q ss_pred HHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007682 358 LMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (593)
Q Consensus 358 l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~ 432 (593)
+++|||||.+|++|+|+| |+++|++|++++++++.++.+..+.+.+.++.+.+.++.|.+...+++++|+++|+
T Consensus 303 l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~ 376 (442)
T TIGR00908 303 IFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPD 376 (442)
T ss_pred HHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999 56999999999999998887777777888999999999999999999999988776
No 17
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=2.6e-46 Score=401.72 Aligned_cols=384 Identities=38% Similarity=0.630 Sum_probs=327.3
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCc
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~ 126 (593)
++|+++.+|.+++.++.++|+|++..++.+. ..+|+..+++|+++++..++.+++++|+++++|++||.|.|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~-~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 5799999999999999999999999999855 567999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD-SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
..|++++|.+++.+....+..+...++++..++.... +.|..... .++........+++++++++.+|++|+|.+.+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTA--KPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhc--CCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999888888887764211 11211100 00011112234677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHH
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~a 285 (593)
++.+.+.++++.++++++.+..+...+++. ++.|.++.++..++...+|+|.|+|.+++++||+|||+|++||+
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~a 231 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASNNYT------PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKA 231 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHHhcC------CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHH
Confidence 999999999998877666665543333332 23355677788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhc
Q 007682 286 IGTALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARD 364 (593)
Q Consensus 286 i~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~d 364 (593)
++.+..++.++|++.+.+.....|.+++. .+.|...++++.+++++..++.+..+++.+++.++.+...+|+++++|||
T Consensus 232 i~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 232 IILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999998888877663 45688888888889999999999999999999999999999999999999
Q ss_pred CCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCC
Q 007682 365 GLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPDE-VPVPST 439 (593)
Q Consensus 365 g~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~~-~~~~~~ 439 (593)
|.+|++|+|+|+|+++|++|+++.++++.++....+++.+.++.+...++.|.+.+++++++|+|+|+. +|+|.+
T Consensus 312 g~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~ 387 (429)
T TIGR00909 312 GLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCP 387 (429)
T ss_pred CCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Confidence 999999999998889999999999999988877788999999999999999999999999999888763 344443
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=2.2e-45 Score=394.08 Aligned_cols=362 Identities=19% Similarity=0.261 Sum_probs=299.8
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCc
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~ 126 (593)
.+|+++.++++++++|+++|+|+|..++.++ .+|+.++++|+++++.+++.+++++|+++++|++||.|.|+++ +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 5689999999999999999999999999864 4689999999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 007682 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i 206 (593)
.+||.+||.||........+.......++...++... .+....+.+++++++++.+|.+|+|..+++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~-------------~~~~~~~~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN-------------DPIPAGIACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-------------ChHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999987766666666666677765543110 001122346677778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHH
Q 007682 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGI 286 (593)
Q Consensus 207 ~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai 286 (593)
+.+...++++.++.+++.+......++.... ..+..+.++.+++.++..++|+|.|+|.++.++||+|||+||+|||+
T Consensus 147 ~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi 224 (435)
T PRK10435 147 TTIGLVLVLIPVVGTAIVGWHWFDAATYAAN--WNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLAT 224 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHhhccc--ccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHH
Confidence 9988888777666555555432222111100 01112345678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCC-CCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcC
Q 007682 287 GTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDG 365 (593)
Q Consensus 287 ~~~~~i~~~~y~~~~~~l~~~~p~~~l-~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg 365 (593)
+.+..++.++|++.+++.....|++++ ..++|+.+++++.+++|+..++.+..+++.+++.++++...+|..++|||||
T Consensus 225 ~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG 304 (435)
T PRK10435 225 MLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDG 304 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998887 4567999999988999999999998999999999999999999999999999
Q ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHh----h--------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007682 366 LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF----M--------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 366 ~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~----~--------~~~~l~~l~si~~l~~y~l~~~~~l~lr 427 (593)
.+||+|+|+||+ ++|.++++++++++.++... . .++.+.++.+...++.|.+++++.+++|
T Consensus 305 ~lP~~f~k~nk~-g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 305 NFPKVYGEVDKN-GIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred CccHHHHhhCcC-CCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999965 99999999988776554321 1 2567889999999999999999988553
No 19
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=2.9e-45 Score=397.33 Aligned_cols=370 Identities=22% Similarity=0.375 Sum_probs=308.1
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccC-CCccccchHHHh
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICV 124 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~-~GG~y~~~~~~l 124 (593)
++|++++++++++++++++|+|+|..++.++ ..+|+. .+++|+++++..++.+++|+|+++++|+ +||.|.|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 4788999999999999999999999999865 467885 7899999999999999999999999999 999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
||.+||++||.+|+.+.....+.+.....++...++... ...+....+.+++++++++.+|.+|+|...
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~ 152 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-----------SGNPVPSILGASVLLWVFTFLVLRGVRQAA 152 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 999999999999998888777766666666665553110 001112234567777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCC-CCCCC-CCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCCh
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWS-GYELP-TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~-~~~~~-~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~i 282 (593)
+++.+.+.++++.++++++.++.....+++. +.... .+..+..+.+++.++...+|+|.|+|.+++++||+|| +|++
T Consensus 153 ~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~i 231 (473)
T TIGR00905 153 FINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDV 231 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccc
Confidence 9999999999988877777665432222221 11111 0111234567888888999999999999999999999 9999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCh-HHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007682 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMD-PDTP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (593)
Q Consensus 283 p~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~-~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (593)
||+++.+..++.++|++...+.....|.+++. .++| ..++.++..+++...++.++.+++.+++.++.+.+.+|++|+
T Consensus 232 Prai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~a 311 (473)
T TIGR00905 232 GKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFS 311 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888887763 4567 677778888888888999999999999999999999999999
Q ss_pred HHhcCCCcccccccccccccchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007682 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (593)
Q Consensus 361 ma~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~-----~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~ 430 (593)
|||||.+|++|+|+||| ++|++|++++++++.++.+. ..++++.++.+...++.|.+..++.+++|+|+
T Consensus 312 mardg~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~ 385 (473)
T TIGR00905 312 AAKDGLFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG 385 (473)
T ss_pred HHhCCChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999988 99999999999988765443 35678999999999999999999999998765
No 20
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-45 Score=374.36 Aligned_cols=371 Identities=26% Similarity=0.426 Sum_probs=334.6
Q ss_pred cccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHH
Q 007682 43 SHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (593)
Q Consensus 43 ~~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~ 122 (593)
++++++|.|+.++..++++|+.+|+|.|..++. +.+.+||++++++++++++.++..-+.+|+...-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~-~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGS-AIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccch-hhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 344599999999999999999999999999998 5588999999999999999999999999999999999999999999
Q ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 007682 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (593)
Q Consensus 123 ~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~ 202 (593)
.+||..||++||.||+.++....+...+.+.|+..++.+. |.| +.+++++++...+|+.++|.
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v---P~W--------------v~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV---PQW--------------VFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888432 333 45889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc---c-----CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLGFK---T-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~~~---~-----~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E 274 (593)
...+...+..+|++.++.+++.|....+. + +.++..+.++++|+|+.+++.++...+|+|.|.|.+...+.|
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99999999999999998888888764221 1 233334457899999999999999999999999999999999
Q ss_pred hhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007682 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (593)
Q Consensus 275 ~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~-~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~ 353 (593)
.|||+|.+|||+-.......++|+...+++....|+++++. .+|+...|+..|.++..-++++..+.+.+++.++.+++
T Consensus 229 t~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 229 AKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 99999999999999999999999999999999999998754 57999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007682 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 354 ~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l~~~~~l~lr 427 (593)
.+|++|++|+||..||.++|+||+ ++|++|++++.+...+-.++. .++-+.+..+.+.+..|.++.+|.+++|
T Consensus 309 tsRmL~~la~~g~APk~~~klsk~-gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~r 387 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLSKR-GVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLR 387 (462)
T ss_pred cchHHHHHhhcCcccHhHhhcccc-CCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998 999999999988877655442 2456888888899999999999999999
Q ss_pred cCCCC
Q 007682 428 YVPPD 432 (593)
Q Consensus 428 ~~~~~ 432 (593)
+++++
T Consensus 388 k~~~~ 392 (462)
T COG1113 388 KAKPA 392 (462)
T ss_pred hcchh
Confidence 85443
No 21
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=7e-45 Score=391.03 Aligned_cols=353 Identities=20% Similarity=0.299 Sum_probs=298.8
Q ss_pred HHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHHHHHHHHH
Q 007682 59 IGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALIL 138 (593)
Q Consensus 59 l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~gw~~~~ 138 (593)
+++|+++|+|+|..++.. .+.+||.++++|+++++..++.+++++|+++++|++||.|.|+++.+||.+||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~-~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVA-IAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHH-HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578999999999999984 4678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 007682 139 EYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAM 218 (593)
Q Consensus 139 ~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~ 218 (593)
.++...+..+...+.++..+.+ . .....++.+++++++.+|++|+|..++++.+.+.++++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVP---------------G--IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---------------c--CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9998887776555444433211 0 1123467888888999999999999999999999999988
Q ss_pred HHHHHHHhhhcc--cc-----CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHH
Q 007682 219 LFVIIAGSYLGF--KT-----GWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALS 291 (593)
Q Consensus 219 ~~~~i~~~~~~~--~~-----~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~ 291 (593)
+.+++.++.... .+ ++....+.+++.|+++.+++.++...+|+|.|+|.++..+||+|||+|++||++..+..
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 777776654211 11 11111112345678888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCC--CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc
Q 007682 292 ICCALYMLVSIVIVGLVPYYEMDP--DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (593)
Q Consensus 292 i~~~~y~~~~~~l~~~~p~~~l~~--~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~ 369 (593)
.+.++|++..++....+|+++.+. ..+...+++..+++++..++.+..+++.+++.++++.+.+|++|+|||||.+|+
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999999999876543 345667788889899999999999999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007682 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (593)
Q Consensus 370 ~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~ 430 (593)
+|+|+||+ ++|++|++++++++.+..+.. .++.+.++.+...++.|.+...+.+++|++.
T Consensus 304 ~~~~~~~~-~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 304 VMGKINRS-KTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999965 999999999988776654432 3678999999999999999999999999863
No 22
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-46 Score=384.07 Aligned_cols=372 Identities=27% Similarity=0.409 Sum_probs=321.3
Q ss_pred ccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh-H-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 46 ~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~-~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
+++||++.++++.+-++.++|+|+|+.+..+. .++|+ + ....|+++++.+++-++||+|+++.+|++||.|.|..++
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl-~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~a 87 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVL-ANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEA 87 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHH-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHH
Confidence 38899999999999999999999999999865 55555 3 666799999999999999999999999999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhH
Q 007682 124 VGEGVAWLIGWALILEYTIGG-SAVARGISPN-LAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK 201 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~-a~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k 201 (593)
+|+.+||...|.-++...... +..+..+++| +...++ .. .......++++.+++.+++.+|+.++|
T Consensus 88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c-----------~~p~~~~~lla~~~l~~lt~~n~~~V~ 155 (479)
T KOG1287|consen 88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LC-----------DVPRVASKLLAAALLVLLTLINSFSVK 155 (479)
T ss_pred hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CC-----------CCchHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999998877766665 6677777777 444443 11 111233457899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC--CCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCC
Q 007682 202 ESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP--TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (593)
Q Consensus 202 ~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~--~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~ 279 (593)
+..++|.+++..+++.+.++++.|++.....+.++.+.. ++-. .+...+-.++...+|+|.|+|.....+||+|||+
T Consensus 156 ~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~-~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ 234 (479)
T KOG1287|consen 156 WATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSD-TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR 234 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCc-CchHHHHHHHHHhhhcccCchhhccchHhhcCcc
Confidence 999999999999999999999999986554443322211 1111 1233477788899999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007682 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (593)
Q Consensus 280 r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~-g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (593)
|++|||+.+++.+++++|++..++...+++.+++..++..+..|.+. +|.+. +.+.+.+.++.++++++.+++.||.+
T Consensus 235 ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 235 RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999998886666666666665 55555 99999999999999999999999999
Q ss_pred HHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007682 359 MAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (593)
Q Consensus 359 ~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~ 432 (593)
+++||+|.+|+.|+..|++..+|..++++.+.+++++.+..+++++++..+....+.+.+..++++++|+|+|+
T Consensus 314 ~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 314 YAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999997799999999999999999999999999999999999999999999999999987
No 23
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.8e-44 Score=392.47 Aligned_cols=365 Identities=22% Similarity=0.319 Sum_probs=298.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccC-CCccccchHHHhC
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPS-AGSAYHYSYICVG 125 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~-~GG~y~~~~~~lG 125 (593)
||+++.+|+.++++|.++|+|+|..++... ..+||. .+++|++++++.++.+++|+|+++++|+ +||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~-~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTAL-ATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 488999999999999999999999999865 568885 7999999999999999999999999996 4567789999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
|.+||++||.+|++|+...+......+.++...... .+ ......+++++++.+|++|+|..++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK---VN--------------PAVWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CC--------------HHHHHHHHHHHHHHHHHhcchHHHH
Confidence 999999999999999998888887777766533210 01 0112344556778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc--C-----CCCCCCCCCCCCc----hhHHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGFKT--G-----WSGYELPTGYFPF----GVNGMLAGSATVFFAFIGFDAVASTAEE 274 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~~~--~-----~~~~~~~~~~~p~----g~~~~~~~~~~~~~a~~G~e~~a~~~~E 274 (593)
++.+.+.++++.++.+++.++.....+ + +....+++++.|. .+.++..++...+|+|.|+|.+++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 999999888887766666554432111 1 0111112233332 2567888999999999999999999999
Q ss_pred hhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---C-------CCChHHHHHHHcchhHHHHHHHHHHHHHHH
Q 007682 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEM---D-------PDTPISSAFASHGMHWASYVITIGAVTALC 344 (593)
Q Consensus 275 ~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l---~-------~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~ 344 (593)
+|||+|++|||++.+..++.++|++..+++....|+++. + ..+|+..+++..+.++...++.++.+++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 999999999999999999999999998888888886642 1 125777777888888888899999999999
Q ss_pred HHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHH
Q 007682 345 STLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTM 418 (593)
Q Consensus 345 ~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l 418 (593)
++.++.+.+.+|++++|||||.+|++|+|+||+ ++|++|++++++++.+..+.. .++.+.++.+...++.|.+
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~~~-~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~ 381 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVDRR-GVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMC 381 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999976 999999999998876543332 2567888999999999999
Q ss_pred HHHHHHHHhcCCC
Q 007682 419 VAISVLILRYVPP 431 (593)
Q Consensus 419 ~~~~~l~lr~~~~ 431 (593)
..++.+++|++++
T Consensus 382 ~~~~~i~~r~~~~ 394 (478)
T TIGR00913 382 ICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987644
No 24
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=2.9e-44 Score=389.73 Aligned_cols=386 Identities=22% Similarity=0.315 Sum_probs=290.9
Q ss_pred cccccccccccChHHHHHHHhhhh-hhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccc
Q 007682 41 ERSHQKLAKNLTIPHLVAIGVGST-IGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHY 119 (593)
Q Consensus 41 ~~~~~~l~r~l~~~~~~~l~i~~~-iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~ 119 (593)
.+++|||+|+++.++...++++.+ ++.|++...+. +...+||+.+++|+++++..++.+++++|+++++|++||.|+|
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~-~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~ 83 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGF-GYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQW 83 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHH
Confidence 456778999999999999999975 88899999887 4468999999999999999999999999999999999999999
Q ss_pred hHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHh
Q 007682 120 SYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (593)
Q Consensus 120 ~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G 199 (593)
+++.+||++||++||.+++++....+........++...+........ ......+.......+++++++++++.+|++|
T Consensus 84 ~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 84 SRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGE-DPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-CccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999877766665554444433211000000 0000001111123356777788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC-CCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCC
Q 007682 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELP-TGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (593)
Q Consensus 200 ~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~-~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P 278 (593)
+|..++++.+...++++.++++++.++.....+....+... ++..+.....++.+....+|+|.|+|.+++++||+|||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 99999999999999988777766655543321110001111 11222223456677778899999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCC--CCCCChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHhhhhcchh
Q 007682 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYE--MDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQP 355 (593)
Q Consensus 279 ~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~--l~~~~~~~~~~~~~-g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (593)
+|++||+++.+..++.++|.+..++.....+..+ ...+++.+.++.+. +.++.. .+....+++.+++.++...+.+
T Consensus 243 ~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~s 321 (475)
T TIGR03428 243 RRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLAIQTAGS 321 (475)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888777777766555321 11223344445444 444544 4445667788889999999999
Q ss_pred HHHHHHHhcCCCcc--cccccccccccchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007682 356 RILMAMARDGLLPP--FFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLAFTMVAISVLILRY 428 (593)
Q Consensus 356 R~l~ama~dg~lP~--~~~~~n~~~~~P~~a~~~~~~l~~il~~~~-----~~~~l~~l~si~~l~~y~l~~~~~l~lr~ 428 (593)
|++|++||||.+|+ +|+|+|+|+++|++|+++.++++.++.++. .++.+.++.++...++|.+..++.+..|+
T Consensus 322 R~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~ 401 (475)
T TIGR03428 322 RLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRL 401 (475)
T ss_pred HHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999994 899999988999999999999988776653 24578888888889999998887777765
Q ss_pred C
Q 007682 429 V 429 (593)
Q Consensus 429 ~ 429 (593)
|
T Consensus 402 ~ 402 (475)
T TIGR03428 402 R 402 (475)
T ss_pred h
Confidence 4
No 25
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.7e-44 Score=384.92 Aligned_cols=356 Identities=18% Similarity=0.235 Sum_probs=287.3
Q ss_pred cChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHH
Q 007682 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (593)
Q Consensus 51 l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~ 130 (593)
+++|+.+++.+|+++|+|+|..++.++ +.+||..+++|+++++..++.+++|+|+++++|++||.|.|+++.+||++||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~-~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAA-LVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHH-HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 578999999999999999999999854 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007682 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (593)
Q Consensus 131 ~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~ 210 (593)
.+||.++..+.....+.......++...++.. ......++++++++++.+|++|+|.+++++.+.
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWS---------------SWQLLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC---------------CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999998776665544444444444333210 111123567778888999999999999999987
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHH
Q 007682 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTAL 290 (593)
Q Consensus 211 ~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~ 290 (593)
..+.+..+..+. ..+..+ ..... ..+..+.++.+++.++..++|+|.|+|.+++++||+|||+||+|||++.+.
T Consensus 145 ~~~~~~i~~~~~----~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~ 218 (410)
T PRK11021 145 ALLIVALVVAIW----WAGDIK-PADIP-FPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGL 218 (410)
T ss_pred HHHHHHHHHHHH----HHcCCc-hhcCC-CCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHH
Confidence 755443322211 111111 11111 112234577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC-CCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc
Q 007682 291 SICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP 369 (593)
Q Consensus 291 ~i~~~~y~~~~~~l~~~~p~~~l-~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~ 369 (593)
.++.++|++.+.+.....++++. ..+.+..+++++..+++...++.+..+++.+++.++++.+.+|++++|+|||.+|+
T Consensus 219 ~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~ 298 (410)
T PRK11021 219 LLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPS 298 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccH
Confidence 99999999999888766665544 34467777887776666677888888999999999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007682 370 FFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYV 429 (593)
Q Consensus 370 ~~~~~n~~~~~P~~a~~~~~~l~~il~~~-----~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~ 429 (593)
+|+|+||+ ++|+++++++.+++.+..++ .+++.+.++.+...++.|.+..++.++++++
T Consensus 299 ~~~k~~~~-~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 299 YLARLSAR-GVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred HHHhhccC-CCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999976 99999999998887765433 3678899999999999999999999999864
No 26
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-45 Score=376.09 Aligned_cols=368 Identities=24% Similarity=0.363 Sum_probs=324.3
Q ss_pred ccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHh
Q 007682 46 KLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (593)
Q Consensus 46 ~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~l 124 (593)
++||+|+.+++.++++|+.+|+|+|+.+|. +...+||. ++++|++.+++..+...+.+||+..+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~-~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGK-ALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecch-hhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 599999999999999999999999999998 56889996 9999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
+|-+||..||+||+.|.+..+....+.+..+..+++.. .| ++.+..++.++...+|.+|+|...
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~--v~--------------~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT--VP--------------PWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC--CC--------------hHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999998888877777665322 11 223567777888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccC------CCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCC
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTG------WSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~~~~~~------~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P 278 (593)
-..-++..++++.++.+++.++....... ...+...++.+++|+.++...+..+.|+|.|.|.+.-.++|.|||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 99999999999998888888776422111 112223356778899999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC---------CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhh
Q 007682 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD---------PDTPISSAFASHGMHWASYVITIGAVTALCSTLMG 349 (593)
Q Consensus 279 ~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~---------~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~ 349 (593)
+|++|||+--....+.++|++..+++...+|+++-+ ..+|+..++++.|.+.+.-+++..++.+.+++.++
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998732 24699999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHH
Q 007682 350 SILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISV 423 (593)
Q Consensus 350 ~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l~~~~~ 423 (593)
.+++.+|++|+||+||..||+|+|+||+ |+|.+|+.++.+++.+-.+-. .+++|.++.++..++.+..++++.
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~r~-GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~sh 422 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVDRR-GVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSH 422 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhCCC-CCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 999999999988887533332 267899999999999999999999
Q ss_pred HHHhcCCC
Q 007682 424 LILRYVPP 431 (593)
Q Consensus 424 l~lr~~~~ 431 (593)
+++|+..+
T Consensus 423 irFR~A~~ 430 (541)
T COG0833 423 IRFRRAMK 430 (541)
T ss_pred HHHHHHHH
Confidence 99998543
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=7.9e-44 Score=385.67 Aligned_cols=368 Identities=20% Similarity=0.327 Sum_probs=299.6
Q ss_pred cccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCC-CccccchHHHhCc
Q 007682 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSA-GSAYHYSYICVGE 126 (593)
Q Consensus 49 r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~-GG~y~~~~~~lG~ 126 (593)
|++++++++++++|+++|+|+|..++.++ ..+||. .+++|+++++..++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~-~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMA-AGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 68999999999999999999999999866 456776 78899999999999999999999999986 6999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 007682 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i 206 (593)
.+||++||.+|+++.......+.....+++..++... ..........+.+++++++.+|.+|+|..+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----------GGNNPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999887766665555555554432110 00011112346667778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCC--CCCCC-CC-CCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCCh
Q 007682 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSG--YELPT-GY-FPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDL 282 (593)
Q Consensus 207 ~~~~~~~~li~~~~~~i~~~~~~~~~~~~~--~~~~~-~~-~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~i 282 (593)
|.+.+.++++.++++++.++.....+.+.. ..+.+ +. .+..+.++..++...+|+|.|+|.++.++||.|| +||+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 999999999888777776654322221111 01001 11 1223456667888899999999999999999998 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CCh-HHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007682 283 PLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTP-ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (593)
Q Consensus 283 p~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~-~~~-~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (593)
||++..+...+.++|++.+.+.....|.++++. ++| ..+++++..++|+..++.++.+++.+++.++++...+|++++
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888777632 445 677888888899999999999999999999999999999999
Q ss_pred HHhcCCCcccccccccccccchHHHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 007682 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF-----MDVSALAGMVSVGTLLAFTMVAISVLILRYVP 430 (593)
Q Consensus 361 ma~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~-----~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~ 430 (593)
|||||.+|++|+|+||+ ++|+++++++.+++.++.+. ..++.+.++.+...++.|.+..++.+++|+|+
T Consensus 308 ~ardg~lP~~f~k~~~~-~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 308 MAKDKLMPKYFGKENAN-GAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred HHhCCCccHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999976 99999999998887665443 23677889999999999999999999998765
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=2.1e-43 Score=384.41 Aligned_cols=379 Identities=18% Similarity=0.242 Sum_probs=286.9
Q ss_pred cccccccccccChHHHHHHHhhhhh-hhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccc
Q 007682 41 ERSHQKLAKNLTIPHLVAIGVGSTI-GAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYH 118 (593)
Q Consensus 41 ~~~~~~l~r~l~~~~~~~l~i~~~i-G~G~~~~~~~v~~~~~G~-~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~ 118 (593)
.++++|++|+++.++.++++++.+. ..|++...+. +...+|| +++++|++++++.++.+++++|+++++|++||.|.
T Consensus 4 ~g~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~ 82 (482)
T TIGR00907 4 LGYKPELKREFSLWSIFGFAFSISNSWTGISTTYNY-GLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYF 82 (482)
T ss_pred cCCcceeecccchhHHHHHHHHHHHHHHHHHHHHHH-hhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 3566779999999999999999552 2566666654 4567888 58999999999999999999999999999999999
Q ss_pred chHHHhCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHH
Q 007682 119 YSYICVGE----GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTG 194 (593)
Q Consensus 119 ~~~~~lG~----~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 194 (593)
|+++.+|| ..||++||.++++++...++.....+.++..........+.+. ...+....+.++++++++.
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~ 156 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI------PTRWHIFGIMIGIHLIHAL 156 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc------ccCchhhhhHHHHHHHHHH
Confidence 99999875 5689999999999998888777777777665442111000010 0111122356677788999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---c---CCCCCCCCC-CCCCchhHHHHHHHHHHHHHhhhhhh
Q 007682 195 LLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFK---T---GWSGYELPT-GYFPFGVNGMLAGSATVFFAFIGFDA 267 (593)
Q Consensus 195 l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~---~---~~~~~~~~~-~~~p~g~~~~~~~~~~~~~a~~G~e~ 267 (593)
+|.+|+|..++++.+...++++.++++++..+..... + .+++..+.. ++.|.++ +++.++....|+|.|+|.
T Consensus 157 in~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~ 235 (482)
T TIGR00907 157 INSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDG 235 (482)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcch
Confidence 9999999999999998888887766554444332111 0 111111111 3445555 466777778899999999
Q ss_pred HhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC-CC--CChHHHHHHHc-chhHHHHHHHHHHHHH
Q 007682 268 VASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVP-YYEM-DP--DTPISSAFASH-GMHWASYVITIGAVTA 342 (593)
Q Consensus 268 ~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p-~~~l-~~--~~~~~~~~~~~-g~~~~~~iv~i~~~~~ 342 (593)
+++++||+|||+|++|||++.++.+..+++++..++.....+ .+++ +. ..|+.+++.+. +.++...++.+..+++
T Consensus 236 ~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~ 315 (482)
T TIGR00907 236 TAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVT 315 (482)
T ss_pred hhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 999999999999999999999998877665554444433332 2222 22 24888887765 5557777788888889
Q ss_pred HHHHHhhhhcchhHHHHHHHhcCCCc--ccccccccccccchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHH
Q 007682 343 LCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLA 415 (593)
Q Consensus 343 ~~~s~~~~~~~~sR~l~ama~dg~lP--~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~-----~~~~l~~l~si~~l~~ 415 (593)
.+++.++.+.+.+|++++|||||.+| ++|+|+|||+++|+++++++++++.++.+.. .++.+.++.+...+++
T Consensus 316 ~~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~ 395 (482)
T TIGR00907 316 SFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVS 395 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 9999999999999999999999988766553 4677889999999999
Q ss_pred HHHHHHHHHHHh
Q 007682 416 FTMVAISVLILR 427 (593)
Q Consensus 416 y~l~~~~~l~lr 427 (593)
|.+...+.++.|
T Consensus 396 y~~~~~~~l~~~ 407 (482)
T TIGR00907 396 YVIPIICKLAKG 407 (482)
T ss_pred HHHHHHHHHHhc
Confidence 999877665433
No 29
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=1.7e-42 Score=376.09 Aligned_cols=371 Identities=20% Similarity=0.306 Sum_probs=271.7
Q ss_pred cccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCccccchHHHhCch
Q 007682 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (593)
Q Consensus 49 r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~-l~~al~~ael~s~~p~~GG~y~~~~~~lG~~ 127 (593)
||+++++++++++.++.+.... + +....|++.+++|++++++. ++.+++++|+++++|++||.|.|+++++||+
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~~~--~---~~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLRGL--P---AEAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhhcc--h---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 5699999999998877654332 2 23457999999999988865 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007682 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (593)
Q Consensus 128 ~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~ 207 (593)
+||.++|.+|+++++.........+..+...... .... ...+........+.++++++++.+|++|+|..++++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPE-ATVD-----ESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cccC-----cccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999876654433322222211110 0000 001111122223456666778899999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhccccCCCCCC-CCCCCCCc--hhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChh
Q 007682 208 AIVTTA-NVLAMLFVIIAGSYLGFKTGWSGYE-LPTGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283 (593)
Q Consensus 208 ~~~~~~-~li~~~~~~i~~~~~~~~~~~~~~~-~~~~~~p~--g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip 283 (593)
++...+ +++.++++++.++......+..... ..++..|. ++.++... ...+|+|.|+|.++.++||+|||+|++|
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchh
Confidence 876544 3444444444443321111100000 00122232 23333332 2457999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChH----HHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 007682 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPI----SSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (593)
Q Consensus 284 ~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~----~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ 359 (593)
||++.+..++.++|++.++++....|+++...+++. .++++..+.++...++.+..+++.+++.++++.+.+|.++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998876544443 3445555677888888888888999999999999999999
Q ss_pred HHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHh----hC----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007682 360 AMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF----MD----VSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (593)
Q Consensus 360 ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~----~~----~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~ 431 (593)
+++|||.+|++|+|+||+ ++|+++++++++++.++.++ .+ ++.+.++.+...++.|++...+.+++|+|+|
T Consensus 309 a~ardg~lP~~~~kv~k~-~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~ 387 (474)
T TIGR03813 309 AVAKAGYLPTFFQKTNKN-GMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQP 387 (474)
T ss_pred HHhhcCCCCHHHhccCCC-CCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999965 99999999999876554332 12 4568888888899999999999999998776
Q ss_pred C
Q 007682 432 D 432 (593)
Q Consensus 432 ~ 432 (593)
+
T Consensus 388 ~ 388 (474)
T TIGR03813 388 D 388 (474)
T ss_pred C
Confidence 5
No 30
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=2.9e-42 Score=375.14 Aligned_cols=370 Identities=22% Similarity=0.257 Sum_probs=271.9
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHH-HHHHHHHHHHHhhhcc-CCCccccchHHHh
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCP-SAGSAYHYSYICV 124 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~-~l~~al~~ael~s~~p-~~GG~y~~~~~~l 124 (593)
.+||++.++++++.++.+.+ ++..+. ....|.+.+..|++++++ .++.+++++|+++++| ++||.|.|+++++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~~--~~~~~~---~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~ 76 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVLA--VYEYPT---FATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTL 76 (507)
T ss_pred CCcEeeHHHHHHHHHHHHHH--HHhhHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhcc
Confidence 35779999999999988764 344332 345689988888998775 6889999999999998 8999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
||++||.++|.+|+....+...........+...+. .+.. ........+..++++++++.+|++|.|.+.
