Query 007682
Match_columns 593
No_of_seqs 220 out of 1778
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 07:52:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 3.8E-46 1.3E-50 401.1 43.3 364 47-431 6-380 (445)
2 3gia_A Uncharacterized protein 100.0 6.7E-46 2.3E-50 399.1 43.0 364 47-431 4-370 (444)
3 4djk_A Probable glutamate/gamm 100.0 3E-44 1E-48 393.2 36.0 372 44-432 6-398 (511)
4 2jln_A MHP1; hydantoin, transp 99.0 3.1E-06 1.1E-10 91.2 36.9 289 48-361 24-329 (501)
5 3dh4_A Sodium/glucose cotransp 97.9 0.021 7.3E-07 61.6 32.5 289 48-360 19-350 (530)
6 2xq2_A Sodium/glucose cotransp 97.8 0.029 1E-06 61.4 33.0 289 48-358 48-377 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.5 0.036 1.2E-06 59.2 26.4 241 52-296 10-289 (519)
8 2wsw_A BCCT family betaine/car 93.5 8.8 0.0003 40.4 32.3 87 333-425 410-501 (509)
9 4ain_A Glycine betaine transpo 85.9 38 0.0013 35.8 27.9 79 49-127 94-188 (539)
10 2ks1_B Epidermal growth factor 11.6 1.9E+02 0.0064 19.2 2.8 24 537-560 21-44 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=3.8e-46 Score=401.05 Aligned_cols=364 Identities=21% Similarity=0.314 Sum_probs=311.1
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCc
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~ 126 (593)
++|++++++++++++++++|+|+|..++.++ .+|+..+++|+++++..++.+++|+|+++++|++||.|.|+++.+||
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 83 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGP 83 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCC
Confidence 6789999999999999999999999988743 46888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 007682 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i 206 (593)
.+|++.+|.+++++....+..+...++++...++ ... .+....+++++++++++.+|++|+|...++
T Consensus 84 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~in~~g~~~~~~~ 150 (445)
T 3l1l_A 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFP------ILK-------DPWVLTITCVVVLWIFVLLNIVGPKMITRV 150 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCG------GGG-------SHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc------ccc-------ccHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 9999999999999998888877777776654332 110 012233568888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCc---hhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChh
Q 007682 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPF---GVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLP 283 (593)
Q Consensus 207 ~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~---g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip 283 (593)
+.+.+.++++.++.+++.++.....+++. +.+.|. ++.+++.++..++|+|.|+|.+++++||+|||+|++|
T Consensus 151 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip 225 (445)
T 3l1l_A 151 QAVATVLALIPIVGIAVFGWFWFRGETYM-----AAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVP 225 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCCCCCCC-----CC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhcc-----cccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccc
Confidence 99999999998888777776543222221 112222 3557888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHH
Q 007682 284 LGIGTALSICCALYMLVSIVIVGLVPYYEM-DPDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMA 362 (593)
Q Consensus 284 ~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l-~~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama 362 (593)
|+++.+.+++.++|++.+++.....|++++ +.++|..+++++.+++|+..++.++.+++.+++.++.+.+.+|++++||
T Consensus 226 ~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a 305 (445)
T 3l1l_A 226 IATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA 305 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998876 4467999999999899999999999999999999999999999999999
Q ss_pred hcCCCcccccccccccccchHHHHHHHHHHHHHHHhh-------CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007682 363 RDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFM-------DVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (593)
Q Consensus 363 ~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~-------~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~ 431 (593)
|||.+|++|+|+||+ ++|+++++++++++.++.+.. .++.+.++.+...++.|.+..++++++|+|+|
T Consensus 306 ~dg~lP~~~~~~~~~-~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 306 DDGLFPPIFARVNKA-GTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp HTTSSCGGGGCCCTT-CCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred hCCCCcHHHHhcCCC-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999976 999999999999887766542 36789999999999999999999999998765
