BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007684
(593 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255570201|ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus communis]
gi|223534642|gb|EEF36338.1| multidrug resistance pump, putative [Ricinus communis]
Length = 589
Score = 797 bits (2059), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/586 (69%), Positives = 470/586 (80%), Gaps = 1/586 (0%)
Query: 1 MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTY-RSLLCWHMHSFTKPITDIKQNR 59
MLRG+ PSL R SP +F +KI Q+N HT R L +H + F KP+ +I+ +R
Sbjct: 1 MLRGSSFAPSLNRASPLFSFFTKIPFFSSFQNNFHTIRRPFLHYHYYVFPKPVCNIQASR 60
Query: 60 FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
F + C+ A S K ++ESSA +SNK+KKKAR+ESPEGVLR K+D CSK G+
Sbjct: 61 FCMERRVQFCSSALSAKPQIHESSALAAKKVSNKAKKKARQESPEGVLRSKIDNCSKHGN 120
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
+ EALRLYD+AR NG+ L+QHHYNVLLY+CS E NG E SN+ KRGFEIFQ
Sbjct: 121 LVEALRLYDEARINGVQLNQHHYNVLLYLCSSGSSVELGGNGANEKASNMQFKRGFEIFQ 180
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
QM+ DKV PNEATFT+ ARLA+A EDPEMAFDL+KQMK F I PKLRSYGPALFGFCK G
Sbjct: 181 QMVIDKVPPNEATFTNAARLAIAMEDPEMAFDLIKQMKCFDILPKLRSYGPALFGFCKKG 240
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
D+AY VDAHM ESGV+PEEPELSALLKLSVD K+ DKVYE+LHRLR VRQV+E+T
Sbjct: 241 MADRAYAVDAHMAESGVMPEEPELSALLKLSVDIKRADKVYEMLHRLRATVRQVTETTID 300
Query: 300 IIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCC 359
IIE WF S DA++IG WDVSKVREG+VRGGGGWHGQGWLGSG+WRV RTQID VC
Sbjct: 301 IIEAWFKSEDASKIGEEKWDVSKVREGVVRGGGGWHGQGWLGSGQWRVVRTQIDAKAVCN 360
Query: 360 SCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGL 419
SC+E+LVCIDIDP ETENFA+SL+NLACQREV++DF +FQEWL +HGPFDAVIDGAN+GL
Sbjct: 361 SCSEKLVCIDIDPSETENFATSLTNLACQREVKADFVRFQEWLQKHGPFDAVIDGANLGL 420
Query: 420 VNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGAL 479
+NQ NFSF QLNTVV++LRQMSPSKR+PL+ILH+ RV+GGPAQ P N KLL+ W+ GAL
Sbjct: 421 INQTNFSFRQLNTVVSKLRQMSPSKRLPLIILHRSRVTGGPAQNPNNMKLLEFWKKSGAL 480
Query: 480 YTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDG 539
Y TP GSNDDWYWLYA V+C LLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RLSVSR G
Sbjct: 481 YATPTGSNDDWYWLYAAVSCNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLSVSRSG 540
Query: 540 LNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVK 585
+ L MPPPYSIVIQESENGSWHVP I+ DDLE PRQWLCA+R R K
Sbjct: 541 IALHMPPPYSIVIQESENGSWHVPTISEDDLETPRQWLCASRTRNK 586
>gi|225447818|ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Vitis vinifera]
Length = 526
Score = 773 bits (1997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/518 (73%), Positives = 435/518 (83%), Gaps = 6/518 (1%)
Query: 71 LAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA 130
LA S + S+ TMSNK++KKARRESPEGVLR KLDMCSKRGDV EALRLYD+A
Sbjct: 10 LALSATNKYIPESSAVAETMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEALRLYDEA 69
Query: 131 RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE 190
RS G+ LSQHHYNVLLY+CSC S NGD EN NL LKRGFEIF+QM D ++PNE
Sbjct: 70 RSRGVPLSQHHYNVLLYLCSC-----SGSNGD-ENVVNLALKRGFEIFKQMGVDGIEPNE 123
Query: 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250
ATFTS ARLA A EDPEMAF+LVKQMKS GIPPKLRSYGP LFGFCK G+ D+AYEVDAH
Sbjct: 124 ATFTSAARLACAMEDPEMAFNLVKQMKSCGIPPKLRSYGPPLFGFCKKGDADRAYEVDAH 183
Query: 251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
M ESGVV EEPEL ALL LSV++++VD+VYE++HRLR VRQVSEST +++E WF+S DA
Sbjct: 184 MMESGVVAEEPELCALLGLSVESRRVDRVYEMVHRLRASVRQVSESTAEVVERWFNSEDA 243
Query: 311 AEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDI 370
A +G NWDV KVREG+V+GGGGWHGQGWLG GKW+V RT++DE GVC SC E+LVCIDI
Sbjct: 244 AGVGEENWDVGKVREGVVKGGGGWHGQGWLGKGKWKVVRTEMDEAGVCQSCGEKLVCIDI 303
Query: 371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQL 430
DPRETENFASSL+ LACQREV++DF +FQEWL RHGPFDAV+DGANV L+NQ +FSF++L
Sbjct: 304 DPRETENFASSLTKLACQREVKADFVQFQEWLQRHGPFDAVVDGANVSLINQKSFSFFEL 363
Query: 431 NTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDW 490
N+VVNRLRQ+SPSKR+PLVILH+ RV+GGPAQ P NKKL++ W+ GALY TP GSNDDW
Sbjct: 364 NSVVNRLRQISPSKRLPLVILHRSRVTGGPAQNPNNKKLIESWKKSGALYATPAGSNDDW 423
Query: 491 YWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSI 550
YWLYA VNC LLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RL+++R G L MPPPYSI
Sbjct: 424 YWLYAAVNCNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTITRRGPVLHMPPPYSI 483
Query: 551 VIQESENGSWHVPVITGDDLEAPRQWLCATRARVKSLH 588
VIQESE GSWHVP +TGDDLE PRQWLCATR R H
Sbjct: 484 VIQESEQGSWHVPTVTGDDLETPRQWLCATRTRKNHRH 521
>gi|225462213|ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Vitis vinifera]
Length = 895
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/575 (66%), Positives = 446/575 (77%), Gaps = 17/575 (2%)
Query: 15 SPFLTFLSKISL-PLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAF 73
+P L + L PL+H C H H + ++R + + LA
Sbjct: 332 TPILCHVGHTRLRPLLHG----------CSHHHFKPTTYSPYIKDRIFMNKSAHFSNLAL 381
Query: 74 SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133
S + S+ TMSNK++KKARRESPEGVLR KLDMCSKRGDV EALRLYD+ARS
Sbjct: 382 SATNKYIPESSAAAKTMSNKARKKARRESPEGVLRFKLDMCSKRGDVVEALRLYDEARSL 441
Query: 134 GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF 193
G+ LSQH+YNVLLY+CSC S NGD EN NL LKRGFEIF+QM D ++PNEATF
Sbjct: 442 GVPLSQHNYNVLLYLCSC-----SGSNGD-ENVVNLALKRGFEIFKQMGVDGIEPNEATF 495
Query: 194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE 253
TS ARLA A EDPEMAF+LVKQMKS GIPPKLRSYGP LFGFCK G+ ++AYEVDAHM E
Sbjct: 496 TSAARLACAMEDPEMAFNLVKQMKSCGIPPKLRSYGPPLFGFCKKGDANRAYEVDAHMVE 555
Query: 254 SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEI 313
SGVV EEPEL ALL LSV+++ VD+VYE++HRLR VRQVSEST +++E WF+S DAA +
Sbjct: 556 SGVVAEEPELCALLGLSVESRWVDQVYEMMHRLRASVRQVSESTAEVVERWFNSEDAAGV 615
Query: 314 GVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPR 373
G NWDV KVREG+V+GGGGWHGQGWLG GKW+V RT++DE GVC SC E+LV IDIDPR
Sbjct: 616 GEENWDVGKVREGVVKGGGGWHGQGWLGKGKWKVGRTEMDEAGVCQSCGEKLVGIDIDPR 675
Query: 374 ETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTV 433
ETENFASSL+ LACQREV++DF +FQEWL HGPFDAV+DGANV L+NQ +FSF++LN+V
Sbjct: 676 ETENFASSLTKLACQREVKADFVQFQEWLQWHGPFDAVVDGANVSLINQKSFSFFELNSV 735
Query: 434 VNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWL 493
VN LRQ+SPSK++PLVILH+ RV+GGPAQ P N+KL+ W+ GALY TP GSNDDWYWL
Sbjct: 736 VNCLRQISPSKQLPLVILHRSRVTGGPAQNPNNEKLIQSWKKSGALYATPAGSNDDWYWL 795
Query: 494 YATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQ 553
YA VN LLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RL+++R G L MPPPYSIVIQ
Sbjct: 796 YAAVNGNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTMTRRGPVLHMPPPYSIVIQ 855
Query: 554 ESENGSWHVPVITGDDLEAPRQWLCATRARVKSLH 588
ESE GSWHVP + GDDLE PRQWLCATR R H
Sbjct: 856 ESEQGSWHVPTVIGDDLETPRQWLCATRTRKNHRH 890
>gi|224077472|ref|XP_002305261.1| predicted protein [Populus trichocarpa]
gi|222848225|gb|EEE85772.1| predicted protein [Populus trichocarpa]
Length = 516
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/514 (72%), Positives = 412/514 (80%), Gaps = 8/514 (1%)
Query: 68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLY 127
C A S S +E A +S + KKKARR++PEGVLR KLDMCSK GDV E LRLY
Sbjct: 7 FCNSAISATSQSDE-KAVGGNVVSKRLKKKARRDAPEGVLRFKLDMCSKVGDVVEGLRLY 65
Query: 128 DDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD 187
D+AR NG+ L+QHHYNV+LY+CS G ENG +D L KRGFEIFQQMI DKV
Sbjct: 66 DEARRNGVELNQHHYNVMLYLCSQNRG----ENG---SDLKLACKRGFEIFQQMIIDKVP 118
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
PNEATFT+ ARLA EDPEMAFDLVKQMK FGI PKLRSYGP LFGFCK G DKAYEV
Sbjct: 119 PNEATFTNAARLASVMEDPEMAFDLVKQMKGFGIMPKLRSYGPPLFGFCKKGMVDKAYEV 178
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDS 307
DAHM ESGVV EEPELS+LLKLS D DK+YE+LHRLRT VRQV EST +IEDWF S
Sbjct: 179 DAHMIESGVVAEEPELSSLLKLSADVNNADKMYELLHRLRTSVRQVMESTVGVIEDWFKS 238
Query: 308 VDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC 367
AA+IG +WDV KV+EG+VRGGGGWHGQGWLG G+WRV RTQ+D+ GVC SC ERL C
Sbjct: 239 EHAAKIGKGDWDVIKVKEGVVRGGGGWHGQGWLGHGQWRVVRTQMDKKGVCGSCGERLAC 298
Query: 368 IDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSF 427
IDIDPRETENFA SLS LA REV++DF +FQEWL +HGPFDAV+DGANV L+NQ F+F
Sbjct: 299 IDIDPRETENFAISLSKLAFGREVKADFIQFQEWLQQHGPFDAVVDGANVSLINQQTFNF 358
Query: 428 YQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSN 487
QLN VVNRL MSPSK+ PLVILHK RV+GGPAQ P NKKLL+ W++ GALY TP GSN
Sbjct: 359 SQLNNVVNRLHDMSPSKKFPLVILHKSRVNGGPAQSPYNKKLLERWKNSGALYATPAGSN 418
Query: 488 DDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPP 547
DDWYWLYA V+CK LLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RLSVSR G+ L MPPP
Sbjct: 419 DDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLSVSRSGIALHMPPP 478
Query: 548 YSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
YSIVIQESENG WHVP TGDDLE PRQWLCATR
Sbjct: 479 YSIVIQESENGGWHVPTTTGDDLETPRQWLCATR 512
>gi|449449619|ref|XP_004142562.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 588
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/581 (62%), Positives = 439/581 (75%), Gaps = 16/581 (2%)
Query: 7 LTPSLIRTSPFLTFLSKISL-----PLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR-F 60
L S +TSPF + +KI + PL ++ RS++ F+K I N F
Sbjct: 8 LMSSFAKTSPFFLYFTKIPVFPCQNPLRASLRTYSCRSIV------FSKNILKYSCNSYF 61
Query: 61 SADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDV 120
S LC +A + S+VN SS ++ +S+K +KKA +E+PE VL++ LDMCSK G V
Sbjct: 62 SIHTVRYLCNVASAATSSVNASSTSSSNKVSHKLRKKALKEAPESVLKYNLDMCSKYGQV 121
Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
+AL LYD+ARSNGI L+QHHYNVLLY+CS E+S N S++ L RGFEIFQQ
Sbjct: 122 VKALELYDEARSNGIQLNQHHYNVLLYLCSSPSLLETS---GANNLSSVVLSRGFEIFQQ 178
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+TDKV PNEATFTS+AR+A A++DPEMAF LVKQMK + I P+LRSYGPALFGFC+
Sbjct: 179 MMTDKVSPNEATFTSLARIAAARDDPEMAFSLVKQMKDYHIAPRLRSYGPALFGFCRKLM 238
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
+AYEVD+HM S V PEE ELSALLKLS D KK DKVYE+LHRLR VRQVSE T K+
Sbjct: 239 PKEAYEVDSHMLASAVEPEELELSALLKLSSDVKKADKVYELLHRLRRTVRQVSEPTAKV 298
Query: 301 IEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCS 360
IEDWF+S A+E+G +WDV KVRE IVR GGGWHG+GWLGSGKW++ RT ID+NGVC S
Sbjct: 299 IEDWFNSESASEVGKKHWDVDKVRECIVRRGGGWHGEGWLGSGKWKLVRTGIDDNGVCHS 358
Query: 361 CNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLV 420
C ++LVCIDIDP+ETE+FASSL+ LA QR V++DFN FQ WL +HGPFDAVIDGANVGLV
Sbjct: 359 CAQKLVCIDIDPKETEDFASSLTKLANQR-VKADFNNFQGWLEKHGPFDAVIDGANVGLV 417
Query: 421 NQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALY 480
N+ F+F QL V ++R++SPSK+MPL+ILHK R++ GPA+ P N KL++ W++ GALY
Sbjct: 418 NERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITDGPARNPNNMKLIETWKNCGALY 477
Query: 481 TTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGL 540
TP NDDWYWLYA V K LL+TNDEMRDHLFQLLG +FFP+WKEKHQ+RLSVSR+GL
Sbjct: 478 ATPYSVNDDWYWLYAAVRFKCLLLTNDEMRDHLFQLLGNTFFPQWKEKHQVRLSVSRNGL 537
Query: 541 NLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
L MPP YSIVIQESENGS HVP TGDDLE PR+WLCATR
Sbjct: 538 KLHMPPSYSIVIQESENGSLHVPTTTGDDLETPREWLCATR 578
>gi|224134767|ref|XP_002327484.1| predicted protein [Populus trichocarpa]
gi|222836038|gb|EEE74459.1| predicted protein [Populus trichocarpa]
Length = 486
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/492 (74%), Positives = 404/492 (82%), Gaps = 10/492 (2%)
Query: 90 MSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149
MS + KKKARRE+PEGVL+ KLD CSKRGDV E LRLYD+AR NG+ L+QHHYNVLLY+C
Sbjct: 1 MSLREKKKARREAPEGVLKFKLDTCSKRGDVVEGLRLYDEARKNGVELNQHHYNVLLYLC 60
Query: 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA 209
S+NG EN S+L K+GFEIFQQMI DKV PNEATFT+ ARLA A EDPEMA
Sbjct: 61 --------SQNGG-ENVSDL-RKQGFEIFQQMIIDKVPPNEATFTNAARLASAMEDPEMA 110
Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
FDLVKQMK FGI PKLRSYGP LFGFCK G DKAYEVDAHM E GVV EEPELSALLK+
Sbjct: 111 FDLVKQMKGFGILPKLRSYGPPLFGFCKKGMADKAYEVDAHMIEYGVVAEEPELSALLKV 170
Query: 270 SVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVR 329
S D DKVYE+LHRLRT VRQ +EST IIEDWF S AA+ G NWDV KV+EG+ R
Sbjct: 171 SADVNNADKVYELLHRLRTSVRQATESTVGIIEDWFKSKHAAKTGKENWDVRKVKEGVAR 230
Query: 330 GGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQR 389
GGGGWHGQGWLG G+WRV RTQ+D+ GVC SC ERL CIDIDPRETE+FA SLS LA R
Sbjct: 231 GGGGWHGQGWLGCGQWRVVRTQMDKEGVCGSCGERLACIDIDPRETEDFAISLSKLALGR 290
Query: 390 EVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLV 449
EV++DF +FQ+WL RHGPFDAV+DGAN+ L+NQ FSF QLN+VV+RL MSPSK++PLV
Sbjct: 291 EVKADFIRFQDWLQRHGPFDAVVDGANLSLINQQTFSFSQLNSVVHRLHDMSPSKKLPLV 350
Query: 450 ILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEM 509
ILHK RV+GGPAQ P NKKLL+ W++ GALY TP GSNDDWYWLYA V K LLVTNDEM
Sbjct: 351 ILHKSRVTGGPAQSPYNKKLLERWKNSGALYVTPAGSNDDWYWLYAAVCYKCLLVTNDEM 410
Query: 510 RDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDD 569
RDHLFQLLGTSFFPRWKEKHQ+RLSVSR G+ L MPPPYSIVIQESENGSWHVP T DD
Sbjct: 411 RDHLFQLLGTSFFPRWKEKHQVRLSVSRSGIALQMPPPYSIVIQESENGSWHVPTTTNDD 470
Query: 570 LEAPRQWLCATR 581
LE PRQWLCATR
Sbjct: 471 LETPRQWLCATR 482
>gi|30685224|ref|NP_850186.1| proteinaceous RNase P 1 [Arabidopsis thaliana]
gi|75115346|sp|Q66GI4.1|PRRP1_ARATH RecName: Full=Proteinaceous RNase P 1, chloroplastic/mitochondrial;
AltName: Full=Pentatricopeptide repeat-containing
protein At2g32230; Flags: Precursor
gi|51536606|gb|AAU05541.1| At2g32230 [Arabidopsis thaliana]
gi|330253558|gb|AEC08652.1| proteinaceous RNase P 1 [Arabidopsis thaliana]
Length = 572
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/587 (63%), Positives = 449/587 (76%), Gaps = 19/587 (3%)
Query: 1 MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
MLR TPS R P + K+ +H +R +H K D +
Sbjct: 1 MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRF---YHTSLLVKGTRD--RRL 55
Query: 60 FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
+ + LCTL + +S+A + +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct: 56 ILVERSRHLCTLPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIF 178
V EALRLYD+AR NG+ LSQ+HYNVLLYVCS + +ESS N GL RGF+IF
Sbjct: 113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIF 164
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+
Sbjct: 165 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 224
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
G+ DKAYEVDAHM ES VVPEEPEL+ALLK+S+D K DKVY+ L RLR LVRQVS+STF
Sbjct: 225 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 284
Query: 299 KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVC 358
+IE+WF S A + GV WDV K+R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC
Sbjct: 285 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVC 344
Query: 359 CSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVG 418
C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+G
Sbjct: 345 KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMG 404
Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
LVNQ +FSF+QLN V R +Q+SPSKR+PLVILHK RV+GGPA PKN+ LL+ W++ GA
Sbjct: 405 LVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGA 464
Query: 479 LYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR- 537
LY TPPGSNDDWYWLYA V+CK LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R
Sbjct: 465 LYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 524
Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
DGL L MPPPYSIVIQESE+G+WHVP+ DDL+ RQWLCA R++
Sbjct: 525 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKT 571
>gi|20259520|gb|AAM13880.1| unknown protein [Arabidopsis thaliana]
Length = 572
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/587 (63%), Positives = 448/587 (76%), Gaps = 19/587 (3%)
Query: 1 MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
MLR TPS R P + K+ +H +R +H K D +
Sbjct: 1 MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRF---YHTSLLVKGTRD--RRL 55
Query: 60 FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
+ + LCTL + +S+A + +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct: 56 ILVERSRHLCTLPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIF 178
V EALRLYD+AR NG+ LSQ+HYNVLLYVCS + +ESS N GL RGF+IF
Sbjct: 113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIF 164
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+
Sbjct: 165 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 224
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
G+ DKAYEVDAHM ES VVPEEPEL ALLK+S+D K DKVY+ L RLR LVRQVS+STF
Sbjct: 225 GDADKAYEVDAHMVESEVVPEEPELVALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 284
Query: 299 KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVC 358
+IE+WF S A + GV WDV K+R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC
Sbjct: 285 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVC 344
Query: 359 CSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVG 418
C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+G
Sbjct: 345 KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMG 404
Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
LVNQ +FSF+QLN V R +Q+SPSKR+PLVILHK RV+GGPA PKN+ LL+ W++ GA
Sbjct: 405 LVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGA 464
Query: 479 LYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR- 537
LY TPPGSNDDWYWLYA V+CK LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R
Sbjct: 465 LYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 524
Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
DGL L MPPPYSIVIQESE+G+WHVP+ DDL+ RQWLCA R++
Sbjct: 525 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKT 571
>gi|297826669|ref|XP_002881217.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327056|gb|EFH57476.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 572
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/587 (63%), Positives = 446/587 (75%), Gaps = 19/587 (3%)
Query: 1 MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
MLR TP R P + K+ +H +RS +H K D +
Sbjct: 1 MLRLTCFTPCFSRACCPLFAMMLKVPSVHIHHPRFSPFRS---YHTSLLVKGTRD--RRL 55
Query: 60 FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
+ + LCT+ + +S+A + +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct: 56 ILVERSRHLCTMPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIF 178
V EALRLYD+AR NG+ LSQ+HYNVLLYVCS + +ESS N GL RGF+IF
Sbjct: 113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIF 164
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+
Sbjct: 165 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 224
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
G+ KAYEVDAHM ES VVPEEPEL+ALLK+S+D K DKVYE+L RLR LVRQVS+STF
Sbjct: 225 GDAGKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYEMLQRLRDLVRQVSKSTF 284
Query: 299 KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVC 358
IE+WF S AA+ GV WDV K+R+ + GGGGWHGQGWLG+GKW V+RT++DENGVC
Sbjct: 285 DTIEEWFKSEAAAKAGVKKWDVKKIRDAVESGGGGWHGQGWLGTGKWNVKRTEMDENGVC 344
Query: 359 CSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVG 418
C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+G
Sbjct: 345 KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMG 404
Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
LVNQ +FSF+QLN V R +Q+SPSKR+PLVILHK RV+GGPA PKN+ LL+ W++ GA
Sbjct: 405 LVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGA 464
Query: 479 LYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR- 537
LY TPPGSNDDWYWLYA V K LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SVSR
Sbjct: 465 LYATPPGSNDDWYWLYAAVTYKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVSRE 524
Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
DGL L MPPPYSIVIQESE+G+WHVP+ DDL+ RQWLCA R++
Sbjct: 525 DGLTLHMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKT 571
>gi|406855803|pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
gi|406855805|pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/503 (69%), Positives = 419/503 (83%), Gaps = 10/503 (1%)
Query: 84 APNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYN 143
A + +S K+KKKA ++SPE +L+ KLDMCSK+GDV EALRLYD+AR NG+ LSQ+HYN
Sbjct: 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYN 65
Query: 144 VLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202
VLLYVCS + +ESS N GL RGF+IF+QMI DKV PNEATFT+ ARLAVA
Sbjct: 66 VLLYVCSLAEAATESSPNP--------GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA 117
Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
K+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+ G+ DKAYEVDAHM ES VVPEEPE
Sbjct: 118 KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177
Query: 263 LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSK 322
L+ALLK+S+D K DKVY+ L RLR LVRQVS+STF +IE+WF S A + GV WDV K
Sbjct: 178 LAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKK 237
Query: 323 VREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL 382
+R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC C E+LVCIDI+P ETE FA+SL
Sbjct: 238 IRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASL 297
Query: 383 SNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSP 442
+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+GLVNQ +FSF+QLN V R +Q+SP
Sbjct: 298 TRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISP 357
Query: 443 SKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSL 502
SKR+PLVILHK RV+GGPA PKN+ LL+ W++ GALY TPPGSNDDWYWLYA V+CK L
Sbjct: 358 SKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCL 417
Query: 503 LVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLLMPPPYSIVIQESENGSWH 561
LVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R DGL L MPPPYSIVIQESE+G+WH
Sbjct: 418 LVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWH 477
Query: 562 VPVITGDDLEAPRQWLCATRARV 584
VP+ DDL+ RQWLCA R++
Sbjct: 478 VPMSVEDDLQTSRQWLCAKRSKT 500
>gi|356562261|ref|XP_003549390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 550
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/571 (61%), Positives = 429/571 (75%), Gaps = 21/571 (3%)
Query: 20 FLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAFSKKSTV 79
+++++ P + H +R LL H ++ +A + +LA + KS
Sbjct: 1 MMARLAPPFSIFTQSHYWRPLLSSHN----------AKHALTAATNFSITSLARTPKS-- 48
Query: 80 NESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ 139
+ T +S+KS++KA ESPEGVL KL+ CSK GDV +ALR YD+AR G+ LS
Sbjct: 49 RDEGTTTTIKLSSKSRRKAFYESPEGVLLRKLNECSKDGDVIQALRHYDEARKLGVLLSL 108
Query: 140 HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARL 199
HYN LLY+CS + + +LGLKRGFEIFQQM+ D+V PNEATFT+ ARL
Sbjct: 109 DHYNKLLYLCSVESAA---------GVPHLGLKRGFEIFQQMLNDRVQPNEATFTNAARL 159
Query: 200 AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
A AKEDP+MAF+L+KQMK+ I PKLRSY PALFGFCK G+ +KAY VDA M ESG+V E
Sbjct: 160 AAAKEDPDMAFELLKQMKNVAIAPKLRSYEPALFGFCKRGDAEKAYLVDADMVESGIVAE 219
Query: 260 EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWD 319
EPELSALL++SV+A K DKVYE+LHRLR +RQVSEST I+E+WF+S AA+IG WD
Sbjct: 220 EPELSALLEVSVNANKEDKVYEVLHRLRATLRQVSESTLGIVENWFNSEYAAKIGKEKWD 279
Query: 320 VSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFA 379
V KVREGI RGGGGWHGQGWLGSG+W+V TQ++E+GVC SC E+L IDIDP+ETENFA
Sbjct: 280 VKKVREGIARGGGGWHGQGWLGSGRWKVVNTQVNEDGVCLSCGEKLASIDIDPKETENFA 339
Query: 380 SSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQ 439
+SLS LACQ+E +++F FQ WL RHGPFDAV+DGANVGL N HNFSF QLNTVV +LRQ
Sbjct: 340 ASLSKLACQKEAKANFVHFQTWLERHGPFDAVVDGANVGLANGHNFSFSQLNTVVEQLRQ 399
Query: 440 MSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC 499
+SPSKR+PL+ILH RV GGPAQ PKNK+L++ W+ G LY TP GSNDDWYWLYA V+C
Sbjct: 400 ISPSKRLPLIILHISRVHGGPAQNPKNKRLIENWKKNGVLYATPQGSNDDWYWLYAAVSC 459
Query: 500 KSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGS 559
K LL+TNDEMRDHLFQLLG++FFPRWKEKHQ+R S S G +L+MPP YSIVIQES +G
Sbjct: 460 KCLLLTNDEMRDHLFQLLGSNFFPRWKEKHQVRTSASTCGRSLIMPPRYSIVIQESASGC 519
Query: 560 WHVPVITGDDLEAPRQWLCATRARVKSLHSL 590
WHVP +T DD E PR+WLCATR+R SLH+L
Sbjct: 520 WHVPTVTTDDHEIPRKWLCATRSRKDSLHNL 550
>gi|356553964|ref|XP_003545320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 559
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/573 (60%), Positives = 430/573 (75%), Gaps = 21/573 (3%)
Query: 21 LSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTTGLCTLAFSKKSTVN 80
+++++ P H +R LL H T +A + +LA + KS
Sbjct: 1 MARLAPPFSIFRQSHYWRPLLSSHNAKRT----------LTAATNFSITSLARTPKS--R 48
Query: 81 ESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH 140
+ +S+K+++KA ESPEGVL KL+ CSK G+V +AL YD+AR G+ L+
Sbjct: 49 DEGTTTIVKLSSKARRKAFYESPEGVLLRKLNECSKDGNVAQALCHYDEARKLGVLLNLD 108
Query: 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLA 200
HYN LLY+CS + + NLGLKRGFE+FQQM+ D+V PNEATFT+ ARLA
Sbjct: 109 HYNKLLYLCSIESAA---------GFPNLGLKRGFEVFQQMLNDRVQPNEATFTNAARLA 159
Query: 201 VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
A EDP+MAF+L+KQMK+ I PKLRSY PALFGFCK G+ +KAY VDA M ESG+V EE
Sbjct: 160 AANEDPDMAFELLKQMKNVAIAPKLRSYEPALFGFCKRGDAEKAYLVDADMVESGIVAEE 219
Query: 261 PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDV 320
PELSALL++SV+AKK DKVY+ILHRLR+ +RQVSEST I+EDWF+S AA+IG WDV
Sbjct: 220 PELSALLEVSVNAKKEDKVYDILHRLRSTLRQVSESTLGIVEDWFNSEYAAKIGKEKWDV 279
Query: 321 SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFAS 380
KVREGI +GGGGWHGQGWLGSG+W+V TQ++E+GVC C E+LV IDIDP+ETENFA+
Sbjct: 280 KKVREGIAQGGGGWHGQGWLGSGRWKVANTQVNEDGVCPLCGEKLVSIDIDPKETENFAA 339
Query: 381 SLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM 440
SLS LACQ+E +++F FQ WL +HGPFDAV+DGANVGL N HNFSF QLNTVV +LRQ+
Sbjct: 340 SLSKLACQKEAKANFVHFQTWLEQHGPFDAVVDGANVGLANGHNFSFSQLNTVVEQLRQI 399
Query: 441 SPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCK 500
SPSKR+PL+ILH RV GGPAQ PKN +L++ W+ GALY TP GSNDDWYWLYA V+CK
Sbjct: 400 SPSKRLPLIILHISRVRGGPAQNPKNMRLIENWKKNGALYATPQGSNDDWYWLYAAVSCK 459
Query: 501 SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSW 560
LL+TNDEMRDHLFQLLG++FFPRWKEKHQ+R S S G +++MPP YSIVIQES NGSW
Sbjct: 460 CLLLTNDEMRDHLFQLLGSNFFPRWKEKHQVRTSASTCGHSIIMPPRYSIVIQESANGSW 519
Query: 561 HVPVITGDDLEAPRQWLCATRARVKSLHSLFSN 593