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~----~~~~------~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~ 146 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK----FPAL------NEDPIIKFIAALIIFWALAFSQFGGTKRTA 146 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cchh------ccCcHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999999998876554433222222222221 0110 111122223456677788999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhhhccccCCCCC-CCCCCCCCch-hHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCC
Q 007682 205 IAQAIVTTANVLA-MLFVIIAGSYLGFKTGWSGY-ELPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD 281 (593)
Q Consensus 205 ~i~~~~~~~~li~-~~~~~i~~~~~~~~~~~~~~-~~~~~~~p~g-~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ 281 (593)
+++++.....++. .+++++.+.......+.... .+.+++.|.. ..+.+..+...+|+|.|+|.+++++||+|||+|+
T Consensus 147 ~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~ 226 (507)
T TIGR00910 147 KIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRD 226 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCccc
Confidence 9998866544443 33333333222111111110 1112333431 1123444455689999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHH----HHcc--hhHHHHHHHHHHHHHHHHHHhhhhcchh
Q 007682 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAF----ASHG--MHWASYVITIGAVTALCSTLMGSILPQP 355 (593)
Q Consensus 282 ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~----~~~g--~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (593)
+|||++.+++++.++|.+.++++...+|+++++..++..+.+ ...+ .+|...++.+..+++.++++++++.+.+
T Consensus 227 ~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~s 306 (507)
T TIGR00910 227 YPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPS 306 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888888888876555444443 3333 3677778888999999999999999999
Q ss_pred HHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007682 356 RILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD---------VSALAGMVSVGTLLAFTMVAISVLIL 426 (593)
Q Consensus 356 R~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~---------~~~l~~l~si~~l~~y~l~~~~~l~l 426 (593)
|.++++||||.+|++|+|+||+ ++|+++++++++++.++.++.. +..+.++.++..++.|.+.+++++++
T Consensus 307 R~l~~~ardg~lP~~~~k~nk~-~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~l 385 (507)
T TIGR00910 307 RGMFAAAQKGLLPAAFAKMNKH-EVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVL 385 (507)
T ss_pred HHHHHhcccCCcCHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999966 9999999999999877543311 23456677888999999999999999
Q ss_pred hcCCCC
Q 007682 427 RYVPPD 432 (593)
Q Consensus 427 r~~~~~ 432 (593)
|+|+|+
T Consensus 386 r~k~p~ 391 (507)
T TIGR00910 386 ILKHPD 391 (507)
T ss_pred HHhcCC
Confidence 998876
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=1.3e-41 Score=388.29 Aligned_cols=377 Identities=17% Similarity=0.243 Sum_probs=304.3
Q ss_pred cccccChHHHHHHH-hhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhh-ccCCCccccchHHH
Q 007682 47 LAKNLTIPHLVAIG-VGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASR-CPSAGSAYHYSYIC 123 (593)
Q Consensus 47 l~r~l~~~~~~~l~-i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~-~p~~GG~y~~~~~~ 123 (593)
-.+++++++.+++. +++++|+|+|...+.++. .+|.. .++.|+++++++++.++||+|+++. +|++||.|.|++++
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg-~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisra 152 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVG-QAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRS 152 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 45789999999997 999999999999999774 55665 7888999999999999999999998 99999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~ 203 (593)
+|+.+|+.+||.+++++.+..+.++.++++++..++..... ... ..+ .....+++++++++++++|+.|+|..
T Consensus 153 lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~--~~~---~~~--~~~~~iia~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 153 LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS--KIM---VDP--INDIRIYGTVTVVVLLGISFAGMEWE 225 (953)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--ccc---cCc--cccchHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999887742110 000 001 11134578899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccc---CCCC-----CC-CCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007682 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKT---GWSG-----YE-LPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~~i~~~~~~~~~---~~~~-----~~-~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E 274 (593)
.+++.+++.++++.++.+++.++...... ++.. +. +..+..+.+..+++..++..|++|+|+|..+++++|
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888777766554321111 0000 00 001111223334777777888999999999999999
Q ss_pred hhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CCh------------------HH----HHHHHc-chhH
Q 007682 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-DTP------------------IS----SAFASH-GMHW 330 (593)
Q Consensus 275 ~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~-~~~------------------~~----~~~~~~-g~~~ 330 (593)
+|||+|++|||++.++++++++|++.++++....+.+.... +.. .. +.+... ...+
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~ 385 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSP 385 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhh
Confidence 99999999999999999999999999988777776443211 000 00 111111 1122
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCc--ccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHH
Q 007682 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMV 408 (593)
Q Consensus 331 ~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP--~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~ 408 (593)
..+++.++++++.+++.++++.+.||++++|||||.+| ++|+|+|+|+++|++|++++++++.++.++++++.+..+.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li 465 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII 465 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45789999999999999999999999999999999999 8999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 007682 409 SVGTLLAFTMVAISVLILRYVPP 431 (593)
Q Consensus 409 si~~l~~y~l~~~~~l~lr~~~~ 431 (593)
+..++++|.+++++++++|++++
T Consensus 466 s~~fLl~Y~lvnla~~~l~~~~~ 488 (953)
T TIGR00930 466 SNFFLASYALINFSCFHASLLRS 488 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999986653
No 32
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-42 Score=357.58 Aligned_cols=382 Identities=19% Similarity=0.275 Sum_probs=304.0
Q ss_pred CCCcccccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcc
Q 007682 38 TKPERSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSA 116 (593)
Q Consensus 38 ~~~~~~~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~-~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~ 116 (593)
..+++++||++|++++|+...++++.+=-.--...+.......+|| .++|+|++++++.++.+++++|+++.+|++||.
T Consensus 37 L~~lgYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgL 116 (550)
T KOG1289|consen 37 LAELGYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGL 116 (550)
T ss_pred HHHcCCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcH
Confidence 3456789999999999999999987652111122222223343455 599999999999999999999999999999999
Q ss_pred ccchHHHhCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHH
Q 007682 117 YHYSYICVGEG----VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIV 192 (593)
Q Consensus 117 y~~~~~~lG~~----~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 192 (593)
|.|+...-+|+ .+|++||...+++..+.++...+.++.+.....-.+ |++. .....+..+..++.++.
T Consensus 117 y~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n--p~y~------~~~~~~~~v~~ai~~v~ 188 (550)
T KOG1289|consen 117 YFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN--PNYE------PTNYHQFGVFEAILFVH 188 (550)
T ss_pred HHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC--CCCc------ccceEeehHHHHHHHHH
Confidence 99999986655 678888888999999999998888887776654222 2221 12233445678888899
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------CCCCCCCCCCCCCchhHHHHHHHHHHHHHhhh
Q 007682 193 TGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT--------GWSGYELPTGYFPFGVNGMLAGSATVFFAFIG 264 (593)
Q Consensus 193 ~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G 264 (593)
.++|+...|..++++.+....+++.+++..+.......++ -|..+++.+++.+.||+ +..++....|+++|
T Consensus 189 ~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil~f~~~~wt~sG 267 (550)
T KOG1289|consen 189 GLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FILGFFNPAWTMSG 267 (550)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHHhhccceeEEec
Confidence 9999999999999999999999998887777666533222 14455666788888887 78888889999999
Q ss_pred hhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCC-CC--CC--CChHHHHHHHcchhHHHHHHHHHH
Q 007682 265 FDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYY-EM--DP--DTPISSAFASHGMHWASYVITIGA 339 (593)
Q Consensus 265 ~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~-~l--~~--~~~~~~~~~~~g~~~~~~iv~i~~ 339 (593)
+|+.+|++||+|||+|+.||||+.++.+..++-.+..+.+....+.+ +. +. ..|+.+.+.+..++-....+....
T Consensus 268 yDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ 347 (550)
T KOG1289|consen 268 YDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLI 347 (550)
T ss_pred cCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHH
Confidence 99999999999999999999999999999999888888888888742 21 22 478999888876654447777778
Q ss_pred HHHHHHHHhhhhcchhHHHHHHHhcCCCc--ccccccccccccchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHH
Q 007682 340 VTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGT 412 (593)
Q Consensus 340 ~~~~~~s~~~~~~~~sR~l~ama~dg~lP--~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~-----~~~~l~~l~si~~ 412 (593)
+++.+-+..+.+.+.||..|+.+|||.+| ++++|+||++++|.+|+++..+++.++.++. .++++.+...+..
T Consensus 348 ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l 427 (550)
T KOG1289|consen 348 IIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIAL 427 (550)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999 9999999999999999999999999887764 2556777777778
Q ss_pred HHHHHHHHHHHHHHhc
Q 007682 413 LLAFTMVAISVLILRY 428 (593)
Q Consensus 413 l~~y~l~~~~~l~lr~ 428 (593)
.++|.....+.+.++|
T Consensus 428 ~~Ay~iP~~~rlf~~r 443 (550)
T KOG1289|consen 428 FIAYAIPIFCRLFFGR 443 (550)
T ss_pred HHHHHHhHHhheeecc
Confidence 8888877655555443
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=6.5e-42 Score=367.55 Aligned_cols=366 Identities=32% Similarity=0.526 Sum_probs=306.9
Q ss_pred cChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCccccchHHHhCchHH
Q 007682 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (593)
Q Consensus 51 l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~-l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g 129 (593)
+++||+.+++++.++|+|++..+ ....+|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~---~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP---AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH---HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58999999999999999998876 34568999999999988877 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007682 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (593)
Q Consensus 130 ~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~ 209 (593)
++++|.+++.|....+.......+++...++. + ....+.....++++++++++.+|++|.|.+++++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~ 146 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGP-----D------LNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNI 146 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----G------GTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhcccc-----c------cccccchheeeeecccccceEeeechhhhhhhhhhh
Confidence 99999999999999888887777777655431 0 011122234568888999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHhhhccccCCCCC-CCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHH
Q 007682 210 VTTANV-LAMLFVIIAGSYLGFKTGWSGY-ELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (593)
Q Consensus 210 ~~~~~l-i~~~~~~i~~~~~~~~~~~~~~-~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~ 287 (593)
.+.+++ ..++++++.++.....+..+.. ...+...|.++.+++.++...+|+|.|+|.+++++||+|| ||+||+++
T Consensus 147 ~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~ 224 (426)
T PF13520_consen 147 LTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAII 224 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHH
T ss_pred hhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecc
Confidence 999999 5767777777665433322110 0112345556667888999999999999999999999776 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCC----hHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHh
Q 007682 288 TALSICCALYMLVSIVIVGLVPYYEMDPDT----PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (593)
Q Consensus 288 ~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~----~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~ 363 (593)
.+.+++.++|.+.+++.....|+++.+..+ +....++..++++..+++.+...++.+++.++.+.+.+|.+++|+|
T Consensus 225 ~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 225 ISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccc
Confidence 999999999999999999999988765432 4667777888889999999999999999999999999999999999
Q ss_pred cCCCcccccccccccccchHHHHHHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 007682 364 DGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM------DVSALAGMVSVGTLLAFTMVAISVLILRYVPPDE 433 (593)
Q Consensus 364 dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~------~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~~ 433 (593)
||.+|++++|+| |+++|++++++..+++.++.++. +++.+.++.++...+.|.+...+.+++|+|+|++
T Consensus 305 d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PF13520_consen 305 DGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDL 379 (426)
T ss_dssp TTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSS
T ss_pred ccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 999999999999 66999999999999997665332 4678999999999999999999999999988764
No 34
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=2.4e-40 Score=360.86 Aligned_cols=372 Identities=17% Similarity=0.200 Sum_probs=268.6
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHH-HHHHHHHHHHHhhhccC-CCccccchHHHh
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIA-SAFSAFCYAELASRCPS-AGSAYHYSYICV 124 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~-~l~~al~~ael~s~~p~-~GG~y~~~~~~l 124 (593)
++|++++++++++++++++|.+.. + . +...+|++.+++++++++. .++.+++++|+++++|+ +||.|.|+++++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~--~-~-~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS--P-R-AFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch--H-H-HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 468899999999999999997632 2 1 2346799888888877765 67899999999999997 899999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCChhhhhhhccCCCC--ccchhHHHHHHHHHHHHHHHHhhH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAML-FGSADSLPFFMARQQIPGL--GIIVDPCAAILVLIVTGLLCVGIK 201 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~~~l~~~G~k 201 (593)
||++||+++|.+|.+++................. ++.+. .+.+ +.... ......++++++++++.+|.+|+|
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~ 155 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDT-TQTW----HFLGLNSTQVVGILAVIWMILVTFVASKGIN 155 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-hhhh----hhhcccchHHHHHHHHHHHHHHHHHHccchH
Confidence 9999999999999888876654433222212222 22111 0100 00111 112224566666688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-h-hhccccCC-CCCC--C-CCCCCCc--hhHHHHHHHHHHHHHhhhhhhHhhhhh
Q 007682 202 ESTIAQAIVTTANVLAMLFVIIAG-S-YLGFKTGW-SGYE--L-PTGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAE 273 (593)
Q Consensus 202 ~~~~i~~~~~~~~li~~~~~~i~~-~-~~~~~~~~-~~~~--~-~~~~~p~--g~~~~~~~~~~~~~a~~G~e~~a~~~~ 273 (593)
.+++++++.+.+++...+++++.+ . ......+. .... + .+...|. +..+++.++..++|+|.|+|.+++++|
T Consensus 156 ~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~ 235 (496)
T PRK15238 156 KIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVD 235 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999988777665432222111 1 11111100 0000 0 0000111 113577777889999999999999999
Q ss_pred hhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC-------ChHHHHHHHc-----------------chh
Q 007682 274 EVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD-------TPISSAFASH-----------------GMH 329 (593)
Q Consensus 274 E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~-------~~~~~~~~~~-----------------g~~ 329 (593)
|+|||+|++|||++.+...+.++|++..+.+....|+++.... .+.. +.+.. .+.
T Consensus 236 E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~ 314 (496)
T PRK15238 236 KTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGV 314 (496)
T ss_pred hccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhH
Confidence 9999999999999999999999999998888888877665321 1111 11211 135
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh--C-------
Q 007682 330 WASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM--D------- 400 (593)
Q Consensus 330 ~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~--~------- 400 (593)
|...++.+..+.+.+++.+++.++.+|.++++++||.+||+|+|+||+ ++|++|++++++++.++.+.. .
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~nk~-g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~ 393 (496)
T PRK15238 315 WFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLNKN-GMPANAMWLQCIIVSVFILLVSFGGDAASAF 393 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 566677888999999999999999999999999999999999999965 999999999988877654332 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 007682 401 VSALAGMVSVGTLLAFTMVAISVLILRYV 429 (593)
Q Consensus 401 ~~~l~~l~si~~l~~y~l~~~~~l~lr~~ 429 (593)
++.+.++.+...++.|.+.+.+++++|++
T Consensus 394 f~~l~~l~~~~~li~y~~~~~a~i~~r~~ 422 (496)
T PRK15238 394 FNILTLMANVSMTLPYLFLAGAFPFFKKK 422 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46799999999999999999999999764
No 35
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-40 Score=358.34 Aligned_cols=376 Identities=38% Similarity=0.584 Sum_probs=317.7
Q ss_pred cccccccChHH-HHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 45 QKLAKNLTIPH-LVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 45 ~~l~r~l~~~~-~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
++++|+++.++ ...++++.++|.|++...+..+... +...++|++++++..+.+++++|+++++|++||.|.|+++.
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~--~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~ 85 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA--PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRA 85 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhh
Confidence 44789999999 9999999999999999998765433 55555599999988888999999999999999999999999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~ 203 (593)
+|+++|++++|.+++++....+..+.....++...++.... . ..+ ......++.+++++.+.+|.+|+|.+
T Consensus 86 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~--~~~~~~~~~~~~~~~~~ln~~G~~~~ 156 (466)
T COG0531 86 LGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGL----L---SIG--PLLIILIALALIALLTLLNLRGIKAS 156 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh----h---cCC--chHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999998888877777653210 0 000 02344578999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChh
Q 007682 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip 283 (593)
.+++.+.+.++++.++++.+.++.....++.+....... .......+..++...+|+|.|+|.+++++||+|||+|++|
T Consensus 157 ~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip 235 (466)
T COG0531 157 AKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP-GGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc-ccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCcccccc
Confidence 999999999999999998888776554443221111111 1122346888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC---ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007682 284 LGIGTALSICCALYMLVSIVIVGLVPYYEMDPD---TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (593)
Q Consensus 284 ~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~---~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (593)
|+++.+.+.+.++|++.+.+.....|.+++... .|..+++....+.+...++.+..+.+.+++.+++..+.+|.+++
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~ 315 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYA 315 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987655433 68888888888789999999999999999999999999999999
Q ss_pred HHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 007682 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-----DVSALAGMVSVGTLLAFTMVAISVLILRYVPPD 432 (593)
Q Consensus 361 ma~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~-----~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~~ 432 (593)
|+|||.+|++++|+|+|+++|.++++++++++.++.... .++.+.++.+...++.|.+...+.+++|+++++
T Consensus 316 ~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 392 (466)
T COG0531 316 MARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPD 392 (466)
T ss_pred HHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999998899999999999999333332 257899999999999999999999999988654
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=5.9e-41 Score=364.75 Aligned_cols=363 Identities=29% Similarity=0.465 Sum_probs=296.8
Q ss_pred HHHHhhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHHHHHH
Q 007682 57 VAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWA 135 (593)
Q Consensus 57 ~~l~i~~~iG~G~~~~~~~v~~~~~G~-~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~gw~ 135 (593)
.++++++++|.|.|...+... ..+|+ +.++++++++++.++.+.+++|+++++|++||.|.|++|.+||.+|+.+||.
T Consensus 3 ~~~~ig~~ig~g~f~~~g~~~-~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~ 81 (478)
T PF00324_consen 3 FMISIGGIIGTGLFLGSGFAI-AAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWA 81 (478)
T ss_pred EEeeHHHHHHHHHHHHHHHHH-HhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHH
Confidence 456889999999999999855 56677 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChh-hhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007682 136 LILEYTIGGSAVARGISPNLAMLFGSADSLP-FFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTAN 214 (593)
Q Consensus 136 ~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~ 214 (593)
||+.|+...+......+..+..+-. ..+.+ .+. ..+.++.++.++++.+|++|+|...+++.++..++
T Consensus 82 y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~ 150 (478)
T PF00324_consen 82 YWLSYIAAIAAEATAAGSFLQFWGY-FPGLPSTWV----------WGILIAIIFILLITLLNLFGVRVSGKIEFILTIIK 150 (478)
T ss_pred HHHHHHHHHHhhhhhhhhhhccccc-ccccccccc----------ccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHh
Confidence 9999999888877666655543310 01111 000 00034777888899999999999999999999999
Q ss_pred HHHHHHHHHHH-hhhccccCCCCC---CCC---CCCCCch--------hHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCC
Q 007682 215 VLAMLFVIIAG-SYLGFKTGWSGY---ELP---TGYFPFG--------VNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (593)
Q Consensus 215 li~~~~~~i~~-~~~~~~~~~~~~---~~~---~~~~p~g--------~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~ 279 (593)
++.++.+++.+ .......+..+. ..+ ....|.+ +.+++.++..++++|.|+|.++.++||+|||+
T Consensus 151 ~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 151 LIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 99988887777 322111111111 001 1123333 78899999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC------ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007682 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD------TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (593)
Q Consensus 280 r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~------~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~ 353 (593)
|++|||+..+.+.+.++|++.++++...+|+++.... +|+..+.+..+++++..++.++.+++.+++.++.+++
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~ 310 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYA 310 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcc
Confidence 9999999999999999999999999999998885322 3788899999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhC------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007682 354 QPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD------VSALAGMVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 354 ~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~------~~~l~~l~si~~l~~y~l~~~~~l~lr 427 (593)
.+|++++|+|||.+|+++.+.++|+++|++|++++.+++.+..+... ++.+.++.++..++.|.+..++.+++|
T Consensus 311 ~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r 390 (478)
T PF00324_consen 311 ASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFR 390 (478)
T ss_pred cceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhh
Confidence 99999999999999955555555669999999999999887665432 345778888889999999999999888
Q ss_pred cCCC
Q 007682 428 YVPP 431 (593)
Q Consensus 428 ~~~~ 431 (593)
++.+
T Consensus 391 ~~~~ 394 (478)
T PF00324_consen 391 KKFK 394 (478)
T ss_pred hhhc
Confidence 7644
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.96 E-value=2.4e-27 Score=250.68 Aligned_cols=343 Identities=17% Similarity=0.108 Sum_probs=268.2
Q ss_pred HHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHHHHHHH
Q 007682 57 VAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWAL 136 (593)
Q Consensus 57 ~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~gw~~ 136 (593)
+++.+|+++|+|++.+++..+ ..+++..+...+++++.+...+++++|+++++|++||.|.|+++.+||..|++.+|.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 345678999999999999865 4455566667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 007682 137 ILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVL 216 (593)
Q Consensus 137 ~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li 216 (593)
++.+....+++....++++...+..+.. .. ......++++.+++..++.+|.|...+++.+++..+++
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~----------~~--~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFG----------FP--WSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcC----------CC--ccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 9988888888888878888777642110 00 01123466677788899999999999999999999998
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhh-hHhhhhhhhhCCCCChhHHHHHHHHHHHH
Q 007682 217 AMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFD-AVASTAEEVKNPQRDLPLGIGTALSICCA 295 (593)
Q Consensus 217 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e-~~a~~~~E~k~P~r~ip~ai~~~~~i~~~ 295 (593)
.++++++.+..+.+.+++.+. +..+.++.++..++...+++| |+| .++...+|+++++|++||+++.+..++.+
T Consensus 150 ~l~~~ii~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~ 224 (381)
T TIGR00837 150 AFALVFSGLLPHVKGDLLLDV----ALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALV 224 (381)
T ss_pred HHHHHHHHHHhhccHHHHhcC----ccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 888777776654333332211 111235667778888888888 665 68888999987799999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCC-------CCChHHHHHHH-cchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCC
Q 007682 296 LYMLVSIVIVGLVPYYEMD-------PDTPISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLL 367 (593)
Q Consensus 296 ~y~~~~~~l~~~~p~~~l~-------~~~~~~~~~~~-~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~l 367 (593)
+|++...+....+|++++. +.+++.++.+. .+.+|...++.++.++++.++.++...+..+.+.
T Consensus 225 lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~-------- 296 (381)
T TIGR00837 225 LYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLA-------- 296 (381)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 9999999999999988763 12455666666 4677888999999999999999998877775443
Q ss_pred cccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007682 368 PPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 368 P~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr 427 (593)
+.+++.+++ +-|..+.+++.+..++++.+.....+.++...+....++......+..+
T Consensus 297 -~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~ 354 (381)
T TIGR00837 297 -DLFKFDDSK-KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAW 354 (381)
T ss_pred -HHhCCCccc-CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 3377888888888888887777778888999998888888877777773
No 38
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.91 E-value=2.9e-22 Score=208.86 Aligned_cols=380 Identities=18% Similarity=0.213 Sum_probs=283.8
Q ss_pred ccc-ccChHHHHHHHhh-hhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCccccchHH
Q 007682 47 LAK-NLTIPHLVAIGVG-STIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP-SAGSAYHYSYI 122 (593)
Q Consensus 47 l~r-~l~~~~~~~l~i~-~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p-~~GG~y~~~~~ 122 (593)
.+| +|++++.++.-.+ ++...=+|...|.+. .++|.- .+.-.+++-.+.++..++...+++.=- +.||.|..++|
T Consensus 62 s~r~kLgTf~GvfvPtaLsmfSiLlFLR~gfIv-G~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISR 140 (945)
T KOG1288|consen 62 SNRAKLGTFEGVFVPTALSMFSILLFLRFGFIV-GQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISR 140 (945)
T ss_pred CCcccccceeeEechhHHHHHHHHHHHHHhhhh-cchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEc
Confidence 345 8888887655222 233444788888765 455664 666666677777778888877777665 57999999999
Q ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 007682 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (593)
Q Consensus 123 ~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~ 202 (593)
.+||..|.-+|..++++.++..+..+.++.+-+-..++.....+ .....+|.-.++-.+.+..+..++..+++.|...
T Consensus 141 sLGpEfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~--sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsal 218 (945)
T KOG1288|consen 141 SLGPEFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGA--SGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSAL 218 (945)
T ss_pred ccCcccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCC--cccccCCCCcchhhHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999888887433211 1112334444444456888888899999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC---------------CCC---------C-----CCCCCCchhHHHHH
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWS---------------GYE---------L-----PTGYFPFGVNGMLA 253 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~---------------~~~---------~-----~~~~~p~g~~~~~~ 253 (593)
.++..++......+.+.-+.+..+..+..+... +++ + ..+....+-..+-.
T Consensus 219 fAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~ 298 (945)
T KOG1288|consen 219 FAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFAS 298 (945)
T ss_pred HHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhh
Confidence 888777666555555444444333322111100 000 0 01111112233555
Q ss_pred HHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHc-chhHHH
Q 007682 254 GSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWAS 332 (593)
Q Consensus 254 ~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~-g~~~~~ 332 (593)
.+++.|-+.+|.-+.|++++|.|+|+|+|||+.+.+.+.+.++|+++.+.+....|+..+.++-.+. +.. ..+
T Consensus 299 ~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~---~~isl~p--- 372 (945)
T KOG1288|consen 299 TFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVM---MHISLHP--- 372 (945)
T ss_pred hheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhhe---eeccccc---
Confidence 5667788889999999999999999999999999999999999999999999999888776543322 222 123
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCc--ccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q 007682 333 YVITIGAVTALCSTLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSV 410 (593)
Q Consensus 333 ~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP--~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si 410 (593)
+++.++++.+.+.+..+.+.+++|++.++|||.++| -.++|...+.+.|+.|+.++.+++-+..+.++++.+..++++
T Consensus 373 ~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~ 452 (945)
T KOG1288|consen 373 PFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITM 452 (945)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 467788888888888899999999999999999999 677888888899999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCC-CCCCC
Q 007682 411 GTLLAFTMVAISVLILRYVP-PDEVP 435 (593)
Q Consensus 411 ~~l~~y~l~~~~~l~lr~~~-~~~~~ 435 (593)
.++++|..++++++.++... |+.||
T Consensus 453 ~FLlty~~vNLacl~LeissAPNFRP 478 (945)
T KOG1288|consen 453 TFLLTYGAVNLACLLLEISSAPNFRP 478 (945)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCc
Confidence 99999999999999998754 44333
No 39
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.90 E-value=4.2e-22 Score=209.11 Aligned_cols=382 Identities=16% Similarity=0.249 Sum_probs=280.0
Q ss_pred cccChHHHHHH-HhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCccccchHHHhC
Q 007682 49 KNLTIPHLVAI-GVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP-SAGSAYHYSYICVG 125 (593)
Q Consensus 49 r~l~~~~~~~l-~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p-~~GG~y~~~~~~lG 125 (593)
-+++++..+.+ ++-.+.|+-.|....++. ..+|.. .++...+++++.++++.+++.+++.=- .+||.|..++|.+|
T Consensus 112 ~~mGt~mGVyLPclQnIlGVilFiRLtWvV-G~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLG 190 (1075)
T KOG2082|consen 112 ARMGTLMGVYLPCLQNILGVILFIRLTWVV-GMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLG 190 (1075)
T ss_pred cccceeeeeeHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccC
Confidence 34665555554 677788888899888865 556665 667677788899999999999998664 47999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAM-LFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
|..|-.+|.++.++..+..+.+..+..+.+-. +++...-+...........+.+-..+.+.+++++.+++...|+|...
T Consensus 191 PEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vn 270 (1075)
T KOG2082|consen 191 PEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVN 270 (1075)
T ss_pred ccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888876544 33221111100000011112222345688899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc------------------------------cC---------------------
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYLGFK------------------------------TG--------------------- 233 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~~~~------------------------------~~--------------------- 233 (593)
++..++..+.++.++.+.+.++-..+. .+
T Consensus 271 k~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~ 350 (1075)
T KOG2082|consen 271 KFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDE 350 (1075)
T ss_pred HhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCccccc
Confidence 999888888887776666555432110 00
Q ss_pred -------------------------CCCCC-----CCCCC----------CC----chhHHHHHHHHHHHHHhhhhhhHh
Q 007682 234 -------------------------WSGYE-----LPTGY----------FP----FGVNGMLAGSATVFFAFIGFDAVA 269 (593)
Q Consensus 234 -------------------------~~~~~-----~~~~~----------~p----~g~~~~~~~~~~~~~a~~G~e~~a 269 (593)
|+.+- .+.+. .| .--.+|...+.+.|-+.+|+-+.+
T Consensus 351 y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGS 430 (1075)
T KOG2082|consen 351 YFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGS 430 (1075)
T ss_pred ccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecC
Confidence 00000 00000 01 011245556667788999999999
Q ss_pred hhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHH-----cchhHHHHHHHHHHHHHHH
Q 007682 270 STAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFAS-----HGMHWASYVITIGAVTALC 344 (593)
Q Consensus 270 ~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~-----~g~~~~~~iv~i~~~~~~~ 344 (593)
+.+++.|||+|+||.+.+.+.+.+..+|....+.....+....+... +.+.... ....+..|++.++.+++.+
T Consensus 431 NrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlST~ 508 (1075)
T KOG2082|consen 431 NRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLSTC 508 (1075)
T ss_pred CCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHHHh
Confidence 99999999999999999999999999998877777666642222111 0011110 0111244788999999999
Q ss_pred HHHhhhhcchhHHHHHHHhcCCCc--ccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHH
Q 007682 345 STLMGSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAIS 422 (593)
Q Consensus 345 ~s~~~~~~~~sR~l~ama~dg~lP--~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~ 422 (593)
++.+.++.++||.|.+.|+|+++| +.|++..++ +-|..|++++.+++-.-+++++++.+..+.++.+++.|.+++++
T Consensus 509 GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~n-gEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLa 587 (1075)
T KOG2082|consen 509 GAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKAN-GEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLA 587 (1075)
T ss_pred HHHHhhhcCcHHHHHHHhhcCccchhhhhccccCC-CCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999 999998877 99999999999999999999999999999999999999999998
Q ss_pred HHHHhc-CCCCCC
Q 007682 423 VLILRY-VPPDEV 434 (593)
Q Consensus 423 ~l~lr~-~~~~~~ 434 (593)
+.+.-. |.|+.|
T Consensus 588 CavqtLLrtPnWR 600 (1075)
T KOG2082|consen 588 CAVQTLLRTPNWR 600 (1075)
T ss_pred HHHHHHhcCCCCC
Confidence 877543 345433
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.89 E-value=5.3e-20 Score=193.05 Aligned_cols=287 Identities=14% Similarity=0.144 Sum_probs=223.4
Q ss_pred ccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHH
Q 007682 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (593)
Q Consensus 50 ~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g 129 (593)
++|.+|.+++.+++++|+|++..++..+ +.+|++++++++++++.+++.+++++|+++++|+. |.+.|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 6899999999999999999999999865 56888899999999999999999999999999986 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007682 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (593)
Q Consensus 130 ~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~ 209 (593)
++.+|.+++......+...+..++.+....... .| ...+++.+++++...+..|+|...|++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--tp--------------~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i 143 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPR--TP--------------IIVIIILIIIVSIYIVRKGIEVLLRTAEI 143 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC--------------HHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999998777776677777777665443211 11 12356777778888899999999999999
Q ss_pred HHHHHHHHH-HHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHH-HHHHHhhhhhhHhhhhhhhhCCCCChhHHHH
Q 007682 210 VTTANVLAM-LFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSA-TVFFAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (593)
Q Consensus 210 ~~~~~li~~-~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~-~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~ 287 (593)
+..+.++.. +++...... ..++. +-.+..+.|+.+++.+.. ...++|.|+|......+|+|||| +.||++.