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=6.7e-46 Score=399.07 Aligned_cols=364 Identities=22% Similarity=0.343 Sum_probs=320.9
Q ss_pred cccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCc
Q 007682 47 LAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (593)
Q Consensus 47 l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~ 126 (593)
.+|+++++|++++++++++|+|++..++... ..+|++++++|+++++..++.+++|+|+++++|++||.|.|+++.+||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 5689999999999999999999999988744 678899999999999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 127 GV-AWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 127 ~~-g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
++ +...+|.+|++|....+..+.+.++++...++... .+.....++++++++++.+|.+|+|...+
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPI-------------NTFNIAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC-------------CHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------------chHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 74 55668999999999999999999998887764221 01122356788888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCchhHHHHHHHHHHHHHhhhhhhHhhhhhhhhCCCCChhHH
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGFKTGWSGYELPTGYFPFGVNGMLAGSATVFFAFIGFDAVASTAEEVKNPQRDLPLG 285 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~P~r~ip~a 285 (593)
++.+.+.++++.++++++.++.....+++. +.+.|.++.+++.++..++|+|.|+|.+++++||+|||+|++||+
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~a 224 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVI-----PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRA 224 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTS-----CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcC-----CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHH
Confidence 999999999999988888887654333332 234566778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCC--CCChHHHHHHHcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHh
Q 007682 286 IGTALSICCALYMLVSIVIVGLVPYYEMD--PDTPISSAFASHGMHWASYVITIGAVTALCSTLMGSILPQPRILMAMAR 363 (593)
Q Consensus 286 i~~~~~i~~~~y~~~~~~l~~~~p~~~l~--~~~~~~~~~~~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~ 363 (593)
++.+..++.++|++.+++.....|++++. .+.++.++++...+++...++.++.+++.+++.++.+.+.+|++++|||
T Consensus 225 i~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 304 (444)
T 3gia_A 225 IFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAK 304 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877753 3457788888888889889999999999999999999999999999999
Q ss_pred cCCCcccccccccccccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 007682 364 DGLLPPFFSDVNKTTQVPVKSTIVTGIVAAALAFFMDVSALAGMVSVGTLLAFTMVAISVLILRYVPP 431 (593)
Q Consensus 364 dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~il~~~~~~~~l~~l~si~~l~~y~l~~~~~l~lr~~~~ 431 (593)
||.+|++|+|+|+ +.|.++++++++++.++.+..+++.+.++.+++.++.|.+++++.+++|+++|
T Consensus 305 dg~lP~~f~~~~~--~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 305 DGELPEFFERKVW--FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp HSSCCSSCCTTSC--CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred CCCCCHHHhCCCC--CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999999985 46999999999999998888999999999999999999999999999887654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=3e-44 Score=393.22 Aligned_cols=372 Identities=20% Similarity=0.237 Sum_probs=282.9
Q ss_pred ccccccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHH-HHHHHHHHHHhh--hccCCCccccch
Q 007682 44 HQKLAKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIAS-AFSAFCYAELAS--RCPSAGSAYHYS 120 (593)
Q Consensus 44 ~~~l~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~-l~~al~~ael~s--~~p~~GG~y~~~ 120 (593)
+++++|+++++++++++++.++|.. ..+. ...+|+..++.++++++.. ++.+++|+|+++ ++| +||.|.|+
T Consensus 6 ~~~~~r~l~~~~~~~l~~~~~ig~~--~~~~---~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~ 79 (511)
T 4djk_A 6 QTGKAKQLTLLGFFAITASMVMAVY--EYPT---FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWV 79 (511)
T ss_dssp ------CCCHHHHHHHTGGGGCCGG--GHHH---HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHH
T ss_pred cCccCccccHHHHHHHHHHHHHhhc--hhHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhH
Confidence 3458899999999999999998743 3322 3568998888888877765 569999999999 999 99999999
Q ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhh
Q 007682 121 YICVGEGVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGI 200 (593)
Q Consensus 121 ~~~lG~~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~ 200 (593)
++.+||++|+++||.+|++++...++.....+.++..++. .|.. +...+...+++++++++++.+|++|+