HVP +T DD E PR+WLCATR+R SLH+L+++
Sbjct: 520 HVPTVTTDDHEIPRKWLCATRSRKDSLHNLWTS 552
>gi|406855802|pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
gi|406855804|pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/503 (68%), Positives = 406/503 (80%), Gaps = 10/503 (1%)
Query: 84 APNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYN 143
A + +S K+KKKA ++SPE +L+ KLD CSK+GDV EALRLYD+AR NG+ LSQ+HYN
Sbjct: 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDXCSKKGDVLEALRLYDEARRNGVQLSQYHYN 65
Query: 144 VLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202
VLLYVCS + +ESS N GL RGF+IF+Q I DKV PNEATFT+ ARLAVA
Sbjct: 66 VLLYVCSLAEAATESSPNP--------GLSRGFDIFKQXIVDKVVPNEATFTNGARLAVA 117
Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
K+DPE AFD VKQ K+FGI P+LRSYGPALFGFC+ G+ DKAYEVDAH ES VVPEEPE
Sbjct: 118 KDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHXVESEVVPEEPE 177
Query: 263 LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSK 322
L+ALLK+S D K DKVY+ L RLR LVRQVS+STF IE+WF S A + GV WDV K
Sbjct: 178 LAALLKVSXDTKNADKVYKTLQRLRDLVRQVSKSTFDXIEEWFKSEVATKTGVKKWDVKK 237
Query: 323 VREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL 382
+R+ +V GGGGWHGQGWLG+GKW V+RT+ DENGVC C E+LVCIDI+P ETE FA+SL
Sbjct: 238 IRDAVVSGGGGWHGQGWLGTGKWNVKRTEXDENGVCKCCKEKLVCIDINPVETETFAASL 297
Query: 383 SNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSP 442
+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN GLVNQ +FSF+QLN V R +Q+SP
Sbjct: 298 TRLACEREVKANFNQFQEWLERHGPFDAVIDGANXGLVNQRSFSFFQLNNTVQRCQQISP 357
Query: 443 SKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSL 502
SKR+PLVILHK RV+GGPA PKN+ LL+ W++ GALY TPPGSNDDWYWLYA V+CK L
Sbjct: 358 SKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCL 417
Query: 503 LVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLLMPPPYSIVIQESENGSWH 561
LVTNDE RDHLFQLLG SFFPRWKEKHQ+R+SV+R DGL L PPPYSIVIQESE+G+WH
Sbjct: 418 LVTNDEXRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNXPPPYSIVIQESEDGTWH 477
Query: 562 VPVITGDDLEAPRQWLCATRARV 584
VP DDL+ RQWLCA R++
Sbjct: 478 VPXSVEDDLQTSRQWLCAKRSKT 500
>gi|357454841|ref|XP_003597701.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486749|gb|AES67952.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 558
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/530 (61%), Positives = 408/530 (76%), Gaps = 10/530 (1%)
Query: 58 NRFSADLTTGLC--TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCS 115
NR + TT TL+ + S N S + +S K+++KA +ESP G+L+ KL+ CS
Sbjct: 34 NRATLPFTTTTINNTLSQTPTSQNNTESTTHPIKLSTKARRKAAQESPVGILQKKLNNCS 93
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K DV +AL LYD+AR + L+ HYN LLY+C+ + G S +LGL+RGF
Sbjct: 94 KTSDVLQALNLYDEARKAHVPLNLDHYNKLLYLCTVQNGDGSF--------FHLGLQRGF 145
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF+QM+ D V+PNEATFT+ ARLA AKEDPEMAF+L+KQMK GI PKLRSYGPAL+GF
Sbjct: 146 EIFEQMLRDNVEPNEATFTNAARLAAAKEDPEMAFELLKQMKRVGIAPKLRSYGPALYGF 205
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G+ KAYEVD M ESGV+ EE EL ALL++SV+ K DKVYEILHRLR +VRQVSE
Sbjct: 206 CARGDAMKAYEVDDDMIESGVMAEEDELCALLEVSVEVKNEDKVYEILHRLRAVVRQVSE 265
Query: 296 STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDEN 355
ST K+IEDWF+S A +IG WD ++REG VRGGGGWHGQGWLGSG+W+V +T +DE+
Sbjct: 266 STLKVIEDWFESEYAMKIGKREWDDEEIREGFVRGGGGWHGQGWLGSGEWKVVKTNVDED 325
Query: 356 GVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGA 415
G+C SC+E+LV IDIDP+ETENFA+SLS LA +++ +++FN FQ+WL ++GPFDAV+DGA
Sbjct: 326 GMCLSCSEKLVSIDIDPKETENFAASLSKLAHEKQPKANFNHFQKWLEKNGPFDAVVDGA 385
Query: 416 NVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRD 475
NVGL N FSF QL+ VV +LRQ+SPSKR+PL+ILH RV+GGPAQ P NK+L++ W+
Sbjct: 386 NVGLANIAEFSFKQLDYVVRQLRQLSPSKRLPLIILHVNRVTGGPAQNPNNKRLIENWKK 445
Query: 476 GGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSV 535
G LY TP GSNDDWYWLYA V+CK LL+TNDEMRDHLFQLLG+SFFPRWKEKHQ+R+SV
Sbjct: 446 NGVLYATPHGSNDDWYWLYAAVSCKCLLLTNDEMRDHLFQLLGSSFFPRWKEKHQVRVSV 505
Query: 536 SRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARVK 585
S G +L++PP YS+VIQES NGSWHVP + D+ + PR+WLC TR+R K
Sbjct: 506 STRGASLVLPPRYSLVIQESANGSWHVPTVVSDEPDIPRKWLCVTRSRKK 555
>gi|326518132|dbj|BAK07318.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 692
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 293/483 (60%), Positives = 371/483 (76%), Gaps = 15/483 (3%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDA--RSNGITLSQHHYNVLLYVCSCKCGSESS 158
ESPEG+L+H+LDMCS+ D+ AL+LY+ A + + L+ HHYN LLY+CS
Sbjct: 85 ESPEGLLKHRLDMCSRDADLATALQLYEAAVDPATAVPLALHHYNCLLYLCS-------- 136
Query: 159 ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
+GD + +RGFEIF M V+PNEAT TS+ARLA A DP MAF +V++M +
Sbjct: 137 NSGDAD-----AARRGFEIFAAMEAQGVEPNEATLTSLARLAAAVRDPAMAFSVVRRMAA 191
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
GIPP+LRSYGPALF +C + + A EV+AHM GVVPEE EL+ALL+++ D + D+
Sbjct: 192 AGIPPRLRSYGPALFAYCDARDANGAAEVEAHMDAGGVVPEETELTALLRVNADIGRADQ 251
Query: 279 VYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQG 338
VY +LHR RTLVRQV ++T +++E WF S AAE GV WD KVREG+V+GGGGWHGQG
Sbjct: 252 VYRVLHRTRTLVRQVCQATAQVVEAWFRSDAAAEAGVDKWDARKVREGVVKGGGGWHGQG 311
Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKF 398
WLG G+W V ++++D++G C C E+LVCIDIDP ETE FA SL+ LAC REVR DF +F
Sbjct: 312 WLGKGQWDVGQSEMDKDGRCQRCGEKLVCIDIDPSETETFAKSLAELACNREVRDDFVRF 371
Query: 399 QEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSG 458
Q+WL RHGPFDAVID ANVGL FSF Q+N+VVN +++++ SK++PL++LH+ RV+
Sbjct: 372 QDWLHRHGPFDAVIDAANVGLYKSKAFSFSQVNSVVNGIQRVTKSKKLPLIVLHRSRVNC 431
Query: 459 GPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLG 518
GPA+ P+N+KL++ WR+ GALY+TPPGSNDDWYWLYA V+C+SLLVTNDEMRDHLFQLLG
Sbjct: 432 GPAKTPQNQKLIESWRNAGALYSTPPGSNDDWYWLYAAVSCRSLLVTNDEMRDHLFQLLG 491
Query: 519 TSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLC 578
TSFFPRWKEKHQ+RL+ S G +PPPYSIVIQESE GSWHVP TGDD+E+PRQW+C
Sbjct: 492 TSFFPRWKEKHQVRLTYSGRGPTFHLPPPYSIVIQESEAGSWHVPTTTGDDIESPRQWVC 551
Query: 579 ATR 581
ATR
Sbjct: 552 ATR 554
>gi|226497374|ref|NP_001147555.1| antiporter/ drug transporter/ transporter [Zea mays]
gi|195612160|gb|ACG27910.1| antiporter/ drug transporter/ transporter [Zea mays]
gi|219884449|gb|ACL52599.1| unknown [Zea mays]
Length = 553
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/507 (59%), Positives = 383/507 (75%), Gaps = 8/507 (1%)
Query: 81 ESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARS--NGITLS 138
E S+P +G +++AR ESP+G+LRH+LDMCS+ D+ ALRLYDDA S N I LS
Sbjct: 53 EDSSPRSGEGKAVRRRRAR-ESPQGLLRHQLDMCSRNADLTTALRLYDDALSPDNPIPLS 111
Query: 139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVAR 198
HHYN LLY+CS ++S + S +RGF+IF +M D V PNEAT TSVAR
Sbjct: 112 LHHYNCLLYLCSNAAATDSDSH-----ISATAAQRGFDIFARMEADGVQPNEATLTSVAR 166
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
LA A DP MAF +V++M + G PP+LR+YGPALF +C + D A +V+AHM SGVVP
Sbjct: 167 LAAATRDPAMAFSVVRRMAAAGTPPRLRTYGPALFAYCDAKDADGAKQVEAHMDASGVVP 226
Query: 259 EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNW 318
EEPEL+ALL+++ D K D+VY +LHR R LVRQV ++T +++E WF S A++ GV +W
Sbjct: 227 EEPELAALLRVNADTGKADEVYRLLHRTRVLVRQVCDTTAQVVEAWFRSDAASQAGVDSW 286
Query: 319 DVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENF 378
D +KV+EG+V+GGGGWHGQGWLG G W V T++ ++G C C ERLVCIDIDP ET+NF
Sbjct: 287 DPTKVKEGVVKGGGGWHGQGWLGKGAWSVGWTEMGKDGTCQRCGERLVCIDIDPAETDNF 346
Query: 379 ASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLR 438
A+SL+ LA + E R DF FQ WL RHGPFDAVID ANVGL +F F Q+N+VVN ++
Sbjct: 347 ANSLTELAIKLEAREDFLSFQSWLRRHGPFDAVIDAANVGLYKSKDFCFSQVNSVVNAIQ 406
Query: 439 QMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN 498
+++ SK++PL++LH+ RV+ GPA+ P N+K+LD WR+ GALY TPPGSNDDWYWLYA V+
Sbjct: 407 RVTKSKKLPLIVLHRSRVNVGPAKAPYNQKILDSWRNAGALYATPPGSNDDWYWLYAAVS 466
Query: 499 CKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENG 558
C+SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RL+ S G L +PPPYSIVIQESE+G
Sbjct: 467 CRSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTFSGHGPTLHLPPPYSIVIQESEDG 526
Query: 559 SWHVPVITGDDLEAPRQWLCATRARVK 585
SWHVP TGDD+E PRQWLC TR ++
Sbjct: 527 SWHVPTTTGDDIEKPRQWLCTTRKSLR 553
>gi|357166890|ref|XP_003580902.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Brachypodium distachyon]
Length = 567
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/485 (61%), Positives = 365/485 (75%), Gaps = 13/485 (2%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYD----DARSNGITLSQHHYNVLLYVCSCKCGSE 156
+SPEG+L+HKLDMCS+ GD+ AL LYD A S + LS HHYN LLY+CS +
Sbjct: 86 DSPEGLLKHKLDMCSRDGDLPTALALYDAALDPASSPPVPLSIHHYNCLLYLCSNAAATA 145
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
S + RGFEIF +M V+PNEAT TSVARLA A+ DP MAF +V++M
Sbjct: 146 SDPDA---------ASRGFEIFARMEAQGVEPNEATLTSVARLAAARRDPAMAFSVVRRM 196
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
GIPP+LR+YGPALF +C G+ D A EV+AHM GV+PEE EL+ALL+++ D +
Sbjct: 197 ADAGIPPRLRTYGPALFAYCDAGDADGASEVEAHMDAGGVLPEETELAALLRVNADKGRA 256
Query: 277 DKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHG 336
D+VY +LHR R L RQV E+T ++IE WF S A++ GV WD KV+EG+V+GGGGWHG
Sbjct: 257 DEVYRVLHRTRVLARQVCETTAQVIEAWFRSDAASQAGVDKWDAKKVKEGVVKGGGGWHG 316
Query: 337 QGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFN 396
QGWLG G+W VER+++D+NG C C E+LVCIDIDP ETENFA SL+ LAC+REVR DF
Sbjct: 317 QGWLGKGQWDVERSEMDKNGKCQRCGEKLVCIDIDPSETENFAKSLTELACKREVRDDFL 376
Query: 397 KFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRV 456
+FQ WL RHGPFDAVID AN+GL N FSF Q+N+VVN +++++ SK++PL+ILH+ RV
Sbjct: 377 RFQGWLRRHGPFDAVIDAANIGLYNSKAFSFSQVNSVVNGIQRVTKSKKLPLIILHRSRV 436
Query: 457 SGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQL 516
GPA +P N+KL++ WR GALY+TPPGSNDDWYWLYA V+C+SLLVTNDEMRDHLFQL
Sbjct: 437 HCGPAIVPHNQKLIEGWRSAGALYSTPPGSNDDWYWLYAAVSCRSLLVTNDEMRDHLFQL 496
Query: 517 LGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQW 576
LGTSFFPRWKEKHQ+RL+ S G +PPPYSIV QESE G WHVP TGDD+E PRQW
Sbjct: 497 LGTSFFPRWKEKHQVRLTYSGRGPTFHLPPPYSIVTQESEAGRWHVPTTTGDDIENPRQW 556
Query: 577 LCATR 581
+CA R
Sbjct: 557 ICAIR 561
>gi|218195893|gb|EEC78320.1| hypothetical protein OsI_18054 [Oryza sativa Indica Group]
Length = 557
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/507 (56%), Positives = 377/507 (74%), Gaps = 15/507 (2%)
Query: 77 STVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARS--NG 134
+T PN SN ++++ R+SPEG+L+ KLDMCS+ D+ AL LY+ A S +
Sbjct: 49 TTAESHPKPNE---SNAARRRRARDSPEGLLKAKLDMCSRDNDLPTALALYEAAISPDSL 105
Query: 135 ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT 194
I LS HYN LLY+C+ ++SS + RGF+IF +M D V PNEAT T
Sbjct: 106 IPLSLGHYNCLLYLCANAAAADSSSPDAAQ--------RGFDIFSRMEADGVQPNEATLT 157
Query: 195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254
+ARLA A+ DP MAF +V++M + G P LRSYGPALF +C G+ D A EV+AHM S
Sbjct: 158 ILARLAAARRDPAMAFSIVRRMATAGTAPHLRSYGPALFAYCDAGDADGATEVEAHMDAS 217
Query: 255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG 314
GVVPEE EL+ALL+++ + D+VY +LHR R L+RQV+++T +++E WF S A+E G
Sbjct: 218 GVVPEEAELAALLRVNSARGRPDQVYRLLHRARVLLRQVADATAQLLESWFASHAASEAG 277
Query: 315 VLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRE 374
+ +WD +KV++G+ GGGGWHGQGWLG G+W V RT +D++G C C E+LVCIDIDP E
Sbjct: 278 LDHWDATKVKQGLRNGGGGWHGQGWLGKGQWTVARTDMDKDGTCHRCGEKLVCIDIDPSE 337
Query: 375 TENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVV 434
T +FA S++ +A R+ ++F KFQ+WL HGPFDAVID ANVGL N+++FSFY++N VV
Sbjct: 338 THSFAESVAQIAINRD--ANFVKFQKWLECHGPFDAVIDAANVGLYNRNSFSFYEVNRVV 395
Query: 435 NRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLY 494
N +++++ SK++PL+ILHK RV+GGPA++P+N+KLL+ W+ GALY TPPGSNDDWYWLY
Sbjct: 396 NGIQRITKSKKLPLIILHKNRVNGGPAKLPQNQKLLESWQRAGALYATPPGSNDDWYWLY 455
Query: 495 ATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQE 554
A V +SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RL+ S G N +PPPYSIVIQE
Sbjct: 456 AAVIYRSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTFSGRGWNFHLPPPYSIVIQE 515
Query: 555 SENGSWHVPVITGDDLEAPRQWLCATR 581
SE+GSWHVP GDD+E PRQW+CATR
Sbjct: 516 SEDGSWHVPTTNGDDIEKPRQWICATR 542
>gi|222629843|gb|EEE61975.1| hypothetical protein OsJ_16752 [Oryza sativa Japonica Group]
Length = 783
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 280/480 (58%), Positives = 363/480 (75%), Gaps = 12/480 (2%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARS--NGITLSQHHYNVLLYVCSCKCGSESSENG 161
EG+L+ KLDMCS+ D+ AL LY+ A S + I LS HYN LLY+C+ ++SS
Sbjct: 299 EGLLKAKLDMCSRDNDLPTALALYEAAISPDSLIPLSLGHYNCLLYLCANAAAADSS--- 355
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
S +RGF+IF +M D V PNEAT T +ARLA A+ DP MAF +V++M + G
Sbjct: 356 -----SPDAAQRGFDIFSRMEADGVQPNEATLTILARLAAARRDPAMAFSIVRRMATAGT 410
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P LRSYGPALF +C G+ D A EV+AHM SGVVPEE EL+ALL+++ + D+VY
Sbjct: 411 APHLRSYGPALFAYCDAGDADGATEVEAHMDASGVVPEEAELAALLRVNSARGRPDQVYR 470
Query: 282 ILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLG 341
+LHR R L+RQV+++T +++E WF S A+E G+ +WD +KV++G+ GGGGWHGQGWLG
Sbjct: 471 LLHRARVLLRQVADATAQLLESWFASHAASEAGLDHWDATKVKQGLRNGGGGWHGQGWLG 530
Query: 342 SGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEW 401
G+W V RT +D++G C C E+LVCIDIDP ET +FA S++ +A R+ ++F KFQ+W
Sbjct: 531 KGQWTVARTDMDKDGTCHRCGEKLVCIDIDPSETHSFAESVAQIAINRD--ANFVKFQKW 588
Query: 402 LGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPA 461
L HGPFDAVID ANVGL N+++FSFY++N VVN +++++ SK++PL+ILHK RV+GGPA
Sbjct: 589 LECHGPFDAVIDAANVGLYNRNSFSFYEVNRVVNGIQRITKSKKLPLIILHKNRVNGGPA 648
Query: 462 QIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSF 521
++P+N+KLL+ W+ GALY TPPGSNDDWYWLYA V +SLLVTNDEMRDHLFQLLGTSF
Sbjct: 649 KLPQNQKLLESWQRAGALYATPPGSNDDWYWLYAAVIYRSLLVTNDEMRDHLFQLLGTSF 708
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
FPRWKE HQ+RL+ S G N +PPPYSIVIQESE+GSWHVP GDD+E PRQW+CATR
Sbjct: 709 FPRWKENHQVRLTFSGRGWNFHLPPPYSIVIQESEDGSWHVPTTNGDDIEKPRQWICATR 768
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 102/192 (53%), Positives = 142/192 (73%), Gaps = 2/192 (1%)
Query: 208 MAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
MAF +V++M + G P LRSYGPALF +C G+ D A EV+AHM SGVVPEE EL+ALL
Sbjct: 1 MAFSIVRRMATAGTAPHLRSYGPALFAYCDAGDADGATEVEAHMDASGVVPEEAELAALL 60
Query: 268 KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
+++ + D+VY +LHR R L+RQV+++T +++E WF S A+E G+ +WD +KV++G+
Sbjct: 61 RVNSARGRPDQVYRLLHRARVLLRQVADATAQLLESWFASHAASEAGLDHWDATKVKQGL 120
Query: 328 VRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC 387
GGGGWHGQGWLG G+W V RT +D++G C C E+LVCIDIDP ET +FA S++ +A
Sbjct: 121 RNGGGGWHGQGWLGKGQWTVARTDMDKDGTCHRCGEKLVCIDIDPSETHSFAESVAQIAI 180
Query: 388 QREVRSDFNKFQ 399
R+ ++F KFQ
Sbjct: 181 NRD--ANFVKFQ 190
>gi|242074900|ref|XP_002447386.1| hypothetical protein SORBIDRAFT_06g034140 [Sorghum bicolor]
gi|241938569|gb|EES11714.1| hypothetical protein SORBIDRAFT_06g034140 [Sorghum bicolor]
Length = 528
Score = 556 bits (1433), Expect = e-155, Method: Compositional matrix adjust.
Identities = 285/478 (59%), Positives = 361/478 (75%), Gaps = 8/478 (1%)
Query: 81 ESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARS--NGITLS 138
E S+P+ G ++++ RESPEG+LRH+LDMCS+ D+ ALRLYDDA S + LS
Sbjct: 53 EDSSPSNGE-GKAARRRRARESPEGLLRHQLDMCSRNADLTTALRLYDDALSPDTPVPLS 111
Query: 139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVAR 198
HHYN LLY+CS +++ + S +RGF+IF +M D V PNEAT TSVAR
Sbjct: 112 LHHYNCLLYLCSNAAATDTDTDS-----STAAAQRGFDIFARMEADGVQPNEATLTSVAR 166
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
LA A DP MAF +V++M + G PP+LRSYGPALF +C + D A +V+AHM SGVVP
Sbjct: 167 LAAATRDPAMAFSVVRRMAAAGTPPRLRSYGPALFAYCDAKDADGAKQVEAHMDASGVVP 226
Query: 259 EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNW 318
EEPEL+ALL+++ D K D+VY +LHR R LVRQV ++T +++E WF S A++ GV W
Sbjct: 227 EEPELAALLRVNADKGKADEVYRLLHRTRALVRQVCDTTAQVVEAWFRSDAASQAGVDKW 286
Query: 319 DVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENF 378
D SKV+EG+V+GGGGWHGQGWLG G W V T++D++G C C E+LVCIDIDP ET+NF
Sbjct: 287 DPSKVKEGVVKGGGGWHGQGWLGKGAWSVGWTEMDKDGTCQRCGEKLVCIDIDPSETDNF 346
Query: 379 ASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLR 438
A+SL+ LA +REV+ DF FQ WL RHGPFDAVID ANVGL N FSF Q+N+VVN ++
Sbjct: 347 ANSLTELAIKREVKEDFLGFQNWLRRHGPFDAVIDAANVGLYNSKAFSFSQVNSVVNAIQ 406
Query: 439 QMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN 498
+++ SK++PL+ILH+ RV+GGPA+ P N+K+L+ WR+ GALY TPPGSNDDWYWLYA V+
Sbjct: 407 RVTKSKKLPLIILHRNRVNGGPAKAPYNQKILESWRNAGALYATPPGSNDDWYWLYAAVS 466
Query: 499 CKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESE 556
C+SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ+RL+ S G L +PPPYSIVIQ E
Sbjct: 467 CRSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTFSGRGPTLHLPPPYSIVIQVME 524
>gi|356527775|ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 724
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 265/529 (50%), Positives = 336/529 (63%), Gaps = 47/529 (8%)
Query: 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKC--------- 153
PE L++ LDMCSKRGDV AL LYD A S G+ L QHHY VLLY+CS
Sbjct: 105 PEVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKS 164
Query: 154 -------------------GSESSENGDRENDSNL------------------GLKRGFE 176
G+ +G E +S+L L+RGFE
Sbjct: 165 GSGARTLNSHVYSNEVPNEGTHFDLDGKAELNSDLNSTEKDEILLVSEDVKRYALQRGFE 224
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++Q M DKV NEA T+VAR+A++ D + AF++V+QMK GI P+LRSYGPALF FC
Sbjct: 225 VYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPALFTFC 284
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
G DKA+ V+ HM + GV PEEPEL ALL++SV A DKVY +LH+LR++VR+VS +
Sbjct: 285 NNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRKVSPT 344
Query: 297 TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENG 356
T +I DWF S A+ +G WD +RE I GGGWHGQGWLG GKW T I ++G
Sbjct: 345 TSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTIGKDG 404
Query: 357 VCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGAN 416
+C C +L ID+DP ETENFA S+++LA RE S+F KFQ+WL GPF+AV+D AN
Sbjct: 405 MCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVVDAAN 464
Query: 417 VGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDG 476
VGL Q F +++N V N +RQ PSK+ PL+ILH R+ G P N+ L+D W +
Sbjct: 465 VGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDKWNNA 524
Query: 477 GALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVS 536
ALY TP GSNDDWYWLYA + + LLVTNDEMRDHLFQLLG FFP+WKE+HQ+R S S
Sbjct: 525 DALYATPTGSNDDWYWLYAAIKFRCLLVTNDEMRDHLFQLLGNDFFPKWKERHQVRFSFS 584
Query: 537 RDGLNLL-MPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
G + MPPP S+VIQESE G WH+P+ + E+ R+WLC TRA++
Sbjct: 585 DTGSPVFHMPPPCSVVIQESEEGHWHIPIDAELNDESERRWLCITRAKL 633
>gi|296081503|emb|CBI20026.3| unnamed protein product [Vitis vinifera]
Length = 393
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 252/373 (67%), Positives = 289/373 (77%), Gaps = 39/373 (10%)
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
MKS GIPPKLRSYGP LFGFCK G+ D+AYEVDAHM ESGVV EEPEL ALL LSV++++
Sbjct: 1 MKSCGIPPKLRSYGPPLFGFCKKGDADRAYEVDAHMMESGVVAEEPELCALLGLSVESRR 60
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWH 335
VD+VYE++HRLR VRQVSEST +++E WF+S DAA
Sbjct: 61 VDRVYEMVHRLRASVRQVSESTAEVVERWFNSEDAA------------------------ 96
Query: 336 GQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDF 395
+DE GVC SC E+LVCIDIDPRETENFASSL+ LACQREV++DF
Sbjct: 97 ---------------GMDEAGVCQSCGEKLVCIDIDPRETENFASSLTKLACQREVKADF 141
Query: 396 NKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGR 455
+FQEWL RHGPFDAV+DGANV L+NQ +FSF++LN+VVNRLRQ+SPSKR+PLVILH+ R
Sbjct: 142 VQFQEWLQRHGPFDAVVDGANVSLINQKSFSFFELNSVVNRLRQISPSKRLPLVILHRSR 201
Query: 456 VSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQ 515
V+GGPAQ P NKKL++ W+ GALY TP GSNDDWYWLYA VNC LLVTNDEMRDHLFQ
Sbjct: 202 VTGGPAQNPNNKKLIESWKKSGALYATPAGSNDDWYWLYAAVNCNCLLVTNDEMRDHLFQ 261
Query: 516 LLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQ 575
LLGTSFFPRWKEKHQ+RL+++R G L MPPPYSIVIQESE GSWHVP +TGDDLE PRQ
Sbjct: 262 LLGTSFFPRWKEKHQVRLTITRRGPVLHMPPPYSIVIQESEQGSWHVPTVTGDDLETPRQ 321
Query: 576 WLCATRARVKSLH 588
WLCATR R H
Sbjct: 322 WLCATRTRKNHRH 334
>gi|167998708|ref|XP_001752060.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697158|gb|EDQ83495.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 552
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/508 (52%), Positives = 346/508 (68%), Gaps = 15/508 (2%)
Query: 84 APNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG-ITLSQHHY 142
APN ++ K K +R+ E LR +DMCSK D A+ +YD + G ++ +Q+ Y
Sbjct: 8 APNDQQDGDERKSKKKRDPAESELRRSIDMCSKHADAMGAIEIYDKVVAEGKMSFNQYSY 67
Query: 143 NVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202
NVLLY+CS ++ L L+RGF +++ M V PNEATFT+VARLAVA
Sbjct: 68 NVLLYLCSSGATVVLTDE-----QKQLCLQRGFAVYEAMKLQGVPPNEATFTAVARLAVA 122
Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
K+D ++AFD+VKQM + P+LRSY PAL +CKL N +KA+EVD HM +GV PEE E
Sbjct: 123 KDDGDLAFDMVKQMAKAKLSPRLRSYSPALHTYCKLKNIEKAFEVDEHMLAAGVQPEESE 182
Query: 263 LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSK 322
L ALLKL+ DA DKVY +LHR+RT VR +S ST +++ WF+S A G NW+
Sbjct: 183 LEALLKLTADAGLEDKVYPLLHRIRTTVRGLSPSTAGVVQQWFESSAGANAGKSNWNSLP 242
Query: 323 VREGIVRG----GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENF 378
+E + GGGWHG GWLG G W V+ +++D NGVC C E+LV IDIDP+ET F
Sbjct: 243 SQETVKAAYESRGGGWHGLGWLGRGSWEVKPSELDANGVCQECGEQLVTIDIDPKETVMF 302
Query: 379 ASSLSNLACQREVRS-DFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTV 433
A SLS LACQRE +S +F KFQ WL RHGPFD ++DGANVGL NQ+ F+F+QLN+V
Sbjct: 303 AKSLSELACQREGKSNEFKKFQGWLDRHGPFDVIVDGANVGLFNQNFGEGGFNFHQLNSV 362
Query: 434 VNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWL 493
V +++ SKR PL++LH R GGPA K+L+ W++ A+YTTP GSNDDWYWL
Sbjct: 363 VKGIKEKVGSKREPLILLHHRRTRGGPASSSFAIKILNKWQETHAIYTTPTGSNDDWYWL 422
Query: 494 YATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQ 553
+A V K +LVTNDEMRDHLFQLLG FFPRWKE+HQ+R S+SR+G MPPPYS++IQ
Sbjct: 423 FAAVKYKCILVTNDEMRDHLFQLLGNDFFPRWKERHQVRFSLSREGPVFHMPPPYSMLIQ 482
Query: 554 ESENGSWHVPVITGDDLEAPRQWLCATR 581
ES +GSWH+P G+D+ AP +WLC TR
Sbjct: 483 ESVSGSWHIPKSGGEDVSAPVKWLCVTR 510
>gi|296082798|emb|CBI21803.3| unnamed protein product [Vitis vinifera]
Length = 339
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 244/373 (65%), Positives = 282/373 (75%), Gaps = 39/373 (10%)
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
MKS GIPPKLRSYGP LFGFCK G+ ++AYEVDAHM ESGVV EEPEL ALL LSV+++
Sbjct: 1 MKSCGIPPKLRSYGPPLFGFCKKGDANRAYEVDAHMVESGVVAEEPELCALLGLSVESRW 60
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWH 335
VD+VYE++HRLR VRQVSEST +++E WF+S DAA
Sbjct: 61 VDQVYEMMHRLRASVRQVSESTAEVVERWFNSEDAA------------------------ 96
Query: 336 GQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDF 395
+DE GVC SC E+LV IDIDPRETENFASSL+ LACQREV++DF
Sbjct: 97 ---------------GMDEAGVCQSCGEKLVGIDIDPRETENFASSLTKLACQREVKADF 141
Query: 396 NKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGR 455
+FQEWL HGPFDAV+DGANV L+NQ +FSF++LN+VVN LRQ+SPSK++PLVILH+ R
Sbjct: 142 VQFQEWLQWHGPFDAVVDGANVSLINQKSFSFFELNSVVNCLRQISPSKQLPLVILHRSR 201
Query: 456 VSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQ 515
V+GGPAQ P N+KL+ W+ GALY TP GSNDDWYWLYA VN LLVTNDEMRDHLFQ
Sbjct: 202 VTGGPAQNPNNEKLIQSWKKSGALYATPAGSNDDWYWLYAAVNGNCLLVTNDEMRDHLFQ 261
Query: 516 LLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQ 575
LLGTSFFPRWKEKHQ+RL+++R G L MPPPYSIVIQESE GSWHVP + GDDLE PRQ
Sbjct: 262 LLGTSFFPRWKEKHQVRLTMTRRGPVLHMPPPYSIVIQESEQGSWHVPTVIGDDLETPRQ 321
Query: 576 WLCATRARVKSLH 588
WLCATR R H
Sbjct: 322 WLCATRTRKNHRH 334
>gi|168007180|ref|XP_001756286.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692325|gb|EDQ78682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 526
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/509 (51%), Positives = 345/509 (67%), Gaps = 15/509 (2%)
Query: 83 SAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG-ITLSQHH 141
+AP + K +++S E LR +DMCSK DV A+ +YD + G + +Q+
Sbjct: 7 AAPYDQQNGDDRNHKKKKDSAESELRRSIDMCSKFADVMGAIEIYDKVVAEGKVAFNQYT 66
Query: 142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
YNVLLY+CS S ++E + + L L+RGF I++ M +V PNEATFT+VARLAV
Sbjct: 67 YNVLLYLCS----SAATEVVVTDEERRLCLERGFVIYEAMKLQEVPPNEATFTAVARLAV 122
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
AKED ++AFD+VKQM + + P+LRSY PAL +CKL N +KA+EV+ HM +GV EE
Sbjct: 123 AKEDGDLAFDMVKQMANAKLSPRLRSYSPALHIYCKLKNFEKAFEVEEHMLAAGVQAEES 182
Query: 262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDV- 320
EL ALL+L+ D KVY +LHR+RT VR +S S +++ WF+S AA G NWD
Sbjct: 183 ELEALLQLATDFGLEYKVYSLLHRIRTTVRGLSPSCAGVVQQWFESSPAASAGKSNWDSL 242
Query: 321 ---SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETEN 377
V+ GGGWHG GWLG G W V+ + +D GVC C ++LV IDIDP ETE
Sbjct: 243 PSPKTVKAAYESRGGGWHGLGWLGRGNWEVKSSVLDTGGVCQECGQQLVTIDIDPNETEM 302
Query: 378 FASSLSNLACQREVRS-DFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNT 432
FA SLS LACQRE ++ +F KFQ WL RHGPFDA++DGANVGL NQ+ F+F+QLN+
Sbjct: 303 FAKSLSELACQREGKNNEFKKFQAWLNRHGPFDAIVDGANVGLFNQNFVDGGFNFHQLNS 362
Query: 433 VVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYW 492
VV +++ SKR PL++LH R GGPA P K+L W++ A++TTP GSNDDWYW
Sbjct: 363 VVKGIKEKIGSKRNPLILLHHRRTRGGPANSPHAIKMLKRWQEAHAIFTTPTGSNDDWYW 422
Query: 493 LYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVI 552
LYA V K +LVTNDEMRDHLF LLG FFP+WKE+HQ+R S+S++G MPPPYSI+I
Sbjct: 423 LYAAVQYKCVLVTNDEMRDHLFHLLGNDFFPKWKERHQVRFSMSKEGPVYHMPPPYSILI 482
Query: 553 QESENGSWHVPVITGDDLEAPRQWLCATR 581
QES +GSWH+P +G+D+ P +WLC TR
Sbjct: 483 QESVSGSWHIPK-SGNDVSQPGEWLCVTR 510
>gi|413936385|gb|AFW70936.1| hypothetical protein ZEAMMB73_755879 [Zea mays]
Length = 684
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 251/542 (46%), Positives = 332/542 (61%), Gaps = 65/542 (11%)
Query: 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY---------VCSCKCG- 154