T Consensus 144 ~~~~~i~~~~~il~~~~~~---~~~~~---~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~-~~~k~~~ 216 (359)
T TIGR00912 144 LLIIFLILFILVLILLAPK---LGNIK---NLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKK-KIKKSII 216 (359)
T ss_pred HHHHHHHHHHHHHHHHhcc---cccHH---HccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChh-hhHHHHH
Confidence 988877763 333322221 11111 112344567777788776 78899999999999999999965 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchh----HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007682 288 TALSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMH----WASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (593)
Q Consensus 288 ~~~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~----~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~am 361 (593)
.+.++++++|+....+..+..++++.. ...|..+..+....+ -...++....+.+.+......++...+.+...
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~ 295 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKL 295 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887764 356888887776433 23345556666777777777777777776543
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.87 E-value=7.8e-20 Score=175.90 Aligned_cols=279 Identities=18% Similarity=0.183 Sum_probs=180.9
Q ss_pred ccccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchH
Q 007682 42 RSHQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSY 121 (593)
Q Consensus 42 ~~~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~ 121 (593)
+|+++|.|+.+.+|..+.+++.+-+......+...+....|...+++|+++++++++.++||+|+++++|++||.|.|.+
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYIS 84 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIR 84 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhH
Confidence 35667999999999999998876433222212222333467789999999999999999999999999999999999999
Q ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhH-HHHHHHHHHHHHHHHhh
Q 007682 122 ICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDP-CAAILVLIVTGLLCVGI 200 (593)
Q Consensus 122 ~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~l~~~G~ 200 (593)
|++||.+|++.||..|..+..+..+.+.-.. ++ .+.+..... -++ .++..++ .+...|.
T Consensus 85 RAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~~------~~i~~~~~~---------f~~~~s~~~i~---~~i~~~~ 144 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTYVLSQPILGDLVL--LN------FNIQNQFEQ---------FLIVESLFPIV---LLIIANK 144 (399)
T ss_pred HhhCccHHHHHHHHHHHHHHhhcchhhheee--ee------eeeHHHHHH---------HHHHHHHHHHH---HHHHccc
Confidence 9999999999999999998887766643211 00 001111100 001 1222221 2223356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhH-HHHHHHHHHHHHhhhhhhHhhhhhhhhCCC
Q 007682 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVN-GMLAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (593)
Q Consensus 201 k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~-~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~ 279 (593)
|.+++.-.++.....+ +.+.... .+-|.. . +++ ..+ ....+.....-+|.=.|+...+++|.||-+
T Consensus 145 ~~~~~~v~il~~a~~i----~aif~~~--~s~n~~--~--~~f---~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~ 211 (399)
T PHA02764 145 KIYAKIVDILAIAQII----IAIFIAF--KSFNFQ--Y--QNF---TISNTLLSALLFDLSAFIFINAISYIAGEIKNIK 211 (399)
T ss_pred HHHHHHHHHHHHHHHH----HHHHhhc--cceeEE--E--cce---eehHHHHHHHHHHHHHHHHhccHHHHHHHhhcch
Confidence 6666655554433333 1111111 111111 0 111 111 234444455566777899999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 007682 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (593)
Q Consensus 280 r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ 359 (593)
|+...+-..+...+.++-+..+ +.+ + .+..+.+....++-+....--.||.++
T Consensus 212 k~~~~gyf~s~~~~~~~~ii~s--------y~n------~-------------~il~~~~~~w~~~y~~~~~~~~srli~ 264 (399)
T PHA02764 212 KSSMIGYFVSYGIVAILSIIDS--------YSN------L-------------NILFALMPIWFFSYMPIANKIQSRLIQ 264 (399)
T ss_pred hhhhhhhHHHHHHHHHHHHHHh--------hhh------H-------------HHHHHHHHHHHHhheeeecchHHHHHH
Confidence 9888888777777666544444 111 0 112222555666666677777999999
Q ss_pred HHHhcCCCcccccccccccccch
Q 007682 360 AMARDGLLPPFFSDVNKTTQVPV 382 (593)
Q Consensus 360 ama~dg~lP~~~~~~n~~~~~P~ 382 (593)
+|+.|+.+|++|+|.|| ++|.
T Consensus 265 ~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 265 TMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHhhhhchHHHhccCC--Ccee
Confidence 99999999999999997 4887
No 42
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.1e-18 Score=179.32 Aligned_cols=371 Identities=17% Similarity=0.257 Sum_probs=284.4
Q ss_pred cccChHHHHHH-HhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCccccchHHHhC
Q 007682 49 KNLTIPHLVAI-GVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP-SAGSAYHYSYICVG 125 (593)
Q Consensus 49 r~l~~~~~~~l-~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p-~~GG~y~~~~~~lG 125 (593)
-+.+|||.++. ++-.+.|.-+|...+++. .++|.. .++...++...+...+++..-++++-. ++||.|..+++.+|
T Consensus 28 v~fg~~~gv~~~cmlni~gv~lflrl~wiv-gqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~slg 106 (643)
T KOG2083|consen 28 VLFGWWDGVFVRCMLNIFGVILFLRLGWIV-GQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSLG 106 (643)
T ss_pred eEEeeeehhhhhhhHHHHHHHHhhhhhhee-ecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEeccc
Confidence 46899998887 455678888999999976 567775 666677788899999999999999987 68999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
+..|.-.|..|.++..+..+.+..++++.+..++.... ...+|-++.+.++++..++..|+++..+
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s--------------~~~i~gi~~vt~~ill~i~~ag~~w~~k 172 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES--------------KEMIDGIGSVTVLILLAINVAGVEWEAK 172 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--------------HHHhcchhHHHHHHHHHhhhccchhHHH
Confidence 99999999999999999999999999999998885332 1123336888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc--ccCCCCCC---CCCCCCCc--hhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCC
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGF--KTGWSGYE---LPTGYFPF--GVNGMLAGSATVFFAFIGFDAVASTAEEVKNP 278 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~--~~~~~~~~---~~~~~~p~--g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P 278 (593)
.+.++..+.++.+.-..+..+.... ..++..+. -.++..|. .-..+++.++..|-+.+|.-+.++++++.|+|
T Consensus 173 ~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~P 252 (643)
T KOG2083|consen 173 LQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDP 252 (643)
T ss_pred HHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCc
Confidence 9988877777776666555443211 11111111 11222221 11356667778899999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-----CC----hHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHh
Q 007682 279 QRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP-----DT----PISSAFASHG-MHWASYVITIGAVTALCSTLM 348 (593)
Q Consensus 279 ~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~-----~~----~~~~~~~~~g-~~~~~~iv~i~~~~~~~~s~~ 348 (593)
++++|++.+.+...+..+|.....-+....-.+.... +. .+.+-++..- -.-.......+...+..++..
T Consensus 253 q~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsal 332 (643)
T KOG2083|consen 253 QKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSAL 332 (643)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHH
Confidence 9999999999999999999877766555433322211 11 3333333221 111223566777788888889
Q ss_pred hhhcchhHHHHHHHhcCCCc--ccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007682 349 GSILPQPRILMAMARDGLLP--PFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLIL 426 (593)
Q Consensus 349 ~~~~~~sR~l~ama~dg~lP--~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~l 426 (593)
+.+...++++.++.+|+..| .+++|-..+.+.|.++..++...+.....+++.+.+..+.+...+.+|.+...+++.-
T Consensus 333 sslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~a 412 (643)
T KOG2083|consen 333 SSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHA 412 (643)
T ss_pred HHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhh
Confidence 99999999999999999999 6777777777899999999999998888889999999999999999999998888877
Q ss_pred hcCCCCCC
Q 007682 427 RYVPPDEV 434 (593)
Q Consensus 427 r~~~~~~~ 434 (593)
+...++.+
T Consensus 413 Sl~~s~~w 420 (643)
T KOG2083|consen 413 SLAISEGW 420 (643)
T ss_pred hhcccccc
Confidence 66655433
No 43
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.80 E-value=1.2e-16 Score=167.66 Aligned_cols=288 Identities=16% Similarity=0.089 Sum_probs=211.2
Q ss_pred HHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHH----HHHHhhhccC-CCccccchHHHhCchHHHH
Q 007682 57 VAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFC----YAELASRCPS-AGSAYHYSYICVGEGVAWL 131 (593)
Q Consensus 57 ~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~----~ael~s~~p~-~GG~y~~~~~~lG~~~g~~ 131 (593)
+...+|+++|+|++.++.. +|...+++++++++.+.+..+. +.|.....|+ +++.++++++.+|+.+|.+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~i 83 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGIL 83 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHH
Confidence 3445577999999999975 2334466666666666665444 4455444454 6789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007682 132 IGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVT 211 (593)
Q Consensus 132 ~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~ 211 (593)
.++.|++.......+++.+.++.+++.+..... +..+ ...+.++++++++..++..|.|...|++.++.
T Consensus 84 i~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~----------~~~p-~~~i~~lilv~il~~iv~~G~~~i~r~~~il~ 152 (397)
T TIGR00814 84 ITLLYFFAIYPILLIYSVAITNDSASFLVNQLG----------TAPP-LRGLLSLALILILVAIMSFGEKLLFKIMGPLV 152 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCCc-HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 999999999999888888888888777632110 0000 11135667777778999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhh----hhhhCC---CCChhH
Q 007682 212 TANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTA----EEVKNP---QRDLPL 284 (593)
Q Consensus 212 ~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~----~E~k~P---~r~ip~ 284 (593)
..+++.++++.+....+.+.++..... ....++..+..++...+|+|.|+|.+++++ +|.+|| +|...|
T Consensus 153 ~~~ii~l~~l~~~lip~~~~~~L~~~p----~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k 228 (397)
T TIGR00814 153 FPLVLILVLLSLYLIPHWNGANLTTFP----SFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLR 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHhcCC----cccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHH
Confidence 999888887777666543333322111 111245678899999999999999999999 666655 466789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCC----CC-ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Q 007682 285 GIGTALSICCALYMLVSIVIVGLVPYYEMD----PD-TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILM 359 (593)
Q Consensus 285 ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~----~~-~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ 359 (593)
++..+..+..++|++..+++.+..+.++.. ++ +.+....+....++..++..+...++..+|..+...+....+.
T Consensus 229 ~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~ 308 (397)
T TIGR00814 229 IMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLN 308 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999998877642 22 2233334455678888888888889999999888888888777
Q ss_pred HHHhc
Q 007682 360 AMARD 364 (593)
Q Consensus 360 ama~d 364 (593)
.+.++
T Consensus 309 ~l~~~ 313 (397)
T TIGR00814 309 GIVLN 313 (397)
T ss_pred HHHHH
Confidence 77643
No 44
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.79 E-value=6.2e-16 Score=160.17 Aligned_cols=338 Identities=14% Similarity=0.117 Sum_probs=244.4
Q ss_pred hhhhhhhhHHHhHHHHHHhccCh-H-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHHHHHHHHH
Q 007682 61 VGSTIGAGVYILVGTVAREHSGP-A-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALIL 138 (593)
Q Consensus 61 i~~~iG~G~~~~~~~v~~~~~G~-~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~gw~~~~ 138 (593)
++.-.|+|.+..++.+..+.+.. . +.++|+++++...+.+++ ..|++||.|.+..+..||+.|++.+|+.++
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~l 78 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILYL 78 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHHH
Confidence 45568999999999987655444 2 677899999988888887 889999999999999999999999998876
Q ss_pred HHHHHHHHHHHHHH--HH--HHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 007682 139 EYTIGGSAVARGIS--PN--LAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTAN 214 (593)
Q Consensus 139 ~~~~~~a~~~~~~~--~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~ 214 (593)
..-...+ ..|..+ -. +...++.. .......+.++++..++..+++++.|...+++++++.++
T Consensus 79 ~iGP~~a-iPRtaa~s~e~~i~p~~~~~-------------~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 79 TIGPLFA-IPRTATVSFEMGIAPLLHSP-------------TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHhchh-hhHHHHHHHHHHHHhccCcc-------------cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHH
Confidence 5444331 111111 11 22222100 001112235677777778899999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhh-------hhhhHhhhhh-hhhCCCCChhHHH
Q 007682 215 VLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFI-------GFDAVASTAE-EVKNPQRDLPLGI 286 (593)
Q Consensus 215 li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~-------G~e~~a~~~~-E~k~P~r~ip~ai 286 (593)
++.++.+++.++.+...+ .. ...+++. .+ ..+..++....+++. |+-.+.+..+ |.|||+|+.|+++
T Consensus 145 Li~l~~lii~g~~~p~g~-~~--~~~~~~~-~~-~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i 219 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGP-IL--AASGAYA-SQ-QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTI 219 (378)
T ss_pred HHHHHHHHHHHHHcCCCC-cC--Ccccccc-cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999998753211 11 1111111 10 346677777788888 8888888888 9999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHHhhccCCCCC----CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007682 287 GTAL-SICCALYMLVSIVIVGLVPYYEMD----PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (593)
Q Consensus 287 ~~~~-~i~~~~y~~~~~~l~~~~p~~~l~----~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~am 361 (593)
..++ ..+...|+....+.....+.+..+ ..+.+.++.++..|+++..++.+...++++++.++...+.++.
T Consensus 220 ~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~---- 295 (378)
T TIGR00796 220 KAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEY---- 295 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 9988 677777887787777776655332 2345667777788899999999999999999999988776655
Q ss_pred HhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCC-CCCCCC
Q 007682 362 ARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLI--LRYVPPD-EVPVPS 438 (593)
Q Consensus 362 a~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~--lr~~~~~-~~~~~~ 438 (593)
|+|.++| +|+++.++...+...+.....++++.++..-...+.|-......+. +|++.|+ ++++|.
T Consensus 296 ---------f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~ 364 (378)
T TIGR00796 296 ---------FHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQI 364 (378)
T ss_pred ---------HHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeh
Confidence 4455544 9999999998888888878899999998776666666665555555 6666655 344443
No 45
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.78 E-value=1.7e-15 Score=159.34 Aligned_cols=323 Identities=19% Similarity=0.196 Sum_probs=244.1
Q ss_pred ccChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchH
Q 007682 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGV 128 (593)
Q Consensus 50 ~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~-~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~ 128 (593)
+-+.+..+++.+|+.+|+|+..+|-.. ..+|- ...+..++++.+....++.++|...+.|+..+.-..+++.+|+.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~--~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g 79 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIAT--AGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKG 79 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHH--HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHH
Confidence 457789999999999999999998763 33454 477777888999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007682 129 AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQA 208 (593)
Q Consensus 129 g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~ 208 (593)
+++.+..|.+-......++..+.++.+++.++..... +...+...+.+.+++..+.+.|.|...++++
T Consensus 80 ~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~------------~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~ 147 (394)
T PF03222_consen 80 GIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT------------DLSPWLSSLLFTIIFGGIVYFGTKAVDRINR 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999988888888889888999888887543210 1111233566667777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHH
Q 007682 209 IVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGT 288 (593)
Q Consensus 209 ~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~ 288 (593)
.+...+++.++.+.+.++.+...++... ....+..+...+..+..++++|.-...+..+.+..++-+|+++|+++.
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~~~~~~L~~----~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~ 223 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPHWNPSNLLD----APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIII 223 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHhhc----cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHH
Confidence 9999999998888877765433332211 111234567788899999999999999999999998767889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC----CCC---ChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007682 289 ALSICCALYMLVSIVIVGLVPYYEM----DPD---TPISSAFASH-GMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (593)
Q Consensus 289 ~~~i~~~~y~~~~~~l~~~~p~~~l----~~~---~~~~~~~~~~-g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (593)
+..+..++|++..++..+.+|.++. +.+ ++...+.++. ++++...+..+..++++.+|..+...+....+..
T Consensus 224 Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 224 GSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887653 122 2444455543 5688888999999999999999888877776543
Q ss_pred HHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhC
Q 007682 361 MARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMD 400 (593)
Q Consensus 361 ma~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~ 400 (593)
. +.+.|++ +.......++.+...++++...
T Consensus 304 ~---------~k~~~~~-~~r~~~~~ltf~ppl~~a~~~p 333 (394)
T PF03222_consen 304 L---------FKLKNNS-SGRLKTWLLTFLPPLIFALLFP 333 (394)
T ss_pred H---------HcCCccc-cchHHHHHHHHHhHHHHHHHCc
Confidence 3 2221212 2223345555555565555544
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.72 E-value=1.8e-14 Score=150.23 Aligned_cols=356 Identities=14% Similarity=0.052 Sum_probs=255.9
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhC
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVG 125 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~-~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG 125 (593)
.|++.+.+..+++..|+++|+|++.++-.. ...|- ......++.+++....++++.|...++|+.-+.-..+++++|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~--a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVM--SGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 346789999999999999999999998753 23344 366777889999999999999999999988889999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSAD-SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
+.+..+++..+.+-......++..+.++.+...++... +.|.. .-++.+.+++..+.+.|.|...
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~--------------~~~llF~~~~~~iv~~gt~~vd 150 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPAR--------------AAGFGFALLVAFVVWLSTKAVS 150 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHH--------------HHHHHHHHHHHHHHHhhhhHHH
Confidence 99888777777666666667777888888877774311 11221 2367777788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhH
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPL 284 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ 284 (593)
++|+++...+++.++..+.....+...++..+. ....+..+...+.+....+++|.=...++++.+..++-.|.++|
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~---~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~ 227 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGHVQPATLFNV---AESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVK 227 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhcc---ccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHH
Confidence 999999999999888776665443222221111 00111223457788889999999999999999998765568999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCC----CCC---hHHHHHHH-cchhHHHHHHHHHHHHHHHHHHhhhhcchhH
Q 007682 285 GIGTALSICCALYMLVSIVIVGLVPYYEMD----PDT---PISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPR 356 (593)
Q Consensus 285 ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~----~~~---~~~~~~~~-~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR 356 (593)
+++.+..+..++|++..++....+|+++.. ..+ .+.+...+ .+.++...+..+...+++.+|..+...+...
T Consensus 228 ~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d 307 (414)
T PRK10483 228 CLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFD 307 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876631 122 22233443 3556777888888888999888887777766
Q ss_pred HHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007682 357 ILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (593)
Q Consensus 357 ~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~ 431 (593)
.+..+-+ +.+++ +-......++.+...++++.+.-..+..+...+.........+..+..|+.|+
T Consensus 308 ~l~D~~k---------~~~~~-~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~lM~~~~Rk 372 (414)
T PRK10483 308 YLADLFG---------FDDSA-MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRK 372 (414)
T ss_pred HHHHHhC---------CCCcc-ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655433 11111 22233455677777777777665666666667766666666666666555443
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.70 E-value=4e-14 Score=147.56 Aligned_cols=355 Identities=12% Similarity=0.048 Sum_probs=252.2
Q ss_pred ChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHH
Q 007682 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (593)
Q Consensus 52 ~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~-~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~ 130 (593)
+.+..+++..|+++|+|++.++-..+ ..|- ......++.++++...++++.|...++|+.-+.-+.+++++|+.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 66779999999999999999987532 3344 36677788999999999999999999998888999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007682 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (593)
Q Consensus 131 ~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~ 210 (593)
+++..+.+-......++..+.++.++..++...+ .+...+..++.+.+++..+.+.|.|...++++++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~------------~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l 155 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLG------------YHANPRIVGICTAIFVASVLWISSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhcc------------CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 7777776655556667777788888777642110 0111123467778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHH
Q 007682 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTAL 290 (593)
Q Consensus 211 ~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~ 290 (593)
...+++.++..+.....+...++........ .....+..++.++..++++|.=...+++++...++-.|.++|+++.+.
T Consensus 156 ~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~-~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs 234 (415)
T PRK09664 156 LGLKIISFVIVFGSFFFQVDYSILRDATSTT-AGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGS 234 (415)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHhcCcccc-ccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHH
Confidence 9999988877666654432222211100000 000112346778888999998899999999998766678999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCC----CCC---hH-HHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007682 291 SICCALYMLVSIVIVGLVPYYEMD----PDT---PI-SSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 291 ~i~~~~y~~~~~~l~~~~p~~~l~----~~~---~~-~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama 362 (593)
.+..++|++...+....+|+++.. ... .+ ....+...+++...+..+...+++.+|..+...+....+..+-
T Consensus 235 ~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~ 314 (415)
T PRK09664 235 LLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLF 314 (415)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988876541 111 22 2233345667888888888888888888877666666555442
Q ss_pred hcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007682 363 RDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (593)
Q Consensus 363 ~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~ 431 (593)
+ +.+++ +-......++.+.-.++.++..-..+..+...+.........+..+..|+.|+
T Consensus 315 ~---------~~~~~-~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM~~~~Rk 373 (415)
T PRK09664 315 K---------IDNSH-GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARK 373 (415)
T ss_pred C---------CCCcc-ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 21212 23334456777777777777766667677777777666666666666665553
No 48
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.67 E-value=4.2e-14 Score=144.76 Aligned_cols=296 Identities=18% Similarity=0.260 Sum_probs=222.1
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccC-C------Cccccch
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-A------GSAYHYS 120 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~-~------GG~y~~~ 120 (593)
++.+|.+++.+.++++.+|+|....... +...+||++++++++.+++...+.+.-+-|+..|.+ + ||+.+|.
T Consensus 60 ~~~vS~FqAl~~sla~~VGtGNIaGVAt-AI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi 138 (452)
T COG1115 60 KGGVSSFQALMTSLAARVGTGNIAGVAT-AIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYI 138 (452)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHH-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHH
Confidence 4679999999999999999998887766 668899998888888899999999999999999972 2 8999999
Q ss_pred HHHhCch-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHH
Q 007682 121 YICVGEG-VAWLIGWALILEYT-IGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (593)
Q Consensus 121 ~~~lG~~-~g~~~gw~~~~~~~-~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~ 198 (593)
++.+|.+ .|-+.+....+.+- ......+.+.++.+...++ .|.+ ..++++.++...+...
T Consensus 139 ~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~----~~~~--------------~~gi~la~l~~~VI~G 200 (452)
T COG1115 139 EKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG----IPPL--------------VTGIVLALLVALVIFG 200 (452)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC----CcHH--------------HHHHHHHHHHHHHHHc
Confidence 9999966 45555555555555 3555566666666555543 2322 3588888888899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----------ccCCCCCCCCCCCCCch-hHHHHHHHHHHHHHh---h
Q 007682 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGF-----------KTGWSGYELPTGYFPFG-VNGMLAGSATVFFAF---I 263 (593)
Q Consensus 199 G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~p~g-~~~~~~~~~~~~~a~---~ 263 (593)
|+|...++.......+-+..++..+..+..+. ++.++.....+++.... ...+..|+....|+- .
T Consensus 201 Gi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGm 280 (452)
T COG1115 201 GIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGM 280 (452)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccC
Confidence 99999999999999988887776665554321 22222211112222111 124667888888887 7
Q ss_pred hhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC--CCCh-HHHHHHHcchhHHHHHHHHHHH
Q 007682 264 GFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD--PDTP-ISSAFASHGMHWASYVITIGAV 340 (593)
Q Consensus 264 G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~--~~~~-~~~~~~~~g~~~~~~iv~i~~~ 340 (593)
|....++.+.+++||.|+--.+++...+.+.+++....+++...-.++..+ .... ...++++..++|..+++.+..+
T Consensus 281 Gsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~ 360 (452)
T COG1115 281 GSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALF 360 (452)
T ss_pred CcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 888888999999999999888888888878888888777777665543332 2223 3457888888899999999999
Q ss_pred HHHHHHHhhhhcchhHHHHHHH
Q 007682 341 TALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 341 ~~~~~s~~~~~~~~sR~l~ama 362 (593)
+..+++++++++..-|.+.-+.
T Consensus 361 lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 361 LFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999887764
No 49
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.67 E-value=1.6e-14 Score=149.93 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=210.8
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------Cccccch
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSA-------GSAYHYS 120 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~-------GG~y~~~ 120 (593)
++++|.+++.+.++++.+|.|....... +...+||++++++++.+++.....++-.-|+.+|.+. ||...|.
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~-AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi 94 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVAT-AIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYI 94 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHH-HHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHH
Confidence 3579999999999999999998887766 6688999988888899999999999999999998731 8999999
Q ss_pred HHHhCchH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHH
Q 007682 121 YICVGEGV-AWLIGWALILEYTIG-GSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCV 198 (593)
Q Consensus 121 ~~~lG~~~-g~~~gw~~~~~~~~~-~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~ 198 (593)
++.+|.+| +.+.+.+....+... ....+.+.++.++..++ .|. ...++++.+++.++...
T Consensus 95 ~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~----i~~--------------~~~gi~l~~l~~~vi~G 156 (416)
T PF01235_consen 95 EKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFG----IPP--------------WITGIILAILVALVIFG 156 (416)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc----ccH--------------HHHHHHHHHHHHHHHHc
Confidence 99999775 333333323333222 22333333333332221 222 23577888888888899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC-------CCCCCCCCCCCCchhHH------HHHHHHHHHHHh---
Q 007682 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTG-------WSGYELPTGYFPFGVNG------MLAGSATVFFAF--- 262 (593)
Q Consensus 199 G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~p~g~~~------~~~~~~~~~~a~--- 262 (593)
|+|+..++...+..++.+.+++..+..+..+..+- ++...+++... -|..+ +-.|+....|+-
T Consensus 157 GikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~-GG~~G~~i~~ai~~Gv~Rg~fSNEAG 235 (416)
T PF01235_consen 157 GIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAF-GGFAGSTIMMAIRQGVARGLFSNEAG 235 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccch-hhHHHHHHHHHHHHhhhhhhccCCCC
Confidence 99999999999999999998877776665432210 11111111111 12222 234666777777
Q ss_pred hhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC---CChHHHHHHHcchhHHHHHHHHHH
Q 007682 263 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDP---DTPISSAFASHGMHWASYVITIGA 339 (593)
Q Consensus 263 ~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~---~~~~~~~~~~~g~~~~~~iv~i~~ 339 (593)
.|....++-+.|++||.|+--.+++-..+.+.+++.+..+++...-.++.... .+-..++|++..++|..+++.++.
T Consensus 236 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l 315 (416)
T PF01235_consen 236 LGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIAL 315 (416)
T ss_pred CChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 78888899999999999998888888888888888777777766554332221 223456788777789999999999
Q ss_pred HHHHHHHHhhhhcchhHHHHHHH
Q 007682 340 VTALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 340 ~~~~~~s~~~~~~~~sR~l~ama 362 (593)
++..+++++++.+...+.+.-+.
T Consensus 316 ~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 316 FLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999998876664
No 50
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.67 E-value=2.7e-13 Score=142.08 Aligned_cols=346 Identities=15% Similarity=0.171 Sum_probs=241.9
Q ss_pred ChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHH
Q 007682 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (593)
Q Consensus 52 ~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~ 130 (593)
+.+..+++-.|+.+|+|++.++-.. ..+|.. .....++++.+....++.++|...+.|+..+....+++.+|+++++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~--~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAA--AGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 5678889999999999999998753 334554 5666677788788899999998888887778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 007682 131 LIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIV 210 (593)
Q Consensus 131 ~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~ 210 (593)
+.+..|.+.......++..+.++.+...+.... ..+.+ .....+.+.++...+.+.|.|...++++++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~-------~~~i~-----~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWT-------GISMS-----PTAGVLLFTLVAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc-------cCCCC-----hHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999988887888888886666665553211 00111 012345555566667888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHH
Q 007682 211 TTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTAL 290 (593)
Q Consensus 211 ~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~ 290 (593)
...+++.+++.......+...++.... |.+...++.++..++++|.=...+++++...++-+|.++|+++.+.
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~~-------~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs 222 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLTL-------PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcC-------CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHH
Confidence 999998887666655443222222110 1111137778889999999999999999999877788999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCC----CCC---hHHHHHHH-cchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007682 291 SICCALYMLVSIVIVGLVPYYEMD----PDT---PISSAFAS-HGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 291 ~i~~~~y~~~~~~l~~~~p~~~l~----~~~---~~~~~~~~-~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama 362 (593)
++..++|++...++.+..|.++.. ++. +..+.+++ .+.+|...++.+...+++.+|..+...+....+..+-
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 302 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLF 302 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999877641 222 33344443 5678899999999999999999988888887776654
Q ss_pred hcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 007682 363 RDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRY 428 (593)
Q Consensus 363 ~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~ 428 (593)
+.+ +++ .-......++.+...+++....-.-+..+.-.+...+..+.....+..++
T Consensus 303 ~~~---------~~~-~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~ 358 (403)
T PRK15132 303 QRR---------NTV-GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQ 358 (403)
T ss_pred ccC---------ccc-cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 111 11233445566666665555433333333334444444444444444433
No 51
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.65 E-value=7.1e-13 Score=138.27 Aligned_cols=375 Identities=13% Similarity=0.059 Sum_probs=247.3
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCccccchHHHh
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRC-PSAGSAYHYSYICV 124 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~-p~~GG~y~~~~~~l 124 (593)
-+|.=..|. ...+|+.+|+|++.+|-.. +.+|.. .++..+++..+....++.+.|..... |++.+.-.-+++.+
T Consensus 17 w~~~d~~W~--l~l~GTAIGAGmLfLPI~~--g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~l 92 (443)
T PRK13629 17 WRKSDTTWT--LGLFGTAIGAGVLFFPIRA--GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHF 92 (443)
T ss_pred CccccchHH--HHHHHHHHhHHHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHc
Confidence 344445555 4455779999999998753 345554 66667778889999999999999999 55556777999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
|+.++.+.+..|.+.......++....++.+++.+.+..+ .+ +....+.+++++.++..+...|-|...
T Consensus 93 G~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~---------~~--~~~r~l~slifv~~l~~iv~~G~~~v~ 161 (443)
T PRK13629 93 GKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLG---------FA--PLNRGFVALFLLLLMAFVIWFGKDLMV 161 (443)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---------cC--CccHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999988888888887777777665421110 00 111234688888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC-C-CCCCCch-hHHHHHHHHHHHHHhhhhhhHhhhhhh----hh-
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL-P-TGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEE----VK- 276 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~-~-~~~~p~g-~~~~~~~~~~~~~a~~G~e~~a~~~~E----~k- 276 (593)
|++.++...+++.++++.+..+.+...++....+. . +.....+ ...++.++..++++|.-.-.+++++.. .+
T Consensus 162 kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~ 241 (443)
T PRK13629 162 KVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEK 241 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcc
Confidence 99999999999999888887776544333321110 0 0000111 124677888999999888888888777 42
Q ss_pred ----C-CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC----CCCh-HHHHHHHcch---------hHHHHHHHH
Q 007682 277 ----N-PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMD----PDTP-ISSAFASHGM---------HWASYVITI 337 (593)
Q Consensus 277 ----~-P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~----~~~~-~~~~~~~~g~---------~~~~~iv~i 337 (593)
| .+|...|++..+.++..++|++..+++.+..|+++.. .+.+ +....+...+ ++..++..+
T Consensus 242 ~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~i 321 (443)
T PRK13629 242 DFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASI 321 (443)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHH
Confidence 1 1366889999999999999999999999999988752 3334 5555555554 667888888
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH
Q 007682 338 GAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFT 417 (593)
Q Consensus 338 ~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~ 417 (593)
...++..+|..+...+.--.+..+.++...-..-.|.|+| ..-. ...+...+...+....+.+.|.-+-+++.++--.
T Consensus 322 fa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~ 399 (443)
T PRK13629 322 IALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLG-KLNT-ISMIFIMGSTWVVAYANPNILDLIEAMGAPIIAS 399 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHH-HHHH-HHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHH
Confidence 8888888888888888777777777532111001133433 2222 2233333333344445555544444444443333
Q ss_pred HHHHHHHHHhcCCCCCCCCCC
Q 007682 418 MVAISVLILRYVPPDEVPVPS 438 (593)
Q Consensus 418 l~~~~~l~lr~~~~~~~~~~~ 438 (593)
+.++--...-||.|.-+++|.