T Consensus 80 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~------~~~~~~~~~~~~~~~~~~~~in~~g~ 149 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WPAL------NEDPITKTIAALIILWALALTQFGGT 149 (511)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CGGG------TSCSSHHHHHHHHHHHHHHHHHHTCS
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cccc------ccCcHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999888887777766654321 1211 11223344578888889999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhhccccCCCCC-CCCCCCCCch-hHHHHHHHHHHHHHhhhhhhHhhhhhhhhC
Q 007682 201 KESTIAQAIVTTANVLA-MLFVIIAGSYLGFKTGWSGY-ELPTGYFPFG-VNGMLAGSATVFFAFIGFDAVASTAEEVKN 277 (593)
Q Consensus 201 k~~~~i~~~~~~~~li~-~~~~~i~~~~~~~~~~~~~~-~~~~~~~p~g-~~~~~~~~~~~~~a~~G~e~~a~~~~E~k~ 277 (593)
|.+.+++.+.+.++++. ++++++.++......+.... .+.+.+.|.. ..+.+.++...+|+|.|+|.+++++||+||
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 99999999988775543 45555555443221111000 0112223321 122334566789999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHH----Hcc--hhHHHHHHHHHHHHHHHHHHhhhh
Q 007682 278 PQRDLPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFA----SHG--MHWASYVITIGAVTALCSTLMGSI 351 (593)
Q Consensus 278 P~r~ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~----~~g--~~~~~~iv~i~~~~~~~~s~~~~~ 351 (593)
|+|++||+++.+..++.++|++..+++...+|+++...+++..+.+. ..| .+|+..++.+..+++.+++.++.+
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWI 309 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988766655544443 345 578889999999999999999999
Q ss_pred cchhHHHHHHHhcCCCcccccccccccccchHHHHHHHHHHHH-HHHhhC--------HHHHHHHHHHHHHHHHHHHHHH
Q 007682 352 LPQPRILMAMARDGLLPPFFSDVNKTTQVPVKSTIVTGIVAAA-LAFFMD--------VSALAGMVSVGTLLAFTMVAIS 422 (593)
Q Consensus 352 ~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~~~~~~l~~i-l~~~~~--------~~~l~~l~si~~l~~y~l~~~~ 422 (593)
.+.+|++++|||||.+|++|+|+||+ ++|+++++++.++..+ +..+.+ ++.+.++.+++.++.|.+..++
T Consensus 310 ~~~sR~l~a~ardg~lP~~~~~~~~~-~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~ 388 (511)
T 4djk_A 310 VGPSRGMYVTAQKNLLPAAFAKMNKN-GVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIG 388 (511)
T ss_dssp THHHHHTCHHHHGGGCSSSCCCCCSS-SCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHHhcCCC-CCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986 9999999998544333 333444 5789999999999999999999
Q ss_pred HHHHhcCCCC
Q 007682 423 VLILRYVPPD 432 (593)
Q Consensus 423 ~l~lr~~~~~ 432 (593)
++++|+++++
T Consensus 389 ~~~~r~~~~~ 398 (511)
T 4djk_A 389 YIVLVLKHPD 398 (511)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 9999988764
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.96 E-value=3.1e-06 Score=91.19 Aligned_cols=289 Identities=9% Similarity=-0.071 Sum_probs=151.2
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCc-cccchHHHhCc
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLIAGIASAFSAFCYAELASRCPSAGS-AYHYSYICVGE 126 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii~~l~~l~~al~~ael~s~~p~~GG-~y~~~~~~lG~ 126 (593)
+|+.++++...+=++..+..+.+..-+... . |.+...+++...+..++..+..+-.+..-|+.|- .....+..+|+
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~--~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~ 100 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMT--S-SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGI 100 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHT--T-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHh--c-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcch
Confidence 477899999999888888877776554422 2 5443333333333333333333333333344443 44488888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHHH
Q 007682 127 GVAWLIGWALILEYTIGGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTIA 206 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~i 206 (593)
+.+.+......+..+.+.+......++.+...+......+. ..+..+++.++...+...|.|...++
T Consensus 101 ~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~-------------~~v~~~i~~~l~~~~~~~G~~~i~~~ 167 (501)
T 2jln_A 101 RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN-------------LPLWIVIFGAIQVVTTFYGITFIRWM 167 (501)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------HHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-------------HHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99988888887777777776665556555554420000010 01122334445666678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCC-CCCCCCCCCchhHHHHHHHHHH-HHHhhhhhhHhhhhhhhhCCCCC---
Q 007682 207 QAIVTTANVLAMLFVIIAGSYLGFKTGWSG-YELPTGYFPFGVNGMLAGSATV-FFAFIGFDAVASTAEEVKNPQRD--- 281 (593)
Q Consensus 207 ~~~~~~~~li~~~~~~i~~~~~~~~~~~~~-~~~~~~~~p~g~~~~~~~~~~~-~~a~~G~e~~a~~~~E~k~P~r~--- 281 (593)
+.+...+.++..+.+.+..+.....+ ... ...++. ....+++.++..+ .+...+.-..+.++.+.|++++.