G LR +LDMCSKRGDV A+ LYD A GI L QHHYNVLLY V K G
Sbjct: 137 GKLRVELDMCSKRGDVMGAITLYDSAVEEGIKLGQHHYNVLLYLCSSASLGFVQPAKSGN 196
Query: 155 --------------------------------SESSENGDRENDSNL---GLK------- 172
SES +N ++L GLK
Sbjct: 197 MGSGIASIGPAQKLDPSPSRSLGGSEGDNAYASESHVQDQGKNKADLIPGGLKAQTVSIP 256
Query: 173 -----------RGFEIFQQMITDK--VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
RGFEIF +M ++K V +EA T+ AR+A++ D +MAF++VKQMK
Sbjct: 257 VEDELGDYARARGFEIFDKMCSEKERVQMSEAALTAKARMALSMGDSDMAFEIVKQMKGL 316
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
G+ PKLRSYGPAL FC GN +KA+EV+AHM ESG+ PEE EL LL+ SV ++ DKV
Sbjct: 317 GLKPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGITPEEAELETLLRASVVGRRGDKV 376
Query: 280 YEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGW 339
Y +LH+ RT VRQVS ST ++ E WF S A+++G WD + + I GGGWHG GW
Sbjct: 377 YYLLHKFRTAVRQVSHSTAELFEAWFRSPTASKVGKRKWDAGAIAKAIENNGGGWHGFGW 436
Query: 340 LGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQ 399
LG GKW V + I+ENGVC +C E+L ID+DP+ETE+FA+ ++ LA +RE +S+F FQ
Sbjct: 437 LGRGKWTVAHSNINENGVCLACGEKLAIIDLDPKETEDFATFVAKLAIKRERKSNFENFQ 496
Query: 400 EWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGG 459
+WL +HGPF+AV+D ANVGL + + S ++N+V + +R SK+ PL++LH + G
Sbjct: 497 KWLEKHGPFEAVVDAANVGLFSHKHLSLSKVNSVADAIRLRFTSKKWPLIVLHNKHLIGE 556
Query: 460 PAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGT 519
+ + KL+ W+ ++Y TP GSNDDWYWLYA + CK L++TNDEMRDH FQ+L
Sbjct: 557 RMKKLNDHKLVQKWKQENSIYATPTGSNDDWYWLYAAIRCKCLIITNDEMRDHTFQILER 616
Query: 520 SFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCA 579
+FFP+WKE+HQ+ ++ + MPPPYS+VIQES+ G WH+PV LE R WLC
Sbjct: 617 NFFPKWKERHQVHFTLEDRCVTFQMPPPYSVVIQESDKGHWHIPVSEEGLLEKDRTWLCV 676
Query: 580 TR 581
TR
Sbjct: 677 TR 678
>gi|302764204|ref|XP_002965523.1| hypothetical protein SELMODRAFT_84628 [Selaginella moellendorffii]
gi|300166337|gb|EFJ32943.1| hypothetical protein SELMODRAFT_84628 [Selaginella moellendorffii]
Length = 532
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 258/518 (49%), Positives = 332/518 (64%), Gaps = 27/518 (5%)
Query: 78 TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL 137
T ++ NT S + +K ++ +P+ LR KL+ CSK GDV AL +YD ++ G+ L
Sbjct: 23 TKKRAATDNTNHESKRCVQKKKKFTPDSELRFKLESCSKVGDVTGALDIYDSSKDQGVKL 82
Query: 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA 197
SQ+HYNVLLY+CS S+ G L L RG EI+++M + + NEA FTS+A
Sbjct: 83 SQYHYNVLLYLCS------SAALG-----VILALDRGLEIYERMKLEGISANEAAFTSIA 131
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
RLAVAK D ++AF LVK+M + GI PKLRSYGPAL+ + K DKA+EVD HM GV
Sbjct: 132 RLAVAKRDGDLAFSLVKEMTTSGITPKLRSYGPALYTYFKSNRVDKAFEVDDHMRSFGVQ 191
Query: 258 PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVL- 316
PEE EL LL+LS+ A + +VY +LHRLR VR+VS ST IE WF S A+ G
Sbjct: 192 PEEMELQILLELSLKAGQEQRVYSVLHRLRRSVREVSPSTATTIERWFSSDAASSSGSDK 251
Query: 317 NWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETE 376
+D VR + GGG GW+GSG+W V+RT +D +GVC SC ++ +D++ ET
Sbjct: 252 KYDDEDVRRALAAQGGGGLELGWIGSGRWSVKRTALDASGVCESCRHKMAAVDLNAEETN 311
Query: 377 NFASSLSNLACQREVRSD-FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLN 431
FA +L+ LAC++E ++ F +FQEW+ HGPFDA++DGANV L NQ+ FSF QLN
Sbjct: 312 RFAENLAALACEKERDANSFKEFQEWMAEHGPFDAIVDGANVALFNQNFSAGGFSFSQLN 371
Query: 432 TVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWY 491
+VV L + PLVILHK RV+GGPA P++++LL W ALYT GSNDDWY
Sbjct: 372 SVVTELSNQ--HGKSPLVILHKRRVTGGPAASPQSQELLKQWTAANALYTAATGSNDDWY 429
Query: 492 WLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIV 551
WLYA V CK LLV+NDEMRDHLFQ+LG FPRWKE+HQ++L MPPPYS V
Sbjct: 430 WLYAAVTCKCLLVSNDEMRDHLFQMLGNDLFPRWKERHQVKLRALSYNPFFDMPPPYSTV 489
Query: 552 IQESENGSWHVPVITGDDLE--------APRQWLCATR 581
IQE ENGSWH P+ G+D + PR WLC R
Sbjct: 490 IQECENGSWHFPISRGNDEDDEAEEPHKQPRSWLCIRR 527
>gi|302802496|ref|XP_002983002.1| hypothetical protein SELMODRAFT_117602 [Selaginella moellendorffii]
gi|300149155|gb|EFJ15811.1| hypothetical protein SELMODRAFT_117602 [Selaginella moellendorffii]
Length = 534
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 259/518 (50%), Positives = 331/518 (63%), Gaps = 27/518 (5%)
Query: 78 TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL 137
T ++ NT S + +K ++ +P+ LR KL+ CSK GDV AL +YD ++ G+ L
Sbjct: 23 TKKRAATDNTNHESKRCVQKKKKFTPDSELRFKLESCSKVGDVTGALDIYDSSKDQGVKL 82
Query: 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA 197
SQ+HYNVLLY+CS S+ G L L RG EI+++M + + NEA FTS+A
Sbjct: 83 SQYHYNVLLYLCS------SAALG-----VILALDRGLEIYERMKLEGISANEAAFTSIA 131
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
RLAVAK D ++AF LVK+M + GI PKLRSYGPAL+ + K DKA+EVD HM GV
Sbjct: 132 RLAVAKRDGDLAFSLVKEMTTSGITPKLRSYGPALYTYFKSNQVDKAFEVDDHMRSFGVQ 191
Query: 258 PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVL- 316
PEE EL LL+LS+ A +VY +LHRLR VR+VS ST IE WF S A+ G
Sbjct: 192 PEEMELQILLELSLKAGLDQRVYSVLHRLRRSVREVSPSTATTIERWFSSDAASSSGSDK 251
Query: 317 NWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETE 376
+D VR + GGG GW+GSG W V+RT +D +GVC SC ++ +D++ ET
Sbjct: 252 KYDDEDVRRALAAQGGGGLELGWIGSGGWSVKRTALDASGVCESCRHKMAAVDLNAEETN 311
Query: 377 NFASSLSNLACQREVRSD-FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLN 431
FA +L+ LAC++E ++ F +FQEW+ HGPFDA++DGANV L NQ+ FSF QLN
Sbjct: 312 RFAENLAALACEKERDANSFKEFQEWMAEHGPFDAIVDGANVALFNQNFSAGGFSFSQLN 371
Query: 432 TVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWY 491
+VV L + PLVILHK RV+GGPA P++++LL W ALYT GSNDDWY
Sbjct: 372 SVVTELSNQ--HGKSPLVILHKRRVTGGPAASPQSQELLKQWTAANALYTAATGSNDDWY 429
Query: 492 WLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIV 551
WLYA V CK LLV+NDEMRDHLFQ+LG FPRWKE+HQ++L MPPPYS V
Sbjct: 430 WLYAAVTCKCLLVSNDEMRDHLFQMLGNDLFPRWKERHQVKLRALSYNPFFDMPPPYSTV 489
Query: 552 IQESENGSWHVPVITGDD--------LEAPRQWLCATR 581
IQE ENGSWH P+ G+D + PR WLC TR
Sbjct: 490 IQECENGSWHFPISRGNDENDEAEEPRKQPRSWLCITR 527
>gi|356543574|ref|XP_003540235.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 530
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 241/487 (49%), Positives = 327/487 (67%), Gaps = 16/487 (3%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
++PE + +L+ CSK D+ A+ LYDDA SN L+QHH+N LLY+CS S +
Sbjct: 14 QNPEAKFQFELNTCSKAKDLRGAISLYDDAVSNNTRLNQHHFNALLYLCSNSVADPSLKP 73
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSF 219
L GF F M V PNEAT T+VARLA AK D + AFDLVK M K++
Sbjct: 74 --------TALDYGFRAFCHMSALAVLPNEATVTAVARLAAAKGDADYAFDLVKSMGKNY 125
Query: 220 GIP-PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
P+LR+Y PALF FC++ + DKAYEV+ HM GV EE E++ALLK+S + DK
Sbjct: 126 NNALPRLRTYDPALFCFCEMLDADKAYEVEEHMSGVGVSLEEAEVAALLKVSARCGRADK 185
Query: 279 VYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQG 338
VYE LH+LR+ VR VSES+ +IE+WF ++E+G + ++ +V+EG++R GGGWHGQG
Sbjct: 186 VYEYLHKLRSSVRCVSESSAVVIEEWFRGSKSSEVGEVEFEAGQVKEGVLRNGGGWHGQG 245
Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKF 398
W+G G W V RT + +G CC C E+LVC+DID E E FA S++ LA +REV+++F++F
Sbjct: 246 WVGKGDWVVSRTSVGADGHCCCCGEQLVCVDIDDAEREKFAGSVAALAFEREVKANFSEF 305
Query: 399 QEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHKG 454
Q WL +H ++A++DGAN+GL Q+ FS QL+ VV L S K+ PLV+LH
Sbjct: 306 QAWLEKHASYEAIVDGANIGLYQQNFADGGFSISQLDDVVKELYNRS-GKKWPLVVLHNK 364
Query: 455 RVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLF 514
R+ G + P +++L++ W + GALYTTP GSNDDWYWL+A V + LLVTNDEMRDH+F
Sbjct: 365 RLR-GLMENPSSRRLVEEWMNNGALYTTPNGSNDDWYWLFAAVKLRCLLVTNDEMRDHIF 423
Query: 515 QLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPR 574
+L+G++FF +WKE+HQ+ + + L L MPP YS+VIQESE G WHVP+ G E+ R
Sbjct: 424 ELIGSNFFNQWKERHQVHYTFVKGNLKLQMPPSYSLVIQESEKGYWHVPLAPGTSCESTR 483
Query: 575 QWLCATR 581
WLC TR
Sbjct: 484 CWLCITR 490
>gi|357520987|ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524804|gb|AET05258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 668
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 222/415 (53%), Positives = 290/415 (69%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L+RGFE+++ M KV+ NEA TSVAR+A+A D + AF++VKQMK GI P+LRSYG
Sbjct: 195 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 254
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
PAL +C G DKA++V+ HM E GV PEEPEL ALL++S+ K D+VY +LH+LR+
Sbjct: 255 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 314
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVER 349
VR+VS +T +I DWF S A ++G WD + + + GGGWHG GWLG GKW+V +
Sbjct: 315 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 374
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFD 409
T + ++G+C C +L ID+DP ETENFA S++++A E S+F FQ+WL +GPF+
Sbjct: 375 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 434
Query: 410 AVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKL 469
AVID ANVGL +Q F ++N VVN LRQ PSK+ PL++LH R+ G +P NK L
Sbjct: 435 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 494
Query: 470 LDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKH 529
+D W + LY TP GSNDDWYWLYA + K LLV+NDEMRDHLFQLLG FFP+WKE+H
Sbjct: 495 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 554
Query: 530 QIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
Q+R S GL MPPP S+VIQESE G WH+P+ + EA R+WLC TRA++
Sbjct: 555 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELNDEAERRWLCITRAKL 609
>gi|357520951|ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524786|gb|AET05240.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 222/415 (53%), Positives = 290/415 (69%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L+RGFE+++ M KV+ NEA TSVAR+A+A D + AF++VKQMK GI P+LRSYG
Sbjct: 229 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 288
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
PAL +C G DKA++V+ HM E GV PEEPEL ALL++S+ K D+VY +LH+LR+
Sbjct: 289 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 348
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVER 349
VR+VS +T +I DWF S A ++G WD + + + GGGWHG GWLG GKW+V +
Sbjct: 349 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 408
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFD 409
T + ++G+C C +L ID+DP ETENFA S++++A E S+F FQ+WL +GPF+
Sbjct: 409 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 468
Query: 410 AVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKL 469
AVID ANVGL +Q F ++N VVN LRQ PSK+ PL++LH R+ G +P NK L
Sbjct: 469 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 528
Query: 470 LDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKH 529
+D W + LY TP GSNDDWYWLYA + K LLV+NDEMRDHLFQLLG FFP+WKE+H
Sbjct: 529 VDRWNNANVLYATPTGSNDDWYWLYAAIKFKCLLVSNDEMRDHLFQLLGNDFFPKWKERH 588
Query: 530 QIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
Q+R S GL MPPP S+VIQESE G WH+P+ + EA R+WLC TRA++
Sbjct: 589 QVRFGFSDAGLEFYMPPPCSVVIQESEEGHWHIPIEAELNDEAERRWLCITRAKL 643
>gi|449466671|ref|XP_004151049.1| PREDICTED: proteinaceous RNase P 3-like [Cucumis sativus]
Length = 538
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/509 (48%), Positives = 322/509 (63%), Gaps = 15/509 (2%)
Query: 89 TMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV 148
T S K++KK++ +SPE + L CS+R D+ A+ L + A S + +Q H+N LLY+
Sbjct: 4 TGSAKARKKSKNQSPEVKFQLDLTDCSRRKDLLSAITLCETAVSEKLKFNQQHFNTLLYL 63
Query: 149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
CS S + + GF ++ + + V PNEAT T+VARLA AK D +
Sbjct: 64 CSTAISDPSLKES--------AVSFGFRVYNLLQSIGVIPNEATVTAVARLAAAKRDGDS 115
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
AF+LVK + + + P+LR+Y PAL FC+ DKAYEV+ HM +GV EEP++SALLK
Sbjct: 116 AFELVKTIGKYKVTPRLRTYDPALICFCENLEVDKAYEVEQHMNSAGVELEEPQISALLK 175
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIV 328
LS D K DKVYE LH+LR V+ VSEST KIIE WF S A++IG D+ +RE I+
Sbjct: 176 LSSDTGKEDKVYEYLHKLRRFVKCVSESTAKIIEGWFCSEKASDIGESTMDIGLIREAIL 235
Query: 329 RGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ 388
GGGWHG+GW+G G W V+RT + +G CC C ++LV +DI ETENFA SL+ LA +
Sbjct: 236 SNGGGWHGKGWIGKGNWVVKRTNVYSSGKCCCCAQQLVGVDISCAETENFAQSLAALAIE 295
Query: 389 REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSK 444
RE + +F FQEWL H DA++DGANVGL Q+ F+ Q+ VV L +MS K
Sbjct: 296 REAQPNFISFQEWLEVHNHCDAIVDGANVGLYQQNFADSGFNLSQVEAVVKELCKMSGGK 355
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLV 504
PLV+ H R ++K+++ W D G LY+TP GSNDDWYWLYA V K LLV
Sbjct: 356 -WPLVLWHNKRTRASLDN-SSHRKVVEEWIDKGVLYSTPIGSNDDWYWLYAAVKLKCLLV 413
Query: 505 TNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPV 564
TNDEMRDH+F+LLG F RWKEKHQIR + + L L MPPPYS+VIQESE GSWHVP
Sbjct: 414 TNDEMRDHIFELLGNDLFLRWKEKHQIRYTFVKGQLRLEMPPPYSVVIQESETGSWHVP- 472
Query: 565 ITGDDLEAPRQWLCATRARVKSLHSLFSN 593
I +D E R WLC TR V + + N
Sbjct: 473 IAANDSELERTWLCVTRPGVSAASDVAVN 501
>gi|449480803|ref|XP_004156000.1| PREDICTED: proteinaceous RNase P 3-like [Cucumis sativus]
Length = 538
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/509 (48%), Positives = 323/509 (63%), Gaps = 15/509 (2%)
Query: 89 TMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV 148
T S K++KK++ +SPE + L CS+R D+ A+ L + A S + +Q H+N LLY+
Sbjct: 4 TGSAKARKKSKNQSPEVKFQLDLTDCSRRKDLLSAITLCETAVSEKLKFNQQHFNTLLYL 63
Query: 149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
CS S + + GF ++ + + V PNEAT T+VARLA AK D +
Sbjct: 64 CSTAISDPSLKES--------AVSFGFRVYNLLQSIGVIPNEATVTAVARLAAAKRDGDS 115
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
AF+LVK + + + P+LR+Y PAL FC+ DKAYEV+ HM +GV EEP++SALLK
Sbjct: 116 AFELVKTIGKYKVTPRLRTYDPALICFCENLEVDKAYEVEQHMNSAGVELEEPQISALLK 175
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIV 328
LS D K DKVYE LH+LR +V+ VSEST KIIE WF S A++IG D+ +RE I+
Sbjct: 176 LSSDTGKEDKVYEYLHKLRRVVKCVSESTAKIIEGWFCSEKASDIGESTMDIGLIREAIL 235
Query: 329 RGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ 388
GGGWHG+GW+G G W V+RT + +G CC C ++LV +DI ETENFA SL+ LA +
Sbjct: 236 SNGGGWHGKGWIGKGNWVVKRTNVYSSGKCCCCAQQLVGVDISCAETENFAQSLAALAIE 295
Query: 389 REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSK 444
RE + +F FQEWL H DA++DGANVGL Q+ F+ Q+ VV L +MS K
Sbjct: 296 REAQPNFISFQEWLEVHNHCDAIVDGANVGLYQQNFADSGFNLSQVEAVVKELCKMSGGK 355
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLV 504
PLV+ H R ++K+++ W D G LY+TP GSNDDWYWLYA V K LLV
Sbjct: 356 -WPLVLWHNKRTRASLDN-SSHRKVVEEWIDKGVLYSTPIGSNDDWYWLYAAVKLKCLLV 413
Query: 505 TNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPV 564
TNDEMRDH+F+LLG F RWKEKHQIR + + L L MPPPYS+VIQESE GSWHVP
Sbjct: 414 TNDEMRDHIFELLGNDLFLRWKEKHQIRYTFVKGQLRLEMPPPYSVVIQESETGSWHVP- 472
Query: 565 ITGDDLEAPRQWLCATRARVKSLHSLFSN 593
I +D E R WLC TR V + + N
Sbjct: 473 IAANDSELERTWLCVTRPGVSAASDVAVN 501
>gi|359486225|ref|XP_003633416.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Vitis vinifera]
Length = 551
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 240/482 (49%), Positives = 315/482 (65%), Gaps = 14/482 (2%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR 163
EG R LD CSKR D+ A+ L++ A S L +H+N LLY+C+ SS+
Sbjct: 12 EGKFRFDLDTCSKRRDLSGAVALFESAVSQNFRLIHYHFNALLYLCTISIDEPSSKA--- 68
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
L L GF IF M+ V PNEAT T+VARLA AK D ++AF++V+ M + + P
Sbjct: 69 -----LALDYGFRIFDHMVNSGVTPNEATITAVARLAAAKSDGDLAFEVVRTMGKYELSP 123
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+LR+YGPAL+ FC +KA+ V+ HM GV PEEPEL+ALLK+S + + DKVY L
Sbjct: 124 RLRTYGPALYWFCANLEGEKAWAVEEHMVSMGVHPEEPELAALLKVSAEMGRGDKVYAYL 183
Query: 284 HRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSG 343
H+LRT VR VSEST +IIE WF A+E+G ++ + + E ++ GGGWHGQGW+G G
Sbjct: 184 HKLRTAVRSVSESTAEIIEGWFCGEAASEVGGVDCCLGAIEEVALKNGGGWHGQGWIGKG 243
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLG 403
KW V R ++D +G C SC E+L +DID ETE F S++ +A +REVRS+F +FQ+WL
Sbjct: 244 KWLVCRAKVDSSGQCGSCREQLATVDIDRAETETFLESVAAMAMEREVRSNFREFQDWLD 303
Query: 404 RHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGG 459
+H ++A++DGAN+GL Q+ FS QL+ VV L S KR PLVILH R
Sbjct: 304 KHADYEAIVDGANIGLYQQNFANGEFSIPQLDAVVKELYDRSQKKR-PLVILHNKRFR-K 361
Query: 460 PAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGT 519
++ N+KLL W G LYTTP GSNDDWYWLYA V K LLVTNDEMRDH+F+LLG+
Sbjct: 362 LSENASNRKLLQEWLTQGVLYTTPNGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLGS 421
Query: 520 SFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCA 579
SFF +WKE+HQ+R + + + LLMPP YS+ IQES G+WHVPV + E+ R W C
Sbjct: 422 SFFLKWKERHQVRYTFVKGNVKLLMPPSYSLFIQESVKGTWHVPVASESSDESLRTWHCI 481
Query: 580 TR 581
TR
Sbjct: 482 TR 483
>gi|356547141|ref|XP_003541975.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Glycine max]
Length = 550
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/495 (50%), Positives = 333/495 (67%), Gaps = 17/495 (3%)
Query: 93 KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K KKK R +PE + +L+ CSK D+ A+ LYDDA SN L+QHH+N LLY+CS
Sbjct: 6 KKKKKGCR-NPETKFQFELNSCSKAKDLRGAISLYDDAVSNNTRLNQHHFNALLYLCSNS 64
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
S + L GF F+ M V PNEAT T+VARLA AK D + AF+L
Sbjct: 65 VADPSLKP--------TALDYGFRAFRHMSALAVLPNEATVTAVARLAAAKGDADYAFEL 116
Query: 213 VKQM-KSFGIP-PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
VK M K++ P+LR+Y PALF FC++ + DKAYEV+ HM GV EE EL+ALLK+S
Sbjct: 117 VKSMGKNYNNALPRLRTYDPALFCFCEMLDADKAYEVEEHMNGVGVSLEEAELAALLKVS 176
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
+VDKVYE LHRLR+ VR VSEST +IE+WF A+E+G +D +V+EG++R
Sbjct: 177 ARCGRVDKVYEYLHRLRSSVRCVSESTAVVIEEWFRGSKASEVGEAEFDAGRVKEGVLRN 236
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQRE 390
GGGWHGQGW+G G W V RT + +G CC C ++LVC+DID ETE FA S++ LA +RE
Sbjct: 237 GGGWHGQGWVGKGDWVVSRTSVVADGHCCCCGQQLVCVDIDDVETEKFAGSVAALAFERE 296
Query: 391 VRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRM 446
V+++F++FQ WL +H ++A++DGAN+GL Q+ F+ QL+ VV L S K+
Sbjct: 297 VKANFSEFQAWLEKHASYEAIVDGANIGLYQQNFADGGFNISQLDDVVKELYNRS-GKKW 355
Query: 447 PLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTN 506
PLV+LH R+ G + P +++L++ W G LYTTP GSNDDWYWL+A V + LLVTN
Sbjct: 356 PLVVLHNKRLR-GLMENPSSRRLVEEWMKNGVLYTTPNGSNDDWYWLFAAVKLRCLLVTN 414
Query: 507 DEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVIT 566
DEMRDH+F+L+G++FF +WKE+HQ+ + + L L MPP YS+VIQESE G WHVP+++
Sbjct: 415 DEMRDHIFELIGSNFFNQWKERHQVHYTFVKGNLKLQMPPSYSLVIQESEKGYWHVPLVS 474
Query: 567 GDDLEAPRQWLCATR 581
G E+ R WLC TR
Sbjct: 475 GTSCESTRCWLCITR 489
>gi|168063907|ref|XP_001783909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664592|gb|EDQ51306.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 522
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 262/504 (51%), Positives = 342/504 (67%), Gaps = 18/504 (3%)
Query: 93 KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG-ITLSQHHYNVLLYVCSC 151
+ + K ++ +PE LR LDMCSK DV +AL +YD G I +Q++YN++LY+CS
Sbjct: 21 QPRAKNKQYAPEQDLRRALDMCSKHADVKQALEIYDKTCKEGKIAFNQYNYNIILYLCS- 79
Query: 152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ + ++ L +KRGFE+++ M + V PNEATFT+VARLAVAKED ++AFD
Sbjct: 80 --SAATDSLKPQKKQRILYMKRGFEVYEAMKSQGVPPNEATFTAVARLAVAKEDGDLAFD 137
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
+VKQM + P+LRSY PAL+ +CKL N KA+EVD HM +SGV EE EL ALLK+SV
Sbjct: 138 MVKQMAEANLSPRLRSYAPALYTYCKLKNHKKAFEVDDHMKKSGVALEESELEALLKVSV 197
Query: 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWD----VSKVREGI 327
A DKVY +LHRLRT VR VS S ++I+ WF S AA G NW+ V++
Sbjct: 198 GAGLEDKVYSLLHRLRTTVRDVSPSAVEVIQQWFTSSAAATAGKSNWEHLPGPEYVKKAT 257
Query: 328 VRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC 387
GGGWHG GWLG G W V+ + +D++GVC C E L ID+DP+ETE FA SLS +AC
Sbjct: 258 ESCGGGWHGLGWLGRGTWEVKSSVVDDHGVCQECGEPLATIDLDPQETEMFAQSLSRMAC 317
Query: 388 QREVR-SDFNKFQEWLGRHGPFDAVIDGANVGLVNQHN----FSFYQLNTVVNRLRQMSP 442
QRE + ++F KFQ WL RHGPFDA++DGANVGL N + F+FYQLN+VV +++
Sbjct: 318 QREAKNNEFKKFQGWLDRHGPFDAIVDGANVGLYNSNTPNGGFNFYQLNSVVTGIQKRLG 377
Query: 443 SKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDW--YWLYATVNCK 500
KR PL++LH R GGPA ++L W++ ++YTTP GSNDDW YWLYA V +
Sbjct: 378 LKREPLILLHHRRTKGGPADSSFAARMLSNWKENNSIYTTPTGSNDDWYVYWLYAAVRFR 437
Query: 501 SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ-IRLSVSRDGLNLLMPPPYSIVIQESENGS 559
+LVTNDEMRDHLF LLG FFP+WKE+HQ +R +++R+GL MPPP+S VIQES GS
Sbjct: 438 CVLVTNDEMRDHLFSLLGNDFFPKWKERHQVVRYTINREGLVFHMPPPFSTVIQESHKGS 497
Query: 560 WHVPVI--TGDDLEAPRQWLCATR 581
WHVP +D+ PR+WLC TR
Sbjct: 498 WHVPKSGKNDEDVLVPREWLCVTR 521
>gi|224119796|ref|XP_002331163.1| predicted protein [Populus trichocarpa]
gi|222873246|gb|EEF10377.1| predicted protein [Populus trichocarpa]
Length = 461
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/472 (52%), Positives = 324/472 (68%), Gaps = 11/472 (2%)
Query: 93 KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K K+ + +S E LR +LDMCSKRGDV A++LYD A+ GI + Q+HY VLLY+CS
Sbjct: 1 KGSKQDKVDSSELKLRVRLDMCSKRGDVIAAIQLYDLAQREGIKMGQYHYAVLLYLCSSA 60
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
SE + L+RG EIF++M +KV NEAT T+VAR+A++ + ++AF++
Sbjct: 61 AFSEDVK--------KYALQRGCEIFEKMCKEKVPINEATLTAVARMAMSIGNGDLAFEM 112
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
VKQM + GI PKLRSYGPAL FC G+ DKA+ V+ HM E GV PEEPEL ALL++SV+
Sbjct: 113 VKQMDALGINPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVE 172
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGG 332
K DKVY +LH+LR +VR+VS ST II WF+S A+ +G WD V+E I GGG
Sbjct: 173 GGKGDKVYYLLHKLRRIVRRVSPSTAGIIVRWFNSKAASRVGKTKWD---VKEAIENGGG 229
Query: 333 GWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR 392
GWHGQGWLG GKW V T + +G+C C ++L ID+D ETE FA S++++A +R+
Sbjct: 230 GWHGQGWLGKGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRDRD 289
Query: 393 SDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILH 452
S F +FQ+WL +GPF+AVIDGAN G+ NQ F ++N VVN +RQ PSK+ PL++LH
Sbjct: 290 SSFQRFQKWLDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLH 349
Query: 453 KGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDH 512
R++G P NK ++ W++ ALY TP GSNDDWYWLYA + K L+VTNDEMRDH
Sbjct: 350 NKRITGRKMDGPVNKAFIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDH 409
Query: 513 LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPV 564
F LLG FFPRWKE+HQ+ + G + MPPP S+VIQESE G WH+P+
Sbjct: 410 TFHLLGNDFFPRWKERHQVHFRFTDAGPDFDMPPPCSVVIQESEKGHWHIPI 461
>gi|356511361|ref|XP_003524395.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g32230, mitochondrial-like [Glycine max]
Length = 540
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 246/513 (47%), Positives = 316/513 (61%), Gaps = 37/513 (7%)
Query: 93 KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-- 150
+ KKK ++SPE L++ LDMCSKRGDV AL LYD A S G+ L QHHY +LL++CS
Sbjct: 14 RVKKKKDKDSPEVKLKNGLDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTLLLFLCSSA 73
Query: 151 -------CKCGSE--------SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS 195
K GS SS E+ L+RGF++++ M DKV NEA
Sbjct: 74 AVGVVRPAKSGSGARTLNALVSSNELVSEDVKRYALQRGFQVYENMRVDKVQMNEAAXG- 132
Query: 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255
+MAF++VKQM LRSYGPAL FC G DKA+ V+ HM G
Sbjct: 133 -----------DMAFEMVKQMX-------LRSYGPALSTFCNNGEIDKAFAVEKHMLXHG 174
Query: 256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGV 315
V PEEPEL AL ++SV A DK+Y +LH+LR +VR+VS +T +I D F + A+ +G
Sbjct: 175 VYPEEPELEALSRVSVGAGNSDKIYYVLHKLRIIVRKVSPTTGSLIFDLFKNKQASRVGK 234
Query: 316 LNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRET 375
WD + E GGG HGQGWLG GKW V T I +G+C C +L ID+DP ET
Sbjct: 235 RKWDKRLIMEATENNGGGRHGQGWLGKGKWEVVHTTIGNDGLCKCCGVQLTTIDLDPVET 294
Query: 376 ENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVN 435
+NFA+ +++LA RE S+F KFQ+ L +GPF+AV+D ANVGL Q F ++N V N
Sbjct: 295 QNFANLVASLAVMREKGSNFQKFQKSLXYYGPFEAVVDAANVGLFGQGRFMPQKINAVAN 354
Query: 436 RLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYA 495
+ Q PSK+ PL+ILH R G P N+ L+D W + ALY TP GSND+WYWLYA
Sbjct: 355 EICQTLPSKKFPLIILHNKRSKGDKMDEPINRSLIDKWNNADALYATPSGSNDNWYWLYA 414
Query: 496 TVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLL-MPPPYSIVIQE 554
+ + LLVTNDEMRDHLFQLLG FFP+WKE+HQ+R S S G + MPPP S+VIQE
Sbjct: 415 AIKFRCLLVTNDEMRDHLFQLLGNDFFPKWKERHQVRFSFSDTGSPVFHMPPPCSVVIQE 474
Query: 555 SENGSWHVPVITGDDLEAPRQWLCATRARVKSL 587
S+ G WH+P+ + E R+WLC TRA++ L
Sbjct: 475 SDEGHWHIPIXAELNYEPERRWLCITRAKLDVL 507
>gi|297738805|emb|CBI28050.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/419 (56%), Positives = 299/419 (71%)
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
E+ L+RGFEI+++M +KV NEAT TSVAR+A++ + +MAFD+VKQMK GI P
Sbjct: 239 EDFKKYALRRGFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDMAFDMVKQMKPLGINP 298
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+LRSYGPAL FC G+ +KA+ V+ HM E GV PEEPEL ALL++ ++A K DKVY +L
Sbjct: 299 RLRSYGPALSAFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLRVGIEAGKSDKVYYVL 358
Query: 284 HRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSG 343
H+LRT VRQVS ST +IE WF S AA G NWD + E IV GGGGWHGQGWLG G
Sbjct: 359 HKLRTSVRQVSHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKG 418
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLG 403
KW V T + +G+C C E+L ID+DP ETE FA S++++A +RE S F KFQ+WL
Sbjct: 419 KWNVSHTNVGADGLCLCCGEKLATIDLDPTETEKFAESVASIAIKREKNSSFQKFQKWLD 478
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
+GP++AV+D ANVGL +Q F ++N +VN +RQM PSK+ PL+ILH R++G
Sbjct: 479 YYGPYEAVVDAANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPLIILHNKRITGKKMDE 538
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFP 523
P N+ L++ W++ ALYTTP GSNDDWYWLYA + K L+VTNDEMRDH+FQLLG FFP
Sbjct: 539 PANRALIEKWKNADALYTTPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHIFQLLGNDFFP 598
Query: 524 RWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRA 582
+WKE+HQ+ S S G MPPP S++IQESENG WH+PV + D E R WLC TRA
Sbjct: 599 KWKERHQVHFSFSDSGPVFHMPPPCSVIIQESENGHWHIPVASEHDSEGERTWLCVTRA 657
>gi|359484351|ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Vitis vinifera]
Length = 816
Score = 473 bits (1217), Expect = e-130, Method: Compositional matrix adjust.