T Consensus 400 il~l~P~y~i~kvp~l~~yr~ 420 (443)
T PRK13629 400 LLCLLPMYAIRKAPSLAKYRG 420 (443)
T ss_pred HHHHHHHHHHHccHHHHHhCC
Confidence 333322333345554344433
No 52
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.65 E-value=5.3e-13 Score=141.51 Aligned_cols=290 Identities=19% Similarity=0.144 Sum_probs=221.8
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCC-ccccchHHHh
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAG-SAYHYSYICV 124 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~G-G~y~~~~~~l 124 (593)
.+++-+....++.-+++++|+|++..|-. ...+|-. .+...++++.++....+++.|...+.|++. +.+.-+++.+
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a--~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVA--FGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHH--hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 55667888999999999999999998864 3456665 666778899999999999999999999984 8999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKEST 204 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~ 204 (593)
||.++.+.+..+.+.......++....++.+...+....... +.......+++...+..+.+.|-+..-
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-----------~~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-----------PLPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-----------CcchHHHHHHHHHHHHHHHHhchhHHH
Confidence 999999999999999888888898888888888775321110 012233466667777778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCC-hh
Q 007682 205 IAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRD-LP 283 (593)
Q Consensus 205 ~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~-ip 283 (593)
+.+..+...+++.++++......+....+.... +. ..+..+..++.++..++++|.+.-.+.++.+|+|++.++ ++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~--~~-~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~ 228 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHWNPANLFAL--PS-ASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVR 228 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcc--cc-cchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHH
Confidence 999999999988888777666543221111100 00 103456678999999999999999999999999998887 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCC-------CCCChHHHHHHH-cchhHHHHHHHHHHHHHHHHHHhhhhc
Q 007682 284 LGIGTALSICCALYMLVSIVIVGLVPYYEM-------DPDTPISSAFAS-HGMHWASYVITIGAVTALCSTLMGSIL 352 (593)
Q Consensus 284 ~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l-------~~~~~~~~~~~~-~g~~~~~~iv~i~~~~~~~~s~~~~~~ 352 (593)
|++..+..+..++|+.........++...- +++.....+... ...+...+...+..+++..++..+...
T Consensus 229 k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~l 305 (415)
T COG0814 229 KAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYL 305 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchh
Confidence 999999999999999999999999887632 122333333333 345567777777777777776554433
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.61 E-value=1.6e-12 Score=134.02 Aligned_cols=286 Identities=16% Similarity=0.214 Sum_probs=226.9
Q ss_pred ccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHH
Q 007682 50 NLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (593)
Q Consensus 50 ~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g 129 (593)
|+|..|...+.+..++|.+....++..+... | +++++.+++++..++..+.+..+.+++|+. ....+.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-G-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 5789999999999999999999999877554 7 889999999999999999999999999984 599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 007682 130 WLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAI 209 (593)
Q Consensus 130 ~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~ 209 (593)
.+.+..+.+.+....+...+..++.+...+.... |.+ .+...+++.+...+..|.+...|.+.+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~T--P~~--------------~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPET--PIW--------------VIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC--CHH--------------HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999888877663221 222 246677778888889999999998877
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHH
Q 007682 210 VTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTA 289 (593)
Q Consensus 210 ~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~ 289 (593)
.....++.++++.+...- ..++. +-.+..+.|+..++.+.....+.|.|.|....+.+.+|||+| ..|+...+
T Consensus 142 ~~~~~~i~~~~i~~~~~~---~~~~~---~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~-~~k~~~~~ 214 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIP---NIDWD---NLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKK-LKKSLLIA 214 (320)
T ss_pred HHHHHHHHHHHHHHHhcc---cCCHH---HeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHH
Confidence 777777766655543331 11221 123355677888999988899999999999999999999755 78999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCC-CCChHHHHHHHcchh----HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007682 290 LSICCALYMLVSIVIVGLVPYYEMD-PDTPISSAFASHGMH----WASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (593)
Q Consensus 290 ~~i~~~~y~~~~~~l~~~~p~~~l~-~~~~~~~~~~~~g~~----~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~am 361 (593)
..+++++|....+...+.++++..+ ..-|..+..+...-+ -...+.....+.+.+......+++..+.+..+
T Consensus 215 ~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 291 (320)
T PF03845_consen 215 ILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQL 291 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888876553 356777777765322 34455666667777777777777788776655
No 54
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.54 E-value=2.1e-11 Score=127.45 Aligned_cols=294 Identities=16% Similarity=0.201 Sum_probs=199.4
Q ss_pred cccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccC--C-----CccccchH
Q 007682 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS--A-----GSAYHYSY 121 (593)
Q Consensus 49 r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~--~-----GG~y~~~~ 121 (593)
+++|.+++.+..+++++|.|....... +...+||++++++++++++.....+...-++.++.+ + ||+..|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~-Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVAT-AIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHH-HHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 459999999999999999996665555 367899998777788888888888888888888762 2 44458999
Q ss_pred HHhC-chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHh
Q 007682 122 ICVG-EGVAWLIGWALILEY-TIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG 199 (593)
Q Consensus 122 ~~lG-~~~g~~~gw~~~~~~-~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G 199 (593)
+.++ |.+|.+.+.. .+.| .......+++.++.+...++ .|. ...++++.++...+...|
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~----~~~--------------~v~~i~l~~l~~~vi~GG 184 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN----VPK--------------LVTGIVLTVLTALIIFGG 184 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC----CcH--------------HHHHHHHHHHHHHHHhcC
Confidence 9987 4556665555 3333 33334455555555543321 122 234667767777777779
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----------cccCCCCCCCCCCCCCchh-HHHHHHHHHHHHHh---hh
Q 007682 200 IKESTIAQAIVTTANVLAMLFVIIAGSYLG-----------FKTGWSGYELPTGYFPFGV-NGMLAGSATVFFAF---IG 264 (593)
Q Consensus 200 ~k~~~~i~~~~~~~~li~~~~~~i~~~~~~-----------~~~~~~~~~~~~~~~p~g~-~~~~~~~~~~~~a~---~G 264 (593)
+|...++...+..++.+.++...+...... +++.++.....++...... ..+-.|+....|+- .|
T Consensus 185 ik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~G 264 (425)
T TIGR00835 185 LKRIAKISSVVVPFMALLYVIMALYIIIMNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMG 264 (425)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccC
Confidence 999999999999999888765554333321 1122221111111110000 12344777778877 78
Q ss_pred hhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCCChHHHHHHHcchhHHHHHHHHHHHH
Q 007682 265 FDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYY---EMDPDTPISSAFASHGMHWASYVITIGAVT 341 (593)
Q Consensus 265 ~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~---~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~ 341 (593)
....++.+.|++||.|+--.+++-..+.+.+++....+++...-.++ +++...-..++|+...++|..+++.+..++
T Consensus 265 sa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~l 344 (425)
T TIGR00835 265 SAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFL 344 (425)
T ss_pred cHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888889999999999888888888877877777777665554343 111112233567776677899999999999
Q ss_pred HHHHHHhhhhcchhHHHHHHH
Q 007682 342 ALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 342 ~~~~s~~~~~~~~sR~l~ama 362 (593)
..+++++++.+..-+.+.-+-
T Consensus 345 FaftTii~~~yyge~~~~yl~ 365 (425)
T TIGR00835 345 FAFSTIIGWYYYGEKNAEFLK 365 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888876663
No 55
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.18 E-value=2e-08 Score=106.15 Aligned_cols=283 Identities=15% Similarity=0.080 Sum_probs=173.3
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHH-HHHHHHHHHHHHHHHHHHHHHhhhccCCCc-----cccch
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPAL-ALSFLIAGIASAFSAFCYAELASRCPSAGS-----AYHYS 120 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~-i~~~ii~~l~~l~~al~~ael~s~~p~~GG-----~y~~~ 120 (593)
.+|+.++++..+-+++.++|.|+..++- +..+.|... +...++.++..+-++....+.-...+.-.| .-.-.
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~--A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPY--ALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHH--HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 4577999999999999999999999885 456778764 666666777766666666666666665555 33356
Q ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhh
Q 007682 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (593)
Q Consensus 121 ~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~ 200 (593)
++++|++.-.++++...+........+....++.+..+++....... ... ...+.-+++.+.+.... +...
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~-~~~f~iif~~i~~~~s~---lp~~ 182 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLD-KQYFIIIFGLIVLPLSQ---LPNF 182 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----ccc-ceehhhhHHHHHHHHHH---CCCc
Confidence 67788777556777666655555555666666777766643321000 010 11111112222222222 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHH-HHHHHHHHHHhhhhhhHhhhhhhhhCCC
Q 007682 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM-LAGSATVFFAFIGFDAVASTAEEVKNPQ 279 (593)
Q Consensus 201 k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~-~~~~~~~~~a~~G~e~~a~~~~E~k~P~ 279 (593)
....++........+......+..+...+...+... .+....+..+. +.++....|+|.|.-...+.-.++|+|+
T Consensus 183 ~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~----~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~ 258 (437)
T KOG1303|consen 183 HSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPS----GGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPP 258 (437)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcc----cCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCch
Confidence 334444444444444444444455544332221110 11111111112 6788889999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHc-chhHHHHHHHHHHHHHHHHHHhhhh
Q 007682 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASH-GMHWASYVITIGAVTALCSTLMGSI 351 (593)
Q Consensus 280 r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~-g~~~~~~iv~i~~~~~~~~s~~~~~ 351 (593)
+ ++|+.+.+..+++++|+..++.-..+++.+..+ +...+. ...|......+.+.+-.+.+..-..
T Consensus 259 ~-f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a 324 (437)
T KOG1303|consen 259 K-FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIYA 324 (437)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhhh
Confidence 8 999999999999999999999988888754332 223333 2556666666666666666554433
No 56
>PLN03074 auxin influx permease; Provisional
Probab=99.12 E-value=2.6e-07 Score=99.73 Aligned_cols=238 Identities=11% Similarity=-0.002 Sum_probs=126.7
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHH----HHHHHHHHhhhccCCCccc-----
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAF----SAFCYAELASRCPSAGSAY----- 117 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~----~al~~ael~s~~p~~GG~y----- 117 (593)
.+.-+.++...-.+...+|.|++.++.. ...+|.. .++..++.++++.= ..-++-|...|.|+++-.|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~A--f~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYS--FSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHH--HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 3445666666668888999999998874 4566764 44444444433332 3335667788887744222
Q ss_pred cc---hHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHH
Q 007682 118 HY---SYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTG 194 (593)
Q Consensus 118 ~~---~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 194 (593)
.| ..+.+||.++.+......+.............+..+.. ++.. .....+.-+++++.+.+..
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~-l~~~------------~~~~~~~~i~~~v~~~~~~- 186 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYY-INDN------------LDKRTWTYIFGACCATTVF- 186 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhh-hCCC------------cCCCeEEeehHHHHHHHHH-
Confidence 22 33357888877664444333332222222221111111 1100 0011111112222222222
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhh
Q 007682 195 LLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEE 274 (593)
Q Consensus 195 l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E 274 (593)
....|..+++..+.....+.....+.+..........++ .. .+..+..++.++...+|+|.|.-...+.-+|
T Consensus 187 --i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~-----~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~ 258 (473)
T PLN03074 187 --IPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVK-----HS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHA 258 (473)
T ss_pred --ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-----CC-CchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence 233455555443333332322222222222222111111 11 1234556777777889999999999999999
Q ss_pred hhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 007682 275 VKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPY 310 (593)
Q Consensus 275 ~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~ 310 (593)
||||++ +++....+...+..+|+..++..+...++
T Consensus 259 M~~P~~-F~~~~~l~~~~v~~~y~~~~~~gY~~fG~ 293 (473)
T PLN03074 259 MWKPQK-FKYIYLAATLYVLTLTLPSAAAVYWAFGD 293 (473)
T ss_pred ccChhc-ccchHHHHHHHHHHHHHHHHHeeeeeech
Confidence 999964 89888888888888888876666665554
No 57
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.10 E-value=1.3e-07 Score=98.68 Aligned_cols=347 Identities=17% Similarity=0.138 Sum_probs=203.0
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH--HHHHHHHHHHHHHH---HHHHHHHHhhhccCC---------
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA--LALSFLIAGIASAF---SAFCYAELASRCPSA--------- 113 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~--~i~~~ii~~l~~l~---~al~~ael~s~~p~~--------- 113 (593)
++..+..+...--+=+++|+|++..+. +...+|.. .+...+++.+...+ ..-|--++++++.++
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~--AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPL--AFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChH--HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 344777777777777889999998887 44566663 44445555554433 455777888886332
Q ss_pred ---CccccchHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHH
Q 007682 114 ---GSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVL 190 (593)
Q Consensus 114 ---GG~y~~~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 190 (593)
.+.|.| .|.+|+...+++-....+.+.-....+..-.++.+...+.... + .. .+.-..+++.
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~--~--------~~----~s~~~~i~~~ 186 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS--P--------GV----LSVRLYILIQ 186 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC--C--------CC----ccHHHHHHHH
Confidence 122335 6667777777777777777766655555555555555543110 0 00 0011122222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhh
Q 007682 191 IVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVAS 270 (593)
Q Consensus 191 l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~ 270 (593)
+...+...-+|..+++.-.....+++.++.+.+...+. ...-+ +.+..+.+ .++.++-..+..++|+|-|.-.+-+
T Consensus 187 ~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~-~~~~~-~~~~~~~~--~~~~~~~lf~GtaifafEGig~VLP 262 (449)
T KOG1304|consen 187 LPPLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYL-VQDLP-PTSDLPAV--TGWSGLPLFFGTAIFAFEGIGMVLP 262 (449)
T ss_pred HHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHH-HhccC-Cccccccc--cchhhhHHHHHHHHHHhccceEEEe
Confidence 22233333456666666666666666665555544332 22222 11111222 2366777778899999999999999
Q ss_pred hhhhhhCCCCChh---HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Q 007682 271 TAEEVKNPQRDLP---LGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTL 347 (593)
Q Consensus 271 ~~~E~k~P~r~ip---~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~ 347 (593)
+=+++|+|++ +| ..+-.++.++.++|+...+.-++..+.+--+. +--+....|+...+.+...++.+-+-
T Consensus 263 lEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~s------ITLNLP~~~l~~~Vkl~~ai~I~ls~ 335 (449)
T KOG1304|consen 263 LENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGS------ITLNLPQEILSQTVKLLLAIAIFLTY 335 (449)
T ss_pred hhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccce------EEecCCccHHHHHHHHHHHHHHHHcC
Confidence 9999999975 77 99999999999999998888777776543221 11123334555566666666666555
Q ss_pred hhhhcchhHHHHHHHhcCCCcccccccccc----cccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHH
Q 007682 348 MGSILPQPRILMAMARDGLLPPFFSDVNKT----TQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISV 423 (593)
Q Consensus 348 ~~~~~~~sR~l~ama~dg~lP~~~~~~n~~----~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~ 423 (593)
--.++..-++++.- +.+++++ +++ +.....-++++.+++ .++++++.++++.+......-.++.-++
T Consensus 336 pLQ~yv~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA---~~iPnL~~fisLVGs~~~s~L~li~P~l 406 (449)
T KOG1304|consen 336 PLQFYVPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIA---VAVPNLALFISLVGSVSCSLLALIFPPL 406 (449)
T ss_pred chhhhhhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHH---HHCCcHHhhHHHHHHHHHHHHHHHccHH
Confidence 55555566665543 2223331 111 011222222222222 2268899999988887777777776677
Q ss_pred HHHhcCCC
Q 007682 424 LILRYVPP 431 (593)
Q Consensus 424 l~lr~~~~ 431 (593)
+-+....+
T Consensus 407 iel~~~~~ 414 (449)
T KOG1304|consen 407 IELITFYP 414 (449)
T ss_pred HHHHHhcc
Confidence 76655444
No 58
>PTZ00206 amino acid transporter; Provisional
Probab=99.09 E-value=4.6e-07 Score=98.13 Aligned_cols=251 Identities=14% Similarity=0.166 Sum_probs=145.5
Q ss_pred hHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHH
Q 007682 53 IPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWL 131 (593)
Q Consensus 53 ~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~ 131 (593)
.....+--+.+++|+|++..+.. ...+|.. .++..++.++++........+.+.+ ++.-+...-+++++|++..++
T Consensus 62 ~~~s~fnL~~~~iGaGILsLP~A--f~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~~ 138 (467)
T PTZ00206 62 IAASAFNIASSTVGAGIVGLPSA--ANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSYY 138 (467)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHHH
Confidence 35555556677899999998874 4556664 4444455555555555555555554 333345556677789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 007682 132 IGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVT 211 (593)
Q Consensus 132 ~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~ 211 (593)
+....++.......++....++.+...+.+.. .+++..... ...... ..+.+.+++-+...+.++..++++.+..
T Consensus 139 v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~-~~~~~~~~~--~~r~~~--~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 139 VAATRAFHGFSACVAYVISVGDILSATLKGTN-APDFLKQKS--GNRLLT--SLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccchhhhcc--CcEEee--eehhhhHhhhcccccchHHHHHHHHHHH
Confidence 98888887777777777777777777764322 122221100 000001 1111122233333455666666554433
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCC----CCCCCCCc-hhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCC-CChhHH
Q 007682 212 TANVLAMLFVIIAGSYLGFKTGWSGYE----LPTGYFPF-GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQ-RDLPLG 285 (593)
Q Consensus 212 ~~~li~~~~~~i~~~~~~~~~~~~~~~----~~~~~~p~-g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~-r~ip~a 285 (593)
...+...+.+++.........+.+... ...+...+ .....+.++....|+|.+.-.....-+|+|||+ |+..+.
T Consensus 214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v 293 (467)
T PTZ00206 214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLA 293 (467)
T ss_pred HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHH
Confidence 222222222211111111111111000 00010001 113577888999999999999999999999975 678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCC
Q 007682 286 IGTALSICCALYMLVSIVIVGLVPYY 311 (593)
Q Consensus 286 i~~~~~i~~~~y~~~~~~l~~~~p~~ 311 (593)
+..+..++.++|.+..+.-+..++.+
T Consensus 294 ~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 294 STIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccc
Confidence 99999999999999998888877643
No 59
>PRK11375 allantoin permease; Provisional
Probab=98.95 E-value=4.1e-05 Score=83.21 Aligned_cols=327 Identities=16% Similarity=0.101 Sum_probs=161.1
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~---~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
-+|+.+++|...+=++.....+.+...+... ..|.+ ++++.+++.++........+..+.++.. +.....|..
T Consensus 23 ~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l--~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~sR~s 98 (484)
T PRK11375 23 SQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF--ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMILRAS 98 (484)
T ss_pred cccCCcHHHHHHHHHHHhccHHHHHHHHHHH--HccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHhHHHH
Confidence 4577999999998777776665553333222 13443 4444444444444444444444444332 467788999
Q ss_pred hCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH----ccCCChhhhhhhccCCCCccchhHH-HHHHHHHHHHHHH
Q 007682 124 VGEGVAWLIGWALI-LEYTIGGSAVARGISPNLAMLF----GSADSLPFFMARQQIPGLGIIVDPC-AAILVLIVTGLLC 197 (593)
Q Consensus 124 lG~~~g~~~gw~~~-~~~~~~~a~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~l~~ 197 (593)
||.+-+.+.+.... +..+.+.+......++.+...+ ++..+++.... ..+.+ ..+.+ .+++.++.+.+..
T Consensus 99 FG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~---~~g~~-~~~~i~~~i~~~l~~~~~~ 174 (484)
T PRK11375 99 YGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFT---LLGLS-LPGLITFLIFWLVNVGIGF 174 (484)
T ss_pred HccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc---cCCCc-HHHHHHHHHHHHHHHHHHH
Confidence 99987777777763 4555555555555555544333 22221111110 00111 11122 2233344555567
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC-C-CCCCC--CchhHHHHHHHHHHHHHhh-hhhhHhhhh
Q 007682 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYE-L-PTGYF--PFGVNGMLAGSATVFFAFI-GFDAVASTA 272 (593)
Q Consensus 198 ~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~--p~g~~~~~~~~~~~~~a~~-G~e~~a~~~ 272 (593)
.|.|..+++..+...+.++..+.+.+..+... +++... . +.+.. ......+..++...+-++. +.-..+.++
T Consensus 175 ~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~t 251 (484)
T PRK11375 175 GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV---GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFT 251 (484)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchh
Confidence 89999999988888887766655554444332 121111 0 11110 1112234444433333333 444566777
Q ss_pred hhhhCCCCChhHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHH-hhh
Q 007682 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIVI-VGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTL-MGS 350 (593)
Q Consensus 273 ~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l-~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~-~~~ 350 (593)
...|+|+. .-++...+..+...+.....+.. ............+| .++..+.+..++..+..+..+++..++- ...
T Consensus 252 Ry~k~~~~-~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N 329 (484)
T PRK11375 252 QNAHSFRA-QALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFAVLVILMTTISTNATGN 329 (484)
T ss_pred cccCChhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 77787643 44555555555544432222222 11111111112333 3344444444444455555566655553 345
Q ss_pred hcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhh
Q 007682 351 ILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM 399 (593)
Q Consensus 351 ~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~ 399 (593)
++++.--+ .+.+||.. |+| ++.++.++++.++..+.
T Consensus 330 ~ys~~~~l-----~~l~pk~i---~~~-----~~~~i~~iig~~~~pw~ 365 (484)
T PRK11375 330 IIPAGYQI-----AALAPTKL---TYK-----NGVLIASIISLLICPWK 365 (484)
T ss_pred cccHHHHH-----HHhCcCcc---chh-----hHHHHHHHHHHHhccHH
Confidence 55555443 34566432 333 46677767766655443
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.88 E-value=6.2e-06 Score=81.82 Aligned_cols=267 Identities=15% Similarity=0.209 Sum_probs=161.7
Q ss_pred HHHHhhhhhhhhHHHhHHHHHHhcc---ChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHHHH
Q 007682 57 VAIGVGSTIGAGVYILVGTVAREHS---GPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIG 133 (593)
Q Consensus 57 ~~l~i~~~iG~G~~~~~~~v~~~~~---G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~g 133 (593)
.+..+++++|+|. ..-..+ .+.- |...+++.++++++....+....+++.++.. ..--.+.++.+||.++.+.-
T Consensus 9 ~f~~ig~~vGAGf-AsGqEi-~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAGF-ASGQEI-MQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhcccc-cchHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHH
Confidence 3445567888883 322222 2333 5558999999999999999999999999984 34667999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHh-hHHHHHHHHHHH
Q 007682 134 WALILEYTIGGSAVARGISP-NLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVG-IKESTIAQAIVT 211 (593)
Q Consensus 134 w~~~~~~~~~~a~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G-~k~~~~i~~~~~ 211 (593)
....+ +.++.+.+..+.+. .+.+.++ .|.|.. +++++.+..+...++ ++...+++.+.+
T Consensus 86 ~~iif-~lf~~~vVM~AGags~~~e~~~----lP~wiG--------------ali~i~~v~i~lfl~~vegi~tvn~iI~ 146 (349)
T COG3949 86 IIIIF-FLFSTAVVMLAGAGSLLEEMFG----LPYWIG--------------ALIIILLVLILLFLGRVEGIITVNGIIT 146 (349)
T ss_pred HHHHH-HHHHHHHHHhccchhHHHHHhC----ccHHHH--------------HHHHHHHHHHHHHHhcccceeeeheeHH
Confidence 55443 45555555444433 4444443 455532 355555566666666 777778887777
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHH
Q 007682 212 TANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALS 291 (593)
Q Consensus 212 ~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~ 291 (593)
.+.++.+..+........-.+.+ .....-.++ |..-..+ ..++=-.........+++|+|++ |+.-++-+.+-+
T Consensus 147 P~LIi~l~~v~~~~~f~~~~~~a---~~~~~~~~~-W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~ggl 220 (349)
T COG3949 147 PFLIIILVLVTLSFQFTNLGNAA---QIVLTKQGN-WKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGL 220 (349)
T ss_pred HHHHHHHHHHHHHHHHhhccchh---hhcCCcCCC-hHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhH
Confidence 77777654443332221111111 101111222 2211111 11111113344566778999995 567788888877
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcc
Q 007682 292 ICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILP 353 (593)
Q Consensus 292 i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~ 353 (593)
+.+++..+....+....| +-.+.+-|..+..++.. +....++.+...+...++.++.+++
T Consensus 221 Ilgvl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 221 ILGVLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766655 33355678888888776 4444566666777777777766654
No 61
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=98.88 E-value=8e-10 Score=79.15 Aligned_cols=25 Identities=52% Similarity=1.008 Sum_probs=24.1
Q ss_pred ccccCCchhhhHHHHHHHHHhhcCC
Q 007682 569 FMCPFVPLLPIACILINVYLLINLG 593 (593)
Q Consensus 569 f~~P~vP~~P~~sI~~N~~Lm~~l~ 593 (593)
||||+||++|++||++|+|||.||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~ 25 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLS 25 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999986
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.72 E-value=0.0003 Score=74.16 Aligned_cols=170 Identities=14% Similarity=0.009 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 007682 85 LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS 164 (593)
Q Consensus 85 ~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~ 164 (593)
.+++.+++.++......+.++++.+..-+ ...-.+..+|.+-+.+.....++.++-+.+......+.. .+....
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a----~~~~~~ 127 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA----IGSGTG 127 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc----cccCCC
Confidence 66667777777666777777777776543 566677789999888888887777766666554433332 111111
Q ss_pred hhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 007682 165 LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYF 244 (593)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 244 (593)
.|.+ ...+++.++.+....+|.|...+++++.....++..+..+...+-. ....... ....
T Consensus 128 ~~~~--------------~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~---~~~~~~~--~~~~ 188 (442)
T COG1457 128 LPVW--------------AGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRS---KGGLDAL--WVKG 188 (442)
T ss_pred CcHH--------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccccee--eccC
Confidence 1211 1244455567777889999999999999998888776665544421 1111111 1112
Q ss_pred CchhHHHHHHHHHHHHHh-hhhhhHhhhhhhhhCCC
Q 007682 245 PFGVNGMLAGSATVFFAF-IGFDAVASTAEEVKNPQ 279 (593)
Q Consensus 245 p~g~~~~~~~~~~~~~a~-~G~e~~a~~~~E~k~P~ 279 (593)
|..+.+++.++..++-.+ .+--.++.++.-.|+|+
T Consensus 189 ~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t 224 (442)
T COG1457 189 PTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPT 224 (442)
T ss_pred CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCc
Confidence 444455666655554333 33345667777777765
No 63
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.71 E-value=3.8e-09 Score=112.91 Aligned_cols=360 Identities=14% Similarity=0.098 Sum_probs=193.8
Q ss_pred cccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCccccchHHHh
Q 007682 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCP---SAGSAYHYSYICV 124 (593)
Q Consensus 49 r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p---~~GG~y~~~~~~l 124 (593)
||-|+++....-+.+++|.|++..+.. ...+|.. .++..++.++.+......+.|.....+ +.-....-.++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~a--f~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYA--FAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHH--HHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 467899999999999999999999875 3456764 555566677777778888888888765 3333444557889
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHH-HHhhHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL-CVGIKES 203 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~-~~G~k~~ 203 (593)
|+++++++.....+........+....++.+..++...... . ...... ..++...+...+. .+-.+..
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~------~--~~~~~~---~~~i~~~i~~pls~~~~l~~l 147 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD------L--FISRYV---WIIIFALIVLPLSFLKNLKSL 147 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc------c--cccccc---cccccccccccccccchhhHH
Confidence 99988887777766555544444444445554444321100 0 000010 0111111111111 1223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCC--C
Q 007682 204 TIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQR--D 281 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r--~ 281 (593)
+.++.+.....+... .+.+.................+...+..+.++...+....|+|.+........+|+|+|+| .
T Consensus 148 ~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~ 226 (409)
T PF01490_consen 148 RYLSILGLFSIFYFI-VIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKK 226 (409)
T ss_pred HHHhhhhhhccceee-eeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccc
Confidence 333222222211110 1111111111111111111111122345567889999999999999999999999999875 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchh-HHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007682 282 LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH-WASYVITIGAVTALCSTLMGSILPQPRILMA 360 (593)
Q Consensus 282 ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~-~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (593)
+.|+...+..++.++|.+....-....+.+ .++ ++..+.... +...+..+...+..+.+.-.......+.+..
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~-~~~-----~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 300 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDS-VQG-----NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLEN 300 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeee-ecc-----hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhh
Confidence 459999999999999999998887776542 111 333444332 4555556566666655555455555555555
Q ss_pred HHhcC-----CCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC
Q 007682 361 MARDG-----LLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGT--LLAFTMVAISVLILRYVP 430 (593)
Q Consensus 361 ma~dg-----~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~--l~~y~l~~~~~l~lr~~~ 430 (593)
.-+.. ..++.-.+ ++..+.-.+.. +......+-....+++.+.++.+... .+.|.+-...++++++++
T Consensus 301 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~ 375 (409)
T PF01490_consen 301 LLFKRAASSRDSPKNTPS-SRWLRYLIRII-LVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRK 375 (409)
T ss_pred heeccccccccccccccc-cceeeeeeecc-hhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccc
Confidence 43321 11100000 00001111111 11111111233467888777776544 456666665666655444
No 64
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.68 E-value=0.0005 Score=74.26 Aligned_cols=246 Identities=11% Similarity=-0.015 Sum_probs=126.7
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP---ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~---~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
-+|+.++++...+=++..+....+..-+... . .|. .++++.+++.++........+..+.++-. ..+...|..
T Consensus 10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~-~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~sR~~ 85 (442)
T TIGR00800 10 EERTWSFLNYFSLWLGAAFNIATWAIGALGL-P-LGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVLSRAS 85 (442)
T ss_pred ccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchhhhhh
Confidence 3466899999988777776665555443322 1 232 36666666655555555555555655443 367788999
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHH--HHHHhhH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTG--LLCVGIK 201 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--l~~~G~k 201 (593)
||.+-+.+.+...++..+.+.+..+...++.+..++.... +... +.+......+...++++..+.. ....|.|
T Consensus 86 FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~--~~~~---~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~ 160 (442)
T TIGR00800 86 FGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIF--PGYL---HLGNGMTTLELICFIIFWALVLVFLFFFGYK 160 (442)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc--cccc---ccCCcccHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 9999888888888888888888777777666655543211 1000 0000000012233333333332 3445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC-CCCCchhHHHHHHHHHHH-HHhhhhhhHhhhhhhhhCCC
Q 007682 202 ESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPT-GYFPFGVNGMLAGSATVF-FAFIGFDAVASTAEEVKNPQ 279 (593)
Q Consensus 202 ~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~-~~~p~g~~~~~~~~~~~~-~a~~G~e~~a~~~~E~k~P~ 279 (593)
...+.+.......++.+++.+ ....+..... +...... ...+.....++.++...+ +..++.-.++.++...|+|+
T Consensus 161 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~g~~-~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~ 238 (442)
T TIGR00800 161 IRHLFEWLAVVPPFAAFGMLI-WALSKAHGKG-PLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKK 238 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCC-ccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc
Confidence 555555544444444433332 2222211110 0010111 011223344555554433 22345556778888888865
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 007682 280 RDLPLGIGTALSICCALYMLVSIVI 304 (593)
Q Consensus 280 r~ip~ai~~~~~i~~~~y~~~~~~l 304 (593)
. -.++...+.....+...+..+..