T Consensus 168 ~~~~~p~~~i~~i~~~~~~l~~~g~~-~~~~~~~~~~---~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~ 243 (501)
T 2jln_A 168 NVFASPVLLAMGVYMVYLMLDGADVS-LGEVMSMGGE---NPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASRE 243 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHTTCCCS---SCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCc-chhhhccCCc---cchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcccccc
Confidence 99988888877766666554432210 000 010111 1112244433322 22224445577888888886541
Q ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHHHcchh-HHHHHHH-HHHHHHHHHHHh-hh
Q 007682 282 --------LPLGIGTALSICCALYMLVSIVIVGLVPYYEMDPDTPISSAFASHGMH-WASYVIT-IGAVTALCSTLM-GS 350 (593)
Q Consensus 282 --------ip~ai~~~~~i~~~~y~~~~~~l~~~~p~~~l~~~~~~~~~~~~~g~~-~~~~iv~-i~~~~~~~~s~~-~~ 350 (593)
.-.+...+..+...+..+..+.+.... ...+|.....+...++ ++..+.. +..+++..++-. +.
T Consensus 244 ~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~-----~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n 318 (501)
T 2jln_A 244 GQTKADARYATAQWLGMVPASIIFGFIGAASMVLV-----GEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAAN 318 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred chhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223333333333333222222222211 2234544333323222 2245555 666666665554 35
Q ss_pred hcchhHHHHHH
Q 007682 351 ILPQPRILMAM 361 (593)
Q Consensus 351 ~~~~sR~l~am 361 (593)
.++.+--+.++
T Consensus 319 ~ys~~~~l~~~ 329 (501)
T 2jln_A 319 LLSPAYTLCST 329 (501)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666555544
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=97.89 E-value=0.021 Score=61.60 Aligned_cols=289 Identities=12% Similarity=0.066 Sum_probs=133.4
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCc
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~ 126 (593)
.|++++|-..+--+++.+++..+......++. .|.. ..+.|. +++...+.+..+...-.+. +.-..++|.++-+|+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 48899998888877888887766655554443 3544 222222 2222233333333333332 234688899999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHH--HHHHHHhhHHH
Q 007682 127 GVAWLIGWALILEYTI-GGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIV--TGLLCVGIKES 203 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~-~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--~~l~~~G~k~~ 203 (593)
+...+.+....+.+.. ..++...+.+..+...++ .+.+ .++++..++ ......|+|..
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G----i~~~---------------~~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLM---------------YSILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----CCHH---------------HHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHH---------------HHHHHHHHHHHHHHHhcchHHH
Confidence 8777666655444432 233333333334444442 1211 122222222 22234677766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc-c---------------ccCCCCCCCC--CCCCC-chhHHHHHHHHHHHHHhhh
Q 007682 204 TIAQAIVTTANVLAMLFVIIAGSYLG-F---------------KTGWSGYELP--TGYFP-FGVNGMLAGSATVFFAFIG 264 (593)
Q Consensus 204 ~~i~~~~~~~~li~~~~~~i~~~~~~-~---------------~~~~~~~~~~--~~~~p-~g~~~~~~~~~~~~~a~~G 264 (593)
.+...+=..++++..+++.+.++... . ...++....+ +.+.+ .++..++.+.......|.|
T Consensus 157 ~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g 236 (530)
T 3dh4_A 157 VWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWG 236 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHc
Confidence 66555555555544433333322210 0 0011100000 01100 1222122222122234445
Q ss_pred hhh-HhhhhhhhhCCCCChhHHHHHHHHHHHHHHH---HHHHHHHhhcc----------------CCCCCCCChHHHHHH
Q 007682 265 FDA-VASTAEEVKNPQRDLPLGIGTALSICCALYM---LVSIVIVGLVP----------------YYEMDPDTPISSAFA 324 (593)
Q Consensus 265 ~e~-~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~---~~~~~l~~~~p----------------~~~l~~~~~~~~~~~ 324 (593)
.+- ...-.=..||+ |+..|+.+++........+ +..++.....+ .+..+++..++...+
T Consensus 237 ~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~ 315 (530)
T 3dh4_A 237 FNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ 315 (530)
T ss_dssp TTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT
T ss_pred CCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH
Confidence 432 22222334664 4567777776654433221 11111111111 111233445555554
Q ss_pred HcchhHHHHHHHHHHHHHHHHHHhhhhcchhHHHHH
Q 007682 325 SHGMHWASYVITIGAVTALCSTLMGSILPQPRILMA 360 (593)
Q Consensus 325 ~~g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l~a 360 (593)
...+++.-++..+.+.+..++..+.+.+.+-.+..