Identities = 251/512 (49%), Positives = 331/512 (64%), Gaps = 12/512 (2%)
Query: 81 ESSAPNTGTMSNKSKKKARRESPEGVL---RHKLDMCSKRGDVFEALRLYDDARSNGITL 137
ES P + + K + SP+ VL R ++ + D+ ++ D
Sbjct: 213 ESKIPVSNNAMSVYSTKIHQNSPKKVLNSNRSAFEVA--KDDLDGSITEMDKLSQVSNCF 270
Query: 138 SQHHYNVLLYVCSCKCGSESSENGDREND-------SNLGLKRGFEIFQQMITDKVDPNE 190
+Q + +L + G + S N +N+ L+RGFEI+++M +KV NE
Sbjct: 271 NQSNSQLLEGQMHLRKGVDDSTNKKEDNEIRVSEDFKKYALRRGFEIYEKMCLEKVPMNE 330
Query: 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250
AT TSVAR+A++ + +MAFD+VKQMK GI P+LRSYGPAL FC G+ +KA+ V+ H
Sbjct: 331 ATLTSVARMAMSMGNGDMAFDMVKQMKPLGINPRLRSYGPALSAFCNNGDIEKAFGVEEH 390
Query: 251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
M E GV PEEPEL ALL++ ++A K DKVY +LH+LRT VRQVS ST +IE WF S A
Sbjct: 391 MLEHGVYPEEPELEALLRVGIEAGKSDKVYYVLHKLRTSVRQVSHSTANLIEKWFKSNAA 450
Query: 311 AEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDI 370
A G NWD + E IV GGGGWHGQGWLG GKW V T + +G+C C E+L ID+
Sbjct: 451 AAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKGKWNVSHTNVGADGLCLCCGEKLATIDL 510
Query: 371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQL 430
DP ETE FA S++++A +RE S F KFQ+WL +GP++AV+D ANVGL +Q F ++
Sbjct: 511 DPTETEKFAESVASIAIKREKNSSFQKFQKWLDYYGPYEAVVDAANVGLFSQRRFIPSKV 570
Query: 431 NTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDW 490
N +VN +RQM PSK+ PL+ILH R++G P N+ L++ W++ ALYTTP GSNDDW
Sbjct: 571 NAIVNGIRQMLPSKKWPLIILHNKRITGKKMDEPANRALIEKWKNADALYTTPTGSNDDW 630
Query: 491 YWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSI 550
YWLYA + K L+VTNDEMRDH+FQLLG FFP+WKE+HQ+ S S G MPPP S+
Sbjct: 631 YWLYAAIKFKCLIVTNDEMRDHIFQLLGNDFFPKWKERHQVHFSFSDSGPVFHMPPPCSV 690
Query: 551 VIQESENGSWHVPVITGDDLEAPRQWLCATRA 582
+IQESENG WH+PV + D E R WLC TRA
Sbjct: 691 IIQESENGHWHIPVASEHDSEGERTWLCVTRA 722
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 40/58 (68%)
Query: 93 KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS 150
K KK + +S EG+LR L+MCSK GDV AL LYD A GI L Q+HY VLLY+CS
Sbjct: 105 KGSKKNKVDSQEGLLRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCS 162
>gi|224080794|ref|XP_002306233.1| predicted protein [Populus trichocarpa]
gi|222849197|gb|EEE86744.1| predicted protein [Populus trichocarpa]
Length = 557
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/498 (47%), Positives = 326/498 (65%), Gaps = 20/498 (4%)
Query: 91 SNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS 150
+NK K K+ ++PE + L+ SK D+ A+ LYD A S L+QH++N LLY+CS
Sbjct: 5 ANKKKPKSN-QTPESQFSYNLNFYSKSKDLHSAISLYDTAISQNTRLNQHNFNTLLYLCS 63
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
S+++ L L+ GF +F M+++ + PNEA+ T+VARLA AK D + AF
Sbjct: 64 ISLNDPSTKD--------LSLQYGFRVFDHMVSNGIKPNEASITAVARLAAAKGDGDYAF 115
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
DLVK + + P+LR+Y PALF +C+ DKAYEV+ HM GV EE E++ALLK+S
Sbjct: 116 DLVKNIGVYNELPRLRTYDPALFCYCEKLEGDKAYEVEEHMRRIGVGLEEGEIAALLKVS 175
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
V+ ++ ++VYE L +LR +VR V E T K+IE WF+ + + + DV VRE + R
Sbjct: 176 VETRREERVYEYLQKLRKMVRCVREETAKVIEHWFEVFEGNGVEL---DVGLVREAVSRN 232
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQRE 390
GGGWHG GW+G KW V R ++ G CC C E+LV +DID ETE FA S++ LA +RE
Sbjct: 233 GGGWHGLGWIGKEKWVVRRGSVNAGGKCCCCGEQLVSVDIDDDETERFAESVAGLAMERE 292
Query: 391 VRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSF-YQLNTVVNRLRQMSPSKR 445
V+++F++FQ WL +H ++A++DGAN+GL Q+ FS QL+ V+ L S K+
Sbjct: 293 VKANFSEFQNWLEKHANYEAIMDGANIGLYQQNFAEGGFSISQQLDAVIKDLYNQS-GKK 351
Query: 446 MPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVT 505
PLVILH R+ Q P ++L+ W + LYTTP GSNDDWYWLYA V + LLVT
Sbjct: 352 GPLVILHNKRLRA-LLQNPSTRELIQEWIEKDVLYTTPHGSNDDWYWLYAAVKLRCLLVT 410
Query: 506 NDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVI 565
NDEMRDH+F+LLG+ FF +WKE+HQ+R + + L L MPP +SIVIQESENGSWHVPV
Sbjct: 411 NDEMRDHIFELLGSDFFVKWKERHQVRYTFVKGNLELQMPPLFSIVIQESENGSWHVPV- 469
Query: 566 TGDDLEAPRQWLCATRAR 583
GD ++P+ WLC +R R
Sbjct: 470 AGDGNDSPQSWLCVSRPR 487
>gi|222622584|gb|EEE56716.1| hypothetical protein OsJ_06217 [Oryza sativa Japonica Group]
Length = 711
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 252/535 (47%), Positives = 333/535 (62%), Gaps = 70/535 (13%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNV---------LLYVCSCKCG------------- 154
RGDV A+ LYD A GI + QHHY+V L +V K G
Sbjct: 175 RGDVIGAINLYDSAVKEGIKMGQHHYSVLLYLCSSAALGFVQPAKSGNAGSGIASIGQLH 234
Query: 155 -SESSENGDREND--------------------SNLGLK-----------------RGFE 176
S + G+ E D S+ G + RGFE
Sbjct: 235 SSSTQSVGNLEGDDVQSEGHSEDQEGNKTDLFASDDGTEKPSRIPVSDELREYARTRGFE 294
Query: 177 IFQQMIT--DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
IF++M + +KV NE+ T+VAR+A++ + +MAFD+VKQMK GI PKLRSYGPAL
Sbjct: 295 IFEKMRSEEEKVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGPALTA 354
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
FC GN +KA+EV+AHM ESGV PEEPEL LLK SV A++ DKVY +LH+ RT VRQ S
Sbjct: 355 FCNSGNVEKAFEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTVRQAS 414
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
+T K++EDWF S A+++G WD + + I GGGWHG GWLG GKW + + ID
Sbjct: 415 STTAKLLEDWFQSPTASKVGKRKWDSGAITKAIENNGGGWHGLGWLGRGKWTISHSHIDR 474
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDG 414
NG C +C E+L ID+DP+ETE+FA+ ++ LA +RE RS+F+ FQ+WL +HGPFDAV+DG
Sbjct: 475 NGACLACGEKLTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDAVVDG 534
Query: 415 ANVGLVNQHNFSFY-------QLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
ANVGL + + S Q+N V + +RQ S+++PL+++H ++G Q P N+
Sbjct: 535 ANVGLFSHKHISLSLYLFLTGQINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNR 594
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKE 527
KL++ W+ A+Y TP GSNDDWYWLYA + CK L+VTNDEMRDH FQLL FFP+WKE
Sbjct: 595 KLVEKWKLSNAIYATPTGSNDDWYWLYAAIRCKCLMVTNDEMRDHTFQLLERDFFPKWKE 654
Query: 528 KHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGD-DLEAPRQWLCATR 581
+HQ+R + + L MPPP S+VIQESENG WH+PV++ + LE R WLC TR
Sbjct: 655 RHQVRFNFEDSCVTLQMPPPCSVVIQESENGQWHIPVVSEEGSLEKDRTWLCVTR 709
>gi|357139247|ref|XP_003571195.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Brachypodium distachyon]
Length = 729
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 253/550 (46%), Positives = 340/550 (61%), Gaps = 52/550 (9%)
Query: 92 NKSKKKARRESPEGV-LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS 150
N + K + S +GV LR LD+CSKRGDV A+ LYD A GI + QHHYNVLLY+CS
Sbjct: 172 NLKRGKRLKSSEQGVMLRVALDLCSKRGDVIGAINLYDSAVKEGIRMGQHHYNVLLYLCS 231
Query: 151 ---------CKCGSE------SSENGDRENDSNL-------------------------- 169
K GS S E+ DSN+
Sbjct: 232 SAALGIVQPAKSGSAGKLDPASVESSGHPEDSNVPEGHVQNQEGNETILFPSVQIGSSIP 291
Query: 170 --------GLKRGFEIFQQMITDK--VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
RGFEIF++M ++K V ++A T VAR+A + + +MAF++VKQMK
Sbjct: 292 VSDEIREYARTRGFEIFEKMCSEKERVAMSKAALTGVARMATSMGNGDMAFEIVKQMKEL 351
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
GI PKLRSYGPAL FC GN +KA+EV+AHM ESGV PEEPEL LL+ SV A++ D+V
Sbjct: 352 GITPKLRSYGPALTAFCDSGNVEKAFEVEAHMLESGVTPEEPELEMLLRASVVARRGDRV 411
Query: 280 YEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGW 339
Y +LH+ R VRQVS ST + IE WF S A+++G WD + + I GGGWHG GW
Sbjct: 412 YYLLHKFRNTVRQVSPSTAEQIEAWFRSSTASKVGKRKWDACALAKEIENHGGGWHGLGW 471
Query: 340 LGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQ 399
LG GKW + R+ ID+NGVC +C +L ID+DP+ETE+FA+ ++ LA +RE S+F+ FQ
Sbjct: 472 LGRGKWTITRSHIDKNGVCLACGGKLAIIDLDPKETEDFATLVATLALKRERTSNFDNFQ 531
Query: 400 EWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGG 459
+WL HGPF+AV+D ANVGL + + S ++N V + +++ PS++ PL+++H ++G
Sbjct: 532 KWLDDHGPFEAVMDAANVGLFSHRHLSVSKVNAVADAIQKRFPSRKWPLIVVHNRHLTGK 591
Query: 460 PAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGT 519
+ P N K ++ W+ +Y TP GSNDDWYWLYA + K L++TNDEMRDH FQLL
Sbjct: 592 HMKNPANHKWVENWKRADIIYETPTGSNDDWYWLYAAIRWKCLIITNDEMRDHTFQLLEK 651
Query: 520 SFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCA 579
FFP+WKE+HQ+R S + MPPP S+VIQESE G WH+P+ LE R WLC
Sbjct: 652 DFFPKWKERHQVRFSFGDSCVTFQMPPPCSVVIQESEKGHWHIPLSEESLLEEERTWLCV 711
Query: 580 TRARVKSLHS 589
R ++L++
Sbjct: 712 MRRSSQALYN 721
>gi|218190470|gb|EEC72897.1| hypothetical protein OsI_06719 [Oryza sativa Indica Group]
Length = 719
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/412 (54%), Positives = 299/412 (72%), Gaps = 3/412 (0%)
Query: 173 RGFEIFQQMITD--KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
RGFEIF++M ++ KV NE+ T+VAR+A++ + +MAFD+VKQMK GI PKLRSYGP
Sbjct: 306 RGFEIFEKMRSEEEKVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGP 365
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
AL FC GN +KA+EV+AHM ESGV PEEPEL LLK SV A++ DKVY +LH+ RT V
Sbjct: 366 ALTAFCNSGNVEKAFEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTV 425
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERT 350
RQ S +T K++EDWF S A+++G WD + + I GGGWHG GWLG GKW + +
Sbjct: 426 RQASSTTAKLLEDWFQSPTASKVGKRKWDAGAITKAIENNGGGWHGLGWLGRGKWTISHS 485
Query: 351 QIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDA 410
ID NG C +C E+L ID+DP+ETE+FA+ ++ LA +RE RS+F+ FQ+WL +HGPFDA
Sbjct: 486 HIDRNGACLACGEKLTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDA 545
Query: 411 VIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLL 470
V+DGANVGL + + S ++N V + +RQ S+++PL+++H ++G Q P N+KL+
Sbjct: 546 VVDGANVGLFSHKHISLSKINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNRKLV 605
Query: 471 DIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ 530
+ W+ A+Y TP GSNDDWYWLYA + CK L+VTNDEMRDH FQLL FFP+WKE+HQ
Sbjct: 606 EKWKLSNAIYATPTGSNDDWYWLYAAIRCKCLMVTNDEMRDHTFQLLERDFFPKWKERHQ 665
Query: 531 IRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGD-DLEAPRQWLCATR 581
+R + + L MPPP S+VIQESENG WH+PV++ + LE R WLC TR
Sbjct: 666 VRFNFEDSCVTLQMPPPCSVVIQESENGQWHIPVVSEEGSLEKDRTWLCVTR 717
>gi|115445507|ref|NP_001046533.1| Os02g0273800 [Oryza sativa Japonica Group]
gi|47848046|dbj|BAD21831.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536064|dbj|BAF08447.1| Os02g0273800 [Oryza sativa Japonica Group]
gi|215697065|dbj|BAG91059.1| unnamed protein product [Oryza sativa Japonica Group]
gi|326324779|dbj|BAJ84577.1| P0413A11.14-1 [Oryza sativa Indica Group]
Length = 719
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 225/412 (54%), Positives = 299/412 (72%), Gaps = 3/412 (0%)
Query: 173 RGFEIFQQMITD--KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
RGFEIF++M ++ KV NE+ T+VAR+A++ + +MAFD+VKQMK GI PKLRSYGP
Sbjct: 306 RGFEIFEKMRSEEEKVPMNESALTAVARMAMSMGNGDMAFDVVKQMKDQGIAPKLRSYGP 365
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
AL FC GN +KA+EV+AHM ESGV PEEPEL LLK SV A++ DKVY +LH+ RT V
Sbjct: 366 ALTAFCNSGNVEKAFEVEAHMLESGVRPEEPELETLLKASVAAQQGDKVYYLLHKFRTTV 425
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERT 350
RQ S +T K++EDWF S A+++G WD + + I GGGWHG GWLG GKW + +
Sbjct: 426 RQASSTTAKLLEDWFQSPTASKVGKRKWDSGAITKAIENNGGGWHGLGWLGRGKWTISHS 485
Query: 351 QIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDA 410
ID NG C +C E+L ID+DP+ETE+FA+ ++ LA +RE RS+F+ FQ+WL +HGPFDA
Sbjct: 486 HIDRNGACLACGEKLTIIDLDPKETEDFATLVAKLAIKRERRSNFDNFQKWLEKHGPFDA 545
Query: 411 VIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLL 470
V+DGANVGL + + S ++N V + +RQ S+++PL+++H ++G Q P N+KL+
Sbjct: 546 VVDGANVGLFSHKHISLSKINIVADVIRQRFQSRKLPLIVVHNRHLTGERMQKPSNRKLV 605
Query: 471 DIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ 530
+ W+ A+Y TP GSNDDWYWLYA + CK L+VTNDEMRDH FQLL FFP+WKE+HQ
Sbjct: 606 EKWKLSNAIYATPTGSNDDWYWLYAAIRCKCLMVTNDEMRDHTFQLLERDFFPKWKERHQ 665
Query: 531 IRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGD-DLEAPRQWLCATR 581
+R + + L MPPP S+VIQESENG WH+PV++ + LE R WLC TR
Sbjct: 666 VRFNFEDSCVTLQMPPPCSVVIQESENGQWHIPVVSEEGSLEKDRTWLCVTR 717
>gi|297799862|ref|XP_002867815.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313651|gb|EFH44074.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 517
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 236/507 (46%), Positives = 319/507 (62%), Gaps = 25/507 (4%)
Query: 91 SNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVC 149
S +KK+ +PE L L CSKR D+ AL LYD A S+ I L+Q H+ LLY+C
Sbjct: 17 SKPNKKQKGSRNPEKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLC 76
Query: 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA 209
S S + L + RGF+IF +M++ + PNE++ T+VARLA AK D + A
Sbjct: 77 SAFISDPSLQT--------LAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYA 128
Query: 210 FDLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
F LVK + G P+LR+Y PAL FC+ +K YEV+ HM SG++ EE E+SALL
Sbjct: 129 FKLVKDIVVVGGVSVPRLRTYAPALLCFCESLEAEKGYEVEEHMDASGIMLEEAEISALL 188
Query: 268 KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVRE 325
K+S + +KVY LH+LR + VSE T K IE+WF V A+EI + D+ +R
Sbjct: 189 KVSAATGRENKVYRYLHKLRECIGCVSEETSKTIEEWFYGVKASEISDKTIGCDIELLRA 248
Query: 326 GIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNL 385
+ + GGGWHG GW+G GKW V++ + G C SC E L C+D + ETENF +SL L
Sbjct: 249 AVSKNGGGWHGLGWVGEGKWIVKKGNVSPAGKCLSCGEHLACVDTNEVETENFVNSLVAL 308
Query: 386 ACQREVR-------SDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVV 434
A +R+ + +DF++FQEWL +HG ++A++DGAN+GL Q+ FS QL VV
Sbjct: 309 AMERKAKMNSCEPMADFSEFQEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVV 368
Query: 435 NRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLY 494
L S +K+ PLV+LHK RV+ P ++ L++ W D LY TPPGSNDDWYWLY
Sbjct: 369 KELYNKSGNKKQPLVLLHKKRVNALLGN-PNHRNLVEEWIDNNVLYATPPGSNDDWYWLY 427
Query: 495 ATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQE 554
A K LLVTNDEMRDH+F+LL SFF +WKE+HQ+R + + L L MPPP+S+VIQE
Sbjct: 428 AAAKLKCLLVTNDEMRDHIFELLSNSFFEKWKERHQVRFTFVKGCLKLEMPPPFSVVIQE 487
Query: 555 SENGSWHVPVITGDDLEAPRQWLCATR 581
SE GSWH+P+ + D+ E+ R W+C TR
Sbjct: 488 SEKGSWHIPIKSQDNEESSRSWMCITR 514
>gi|255576329|ref|XP_002529057.1| multidrug resistance pump, putative [Ricinus communis]
gi|223531469|gb|EEF33301.1| multidrug resistance pump, putative [Ricinus communis]
Length = 561
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/504 (46%), Positives = 317/504 (62%), Gaps = 22/504 (4%)
Query: 87 TGTMSN----KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHY 142
TGT + K K + ++PE + L+ SK D+ A+ LY A SN L+QHHY
Sbjct: 3 TGTTTTAPVGKKKPNKKNQTPESQFNYNLNFYSKSKDLNSAISLYKTAISNKTQLNQHHY 62
Query: 143 NVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202
N LLY+CS S + L L+ GF+IF+ M+ + NEA+ T++ARLA A
Sbjct: 63 NTLLYLCSISLNDPS--------EKELALQNGFDIFEHMVATGIKRNEASITAIARLAAA 114
Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
K D + AF+L+K M P+LR+Y P LF FC+ KAYEV+ H+ G+ EE E
Sbjct: 115 KGDGDYAFNLIKNMLVDNQLPRLRTYDPVLFCFCEKLEAFKAYEVEDHIVSMGMNLEELE 174
Query: 263 LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSK 322
++ALLK+SV+ K ++VY L +LR VR V E T KI+EDWF E+ DV
Sbjct: 175 IAALLKVSVETKNKERVYGYLQKLRKTVRCVKEETAKIVEDWFKDF---EVNGKELDVGL 231
Query: 323 VREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL 382
VR+ +V+ GGGWHG GW+ GKW V+R +D +G CC C E L C+DID ETE FA SL
Sbjct: 232 VRKAVVKNGGGWHGLGWIEKGKWGVKRGNMDMDGRCCCCGESLACVDIDDLETERFAGSL 291
Query: 383 SNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLR 438
+ LA +REV+++F++FQ+WL ++ +DA++DGANVGL Q+ FS QL+ VV L
Sbjct: 292 AGLAMEREVKANFSEFQDWLDKNADYDAIVDGANVGLYQQNFAEGGFSISQLDAVVKEL- 350
Query: 439 QMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN 498
S + PL++LH RV + P + L+ W + LYTTP GSNDDWYWLYA V
Sbjct: 351 -YDRSGKWPLIVLHNKRVRA-ILENPSQRNLIQEWTEKDILYTTPHGSNDDWYWLYAAVK 408
Query: 499 CKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENG 558
K LLVTNDEMRDH+F+LLG+SFF +WKE+HQ+R + + L L MPPP+S++IQESE G
Sbjct: 409 LKCLLVTNDEMRDHIFELLGSSFFLKWKERHQVRYTFVKGKLKLQMPPPFSVLIQESEKG 468
Query: 559 SWHVPVITGDDLEAPRQWLCATRA 582
SWHVP+ + ++ + WLC TR+
Sbjct: 469 SWHVPIAGDGNEDSAQSWLCITRS 492
>gi|224103055|ref|XP_002312906.1| predicted protein [Populus trichocarpa]
gi|222849314|gb|EEE86861.1| predicted protein [Populus trichocarpa]
Length = 482
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/486 (47%), Positives = 316/486 (65%), Gaps = 19/486 (3%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
++PE + L+ SK D+ A+ LYD A S L+QH +N LLY+CS S+E
Sbjct: 11 QTPESQFNYNLNFYSKSKDLHSAISLYDTAISQDTRLNQHGFNTLLYLCSVSLNDPSTEE 70
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
L L+ GF IF M+++ + PNEA+ T+VARLA AK D + AFDLVK + ++
Sbjct: 71 --------LALRCGFRIFDHMVSNGIKPNEASITAVARLAAAKGDGDYAFDLVKNVGAYN 122
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
P+LR+Y PALF FC+ KAYEV+ HMG GV EE E++ALLK+SV+++ +VY
Sbjct: 123 ELPRLRTYDPALFCFCEKLEAHKAYEVEEHMGSMGVGLEEGEIAALLKVSVESRNEKRVY 182
Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL 340
L +LR +VR V T K+IE WF + + + + DV VRE + R GGGWHG GW+
Sbjct: 183 GYLQKLRKMVRCVRGETAKVIEHWFAVFEGSGVEL---DVDLVREAVSRNGGGWHGLGWI 239
Query: 341 GSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQE 400
G GKW ++R +D G CC C E+LV +DID ETE FA S++ LA QREV+++F++FQ
Sbjct: 240 GKGKWVLKRGSVDVGGKCCCCGEQLVSVDIDDDETERFAESVAGLAMQREVKANFSEFQN 299
Query: 401 WLGRHGPFDAVIDGANVGLVNQH----NFSF-YQLNTVVNRLRQMSPSKRMPLVILHKGR 455
WL H ++A++DGAN+GL Q+ FS QL+ VV L S K+ PL+I+H R
Sbjct: 300 WLEEHANYEAIVDGANIGLYQQNFAEGGFSISQQLDAVVKDLYNQS-GKKWPLIIMHNKR 358
Query: 456 VSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQ 515
+ Q P ++L+ W + LYTTP GSNDDWYWLYA V + LLVTNDEMRDH+F+
Sbjct: 359 LRA-LLQNPSTRELIQEWIEKDVLYTTPQGSNDDWYWLYAAVKLRCLLVTNDEMRDHIFE 417
Query: 516 LLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQ 575
LLG+ FF +WKE+HQ+R + + L L MPP +S+VIQESE+GSWHVPV G+ ++P+
Sbjct: 418 LLGSDFFIKWKERHQVRYTFVKGKLELQMPPLFSVVIQESEHGSWHVPV-AGNGNDSPQS 476
Query: 576 WLCATR 581
WLC +R
Sbjct: 477 WLCVSR 482
>gi|255546443|ref|XP_002514281.1| multidrug resistance pump, putative [Ricinus communis]
gi|223546737|gb|EEF48235.1| multidrug resistance pump, putative [Ricinus communis]
Length = 745
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/421 (54%), Positives = 297/421 (70%)
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
E+ L+RGFEI+++M DK+ NEAT T+VAR+A++ + +MAFD+VKQMK G+ P
Sbjct: 234 EDIKKYALERGFEIYEKMCMDKIPMNEATLTAVARIAMSMGNGDMAFDMVKQMKLLGLNP 293
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+LRSYGPAL FC G+ DKA+ V+ HM + GV PEEPEL ALL++SV+A K DKVY +L
Sbjct: 294 RLRSYGPALAAFCSSGDADKAFTVEKHMLDHGVHPEEPELEALLRVSVEAGKGDKVYYLL 353
Query: 284 HRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSG 343
H+LRT VR+VS ST II +WF S A+ +G WD V+E I GGGGWHGQGWLG G
Sbjct: 354 HKLRTSVRKVSPSTANIIIEWFKSKAASRVGKTKWDKRVVKEAIANGGGGWHGQGWLGKG 413
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLG 403
KW V + + + C SC ++L ID+DP ETE+FA S++++A +RE S F KFQ+WL
Sbjct: 414 KWTVSCSSVGVDAFCKSCGKKLATIDLDPTETESFAESVASIAIKREKDSSFQKFQKWLD 473
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
+GPF+AV+DGANVGL+ Q F ++N + N +RQ PSK+ PL++LH RV+G
Sbjct: 474 YYGPFEAVVDGANVGLLGQKRFIPSKINAIANGIRQKLPSKKWPLIVLHNRRVTGHKMDE 533
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFP 523
P NK L++ W+ ALY TP GSNDDWYWLYA + K L+VTNDEMRDH FQLLG FFP
Sbjct: 534 PVNKSLVEKWKHADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFP 593
Query: 524 RWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRAR 583
+WKE+HQ+ S G MPP +S+VIQESENG WH+P+ + D E R WLC TRA+
Sbjct: 594 KWKERHQVHFGFSDAGPVFHMPPSFSVVIQESENGHWHIPIASDTDYEPERAWLCITRAK 653
Query: 584 V 584
+
Sbjct: 654 L 654
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 91 SNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS 150
S K K+ + + E R +LD C KRGDV A++LYD A+ GI + Q+HY VLLY+CS
Sbjct: 41 SGKWSKRNKGDPQEVKFRLELDKCCKRGDVMAAIQLYDLAQREGIKMGQYHYTVLLYLCS 100
>gi|4263696|gb|AAD15382.1| hypothetical protein [Arabidopsis thaliana]
Length = 416
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 243/364 (66%), Positives = 296/364 (81%), Gaps = 12/364 (3%)
Query: 68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLY 127
LCTL + +S+A + +S K+KKKA ++SPE +L+ KLDMCSK+GDV EALRLY
Sbjct: 34 LCTLPL---AAAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLY 90
Query: 128 DDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
D+AR NG+ LSQ+HYNVLLYVCS + +ESS N GL RGF+IF+QMI DKV
Sbjct: 91 DEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIFKQMIVDKV 142
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+ G+ DKAYE
Sbjct: 143 VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 202
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD 306
VDAHM ES VVPEEPEL+ALLK+S+D K DKVY+ L RLR LVRQVS+STF +IE+WF
Sbjct: 203 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 262
Query: 307 SVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLV 366
S A + GV WDV K+R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC C E+LV
Sbjct: 263 SEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLV 322
Query: 367 CIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFS 426
CIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+GLVNQ +FS
Sbjct: 323 CIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFS 382
Query: 427 FYQL 430
F+Q+
Sbjct: 383 FFQV 386
>gi|449465334|ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
gi|449506617|ref|XP_004162799.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 633
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/423 (53%), Positives = 296/423 (69%)
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
E+ L+ GFEI+++M + + NEAT TSVAR+A++ D + AFD+VKQMK G+ P
Sbjct: 197 EDFKKYALETGFEIYEKMCAENIPMNEATLTSVARMAMSMGDGDKAFDMVKQMKPLGLNP 256
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+LRSYGPAL FCK G +KA+ V+ HM E GV PEEPEL+ALL++S++A +KVY +L
Sbjct: 257 RLRSYGPALSTFCKNGKLEKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAEKVYYLL 316
Query: 284 HRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSG 343
H+LRT VRQV ST +I WF S DAA +G + D +++ I GGGGWHG GWLG G