T Consensus 239 ~-~~~~~~~~~~~~~~~~~~~g~~~ 262 (442)
T TIGR00800 239 T-AIWGQFLALPGGFTLTCFFGILG 262 (442)
T ss_pred c-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 44555555555544444443333
No 65
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.46 E-value=0.0021 Score=70.01 Aligned_cols=288 Identities=15% Similarity=0.081 Sum_probs=147.2
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHH-HHHH---HHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALA-LSFL---IAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i-~~~i---i~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
.|+++++....--+++.+|.+.+......+.. .|...+ ..+. .+.+.....+.-+.++.++.. .-..++|.++-
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN-AITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 48899998888888888888777655544433 344311 1111 111111112222333344432 34688888988
Q ss_pred hCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 007682 124 VGEGV-AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (593)
Q Consensus 124 lG~~~-g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~ 202 (593)
+|++. ..+++....+....+.+....+.+..++..++ .|.+.. +.+..++.+......|+|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g----i~~~~~-------------iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG----LSYLTA-------------LFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhHHH
Confidence 99654 45555555555555555555555556655553 222211 1122223444555678898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC------CCCCC---CCCCchh--HHHHHHH-HHHHHHhhhhhhHhh
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSG------YELPT---GYFPFGV--NGMLAGS-ATVFFAFIGFDAVAS 270 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~------~~~~~---~~~p~g~--~~~~~~~-~~~~~a~~G~e~~a~ 270 (593)
..+...+-..++++..+++.+...... .++.. ...++ ...+.++ ..++... ....+...+......
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~--gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~ 257 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAG--GGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAV 257 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHH
Confidence 888777766666665554444333221 01100 00000 0111111 1111111 011122223222233
Q ss_pred hhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHh---hccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Q 007682 271 TAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVG---LVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTL 347 (593)
Q Consensus 271 ~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~---~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~ 347 (593)
-.-..||+ |+..|+...+.+....++....+.-.. ..| +..+++..++....+...++...++..+.+.+..++.
T Consensus 258 R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p-~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~ 335 (471)
T TIGR02119 258 RCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIP-DLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTV 335 (471)
T ss_pred HHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhcc-CCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 34445664 677888888776655554443322111 122 1113455666666676778888888888888888888
Q ss_pred hhhhcchhHHH
Q 007682 348 MGSILPQPRIL 358 (593)
Q Consensus 348 ~~~~~~~sR~l 358 (593)
.+.+.+.+-.+
T Consensus 336 ~s~l~~~ss~~ 346 (471)
T TIGR02119 336 NSLLLQSSSTI 346 (471)
T ss_pred HHHHHHHHHHH
Confidence 87777666554
No 66
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.45 E-value=0.0011 Score=70.76 Aligned_cols=299 Identities=12% Similarity=0.010 Sum_probs=159.4
Q ss_pred cccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCch-
Q 007682 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG- 127 (593)
Q Consensus 49 r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~- 127 (593)
|+++++-..+--+++..+.+.+......++.. |...++..+...+..++.+..+.+.-++.+ .-..++|.++-+|++
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAY-GFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCchH
Confidence 77888888888778888887777666655444 544333233333344556666666655544 346888999999984
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007682 128 VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (593)
Q Consensus 128 ~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~ 207 (593)
...+.+....+..+.+.+....+.+..++..++ .+.+.. ..+..++........|+|...+..
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g----i~~~~~-------------~ii~~~i~~~Yt~~GG~~av~~Td 143 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG----LDLYLS-------------LLLLGAITILYTVFGGLKAVVWTD 143 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----chHHHH-------------HHHHHHHHHHHHHHcchHHHHHHH
Confidence 556667777777777888888877777776663 222211 122222334455567888888877
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc--c-------ccCCCCC----CC-CCCCCC----chhHHHHHHHHHHHHHhhhhhh-H
Q 007682 208 AIVTTANVLAMLFVIIAGSYLG--F-------KTGWSGY----EL-PTGYFP----FGVNGMLAGSATVFFAFIGFDA-V 268 (593)
Q Consensus 208 ~~~~~~~li~~~~~~i~~~~~~--~-------~~~~~~~----~~-~~~~~p----~g~~~~~~~~~~~~~a~~G~e~-~ 268 (593)
.+=..++++..+++.+..+.+. . .+..... .. .....+ ..+.-.+.+.......+ +.+. .
T Consensus 144 ~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~ 222 (407)
T TIGR00813 144 TIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWY-WTNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHH-hcCHHH
Confidence 6666665554444333332210 0 0000000 00 000001 01100011111111111 1110 0
Q ss_pred hhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHH---HHhhcc----CCC----CCCCChHHHHHHHcchhHHHHHHHH
Q 007682 269 ASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIV---IVGLVP----YYE----MDPDTPISSAFASHGMHWASYVITI 337 (593)
Q Consensus 269 a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~---l~~~~p----~~~----l~~~~~~~~~~~~~g~~~~~~iv~i 337 (593)
..-.=-.|| +|+..|+...+.+.....+.+..+. .....+ ..+ .+++..+.....+...+|..-++.+
T Consensus 223 ~qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~a 301 (407)
T TIGR00813 223 VQRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLA 301 (407)
T ss_pred hhHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHH
Confidence 111122254 3677888888766655544332221 111222 111 1345566667777778888888888
Q ss_pred HHHHHHHHHHhhhhcchhHHHHHHHhcCCCc
Q 007682 338 GAVTALCSTLMGSILPQPRILMAMARDGLLP 368 (593)
Q Consensus 338 ~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP 368 (593)
+.+.+..++..+.+.+.+-.+...-.++.++
T Consensus 302 gilaA~mST~~s~l~a~ss~~~~Di~~~~~~ 332 (407)
T TIGR00813 302 AILAAVMSTLSSQLNSASTVFTMDLYKKIIR 332 (407)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 8888888888888877776654443333333
No 67
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.45 E-value=0.0038 Score=66.12 Aligned_cols=329 Identities=16% Similarity=0.120 Sum_probs=174.4
Q ss_pred cccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhcc-Ch-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHH
Q 007682 45 QKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHS-GP-ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYI 122 (593)
Q Consensus 45 ~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~-G~-~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~ 122 (593)
++.+|+.++++.+.+=.+...-.+.|...+... +.+ ++ .++++.+++-++........+..++++.- +.-.-.|.
T Consensus 35 ~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~-~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~Ra 111 (497)
T COG1953 35 PAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLF-ELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSRA 111 (497)
T ss_pred ccccCcchHHHHHHHHHHhhccHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHHH
Confidence 345689999999988666665555555555422 322 23 37777777777666666655555555543 24456778
Q ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhc---cCCCCccchhHHHHHHHHHHHHH-HHH
Q 007682 123 CVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQ---QIPGLGIIVDPCAAILVLIVTGL-LCV 198 (593)
Q Consensus 123 ~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~l-~~~ 198 (593)
.||.+-+-+-...-.+.-+.+.+..+...+..+..++.... |...... +..+.+.. .++++++++.+..+ ...
T Consensus 112 SFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~--~~~~~~~~~~~~lg~tt~-~~i~F~ifW~l~~l~~~~ 188 (497)
T COG1953 112 SFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIF--PSLLIPNTLSPLLGLTTL-ELICFFIFWVLQLLVLFK 188 (497)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhc--cccccCCccccccCCcHH-HHHHHHHHHHHHHHHHhc
Confidence 88888777777776666666666666666666655553222 1111111 11222222 23455666655544 457
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC--CCCchhHHHHHHHHHHHHHh-hhhhhHhhhhhhh
Q 007682 199 GIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTG--YFPFGVNGMLAGSATVFFAF-IGFDAVASTAEEV 275 (593)
Q Consensus 199 G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~--~~p~g~~~~~~~~~~~~~a~-~G~e~~a~~~~E~ 275 (593)
|++..+|+..+...+..+..+.+.+....++...+.. .+.+.+ -.+..+..++.++..+.-.+ +..-.++..+.+.
T Consensus 189 g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~-~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa 267 (497)
T COG1953 189 GMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSIL-GELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFA 267 (497)
T ss_pred CHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCcc-ccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhccc
Confidence 9999999999999999888888888776654332111 111111 11222333444443332211 3444566777777
Q ss_pred hCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCChHHHHHHHcchhHHHH-HHHHHHHHHHHH-HHhhhhc
Q 007682 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPY-YEMDPDTPISSAFASHGMHWASY-VITIGAVTALCS-TLMGSIL 352 (593)
Q Consensus 276 k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~-~~l~~~~~~~~~~~~~g~~~~~~-iv~i~~~~~~~~-s~~~~~~ 352 (593)
|+|+ +.-++-++++-+...++.+..++++...-. ...+..+|. ++..+...+.... +..+..+++..+ ++.+...
T Consensus 268 ~s~~-~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~-di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~v 345 (497)
T COG1953 268 KSQK-AQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPL-DIVARFLSGFYAAFLAGLTFAVATISTNIAANIV 345 (497)
T ss_pred CChh-hhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHH-HHHHHhccchHHHHHHHHHHHHHHHhhhHHhccC
Confidence 8764 344555556666665555555544443210 000111232 4455554332222 444444444444 3444444
Q ss_pred chhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHH
Q 007682 353 PQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAAL 395 (593)
Q Consensus 353 ~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il 395 (593)
++.--+.+ .+||.... | ++-++..+++.++
T Consensus 346 sp~~D~s~-----l~Pk~in~--k------rg~liaA~ial~~ 375 (497)
T COG1953 346 SPGYDLSA-----LFPKYINI--K------RGGLIAAIIALLI 375 (497)
T ss_pred ChHHHHHH-----hcccccch--h------hhHHHHHHHHHHH
Confidence 44433332 45654442 2 3556666666554
No 68
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.41 E-value=0.0034 Score=68.62 Aligned_cols=327 Identities=15% Similarity=0.123 Sum_probs=160.0
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHH---HHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFL---IAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~i---i~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
.|++++|-..+--+++..+.+.+......++.. |.+ .+.+.. ...+.....+.-+.+++++.. .=..++|.++-
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKY-GLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN-AVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 478898877777777777777666655444433 443 222111 111111223333455555543 34577888888
Q ss_pred hCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHH
Q 007682 124 VGEG-VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKE 202 (593)
Q Consensus 124 lG~~-~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~ 202 (593)
+|++ ...+.+....+..+.+.+....+.+..++..++ .+.... +.+..++.+......|+|.
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g----i~~~~~-------------iii~~~iv~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG----ISYETG-------------LLIFGITVALYTAFGGFRA 180 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHHhccHHH
Confidence 8865 455666656665566666666676767766653 121110 1122223344555678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc--ccc---CCC--CCCCCCCCCCc---hhHHHHHHHHHHHHHhhhhhhHhhhh
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLG--FKT---GWS--GYELPTGYFPF---GVNGMLAGSATVFFAFIGFDAVASTA 272 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~--~~~---~~~--~~~~~~~~~p~---g~~~~~~~~~~~~~a~~G~e~~a~~~ 272 (593)
..+...+-..++++..+++........ ... ... ..+..+...+. .+..+............+......-.
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 260 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRC 260 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 887776666666655544433332210 000 000 00000000011 11111111111112222322222222
Q ss_pred hhhhCCCCChhHHHHHHHHHHHHHHHHHHHHH---HhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhh
Q 007682 273 EEVKNPQRDLPLGIGTALSICCALYMLVSIVI---VGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMG 349 (593)
Q Consensus 273 ~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l---~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~ 349 (593)
=..||+ |+..|+.+++.+....+++...+.- ....|. ..+++..++....+...+|+..++..+.+.+..++..+
T Consensus 261 ~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s 338 (483)
T PRK09442 261 MSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDS 338 (483)
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 225664 5677887777666555544333221 112332 12345566677777778888888888888888887777
Q ss_pred hhcchhHHHHHHHhcCCCcccccccccc--cccchHHHHHHHHHHHHHHH
Q 007682 350 SILPQPRILMAMARDGLLPPFFSDVNKT--TQVPVKSTIVTGIVAAALAF 397 (593)
Q Consensus 350 ~~~~~sR~l~ama~dg~lP~~~~~~n~~--~~~P~~a~~~~~~l~~il~~ 397 (593)
.+.+.+-.+-..-.++..|+ ++.++| ..+-+.++++.++++.++++
T Consensus 339 ~l~~~ss~~~~Di~~~~~~~--~~~s~~~~~~v~r~~~~~~~~~~~~~a~ 386 (483)
T PRK09442 339 QLLQSSSTIIKDLYLNIRPD--QIANEKKLKRISLIITLILGLLVLLAAL 386 (483)
T ss_pred HHHHHHHHHHHHHHHHhccC--CCCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77665544322211123332 112222 12334455555666655553
No 69
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.35 E-value=0.00072 Score=70.58 Aligned_cols=293 Identities=15% Similarity=0.155 Sum_probs=149.8
Q ss_pred ChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHH-HHHHHHHHHHHHHHhhhccCC-CccccchHHHhCchHH
Q 007682 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIA-GIASAFSAFCYAELASRCPSA-GSAYHYSYICVGEGVA 129 (593)
Q Consensus 52 ~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~-~l~~l~~al~~ael~s~~p~~-GG~y~~~~~~lG~~~g 129 (593)
|-..-++-++|+.+|.|..-.-+..+.+++|..-++-|+++ .+..++..+.---++++..++ =+.|.-... ++++
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~--~~~~- 86 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP--KKKW- 86 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc--Cccc-
Confidence 33455666789999999777777777788888755555553 335666555555555555432 122222221 2333
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHH-HHHH-HHHccCCC----hhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhH
Q 007682 130 WLIGWALILEYTIGGSA--VARGIS-PNLA-MLFGSADS----LPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK 201 (593)
Q Consensus 130 ~~~gw~~~~~~~~~~a~--~~~~~~-~~i~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k 201 (593)
...||.-.+......+. +..++. .|+- +..+...+ ......+. ...+...-..-..++++...+..+|++
T Consensus 87 ~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~lt~~iv~~GV~ 164 (439)
T COG0733 87 EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQT--ISNPGLAVIFHLLFLVLTALIVSRGVK 164 (439)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444422222222221 122221 2222 22222210 11111111 111121222335555566677778986
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCCCCCCCCCCch-hHHHHHHHHHHHHHh-hhhhhHhhhhhhhhC
Q 007682 202 E-STIAQAIVTTANVLAMLFVIIAGSYLGF-KTGWSGYELPTGYFPFG-VNGMLAGSATVFFAF-IGFDAVASTAEEVKN 277 (593)
Q Consensus 202 ~-~~~i~~~~~~~~li~~~~~~i~~~~~~~-~~~~~~~~~~~~~~p~g-~~~~~~~~~~~~~a~-~G~e~~a~~~~E~k~ 277 (593)
. ..|.+++++....+.++++.+-.+.... ..+....-. +++.... ...+..+....+|+. .|+....+++.-.++
T Consensus 165 ~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~-PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k 243 (439)
T COG0733 165 KGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFK-PDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK 243 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhc-CCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 5 8889999888888887777665543210 000000000 1111111 344666777888887 688888888888876
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC-------ChHHHHHHHcch-hHHHHHHHHHHHHHHHHHHhh
Q 007682 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPD-------TPISSAFASHGM-HWASYVITIGAVTALCSTLMG 349 (593)
Q Consensus 278 P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~-------~~~~~~~~~~g~-~~~~~iv~i~~~~~~~~s~~~ 349 (593)
+.|+++.-......-...-++..+++....-....+++ ..++++|.+.+. .....+.....+++.++|.++
T Consensus 244 -~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 244 -KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred -ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 67888887776666665555554444332222112122 245778888862 233334444444555555544
Q ss_pred hh
Q 007682 350 SI 351 (593)
Q Consensus 350 ~~ 351 (593)
.+
T Consensus 323 ml 324 (439)
T COG0733 323 ML 324 (439)
T ss_pred HH
Confidence 33
No 70
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.31 E-value=0.0013 Score=69.40 Aligned_cols=332 Identities=15% Similarity=0.096 Sum_probs=167.7
Q ss_pred HHhhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHHHHHH
Q 007682 59 IGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWA 135 (593)
Q Consensus 59 l~i~~~iG~G~~~~~~~v~~~~~G~~---~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~gw~ 135 (593)
+-++.-.|+|....+..+. ..+|.. +.+++++.++..=+.+.. +. -+.||.+.=..+-.||+.|.+..-.
T Consensus 11 ~LFamFFGAGNLIFPp~lG-~~aG~~~~~a~~GF~lTgV~lP~Lgvi-----a~-~~~~~~~~~l~~~v~~~f~~if~~~ 83 (427)
T PF05525_consen 11 ALFAMFFGAGNLIFPPFLG-QQAGSNWWPAMIGFLLTGVGLPLLGVI-----AV-AKSGGGIEDLASRVGPKFALIFTIL 83 (427)
T ss_pred HHHHHHhCCccccchHHHH-HHhcchHHHHHHHHHHHHHHHHHHHHH-----HH-hhcCCCHHHHhcccCcHHHHHHHHH
Confidence 3345578999999998865 456665 444455544422222211 11 1234333333444677777655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 007682 136 LILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANV 215 (593)
Q Consensus 136 ~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~l 215 (593)
..+.--.. -+..|..+......+. | .... .......++.+++..+...+..+.-|...++.++++.+.+
T Consensus 84 i~l~IGP~-~aiPRtaa~sfe~~i~-----p-~~~~----~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL 152 (427)
T PF05525_consen 84 IYLSIGPL-FAIPRTAAVSFEMGIA-----P-FFPE----NSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILL 152 (427)
T ss_pred HHHHHHhc-ccCcchhhhhHHHhhh-----c-cCCc----ccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 22211110 1222322222221110 0 0000 0111222457777778888888888999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCC-CCCCCCCchh-HHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHH
Q 007682 216 LAMLFVIIAGSYLGFKTGWSGYE-LPTGYFPFGV-NGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSIC 293 (593)
Q Consensus 216 i~~~~~~i~~~~~~~~~~~~~~~-~~~~~~p~g~-~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~ 293 (593)
+.++++++.++.....+.....+ ..+..+..|+ .|+-..=..+...|...=..+--....+|+ |+..|.+..+-++.
T Consensus 153 ~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia 231 (427)
T PF05525_consen 153 ILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIA 231 (427)
T ss_pred HHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHH
Confidence 99999999888753322111100 0011111111 111111112223333322223333333443 44555555555444
Q ss_pred H----HHHHHHHHHHHhhccC--CCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCC
Q 007682 294 C----ALYMLVSIVIVGLVPY--YEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLL 367 (593)
Q Consensus 294 ~----~~y~~~~~~l~~~~p~--~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~l 367 (593)
+ ++|......=...... ++.+....+.++.++..|+.+..+..+....+++++.++...+.+..+...
T Consensus 232 ~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~------ 305 (427)
T PF05525_consen 232 GILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL------ 305 (427)
T ss_pred HHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4 4444444332222221 112223455667777788889999999999999999999988888876554
Q ss_pred cccccccccccccchHHH-HHHHHHHHHHHHhhCHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 007682 368 PPFFSDVNKTTQVPVKST-IVTGIVAAALAFFMDVSALAGMV----SVGTLLAFTMVAISVLI 425 (593)
Q Consensus 368 P~~~~~~n~~~~~P~~a~-~~~~~l~~il~~~~~~~~l~~l~----si~~l~~y~l~~~~~l~ 425 (593)
.+ +.+++.. ++..+++.++. ...+++++... .+.++.+..++.+.++.
T Consensus 306 -------~~--kisY~~~v~i~~i~S~~ia-n~Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~ 358 (427)
T PF05525_consen 306 -------FP--KISYKVWVIIFTIFSFIIA-NLGLDQIIKISVPILMFIYPVAIVLILLNLFD 358 (427)
T ss_pred -------hc--ccChHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 2444433 33444444433 34566655544 34445554555444443
No 71
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.28 E-value=0.0015 Score=68.54 Aligned_cols=254 Identities=20% Similarity=0.288 Sum_probs=124.9
Q ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCccccchHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007682 78 REHSGPALALSFLIAGIASAFSAFCYAELASRCPS--AGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNL 155 (593)
Q Consensus 78 ~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~--~GG~y~~~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i 155 (593)
...-|....|..+++. +..+.+-|++.|+-. .-+...-.++-+|+.+++.......+...........+.+..+
T Consensus 8 GA~~Gy~Llw~lll~~----~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al 83 (358)
T PF01566_consen 8 GAQYGYSLLWVLLLSN----LLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIAL 83 (358)
T ss_pred HHHHCHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666655555444 444555666666652 3356666678888988887777766666666555555554444
Q ss_pred HHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 007682 156 AMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL---CVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT 232 (593)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~---~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~ 232 (593)
..+++ .|... ...+..+.+..+. ..+.|...++..++..++.+.++...+.. +.
T Consensus 84 ~ll~g----~~~~~--------------~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~-----~p 140 (358)
T PF01566_consen 84 NLLFG----IPLWI--------------WVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIV-----HP 140 (358)
T ss_pred HhhcC----CCcHH--------------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhc-----ch
Confidence 43331 12111 1222222222222 34556666666666655544443332221 11
Q ss_pred CCCCCCCCCCCC-Cch--hHHHHHHHHHHHHHhhhhhhHh--hhhhh-------------hhCCCCChhHHHHHHHHHHH
Q 007682 233 GWSGYELPTGYF-PFG--VNGMLAGSATVFFAFIGFDAVA--STAEE-------------VKNPQRDLPLGIGTALSICC 294 (593)
Q Consensus 233 ~~~~~~~~~~~~-p~g--~~~~~~~~~~~~~a~~G~e~~a--~~~~E-------------~k~P~r~ip~ai~~~~~i~~ 294 (593)
+|... ..++. |.- ..++...++..-.....++... +...| .|.-++|.-.++..+.++..
T Consensus 141 ~~~~~--~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ 218 (358)
T PF01566_consen 141 DWGEV--ARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINV 218 (358)
T ss_pred hHHHH--hhhccCCCCcchhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12111 01111 210 1222222222222222222221 11112 12222222233333333333
Q ss_pred HHHHHHHHHHHhhccCCCCCCCChHHHHHHHcch-hHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007682 295 ALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGM-HWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 295 ~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~-~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama 362 (593)
.+++..+..+. -+..+.+..+...++++...| +|..+++.++.+.+.+++..+...+.++.+.+.-
T Consensus 219 ai~i~~A~~l~--~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 219 AILIVAAAVLY--PGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHHHHHhc--ccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 33222222222 111123333466778888777 7999999999999999999999998888876653
No 72
>PRK11017 codB cytosine permease; Provisional
Probab=98.28 E-value=0.0096 Score=63.44 Aligned_cols=220 Identities=16% Similarity=0.063 Sum_probs=115.3
Q ss_pred cccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchH
Q 007682 49 KNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGV 128 (593)
Q Consensus 49 r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~ 128 (593)
|+ ++++....-++..+....+...+.+.....=..++++.+++.++........+-.+.++-. +.+...|..||.+-
T Consensus 9 r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G~--~~~v~sR~~FG~~G 85 (404)
T PRK11017 9 RK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTGL--STHLLARFSFGEKG 85 (404)
T ss_pred hc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CHHHHHHHHhchhH
Confidence 55 8888766665555544444444443322222236666666655555444455555554433 36668888899998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 007682 129 AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQA 208 (593)
Q Consensus 129 g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~ 208 (593)
+.+.+....+..+.+.+......+..+...++ .+. ....+++.++.+.....|.|...++++
T Consensus 86 s~l~~~~~~i~~igW~av~~~~~~~~l~~~~~----~~~--------------~~~~~i~~~l~~~~~~~G~~~i~~~~~ 147 (404)
T PRK11017 86 SWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG----LDI--------------NLLIVLSGLLMTVTAYFGISALTILSR 147 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC----CCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777666666555444443333321 010 011233344455566789999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHH-HHhhhhhhHhhhhhhhhCCCCChhHHHH
Q 007682 209 IVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVF-FAFIGFDAVASTAEEVKNPQRDLPLGIG 287 (593)
Q Consensus 209 ~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~-~a~~G~e~~a~~~~E~k~P~r~ip~ai~ 287 (593)
+.....++..+...+..... .+++.......+..+ ..++.++...+ +-..+.-..+.++...|+|++.+ .+..
T Consensus 148 ~~~p~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~---~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~-~~~~ 221 (404)
T PRK11017 148 IAVPAIALLGGYSVWLAVND--VGGLDGLKAIVPAEP---LDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAV-LATM 221 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cCchhhhhcCCCCCc---ccHHHHHHHHHHHHHHhHhcCCChHhhccCcccee-ehhH
Confidence 88777766555444333221 111211111111111 22333333222 11344556677888888765443 4555
Q ss_pred HHHHHHHH
Q 007682 288 TALSICCA 295 (593)
Q Consensus 288 ~~~~i~~~ 295 (593)
.+..+...
T Consensus 222 lg~~i~~~ 229 (404)
T PRK11017 222 VAFFLGNS 229 (404)
T ss_pred HHHHHHHH
Confidence 54444333
No 73
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.05 E-value=0.016 Score=63.32 Aligned_cols=300 Identities=12% Similarity=0.036 Sum_probs=146.0
Q ss_pred ccccChHHHHHHHhhhh-hhhhHHHhHHHHHHhccChHHHHHHHHHHHH----HHHHHHHHHHHhhhccCCCccccchHH
Q 007682 48 AKNLTIPHLVAIGVGST-IGAGVYILVGTVAREHSGPALALSFLIAGIA----SAFSAFCYAELASRCPSAGSAYHYSYI 122 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~-iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~----~l~~al~~ael~s~~p~~GG~y~~~~~ 122 (593)
.|+++++ ..+++.+.. .+...+...+..++ ..|....+..+...+. ....+--..+++ +.++.-..++|.++
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay-~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAY-ASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEA 113 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHH
Confidence 4788988 666655544 33233333333343 3455544433332223 333333444444 33445678899999
Q ss_pred HhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhH
Q 007682 123 CVG-EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIK 201 (593)
Q Consensus 123 ~lG-~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k 201 (593)
=+| +....+.+....+..+.+.+....+.+..++..++ .. .... ...+...+.......|.|
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~---~~~~-------------~~~~~~~v~~Yt~~gG~~ 176 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS---YVTG-------------ILIGALIVALYTFLGGLR 176 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC---HHHH-------------HHHHHHHHHHHHHHcChh
Confidence 999 88888899999999999999998888887765554 21 1110 112222333334445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh--c------cccCCCCCC-CCCCCCCchhHHHHH---HHHHHHHHhhhhhhHh
Q 007682 202 ESTIAQAIVTTANVLAMLFVIIAGSYL--G------FKTGWSGYE-LPTGYFPFGVNGMLA---GSATVFFAFIGFDAVA 269 (593)
Q Consensus 202 ~~~~i~~~~~~~~li~~~~~~i~~~~~--~------~~~~~~~~~-~~~~~~p~g~~~~~~---~~~~~~~a~~G~e~~a 269 (593)
...+...+=+.++++.+..+.+..... + ..+...... ......+..+..... .....+..+..-....
T Consensus 177 av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 256 (493)
T COG0591 177 AVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILP 256 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhh
Confidence 555544433444443333332222221 0 000110000 000000112222222 1112233344444444
Q ss_pred hhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHH-----HHhhccCC-----CCCCCChHHHHHHHcchhHHHHHHHHHH
Q 007682 270 STAEEVKNPQRDLPLGIGTALSICCALYMLVSIV-----IVGLVPYY-----EMDPDTPISSAFASHGMHWASYVITIGA 339 (593)
Q Consensus 270 ~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~-----l~~~~p~~-----~l~~~~~~~~~~~~~g~~~~~~iv~i~~ 339 (593)
..-. .|+++| .||.+......-.+.++...++ ........ +.+.+..+.........+|..-++...+
T Consensus 257 r~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ai 334 (493)
T COG0591 257 RFMA-AKSIKS-LPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAI 334 (493)
T ss_pred hhhh-hccHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 4444 444433 3434333333333333332222 22212111 1244455666777778888888888888
Q ss_pred HHHHHHHHhhhhcchhHHHHHHHhcCCCcc
Q 007682 340 VTALCSTLMGSILPQPRILMAMARDGLLPP 369 (593)
Q Consensus 340 ~~~~~~s~~~~~~~~sR~l~ama~dg~lP~ 369 (593)
+.+..++..+.+...+-.+-..-.++..++
T Consensus 335 laAvmSt~ss~ll~~ss~~t~Diyk~~~~~ 364 (493)
T COG0591 335 LAAVMSTASSQLLVASSAITRDIYKRFLRK 364 (493)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhCC
Confidence 887777777777666655444333344443
No 74
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.04 E-value=0.0058 Score=64.62 Aligned_cols=220 Identities=11% Similarity=0.036 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC--CC--chhH-H--HHHHH
Q 007682 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGY--FP--FGVN-G--MLAGS 255 (593)
Q Consensus 183 ~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~--~p--~g~~-~--~~~~~ 255 (593)
++++++..+...+..+.-|...++.++++.+.++.++++++.++.+...+ .... .+.+ .| .|+. | .+=++
T Consensus 124 ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~-~~~~--~~~y~~~~f~~Gf~eGY~TMDal 200 (439)
T PRK15433 124 IYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGS-ISTA--TEAYQNAAFSNGFVNGYLTMDTL 200 (439)
T ss_pred HHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCc--chhhhhhhHHHHHHhhHHHHHHH
Confidence 46777888888888888899999999999999999999998888753221 1100 0111 11 1211 1 12222
Q ss_pred HHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHH----HHHHHHHHHHHHHhhccCC-CCCCCC-hHHHHHHHcchh
Q 007682 256 ATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSI----CCALYMLVSIVIVGLVPYY-EMDPDT-PISSAFASHGMH 329 (593)
Q Consensus 256 ~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i----~~~~y~~~~~~l~~~~p~~-~l~~~~-~~~~~~~~~g~~ 329 (593)
+...|+ ..=..+--....+|+ |++.|.++.+-++ -.++|......=....+.. +.++.. -.....++..++
T Consensus 201 aal~Fg--~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~ 277 (439)
T PRK15433 201 GAMVFG--IVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGG 277 (439)
T ss_pred HHHHHH--HHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCH
Confidence 222332 222222223335554 3445544444444 4445555444333222211 111222 233455566788
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchH-HHHHHHHHHHHHHHhhCHHH----H
Q 007682 330 WASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVK-STIVTGIVAAALAFFMDVSA----L 404 (593)
Q Consensus 330 ~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~-a~~~~~~l~~il~~~~~~~~----l 404 (593)
++..+..+....+++++.++...+.++.+...- ..|++ ...+..+++.++.- ..+++ .
T Consensus 278 ~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~----------------~isY~~~v~i~~l~S~~lSn-~G~~~II~~s 340 (439)
T PRK15433 278 GGSFLLAALIFIACLVTAVGLTCACAEFFAQYV----------------PLSYRTLVFILGGFSMVVSN-LGLSQLIQIS 340 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------CCcHHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 999999999999999999998888877643321 13333 33333444444332 23444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007682 405 AGMVSVGTLLAFTMVAISVLI 425 (593)
Q Consensus 405 ~~l~si~~l~~y~l~~~~~l~ 425 (593)
..+..+.++.+..++.++++.