T Consensus 316 -~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~ 350 (530)
T 3dh4_A 316 -FLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTM 350 (530)
T ss_dssp -TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 55677788888888888888888888777766433
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.84 E-value=0.029 Score=61.41 Aligned_cols=289 Identities=13% Similarity=0.081 Sum_probs=135.2
Q ss_pred ccccChHHHHHHHhhhhhhhhHHHhHHHHHHhccChH-HHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccchHHHhCc
Q 007682 48 AKNLTIPHLVAIGVGSTIGAGVYILVGTVAREHSGPA-LALSFLIAGIASAFSAFCYAELASRCPSAGSAYHYSYICVGE 126 (593)
Q Consensus 48 ~r~l~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~-~i~~~ii~~l~~l~~al~~ael~s~~p~~GG~y~~~~~~lG~ 126 (593)
.|++++|-..+--+++..++..+......+.. .|.. ..+.|. +.+..++.++.+...-.+. +.-..++|.++=+|+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 47888887666555666777666555544443 3543 222222 2223333344444443343 234688898888998
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHccCCChhhhhhhccCCCCccchhHHHHHHHHHHHHHHHHhhHHHHH
Q 007682 127 GVAWLIGWALILEYTI-GGSAVARGISPNLAMLFGSADSLPFFMARQQIPGLGIIVDPCAAILVLIVTGLLCVGIKESTI 205 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~-~~a~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~G~k~~~~ 205 (593)
+...+.+....+.+.+ ..+....+.+..++..++ .+.+.. ..+..++........|+|...+
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G----i~~~~~-------------i~i~~~i~~~Yt~~GGl~av~~ 187 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMYS-------------ILGLALFALVYSIYGGLSAVVW 187 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC----CCHHHH-------------HHHHHHHHHHHHHTTC---CCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccHHHH-------------HHHHHHHHHHHHHhcchHHHHH
Confidence 8776666554443333 344444444455555553 121110 1112222233444568887666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc----------------ccCCCCCCCCCC--CCC-chhHHHHHHHHHHHHHhhhhh
Q 007682 206 AQAIVTTANVLAMLFVIIAGSYLGF----------------KTGWSGYELPTG--YFP-FGVNGMLAGSATVFFAFIGFD 266 (593)
Q Consensus 206 i~~~~~~~~li~~~~~~i~~~~~~~----------------~~~~~~~~~~~~--~~p-~g~~~~~~~~~~~~~a~~G~e 266 (593)
...+=..++++..+++.+.++.... .+.++.....++ +.. .++.-++.+.......+.|.+
T Consensus 188 TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 267 (593)
T 2xq2_A 188 TDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFN 267 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 5555555555444333333222100 011111000000 000 112212111212233344554
Q ss_pred -hHhhhhhhhhCCCCChhHHHHHHHHHHHHHHHHHH---HHHHhh-cc--------------CCCC-CCCChHHHHHHHc
Q 007682 267 -AVASTAEEVKNPQRDLPLGIGTALSICCALYMLVS---IVIVGL-VP--------------YYEM-DPDTPISSAFASH 326 (593)
Q Consensus 267 -~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~y~~~~---~~l~~~-~p--------------~~~l-~~~~~~~~~~~~~ 326 (593)
....-.=+.||+ |+..|+.+.+.+......++.. ++.... .+ ..++ +++..++... +.