Sbjct: 317 HKLRTSVRQVLPSTADLIITWFKSKDAARVGKVKLDRKIIKKAIGNGGGGWHGLGWLGRG 376
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLG 403
KW V T + ++G+C SC E+L ID+DP ETENFA S++ + QRE S F KFQ+WL
Sbjct: 377 KWSVSSTNVGKDGLCKSCGEKLATIDLDPIETENFAESVAAIVTQREKNSSFQKFQKWLE 436
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
+GPF+AVID ANVGL +Q F+ ++N + N +RQ PSK+ PL+ILH R++G +
Sbjct: 437 YYGPFEAVIDAANVGLFSQRKFAPSKVNLIANGIRQKLPSKKWPLIILHNRRITGRKMEE 496
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFP 523
P NK L++ W++ ALY TP GSNDDWYWLYA + K L+VTNDEMRDH FQLLG FFP
Sbjct: 497 PVNKTLIEKWKNADALYATPTGSNDDWYWLYAAIKFKCLIVTNDEMRDHTFQLLGNDFFP 556
Query: 524 RWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRAR 583
RWKE+HQ+ S S G MPPP S+VIQESENG WHVP+ + E R+WLC TR
Sbjct: 557 RWKERHQVHFSFSATGPVFHMPPPCSVVIQESENGHWHVPLASEHSYEEDRKWLCITRGN 616
Query: 584 VKS 586
++S
Sbjct: 617 LQS 619
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 97 KARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS 150
K E+P R LDMCSK GD A++LY+ A+ GI L Q+HY V+LY+CS
Sbjct: 44 KGNNETP---FRANLDMCSKTGDFIGAIKLYEWAQKEGINLEQYHYAVILYLCS 94
>gi|186512202|ref|NP_193921.2| proteinaceous RNase P 3 [Arabidopsis thaliana]
gi|426020118|sp|F4JKB6.1|PRRP3_ARATH RecName: Full=Proteinaceous RNase P 3
gi|332659121|gb|AEE84521.1| proteinaceous RNase P 3 [Arabidopsis thaliana]
Length = 576
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/494 (46%), Positives = 313/494 (63%), Gaps = 25/494 (5%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
E L L CSKR D+ AL LYD A S+ I L+Q H+ LLY+CS S +
Sbjct: 89 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQT-- 146
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-- 220
+ + RGF+IF +M++ + PNE++ T+VARLA AK D + AF LVK + + G
Sbjct: 147 ------VAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGV 200
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
P+LR+Y PAL FC +K YEV+ HM SG+V EE E+SALLK+S + +KVY
Sbjct: 201 SVPRLRTYAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVY 260
Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREGIVRGGGGWHGQG 338
L +LR V VSE T K IE+WF V A+E+ + D+ +R +++ GGGWHG G
Sbjct: 261 RYLQKLRECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLG 320
Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR------ 392
W+G GKW V++ + G C SC+E L C+D + ETE+F +SL LA +R+ +
Sbjct: 321 WVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEP 380
Query: 393 -SDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMP 447
+DF++FQEWL +HG ++A++DGAN+GL Q+ FS QL VV L S SK+ P
Sbjct: 381 MADFSEFQEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQP 440
Query: 448 LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTND 507
L++LHK RV+ + P ++ L++ W + LY TPPGSNDDWYWLYA K LLVTND
Sbjct: 441 LILLHKKRVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTND 499
Query: 508 EMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITG 567
EMRDH+F+LL SFF +WKE+HQ+R + + L L MPPP+S+VIQESE GSWHVP+ +
Sbjct: 500 EMRDHIFELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITSQ 559
Query: 568 DDLEAPRQWLCATR 581
D E+ R W+C TR
Sbjct: 560 DKEESLRSWMCITR 573
>gi|110741661|dbj|BAE98777.1| hypothetical protein [Arabidopsis thaliana]
Length = 517
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/494 (46%), Positives = 313/494 (63%), Gaps = 25/494 (5%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
E L L CSKR D+ AL LYD A S+ I L+Q H+ LLY+CS S +
Sbjct: 30 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQT-- 87
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-- 220
+ + RGF+IF +M++ + PNE++ T+VARLA AK D + AF LVK + + G
Sbjct: 88 ------VAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGV 141
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
P+LR+Y PAL FC +K YEV+ HM SG+V EE E+SALLK+S + +KVY
Sbjct: 142 SVPRLRTYAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVY 201
Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREGIVRGGGGWHGQG 338
L +LR V VSE T K IE+WF V A+E+ + D+ +R +++ GGGWHG G
Sbjct: 202 RYLQKLRECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLG 261
Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR------ 392
W+G GKW V++ + G C SC+E L C+D + ETE+F +SL LA +R+ +
Sbjct: 262 WVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEP 321
Query: 393 -SDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMP 447
+DF++FQEWL +HG ++A++DGAN+GL Q+ FS QL VV L S SK+ P
Sbjct: 322 MADFSEFQEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQP 381
Query: 448 LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTND 507
L++LHK RV+ + P ++ L++ W + LY TPPGSNDDWYWLYA K LLVTND
Sbjct: 382 LILLHKKRVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTND 440
Query: 508 EMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITG 567
EMRDH+F+LL SFF +WKE+HQ+R + + L L MPPP+S+VIQESE GSWHVP+ +
Sbjct: 441 EMRDHIFELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITSQ 500
Query: 568 DDLEAPRQWLCATR 581
D E+ R W+C TR
Sbjct: 501 DKEESLRSWMCITR 514
>gi|224132016|ref|XP_002328164.1| predicted protein [Populus trichocarpa]
gi|222837679|gb|EEE76044.1| predicted protein [Populus trichocarpa]
Length = 557
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 234/496 (47%), Positives = 322/496 (64%), Gaps = 20/496 (4%)
Query: 91 SNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS 150
+NK K K+ ++PE + L+ SK D+ A+ LYD A S L+QH++N LLY+CS
Sbjct: 5 ANKKKPKSN-QTPESQFSYNLNFYSKSKDLHSAISLYDTAISQNTRLNQHNFNTLLYLCS 63
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
S+++ L L+ GF +F M+++ + PNEA+ T+VARLA AK D + AF
Sbjct: 64 ISLNDPSTKD--------LSLQYGFRVFDHMVSNGIKPNEASITAVARLAAAKGDGDYAF 115
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
DLVK + + P+LR+Y PALF +C+ DKAYEV+ HM GV EE E++ALLK+S
Sbjct: 116 DLVKNIGVYNELPRLRTYDPALFCYCEKLEGDKAYEVEEHMRRIGVGLEEGEIAALLKVS 175
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
V+ ++ ++VY L +LR +VR V E T K+IE WF+ + + + DV VRE + R
Sbjct: 176 VETRREERVYGYLQKLRKMVRCVREETAKVIEHWFEVFEGNGVEL---DVGLVREAVSRN 232
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQRE 390
GGGWHG GW+G KW V R +D G CC C +LV +DID ETE FA S++ LA +RE
Sbjct: 233 GGGWHGLGWIGKEKWVVRRGSVDAGGKCCCCGGQLVSVDIDDDETERFAESVAGLAMERE 292
Query: 391 VRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSF-YQLNTVVNRLRQMSPSKR 445
V+++F++FQ WL +H ++A++DGAN+GL Q+ FS QL+ V+ L S KR
Sbjct: 293 VKANFSEFQNWLEKHANYEAIMDGANIGLYQQNFAEGGFSISQQLDAVIKDLYNQSGKKR 352
Query: 446 MPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVT 505
PL+ILH R+ Q P ++L+ W + LYTTP GSNDDWYWLYA V + LVT
Sbjct: 353 -PLIILHNKRLRA-LLQNPSTRELIQEWIEKDVLYTTPHGSNDDWYWLYAAVKLRCWLVT 410
Query: 506 NDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVI 565
NDEMRDH+F+LLG+ FF +WKE+HQ+R + + L L MPP +SIVIQESENGSWHVPV
Sbjct: 411 NDEMRDHIFELLGSDFFVKWKERHQVRYTFVKGNLELQMPPLFSIVIQESENGSWHVPV- 469
Query: 566 TGDDLEAPRQWLCATR 581
GD ++P+ WLC +R
Sbjct: 470 AGDGNDSPQSWLCVSR 485
>gi|302759989|ref|XP_002963417.1| hypothetical protein SELMODRAFT_80247 [Selaginella moellendorffii]
gi|300168685|gb|EFJ35288.1| hypothetical protein SELMODRAFT_80247 [Selaginella moellendorffii]
Length = 536
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 241/481 (50%), Positives = 309/481 (64%), Gaps = 18/481 (3%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
+R LD CSK GDV AL Y R + ++YNVLLY+CS E +
Sbjct: 67 VRFTLDTCSKFGDVNGALSAYSSNR-EAVKFDLYNYNVLLYLCSSAALGEMMDGF----- 120
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
L++G EIF+QM + V PNEATFT++ARL+VAK D ++AF++VK M + IPPKLR
Sbjct: 121 ----LRKGLEIFEQMQAENVAPNEATFTALARLSVAKRDGDLAFEIVKAMIAAKIPPKLR 176
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
YGPAL+ + K + +KA+EV HM GV PEE EL LL LS A D+VY +LH L
Sbjct: 177 CYGPALYVYFKRNDPEKAFEVYNHMLVHGVQPEEAELEVLLHLSSKACLGDRVYLLLHHL 236
Query: 287 RTLVRQVSESTFKIIEDWFDSVDAAEI--GVLNWDVSKVREGIVRGGGGWHGQGWLGSGK 344
R VR VS+ST +IE WF S A + L D VR + GGGWHG GWLG G+
Sbjct: 237 RETVRDVSQSTVSVIERWFKSDFAGRVTGNSLPGDFD-VRCSSLAKGGGWHGLGWLGQGR 295
Query: 345 WRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGR 404
W V T + GVCC CNE++V IDI P +T+ FA +++LA +RE + F F++WL R
Sbjct: 296 WNVGYTSLTAEGVCCRCNEQMVTIDITPEDTDVFAKCIASLAFKRESNNSFGIFKDWLDR 355
Query: 405 HGPFDAVIDGANVGLVNQH---NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPA 461
+GPF+ V+DGANVG NQ +F QL TVV +++ S + PL++LH GR G
Sbjct: 356 NGPFETVVDGANVGFYNQRFNGELNFAQLETVVADVQRRS--GKWPLIVLHVGRTMKGSG 413
Query: 462 QIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSF 521
+ ++LL W + ALY P GSNDDWYWLYA V CKSLLV+NDEMRDH+FQLLG F
Sbjct: 414 RSSYAQQLLRHWSNAKALYIAPAGSNDDWYWLYAAVKCKSLLVSNDEMRDHIFQLLGREF 473
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
FP WKE+HQ+R V++ G MPPPYSI+IQE+E GSWH+PV GDD+ +PR+WLC TR
Sbjct: 474 FPTWKERHQVRFHVTKHGPVFHMPPPYSIIIQETERGSWHIPVSGGDDISSPRKWLCVTR 533
Query: 582 A 582
Sbjct: 534 G 534
>gi|449531908|ref|XP_004172927.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 461
Score = 440 bits (1132), Expect = e-120, Method: Compositional matrix adjust.
Identities = 240/415 (57%), Positives = 296/415 (71%), Gaps = 21/415 (5%)
Query: 7 LTPSLIRTSPFLTFLSKISL-----PLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR-F 60
L S +TSPF + +KI + PL ++ RS++ F+K I N F
Sbjct: 8 LMSSFAKTSPFFLYFTKIPVFPCQNPLRASLRTYSCRSIV------FSKNILKYSCNSYF 61
Query: 61 SADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDV 120
S LC +A + S+VN SS ++ +S+K +KKA +E+PE VL++ LDMCSK G V
Sbjct: 62 SIHTVRYLCNVASAATSSVNASSTSSSNKVSHKLRKKALKEAPESVLKYNLDMCSKYGQV 121
Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
+AL LYD+ARSNGI L+QHHYNVLLY+CS E+S N S++ L RGFEIFQQ
Sbjct: 122 VKALELYDEARSNGIQLNQHHYNVLLYLCSSPSLLETS---GANNLSSVVLSRGFEIFQQ 178
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+TDKV PNEATFTS+AR+A A++DPEMAF LVKQMK + I P+LRSYGPALFGFC+
Sbjct: 179 MMTDKVSPNEATFTSLARIAAARDDPEMAFSLVKQMKDYHIAPRLRSYGPALFGFCRKLM 238
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
+AYEVD+HM S V PEE ELSALLKLS D KK DKVYE+LHRLR VRQVSE T K+
Sbjct: 239 PKEAYEVDSHMLASAVEPEELELSALLKLSSDVKKADKVYELLHRLRRTVRQVSEPTAKV 298
Query: 301 IEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCS 360
IEDWF+S A+E+G +WDV KVRE IVR GGGWHG+GWLGSGKW++ RT ID+NGVC S
Sbjct: 299 IEDWFNSESASEVGKKHWDVDKVRECIVRRGGGWHGEGWLGSGKWKLVRTGIDDNGVCHS 358
Query: 361 CNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWL--GRHGP---FDA 410
C ++LVCIDIDP+ETE+FASSL+ LA QR V++DFN FQ + G GP FDA
Sbjct: 359 CAQKLVCIDIDPKETEDFASSLTKLANQR-VKADFNNFQLAVFGGLIGPGLDFDA 412
>gi|79557286|ref|NP_179256.3| proteinaceous RNase P 2 [Arabidopsis thaliana]
gi|75116712|sp|Q680B9.1|PRRP2_ARATH RecName: Full=Proteinaceous RNase P 2
gi|51970038|dbj|BAD43711.1| unnamed protein product [Arabidopsis thaliana]
gi|330251428|gb|AEC06522.1| proteinaceous RNase P 2 [Arabidopsis thaliana]
Length = 528
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/509 (45%), Positives = 321/509 (63%), Gaps = 27/509 (5%)
Query: 92 NKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCS 150
NK KK +R +PE L L+ CSK D+ AL LYD A S+ + LSQ H+ LLY+CS
Sbjct: 20 NKKKKVSR--NPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCS 77
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
S + L + RGFEIF +M++ + PNEA+ TSVARLA AK + + AF
Sbjct: 78 ASITDISLQY--------LAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAF 129
Query: 211 DLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+VK+ S G P+LR+Y PAL FC+ +K YEV+ HM +G+ EE E+SALLK
Sbjct: 130 KVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLK 189
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREG 326
+S + +KVY LH+LR V VSE T KIIE+WF A E+G + DV +RE
Sbjct: 190 VSAATGRENKVYRYLHKLREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREA 249
Query: 327 IVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLA 386
++ GGGWHG GW+G GKW V++ + G C SC+E+L C+D + ET+ F SL LA
Sbjct: 250 VLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALA 309
Query: 387 CQREVRSD-------FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVN 435
R+ + + F++FQ+WL +HG ++A++DGAN+GL Q+ +FS QL +V+
Sbjct: 310 MDRKTKMNSCETNVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMK 369
Query: 436 RLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYA 495
L + S + + PL++LHK RV + P ++ L++ W G LY TPPGSNDDWYWLYA
Sbjct: 370 ELYRESGNNKWPLILLHKRRVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYA 428
Query: 496 TVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQES 555
K LLVTNDEMRDH+F+LLG++FF +WKE+HQ+R + + L L MP P+S+VIQES
Sbjct: 429 AAKLKCLLVTNDEMRDHIFELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQES 488
Query: 556 ENGSWHVPVITGDDLEAPRQWLCATRARV 584
E GSWH PV ++ E+ R W+C +R +
Sbjct: 489 EKGSWHFPVSCENNEESSRTWMCISRQSI 517
>gi|297836360|ref|XP_002886062.1| hypothetical protein ARALYDRAFT_899980 [Arabidopsis lyrata subsp.
lyrata]
gi|297331902|gb|EFH62321.1| hypothetical protein ARALYDRAFT_899980 [Arabidopsis lyrata subsp.
lyrata]
Length = 531
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 235/510 (46%), Positives = 318/510 (62%), Gaps = 28/510 (5%)
Query: 92 NKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCS 150
NK KK +R SPE L L+ CSK D+ AL LYD A S+ + LSQ H+ L+Y+CS
Sbjct: 20 NKKKKISR--SPETNLLFNLNSCSKSKDLSAALALYDAAVTSSELRLSQQHFQTLVYLCS 77
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
S + L + RGFEIF +M++ + PNEA+ TSVARLA AK D + AF
Sbjct: 78 ASISDTSLRS--------LAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGDGDYAF 129
Query: 211 DLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+VK S G P+LR+Y PAL FC+ + D YEV+ HM +G+ EE E+ ALLK
Sbjct: 130 KVVKDFVSVGGVSIPRLRTYAPALLCFCERLDADMGYEVEEHMEAAGIALEEAEILALLK 189
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREG 326
+S + +KVY LH+LR V V E T KIIE+WF A E+ + DV +RE
Sbjct: 190 VSAATGRENKVYRYLHKLREYVGCVCEETSKIIEEWFCGEKAGEVSDNGIGSDVGMLREA 249
Query: 327 IVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLA 386
+++ GGGWHG GW+G GKW V++ + G C SC E+L C+D + ET+ F SL LA
Sbjct: 250 VLKNGGGWHGHGWVGEGKWTVKKGNVSSTGRCLSCREQLACVDTNEVETQKFVDSLVALA 309
Query: 387 CQR-------EVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSF-YQLNTVV 434
+R E + DF++FQ+WL +HG ++A++DGAN+GL Q+ +FS QL +VV
Sbjct: 310 MERKAKMNSCETQVDFSEFQDWLEKHGNYEAIVDGANIGLYQQNFVDGSFSLPQQLESVV 369
Query: 435 NRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLY 494
L + S + + PL++LHK RV + P ++ L++ W G LY TPPGSNDDWYWLY
Sbjct: 370 KELYRESGNNKWPLILLHKRRVRA-LLENPTHRNLVEEWISNGVLYPTPPGSNDDWYWLY 428
Query: 495 ATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQE 554
A K LLVTNDEMRDH+F+LLG+SFF +WKE+HQ+R + + L L MP P+S+VIQE
Sbjct: 429 AAAKLKCLLVTNDEMRDHIFELLGSSFFHKWKERHQVRYTFVKGNLKLEMPSPFSVVIQE 488
Query: 555 SENGSWHVPVITGDDLEAPRQWLCATRARV 584
SE GSWH PV ++ E+ R W+C +R V
Sbjct: 489 SEKGSWHFPVSCENNEESSRTWMCISRQSV 518
>gi|115442469|ref|NP_001045514.1| Os01g0968000 [Oryza sativa Japonica Group]
gi|57899860|dbj|BAD87696.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113535045|dbj|BAF07428.1| Os01g0968000 [Oryza sativa Japonica Group]
Length = 548
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/494 (44%), Positives = 299/494 (60%), Gaps = 27/494 (5%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARS--NGITLSQHHYNVLLYVCSCKCGSESS 158
+ P L L C++RGD A+ +D A S + L H YN L ++ + +
Sbjct: 20 KGPNSDLSRTLTDCTRRGDAAAAMAAFDSALSGPDAPRLLAHQYNQLFHLLA-------T 72
Query: 159 ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED----PEMAFDLVK 214
+ D ++ +R +F M+ P+EAT TS+AR+ + + AFDLV
Sbjct: 73 ADADSLPNAAAAARR---VFSHMLGSGASPSEATITSLARVTASDASNPAAADEAFDLVA 129
Query: 215 QMKS-FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
M+ +G+ P+LRSY P L F + G KAY VDAHM S V PEEPE++ALL +S A
Sbjct: 130 TMRDKYGVAPRLRSYSPVLAAFRRAGEAGKAYAVDAHMEASAVAPEEPEIAALLDVSAKA 189
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGG 333
DKVYE +H+L V V E T +++E WF S AA G WD KV++ IV GGG
Sbjct: 190 GDADKVYEYMHKLSRTVDCVGEETAEVLEGWFRSGKAAMAGKAEWDACKVKDAIVANGGG 249
Query: 334 WHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRS 393
H GWLG+G W V+R ++ +G C C RL C+DID ET+ FA S+++LA QRE +
Sbjct: 250 CHRLGWLGTGPWTVQRVRVGGDGQCEGCGCRLACVDIDVEETQRFADSVASLALQRETKI 309
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLV 449
+F++FQEWL HG ++A++DGAN+ L Q+ FS QL+ VV LR K PLV
Sbjct: 310 NFSQFQEWLEEHGAYEAIVDGANIALYQQNFAEGGFSLTQLDAVVTELRDRYNGK-WPLV 368
Query: 450 ILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEM 509
+LH R++ + N+ L++ WR GALYT+P GSNDDWYWLYA + LLVTNDEM
Sbjct: 369 VLHNKRIA-KLMENASNRHLIETWRANGALYTSPIGSNDDWYWLYAAIRLNCLLVTNDEM 427
Query: 510 RDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPV--ITG 567
RDH+F+LLG+SFFP+WK++HQ++ + S+ L+MPPPYS IQESE GSWHVP+ +G
Sbjct: 428 RDHIFELLGSSFFPKWKQRHQVKYTFSKGKAVLMMPPPYSSEIQESEMGSWHVPMEEKSG 487
Query: 568 DDLEAPRQWLCATR 581
DD R WLC R
Sbjct: 488 DDR--ARIWLCIDR 499
>gi|147844817|emb|CAN79022.1| hypothetical protein VITISV_022893 [Vitis vinifera]
Length = 509
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/470 (46%), Positives = 286/470 (60%), Gaps = 52/470 (11%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR 163
EG R LD CSKR D+ A+ L++ A S L +H+N LLY+C+ SS+
Sbjct: 12 EGKFRFDLDTCSKRRDLSGAVALFESAVSQNFRLIHYHFNALLYLCTISIDEPSSKA--- 68
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
L L GF IF M+ V PNEAT T+VARLA AK D ++AF++V+ M + + P
Sbjct: 69 -----LALDYGFRIFDHMVNSGVTPNEATITAVARLAAAKSDGDLAFEVVRTMGKYELSP 123
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+LR+YGPAL+ FC +KA+ V+ HM GV PEEPEL+ALLK+S + + DKVY L
Sbjct: 124 RLRTYGPALYWFCANLEGEKAWAVEEHMVSMGVHPEEPELAALLKVSAEMGRGDKVYAYL 183
Query: 284 HRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSG 343
H+LRT VR VSEST +IIE WF A+E+G ++ + + E ++ GGGWHGQGW+G G
Sbjct: 184 HKLRTAVRSVSESTAEIIEGWFCGEAASEVGGVDCCLGAIEEVALKNGGGWHGQGWIGKG 243
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLG 403
KW V R ++D +G CSC E+L +DID ETE F S++ +A +REVRS+F +FQ+WL
Sbjct: 244 KWLVCRAKVDSSGR-CSCREQLATVDIDRAETETFLESVAAMAMEREVRSNFREFQDWLD 302
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGR-------V 456
+H ++A++DGAN+GL Q NF+ QL+ VV L S KR PLVILH R
Sbjct: 303 KHADYEAIVDGANIGLY-QQNFANEQLDAVVKELYDRSQKKR-PLVILHNKRFRKLSENA 360
Query: 457 SGGPAQIP----------------------------------KNKKLLDIWRDGGALYTT 482
S +P N+KLL W G LYTT
Sbjct: 361 SNRKRILPTLDAVVKELYDRSQKKRPLVILHNKRFRKLSENASNRKLLQEWLTQGVLYTT 420
Query: 483 PPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIR 532
P GSNDDWYWLYA V K LLVTNDEMRDH+F+LLG+SFF +WKE+HQ++
Sbjct: 421 PNGSNDDWYWLYAAVKLKCLLVTNDEMRDHIFELLGSSFFLKWKERHQVQ 470
>gi|302776824|ref|XP_002971555.1| hypothetical protein SELMODRAFT_147976 [Selaginella moellendorffii]
gi|300160687|gb|EFJ27304.1| hypothetical protein SELMODRAFT_147976 [Selaginella moellendorffii]
Length = 421
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/417 (52%), Positives = 280/417 (67%), Gaps = 8/417 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++G EIF+QM + V PNEATFT++ARL+VAK D ++AF++VK M + IPPKLR YGP
Sbjct: 6 LRKGLEIFEQMQAENVAPNEATFTALARLSVAKRDGDLAFEIVKAMIAAKIPPKLRCYGP 65
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
AL+ + K + +KA+EV HM GV PEE EL LL LS A D+VY +LH LR V
Sbjct: 66 ALYVYFKRNDAEKAFEVYNHMLVHGVQPEEAELEVLLHLSSKACLGDRVYLLLHHLRETV 125
Query: 291 RQVSESTFKIIEDWFDSVDAAEI--GVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVE 348
R VS+ST +IE WF S A + L D VR + GGGWHG GWLG G W V
Sbjct: 126 RDVSQSTVSVIERWFKSDFAGRVTGNSLPGDFD-VRCSSLAKGGGWHGLGWLGQGIWNVG 184
Query: 349 RTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPF 408
T + GVCC CNE++V IDI P +T+ FA +++LA +RE + F F++WL R+GPF
Sbjct: 185 YTSLTAEGVCCRCNEQMVTIDITPEDTDVFAKCIASLAFKRESNNSFGIFKDWLDRNGPF 244
Query: 409 DAVIDGANVGLVNQH---NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPK 465
+ V+DGANVG NQ +F QL TVV +++ S + PL++LH GR G +
Sbjct: 245 ETVVDGANVGFYNQRFNGELNFAQLETVVADVQRRS--GKWPLIVLHVGRTMKGSGRSSY 302
Query: 466 NKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRW 525
++LL W + ALY P GSNDDWYWLYA V CKSLLV+NDEMRDH+FQLLG FFP W
Sbjct: 303 AQQLLRHWSNAKALYIAPAGSNDDWYWLYAAVKCKSLLVSNDEMRDHIFQLLGREFFPTW 362
Query: 526 KEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRA 582
KE+HQ+R V++ G MPPPYSI+IQE+E GSWH+PV GDD+ +PR+WLC TR
Sbjct: 363 KERHQVRFHVTKHGPVFHMPPPYSIIIQETERGSWHIPVSGGDDISSPRKWLCVTRG 419
>gi|194698092|gb|ACF83130.1| unknown [Zea mays]
Length = 521
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/454 (45%), Positives = 280/454 (61%), Gaps = 22/454 (4%)
Query: 137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV 196
LS H YN LL++ + DR + + +F M+ P+EAT TS+
Sbjct: 32 LSAHQYNQLLHLLAAT---------DRSSFPSPPAAAARRVFAHMLQAAAPPSEATITSL 82
Query: 197 ARLAVAKEDP----EMAFDLVKQMK-SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251
AR+ A DP + AF+LV MK +G+ P+LRSYGP L F + G KAY V+AHM
Sbjct: 83 ARVIAA--DPASAADEAFELVATMKDKYGLSPRLRSYGPVLAAFRRAGEAAKAYAVEAHM 140
Query: 252 GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAA 311
SGV PEEPEL+ALL +S A DKVYE +H+LR V VSE T ++E WF S +AA
Sbjct: 141 TASGVSPEEPELAALLDVSSRAGDADKVYEYMHKLRQAVHCVSEETAGVVEAWFRSDEAA 200
Query: 312 EIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDID 371
G WD ++V++ IV GGG H GWLG+G W V+R ++ + C C L CIDID
Sbjct: 201 TAGKPQWDAAQVKDAIVANGGGCHRLGWLGTGPWTVQRVRVGDADQCGGCRFHLACIDID 260
Query: 372 PRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSF 427
ET+ FA S++ LA +RE +++F++FQEWL + + A++DGAN+ L Q+ FS
Sbjct: 261 MEETQRFADSVAGLALERETKTNFSRFQEWLEANKDYQAIVDGANIALYQQNFAEGGFSL 320
Query: 428 YQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSN 487
QL+ V+ LR K PLVILH R+S + N+ L++ WR GALYT+P GSN
Sbjct: 321 TQLDGVITELRDRYHGK-WPLVILHNKRIS-KLMENSSNRHLIETWRTNGALYTSPSGSN 378
Query: 488 DDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPP 547
DDWYWLYA + LLVTNDEMRDH+F+LLG SFFP+WK++H+++ + ++ L+MPPP
Sbjct: 379 DDWYWLYAAIKLNCLLVTNDEMRDHIFELLGPSFFPKWKQRHRVKYTFNKGKAVLVMPPP 438