T Consensus 341 ~PiL~~iYP~~IvLill~l~~ 361 (439)
T PRK15433 341 VPVLTAIYPPCIALVVLSFTR 361 (439)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 445556666666666655554
No 75
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.87 E-value=0.069 Score=58.45 Aligned_cols=289 Identities=11% Similarity=0.038 Sum_probs=132.0
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCccccchHHH
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCP----SAGSAYHYSYIC 123 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p----~~GG~y~~~~~~ 123 (593)
.|+++++-..+--.++..+...+......+.. .|....+..+-..+..++..+.++.--.++. +.-..++|.++=
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~-~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~R 113 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYV-TGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENR 113 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHH
Confidence 47888887765555555555544433322332 3554332221111222223333333322221 123467888888
Q ss_pred hCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhh
Q 007682 124 VGE---GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (593)
Q Consensus 124 lG~---~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~ 200 (593)
+|+ ....+.+....+....+.+....+.+..++..++ .+.+.. +.+..++.+......|+
T Consensus 114 yg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g----i~~~~~-------------iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 114 FNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG----LDYKTG-------------LLIGALIIVIYTFFGGF 176 (487)
T ss_pred hCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccHHHH-------------HHHHHHHHHHHHHhhhH
Confidence 884 3444444444444555556666666666665553 121110 12222334455566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC---------CCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhh
Q 007682 201 KESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWS---------GYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVAST 271 (593)
Q Consensus 201 k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~---------~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~ 271 (593)
|...+...+=..++++..+++.+..+... .++. ..+..+...+..+..+...+... ..+.|......-
T Consensus 177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~~~--GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~p~~~qR 253 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFALVLVPIVALFNL--GGFGETLSAVAAINPHLLDMFKGASVIAIISLLAWG-LGYFGQPHIIVR 253 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHHH-HHhccchHHHHH
Confidence 88877766666565555443333332211 1110 00000101111222222221111 111222111111
Q ss_pred hhhhhCCCCChhHHHHHHHHHHHHHHHHHH---HHHHhhccCC-C---CCCCChHHHHHHHcchhHHHHHHHHHHHHHHH
Q 007682 272 AEEVKNPQRDLPLGIGTALSICCALYMLVS---IVIVGLVPYY-E---MDPDTPISSAFASHGMHWASYVITIGAVTALC 344 (593)
Q Consensus 272 ~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~---~~l~~~~p~~-~---l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~ 344 (593)
.=-.||+ |+..|+...+.......++... +.-....+.+ + .+++..++...++...+|..-++..+.+.+..
T Consensus 254 ~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~m 332 (487)
T TIGR02121 254 FMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIM 332 (487)
T ss_pred HHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 1123443 5677777666443322211111 1111112221 1 12344455556666778888888888888888
Q ss_pred HHHhhhhcchhHHH
Q 007682 345 STLMGSILPQPRIL 358 (593)
Q Consensus 345 ~s~~~~~~~~sR~l 358 (593)
++..+.+.+.+-.+
T Consensus 333 ST~~s~l~s~ss~~ 346 (487)
T TIGR02121 333 STISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776554
No 76
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.85 E-value=0.031 Score=60.01 Aligned_cols=76 Identities=13% Similarity=0.118 Sum_probs=43.6
Q ss_pred hhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CC-ccccchHHHhCchHHHHHHHHHHHHHH
Q 007682 64 TIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPS-AG-SAYHYSYICVGEGVAWLIGWALILEYT 141 (593)
Q Consensus 64 ~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~-~G-G~y~~~~~~lG~~~g~~~gw~~~~~~~ 141 (593)
-+|.|-+..... +...-|....|..+++.+ ....+-|++.|.-. +| |...-.++-+|+.++++......+...
T Consensus 47 ~idpG~i~t~~~-aGA~~Gy~LLW~llls~~----~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~ 121 (439)
T PRK00701 47 YMDPGNWATNIQ-GGSQFGYTLLWVILLSNL----MAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIM 121 (439)
T ss_pred eecchHHHHHHH-HHHHHCHHHHHHHHHHHH----HHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 366665554443 334456666555544444 44555666666653 44 677888888898887755444433333
Q ss_pred HHH
Q 007682 142 IGG 144 (593)
Q Consensus 142 ~~~ 144 (593)
...
T Consensus 122 ~~~ 124 (439)
T PRK00701 122 ATD 124 (439)
T ss_pred HHH
Confidence 333
No 77
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=97.82 E-value=0.0017 Score=69.28 Aligned_cols=289 Identities=18% Similarity=0.128 Sum_probs=131.2
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCch
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~ 127 (593)
.|+++++-..+--+++.+|.+.+......+.. .|.+..+..+...+...+.++.++.--.+. +.-..++|.++-+|++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 37789888777777777888766665544443 355433333333333333444333333322 2346888999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 128 V--AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 128 ~--g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
. ..+.+....+..+.+.+....+.+..++..++ .+.... ..+..++........|+|...+
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g----i~~~~~-------------~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG----IPYNTA-------------ILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------HHHH-------------HHHHHHHHHHTTCTT------S
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc----hhhhHH-------------HHHHHHHHHHhhhhhhHhhhhH
Confidence 7 55665556666667777777777777766653 121110 1112222222334567787776
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc------------ccCCCCCCCCCCC--CCchhHHHHHHHHHHHHHhhhhhhHhhh
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGF------------KTGWSGYELPTGY--FPFGVNGMLAGSATVFFAFIGFDAVAST 271 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~------------~~~~~~~~~~~~~--~p~g~~~~~~~~~~~~~a~~G~e~~a~~ 271 (593)
...+-..++++..+++.+..+.... +++......+.+. ...........+ ... .|.....++
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~g~~~~p~~ 221 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWI-ALM---LGTFGAPHF 221 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TT-HHH---HSTHHH-HH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHH-HHH---hhhccchHH
Confidence 5555554444443333333221100 0000001111111 000010000001 111 122222333
Q ss_pred hhhh---hCCCCChhHHHHHHHHHHHHHHHH------HHHHHHhhccCC----CCCCCChHHHHHHHcchhHHHHHHHHH
Q 007682 272 AEEV---KNPQRDLPLGIGTALSICCALYML------VSIVIVGLVPYY----EMDPDTPISSAFASHGMHWASYVITIG 338 (593)
Q Consensus 272 ~~E~---k~P~r~ip~ai~~~~~i~~~~y~~------~~~~l~~~~p~~----~l~~~~~~~~~~~~~g~~~~~~iv~i~ 338 (593)
.... |++ |+..|+...+.....+++.. ....+....|.. ..+++..+.....+...+|..-++.++
T Consensus 222 ~qR~~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~ 300 (406)
T PF00474_consen 222 WQRFLAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAG 300 (406)
T ss_dssp HHHHHSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHH
T ss_pred HHHHHhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHH
Confidence 3333 443 56777777765444333333 111222222211 112334566667777778888888888
Q ss_pred HHHHHHHHHhhhhcchhHHHHH
Q 007682 339 AVTALCSTLMGSILPQPRILMA 360 (593)
Q Consensus 339 ~~~~~~~s~~~~~~~~sR~l~a 360 (593)
.+.+..++..+.+.+.+-.+..
T Consensus 301 ~~aA~~ST~~s~l~a~ss~~~~ 322 (406)
T PF00474_consen 301 ILAAIMSTADSLLLAISSIFSR 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhhhhhhH
Confidence 8888888888888777766433
No 78
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.81 E-value=0.09 Score=57.80 Aligned_cols=156 Identities=10% Similarity=-0.011 Sum_probs=80.9
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHH-HHh---hhccCCCccccchHHH
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYA-ELA---SRCPSAGSAYHYSYIC 123 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~a-el~---s~~p~~GG~y~~~~~~ 123 (593)
.|++++|-..+--.++.++...+......++ ..|....+..+-..+..++.....+ .+- .+-++.-..++|.++=
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y-~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~R 117 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVF-LSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGR 117 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHH
Confidence 4889999888777777787776665544343 3465543322211122121111111 111 1112223567788887
Q ss_pred hCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhh
Q 007682 124 VGE---GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (593)
Q Consensus 124 lG~---~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~ 200 (593)
+|+ ....+.+....+....+.+....+.+..+...++ .+... .+.+..++.+......|+
T Consensus 118 y~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g----i~~~~-------------~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 118 FEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG----MSYET-------------ALWAGAAATILYTFIGGF 180 (502)
T ss_pred hCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHH-------------HHHHHHHHHHHHHHhhhH
Confidence 874 3444555555555555666655555566655553 12111 012222334445566788
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 007682 201 KESTIAQAIVTTANVLAMLFV 221 (593)
Q Consensus 201 k~~~~i~~~~~~~~li~~~~~ 221 (593)
|...+...+=..++++..+++
T Consensus 181 ~aV~~TD~iQ~~imi~g~i~~ 201 (502)
T PRK15419 181 LAVSWTDTVQASLMIFALILT 201 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888777666666655544433
No 79
>PRK12488 acetate permease; Provisional
Probab=97.78 E-value=0.11 Score=57.81 Aligned_cols=154 Identities=16% Similarity=0.092 Sum_probs=87.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHHHhhhccCCCccccchHHHhC-
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAF-SAFCYAELASRCPSAGSAYHYSYICVG- 125 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~-~al~~ael~s~~p~~GG~y~~~~~~lG- 125 (593)
.|++++|...+.-.++.++++.+......++. .|...++ +.++.....+ ..+.+++--.+... =..++|.++=+|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 48899999988777877888777655544443 3554332 2233322222 23334443333322 245556666666
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
+....+++....+..+.+.+....+.+..+..+++ .+.+.. +-+..++........|+|...+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g----i~~~~~-------------iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG----ISYLYA-------------VVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHhccchhHHHH
Confidence 45777777777777777777777777766666653 121110 1122223333444578888887
Q ss_pred HHHHHHHHHHHHHHHH
Q 007682 206 AQAIVTTANVLAMLFV 221 (593)
Q Consensus 206 i~~~~~~~~li~~~~~ 221 (593)
.+.+=..++++..+++
T Consensus 206 td~iQ~~im~~~~i~~ 221 (549)
T PRK12488 206 VQIIKAVLLLSGTSFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766666666554444
No 80
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.78 E-value=0.078 Score=56.15 Aligned_cols=246 Identities=13% Similarity=0.015 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Q 007682 83 PALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSA 162 (593)
Q Consensus 83 ~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~ 162 (593)
..++++.+++-++........+..+.+... ......|..+|.+-+.+......+..+.+.+......++.+....+..
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~ 106 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRL 106 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666666655555544455555555443 367788999999999999988888888888888777777777665321
Q ss_pred CChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 007682 163 DSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTG 242 (593)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~ 242 (593)
. +. .... ....++.++.......|.|..++++++...+..+..+........+.. .....++++
T Consensus 107 ~--~~---------~~~~--~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~ 170 (386)
T TIGR02358 107 F--GE---------ESPM--LWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKAD---LSELWNRAG 170 (386)
T ss_pred c--CC---------CchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhhcCCCC
Confidence 1 10 0000 112223334555667899999999998888777776655544333221 111111111
Q ss_pred CCCchhHHHHHHHHHHHHH-hhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHH
Q 007682 243 YFPFGVNGMLAGSATVFFA-FIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISS 321 (593)
Q Consensus 243 ~~p~g~~~~~~~~~~~~~a-~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~ 321 (593)
. . ++..++....-. -.+.-..+.++...|+|+| .-++...+..+...+..+.........+. .++. +
T Consensus 171 ~--~---s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~-~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~-~ 238 (386)
T TIGR02358 171 D--M---SFAVAVELVIAMPLSWLPLIADYTRFARNPRH-VFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII-S 238 (386)
T ss_pred C--c---cHHHHHHHHHHHHHHHHHHccchhhhcCCCcc-eehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-H
Confidence 1 1 122222221111 1222336777777787654 45666666666666655555555444432 2333 3
Q ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007682 322 AFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (593)
Q Consensus 322 ~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~am 361 (593)
.....+.. .+..+..+++..++.....++.+--+.++
T Consensus 239 ~~~~~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l~~l 275 (386)
T TIGR02358 239 ILAGAGLG---IPALLIILLSTVTTTFMDIYSAAISTGNL 275 (386)
T ss_pred HHHhccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34333322 22333344444444444444444444443
No 81
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.72 E-value=0.074 Score=55.16 Aligned_cols=284 Identities=17% Similarity=0.062 Sum_probs=146.4
Q ss_pred hHHHHHHHhhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHH
Q 007682 53 IPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (593)
Q Consensus 53 ~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~---~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g 129 (593)
.+-.-+|-++.-.|+|....+.... ..+|.. +.+++++.++.-=+.+..- .-+.||.+.=..+-.||..|
T Consensus 7 ~~~~GfmLFalFFGAGNlIFPP~LG-~~aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg 79 (431)
T COG1114 7 IIALGFMLFALFFGAGNLIFPPMLG-LHAGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFG 79 (431)
T ss_pred HHHHHHHHHHHHhcCCCccCChhhh-hhcCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHH
Confidence 3445555566678999888888755 455665 4555555554322222211 11234433333344567766
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHH
Q 007682 130 WLIGWALILEYTIGGSA--VARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQ 207 (593)
Q Consensus 130 ~~~gw~~~~~~~~~~a~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~ 207 (593)
.+..-...+ ..... ..|..+......+ .+........+..+++++...+...+.+..-|...++.
T Consensus 80 ~~f~~~iyL---sIGPffAiPRt~~vsfe~~i----------~p~~~~~~~~~l~ifs~ifF~ia~~~sl~psklid~vG 146 (431)
T COG1114 80 VLFAIAIYL---SIGPFFAIPRTGAVSFEVGI----------SPLLGDSSLPSLFIFSVIFFAIAYLFSLNPSKLIDRVG 146 (431)
T ss_pred HHHHHHHHH---HhcccccCCcccchhHHHhh----------hcccCCCcchHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 543322221 11111 1111111111111 00000112222335678888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCC--CCCCCCCCCCCchh-HHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhH
Q 007682 208 AIVTTANVLAMLFVIIAGSYLGFKTGW--SGYELPTGYFPFGV-NGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPL 284 (593)
Q Consensus 208 ~~~~~~~li~~~~~~i~~~~~~~~~~~--~~~~~~~~~~p~g~-~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ 284 (593)
++++.++++.++++.+..+......-. +....+.++. .|+ .|+...=..+..+|...-..+--....+++ |++.|
T Consensus 147 k~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~-~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~ 224 (431)
T COG1114 147 KFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFS-KGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIK 224 (431)
T ss_pred HHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHH
Confidence 999999999988888876553221110 0000011111 122 233322223444554443334333444443 46666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCC--C---CCCC-hHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007682 285 GIGTALSICCALYMLVSIVIVGLVPYYE--M---DPDT-PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (593)
Q Consensus 285 ai~~~~~i~~~~y~~~~~~l~~~~p~~~--l---~~~~-~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (593)
..+.+-++..+.-.+.-..+..+.+..+ . ++.. -+.++-++..|+.+..+..+....+++++..+...+.+...
T Consensus 225 ~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF 304 (431)
T COG1114 225 YTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFF 304 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655544444444443332211 1 1111 22334445567778889999999999999888887777664
No 82
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.68 E-value=0.15 Score=56.61 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=79.9
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHHHhhhccCCCccccchHHHhC-
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASA-FSAFCYAELASRCPSAGSAYHYSYICVG- 125 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l-~~al~~ael~s~~p~~GG~y~~~~~~lG- 125 (593)
.|++++|....--.++.++...+......+.. .|...++.. ++..... ...+.+++--++..+ =-.++|.++=+|
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCC
Confidence 57899987655555666666655554443433 355433322 2333222 333444554443322 124445555565
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 126 EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 126 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
+....+++....+..+.+.+....+.+..++.+++ .+.+.. +.+..++........|+|...+
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g----i~~~~~-------------iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG----LNYHVA-------------VVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhhHHHHH
Confidence 44555666666655566666666666666665553 122110 1222223344555678888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 007682 206 AQAIVTTANVLAMLFV 221 (593)
Q Consensus 206 i~~~~~~~~li~~~~~ 221 (593)
.+.+=..++++..+++
T Consensus 206 td~iQ~~im~~g~i~~ 221 (549)
T TIGR02711 206 VQIIKAVLLLFGATFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7766666665554443
No 83
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=97.67 E-value=0.022 Score=60.32 Aligned_cols=247 Identities=12% Similarity=0.058 Sum_probs=126.7
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCc
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~ 126 (593)
+++-+.+..+.--..++.|+|++..+.. ....|.. .+....+.+++......++.+.+.+.++. ....-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~a--fk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYA--FKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHH--HHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 3556778888888889999999998874 4566754 44445556667777777888888887765 333344455554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC---hhhhhhhccCCCCccc-hhHHHHHHHHHHHHHHHHhhHH
Q 007682 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADS---LPFFMARQQIPGLGII-VDPCAAILVLIVTGLLCVGIKE 202 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~l~~~G~k~ 202 (593)
.-.....-... .+..+ ..+..-+++..++.... ..++...+ -..... +-+....++.-++.. +.+..
T Consensus 80 ~g~~~~~v~~~-~~~~g----~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~--k~l~~ 150 (411)
T KOG1305|consen 80 LGKVDAAVAVK-CFGVG----MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLL--KNLDS 150 (411)
T ss_pred CceeeehhhHH-hhhcc----ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHH--Hhhhh
Confidence 43111110000 00000 00000011111110000 00000000 001111 111122222222222 22222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchh--HHHHHHHHHHHHHhhhhhhHhhhhhhhhCCC-
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGV--NGMLAGSATVFFAFIGFDAVASTAEEVKNPQ- 279 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~--~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~- 279 (593)
. +.....+....+.++.+.+.-.......... .....|... .+++.++....++|...+..-..-+|+|||+
T Consensus 151 L-k~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 151 L-KYTSALSLASVVYFVVLVVYKYFQGPCALGR----LSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhcccccCC----cccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 2 2233333333333333322222211110000 011222222 5688899999999999999999999999997
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 007682 280 RDLPLGIGTALSICCALYMLVSIVIVGLVPYY 311 (593)
Q Consensus 280 r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~ 311 (593)
|.+-+....+...+..+|......-...++..
T Consensus 226 ~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~ 257 (411)
T KOG1305|consen 226 KKIQRVSNIAIILATLIYLLTGLFGYLTFGDL 257 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheeccc
Confidence 67888888888899999988888777777644
No 84
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.51 E-value=0.26 Score=54.88 Aligned_cols=152 Identities=9% Similarity=-0.048 Sum_probs=86.7
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCch
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~ 127 (593)
.|++++|-...--.++.++...+......+.. .|....+..+-..+...+.++.++..-++... -..++|.++=+|++
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK-YTVPDFIGDRYYSN 108 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccHHHHHHHHhCCC
Confidence 48899998887777777877766655443333 35442221111111222344566666666543 36888888888855
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 007682 128 -VAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (593)
Q Consensus 128 -~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i 206 (593)
...+++....+..+.+.+....+.+..++.+++ .+.+.. +.++.++........|+|...+.
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g----i~~~~~-------------iii~~~i~~iYt~~GG~~aV~~T 171 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE----VDFETG-------------VFIGMAIVFFYAVLGGMKGVTWT 171 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHhhhHHHHHHH
Confidence 566677666666677777666666666666653 121110 11222233444455788887776
Q ss_pred HHHHHHHHHHHH
Q 007682 207 QAIVTTANVLAM 218 (593)
Q Consensus 207 ~~~~~~~~li~~ 218 (593)
..+=..++++..
T Consensus 172 D~iQ~iim~ig~ 183 (552)
T TIGR03648 172 QVAQYIVLIVAY 183 (552)
T ss_pred HHHHHHHHHHHH
Confidence 655555555443
No 85
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.46 E-value=0.024 Score=61.26 Aligned_cols=225 Identities=14% Similarity=0.086 Sum_probs=118.0
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC---------chhH
Q 007682 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFP---------FGVN 249 (593)
Q Consensus 179 ~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p---------~g~~ 249 (593)
.++-.+++++++.+..+--+|-. ++...+..++++=++.+.+.|++.-.++ .... ....| ++..
T Consensus 130 ~~Vv~it~~ILv~LF~iQ~~GT~---~ig~~FgPim~~WF~~l~~~G~~~I~~~-p~Vl---~A~nP~yai~f~~~~~~~ 202 (534)
T PF02705_consen 130 PYVVPITIAILVGLFAIQRFGTA---KIGKLFGPIMLLWFLTLGVLGLYNIIQH-PEVL---KALNPYYAIRFFIRNGWI 202 (534)
T ss_pred ceehhHHHHHHHHHHHHHhhhhh---HHHHHHhHHHHHHHHHHHHHHHHHHhhC-HHHH---HHhCHHHHHHHHHHcCCc
Confidence 33445677777777777777754 5556677777776666667776643222 1000 11111 1222
Q ss_pred HHHHHHHHHHHHhhhhhhHhhhhhhhhC-CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcch
Q 007682 250 GMLAGSATVFFAFIGFDAVASTAEEVKN-PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGM 328 (593)
Q Consensus 250 ~~~~~~~~~~~a~~G~e~~a~~~~E~k~-P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~ 328 (593)
++ ..+...+.+.+|.|+--. |+-| .+|.+.++-..-..-+.++-=++..+....-|. +..+|+. ....
T Consensus 203 ~~-~~LG~V~L~~TGaEALyA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~---~~~npFf----~~~P 271 (534)
T PF02705_consen 203 GF-FVLGAVFLCVTGAEALYA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPE---AVSNPFF----LLIP 271 (534)
T ss_pred hh-hhcchHHHHHhhHHHHHh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcc---hhhhHHH----HHhH
Confidence 22 234466788899997643 4433 346666655543333333333333333333331 1234444 3334
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-ccccccccc----ccchHHHHHHHHHHHHHHHhhCHHH
Q 007682 329 HWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKTT----QVPVKSTIVTGIVAAALAFFMDVSA 403 (593)
Q Consensus 329 ~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~-~~~~~n~~~----~~P~~a~~~~~~l~~il~~~~~~~~ 403 (593)
+|+.+.+.+.+.++..-+..+.+.+.--+..+..+-|.+|+ ...+.+++. -.|..-.++...+..+...+.+-+.
T Consensus 272 ~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~ 351 (534)
T PF02705_consen 272 EWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSN 351 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHH
Confidence 45555444444333333333333344455566678899994 233444442 2666655555555544555567788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007682 404 LAGMVSVGTLLAFTMVAI 421 (593)
Q Consensus 404 l~~l~si~~l~~y~l~~~ 421 (593)
+.+.+++.......+..+
T Consensus 352 la~AYGiAVt~tM~iTT~ 369 (534)
T PF02705_consen 352 LAAAYGIAVTGTMLITTI 369 (534)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888776665555443
No 86
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.30 E-value=0.0034 Score=67.85 Aligned_cols=168 Identities=15% Similarity=0.056 Sum_probs=86.9
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH---HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHh
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA---LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICV 124 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~---~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~l 124 (593)
+|+.++++...+=++..+....+..-.. . ...|.+ ++++.+++.++..+.....+.++.+.-- ......|..|
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~-~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~F 81 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGAL-G-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRASF 81 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHH-H-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTTS
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHH-H-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--Cchhcchhcc
Confidence 4777889999886666655554443332 2 122332 5666666555544444444555555433 3566777889
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHH-HHHHHHHHHHHhhHHH
Q 007682 125 GEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAI-LVLIVTGLLCVGIKES 203 (593)
Q Consensus 125 G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~l~~~G~k~~ 203 (593)
|.+-+.+.+....+..+.+.+......++.+....+.....+....+ ....... ...++++ .-++.......|.|..
T Consensus 82 G~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~i~~~~~~~g~~~l 159 (440)
T PF02133_consen 82 GYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGN-AIIGIAL-PLWVCFFIFWLIQTLFAIYGMKAL 159 (440)
T ss_dssp -TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-------------HHHHHHHHHHHHHHCTHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhh-hhhcchh-hHHHHHHHHHHHHHHHHhcCHHHH
Confidence 98888888888887777777777777777777776543210011100 0000011 1112222 2233444566788888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007682 204 TIAQAIVTTANVLAMLFV 221 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~ 221 (593)
.++..+...+..+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (440)
T PF02133_consen 160 RRLAVIAAPILLVVFIGM 177 (440)
T ss_dssp HHHHHCCHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhhhhe
Confidence 888776666555544333
No 87
>PRK09395 actP acetate permease; Provisional
Probab=97.23 E-value=0.53 Score=52.42 Aligned_cols=152 Identities=17% Similarity=0.133 Sum_probs=83.1
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHH-HHHHHHHHhhhccCCC--ccccchHHHh
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAF-SAFCYAELASRCPSAG--SAYHYSYICV 124 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~-~al~~ael~s~~p~~G--G~y~~~~~~l 124 (593)
.|++++|...+--+++.++.+.+......++. .|...++ +.++.....+ ..+.+ +.++.+.| ..++|.++=+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~---~~~~r~~g~~T~~d~l~~Ry 142 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLI---AERLRNLGKYTFADVASYRL 142 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHH---HHHHhhCCCccHHHHHHHHc
Confidence 57899988777667777777766655544433 3554332 2222222222 23333 34444332 3444555667
Q ss_pred C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHH
Q 007682 125 G-EGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKES 203 (593)
Q Consensus 125 G-~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~ 203 (593)
| +....+++....+..+.+.+....+.+..+...++ .+.+.. +.+..++........|+|..
T Consensus 143 gs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g----i~~~~~-------------ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 143 KQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG----LNYHVA-------------VVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHH-------------HHHHHHHHHHHHhhcchHHH
Confidence 7 45777777777776677776666666666665553 121110 12222333444455788887
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007682 204 TIAQAIVTTANVLAMLFV 221 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~ 221 (593)
.+...+=.+++++..+++
T Consensus 206 ~~TD~iQ~iim~~g~ii~ 223 (551)
T PRK09395 206 TWVQIIKAVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777666555555554433
No 88
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.39 Score=50.88 Aligned_cols=42 Identities=10% Similarity=-0.054 Sum_probs=27.0
Q ss_pred CChHHHHHHHcc---hhHHHHHHHHHHHHHHHHHHhhhhcchhHH
Q 007682 316 DTPISSAFASHG---MHWASYVITIGAVTALCSTLMGSILPQPRI 357 (593)
Q Consensus 316 ~~~~~~~~~~~g---~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~ 357 (593)
.++..++++... ++....++.+..+.+-.++..+..++...+
T Consensus 268 ~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~ 312 (416)
T COG1914 268 VADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIV 312 (416)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHH
Confidence 346666665543 677777777777777777776665555554
No 89
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.22 E-value=0.46 Score=51.50 Aligned_cols=87 Identities=13% Similarity=0.125 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHH--HHHHHHHHHHHhhCHH---HHHH
Q 007682 332 SYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTI--VTGIVAAALAFFMDVS---ALAG 406 (593)
Q Consensus 332 ~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~--~~~~l~~il~~~~~~~---~l~~ 406 (593)
..++....++..+...++..++.+..+..++.+| +.|+. .+.+..+ +.++++..+...+.++ ++..
T Consensus 391 ~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep~--~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~i 461 (485)
T PF02028_consen 391 SKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEPP--RWLRIFWGLIIGALAIVLLLIGGLDALQSASI 461 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCCc--hHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3456666666677777788888999999998876 22221 2223222 4455555555556554 4555
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 007682 407 MVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 407 l~si~~l~~y~l~~~~~l~lr 427 (593)
+.++...+...++..++++.-
T Consensus 462 i~~lP~~~v~~~~~~~~~k~l 482 (485)
T PF02028_consen 462 IGGLPFSFVMLLMCISFIKAL 482 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666643
No 90
>PRK10484 putative transporter; Provisional
Probab=97.01 E-value=0.81 Score=50.59 Aligned_cols=297 Identities=12% Similarity=0.030 Sum_probs=135.0
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCch
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~ 127 (593)
.|++++|-..+--.++.++.+.+......++. .|.......+...+..++.++.++.--.|.. .=..++|.++=+|++
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEVTAAIALIILALIFLPRYLKSG-ITTIPDFLEERYDKT 114 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHhcCch
Confidence 48899998777777777777766655544433 4655332222233333334443333222321 235777888888887
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHccC--CChhhhhhhccCCCCccchhHHHHH--HHHHHHHHHHHhhHH
Q 007682 128 VAWLIGWALILEYTIG-GSAVARGISPNLAMLFGSA--DSLPFFMARQQIPGLGIIVDPCAAI--LVLIVTGLLCVGIKE 202 (593)
Q Consensus 128 ~g~~~gw~~~~~~~~~-~a~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~~l~~~G~k~ 202 (593)
.....+....+.+... .+......+..+..++... .+.+... .. .+..+ .++........|+|.
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~----------~~-~~~~~~~~~i~~~Yt~~GGl~a 183 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGA----------AI-WLLVWLIGIIGAIYAVFGGLKA 183 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHH----------HH-HHHHHHHHHHHhhhhhhhhHHH
Confidence 6555555554444432 2222222222222222100 0011000 00 01111 112234445578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc----cCC--------CCCCCCC-CCCCchhHHHHHHHHHHHHHhhhhh-hH
Q 007682 203 STIAQAIVTTANVLAMLFVIIAGSYLGFK----TGW--------SGYELPT-GYFPFGVNGMLAGSATVFFAFIGFD-AV 268 (593)
Q Consensus 203 ~~~i~~~~~~~~li~~~~~~i~~~~~~~~----~~~--------~~~~~~~-~~~p~g~~~~~~~~~~~~~a~~G~e-~~ 268 (593)
..+...+=..++++..+++.+.++..... +++ ...+..+ ...+..+...+.+.......+.+.+ ..
T Consensus 184 V~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~ 263 (523)
T PRK10484 184 VAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSI 263 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHH
Confidence 87766665555555543333322221100 000 0000000 0011223333333222111222211 11
Q ss_pred hhhhhhhhCCCCChhHHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHH
Q 007682 269 ASTAEEVKNPQRDLPLGIGTALSICCALYMLV---SIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCS 345 (593)
Q Consensus 269 a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~---~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~ 345 (593)
..-.=-.||+ |+..|+.+.+.....+.+... .+......|.+..+++..++....+...+++.-++..+.+.+..+
T Consensus 264 ~qR~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mS 342 (523)
T PRK10484 264 VQRALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILS 342 (523)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHH
Confidence 1122223553 566777777655443333322 122222334322234556666666777788887888888888888
Q ss_pred HHhhhhcchhHHH
Q 007682 346 TLMGSILPQPRIL 358 (593)
Q Consensus 346 s~~~~~~~~sR~l 358 (593)
+..+.+.+.+-.+
T Consensus 343 T~~s~l~s~st~~ 355 (523)
T PRK10484 343 TFNGFLNSASTLF 355 (523)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777766554
No 91
>PLN00150 potassium ion transporter family protein; Provisional
Probab=96.41 E-value=0.77 Score=51.79 Aligned_cols=220 Identities=12% Similarity=0.107 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHH--------HH
Q 007682 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGML--------AG 254 (593)
Q Consensus 183 ~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~--------~~ 254 (593)
.+++++++.+..+--+|. .++...+..++++=++.+.+.|++...+.+.... ..+.|.-...++ ..