T Consensus 268 q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~ 345 (593)
T 2xq2_A 268 QYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QF 345 (593)
T ss_dssp CSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HT
T ss_pred hHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HH
Confidence 233444466775 5677887776655443333211 111111 00 1112 2344455555 66
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhcchhHHH
Q 007682 327 GMHWASYVITIGAVTALCSTLMGSILPQPRIL 358 (593)
Q Consensus 327 g~~~~~~iv~i~~~~~~~~s~~~~~~~~sR~l 358 (593)
..+++..++..+.+.+..++..+.+.+.+-.+
T Consensus 346 lp~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 346 LPVGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888888777777654
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.51 E-value=0.036 Score=59.23 Aligned_cols=241 Identities=16% Similarity=0.161 Sum_probs=122.9
Q ss_pred ChHHHHHHHhhhhhhhhHHHhHHHHHHhccChHHHHHHHH-HHHHHHHHH---HHHHHHhhhccCCCccccchHHHhCc-
Q 007682 52 TIPHLVAIGVGSTIGAGVYILVGTVAREHSGPALALSFLI-AGIASAFSA---FCYAELASRCPSAGSAYHYSYICVGE- 126 (593)
Q Consensus 52 ~~~~~~~l~i~~~iG~G~~~~~~~v~~~~~G~~~i~~~ii-~~l~~l~~a---l~~ael~s~~p~~GG~y~~~~~~lG~- 126 (593)
+-.+-++-++|+.+|.|..-..+..+.+++|.+-++.+++ ..++.+|.. ++.++++++..+.|..-.|-+. ..+
T Consensus 10 sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l-~~~~ 88 (519)
T 2a65_A 10 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLL-WRNR 88 (519)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHH-SCSH
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHh-cCCc
Confidence 5577888889999999988888888888988875555555 333445443 3444444334444444444332 121
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHH-HHHH-HHHHccC----C-Ch--h-------hhhhhc-cCC-------CCccc
Q 007682 127 GVAWLIGWALILEYTIGGSAV--ARGI-SPNL-AMLFGSA----D-SL--P-------FFMARQ-QIP-------GLGII 180 (593)
Q Consensus 127 ~~g~~~gw~~~~~~~~~~a~~--~~~~-~~~i-~~~~~~~----~-~~--~-------~~~~~~-~~~-------~~~~~ 180 (593)
.+. ..||...+........+ ..++ ..|+ .+..+.. . +. . .+..+. +.+ ...+.
T Consensus 89 ~~~-giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~~~~ 167 (519)
T 2a65_A 89 FAK-ILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLF 167 (519)
T ss_dssp HHH-HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHH
T ss_pred CCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCccHH
Confidence 122 23333222111111111 1111 1122 2222210 0 00 0 111111 111 00111
Q ss_pred hhHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----ccCCCCCCCCCCCCCc-hhHHHHH
Q 007682 181 VDPCAAILVLIVTGLLCVGI-KESTIAQAIVTTANVLAMLFVIIAGSYLGF-----KTGWSGYELPTGYFPF-GVNGMLA 253 (593)
Q Consensus 181 ~~~~~~~i~~l~~~l~~~G~-k~~~~i~~~~~~~~li~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~p~-g~~~~~~ 253 (593)
.-+.-++..+++..+..+|+ |...|.++++.....++++++.+-++.... ..+...... +++... ....+..
T Consensus 168 ~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~-Pd~s~L~~~~vw~~ 246 (519)
T 2a65_A 168 AYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWT-PDFEKLKDPGVWIA 246 (519)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS-CCTTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc-CCHHHhCCHHHHHH
Confidence 21223444455666677899 778999988888877777776665554322 000000000 111111 1234677
Q ss_pred HHHHHHHHh-hhhhhHhhhhhhhhCCCCChhHHHHHHHHHHHHH
Q 007682 254 GSATVFFAF-IGFDAVASTAEEVKNPQRDLPLGIGTALSICCAL 296 (593)
Q Consensus 254 ~~~~~~~a~-~G~e~~a~~~~E~k~P~r~ip~ai~~~~~i~~~~ 296 (593)
+...++|+. .|+....+++.-.|+ +.|++|..+.....-...