Query: 548 YSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
YS +QESE GSWH+P+ E R WLC R
Sbjct: 439 YSSELQESEMGSWHIPIEEKSGNERGRIWLCIGR 472
>gi|226491748|ref|NP_001150343.1| antiporter/ drug transporter/ transporter [Zea mays]
gi|195638562|gb|ACG38749.1| antiporter/ drug transporter/ transporter [Zea mays]
Length = 545
Score = 407 bits (1045), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/454 (45%), Positives = 280/454 (61%), Gaps = 22/454 (4%)
Query: 137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV 196
LS H YN LL++ + DR + + +F M+ P+EAT TS+
Sbjct: 56 LSAHQYNQLLHLLAAT---------DRSSFPSPPAAAARRVFAHMLQAAAPPSEATITSL 106
Query: 197 ARLAVAKEDP----EMAFDLVKQMK-SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251
AR+ A DP + AF+LV MK +G+ P+LRSYGP L F + G KAY V+AHM
Sbjct: 107 ARVIAA--DPASAADEAFELVATMKDKYGLSPRLRSYGPVLAAFRRAGEAAKAYAVEAHM 164
Query: 252 GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAA 311
SGV PEEPEL+ALL +S A DKVYE +H+LR V VSE T ++E WF S +AA
Sbjct: 165 TASGVSPEEPELAALLDVSSRAGDADKVYEYMHKLRQAVHCVSEETAGVVEAWFRSDEAA 224
Query: 312 EIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDID 371
G WD ++V++ IV GGG H GWLG+G W V+R ++ + C C L CIDID
Sbjct: 225 TAGKPQWDAAQVKDAIVANGGGCHRLGWLGTGPWTVQRVRVGDADQCGGCRFHLACIDID 284
Query: 372 PRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSF 427
ET+ FA S++ LA +RE +++F++FQEWL + + A++DGAN+ L Q+ FS
Sbjct: 285 MEETQRFADSVAGLALERETKTNFSRFQEWLEANKDYQAIVDGANIALYQQNFAEGGFSL 344
Query: 428 YQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSN 487
QL+ V+ LR K PLVILH R+S + N+ L++ WR GALYT+P GSN
Sbjct: 345 TQLDGVITELRDRYHGK-WPLVILHNKRIS-KLMENSSNRHLIETWRTNGALYTSPSGSN 402
Query: 488 DDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPP 547
DDWYWLYA + LLVTNDEMRDH+F+LLG SFFP+WK++H+++ + ++ L+MPPP
Sbjct: 403 DDWYWLYAAIKLNCLLVTNDEMRDHIFELLGPSFFPKWKQRHRVKYTFNKGKTVLVMPPP 462
Query: 548 YSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
YS +QESE GSWH+P+ E R WLC R
Sbjct: 463 YSSELQESEMGSWHIPIEEKSGNERGRIWLCIGR 496
>gi|307135991|gb|ADN33849.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 302
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/304 (66%), Positives = 240/304 (78%), Gaps = 4/304 (1%)
Query: 96 KKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155
KK R++PE VLR+KLDMCSK G V +AL LYD+ARS+G+ L HHYNVLLY+CS
Sbjct: 2 KKDSRDAPENVLRYKLDMCSKYGQVVKALELYDEARSDGVQLILHHYNVLLYLCSSPSLL 61
Query: 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
E+S N ++ L RG EI+QQMITDKV PNEATFTS+AR+A A +DPEMAF LVKQ
Sbjct: 62 ETS---GANNLLSVVLSRGLEIYQQMITDKVSPNEATFTSLARIAGAMDDPEMAFSLVKQ 118
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M+ + I P+LRSYGPALFGFC+ + AYEVD+HM S V PEEPELSALLKLS D K+
Sbjct: 119 MEDYHIAPRLRSYGPALFGFCRKLMPEGAYEVDSHMLASAVEPEEPELSALLKLSSDVKR 178
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWH 335
DKVYE+LHRLR VRQVSE T K+IEDWF+S A+E+G +WDV KVREGIVR GGGWH
Sbjct: 179 ADKVYELLHRLRRTVRQVSEPTAKVIEDWFNSESASEVGKKHWDVDKVREGIVRRGGGWH 238
Query: 336 GQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDF 395
G+GWLGSGKWR+ RT ID+NGVC SC ++LVCIDIDP+ETE+FASSL+ LA QR V+ +F
Sbjct: 239 GEGWLGSGKWRLVRTGIDDNGVCHSCAQKLVCIDIDPKETEDFASSLTKLANQR-VKDNF 297
Query: 396 NKFQ 399
KF+
Sbjct: 298 GKFR 301
>gi|242046020|ref|XP_002460881.1| hypothetical protein SORBIDRAFT_02g036790 [Sorghum bicolor]
gi|241924258|gb|EER97402.1| hypothetical protein SORBIDRAFT_02g036790 [Sorghum bicolor]
Length = 526
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/456 (44%), Positives = 280/456 (61%), Gaps = 21/456 (4%)
Query: 137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV 196
L+ H YN LL++ + S++ + R +F M+ P+EAT TS+
Sbjct: 32 LAAHQYNQLLHLLA------SADRSSFPGPAAAAAAR--RVFAHMLQAGAPPSEATITSL 83
Query: 197 ARLAVAKEDP-----EMAFDLVKQMK-SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250
AR+ A +DP + AF+LV MK +G+ P+LRSYGP L F G KAY V+AH
Sbjct: 84 ARVIAAADDPGSSAADEAFELVATMKDKYGLSPRLRSYGPVLAAFRSAGEAAKAYAVEAH 143
Query: 251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
M SGV PEEPEL+ALL +S A DKVYE +H+LR V VSE T ++E WF S A
Sbjct: 144 MTASGVSPEEPELAALLDVSSRAGDADKVYEYMHKLRQAVDCVSEETAGVVEAWFRSDKA 203
Query: 311 AEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDI 370
A G W+ ++V++ IV GGG H GWLG+G W ++R ++ + C C RL CIDI
Sbjct: 204 AMAGKSEWNAAQVKDAIVANGGGCHRLGWLGTGPWTMQRVRVGADDQCAGCRYRLACIDI 263
Query: 371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFS 426
D ET FA S++ LA +RE +++F++FQEWL + + A++DGAN+ L Q+ FS
Sbjct: 264 DMEETRKFADSVAGLALERETKTNFSRFQEWLEANKEYQAIVDGANIALYQQNFAEGGFS 323
Query: 427 F-YQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPG 485
QL+ V+ LR K PLVILH R++ + N+ L++ WR GALYT+P G
Sbjct: 324 LTQQLDAVITELRDRYHGK-WPLVILHNKRIA-KLMENSSNRHLIETWRTNGALYTSPSG 381
Query: 486 SNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMP 545
SNDDWYWLYA + LLVTNDEMRDH+F+LLG+SFFP+WK++H+++ + ++ L+MP
Sbjct: 382 SNDDWYWLYAAIKLNCLLVTNDEMRDHIFELLGSSFFPKWKQRHRVKYTFNKGKAVLVMP 441
Query: 546 PPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
P YS IQESE GSWH+P+ E R WLC R
Sbjct: 442 PSYSSEIQESEMGSWHIPMEEKSGDERGRIWLCIGR 477
>gi|147855560|emb|CAN79167.1| hypothetical protein VITISV_031236 [Vitis vinifera]
Length = 696
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/387 (56%), Positives = 259/387 (66%), Gaps = 34/387 (8%)
Query: 11 LIRTSPFLTFLSKISLPLMHQSNCHTYRSLL--CWHMHSFTKPITDIKQNRFSADLTTGL 68
L R F +K P++ R LL C H H + ++R + +
Sbjct: 319 LTRAGGLSFFFAKA--PILCHVGHTRLRPLLYGCSHHHFKPTTYSPYIKDRIFTNKSAHF 376
Query: 69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYD 128
+A S + S+ TMSNK++KKARRESPEGVLR K DMCSK GDV EAL LYD
Sbjct: 377 LNVALSATNKYIPESSAAAKTMSNKTRKKARRESPEGVLRFKTDMCSKHGDVVEALHLYD 436
Query: 129 DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP 188
+ARS G+ LSQH+YNVLLY+CSC S NGD EN NL LKRGFEIF+QM D ++P
Sbjct: 437 EARSRGVPLSQHNYNVLLYLCSC-----SGSNGD-ENVVNLALKRGFEIFKQMGVDGIEP 490
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
NEATFTS RLA A EDPEMAF+LVKQMKS GIPPKLRSYGP LF FCK G+ D+AYEVD
Sbjct: 491 NEATFTSATRLACAMEDPEMAFNLVKQMKSCGIPPKLRSYGPPLFRFCKKGDADRAYEVD 550
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
AHM ESGVV EEPEL ALL LSV+++ VD+V+E++H LR VRQVSEST +++E WF+S
Sbjct: 551 AHMVESGVVAEEPELCALLGLSVESRWVDQVHEMMHHLRASVRQVSESTAEVVERWFNSE 610
Query: 309 DAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCI 368
DAA +G NWDV KV +G T++DE GVC SC E+LV I
Sbjct: 611 DAARVGEENWDVGKV----------------VG--------TEMDEAGVCQSCGEKLVGI 646
Query: 369 DIDPRETENFASSLSNLACQREVRSDF 395
DIDPRETENFASSL+ LACQREV++DF
Sbjct: 647 DIDPRETENFASSLTKLACQREVKADF 673
>gi|38567837|emb|CAE05786.2| OSJNBb0020J19.15 [Oryza sativa Japonica Group]
Length = 344
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/319 (59%), Positives = 250/319 (78%), Gaps = 6/319 (1%)
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M + G P LRSYGPALF +C G+ D A EV+AHM SGVVPEE EL+ALL+++ +
Sbjct: 1 MATAGTAPHLRSYGPALFAYCDAGDADGATEVEAHMDASGVVPEEAELAALLRVNSARGR 60
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWH 335
D+VY +LHR R L+RQV+++T +++E WF S A+E G+ +WD +KV++G+ GGGGWH
Sbjct: 61 PDQVYRLLHRARVLLRQVADATAQLLESWFASHAASEAGLDHWDATKVKQGLRNGGGGWH 120
Query: 336 GQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDF 395
GQGWLG G+W V RT +D++G C C E+LVCIDIDP ET +FA S++ +A R+ ++F
Sbjct: 121 GQGWLGKGQWTVARTDMDKDGTCHRCGEKLVCIDIDPSETHSFAESVAQIAINRD--ANF 178
Query: 396 NKFQ----EWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVIL 451
KFQ +WL HGPFDAVID ANVGL N+++FSFY++N VVN +++++ SK++PL+IL
Sbjct: 179 VKFQIYCIKWLECHGPFDAVIDAANVGLYNRNSFSFYEVNRVVNGIQRITKSKKLPLIIL 238
Query: 452 HKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRD 511
HK RV+GGPA++P+N+KLL+ W+ GALY TPPGSNDDWYWLYA V +SLLVTNDEMRD
Sbjct: 239 HKNRVNGGPAKLPQNQKLLESWQRAGALYATPPGSNDDWYWLYAAVIYRSLLVTNDEMRD 298
Query: 512 HLFQLLGTSFFPRWKEKHQ 530
HLFQLLGTSFFPRWKE HQ
Sbjct: 299 HLFQLLGTSFFPRWKENHQ 317
>gi|242064790|ref|XP_002453684.1| hypothetical protein SORBIDRAFT_04g010320 [Sorghum bicolor]
gi|241933515|gb|EES06660.1| hypothetical protein SORBIDRAFT_04g010320 [Sorghum bicolor]
Length = 632
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/464 (43%), Positives = 274/464 (59%), Gaps = 65/464 (14%)
Query: 92 NKSKKKARRESPE--GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--- 146
N SKK R + E G LR +LDMCSKRGDV A+ LYD A G+ L QHHYNVLL
Sbjct: 169 NASKKMKRSKGGEYAGKLRVELDMCSKRGDVMGAIALYDSAVEEGVRLGQHHYNVLLYLC 228
Query: 147 ------YVCSCKCGSESSE------------------NGDRENDSNLG------------ 170
+V K G+ SS G +D++ G
Sbjct: 229 SSASLGFVQPAKSGNTSSGIASFGPSQKLGPLPSGNLGGSEGDDASEGHVQDLGKNKASL 288
Query: 171 ----------------------LKRGFEIFQQMITDK--VDPNEATFTSVARLAVAKEDP 206
RGFEIF++M ++K V +EA T+ AR+A++ D
Sbjct: 289 LPGGSKAQTVSIPVGDDLREYACARGFEIFEKMCSEKERVQMSEAALTAKARMALSMGDS 348
Query: 207 EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266
+MAF++VKQMK G+ PKLRSYGPAL FC GN +KA+EV+AHM ESG+ PEE EL L
Sbjct: 349 DMAFEIVKQMKDLGLKPKLRSYGPALTAFCNGGNVEKAFEVEAHMLESGITPEEAELETL 408
Query: 267 LKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREG 326
L+ SV ++ DKVY ++H+ RT VRQVS ST ++ E WF S A+++G WD + +
Sbjct: 409 LRASVVGRRGDKVYYLMHKFRTTVRQVSPSTAELFEVWFRSPTASKVGKRKWDTGAIVKA 468
Query: 327 IVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLA 386
I GGGWHG GWLG GKW V R+ I++NGVC +C E+L ID+DP+ETE+FA+ ++ LA
Sbjct: 469 IENNGGGWHGFGWLGRGKWTVTRSNINKNGVCLACGEKLAIIDLDPKETEDFATFVAKLA 528
Query: 387 CQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRM 446
+RE S+F FQ+WL +HGPF+AV+D ANVGL + S ++N V + +R S++
Sbjct: 529 IKRERNSNFENFQKWLKKHGPFEAVVDAANVGLFGHRHLSLSKVNAVADAIRLRFTSRKW 588
Query: 447 PLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDW 490
PL++LH ++G + P N KL++ W+ ++Y TP GSNDDW
Sbjct: 589 PLIVLHNKHLTGEHMKKPGNHKLVEKWKQANSIYATPTGSNDDW 632
>gi|326517014|dbj|BAJ96499.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 544
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/498 (43%), Positives = 296/498 (59%), Gaps = 25/498 (5%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARS--NGITLSQHHYNVLLYVCSCKCGSESS 158
+ P L L C++RGD A+ +D A S + + L+ H YN LL++ +
Sbjct: 18 KGPNSDLSRTLTDCTRRGDAAAAMAAFDAAASGPDDLRLAAHQYNQLLHLLATAPFPGHP 77
Query: 159 ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA---FDLVKQ 215
R +F M+ P+EAT TS+AR+ A D E A F LV
Sbjct: 78 AAAARR------------VFAHMLGAGAAPSEATITSLARVVAADADAEGADEAFALVST 125
Query: 216 MK-SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
M+ +G+ P+LRSY P L F + G+ KAY V+AHM S V PEEPE++ALL++S A
Sbjct: 126 MRDKYGLAPRLRSYSPVLAAFRRAGDAGKAYAVEAHMAASAVSPEEPEVAALLEVSAKAG 185
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGW 334
DKVYE +H+LR V V+E T +++E WF S +AA G WD +V+E IV GGG
Sbjct: 186 DADKVYEYMHKLRRAVGCVTEETAEVLEGWFRSEEAAAAGKAEWDACRVKEAIVAKGGGC 245
Query: 335 HGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSD 394
H GWL +G W V+R ++ +G C C RL +DID +T FA S+S LA +RE +++
Sbjct: 246 HQLGWLRTGPWTVQRVRVAADGECGGCGCRLASVDIDMEDTHKFADSISGLALERETKAN 305
Query: 395 FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVI 450
F+ FQEWL H ++A++DGAN+ L Q+ FS QL+ VV LR K PLV+
Sbjct: 306 FSHFQEWLEEHKEYEAIVDGANIALYQQNFSEGGFSLVQLDAVVTELRDRYNGK-WPLVV 364
Query: 451 LHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMR 510
LH R++ + P N+ L++IWR GALYT+P GSNDDWYWLYA + LLVTNDEMR
Sbjct: 365 LHNKRIA-KLMETPSNRHLIEIWRANGALYTSPSGSNDDWYWLYAAIGLNCLLVTNDEMR 423
Query: 511 DHLFQLLG-TSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDD 569
DH+F+LLG +SFF +WK++H+++ + ++ L++PPPYS IQESE GSWHVP+
Sbjct: 424 DHIFELLGSSSFFYKWKQRHRVKYTFNKGKAVLVLPPPYSSEIQESETGSWHVPIEEKSG 483
Query: 570 LEAPRQWLCATRARVKSL 587
E R WLC R + L
Sbjct: 484 DERARTWLCIGRTDLTKL 501
>gi|326509963|dbj|BAJ87198.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 588
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 215/498 (43%), Positives = 296/498 (59%), Gaps = 25/498 (5%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARS--NGITLSQHHYNVLLYVCSCKCGSESS 158
+ P L L C++RGD A+ +D A S + + L+ H YN LL++ +
Sbjct: 62 KGPNSDLSRTLTDCTRRGDAAAAMAAFDAAASGPDDLRLAAHQYNQLLHLLATAPFPGHP 121
Query: 159 ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA---FDLVKQ 215
R +F M+ P+EAT TS+AR+ A D E A F LV
Sbjct: 122 AAAARR------------VFAHMLGAGAAPSEATITSLARVVAADADAEGADEAFALVST 169
Query: 216 MK-SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
M+ +G+ P+LRSY P L F + G+ KAY V+AHM S V PEEPE++ALL++S A
Sbjct: 170 MRDKYGLAPRLRSYSPVLAAFRRAGDAGKAYAVEAHMAASAVSPEEPEVAALLEVSAKAG 229
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGW 334
DKVYE +H+LR V V+E T +++E WF S +AA G WD +V+E IV GGG
Sbjct: 230 DADKVYEYMHKLRRAVGCVTEETAEVLEGWFRSEEAAAAGKAEWDACRVKEAIVAKGGGC 289
Query: 335 HGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSD 394
H GWL +G W V+R ++ +G C C RL +DID +T FA S+S LA +RE +++
Sbjct: 290 HQLGWLRTGPWTVQRVRVAADGECGGCGCRLASVDIDMEDTHKFADSISGLALERETKAN 349
Query: 395 FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVI 450
F+ FQEWL H ++A++DGAN+ L Q+ FS QL+ VV LR K PLV+
Sbjct: 350 FSHFQEWLEEHKEYEAIVDGANIALYQQNFSEGGFSLVQLDAVVTELRDRYNGK-WPLVV 408
Query: 451 LHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMR 510
LH R++ + P N+ L++IWR GALYT+P GSNDDWYWLYA + LLVTNDEMR
Sbjct: 409 LHNKRIA-KLMETPSNRHLIEIWRANGALYTSPSGSNDDWYWLYAAIGLNCLLVTNDEMR 467
Query: 511 DHLFQLLG-TSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDD 569
DH+F+LLG +SFF +WK++H+++ + ++ L++PPPYS IQESE GSWHVP+
Sbjct: 468 DHIFELLGSSSFFYKWKQRHRVKYTFNKGKAVLVLPPPYSSEIQESETGSWHVPIEEKSG 527
Query: 570 LEAPRQWLCATRARVKSL 587
E R WLC R + L
Sbjct: 528 DERARTWLCIGRTDLTKL 545
>gi|222619946|gb|EEE56078.1| hypothetical protein OsJ_04901 [Oryza sativa Japonica Group]
Length = 484
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/455 (43%), Positives = 268/455 (58%), Gaps = 45/455 (9%)
Query: 137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV 196
L H YN L ++ + + + D ++ +R +F M+ P+EAT TS+
Sbjct: 16 LLAHQYNQLFHLLA-------TADADSLPNAAAAARR---VFSHMLGSGASPSEATITSL 65
Query: 197 ARLAVAKED----PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
AR+ + + AFDLV M+ KAY VDAHM
Sbjct: 66 ARVTASDASNPAAADEAFDLVATMRD---------------------KPGKAYAVDAHME 104
Query: 253 ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE 312
S V PEEPE++ALL +S A DKVYE +H+L V V E T +++E WF S AA
Sbjct: 105 ASAVAPEEPEIAALLDVSAKAGDADKVYEYMHKLSRTVDCVGEETAEVLEGWFRSGKAAM 164
Query: 313 IGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDP 372
G WD KV++ IV GGG H GWLG+G W V+R ++ +G C C RL C+DID
Sbjct: 165 AGKAEWDACKVKDAIVANGGGCHRLGWLGTGPWTVQRVRVGGDGQCEGCGCRLACVDIDV 224
Query: 373 RETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFY 428
ET+ FA S+++LA QRE + +F++FQEWL HG ++A++DGAN+ L Q+ FS
Sbjct: 225 EETQRFADSVASLALQRETKINFSQFQEWLEEHGAYEAIVDGANIALYQQNFAEGGFSLT 284
Query: 429 QLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSND 488
QL+ VV LR K PLV+LH R++ + N+ L++ WR GALYT+P GSND
Sbjct: 285 QLDAVVTELRDRYNGK-WPLVVLHNKRIA-KLMENASNRHLIETWRANGALYTSPIGSND 342
Query: 489 DWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPY 548
DWYWLYA + LLVTNDEMRDH+F+LLG+SFFP+WK++HQ++ + S+ L+MPPPY
Sbjct: 343 DWYWLYAAIRLNCLLVTNDEMRDHIFELLGSSFFPKWKQRHQVKYTFSKGKAVLMMPPPY 402
Query: 549 SIVIQESENGSWHVPV--ITGDDLEAPRQWLCATR 581
S IQESE GSWHVP+ +GDD R WLC R
Sbjct: 403 SSEIQESEMGSWHVPMEEKSGDDR--ARIWLCIDR 435
>gi|388517681|gb|AFK46902.1| unknown [Medicago truncatula]
Length = 392
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/336 (52%), Positives = 237/336 (70%), Gaps = 6/336 (1%)
Query: 251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
M GV EE E++ALLK+S + D+VY LH+LR+ V V EST +IE+WF S +A
Sbjct: 1 MNSVGVSLEEAEIAALLKVSAKKGRADRVYMYLHKLRSGVTCVEESTATVIEEWFQSSEA 60
Query: 311 AEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDI 370
E+G + DV++VRE ++R GGGWHG GW+G G W V R +D++G+CC C E+LVC+DI
Sbjct: 61 REVGEGDLDVTRVREAVLRNGGGWHGLGWVGKGDWVVSRMSVDDDGICCGCGEQLVCVDI 120
Query: 371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFS 426
D E E FASS++ LA +REV+++F++FQ WL +HG ++A++DGANVGL Q+ FS
Sbjct: 121 DDEEMEKFASSVAALAVEREVKANFSEFQGWLEKHGCYEAIVDGANVGLYQQNFADGGFS 180
Query: 427 FYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGS 486
QL+ VV L S ++ PLV+LH RV G + P ++KL++ W G LYTTP GS
Sbjct: 181 TNQLDDVVKELYNQS-GRKWPLVVLHNKRVK-GLMENPSSRKLVEEWMKNGVLYTTPNGS 238
Query: 487 NDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP 546
NDDWYWLYATV + LLVTNDEMRDH+F+LLG++FF +WKE+HQ+ + + L L MPP
Sbjct: 239 NDDWYWLYATVKLRCLLVTNDEMRDHIFELLGSNFFNQWKERHQVHYTFVKGNLKLQMPP 298
Query: 547 PYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRA 582
PYS+VIQESE GSWHVP+ E+ + WLC TRA
Sbjct: 299 PYSLVIQESEKGSWHVPLAVDTSNESSKPWLCITRA 334
>gi|357131791|ref|XP_003567517.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
mitochondrial-like [Brachypodium distachyon]
Length = 603
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/494 (42%), Positives = 285/494 (57%), Gaps = 23/494 (4%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG----ITLSQHHYNVLLYVCSCKCGSE 156
+ P L L C++RGD A+ +D A +G + + H YN LL++ +
Sbjct: 77 KGPNSDLSRTLTDCTRRGDAAAAMAAFDAAIVSGGPEDLRFAAHQYNQLLHLLA------ 130
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT-SVARLAVAKEDP---EMAFDL 212
S++ +F M+ S+AR V DP + AF+L
Sbjct: 131 SADRSSFPGGHPAVAASARRVFAHMLEATTAAPAEATITSLAR--VIASDPGGGDEAFEL 188
Query: 213 VKQMKS-FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
V M+ +G+ P+LRSYGP L F + G KAY V+AHM S V PEEPEL+ALL +S
Sbjct: 189 VATMRERYGLAPRLRSYGPVLAAFRRTGEAGKAYAVEAHMAASAVSPEEPELAALLDVSA 248
Query: 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG 331
A DKVYE +H+LR V VS T +++E WF S AA G WD +V++ IV G
Sbjct: 249 KAGDADKVYEYMHKLRRAVACVSLETAEVLEGWFQSEKAAMAGKAEWDAQQVKDAIVANG 308
Query: 332 GGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREV 391
GG H GWL +G W V R + +G C C L +DID ET+ FA S+S LA +RE
Sbjct: 309 GGCHQLGWLQNGPWVVRRATVGTDGECGGCGCCLASVDIDMEETQTFADSVSGLALERET 368
Query: 392 RSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMP 447
+++F+ FQEWL H ++A++DGAN+ L Q+ FS QL+ VV LR S + P
Sbjct: 369 KANFSHFQEWLEAHQEYEAIVDGANIALYQQNFADGGFSLVQLDAVVTELRDRY-SGKWP 427
Query: 448 LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTND 507
LVILH R++ + P ++ L++ WR GALYT+P GSNDDWYWLYA + LLVTND
Sbjct: 428 LVILHNKRIA-KLMENPSDRHLIETWRANGALYTSPSGSNDDWYWLYAAIGLNCLLVTND 486
Query: 508 EMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITG 567
EMRDH+F+LLG+SFF +WK++H+++ + ++ LLMPPPYS IQESE GSWHVP+
Sbjct: 487 EMRDHIFELLGSSFFHKWKQRHRVKYTFNKGKAVLLMPPPYSSEIQESETGSWHVPIEEK 546
Query: 568 DDLEAPRQWLCATR 581
E R WLC R
Sbjct: 547 SGDERVRTWLCIGR 560
>gi|414878559|tpg|DAA55690.1| TPA: antiporter/ drug transporter/ transporter [Zea mays]
Length = 599
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 198/461 (42%), Positives = 265/461 (57%), Gaps = 36/461 (7%)
Query: 137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV 196
LS H YN LL++ + DR + + +F M+ P+EAT TS+
Sbjct: 110 LSAHQYNQLLHLLAAT---------DRSSFPSPPAAAARRVFAHMLQAAAPPSEATITSL 160
Query: 197 ARLAVAKEDP----EMAFDLVKQMK-SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251
AR+ A DP + AF+LV MK +G+ P+LRSYGP L F + G KAY V+AHM
Sbjct: 161 ARVIAA--DPASAADEAFELVATMKDKYGLSPRLRSYGPVLAAFRRAGEAAKAYAVEAHM 218
Query: 252 GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAA 311
SGV PEEPEL+ALL +S A DKVYE +H+LR V VSE T ++E WF S +AA
Sbjct: 219 TASGVSPEEPELAALLDVSSRAGDADKVYEYMHKLRQAVHCVSEETAGVVEAWFRSDEAA 278
Query: 312 EIGVLNWDVSKVREGIVRGGGG-------WHGQGWLGSGKWRVERTQIDENGVCCSCNER 364
G WD ++V++ IV GGG W+ +GK + C C
Sbjct: 279 TAGKPQWDAAQVKDAIVANGGGCPPPWVAWNPALDRAAGK-------SGDADQCGGCRFH 331
Query: 365 LVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH- 423
L CIDID L LA +RE +++F++FQEWL + + A++DGAN+ L Q+
Sbjct: 332 LACIDIDMERHRGLLIPLLGLALERETKTNFSRFQEWLEANKDYQAIVDGANIALYQQNF 391
Query: 424 ---NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALY 480
FS QL+ V+ LR K PLVILH R+S + N+ L++ WR GALY
Sbjct: 392 AEGGFSLTQLDGVITELRDRYHGK-WPLVILHNKRISK-LMENSSNRHLIETWRTNGALY 449
Query: 481 TTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGL 540
T+P GSNDDWYWLYA + LLVTNDEMRDH+F+LLG SFFP+WK++H+++ + ++
Sbjct: 450 TSPSGSNDDWYWLYAAIKLNCLLVTNDEMRDHIFELLGPSFFPKWKQRHRVKYTFNKGKA 509
Query: 541 NLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
L+MPPPYS +QESE GSWH+P+ E R WLC R
Sbjct: 510 VLVMPPPYSSELQESEMGSWHIPIEEKSGNERGRIWLCIGR 550
>gi|242060047|ref|XP_002459169.1| hypothetical protein SORBIDRAFT_03g047110 [Sorghum bicolor]
gi|241931144|gb|EES04289.1| hypothetical protein SORBIDRAFT_03g047110 [Sorghum bicolor]
Length = 414
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 129/276 (46%), Positives = 180/276 (65%), Gaps = 6/276 (2%)
Query: 310 AAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID 369
AA G W+ ++V++ IV GGG H GWLG+G W V+R ++ + C C RL CID
Sbjct: 92 AATAGKSEWNAAQVKDAIVANGGGCHRLGWLGTGPWTVQRVRVGADDHCGGCRYRLACID 151
Query: 370 IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NF 425
ID ET FA S++ LA +RE +++F++FQEWL + + A++DGAN+ L Q+ F
Sbjct: 152 IDMEETRRFADSVAGLALERETKTNFSRFQEWLEANKEYQAIVDGANIALYQQNFAEGGF 211
Query: 426 SFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPG 485
S QL+ V+ LR K PLVILH R++ + N+ L++ WR GALYT+P G
Sbjct: 212 SLTQLDAVITELRDRYHGK-WPLVILHDKRIAK-LMENSSNRHLIETWRTNGALYTSPSG 269
Query: 486 SNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMP 545
SNDDWYWLYA + LLVTNDEMRDH+F+LLG+SFFP+WK++H+++ + ++ L+MP
Sbjct: 270 SNDDWYWLYAAIKLNCLLVTNDEMRDHIFELLGSSFFPKWKQRHRVKYTFNKGKAVLVMP 329
Query: 546 PPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
PPYS +QESE G+WH+P+ E R WLC R
Sbjct: 330 PPYSSEVQESEMGAWHIPMEEKSGDERGRIWLCIGR 365
>gi|110741376|dbj|BAF02238.1| hypothetical protein [Arabidopsis thaliana]
Length = 440
Score = 275 bits (702), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 146/335 (43%), Positives = 205/335 (61%), Gaps = 21/335 (6%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