T Consensus 216 ~is~~ILv~LF~iQ~~GT---~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~ff~~~~~~g~~~ 289 (779)
T PLN00150 216 IISCVILVILFSLQRFGT---HKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVF---LAFNPLYIVSFFIRNGRQGWES 289 (779)
T ss_pred hhHHHHHHHHHHHHhccc---hhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHH---hhcCHHHHHHHHHhCCCceEEE
Confidence 467777777777777774 4566667777777777777777765433321111 112221111111 12
Q ss_pred HHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHH
Q 007682 255 SATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYV 334 (593)
Q Consensus 255 ~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~i 334 (593)
+..++.+.+|.|+--.=-+ .-.+|.|.+|-...+.=+.++.=++..+....-|. +..+|+.. ...+|+.|.
T Consensus 290 LG~V~L~iTGaEALyADlG--HFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~---~~~npFf~----~iP~~~~~P 360 (779)
T PLN00150 290 LGGIVLCMTGTEAMFADLG--HFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHME---DVNDPFYR----SLPKPIYWP 360 (779)
T ss_pred ecceeeeecchhhhhcccc--CCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHH----hCCchhHHH
Confidence 3345677889886532222 23356666665433333333322333333332221 22345443 333444443
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-ccccccccc----ccchHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 007682 335 ITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKTT----QVPVKSTIVTGIVAAALAFFMDVSALAGMVS 409 (593)
Q Consensus 335 v~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~-~~~~~n~~~----~~P~~a~~~~~~l~~il~~~~~~~~l~~l~s 409 (593)
+.+.+.++..-+..+.+.+.=-+..+.-+-|.+|+ ..-+.+++. ..|..-.++...+.++...+.+.+.+.+.++
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 33333333332222223233344455567799994 223333331 2666655555555554455567777888777
Q ss_pred HHHHHHHH
Q 007682 410 VGTLLAFT 417 (593)
Q Consensus 410 i~~l~~y~ 417 (593)
+.......
T Consensus 441 iAV~~vM~ 448 (779)
T PLN00150 441 IAVVGVMI 448 (779)
T ss_pred hheehhhH
Confidence 66544333
No 92
>PLN00151 potassium transporter; Provisional
Probab=96.40 E-value=0.64 Score=52.59 Aligned_cols=221 Identities=11% Similarity=0.047 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHH--------HH
Q 007682 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGML--------AG 254 (593)
Q Consensus 183 ~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~--------~~ 254 (593)
.+++++++.+..+--+|. .++...+..++++=++.+...|++...+.+.... ..+.|.-...++ ..
T Consensus 276 ~Is~~ILv~LF~~Q~~GT---~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl---~AlnP~Y~~~Ff~~~~~~gw~~ 349 (852)
T PLN00151 276 MISVAFLVILFSVQRFGT---SKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVF---RAFNPVYIYYFFKRNSTKAWSA 349 (852)
T ss_pred hHHHHHHHHHHHHHhccc---hhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHH---hhhCHHHHHHHHHhCCCceEEE
Confidence 467777777777777774 4556666777776666666777764333221110 112221111111 12
Q ss_pred HHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHH
Q 007682 255 SATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYV 334 (593)
Q Consensus 255 ~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~i 334 (593)
+..++.+++|.|+--.=-+ .-.+|.|.+|-...+.=+.++.=++..+...--|. +..+|++ ....+|+.|-
T Consensus 350 LGgVvLciTGaEALfADLG--HFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~---~~~npFy----~svP~~~~wP 420 (852)
T PLN00151 350 LGGCVLCATGSEAMFADLG--YFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPD---SAEQIFF----SSVPSSLFWP 420 (852)
T ss_pred ecceeeeeccchhhhcccC--CCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHH----HhCCchhHHH
Confidence 3345677889886432222 23356666655443333333333333333332221 1234443 2333444443
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-cccccccc-c---ccchHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 007682 335 ITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKT-T---QVPVKSTIVTGIVAAALAFFMDVSALAGMVS 409 (593)
Q Consensus 335 v~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~-~~~~~n~~-~---~~P~~a~~~~~~l~~il~~~~~~~~l~~l~s 409 (593)
+.+.+.++..-+..+.+.+.=-++.+..+-|.+|+ ..-+.+++ . ..|..-.++...+.++...+.+.+.+.+.++
T Consensus 421 ~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYG 500 (852)
T PLN00151 421 VFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYG 500 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhh
Confidence 33333333222222222223344455567789993 22333333 2 2676665555555555555567778888777
Q ss_pred HHHHHHHHH
Q 007682 410 VGTLLAFTM 418 (593)
Q Consensus 410 i~~l~~y~l 418 (593)
++.....++
T Consensus 501 iAV~~vM~i 509 (852)
T PLN00151 501 IAEVGVMMV 509 (852)
T ss_pred hhhhhhhhH
Confidence 665444433
No 93
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.32 E-value=2.1 Score=46.28 Aligned_cols=91 Identities=15% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHH---HHHH
Q 007682 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSA---LAGM 407 (593)
Q Consensus 331 ~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~---l~~l 407 (593)
+..+..+..++....-.+++.++++-++..++..| +.|+....-+.--++.+++++.+.+.+.++. ..-+
T Consensus 403 l~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~-------~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii 475 (537)
T COG1292 403 LGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRG-------GEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAII 475 (537)
T ss_pred HHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccC-------CCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555666666666667788889999999888876 2222222333334455666666666666554 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 007682 408 VSVGTLLAFTMVAISVLILRY 428 (593)
Q Consensus 408 ~si~~l~~y~l~~~~~l~lr~ 428 (593)
.+....+..+++..++.+--+
T Consensus 476 ~alPF~~vll~~~~sl~k~l~ 496 (537)
T COG1292 476 TALPFSLVLLVMMFSLIKDLK 496 (537)
T ss_pred HHccHHHHHHHHHHHHHHHHH
Confidence 444445555555566666433
No 94
>PLN00149 potassium transporter; Provisional
Probab=96.26 E-value=0.8 Score=51.76 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHH--------HH
Q 007682 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGML--------AG 254 (593)
Q Consensus 183 ~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~--------~~ 254 (593)
.+++++++.+..+--+|. .++...+..++++=++.+...|++...+.+.... ..+.|.-...++ ..
T Consensus 200 ~is~~ILv~LF~~Q~~GT---~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~f~~~~~~~g~~~ 273 (779)
T PLN00149 200 PVACIILIGLFALQHYGT---HRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVY---QALSPYYMYKFLKKTQRGGWMS 273 (779)
T ss_pred HHHHHHHHHHHHHhcccc---HHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHh---hhcCHHHHHHHHHHCCCceeEe
Confidence 367777777777777774 4566667777777777777777764333221111 122231111111 12
Q ss_pred HHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHH
Q 007682 255 SATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYV 334 (593)
Q Consensus 255 ~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~i 334 (593)
+..++.+++|.|+--. +-=.-.+|.|.+|-...+.=+.++.=++..+...--|...-+..+|+.. ...+|+.|.
T Consensus 274 LGgV~L~iTG~EALyA--DlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~----~iP~~~~~P 347 (779)
T PLN00149 274 LGGILLCITGSEAMFA--DLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYV----SVPEKLRWP 347 (779)
T ss_pred ecchhhcccchhhhhh--cccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHH----hCCchhHHH
Confidence 3346778889996532 2223335666666554444444433333344433333221222335443 333444443
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-ccccccccc----ccchHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 007682 335 ITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKTT----QVPVKSTIVTGIVAAALAFFMDVSALAGMVS 409 (593)
Q Consensus 335 v~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~-~~~~~n~~~----~~P~~a~~~~~~l~~il~~~~~~~~l~~l~s 409 (593)
+.+.+.++..-+..+.+.+.=-++...-+-|.+|+ ..-+.+++. ..|..-.++...+.++...+-+.+.+.+.++
T Consensus 348 ~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 427 (779)
T PLN00149 348 VLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASG 427 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhh
Confidence 33333333332222222233344455567799993 223333321 2666655555555554455567777888777
Q ss_pred HHHHHHHHH
Q 007682 410 VGTLLAFTM 418 (593)
Q Consensus 410 i~~l~~y~l 418 (593)
+.......+
T Consensus 428 iAV~~vM~i 436 (779)
T PLN00149 428 LAVITVMLV 436 (779)
T ss_pred hhhehHHHH
Confidence 665444333
No 95
>PRK09950 putative transporter; Provisional
Probab=96.01 E-value=3.1 Score=45.39 Aligned_cols=102 Identities=8% Similarity=0.061 Sum_probs=54.6
Q ss_pred hHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHH
Q 007682 318 PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAF 397 (593)
Q Consensus 318 ~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~ 397 (593)
.+.+.+++.. +..+.....++..+...+++.++.+.++..++.+|.-++ .|++......=-+..++++..+..
T Consensus 390 a~~~~l~~lP---~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~----~~P~~~~ri~W~i~~g~ia~~Ll~ 462 (506)
T PRK09950 390 AVQQLLSSLP---AGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREG----DDPDRGLRLFWCVVITLIPLSILF 462 (506)
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCC----CCCCcchhHHHHHHHHHHHHHHHH
Confidence 3444555543 445666666777777788888889999988888664331 122211111122234445555555
Q ss_pred hhC-HHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 007682 398 FMD-VSA---LAGMVSVGTLLAFTMVAISVLIL 426 (593)
Q Consensus 398 ~~~-~~~---l~~l~si~~l~~y~l~~~~~l~l 426 (593)
.+. ++. ...+.++...+...+...+.++-
T Consensus 463 ~gG~l~~lQ~~~ii~alP~~~i~~l~~~s~~k~ 495 (506)
T PRK09950 463 TGASLDTMKTTVVLTALPFLVILLIKVYGFIRW 495 (506)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 553 44444444444445555555443
No 96
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.91 E-value=0.38 Score=52.87 Aligned_cols=224 Identities=15% Similarity=0.102 Sum_probs=109.3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHH------
Q 007682 179 IIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGML------ 252 (593)
Q Consensus 179 ~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~------ 252 (593)
.++-.+++++++.+..+--+| ..++...++.++++=++.+.+.|++...++ ... -....|.-...++
T Consensus 141 ~~Vvpit~~ILv~LF~iQ~~G---T~~vG~~FgPIm~vWF~~i~~~Gi~~I~~~-P~V---l~AlnP~ya~~f~~~~~~~ 213 (622)
T PRK10745 141 TYIVPLSIIVLTLLFMIQKHG---TGMVGKLFAPIMLTWFLTLAVLGLRSIIAN-PEV---LHALNPMWAVHFFLEYKTV 213 (622)
T ss_pred CccHHHHHHHHHHHHHHhccc---cHHHhhhhhhHHHHHHHHHHHHHHHHHhcC-HHH---HhHhCHHHHHHHHHhCCCc
Confidence 334446777777777777777 456666777777777777777777643322 110 0122221111111
Q ss_pred --HHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhH
Q 007682 253 --AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHW 330 (593)
Q Consensus 253 --~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~ 330 (593)
..+..++.+.+|.|+--. +-=.-.+|.+.++-.....=+.++.=++..+....-|. ...+|+... ..+|
T Consensus 214 gf~~LG~V~L~vTGaEALYA--DmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~---~~~NpFf~~----~P~~ 284 (622)
T PRK10745 214 SFFALGAVVLAITGVEALYA--DMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPE---AIKNPFFLL----APDW 284 (622)
T ss_pred eEEEecceeeeccchHHHhh--ccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCch---hhcCcHHHh----CChh
Confidence 123346778889996532 22233356676665544443333333333333332221 224555433 3345
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-cccccccc-c-c--cchHHHHHHHHHHHHHHHhhCHHHHH
Q 007682 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKT-T-Q--VPVKSTIVTGIVAAALAFFMDVSALA 405 (593)
Q Consensus 331 ~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~-~~~~~n~~-~-~--~P~~a~~~~~~l~~il~~~~~~~~l~ 405 (593)
+.+...+.+.++..-+..+.+.+.=-+..+..+-|.+|+ ...+.+++ . + .|..-..+...+..+...+.+-+.+.
T Consensus 285 ~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La 364 (622)
T PRK10745 285 ALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLA 364 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHH
Confidence 544333333333222222222223344455567799994 23344433 1 2 55554444444433334445667777
Q ss_pred HHHHHHHHHHHHH
Q 007682 406 GMVSVGTLLAFTM 418 (593)
Q Consensus 406 ~l~si~~l~~y~l 418 (593)
+.+++..-....+
T Consensus 365 ~AYGiAVt~tM~i 377 (622)
T PRK10745 365 AAYGIAVTGTMVL 377 (622)
T ss_pred HHhhhhheeHhHH
Confidence 7777664443333
No 97
>PLN00148 potassium transporter; Provisional
Probab=95.91 E-value=0.91 Score=51.29 Aligned_cols=218 Identities=11% Similarity=0.058 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHH--------HHH
Q 007682 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGM--------LAG 254 (593)
Q Consensus 183 ~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~--------~~~ 254 (593)
.+++++++.+..+--+|. .++...+..++++=++.+...|++...+.+.... ..+.|.-...+ +..
T Consensus 199 ~is~~ILv~LF~vQ~~GT---~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl---~AlnP~y~~~ff~~~~~~g~~~ 272 (785)
T PLN00148 199 LLACVILVGLFALQHCGT---HRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKII---HALSPYYIIKFFRVTGKDGWIS 272 (785)
T ss_pred hHHHHHHHHHHHHhcccc---HHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHh---hhcCHHHHHHHHHhCCCceEEe
Confidence 467777777777777774 4556667777777677777777764333321111 11222111111 112
Q ss_pred HHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHH
Q 007682 255 SATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYV 334 (593)
Q Consensus 255 ~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~i 334 (593)
+..++.+.+|.|+--.=-+ .-.+|.|.+|-...+.=+.++.=++..+...--| + +..+|+.. ...+|+.|.
T Consensus 273 LGgV~L~iTGaEALyADlG--HFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p-~--~~~npFf~----~iP~~~~~P 343 (785)
T PLN00148 273 LGGILLSITGTEAMFADLG--HFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNI-P--SIPNSFYD----SIPDPVFWP 343 (785)
T ss_pred ecchheeccchhhhhhhcc--CCCccceEEeeeehHHHHHHHHHcchHHHHhcCc-c--cccCcHHH----hCCchhHHH
Confidence 3345778889996532222 3335666666544433333333333333333222 1 22345443 233344443
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-ccccccccc----ccchHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 007682 335 ITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKTT----QVPVKSTIVTGIVAAALAFFMDVSALAGMVS 409 (593)
Q Consensus 335 v~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~-~~~~~n~~~----~~P~~a~~~~~~l~~il~~~~~~~~l~~l~s 409 (593)
+.+.+.++..-+..+.+.+.=-+.....+-|.+|+ ..-+.+++. ..|..-.++...+.++...+.+.+.+.+.++
T Consensus 344 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYG 423 (785)
T PLN00148 344 VFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYG 423 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhh
Confidence 33333333332222222233344455567799993 223334332 2676665555555555555567777777777
Q ss_pred HHHHHH
Q 007682 410 VGTLLA 415 (593)
Q Consensus 410 i~~l~~ 415 (593)
+.....
T Consensus 424 iAV~~v 429 (785)
T PLN00148 424 LACMTV 429 (785)
T ss_pred hheeeH
Confidence 664433
No 98
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.80 E-value=0.27 Score=54.93 Aligned_cols=224 Identities=17% Similarity=0.125 Sum_probs=111.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCc---------hhHH
Q 007682 180 IVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---------GVNG 250 (593)
Q Consensus 180 ~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~---------g~~~ 250 (593)
++-.+++++++.+..+--+|- .++...++.++++=++.+.+.|++.....++... ..+.|. +..+
T Consensus 167 ~Vv~it~~ILv~LF~iQ~~GT---~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl---~AlnP~ya~~f~~~~~~~~ 240 (688)
T TIGR00794 167 WVVPISCIILVLLFLIQRFGT---AKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVL---KALSPYYAVQFFIEYGTVG 240 (688)
T ss_pred eehhHHHHHHHHHHHHhcccc---HHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHH---hHhCHHHHHHHHHHCCCce
Confidence 333467777777777777774 4666667777777777777777764333111110 112221 1111
Q ss_pred HHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhH
Q 007682 251 MLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHW 330 (593)
Q Consensus 251 ~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~ 330 (593)
+ ..+..++.+.+|.|+--.=-+ .-.+|.+.++-..-+.-+.++.=++..+....-|. +..+|+.. ...+|
T Consensus 241 ~-~~LG~V~L~iTGaEALyADmG--HFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~---~~~NpFf~----~~P~~ 310 (688)
T TIGR00794 241 W-VSLGGVVLSITGVEAMFADLG--HFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPE---AIKNPFFL----SIPDW 310 (688)
T ss_pred e-eeccchhheeccHhhhhcccC--CCCcccceeehHHHHHHHHHHHHcchHHHHhcCcc---hhcCcHHH----hCchH
Confidence 1 123456788899996532222 23356666665533333333333333333332221 12345543 33455
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcc-cccccccc-c---ccchHHHHHHHHHHHHHHHhhCHHHHH
Q 007682 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPP-FFSDVNKT-T---QVPVKSTIVTGIVAAALAFFMDVSALA 405 (593)
Q Consensus 331 ~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~-~~~~~n~~-~---~~P~~a~~~~~~l~~il~~~~~~~~l~ 405 (593)
+.+...+.+.++..-+..+.+.+.=-+..+..+-|.+|+ ...+.+++ . ..|..-.++...+..+...+.+-+.+.
T Consensus 311 ~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la 390 (688)
T TIGR00794 311 ALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLG 390 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHH
Confidence 554433333333332222223333344455567799994 23334433 1 256655554444444444455777777
Q ss_pred HHHHHHHHHHHHHH
Q 007682 406 GMVSVGTLLAFTMV 419 (593)
Q Consensus 406 ~l~si~~l~~y~l~ 419 (593)
+.+++.......+.
T Consensus 391 ~AYGiaVt~tM~iT 404 (688)
T TIGR00794 391 AAYGIAVTGTFLVT 404 (688)
T ss_pred HHhhhhhhhhhHHH
Confidence 77776655444443
No 99
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=95.59 E-value=3.9 Score=43.45 Aligned_cols=288 Identities=16% Similarity=0.121 Sum_probs=147.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccc-chHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007682 82 GPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYH-YSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFG 160 (593)
Q Consensus 82 G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~-~~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~ 160 (593)
|..-..+|..+.. +..++.+|-=+.+-+-- ..+ +.+|.-.++.-.+++..-++.-..+......+.+..+..+++
T Consensus 76 G~~Y~iG~~~Gy~---i~~fL~A~~LRk~GkyT-~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g 151 (529)
T COG4147 76 GLIYSIGWTGGYP---ILLFLIAEYLRKLGKYT-FADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG 151 (529)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHhcCCcc-hHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC
Confidence 4444444544433 24456666555543311 122 233333445555666666666666777777777777776664
Q ss_pred cCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------
Q 007682 161 SADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKT-------- 232 (593)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~-------- 232 (593)
- +... -+.++.++......+.|+|...+.|.+=-++.+...++..+...++-..+
T Consensus 152 v----~~~v-------------gv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~ 214 (529)
T COG4147 152 V----PYHV-------------GVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEA 214 (529)
T ss_pred C----Ccee-------------ehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence 2 1111 02344444555667789999999887766666666665555544431111
Q ss_pred -CCCCC-----CCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhh------hhhhhhCCCCChhHHHHHHHHHHHHHHHHH
Q 007682 233 -GWSGY-----ELPTGYFPFGVNGMLAGSATVFFAFIGFDAVAS------TAEEVKNPQRDLPLGIGTALSICCALYMLV 300 (593)
Q Consensus 233 -~~~~~-----~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~------~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~ 300 (593)
+-+.. ..+++.....+.+++ ..++--..|.-...| ...++|+.| |+..+++.....+|+..
T Consensus 215 ~~~~~~~~~~~~~~pGl~~~~~i~~i---sl~~aLm~GTAgLPHil~RFfTvp~~k~AR----~Sv~wA~~fIg~fYi~~ 287 (529)
T COG4147 215 VTVHPKDDGSDIMEPGLLYKDPIDFI---SLGFALMVGTAGLPHILMRFFTVPDAKEAR----KSVFWATGFIGIFYILT 287 (529)
T ss_pred hhcCcccCcccccCCCCcccCHHHHH---HHHHHHHHccCCCCeEEEEEEecCcHHHHH----HHHHHHHHHHHHHHHHH
Confidence 00001 111223332333333 334444455554444 345555544 56667777778888766
Q ss_pred HHHHH----hhc--cCC------------CCCC-------CChHHHHHHHcc-hhHHHHHHHHHHHHHHHHHHhhhhcch
Q 007682 301 SIVIV----GLV--PYY------------EMDP-------DTPISSAFASHG-MHWASYVITIGAVTALCSTLMGSILPQ 354 (593)
Q Consensus 301 ~~~l~----~~~--p~~------------~l~~-------~~~~~~~~~~~g-~~~~~~iv~i~~~~~~~~s~~~~~~~~ 354 (593)
.+.-. .+. |.. |.+. +.....+...++ ++|...++..+.+...+++..+.....
T Consensus 288 ~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~i 367 (529)
T COG4147 288 PIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVI 367 (529)
T ss_pred HHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHH
Confidence 54422 221 111 1110 112233445556 688888888888888887766666554
Q ss_pred hHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHHh
Q 007682 355 PRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFF 398 (593)
Q Consensus 355 sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~ 398 (593)
+-.+...--++.+-+..++. |+-..-..+..+.++++..+...
T Consensus 368 asavsHDiY~~vik~~ase~-~~v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 368 ASAVSHDLYAMVIKKGATEK-KEVRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred HHHHHhHHHHHHhCCCCCcc-ceehhHHHHHHHHHHHHHHheec
Confidence 43332222223333333332 22245555666666666665544
No 100
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.23 E-value=5 Score=44.41 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=41.7
Q ss_pred ChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHH-HHHHHHHHHHHHHHHhhhccCCCccccc
Q 007682 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLI-AGIASAFSAFCYAELASRCPSAGSAYHY 119 (593)
Q Consensus 52 ~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii-~~l~~l~~al~~ael~s~~p~~GG~y~~ 119 (593)
+..+-+.-++|..+|.|.+-..+.....++|..-++.+++ ..+..+|....-.-+++.. +.|..-.|
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~-~~~~~~~~ 73 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYS-RSGPIGAW 73 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTSHHHS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 4467777888999999988888877778888775555555 3345555544433333333 33444445
No 101
>PRK09928 choline transport protein BetT; Provisional
Probab=94.56 E-value=10 Score=42.73 Aligned_cols=102 Identities=11% Similarity=-0.045 Sum_probs=55.2
Q ss_pred hHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHH
Q 007682 318 PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAF 397 (593)
Q Consensus 318 ~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~ 397 (593)
.+...+++.. +..+..+..++..+...+++.++++-++..++..|.-++. |+.......=-++.++++..+..
T Consensus 397 alf~~l~~lP---~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~----~pp~~~RifW~v~ig~la~~LL~ 469 (679)
T PRK09928 397 GFYSLLAQYP---AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS----DAPNWLRVFWSVAIGLLTLGMLM 469 (679)
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC----CCCcceeeHHHHHHHHHHHHHHH
Confidence 3444555553 3345555556666667778888899999888887643311 11111222223344555555666
Q ss_pred hhCHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 007682 398 FMDVSA---LAGMVSVGTLLAFTMVAISVLIL 426 (593)
Q Consensus 398 ~~~~~~---l~~l~si~~l~~y~l~~~~~l~l 426 (593)
.+.++. ...+.++...+...++..++++-
T Consensus 470 ~GGL~aLQt~sii~alPf~~I~ll~~~sl~k~ 501 (679)
T PRK09928 470 TNGISALQNTTVIMGLPFSFVIFFVMAGLYKS 501 (679)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666654 44444444555555555555554
No 102
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.35 E-value=8.6 Score=41.01 Aligned_cols=173 Identities=10% Similarity=-0.032 Sum_probs=83.1
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccCh---HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHH
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGP---ALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYIC 123 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~---~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~ 123 (593)
-+|+.++|+-..+=.+..++++-+...++ +.+. |. ..+..++++=++.......-+..++.+.- |.-.-.|..
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s-~l~l-GLswwq~~~tv~vG~~~~~~f~~lns~~G~~yhI--sFpv~sR~s 127 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGS-ALEL-GLSWWQTWITVWVGYLFTAIFLVLNSRPGSDYHI--SFPVLSRSS 127 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhh-HHhc-cCCHHHHHHHHHHHHHHHHHHHHHccCCCccccc--ceeeeeeee
Confidence 56889999999987777777776666655 3233 33 25555555544443333333333332221 111223344
Q ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHH-HH
Q 007682 124 VGEGVAWLIGWALILEYTIGGSAVARGISPNL----AMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLL-CV 198 (593)
Q Consensus 124 lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~-~~ 198 (593)
||-......-.+-.+.-+++-+..+...++.+ .+.++.....|+.+. -+..+.+. ++++.+.+++.... ++
T Consensus 128 FGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~---~~~~tt~e-~i~FfIFwv~s~~~~~~ 203 (572)
T KOG2466|consen 128 FGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLG---KPGTTTYE-FIGFFIFWVASLPFYWF 203 (572)
T ss_pred hhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccC---CCCCchHH-HHHHHHHHHHhhheeec
Confidence 55443333333333333344444444444433 344443333343332 12223322 34566666655543 46
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007682 199 GIKESTIAQAIVTTANVLAMLFVIIAGSY 227 (593)
Q Consensus 199 G~k~~~~i~~~~~~~~li~~~~~~i~~~~ 227 (593)
++....++..+-.++.....+.+.+....
T Consensus 204 ~p~~ir~lf~~ka~~t~fA~~g~LIw~l~ 232 (572)
T KOG2466|consen 204 PPYKIRHLFTWKAVLTPFAAFGFLIWLLK 232 (572)
T ss_pred cHHHhhhHHHHHHhhhHHHHHHHHHHHHH
Confidence 66666666655555554444444444443
No 103
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=92.90 E-value=17 Score=39.75 Aligned_cols=103 Identities=14% Similarity=0.029 Sum_probs=56.5
Q ss_pred hHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHH
Q 007682 318 PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAF 397 (593)
Q Consensus 318 ~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~ 397 (593)
.+.+.+++.. +..++....++..+...++..++.+.++..++.+|.-++ .|+.......=-++.++++..+..
T Consensus 393 alf~~l~~lP---l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~----~~p~~~~ri~W~v~ig~ia~~Ll~ 465 (504)
T PRK03356 393 AIIETWAALP---LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDG----EEPPLLVRIGWSILVGIIGIVLLA 465 (504)
T ss_pred HHHHHHHHCc---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCC----CCCCcchhhHHHHHHHHHHHHHHH
Confidence 4445555553 334556666666677778888889999999988764221 122211122222344555555555
Q ss_pred hhCHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 007682 398 FMDVS---ALAGMVSVGTLLAFTMVAISVLILR 427 (593)
Q Consensus 398 ~~~~~---~l~~l~si~~l~~y~l~~~~~l~lr 427 (593)
.+.++ +...+.++...+...+...+.++-.
T Consensus 466 ~GGl~~lQt~sii~alPf~~i~~l~~~sl~k~l 498 (504)
T PRK03356 466 LGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDA 498 (504)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 4445555555555555555555543
No 104
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=92.81 E-value=15 Score=38.90 Aligned_cols=43 Identities=16% Similarity=0.122 Sum_probs=33.1
Q ss_pred HHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 007682 319 ISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAM 361 (593)
Q Consensus 319 ~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~am 361 (593)
..+.++...|+++.+++.++.+.+-.+|..+...+..-++...
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455666778899999999999999999888887666554443
No 105
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=92.50 E-value=3.5 Score=44.60 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=33.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007682 178 GIIVDPCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLG 229 (593)
Q Consensus 178 ~~~~~~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~ 229 (593)
..++-++++++++.+..+-.+|-. ++.++++.++++=++.+...|+...
T Consensus 145 ~~~Vvpitl~IL~~LF~iQ~~GT~---~Vg~~FGPVm~lWF~~l~~~Gl~~i 193 (627)
T COG3158 145 DPYVVPITLIILVLLFLIQRFGTG---RVGKLFGPVMLLWFLALAVLGLINI 193 (627)
T ss_pred cCccHHHHHHHHHHHHHHhcccch---hhhhhhccHHHHHHHHHHHHHHHHH
Confidence 344445777887777778777754 5556677777777777777777643
No 106
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=88.49 E-value=7.6 Score=39.52 Aligned_cols=347 Identities=11% Similarity=0.090 Sum_probs=160.7
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHH----HHHHHHHHhh---hccCCCccccch
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAF----SAFCYAELAS---RCPSAGSAYHYS 120 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~----~al~~ael~s---~~p~~GG~y~~~ 120 (593)
+.+++-|++..=...++=| .|+..-..+.-.+|...+.+++.++....- ..-|..|=+. ..... -.|.=+
T Consensus 114 ~~kI~a~qAaWNVTNAIQG--MFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvR-dsYvaI 190 (524)
T KOG4303|consen 114 SEKISALQAAWNVTNAIQG--MFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVR-DSYVAI 190 (524)
T ss_pred CCccHHHHHhhhhhhhhhe--eeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEee-hhHHHH
Confidence 3568888887665554443 444433445556787777666654443222 1223333221 01101 123333
Q ss_pred HHH-hCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-ChhhhhhhccCCCCccchhHHHHHHHHHHHHHHH
Q 007682 121 YIC-VGEGVA-WLIGWALILEYTIGGSAVARGISPNLAMLFGSAD-SLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLC 197 (593)
Q Consensus 121 ~~~-lG~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~ 197 (593)
.+. .+|.+| ..+.-+.+++.+.+...+....++.+..-+++.. +-..|+ .++-+ .++..--+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm-------------~i~~a--~LLpc~FL 255 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWM-------------MITSA--SLLPCSFL 255 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchh-------------hhhhH--HHhhhHHH
Confidence 333 566655 4555556666666666665555555554443211 000111 12222 23333345
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC--CCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhh
Q 007682 198 VGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYEL--PTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEV 275 (593)
Q Consensus 198 ~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~--~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~ 275 (593)
..+|..+++..+.++..+++-++++..++-....=+|+...- .-.-+|. .+....|+|+--=...++-+.+
T Consensus 256 k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPi-------svG~iVFsYTSqIFLP~LEGNM 328 (524)
T KOG4303|consen 256 KDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPI-------SVGMIVFSYTSQIFLPNLEGNM 328 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCce-------EEEEEEEeeeceeecccccccc
Confidence 677888888888888888877776666554322222321110 0011222 1223456776666677888899
Q ss_pred hCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchh
Q 007682 276 KNPQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQP 355 (593)
Q Consensus 276 k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~s 355 (593)
|||++ +..-+-++=+...++=.+........+..... -.+-.++.+..+..++.+..++-.+.+----++++.