T Consensus 247 A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~ 289 (519)
T 2a65_A 247 AVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKA 289 (519)
T ss_dssp HHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHH
Confidence 788889998 688888888888775 567888765555554443
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=93.49 E-value=8.8 Score=40.41 Aligned_cols=87 Identities=11% Similarity=0.051 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHhhhhcchhHHHHHHHhcCCCcccccccccccccchHHH--HHHHHHHHHHHHhhCHHH---HHHH
Q 007682 333 YVITIGAVTALCSTLMGSILPQPRILMAMARDGLLPPFFSDVNKTTQVPVKST--IVTGIVAAALAFFMDVSA---LAGM 407 (593)
Q Consensus 333 ~iv~i~~~~~~~~s~~~~~~~~sR~l~ama~dg~lP~~~~~~n~~~~~P~~a~--~~~~~l~~il~~~~~~~~---l~~l 407 (593)
.+..+..++......+++.++.+-++-.++..|.-+ +.|+ ..+.+.. ++.++++.++.+.+.++. ..-+
T Consensus 410 ~i~~~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~----~~~p--~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii 483 (509)
T 2wsw_A 410 TATMWGFFILCFIATVTLINACSYTLAMSTCRSMKE----GADP--PLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIA 483 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCT----TCCC--CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHcCCCCC----CCCC--ChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344455555555667777888899998888776311 1222 2233333 244555555555554444 4444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007682 408 VSVGTLLAFTMVAISVLI 425 (593)
Q Consensus 408 ~si~~l~~y~l~~~~~l~ 425 (593)
.++...+...+++.+.++
T Consensus 484 ~alPf~~v~l~~~~sl~k 501 (509)
T 2wsw_A 484 GGCPLFFVNIMVTLSFIK 501 (509)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 444444444444444444
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=85.91 E-value=38 Score=35.78 Aligned_cols=79 Identities=10% Similarity=0.076 Sum_probs=42.9
Q ss_pred cccChHHHHHHHhhhhhhhhHHHhH--HHHHHhcc---C----------hHHHHHHHH-HHHHHHHHHHHHHHHhhhccC
Q 007682 49 KNLTIPHLVAIGVGSTIGAGVYILV--GTVAREHS---G----------PALALSFLI-AGIASAFSAFCYAELASRCPS 112 (593)
Q Consensus 49 r~l~~~~~~~l~i~~~iG~G~~~~~--~~v~~~~~---G----------~~~i~~~ii-~~l~~l~~al~~ael~s~~p~ 112 (593)
.+.|.+.-.+|-+++-+|.|+.... ..+.+-.. | ....+-|-+ +..++.+.+++++-+.=|..+
T Consensus 94 PefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~~ 173 (539)
T 4ain_A 94 PEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVGR 173 (539)
T ss_dssp CSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTCC
T ss_pred CCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCCC
Confidence 4588999999999988999854322 22222111 0 012333434 445555666666665555444
Q ss_pred CCccccchHHHhCch
Q 007682 113 AGSAYHYSYICVGEG 127 (593)
Q Consensus 113 ~GG~y~~~~~~lG~~ 127 (593)
....-+-.+-.+|++
T Consensus 174 pl~iss~l~PllG~r 188 (539)
T 4ain_A 174 KQLLSSAFVPLIGEK 188 (539)
T ss_dssp CSCTTGGGHHHHHHH
T ss_pred CCcHHHHhHhhcCCC
Confidence 444444445555654
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=11.55 E-value=1.9e+02 Score=19.19 Aligned_cols=24 Identities=8% Similarity=-0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcccccCccc
Q 007682 537 CGIGGALLLCGLIVLTSINQDEAR 560 (593)
Q Consensus 537 ~~i~~~l~~~~~~~i~~~~~~~~~ 560 (593)
+.+...+.+...+++.+++|++||
T Consensus 21 v~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 21 LLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred HHHHHHHHHHHHHHhhhhHhhccC
Done!