E L L CSKR D+ AL LYD A S+ I L+Q H+ LLY+CS S +
Sbjct: 89 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQT-- 146
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-- 220
+ + RGF+IF +M++ + PNE++ T+VARLA AK D AF LVK + + G
Sbjct: 147 ------VAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGGYAFKLVKDLVAVGGV 200
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
P+LR+Y PAL FC +K YEV+ HM SG+V EE E+SALLK+S + +KVY
Sbjct: 201 SVPRLRTYAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVY 260
Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREGIVRGGGGWHGQG 338
L +LR V VSE T K IE+WF V A+E+ + D+ +R +++ GGGWHG G
Sbjct: 261 RYLQKLRECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLG 320
Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR------ 392
W+G GKW V++ + G C SC+E L C+D + ETE+F +SL LA +R+ +
Sbjct: 321 WVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEP 380
Query: 393 -SDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFS 426
+DF++FQEWL +HG ++A++DGAN+GL Q NF+
Sbjct: 381 MADFSEFQEWLEKHGDYEAILDGANIGLY-QQNFA 414
>gi|218189813|gb|EEC72240.1| hypothetical protein OsI_05356 [Oryza sativa Indica Group]
Length = 602
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 198/349 (56%), Gaps = 21/349 (6%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARS--NGITLSQHHYNVLLYVCSCKCGSESS 158
+ P L L C++RGD A+ +D A S + L H YN L ++ + +
Sbjct: 20 KGPNSDLSRTLTDCTRRGDAAAAMAAFDTALSGPDAPRLLAHQYNQLFHLLA-------T 72
Query: 159 ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED----PEMAFDLVK 214
+ D ++ +R +F M+ P+EAT TS+AR+ + + AFDLV
Sbjct: 73 ADADSLPNAAAAARR---VFSHMLGSGASPSEATITSLARVTASDASNPAAADEAFDLVA 129
Query: 215 QMKS-FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
M+ +G+ P+LRSY P L F + G+ KAY VDAHM S V PEEPE++AL +S A
Sbjct: 130 TMRDKYGVAPRLRSYSPVLAAFRRAGDAGKAYAVDAHMEASAVAPEEPEIAALFDVSAKA 189
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGG 333
DKVYE +H+L V V E T +++E WF S AA G WD V++ IV GGG
Sbjct: 190 GDADKVYEYMHKLSRTVDCVGEETAEVLEGWFRSDKAAMAGKAEWDACNVKDAIVANGGG 249
Query: 334 WHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRS 393
H GWLGSG W V+R ++ NG C C RL C+DID ET+ FA S++ LA QRE ++
Sbjct: 250 CHRLGWLGSGPWTVQRVRVGGNGQCEGCGCRLACVDIDVEETQRFADSVAGLALQRETKT 309
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLR 438
+F++FQEWL HG ++A++DGAN+ L Q+ FS QL+ VV LR
Sbjct: 310 NFSQFQEWLEGHGAYEAIVDGANIALYQQNFAEGGFSLTQLDAVVTELR 358
>gi|2894568|emb|CAA17157.1| putative protein [Arabidopsis thaliana]
gi|7269035|emb|CAB79145.1| putative protein [Arabidopsis thaliana]
Length = 1094
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 155/401 (38%), Positives = 223/401 (55%), Gaps = 56/401 (13%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
E L L CSKR D+ AL LYD A S+ I L+Q H+ LLY+CS S +
Sbjct: 505 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQT-- 562
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-- 220
+ + RGF+IF +M++ + PNE++ T+VARLA AK D + AF LVK + + G
Sbjct: 563 ------VAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGV 616
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
P+LR+Y PAL FC +K YEV+ HM SG+V EE E+SALLK
Sbjct: 617 SVPRLRTYAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLK------------ 664
Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREGIVRGGGGWHGQG 338
+LR V VSE T K IE+WF V A+E+ + D+ +R +++ GGGWHG G
Sbjct: 665 ----KLRECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLG 720
Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR------ 392
W+G GKW V++ + G C SC+E L C+D + ETE+F +SL LA +R+ +
Sbjct: 721 WVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEP 780
Query: 393 -SDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMP 447
+DF++FQEWL +HG ++A++DGAN+GL Q+ FS Q+ L Q S +KR+
Sbjct: 781 MADFSEFQEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQI------LSQFS-TKRLT 833
Query: 448 LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSND 488
I + + G +N+ +++ + PP SND
Sbjct: 834 YDISKRFFLFGWKRLNQQNQDIMN---------SPPPSSND 865
>gi|384253474|gb|EIE26949.1| hypothetical protein COCSUDRAFT_59444 [Coccomyxa subellipsoidea
C-169]
Length = 581
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 170/549 (30%), Positives = 260/549 (47%), Gaps = 97/549 (17%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS---- 150
+KKAR+ +PEG LR + +K D L YD A + GI++ + LLY+CS
Sbjct: 62 RKKARKMTPEGGLRADIFKAAKENDPLGGLAAYDRAVAEGISMGNDLFETLLYLCSGGQA 121
Query: 151 ------------CKCGSESSENGD----------------------------RENDSNLG 170
K S+ E+ D RE+
Sbjct: 122 WDAKLPAPAQTDAKSASQPGEDVDARKAAHKEASTSGQATSGNGATPEQALQRESIDKAA 181
Query: 171 ----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+RG E++Q + +E +T++AR+A + P+ A D ++ + G
Sbjct: 182 HMTSEEWVKVARRGKELWQTLKERGGGKSEVCYTALARMAATEGKPDQALDAAREALATG 241
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ KLRS+ PAL +C GN D A++VD + E + E E + L+ + +
Sbjct: 242 LHLKLRSFVPALKAYCAAGNVDAAFKVDELIAEQELDLTEDEYALLIGVCAYGAVWARAE 301
Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL 340
+L R+ + + E T +E +F S AA+ L
Sbjct: 302 GVLTRIARELTALQEGTLAAVERFFRSPSAAQS--------------------------L 335
Query: 341 GSGK-WRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR-SDFNKF 398
G G+ W +ER + E+G C+ +L +D+ P E FA ++ LA Q+E R SDF+ F
Sbjct: 336 GEGQSWVLERCSVSESGQPSCCDGQLEAVDLSPEEYHAFAEGIAALARQKEKRPSDFDTF 395
Query: 399 QEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHKG 454
+ W+ R+GP+ +IDGANV L Q+ FSF Q++ V+++LR+ P + PL++LH+
Sbjct: 396 RAWVDRNGPYGCLIDGANVALFGQNWEAGGFSFAQISAVLDQLREERPDLK-PLLMLHQS 454
Query: 455 RVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDH 512
RV A+ + LL+ R YTTP GSNDDWYWLYA V +L+V+ DEMRDH
Sbjct: 455 RVKAELARERRAAALLERLRRDHLFYTTPFGSNDDWYWLYAAVKSGPDALIVSCDEMRDH 514
Query: 513 LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLM-PPPYSIVIQE-SENGSWHVPVITGDDL 570
LFQLL +F +WK++HQ+ + G +L P PY++ Q + +W P D
Sbjct: 515 LFQLLAPKYFRKWKQRHQVYFKFAPKGRAVLTHPAPYTVCTQHLLVSNAWLFPSAESD-- 572
Query: 571 EAPRQWLCA 579
QWLCA
Sbjct: 573 ----QWLCA 577
>gi|147769934|emb|CAN70051.1| hypothetical protein VITISV_034435 [Vitis vinifera]
Length = 753
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 126/297 (42%), Positives = 180/297 (60%), Gaps = 23/297 (7%)
Query: 130 ARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN 189
A S L +H N LLY+C+ SS+ L L GF IF ++ V PN
Sbjct: 475 AVSQNFRLIYYHCNALLYLCTISVDEPSSKA--------LALDYGFRIFDHVVNSGVTPN 526
Query: 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249
EAT T+VA LA AK D ++AF++V+ M ++ + P+LR+YGPALF FC +KA+ +
Sbjct: 527 EATITAVASLATAKSDGDLAFEVVRTMVNYELSPRLRTYGPALFWFCTNLEGEKAWRSRS 586
Query: 250 HMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309
+K+S + + DKVY LH+LRT VR VSEST +IIE WF
Sbjct: 587 W--------------PAVKVSAEMGRGDKVYAYLHKLRTAVRSVSESTAEIIEGWFCGEA 632
Query: 310 AAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID 369
+E+G + + + E ++ GGGWHGQGW+G GKW V R ++D +G C SC E+L +D
Sbjct: 633 TSEVGGADCCLGAIEEVALKNGGGWHGQGWIGKGKWVVCRAKVDSSGQCGSCREQLATVD 692
Query: 370 IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFS 426
ID ETE F+ S++ +A +REVRS+F +FQ+WL +H ++A++DGAN+GL Q NF+
Sbjct: 693 IDRAETETFSESVAAMAMEREVRSNFREFQDWLDKHADYEAIVDGANIGLY-QQNFA 748
>gi|308799561|ref|XP_003074561.1| unnamed protein product [Ostreococcus tauri]
gi|116000732|emb|CAL50412.1| unnamed protein product [Ostreococcus tauri]
Length = 506
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 162/500 (32%), Positives = 248/500 (49%), Gaps = 64/500 (12%)
Query: 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSN--GITLSQHHYNVLLYVCSCKCGSESSEN 160
P V R +D +R + A + +++AR TL+ H NVLL++C+ G+ +S
Sbjct: 49 PAAVARRAIDAACQRDEFDAAWKTFEEAREKEGTYTLAPHSCNVLLHMCAGGSGAWTSGM 108
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
E + + EI M + NE ++T++AR+ A D + A + K
Sbjct: 109 ASAEC---VRGDKAVEITSYMEKHGIAMNEMSYTALARVRAASGDVDGALEAAALCKEKK 165
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ PK+R+Y AL + G+ K VDA M G++P E E +LK A++ D +
Sbjct: 166 LTPKVRTYACALHACARGGDLRKMERVDAIMRGHGLLPTELEFMEMLKAYRIAEEFDAGF 225
Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL 340
++L ++RT +R S+ + + WF + GW
Sbjct: 226 DMLRKMRTEIRCPSDEMCEELRVWFGAA----------------------------PGWC 257
Query: 341 GSGKWRVERTQIDENGVCCSC--------NERLVCIDIDPRETENFASSLSNLACQREVR 392
+ + +DE G + +L I + E EN S ++ LAC+RE
Sbjct: 258 VA-----DEVSVDEAGTAVAVLVMDEKRIQIQLKAISLTEDERENLLSGIAKLACEREAI 312
Query: 393 SDFNKFQEWL-GRHGPFDAVIDGANVGLVNQHNFS-----FYQLNTVVNRLRQMS-PSKR 445
S+F F WL G+ +AV+DGANVG+ NQ NFS F Q+ V+ +LRQ +
Sbjct: 313 SEFENFMNWLKGKKDGMNAVVDGANVGMYNQ-NFSTSGMNFNQVEKVLEKLRQNAREGDA 371
Query: 446 MPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLL 503
P+V LH+ RV GPA+ P+N++ L W G L+TT GSNDDWYWLYA V+ K++L
Sbjct: 372 PPMVFLHQRRVENGPARKPQNQERLAKWDSAGELFTTAHGSNDDWYWLYAAVHAGDKAVL 431
Query: 504 VTNDEMRDHLFQLLGT--SFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWH 561
VTNDE RDH+FQ+L F RWKE+HQ+R S + ++L P ++ +QE+++GSW
Sbjct: 432 VTNDECRDHVFQMLPAPQGLFYRWKERHQVRFSFTTGEVDLEYPALFTTCMQEADDGSWW 491
Query: 562 VPVITGDDLEAPRQWLCATR 581
+ D WLCA +
Sbjct: 492 MFPQEDDG------WLCACK 505
>gi|4581132|gb|AAD24622.1| hypothetical protein [Arabidopsis thaliana]
Length = 369
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 148/355 (41%), Positives = 205/355 (57%), Gaps = 43/355 (12%)
Query: 92 NKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCS 150
NK KK +R +PE L L+ CSK D+ AL LYD A S+ + LSQ H+ LLY+CS
Sbjct: 20 NKKKKVSR--NPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCS 77
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
S + L + RGFEIF +M++ + PNEA+ TSVARLA AK + + AF
Sbjct: 78 ASITDISLQ--------YLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAF 129
Query: 211 DLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+VK+ S G P+LR+Y PAL FC+ +K YEV+ HM +G+ EE E+SALLK
Sbjct: 130 KVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLK 189
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREG 326
LR V VSE T KIIE+WF A E+G + DV +RE
Sbjct: 190 -----------------LREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREA 232
Query: 327 IVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLA 386
++ GGGWHG GW+G GKW V++ + G C SC+E+L C+D + ET+ F SL LA
Sbjct: 233 VLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALA 292
Query: 387 CQREVRSD-------FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQL 430
R+ + + F++FQ+WL +HG ++A++DGAN+GL Q+ +FS Q+
Sbjct: 293 MDRKTKMNSCETNVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQV 347
>gi|145341737|ref|XP_001415960.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576183|gb|ABO94252.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 374
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 138/403 (34%), Positives = 213/403 (52%), Gaps = 42/403 (10%)
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
+E ++T++AR+ A D E A D + +K + PK+R+Y AL K G+ +K V+
Sbjct: 2 SEMSYTALARVRAAAGDVEGALDAARALKEEKLTPKVRTYACALHASAKKGDLEKMEAVE 61
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
A + + G++P E E A+L+ A+ D + +L R+RT +R S+ + + WF +V
Sbjct: 62 AMLRDEGLLPTELEFMAMLRAYRAAEAFDGGFAMLRRMRTEIRSPSDEMSEELRAWFSAV 121
Query: 309 DAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCI 368
W V+ VR L + RVE +L I
Sbjct: 122 P-------GWSVADE----VRVDDAGAAVAVLAMEEKRVEL--------------QLKAI 156
Query: 369 DIDPRETENFASSLSNLACQREVRSDFNKFQEWLG-RHGPFDAVIDGANVGLVNQHNFS- 426
+ E + + ++ LAC+RE +S+F+ F WL + +A++DGANVG+ NQ NFS
Sbjct: 157 SLTEEERADLLAGIAKLACEREAQSEFDNFMNWLNVKKDGMNAIVDGANVGMYNQ-NFST 215
Query: 427 ----FYQLNTVVNRLRQMSPSKRMP-LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYT 481
F Q+ V+ LR+ + P + LH+ RV GGPA+ P N+ LL W G L+T
Sbjct: 216 SGMNFNQVEKVLVELRKRAKEGDAPPIAFLHQRRVEGGPARKPHNQALLAKWDGAGELFT 275
Query: 482 TPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGT-SFFPRWKEKHQIRLSVSRD 538
T GSNDDWYWLYA V+ K+ LVTNDE RDH+FQ+L + F RWKE+HQ+R +++
Sbjct: 276 TAHGSNDDWYWLYAAVHAGDKAFLVTNDECRDHVFQMLPSPKLFYRWKERHQVRFTITAG 335
Query: 539 GLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
+ L P ++ +QE+++ SW + +D WLCA +
Sbjct: 336 EVELDYPAVFTTCMQEADDSSWW--MFPQED----ESWLCACK 372
>gi|297739451|emb|CBI29633.3| unnamed protein product [Vitis vinifera]
Length = 267
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/201 (53%), Positives = 137/201 (68%), Gaps = 6/201 (2%)
Query: 385 LACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQM 440
+A +REVRS+F +FQ+WL +H ++A++DGAN+GL Q+ FS QL+ VV L
Sbjct: 1 MAMEREVRSNFREFQDWLDKHADYEAIVDGANIGLYQQNFANGEFSIPQLDAVVKELYDR 60
Query: 441 SPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCK 500
S KR PLVILH R ++ N+KLL W G LYTTP GSNDDWYWLYA V K
Sbjct: 61 SQKKR-PLVILHNKRFRK-LSENASNRKLLQEWLTQGVLYTTPNGSNDDWYWLYAAVKLK 118
Query: 501 SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSW 560
LLVTNDEMRDH+F+LLG+SFF +WKE+HQ+R + + + LLMPP YS+ IQES G+W
Sbjct: 119 CLLVTNDEMRDHIFELLGSSFFLKWKERHQVRYTFVKGNVKLLMPPSYSLFIQESVKGTW 178
Query: 561 HVPVITGDDLEAPRQWLCATR 581
HVPV + E+ R W C TR
Sbjct: 179 HVPVASESSDESLRTWHCITR 199
>gi|325183720|emb|CCA18179.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 481
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 149/512 (29%), Positives = 243/512 (47%), Gaps = 71/512 (13%)
Query: 82 SSAPNTGTMSNKSKKKARRESPEGVL----RHKLDMCSKRGDVFEALRLYDDARSNGITL 137
SSA N G K ++ RR++ E L R +++C K GD AL + + +
Sbjct: 20 SSASNYG---KKKARRLRRQTDEEKLIAESRRGIELCVKSGDAIGALSTLQRLKDQNLEV 76
Query: 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM--ITDKVDPNEATFTS 195
+ Y V L CS ++ + + F++F++M IT++ +E T T+
Sbjct: 77 PPYLYRVTLNACSQSLKVDTL------------VDQTFKLFEEMESITNQKLIDENTLTA 124
Query: 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255
+ R+ V + + L +M+++ I PKLR++ L + G +KA E+ + + ++G
Sbjct: 125 MIRICVQSKQLDRCALLFDKMRNYDIKPKLRTFSSLLSAYAAAGTLEKALEMKSMIEQNG 184
Query: 256 VVPEEPELSALLK-LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG 314
+ E E ALL S ++ +V +L + S ST+ I+ W+
Sbjct: 185 IKMTESEYIALLDGCSAESDRV-LFRTMLDEFAQNIMVPSRSTWDNIKHWY--------- 234
Query: 315 VLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRE 374
RG G+ KW + +D NG C RL ID+ E
Sbjct: 235 -------------TRGAICVDGE------KWDCQVINVDANGCCPLTKNRLKSIDLTLEE 275
Query: 375 TENFASSLSNL-ACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQ 429
+ + L + E + + +F+EW +HGP+D ++D ANV NQ+ F++ Q
Sbjct: 276 KQELLDKIEALIGMEEEKLAQWKEFKEWHDQHGPYDVIVDAANVAYYNQNFEGGGFNYRQ 335
Query: 430 LNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKN-KKLLDIWRDGGALYTTPPGSND 488
+ V++R +++ + LV+LHK +S G +IP+ + +L W +Y PG+ND
Sbjct: 336 ITRVIDRYQKLG---KKVLVVLHKRHMSEG--RIPEAYRSILTDWISSQTMYNCLPGNND 390
Query: 489 DWYWLYATVNCK--SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP 546
DWYWLYA V + + LV+NDEMRDH FQ++ F WKE+H +R SV+ L + P
Sbjct: 391 DWYWLYAAVQGRIGAYLVSNDEMRDHHFQMIQNETFGLWKERHLVRFSVNEHQLRVEEPS 450
Query: 547 PYSIVIQESENGSWHVPVITGDDLEAPRQWLC 578
PYS +Q +N W+ P DD E WLC
Sbjct: 451 PYSKRMQSLDN-VWYFP--NTDDSE----WLC 475
>gi|449526245|ref|XP_004170124.1| PREDICTED: proteinaceous RNase P 1,
chloroplastic/mitochondrial-like [Cucumis sativus]
Length = 327
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/138 (65%), Positives = 111/138 (80%)
Query: 399 QEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSG 458
Q WL +HGPFDAVIDGANVGLVN+ F+F QL V ++R++SPSK+MPL+ILHK R++
Sbjct: 186 QGWLEKHGPFDAVIDGANVGLVNERQFNFIQLKRAVYQMRELSPSKKMPLIILHKRRITD 245
Query: 459 GPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLG 518
GPA+ P N KL++ W++ GALY TP NDDWYWLYA V K LL+TNDEMRDHLFQLLG
Sbjct: 246 GPARNPNNMKLIETWKNCGALYATPYSVNDDWYWLYAAVRFKCLLLTNDEMRDHLFQLLG 305
Query: 519 TSFFPRWKEKHQIRLSVS 536
+FFP+WKEKHQ+ S+S
Sbjct: 306 NTFFPQWKEKHQVFSSLS 323
>gi|301120109|ref|XP_002907782.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106294|gb|EEY64346.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 505
Score = 199 bits (505), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 147/548 (26%), Positives = 252/548 (45%), Gaps = 79/548 (14%)
Query: 68 LCTLAFSKK----STVNESSAPN---TGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDV 120
+ +LA SK+ + + S P T T + +K+ E E R ++ C++ D
Sbjct: 1 MASLAGSKRPAEVALAADGSEPERKLTKTQRRRERKQTPAEKLEYQYRIQVQKCAQENDA 60
Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
AL +Y+ + G+ ++ + Y+V++ VCS + +NG + ++Q
Sbjct: 61 TRALEVYEQMKREGVNVAPYIYSVVINVCSKADDPAAFKNG------------AYNVYQD 108
Query: 181 M--------ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
M K D +E ++++ +L +D + ++ +M+ + PKLR++ P L
Sbjct: 109 MKQASAASKQKKKSDSSEPMYSAMIKLCSKAQDFDTCEIIITEMEVAKVDPKLRTFSPLL 168
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
GN DK V + + E + ALL+ SV A ++ Y L + Q
Sbjct: 169 QALSDAGNLDKCIGVHEKLLSHELELTEDDYVALLRASVKAGSGERFYAFLDSFIDEIWQ 228
Query: 293 VSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQI 352
S ST+ ++++WF+S +AA + W K+ EG +
Sbjct: 229 PSLSTWDVLKEWFNS-EAARMNGRTW---KITEG------------------------SV 260
Query: 353 DENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR-SDFNKFQEWLGRHGPFDAV 411
GVC ++L +++ + T + + NL E R + +++F++WL GP+D V
Sbjct: 261 SREGVCFVTGDQLQSVELSAKSTAELLAKIENLVRTDEKRMTQWDEFKQWLEEFGPYDVV 320
Query: 412 IDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIP-KN 466
ID ANVG NQ+ F++ Q+ +V + + LV+LH+ R S ++P ++
Sbjct: 321 IDAANVGYCNQNFEGGGFNYAQIELMV---QHYEAQDKKVLVVLHERRTSD--EEVPAEH 375
Query: 467 KKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGTSFFPR 524
+ + W+ ++ G+NDDWYWLYA V ++LL++NDEMRDH FQ++ F R
Sbjct: 376 RAQIAEWQASHKMFNCQYGNNDDWYWLYAAVKLGGRTLLISNDEMRDHHFQMIHNRAFRR 435
Query: 525 WKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPV--ITGDDLE--------APR 574
WKE+HQ+ V + + P PYS Q +WH P DD A R
Sbjct: 436 WKERHQVHYQVYGSRVTVDEPLPYSARPQRV-GDNWHFPAADTAADDSTTETAPAQVADR 494
Query: 575 QWLCATRA 582
+WLC A
Sbjct: 495 KWLCVELA 502
>gi|412992232|emb|CCO19945.1| predicted protein [Bathycoccus prasinos]
Length = 557
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 145/515 (28%), Positives = 246/515 (47%), Gaps = 74/515 (14%)
Query: 108 RHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
R K+D + R D A YD++++N I L H NVLL++CS E+ +E D
Sbjct: 33 RKKIDDAASRNDRRLAFTTYDESKNNPAIALPMHTLNVLLHLCSA--NDENDSFSTKEED 90
Query: 167 SNLGLKRGFEIFQQMITDKVDPN----------EATFTSVARLAVAKEDPEMAFDLVKQM 216
+R EIF +++ D + E ++T++AR+ + E +F++V
Sbjct: 91 K----ERAEEIFFRLMKDSEEEEDKHQQGRRKTEMSYTAMARVYARNGEFEKSFEMVDLC 146
Query: 217 KSF----------------GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
K+ + PKLR+Y P+L GFC+ GN +A +V + G+ E
Sbjct: 147 KNGGALGKGKDGGGKKTQQKLTPKLRTYAPSLRGFCESGNWKRAEDVFEAIEREGLECTE 206
Query: 261 PELSALLKLSVDAKKV--DKVYEILHRLRTLVRQVSESTFKIIEDWF---------DSVD 309
E +A++ + KK + + +L ++++ VR + + +E +F ++V+
Sbjct: 207 MEFTAMMSVYGREKKTCEENGFRMLRKMKSKVRTCGKELIESVERFFKAEPNAWRCETVE 266
Query: 310 AAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID 369
E ++VS I+ + + E+ Q L +
Sbjct: 267 NVESSSGRFEVSS-ENTIIGSSSDNNNNNNNNNNSNNSEKKQTF----------NLKRVG 315
Query: 370 IDPRETENFASSLSNLACQREVRSDFNKFQEWL-GRHGPFDAVIDGANVGLVNQH----N 424
++ E++ +S+ LA +RE ++F+ F WL R ++DGANVG+ NQ+
Sbjct: 316 LNEVESKELIASVGKLAREREAGANFDDFCNWLEAREAKVQCIVDGANVGMANQNFAGSR 375
Query: 425 FSFYQLNTVVNRLRQM----------SPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWR 474
F F QL+ VV R+ SK+ P+V LH+ R A+ +K+L+ R
Sbjct: 376 FHFGQLDNVVEECRRRYCVCSTSDASDASKQRPVVFLHQRRTKDHAAKHQFGEKILNKLR 435
Query: 475 DGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLL-GTSFFPRWKEKHQI 531
++ TP GSNDDWYWLYA + ++L++NDEMRDH+FQ+L + RWKE+HQ+
Sbjct: 436 QNKEIFVTPHGSNDDWYWLYAALVAGEDAVLISNDEMRDHVFQMLPDPNLLRRWKERHQV 495
Query: 532 RLSVSRDGLNLLMPPPYSIVIQESENGS-WHVPVI 565
R SV++ + L P ++ IQE+E W +P +
Sbjct: 496 RFSVTKGEVELYEPAVFTTCIQENEEEEYWMIPFV 530
>gi|348689807|gb|EGZ29621.1| hypothetical protein PHYSODRAFT_252680 [Phytophthora sojae]
Length = 512
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 136/506 (26%), Positives = 234/506 (46%), Gaps = 65/506 (12%)
Query: 87 TGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146
T T + ++++ E E R ++ C+ D AL++Y+ +S G+ ++ + YNV++
Sbjct: 24 TKTERRRERRQSSAEKLEYQYRIQVQNCAHDNDAARALQVYEQMKSEGVNVAPYIYNVVI 83
Query: 147 YVCS-------CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARL 199
VCS K G+ + +E N ++ + +P ++++ ++
Sbjct: 84 NVCSRMEDLAAFKSGAYAVYQDMKEACDNAKQQQQKGKKKHQQQQVPEP---IYSAMVKI 140
Query: 200 AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+D E L+ +M+ + PKLR++GP L G+ DK V ++ + P
Sbjct: 141 CSKAQDFEACETLIAEMEEAKVEPKLRTFGPLLQAHSDAGHLDKCIWVHDKFLKNELEPT 200
Query: 260 EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWD 319
E + ALL+ V A + Y L R V Q S +T+ ++++WF S +AA++
Sbjct: 201 EADYVALLRACVKAGDAQRFYAFLDRFIDDVWQPSLTTWDVLKEWFSS-EAAQV------ 253
Query: 320 VSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFA 379
KW++ + + GVC ++L +++ P T
Sbjct: 254 ---------------------DGRKWKITEGTVSKEGVCSVTGDQLQSLELSPELTSELL 292
Query: 380 SSLSNL----------ACQREVRSD------FNKFQEWLGRHGPFDAVIDGANVGLVNQH 423
+ + + A ++ VR+D +++F++WL GPFD VID ANVG NQ+
Sbjct: 293 AKVIAVVVYVNAGEWAAIEKLVRTDEKRKAQWDEFKQWLEEFGPFDVVIDAANVGYCNQN 352
Query: 424 ----NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGAL 479
F++ Q+ +V + + LV+LH+ R S P+++ L WR +
Sbjct: 353 FEGGGFNYKQIELMV---QHYEAQGKKVLVVLHERRTSDEQVP-PEHRAQLAQWRADHKM 408
Query: 480 YTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR 537
+ G+NDDWYWLYA V ++L+V+NDEMRDH FQ++ F RWKE+HQ+ V
Sbjct: 409 FNCQQGNNDDWYWLYAAVKLGGRTLMVSNDEMRDHHFQMIHNRAFGRWKERHQVHYQVHG 468
Query: 538 DGLNLLMPPPYSIVIQESENGSWHVP 563
+ P PYS Q WH P
Sbjct: 469 SRATVDEPLPYSARPQRV-GDVWHFP 493
>gi|302832000|ref|XP_002947565.1| hypothetical protein VOLCADRAFT_120484 [Volvox carteri f.
nagariensis]
gi|300267429|gb|EFJ51613.1| hypothetical protein VOLCADRAFT_120484 [Volvox carteri f.