T Consensus 329 ~~ps~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tq------evItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAv 401 (524)
T KOG4303|consen 329 KNPSQ-FNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQ------EVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAV 401 (524)
T ss_pred CChhH-heeeeehHHHHHHHHHHHHHHheeeeechhhH------HHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHH
Confidence 99974 44444455555555544444333333321110 011112233334455555554443333222233333
Q ss_pred HHH----HHHHhcCCCcccc---cccccccccchH-HHHHHHHHHHHHHHhhCHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 007682 356 RIL----MAMARDGLLPPFF---SDVNKTTQVPVK-STIVTGIVAAALAFFMDVSALAGMVS--VGTLLAFTMVAISVLI 425 (593)
Q Consensus 356 R~l----~ama~dg~lP~~~---~~~n~~~~~P~~-a~~~~~~l~~il~~~~~~~~l~~l~s--i~~l~~y~l~~~~~l~ 425 (593)
.++ +.--..-.+|... +++.+. +...+ ++++..++.++ .++.+..|..+.+ .++++++++.+.--++
T Consensus 402 elLe~nlF~g~p~t~Fpscys~Dg~Lk~W-gltlR~~lvvfTllmAi--~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ 478 (524)
T KOG4303|consen 402 ELLENNLFLGYPQTPFPSCYSPDGSLKEW-GLTLRIILVVFTLLMAI--SVPHFVELMGLVGSITGTMLSFIWPALFHLY 478 (524)
T ss_pred HHHHHhhhcCCCCCCCceeeCCCcchhhh-eeeeeeHHHHHHHHHHH--HhHHHHHHHHhhcccccccHHHHHHHHHHHH
Confidence 332 1111112233222 233333 33333 44443333332 2344555555554 3456777776554454
Q ss_pred HhcC
Q 007682 426 LRYV 429 (593)
Q Consensus 426 lr~~ 429 (593)
++.+
T Consensus 479 ik~~ 482 (524)
T KOG4303|consen 479 IKEK 482 (524)
T ss_pred HHHH
Confidence 4433
No 107
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=87.13 E-value=58 Score=36.73 Aligned_cols=65 Identities=17% Similarity=0.232 Sum_probs=45.1
Q ss_pred ChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHH-HHHHHHHHHH---HHHHHhhhccCCCccccch
Q 007682 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLI-AGIASAFSAF---CYAELASRCPSAGSAYHYS 120 (593)
Q Consensus 52 ~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii-~~l~~l~~al---~~ael~s~~p~~GG~y~~~ 120 (593)
+..|-++-.+|-.+|.|..-..+..+.+++|.+-.+.+++ ..++.+|.-+ +.+++.++ |..-.|=
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~----g~v~~wr 107 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ----GPVSVWR 107 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC----ChHHHHH
Confidence 7789999999999999999988888889988764444444 5556666443 44444443 5555554
No 108
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=83.99 E-value=67 Score=34.68 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=52.3
Q ss_pred hHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHHH
Q 007682 318 PISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAF 397 (593)
Q Consensus 318 ~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~ 397 (593)
.+.+.+++.. +..+.....++..+...++..++.+.++..++.++.-++. ++.......=-+..++++..+.+
T Consensus 344 a~~~~l~~lP---~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~----ep~~~~ri~W~v~ig~~a~~ll~ 416 (453)
T TIGR00842 344 ALFGLLQALP---LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE----EPPKWVRVFWAVAIGLIALVLLF 416 (453)
T ss_pred HHHHHHHHCc---HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC----CCCcccchHHHHHHHHHHHHHHH
Confidence 3444455543 3445566666666777788888889998888564322110 11111111112233555555555
Q ss_pred hhC-HH---HHHHHHHHHHHHHHHHHHHHHHH
Q 007682 398 FMD-VS---ALAGMVSVGTLLAFTMVAISVLI 425 (593)
Q Consensus 398 ~~~-~~---~l~~l~si~~l~~y~l~~~~~l~ 425 (593)
.+. ++ ++..+.++...+...+...+.++
T Consensus 417 ~gG~l~~lQ~~~ii~alP~~~i~~l~~~sl~k 448 (453)
T TIGR00842 417 SGGSLAALQTTAIIAALPFSLVMLVVMASLIK 448 (453)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 55 34444455555555555555554
No 109
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=83.54 E-value=60 Score=33.77 Aligned_cols=274 Identities=14% Similarity=0.161 Sum_probs=128.5
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHH----HHHHHHHHHHHH-HHHHHHHHhhhccCC---Cc---c
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALA----LSFLIAGIASAF-SAFCYAELASRCPSA---GS---A 116 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i----~~~ii~~l~~l~-~al~~ael~s~~p~~---GG---~ 116 (593)
+|+++.+-+.+.-.++=+++..|. +||++. ++|++-+.+..+ .-+...-++.++.+- -+ .
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFi---------gGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI 108 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFI---------GGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTI 108 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhc---------CCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeH
Confidence 477777765555444434443333 455432 356665556666 444666666665431 11 1
Q ss_pred ccch-HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHH--HHH
Q 007682 117 YHYS-YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVL--IVT 193 (593)
Q Consensus 117 y~~~-~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~ 193 (593)
.++. +|.-++...++++..+++.+.....+.-.+.+..+....+-. .. .++.+.. +..
T Consensus 109 ~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gid----Y~---------------tgL~ifa~~V~i 169 (473)
T COG4145 109 NDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGID----YT---------------TGLLIFAVSVAI 169 (473)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCC----ch---------------hhHHHHHHHHHH
Confidence 2222 233467788888888888888777777666666666655411 10 1222211 122
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cc---CCCCCCCCCCCCCchhH-----HHHHHH-HHHHHHh
Q 007682 194 GLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGF--KT---GWSGYELPTGYFPFGVN-----GMLAGS-ATVFFAF 262 (593)
Q Consensus 194 ~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~--~~---~~~~~~~~~~~~p~g~~-----~~~~~~-~~~~~a~ 262 (593)
.-...|.|.+...-.+=+.++++.-+++.+..++.+. ++ ..+..+. +-..|.+.. .++..+ ...-+..
T Consensus 170 Yt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp-~lv~P~~~~~~l~~~Fm~Sfwilv~~gv 248 (473)
T COG4145 170 YTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDP-GLVTPQGADDILDPPFMASFWILVCFGV 248 (473)
T ss_pred HHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCc-cccCCCCCcccccchHHHHHHHHHHHHH
Confidence 2234466655544444444444443333332222110 00 0001110 001111110 121111 1112333
Q ss_pred hhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHHHH---hhccCCCCCCCChHHHHHHHcchhHHHHHHHHHH
Q 007682 263 IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIVIV---GLVPYYEMDPDTPISSAFASHGMHWASYVITIGA 339 (593)
Q Consensus 263 ~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~l~---~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~ 339 (593)
.|.--.+.-.-..|| +|.+.++|+++..++.++-+++-.+-. .++|... +.|.-++...-+...|...-+...+.
T Consensus 249 lglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt-~~D~Vip~lalkvlpp~~agifl~ap 326 (473)
T COG4145 249 LGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLT-VVDLVIPTLALKVLPPFAAGIFLAAP 326 (473)
T ss_pred hcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCC-ccchhHHHHHHHhcchHHHHHHHHHH
Confidence 444444444445577 577888998888888776554433221 1233222 23334444444555554444555555
Q ss_pred HHHHHHHHhhhhc
Q 007682 340 VTALCSTLMGSIL 352 (593)
Q Consensus 340 ~~~~~~s~~~~~~ 352 (593)
+.+..+++.+.+.
T Consensus 327 maAiMSTIds~L~ 339 (473)
T COG4145 327 MAAIMSTINSQLL 339 (473)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 110
>PRK10836 lysine transporter; Provisional
Probab=77.97 E-value=6.2 Score=43.19 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCccccCCchhhhHHHHHHHHHhhc
Q 007682 567 GGFMCPFVPLLPIACILINVYLLIN 591 (593)
Q Consensus 567 ~~f~~P~vP~~P~~sI~~N~~Lm~~ 591 (593)
..||+|+-|+.|.++++.+++++..
T Consensus 410 ~p~~~p~~p~~~~~~~~~~~~~~~~ 434 (489)
T PRK10836 410 LPYRSGFFPLGPIFAFVLCLIITLG 434 (489)
T ss_pred CCCcCCCccHHHHHHHHHHHHHHHH
Confidence 5799999999999999999998763
No 111
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=71.44 E-value=1.4e+02 Score=31.28 Aligned_cols=97 Identities=15% Similarity=-0.058 Sum_probs=60.9
Q ss_pred cChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHH
Q 007682 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVA 129 (593)
Q Consensus 51 l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g 129 (593)
.+.|-+...-+.++.|.|..+.+-. + ..-|+. +.+..+++.++.-..-=..+-+.|.-.+.-+.-.-+++.+|++.+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~-a-a~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPIL-A-AQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAK 129 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHH-H-HHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHH
Confidence 4557777888889999998886654 2 445776 555445555544443322233333222334677788999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 007682 130 WLIGWALILEYTIGGSAVAR 149 (593)
Q Consensus 130 ~~~gw~~~~~~~~~~a~~~~ 149 (593)
.+..+..++.-++..+..+.
T Consensus 130 ~lf~~f~~~~lilV~avF~~ 149 (376)
T PF02554_consen 130 KLFLIFIFFLLILVIAVFAD 149 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88877777666665555443
No 112
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=70.52 E-value=20 Score=38.55 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.2
Q ss_pred CCccccCCchhhhHHHHHHHHHhh
Q 007682 567 GGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 567 ~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
..||+|..|.+|++++.+.+++..
T Consensus 383 ~~~k~p~~~~~~~~~~~~~~~~~~ 406 (445)
T PRK11357 383 PLWRTPAFGLMTTLAIASSLILVA 406 (445)
T ss_pred CCcccCCchHHHHHHHHHHHHHHH
Confidence 459999999999999999998853
No 113
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=67.50 E-value=1.5e+02 Score=30.36 Aligned_cols=120 Identities=14% Similarity=0.132 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCC
Q 007682 288 TALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLL 367 (593)
Q Consensus 288 ~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~l 367 (593)
.+++++++++.+....+.-.... . +.....+..+..-+++...+..+..++.++++......++.-.+
T Consensus 40 ~gIivs~vlf~~~g~vim~ig~~--f-~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~--------- 107 (349)
T COG3949 40 LGIILSTVLFTLSGAVIMTIGKK--F-NATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLL--------- 107 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--h-cccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHH---------
Confidence 34455555555554443332211 1 12234457777888889999999999999988877776666553
Q ss_pred cccccccccccccchHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007682 368 PPFFSDVNKTTQVPVKST-IVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLIL 426 (593)
Q Consensus 368 P~~~~~~n~~~~~P~~a~-~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~l 426 (593)
|+.++.|..-= ++...+..+..++.+++.+..++++.+++.+.+.-......
T Consensus 108 -------~e~~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l~~v~~~~ 160 (349)
T COG3949 108 -------EEMFGLPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIILVLVTLSF 160 (349)
T ss_pred -------HHHhCccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHHHHHHHHH
Confidence 44568888733 44444455555566688888888887777666644433333
No 114
>PRK11387 S-methylmethionine transporter; Provisional
Probab=63.10 E-value=28 Score=37.81 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=21.5
Q ss_pred CCCccccCCchhhhHHHHHHHHHhh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
+..||+|.-|++|.+++..+++++.
T Consensus 402 ~~~~~~~~~~~~~~l~~~~~~~~~~ 426 (471)
T PRK11387 402 ELAYRAPWYPLTPILGFVLCLLACV 426 (471)
T ss_pred CCCccCCCccHHHHHHHHHHHHHHH
Confidence 3569999999999999999987764
No 115
>PTZ00206 amino acid transporter; Provisional
Probab=60.98 E-value=1e+02 Score=33.54 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=42.5
Q ss_pred CChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccc
Q 007682 316 DTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFF 371 (593)
Q Consensus 316 ~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~ 371 (593)
.....++.+...++++.+++.+..++..+++..+++......+...-++...|+++
T Consensus 120 ~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~ 175 (467)
T PTZ00206 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL 175 (467)
T ss_pred CCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence 34567777777789999999999999999999999888887776655443334444
No 116
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=59.26 E-value=32 Score=37.57 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=22.3
Q ss_pred CCCccccCCchhhhHHHHHHHHHhh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
+..||-|+-|+.|..+++.|+..++
T Consensus 438 ~L~yks~~~p~g~~~~~~~~~li~i 462 (541)
T COG0833 438 ELPYKSPFGPYGPIYGLILCILILI 462 (541)
T ss_pred hcCccCCCccHHHHHHHHHHHHHHH
Confidence 5779999999999999999997664
No 117
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=58.90 E-value=34 Score=37.26 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=21.1
Q ss_pred CCCccccCCchhhhHHHHHHHHHhh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
+..||.|+-|..|.++++..+++..
T Consensus 402 ~~p~~~~~~~~~~~~~~~~~~~~~~ 426 (478)
T TIGR00913 402 ELPYKSQTGPYGSYYALFFNILILI 426 (478)
T ss_pred cCCccCCCcchHHHHHHHHHHHHHH
Confidence 3569999999999999999887654
No 118
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=50.02 E-value=4.1e+02 Score=29.68 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC---CCCCCCC-chhHHHHHHHHHH
Q 007682 183 PCAAILVLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYE---LPTGYFP-FGVNGMLAGSATV 258 (593)
Q Consensus 183 ~~~~~i~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~---~~~~~~p-~g~~~~~~~~~~~ 258 (593)
+..+++.+++.+..++|+|.++++--+...+-.+++.++.+-+. ...+..... ..+.+.. ...+...-+....
T Consensus 256 lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl---~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqi 332 (629)
T KOG3659|consen 256 LCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGL---TLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQI 332 (629)
T ss_pred HHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcc---cccccccchhheecccHHHHhhHHHHHHHHHHH
Confidence 34555566667778899999999633333333222222222222 111111110 0011100 1122344455555
Q ss_pred HHHh-hhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 007682 259 FFAF-IGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVSIV 303 (593)
Q Consensus 259 ~~a~-~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~~~ 303 (593)
+++. .|+.....++.-.|- +.|.-|=.++..++..+.+++..++
T Consensus 333 ffslg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfv 377 (629)
T KOG3659|consen 333 FFSLGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFV 377 (629)
T ss_pred HhhcCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHH
Confidence 5554 788877777766554 3444444444444444444444433
No 119
>TIGR00909 2A0306 amino acid transporter.
Probab=48.67 E-value=68 Score=34.23 Aligned_cols=26 Identities=46% Similarity=1.027 Sum_probs=21.1
Q ss_pred CCccccCCchhhhHHHHHHHHHhhcC
Q 007682 567 GGFMCPFVPLLPIACILINVYLLINL 592 (593)
Q Consensus 567 ~~f~~P~vP~~P~~sI~~N~~Lm~~l 592 (593)
..||.|..|++|.+.+....+++...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (429)
T TIGR00909 382 RAFRCPLVPVLPVLVVSYCIYLLLNL 407 (429)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHc
Confidence 56999999999998888888776543
No 120
>PRK10238 aromatic amino acid transporter; Provisional
Probab=47.76 E-value=57 Score=35.29 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.7
Q ss_pred CCCccccCCchhhhHHHHHHHHHhh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
+..++.|+-|+.|.++++.+.+.++
T Consensus 393 ~~~~~~~~~p~~~~~~~~~~~~~~~ 417 (456)
T PRK10238 393 VTRFPALLYPLGNWICLLFMAAVLV 417 (456)
T ss_pred CCCCcCCCccHHHHHHHHHHHHHHH
Confidence 3458899999999999999887654
No 121
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=46.56 E-value=3.3e+02 Score=27.72 Aligned_cols=29 Identities=21% Similarity=0.565 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHH
Q 007682 93 GIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (593)
Q Consensus 93 ~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~ 130 (593)
++.++..++.| +||.+.+.++.+||...+
T Consensus 125 g~~g~~~~~~Y---------T~gP~~l~y~gLGE~~v~ 153 (304)
T PRK07419 125 VLLCCFLGYLY---------QGPPFRLGYQGLGEPLCF 153 (304)
T ss_pred HHHHHHHhhec---------cCCCcccCCCCchHHHHH
Confidence 33445555556 578999999999997543
No 122
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=46.48 E-value=72 Score=34.26 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=21.0
Q ss_pred CCccccCCchhhhHHHHHHHHHhh
Q 007682 567 GGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 567 ~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
..||.|+-|+.|.++++...+++.
T Consensus 379 rp~~~p~~~~~~~l~~~~~~~~l~ 402 (442)
T TIGR00908 379 RPYRTPGGILTPGVALVLACVALV 402 (442)
T ss_pred CCccCCCcchHHHHHHHHHHHHHH
Confidence 569999999999999999987754
No 123
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=44.91 E-value=67 Score=34.65 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=20.8
Q ss_pred CCCccccCCchhhhHHHHHHHHHhh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
+..+|.|+-|..|.++++.+.+++.
T Consensus 375 ~~~~~~~~~p~~~~~~i~~~~~~~~ 399 (446)
T PRK10197 375 EIRLRMWLYPWLTWLVIGFITFVLV 399 (446)
T ss_pred CCCCcCCCcchHHHHHHHHHHHHHH
Confidence 3578999999999999999976553
No 124
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=44.75 E-value=3.4e+02 Score=27.29 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHH
Q 007682 92 AGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (593)
Q Consensus 92 ~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~ 130 (593)
.++.++..++.| +||.+.+.++.+||..-+
T Consensus 111 lg~~g~~~~~~Y---------t~gP~~l~y~gLGE~~v~ 140 (285)
T TIGR02235 111 LVGLCCFLGYLY---------QGPPFRLGYQGLGEPICW 140 (285)
T ss_pred HHHHHHHHHHhh---------cCCCcccCCCCccHHHHH
Confidence 344466667777 678899999999997433
No 125
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=44.36 E-value=4.8e+02 Score=28.86 Aligned_cols=101 Identities=14% Similarity=0.006 Sum_probs=58.2
Q ss_pred cChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCchHHH
Q 007682 51 LTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEGVAW 130 (593)
Q Consensus 51 l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~~g~ 130 (593)
.+.+-+...-+.++.|.|..+.+.. +...+-+...+..+++++++-..-=...-+.|.=.+.-+.-+-+++-+|+..+.
T Consensus 52 tnk~vlfGhHFaaIAGAGPivGPvl-AAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~ 130 (575)
T COG1966 52 TNKWVLFGHHFASIAGAGPIVGPAL-AAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKV 130 (575)
T ss_pred CCchhhhHHHHHHHhccCcchhHHH-HHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHH
Confidence 3556677778888999999887754 334442444444455555444332222222222222335667888889998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 007682 131 LIGWALILEYTIGGSAVARGIS 152 (593)
Q Consensus 131 ~~gw~~~~~~~~~~a~~~~~~~ 152 (593)
+.....++--++..+..+...+
T Consensus 131 ~~~~~~l~iliiv~Avfa~vv~ 152 (575)
T COG1966 131 FFLLLALILLILVGAVFAAVIA 152 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7776655554554444443333
No 126
>PRK10249 phenylalanine transporter; Provisional
Probab=41.37 E-value=76 Score=34.34 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.6
Q ss_pred CCCccccCCchhhhHHHHHHHHHhh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
+..||.|+-|..|.+++.....+++
T Consensus 402 ~~p~~~~~~p~~~~~~l~~~~~~~v 426 (458)
T PRK10249 402 ETQFKALLYPFGNYLCIAFLGMILL 426 (458)
T ss_pred CCCccCCCccHHHHHHHHHHHHHHH
Confidence 4679999999999999988776654
No 127
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=41.29 E-value=85 Score=33.75 Aligned_cols=23 Identities=4% Similarity=0.154 Sum_probs=19.7
Q ss_pred ccccCCchhhhHHHHHHHHHhhc
Q 007682 569 FMCPFVPLLPIACILINVYLLIN 591 (593)
Q Consensus 569 f~~P~vP~~P~~sI~~N~~Lm~~ 591 (593)
++.|+-|++|+++++.+++++..
T Consensus 382 ~~~p~~~~~~~~~~~~~~~~~~~ 404 (445)
T PRK10644 382 KARPAYLAVTLIAFVYCIWAVVG 404 (445)
T ss_pred ccccchhHHHHHHHHHHHHHHHH
Confidence 45588899999999999999864
No 128
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=40.70 E-value=91 Score=33.43 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=17.9
Q ss_pred CCCCccccCCchhhhHHHHHHH
Q 007682 565 HAGGFMCPFVPLLPIACILINV 586 (593)
Q Consensus 565 ~~~~f~~P~vP~~P~~sI~~N~ 586 (593)
++..||.|+-|+...+.+..=.
T Consensus 395 ~~~~fkm~~~p~~~~l~l~fl~ 416 (462)
T COG1113 395 KKLKFKMPLYPFTNYLTLAFLA 416 (462)
T ss_pred cCcccccccccHHHHHHHHHHH
Confidence 4577999999999999886544
No 129
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=37.47 E-value=14 Score=32.40 Aligned_cols=7 Identities=14% Similarity=0.221 Sum_probs=2.7
Q ss_pred Hhhcccc
Q 007682 549 IVLTSIN 555 (593)
Q Consensus 549 ~~i~~~~ 555 (593)
+++++++
T Consensus 17 ~~~~~~~ 23 (130)
T PF12273_consen 17 FLFYCHN 23 (130)
T ss_pred HHHHHHH
Confidence 3333443
No 130
>PRK15049 L-asparagine permease; Provisional
Probab=35.78 E-value=1.2e+02 Score=33.27 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=20.7
Q ss_pred CCCccccCCchhhhHHHHHHHHHhh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
+..||.|.-|+.|.++++..+.++.
T Consensus 414 ~~pf~~~~~p~~~~~~l~~~~~~~~ 438 (499)
T PRK15049 414 DVSFKLPGAPFTSWLTLLFLLSVLV 438 (499)
T ss_pred CCCCcccCccHHHHHHHHHHHHHHH
Confidence 3569999999999999988876653
No 131
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=33.24 E-value=7e+02 Score=27.57 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhhccCC-Ccc-ccchHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 007682 85 LALSFLIAGIASAFSAFCYA-ELASRCPSA-GSA-YHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGS 161 (593)
Q Consensus 85 ~i~~~ii~~l~~l~~al~~a-el~s~~p~~-GG~-y~~~~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~ 161 (593)
+.++++.+.++.++.++++. .+.+.+... |-. -.+-+..+|++.+....-..++.-.+...+.. ....=+.+.+..
T Consensus 293 ~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~-~a~SR~v~afaR 371 (550)
T KOG1289|consen 293 IAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSL-TASSRLVYAFAR 371 (550)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHH-HHHHHHHhhhhc
Confidence 44456666777777777877 666666644 332 34778889999874333333333332222222 222223344544
Q ss_pred CCChhhhhhhccCCCCccchhHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007682 162 ADSLPFFMARQQIPGLGIIVDPCAAIL-VLIVTGLLCVGIKESTIAQAIVTTANVLAMLFVIIAGSY 227 (593)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~~l~~~G~k~~~~i~~~~~~~~li~~~~~~i~~~~ 227 (593)
+..+|..-.-.+.......| .-++.+ .++..++.+..+-....++.+++.+.+...+...+-.+.
T Consensus 372 Dg~LP~S~~~~~v~~~t~~P-~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~ 437 (550)
T KOG1289|consen 372 DGGLPFSKYLAKVNPQTKVP-LNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFC 437 (550)
T ss_pred cCCCCCcceeeecCCCCCCc-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 44444331111111111111 112221 122223333333344555666666666555554444443
No 132
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=32.69 E-value=1.1e+02 Score=27.78 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=37.9
Q ss_pred HHHHHHHhhhhhhhhHHHhHHHHHHhccCh----HHHHHHHHHHHHHHHHHHHHHHHhhhcc-C-CCccccch
Q 007682 54 PHLVAIGVGSTIGAGVYILVGTVAREHSGP----ALALSFLIAGIASAFSAFCYAELASRCP-S-AGSAYHYS 120 (593)
Q Consensus 54 ~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~----~~i~~~ii~~l~~l~~al~~ael~s~~p-~-~GG~y~~~ 120 (593)
..++..++=..+|.+.|.....+. ..... ++.+..-.+.+..-+.++.|+-|++.+- + .|+..-|-
T Consensus 64 Rm~~~~GiP~~lG~~~f~~~y~l~-~~~~~dvP~~~~~~~S~~~Fg~gllGisYGilSaSWD~~r~GSllG~~ 135 (153)
T PF11947_consen 64 RMAVFVGIPTALGVAVFVVFYYLK-SRQIVDVPPWAVLLVSLVFFGLGLLGISYGILSASWDPEREGSLLGWE 135 (153)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHH-hccccccCchHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCcccHH
Confidence 344444555556666676666543 22222 2333333344455558899999999994 4 68776554
No 133
>PRK10580 proY putative proline-specific permease; Provisional
Probab=32.47 E-value=1.7e+02 Score=31.51 Aligned_cols=25 Identities=20% Similarity=0.176 Sum_probs=21.8
Q ss_pred CCCccccCCchhhhHHHHHHHHHhh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLLI 590 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm~ 590 (593)
+..||.|.-|.++.+++...++++.
T Consensus 393 ~~~f~~~~~~~~~~~~~~~~~~~~~ 417 (457)
T PRK10580 393 ALKFKVPGGVATTIGGLIFLVFIIG 417 (457)
T ss_pred CCCcccCCccHHHHHHHHHHHHHHH
Confidence 3579999999999999999998764
No 134
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=31.91 E-value=5.4e+02 Score=25.85 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCccccchHHHhCch
Q 007682 92 AGIASAFSAFCYAELASRCPSAGSAYHYSYICVGEG 127 (593)
Q Consensus 92 ~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~~ 127 (593)
.+..++..+..| ++|.+.|-++.+|+.
T Consensus 110 l~~~ai~~~~~Y---------S~~p~rlk~~gl~d~ 136 (282)
T PRK13105 110 VLAVSVFAVVAY---------SAPGLRFKERPFLDS 136 (282)
T ss_pred HHHHHHHHHHHh---------cCCCccccccchHHH
Confidence 344555556666 355666666666655
No 135
>PRK10746 putative transport protein YifK; Provisional
Probab=31.36 E-value=2e+02 Score=31.19 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.7
Q ss_pred CCCccccCCchhhhHHHHHHHHHh
Q 007682 566 AGGFMCPFVPLLPIACILINVYLL 589 (593)
Q Consensus 566 ~~~f~~P~vP~~P~~sI~~N~~Lm 589 (593)
+..||.|+.|+.+.++++.++.++
T Consensus 395 ~~~~~~~~~p~~~~~~~~~~~~~~ 418 (461)
T PRK10746 395 SHPFRSILFPWANYLTMAFLICVL 418 (461)
T ss_pred CCCCcCCCccHHHHHHHHHHHHHH
Confidence 367999999999999999888764
No 136
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=28.41 E-value=2.5e+02 Score=23.74 Aligned_cols=17 Identities=41% Similarity=0.702 Sum_probs=13.4
Q ss_pred chhhhHHHHHHHHHhhc
Q 007682 575 PLLPIACILINVYLLIN 591 (593)
Q Consensus 575 P~~P~~sI~~N~~Lm~~ 591 (593)
-++|.+++++-++|+++
T Consensus 89 ~~ip~i~~i~~l~l~~~ 105 (120)
T PF05656_consen 89 LLIPIIGIIVLLYLLFL 105 (120)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 57788888888888764
No 137
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=27.35 E-value=2e+02 Score=21.18 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHH
Q 007682 253 AGSATVFFAFIGFDAVASTAEEVKNPQRDLPLGIGTALSICCALYMLVS 301 (593)
Q Consensus 253 ~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~ 301 (593)
..+...+|+|.|...-.+.-+|.++.+ |...+.+.++..++++...
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV~~L 48 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFVAGL 48 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHHHHH
Confidence 345567899999998888888887543 4555554444444444433
No 138
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.14 E-value=43 Score=29.33 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccCc
Q 007682 531 LLQLTLCGIGGALLLCGLIVLTSINQDE 558 (593)
Q Consensus 531 ~~~~~~~~i~~~l~~~~~~~i~~~~~~~ 558 (593)
|..+++++++++++++++..+.++|.++
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555666666666677777776544
No 139
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=24.47 E-value=9.1e+02 Score=26.02 Aligned_cols=95 Identities=12% Similarity=0.008 Sum_probs=62.0
Q ss_pred ChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHHHH
Q 007682 317 TPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALA 396 (593)
Q Consensus 317 ~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~ 396 (593)
.+..++.++..|+...+++........++....++...+..+.++-+.--.... +.+ +..=+++.+++...+.
T Consensus 105 ~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~-~~~f~iif~~i~~~~s 177 (437)
T KOG1303|consen 105 YRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLD-KQYFIIIFGLIVLPLS 177 (437)
T ss_pred CChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------ccc-ceehhhhHHHHHHHHH
Confidence 568888887766555777888888888888888888888887776543221110 112 3334556677777777
Q ss_pred HhhCHHHHHHHHHHHHHHHHHH
Q 007682 397 FFMDVSALAGMVSVGTLLAFTM 418 (593)
Q Consensus 397 ~~~~~~~l~~l~si~~l~~y~l 418 (593)
.+.+++.+.-+...+..++...
T Consensus 178 ~lp~~~~l~~~S~~~avmS~~~ 199 (437)
T KOG1303|consen 178 QLPNFHSLSYLSLVGAVMSTLY 199 (437)
T ss_pred HCCCcchhHHHHHHHHHHHHHH
Confidence 7888877666666665554433
No 140
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=23.29 E-value=2.5e+02 Score=30.16 Aligned_cols=23 Identities=17% Similarity=0.067 Sum_probs=17.8
Q ss_pred CCccccCCchhhhHHHHHHHHHh
Q 007682 567 GGFMCPFVPLLPIACILINVYLL 589 (593)
Q Consensus 567 ~~f~~P~vP~~P~~sI~~N~~Lm 589 (593)
..++.|+-|.+|.+++..+.+.+
T Consensus 396 ~~~~~~~~p~~~~~~~~~~~~~~ 418 (452)
T TIGR01773 396 IKIRMWLYPWLTWLVIIFICGIL 418 (452)
T ss_pred CCccCCCccHHHHHHHHHHHHHH
Confidence 35778889999998888777654
No 141
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=23.02 E-value=3.1e+02 Score=22.11 Aligned_cols=28 Identities=32% Similarity=0.712 Sum_probs=22.7
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHH
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVG 74 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~ 74 (593)
.--.+|+.|+..++.+..++.|.+....
T Consensus 13 i~~GlT~RQl~~l~~~~~~~~~~~~~~~ 40 (93)
T PF12666_consen 13 IFFGLTLRQLICLAIGALVGVGVYLLLW 40 (93)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456799999999999999888777553
No 142
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=21.16 E-value=2.2e+02 Score=27.15 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=34.1
Q ss_pred ccccChHHHHHHHhhhhh---hhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007682 48 AKNLTIPHLVAIGVGSTI---GAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCP 111 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~i---G~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p 111 (593)
.+.+++++++.++++..+ +.|+ .....|...+..-++.++.+++....=..++.++.
T Consensus 123 s~~i~~~e~l~L~iAlSiDalavG~-------s~~~~g~~~~~~~~~igivs~i~~~~G~~lG~~~~ 182 (206)
T TIGR02840 123 SGNISGKEALLLGIALSLDAFGAGI-------GASLLGLNPLATSILVAVMSFIFVSLGLFLGKKIS 182 (206)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHH-------HHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345899999999887652 2222 22334555555555566666665555555666654
No 143
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=21.10 E-value=8.7e+02 Score=27.21 Aligned_cols=32 Identities=9% Similarity=-0.011 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007682 331 ASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 331 ~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama 362 (593)
..-++..+.+.+.++++-+.+.+.+-+.+..=
T Consensus 333 l~GLfia~vfsA~LSsLSS~~NS~s~v~~eD~ 364 (585)
T KOG2349|consen 333 LRGLFIAVVFSAALSSLSSIFNSLSTVFLEDY 364 (585)
T ss_pred ccchhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33456666677777777777778887766653
Done!