nagariensis]
Length = 396
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/399 (29%), Positives = 210/399 (52%), Gaps = 25/399 (6%)
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M + + P++ T+ ++AR +P+ A L ++ G +LR + PA G+C G+
Sbjct: 1 MKSAGMKPDQGTYLALARREALLGNPQAALQLTQECIQDGKLAQLRMFHPAQVGYCLSGD 60
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
+ + +D+ + + E E + LL+ A +++ +L R+++ + Q+S T
Sbjct: 61 VAQLHHIDSIIASHRLDNTEYEFARLLEGIAAAGTYEQMKAVLVRMQSDMNQMSPETAGH 120
Query: 301 IEDWFDSVDAAEIGVLNWDVSKVREGIVR---GGGGWHGQGWLGSGKWRV-ERTQIDENG 356
I +F+ AA+ D R G+VR GG G W +WRV + ++ E+G
Sbjct: 121 ITSFFEKNAAAQQAFAPADQGGCR-GLVRHITDAGGDSGGEW----RWRVVQNAEVAEDG 175
Query: 357 VCCSCNERLVCIDIDPRETENFASSLSNLACQR--EVRSDFNKFQEWLGRHGPFDAVIDG 414
C + + ID++ E + FA +++ LA + DF+ + +W R+GP+D ++D
Sbjct: 176 RCEAAGGTVKVIDLEDEEWDAFAKAIAELARKNMGSRAGDFDAYTQWYERNGPYDIMVDA 235
Query: 415 ANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLL 470
ANV Q+ F++ Q+ + LRQ P+K++ LV++H+ RVS ++ P ++ +
Sbjct: 236 ANVAFFGQNREGGGFNWRQVQHMYEMLRQRFPNKKI-LVMVHRKRVSDAESRAPGVQEFI 294
Query: 471 DIWRDGGALYTTPPGSNDDWYWLYATVNCK--SLLVTNDEMRDHLFQLLGTSFFPRWKEK 528
+ R + Y TPPG+NDDW+W+YA+V K LL++NDE+RDH+F LL F +WKE+
Sbjct: 295 ERLRRARSFYHTPPGANDDWFWMYASVRAKHNGLLISNDELRDHIFSLLRPRHFLKWKER 354
Query: 529 HQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITG 567
H +S + P + Q E+G+W +PV G
Sbjct: 355 HIAHYRLSSNN-------PGYLSTQLEESGAWVLPVNDG 386
>gi|307108020|gb|EFN56261.1| hypothetical protein CHLNCDRAFT_145111 [Chlorella variabilis]
Length = 579
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 172/374 (45%), Gaps = 63/374 (16%)
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L +M + G+ PKLRS+ PAL + + G KA+EVDA + + EPE L++ +
Sbjct: 237 LPPEMVAAGVAPKLRSFTPALIAYAEAGECAKAFEVDAAIAAHQLDLGEPEFGRLVQAAA 296
Query: 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG 331
+L R+ + + ++ + F S AA + EG+
Sbjct: 297 AGASWAAALGVLRRIGAELTTLQPASLARVAALFASPTAA----------RAFEGVP--- 343
Query: 332 GGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREV 391
G G+W V +D G C C RL +D+ E FA ++ +A ++E
Sbjct: 344 ---------GGGRWEVGPAAVDGAGRCSRCGGRLAALDLSGEELRQFAQGIAAIAERQER 394
Query: 392 R-SDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRM 446
R +DF +F+ WL HGPF AV+DGANV L Q+ F+F Q+ V + L P +
Sbjct: 395 RPNDFKQFKCWLEEHGPFGAVVDGANVALYGQNFDSGGFNFGQIRAVCDHLASRHPDLK- 453
Query: 447 PLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLV 504
PL++L+ GR A+ P + L+ + + Y TP GSNDDWYW+YA V + LLV
Sbjct: 454 PLLLLNVGRTKAAQARAPAAQALMRELGEAKSFYVTPAGSNDDWYWIYAAVTAGERGLLV 513
Query: 505 TNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPV 564
+NDEMRDH+FQL P PY+ QE E GSW P
Sbjct: 514 SNDEMRDHIFQLD--------------------------YPAPYTTCAQELECGSWVFPG 547
Query: 565 ITGDDLEAPRQWLC 578
G WLC
Sbjct: 548 ADGS-------WLC 554
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS 150
+PE R + M +K D+ AL ++D A++ G+ L Y LLY+CS
Sbjct: 48 TPEKQARAAIHMAAKANDLPAALAVFDRAKAEGVKLGTELYVSLLYLCS 96
>gi|428168076|gb|EKX37025.1| hypothetical protein GUITHDRAFT_145271 [Guillardia theta CCMP2712]
Length = 574
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/427 (26%), Positives = 197/427 (46%), Gaps = 71/427 (16%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYGPALFG 234
E+ + M V P EA FT++ R +A +P A +++ + MK+ PK R++ P L
Sbjct: 68 ELMKVMKEQNVQPEEAFFTTLIRFHLAMGNPSSAREVLGEMMKAENTLPKRRTFLPVLEA 127
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
C+ GN ++A+++ M E G+V E E L+KL ++ E+L +R ++ +
Sbjct: 128 VCEGGNEEEAFKMLTLMRELGIVMGESEFIYLVKLCSFDYARHRMPEVLEEMRQVLYGIQ 187
Query: 295 ESTFKIIEDWFDSVDAAEIGVLN----WDVSKVREGIVRGGGGWHGQGWLGSGKWRVERT 350
+ + + +WF+ G + V + R GIV
Sbjct: 188 QPLAEELRNWFEKTHNVSTGRITEFGMCSVCQARLGIV---------------------- 225
Query: 351 QIDENGVCCSCN--ERLVCIDIDPRETENFASSLSNL---ACQREVR--SDFNKFQEWLG 403
+ E V C E+++ +D+D + + + N+ + +R + F F+ WL
Sbjct: 226 DVKEEQVARMCEDLEKMIQLDLDGKSNSHELALQDNVFRTGTPQGLRGGTHFKTFKAWLE 285
Query: 404 RHGPFDAVIDGANVGLVNQH-------NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRV 456
++GP+D ++DGANVG Q +++Q++ V+ L++ S R+ L+ILH +
Sbjct: 286 KNGPWDVIVDGANVGYYGQSGNQRRDLQLNYHQIDRVIRSLQRRGHSVRV-LLILHAQHI 344
Query: 457 SGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYA----TVNCKS-LLVTNDEMRD 511
P K+++ W G +Y TP G NDDW+W+YA T KS L+++ND M+D
Sbjct: 345 KKARHN-PDALKMVERWLSEGIIYVTPSGMNDDWFWIYAGLWSTRKLKSTLILSNDGMQD 403
Query: 512 HLFQLLGTSF---------------------FPRWKEKHQIRLSVSRDGLNLL--MPPPY 548
H + L+ TS F +WKE+H + SR ++ P PY
Sbjct: 404 HHYALVETSRKFGGEVNSKRMMADTISYHKEFLKWKERHWVTYEWSRSVGRIVFNFPLPY 463
Query: 549 SIVIQES 555
S IQ S
Sbjct: 464 STCIQGS 470
>gi|255083625|ref|XP_002508387.1| predicted protein [Micromonas sp. RCC299]
gi|226523664|gb|ACO69645.1| predicted protein [Micromonas sp. RCC299]
Length = 585
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/383 (26%), Positives = 171/383 (44%), Gaps = 67/383 (17%)
Query: 88 GTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY 147
G ++ +KK P R ++D+ +GD A +D A +G L H +NVLL+
Sbjct: 15 GGSRDRKRKKNFAPKPGQAARREIDVACAKGDTAAAFAAFDAAVDSGEPLQPHSFNVLLH 74
Query: 148 VCSCKCGSESSENGDRENDSNLG-------------------LKRGFEIFQQMITDKVDP 188
+CS +S G+ ++D+ +R IF +M+ V
Sbjct: 75 LCS----GGTSTGGNYKDDAKTADGATPPAAKVVVPPKDAVHPERANAIFNKMVELDVQR 130
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
E T+T++AR+ A +P A D+VK++ + PKLR++ PAL FC G+ + A E +
Sbjct: 131 TEMTYTALARIEAASGEPRRALDVVKRLIDERLTPKLRTFAPALHAFCMKGDIEGALEAE 190
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
A + +G+ E E + LL DA++ + +L R+R VR +S + +FD
Sbjct: 191 AEIANAGIEISEAEYAVLLNAYADAERWEDGLALLRRMREEVRTLSTPLVESTRRFFD-- 248
Query: 309 DAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERT-QIDENGVCCSCNE---- 363
R G WR+E + ++DE S
Sbjct: 249 --------------------RHPG------------WRLEASAEVDEATGAASSTPSGKK 276
Query: 364 -RLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQ 422
+L I++ + + + LA +RE +S F+ F WL + GP ++DGANVG+ NQ
Sbjct: 277 MQLAAINLSASDRAALLAGIGKLAREREAKSSFDGFVRWLAKRGPLPYLVDGANVGMYNQ 336
Query: 423 H----NFSFYQLNTVVNRLRQMS 441
+ F+F Q+ +N LR ++
Sbjct: 337 NFHESRFNFNQVEKAMNALRPLA 359
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 84/144 (58%), Gaps = 10/144 (6%)
Query: 442 PSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC-- 499
P +P+ LH RV GGPA P+ K LLD W+ G L+ P GSNDDWYWLYA V
Sbjct: 447 PGVDVPVNFLHVRRVRGGPANHPRAKALLDGWKRCGELFVCPAGSNDDWYWLYAAVASGD 506
Query: 500 KSLLVTNDEMRDHLFQLL-GTSFFPRWKEKHQIRLSVS-RDGLNLLMPPPYSIVIQESEN 557
+ LV+NDEMRDH FQ+L F +WKE+HQ+R +S GL PPPY+ +QE +
Sbjct: 507 DAFLVSNDEMRDHAFQMLPAPRLFAKWKERHQVRFHMSAATGLEFYHPPPYTACVQEGSD 566
Query: 558 GSWHVPVITGDDLEAPRQWLCATR 581
W + GDD E W CA R
Sbjct: 567 LDWW--LFPGDDGE----WTCAVR 584
>gi|219110673|ref|XP_002177088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411623|gb|EEC51551.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 637
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 137/534 (25%), Positives = 221/534 (41%), Gaps = 88/534 (16%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC----------------- 149
LR + C K D+ A+ +Y+ A ++GI + + LL +C
Sbjct: 72 LRQTVQQCCKIDDLMTAMEVYEQAVADGIKMEAQSFYNLLNLCDGLGDRSIHIGTPKQSI 131
Query: 150 SCKCGSESSENGDRENDSNLGLKR--GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPE 207
C + E DR ++ +R F I + M + E +T++ +L
Sbjct: 132 ELACNESNEEILDRLRPVDIDDRRKFAFRIKEHMDGLGLPLIETAYTALIKLLSKSRQLG 191
Query: 208 MAFDLVKQMKSFG-IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266
A L+ + + PKLR + P L +C+ G+ A V + G+V E E AL
Sbjct: 192 KAEVLLDEAEGVQQCRPKLRMFAPLLSAYCETGSMIPALRVWQRLHRHGLVLSEKEYVAL 251
Query: 267 LKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDS------------VDAAEIG 314
++ +V K + +L L V S T I WF+S +D + I
Sbjct: 252 IRCAVITKDACVMDRVLSDLAEDVLVPSRETCLAIRAWFESPAAIATNKEGNHIDDSGIR 311
Query: 315 VLNWDVSKVREGIVRGGGGWHGQ--GWLGSGKWRVER-TQIDENGVCCSCNERLVCIDID 371
++ ++ + G G Q GW S V+ T ++G + + + + D
Sbjct: 312 IVLESIAYPQSGQTLSMGPVLTQKSGWTVSESCSVDTDTGALQSGCLNGHSLKPLTVSSD 371
Query: 372 P-RETENFASSLSNLACQREVRSDFN-----------------------KFQEWLGR--- 404
+E N ++ E RS F FQ++L R
Sbjct: 372 TWQEMRNMNETIVTSGKLEEHRSQFQGGRKGKRQKMDDRLLQERQNHWTHFQKYLIRRCT 431
Query: 405 HGPFDAVIDGANVGLVNQHNFS-------FYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
D VIDGAN+G Q NF+ + Q+N +V + S L+++H +
Sbjct: 432 QRKIDLVIDGANIGYYEQ-NFAGAPKHVDYDQINWIVQHFLKQDKS---VLLVMHNRHFT 487
Query: 458 GGPAQIPKN-KKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCK--SLLVTNDEMRDHLF 514
+P++ + L+ W D LY TPPG NDDW+W++A + +L+VTNDEMRDH F
Sbjct: 488 S--QMMPRSFRPLIQSWLDNDVLYRTPPGMNDDWFWMHAALYAGPGTLVVTNDEMRDHHF 545
Query: 515 QLLGTSFFPRWKEKHQIRLSVS----------RDGLNLLMPPPYSIVIQESENG 558
Q+L F RWK++HQ+R S+ + +NL+ P YS IQ +G
Sbjct: 546 QMLARRSFLRWKDRHQVRFSLGAWESFVQGRHQRRVNLIYPEVYSRRIQRVADG 599
>gi|238012854|gb|ACR37462.1| unknown [Zea mays]
gi|414586240|tpg|DAA36811.1| TPA: hypothetical protein ZEAMMB73_657460 [Zea mays]
Length = 77
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 58/77 (75%), Positives = 65/77 (84%)
Query: 509 MRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGD 568
MRDHLFQLLGTSFFPRWKEKHQ+RL+ S G L +PPPYSIVIQESE+GSWHVP TGD
Sbjct: 1 MRDHLFQLLGTSFFPRWKEKHQVRLTFSGHGPTLHLPPPYSIVIQESEDGSWHVPTTTGD 60
Query: 569 DLEAPRQWLCATRARVK 585
D+E PRQWLC TR ++
Sbjct: 61 DIEKPRQWLCTTRKSLR 77
>gi|323456990|gb|EGB12856.1| hypothetical protein AURANDRAFT_60968 [Aureococcus anophagefferens]
Length = 636
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 191/425 (44%), Gaps = 52/425 (12%)
Query: 167 SNLGLKRGF--EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
++ G KR F E+F M ++ EATFT + R+ + P A ++ +MK+ + K
Sbjct: 183 TDSGAKRAFAFELFDDMRAAGMELGEATFTMLVRVCAVDDAPAEAEGVLAKMKARNLKLK 242
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL-------LKLSVDAKKVD 277
LR++ P L C+ G +A V A + G+ E E AL L+ DA +
Sbjct: 243 LRTFSPLLKLRCRRGELAEALAVAAECRDKGIELSEAEHVALVDCRAGRLEAGGDAASLP 302
Query: 278 KVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQ 337
+L L S + + + A +G+ + E V G G
Sbjct: 303 GA-SVLDDLAADCHAPSRAAWPACRRY-----CAALGL----TACAEESAVSGDGACAVT 352
Query: 338 GWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNK 397
G K R E + E LV E ++ A L LA +R + +
Sbjct: 353 G----AKLRSLDLSEAERALLLEQIEGLVPAVDAKFEGQSSAQELERLAGRR--MAQWRT 406
Query: 398 FQEWLGRHG-PFDAVIDGANVGLVNQHNFS-------FYQLNTVVNRLRQMSPSKRMPLV 449
F+ WL + G P+D +IDGANVG + N++ F Q++ V LR+ R LV
Sbjct: 407 FKAWLAKAGAPYDCIIDGANVGY-HGANYAGAPDAVDFRQVDAV---LRKCIDGGRRALV 462
Query: 450 ILHKGRVSGGPAQIPKNKK-LLDIWRDGGALYTTPPGSNDDWYWLYATVNCK--SLLVTN 506
+LH + ++P + + +L WR +LY+ +NDDWYWLYA V SLLV+N
Sbjct: 463 VLHARHLQDD--RLPASARPVLHAWRRSKSLYSCALRNNDDWYWLYAAVAAGPGSLLVSN 520
Query: 507 DEMRDHLFQLLGTSFFPRWKEKHQIRLSVS---RDG---LNLLMPPPYSIVIQESENGS- 559
DEMRDH F +L F WKE+H + + RDG + + PPP+S+ Q ++ G
Sbjct: 521 DEMRDHHFGMLSARAFLVWKERHLAKFELGGWRRDGGRDVTIHDPPPFSVRAQRNDPGEA 580
Query: 560 ---WH 561
WH
Sbjct: 581 LARWH 585
>gi|159471043|ref|XP_001693666.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283169|gb|EDP08920.1| predicted protein [Chlamydomonas reinhardtii]
Length = 523
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/199 (35%), Positives = 111/199 (55%), Gaps = 10/199 (5%)
Query: 345 WRVERT-QIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQR--EVRSDFNKFQEW 401
W+V R+ ++ G C + L ID+ E E+FA+++++LA ++F+ F W
Sbjct: 196 WQVLRSVAVERGGRCDAAGGSLRVIDLAETEWESFANAIASLARTNMGARAAEFDAFAAW 255
Query: 402 LGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
RHGP+D ++D ANV Q+ F++ Q+ + L + PSK++ LV++H+ R+
Sbjct: 256 YDRHGPYDILVDAANVAYYGQNREGGGFTWGQIQAMYELLTRRFPSKKV-LVMVHRNRLK 314
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCK--SLLVTNDEMRDHLFQ 515
A + L R A TPPG+NDDW+WLYA V K LLV+ND +RDH+F
Sbjct: 315 DPEANTSAVQAFLGRLRSCKAFNYTPPGANDDWFWLYACVKAKRRGLLVSNDLLRDHIFS 374
Query: 516 LLGTSFFPRWKEKHQIRLS 534
LL F +WK++H R +
Sbjct: 375 LLRPKHFLKWKQRHIARYT 393
>gi|303287330|ref|XP_003062954.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455590|gb|EEH52893.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 726
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 86/157 (54%), Gaps = 24/157 (15%)
Query: 442 PSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC-- 499
P +P+ LH RV GGPA ++K+++D W+ G L+TTP GSNDDWYWLYA V
Sbjct: 574 PGSAVPVNFLHVRRVKGGPANHHRSKQIVDRWKRAGELFTTPAGSNDDWYWLYAAVASGD 633
Query: 500 KSLLVTNDEMRDHLFQLLGT-SFFPRWKEKHQIRLSVSR-------------DGLNLLMP 545
+ LV+NDEMRDH+FQ+L + F RWKE+HQ R R GL + P
Sbjct: 634 DAFLVSNDEMRDHVFQMLPSPKLFARWKERHQARSYSHRFPYDRCRFHMSSATGLEVYYP 693
Query: 546 PPYSIVIQESENGS-WHVPVITGDDLEAPRQWLCATR 581
P +S QE ++ + W P+ G W CA R
Sbjct: 694 PAFSAQTQEGKDRAWWAFPLDDG-------TWTCAVR 723
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/288 (23%), Positives = 119/288 (41%), Gaps = 32/288 (11%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPA 231
R +F M + E ++T++AR+ A D E AF+L ++S + PKLR++ PA
Sbjct: 208 RAQAVFDHMAKKDIPRTEMSYTALARVRAACGDAEGAFELANTVESEPRLAPKLRTFAPA 267
Query: 232 LFGFCKLGNTDKAYE--VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L F G + H+ P + VD T+
Sbjct: 268 LHAFAIAGEVRAPHARITRCHVYNPASSPRASHHVDHSFVHVDRAFAVDAAVRAAAGGTI 327
Query: 290 VRQVSESTFKII-------EDWFDSVD-----AAEIGVLNWDVSKVREGIVRGGGGWHGQ 337
++ E+ F ++ E W D + A E+ L +S + GW
Sbjct: 328 --EIGEAEFAVVLDALRAKERWDDGLAWLRRCADEVRTLGEGLSAAAAAFFKAAPGWR-- 383
Query: 338 GWLGSGKWRVERTQ------IDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREV 391
+ +G + T +D+ G N +LV +++ + + + + LA +RE
Sbjct: 384 -FCDAGAVETDETTGAIVATVDDVGT--KRNIQLVAMNLSAEDRASLLAGIGKLAREREA 440
Query: 392 RSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVN 435
+F+ F WL R GP ++DGANVG+ NQ+ F+F Q+ V++
Sbjct: 441 GGNFDGFVGWLRRRGPLPFLVDGANVGMYNQNFSESRFNFQQVEKVMD 488
>gi|299116676|emb|CBN74821.1| multidrug resistance pump, putative [Ectocarpus siliculosus]
Length = 1071
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 142/577 (24%), Positives = 224/577 (38%), Gaps = 129/577 (22%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR 163
E L++++ + K E LR ++ A G+ L + +L C+ K G
Sbjct: 241 EKQLQNEVALALKADSAEETLRSFNTAMEMGVALRANLLRGVLNQCA-KAGL-------- 291
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
+ + +M + E T+ + R V+ + AFDL+K M + G+ P
Sbjct: 292 -------MDDCMRVVMEMKERGMVIEENTYVPLIRGMVSHGNCHDAFDLIKDMVNQGVQP 344
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSV-----DAKKVD 277
+LR Y P + C+ G D A EV HM + GV+P EE ++ L LSV D +
Sbjct: 345 RLRCYEPVIAEMCREGGMDAAREVWEHMEQQGVIPREEQYVNYLCGLSVAGELWDNARSG 404
Query: 278 KVYEILHRLRTLVRQVSESTFKIIEDWFDSV------------DAAEIGVLNW------- 318
K+ E L + R ++ + +E+ F++V DA +G N
Sbjct: 405 KLDEKLLEMSYHARNLTMGQVEQLEEHFNAVPLAATPSIPINGDAGAVGDTNAFAITEAV 464
Query: 319 --DVSKVREGIVRGGGGWHGQGWLGSGKWRVER-TQIDENGVCCSCNERLVCIDIDPRET 375
V R V GG W + +W + T+ + C +C L + + E
Sbjct: 465 KSSVPLARRVKVAGGHEIDDDSW--TREWSSRKPTRAERPHSCPACGGALRAVGLTDGER 522
Query: 376 ENFASSLSNLA---CQREVRSDFNKF----QEWLGRHGPF-------------------- 408
+L LA ++ RS K ++ G PF
Sbjct: 523 ARIRETLFGLAGLQVKKHARSRHTKMLARSRQRQGNENPFYSFTDEDQKEQLQIFVDWLH 582
Query: 409 ---------DAVIDGANVGL--VNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
AVID ANV + +FS Q++ +V L PLV++ + +
Sbjct: 583 AQRADGKTYTAVIDSANVAYHKGSAFHFSLPQVDLMVQALEAKG---ERPLVLIAEKYID 639
Query: 458 -------GGPAQ-------IPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSL- 502
PA+ P NK ++ WR LY ++DDWYW+YATV +
Sbjct: 640 RVGDLYDNSPARGGFRYMSNPLNKAIVKRWRAKSQLYECSDEASDDWYWMYATVAFDDIP 699
Query: 503 --LVTNDEMRDHLFQLLGTSFFPRWKEKH--QIRLS-----VSRDGLN-----------L 542
+++ND RDH L T + RW+ Q L+ + GLN
Sbjct: 700 MTVISNDRTRDHRMSLAETVPYLRWRTTQLAQFELTYPLKDIMGKGLNPQGWPANPPQVA 759
Query: 543 LMPPP-YSIVIQESENGSWHVPVITGDDLEAPRQWLC 578
+ PPP ++ +Q+SE G WHVP D +WLC
Sbjct: 760 IQPPPAFTRDVQKSEQGCWHVPAGADD------EWLC 790
>gi|242079533|ref|XP_002444535.1| hypothetical protein SORBIDRAFT_07g023405 [Sorghum bicolor]
gi|241940885|gb|EES14030.1| hypothetical protein SORBIDRAFT_07g023405 [Sorghum bicolor]
Length = 92
Score = 111 bits (278), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/88 (57%), Positives = 68/88 (77%), Gaps = 3/88 (3%)
Query: 401 WLGRHGPFDAVI---DGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
WL HGPFDAVI D ANV L N FSF Q+N+VVN +++++ SK++PL+ILH+ RV+
Sbjct: 2 WLCCHGPFDAVIQLIDVANVDLYNSKAFSFSQVNSVVNAIQRVTKSKKLPLIILHRNRVN 61
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPG 485
GGPA+ P N+K+L+ WR+ GALYTT PG
Sbjct: 62 GGPAKAPYNQKILESWRNAGALYTTAPG 89
>gi|300122576|emb|CBK23145.2| unnamed protein product [Blastocystis hominis]
Length = 264
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 35/258 (13%)
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQR--------------EVRSDFNK 397
I ++G C C +++ I + E AS + + QR E +F +
Sbjct: 6 IVDSGECTHCGKQMQRIILPTAEKLELASEIEQVIQQRSGFDRMKRSKEGDGERMENFRR 65
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHK 453
F+ +L +GPFD IDGAN+ Q+ F++ Q++ + + L+Q L++LH+
Sbjct: 66 FKAFLEANGPFDIFIDGANIAHYKQNFEGGTFNYQQIDMIASYLQQQGYK---VLIVLHE 122
Query: 454 GRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCK--SLLVTNDEMRD 511
+P+ W + Y G+NDDWYW+YA ++ + +++++ND+MRD
Sbjct: 123 HHFDQPTTDLPER------WLEQKLAYKVVKGNNDDWYWMYAALSSRNDAMILSNDKMRD 176
Query: 512 HLFQLLGTSFFPRWKEKHQIRLSVSRD----GLNLLMPPPYSIVIQESENGSWHVPV-IT 566
H FQ+ F W+E QI + D L P ++ IQE+ G +H+P
Sbjct: 177 HFFQIHNDLRFQAWREYSQIYYDIWTDIEKKKFVLTFPKKFTQSIQENLAG-FHIPFGKI 235
Query: 567 GDDLEAPRQWLCATRARV 584
++++ + + C +R+
Sbjct: 236 EENVKQVKHYFCLLDSRL 253
>gi|342185400|emb|CCC94883.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 582
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 130/556 (23%), Positives = 209/556 (37%), Gaps = 113/556 (20%)
Query: 73 FSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARS 132
S ++ V S+ P + K + R +P L+ ++ GDV EA+++ S
Sbjct: 24 LSCRAVVAGSATPVATPLRTGVKWRLRSSAPVEDLQRRVGQLVGMGDVDEAVKVIRAGLS 83
Query: 133 NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192
+ S L++C +R L + ++ + D +E+
Sbjct: 84 RSV-FSMKALANTLFLC------------ERTKREALATELIEQVHMSGLVQSWD-DESV 129
Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
RL D + A + + S +LRS L C + A+ V
Sbjct: 130 LAVALRLRCTAGDAKGAMQIFSYIVSHKFL-RLRSVSAFLHLCCTRRDRQMAFAVYDEAL 188
Query: 253 ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE 312
G+ + AL +L VD V + LHRL + ++ DSV
Sbjct: 189 RQGIELRVEDYHALGRLCVD---VGEPISTLHRL-----------LREMQGHMDSVSETM 234
Query: 313 IGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDEN------GVCCSCNERLV 366
+ E ++R W G RV N G+CC+C+ L
Sbjct: 235 V-----------EEVIRP--------WATRGGLRVVDVTFPNNDTTLSAGMCCNCSRNLS 275
Query: 367 CIDIDPRETENFASSLSNLAC---QREVRSDFNKFQEW---LGRHGP-FDAVIDGANVGL 419
+ + + +A +++ + F+ W + +G D +IDGAN+G
Sbjct: 276 GHRFTAVQKSSLIGDVVKVATSSGRKDSARAWVAFEAWRRFVSAYGSRIDVLIDGANLGY 335
Query: 420 VNQHN-FSFYQLNTVVNRLR--------QMSPSKR------------------------M 446
+ +S + ++ R R ++ SKR
Sbjct: 336 YGLSSWYSIAKRELLMKRGRRAGEIQPQELELSKRGFVDVSVSFELIGLAVNEARRRGLR 395
Query: 447 PLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKS----- 501
PLVILH R +++ L+ WR G LY TP G NDD WLYA + +
Sbjct: 396 PLVILHS-RHCEPKNMTAESEALVAEWRRDGVLYCTPNGLNDDLCWLYAALELTTPTDAA 454
Query: 502 ---------LLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLL---MPPPY 548
++TND MRDH F+LL +F RW+++H+I R DG LL MP PY
Sbjct: 455 AAAGAAKTVWVLTNDLMRDHHFKLLSPRYFVRWRDRHRIAFKCERKDGRTLLHWEMPAPY 514
Query: 549 SIVIQESENGSWHVPV 564
+ IQE + +WH+PV
Sbjct: 515 ARCIQEPSHLNWHIPV 530
>gi|428174047|gb|EKX42945.1| hypothetical protein GUITHDRAFT_110991 [Guillardia theta CCMP2712]
Length = 566
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 119/531 (22%), Positives = 204/531 (38%), Gaps = 104/531 (19%)
Query: 85 PNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNV 144
PN N + + R E R+KL+ C + D +A+ + D + TL Q Y
Sbjct: 100 PNRREKKNANLSEEDRRRNE--FRNKLNCCMRNADFKKAIEIVKDMETENFTLDQQQYAQ 157
Query: 145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA-- 202
+ +C+ G + + G++ D K E+ + +T+ + + + + +
Sbjct: 158 MFNLCAS-SGEDDWKEGEKMLD-----KLNREMRESKLTETSNDEKNLASGIVKFCSCTG 211
Query: 203 --KEDPEMAFDLVKQMKSFGIPPKLRSYG-----PALFGFCKLGNTDKAYEVDAHMGESG 255
KE E +V++ S G+ +R+ A+F K T+ +VD
Sbjct: 212 KHKEALETWTRMVEERVSKGVI-MIRTNATNRDMEAMFDVYKDSQTE---DVDLL----- 262
Query: 256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGV 315
E + ++K V KK +++E+L + L+ + T + ++ F+S+D
Sbjct: 263 ----EEDFLNIIKACVATKKTKRIFEVLEAMMELIYSLQPETLQSLKQVFESMDR----- 313
Query: 316 LNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQI-DENGVCCSCNERLVCIDIDPR- 373
R + T I D G C C + L+ +D+
Sbjct: 314 ------------------------------RCKFTHINDPKGFCPECKKNLISLDLTKDM 343
Query: 374 ----------ETENFASSLSNLACQREVRSD-FNKFQEWLGRHGPFDAVIDGANVGLVN- 421
E +++LA + +S F+ F+ WL R D +IDGANVG +
Sbjct: 344 LLALISWFQDELSQLCDQINSLARVGDAQSAAFDAFKSWLNRSSLPDVIIDGANVGYYSL 403
Query: 422 ----QHNFSFYQLNTVVN--RLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRD 475
S+ Q++ +V + R+M P M HK + P + ++L+ +
Sbjct: 404 RPDQGEKLSYMQVDKIVQWFKERKMKPLLVMHSRHFHKDALKDKPQEASVVQRLVQMLMG 463
Query: 476 GGALYTTPPGSNDDWYWLYATVNC-----KSLLVTNDEMRDHLFQLLGTSFFP-RWKEKH 529
NDDW+WLYA C K +V+ND+MRDH FQ + + E+H
Sbjct: 464 ARMEEAMEEAMNDDWFWLYAGAWCSKQKGKVFIVSNDQMRDHHFQASSLHWVNFHFDERH 523
Query: 530 QIRLSVSRDGLNLLMPPPYSIVIQ--ESENGSWHVPVITGDDLEAPRQWLC 578
V L P YS +Q + + WH P T WLC
Sbjct: 524 GASDPV------LAFPSDYSYRMQPRQDDQAMWHFPSATKQS-----DWLC 563
>gi|261334222|emb|CBH17216.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 571
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 114/270 (42%), Gaps = 61/270 (22%)
Query: 356 GVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHG-PF 408
G CCSC+ L + S + +A R F ++ ++ HG
Sbjct: 245 GTCCSCSRVLSGHRFTALQKRKLLSDVVQIAMDGGRKNSPRARMAFETWRRFISSHGHSI 304
Query: 409 DAVIDGANVGLVNQHN-FSFYQLNTVVNRLRQMSP--------SKR-------------- 445
D ++DGAN+G + ++ + ++ R R+ S SKR
Sbjct: 305 DVLVDGANLGYYGLSSWYALAKRELLLRRGRKESDIGPQDVAWSKRRFVDVSVNFELIEL 364
Query: 446 ----------MPLVILHKGRVSGGPAQIPK-NKKLLDIWRDGGALYTTPPGSNDDWYWLY 494
PLV+LH+ P + K L+ WR G LY TP G NDD WLY
Sbjct: 365 AVQEAYRRGMQPLVLLHERHCE--PNNVTDVGKALVSRWRREGVLYCTPSGLNDDLCWLY 422
Query: 495 ATVNCKS--------------LLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DG 539
A + + L++TND MRDH F+LL F RW+++H+I SR D
Sbjct: 423 AALELTTPTDAVPREEKGKTVLVLTNDLMRDHHFRLLSPRHFSRWRDRHRIAFKCSRVDD 482
Query: 540 LNLL---MPPPYSIVIQESENGSWHVPVIT 566
LL MP PY+ IQE +WH+P+ T
Sbjct: 483 RTLLHWEMPAPYAQCIQELSPLTWHIPIST 512
>gi|71754937|ref|XP_828383.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833769|gb|EAN79271.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 571
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 114/270 (42%), Gaps = 61/270 (22%)
Query: 356 GVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHG-PF 408
G CCSC+ L + S + +A R F ++ ++ HG
Sbjct: 245 GTCCSCSSVLSGHRFTALQKSKLLSDVVQIAMDGGRKNSPRARMAFETWRRFISSHGHSI 304
Query: 409 DAVIDGANVGLVNQHN-FSFYQLNTVVNRLRQMSP--------SKR-------------- 445
D ++DGAN+G + ++ + ++ R R+ S SKR
Sbjct: 305 DVLVDGANLGYYGLSSWYALAKRELLLRRGRKESDIAPQDVAWSKRRFVDVSVNFELIEL 364
Query: 446 ----------MPLVILHKGRVSGGPAQIPK-NKKLLDIWRDGGALYTTPPGSNDDWYWLY 494
PLV+LH+ P + K L+ WR G LY TP G NDD WLY
Sbjct: 365 AVQEAYRRGMQPLVLLHERHCE--PNNVTDVGKALVSRWRREGVLYCTPSGLNDDLCWLY 422
Query: 495 ATVNCKS--------------LLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DG 539
A + + L++TND MRDH F+LL F RW+++H+I SR D
Sbjct: 423 AALELTTPTDAVPREEKGKTVLVLTNDLMRDHHFRLLSPRHFSRWRDRHRIAFKCSRVDD 482
Query: 540 LNLL---MPPPYSIVIQESENGSWHVPVIT 566
LL MP PY+ IQE +WH+P+ T
Sbjct: 483 RTLLHWEMPAPYAQCIQELSPLTWHIPIST 512
>gi|397615121|gb|EJK63235.1| hypothetical protein THAOC_16122 [Thalassiosira oceanica]
Length = 703
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 103/201 (51%), Gaps = 35/201 (17%)
Query: 395 FNKFQEWLGRHGPFDAVIDGANVGLVNQH------NFSFYQLNTVVNRLRQMSPSKRMPL 448
+ +F+ ++ RH P+ AV+DGANVG +++ + + Q++ ++ + + P + + +
Sbjct: 473 WQRFETFIERHPPYGAVVDGANVGYFDKNFHGSPKHVDYRQIDWLLRHMLEQEPHRHV-I 531
Query: 449 VILHKGRVSGGPA---QIPKNKKLLDIWRDGGA------LYTTPPGSNDDWYWLYATV-- 497
+ LH+ S A P ++D W A +Y TP G NDDWYW++A +
Sbjct: 532 MFLHERHFSSKLAPGWAFP----IIDAWDSDRAPYSHLTVYRTPAGMNDDWYWMHAALIN 587
Query: 498 ----NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQI-------RLSVSRDGLNLLMPP 546
+ + L VTNDEMRDH FQ+L F RWKE+HQI R + R + L P
Sbjct: 588 GGKADKQVLAVTNDEMRDHHFQMLAHGSFLRWKERHQIHFDFGPYRKQLGRQEVILDYPS 647
Query: 547 PYSIVIQE--SENGSWHVPVI 565
YS IQ S++G VI
Sbjct: 648 LYSRRIQRIMSDDGEGDAIVI 668
>gi|407408493|gb|EKF31914.1| hypothetical protein MOQ_004244 [Trypanosoma cruzi marinkellei]
Length = 612
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 109/447 (24%), Positives = 169/447 (37%), Gaps = 102/447 (22%)
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL---RSYGPALFGFCKLGNTDKAY 245
+E+ + RL A D A QM SF + KL RS L +C G+ A+
Sbjct: 155 DESVLAVILRLQCAVGDVPAA----TQMFSFMVSKKLLRLRSVSVFLAFWCGRGDRRMAF 210
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDA-KKVDKVYEILHRLRTLVRQVSESTFK-IIED 303
V G+ + L +L V + V ++ +L ++ V V E+ +I
Sbjct: 211 AVYEEALRQGIELRAADYVELGRLCVAVGEPVSTLHFMLREMQEHVLTVPEAMVTDVIRP 270
Query: 304 WFDS--VDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSC 361
W ++ + AE+ + D ++ E G C C
Sbjct: 271 WAEAAGLRMAEVQFPHDDATR-------------------------------EPGTCSFC 299
Query: 362 NERLVCIDIDPRETENFASSLSNLACQ------REVRSDFNKFQEWLGRHGP-FDAVIDG 414
L + E S + N+ V+ F ++ ++ HG D +IDG
Sbjct: 300 EGVLKGHRFTAAQKERLLSDVMNVVMMAPRGNPTRVKVAFEAWRRFISTHGQRIDVLIDG 359
Query: 415 ANVGLV-------------------------------NQHNFSFYQLNTVVNRLRQMSPS 443
AN+G +H +N + L
Sbjct: 360 ANLGYYGLSSWYEGAKRALLLARGKRAEEIKPKDVTWTKHGAVDVTVNFHLIDLAVQEAQ 419
Query: 444 KR--MPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKS 501
+R PL++LH+ R + + + WR G +Y TP G NDD WLYA + +
Sbjct: 420 RRGMQPLILLHE-RHCESKNMTEEKRPIFAKWRREGIIYCTPSGLNDDLCWLYAALELTT 478
Query: 502 L---------------LVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLL-- 543
++TND MRDH F+LL FF RW+++H+I SR DG LL
Sbjct: 479 PTDTTTAGSPVEKTVWVLTNDLMRDHHFKLLSPRFFARWRDRHRISFKCSREDGRTLLHW 538
Query: 544 -MPPPYSIVIQESENGSWHVPVITGDD 569
MP PY+ IQE + +WH+PV +D
Sbjct: 539 VMPEPYAQCIQELKPLTWHIPVTPQED 565
>gi|71664466|ref|XP_819213.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884505|gb|EAN97362.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 560
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 115/459 (25%), Positives = 167/459 (36%), Gaps = 110/459 (23%)
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL---RSYGPALFGFC 236
QM+ D E+ + RL A D A QM SF + KL RS L +C
Sbjct: 96 QMVESWTD--ESVLAVILRLQCAVGDVPAA----TQMFSFMVSKKLLRLRSVSVFLAFWC 149
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
G+ A+ V G+ E L +L V V E + L ++R++ E
Sbjct: 150 GRGDRCMAFAVYEEALRQGIELRAAEYVELGRLCV------AVREPVSTLHFMLREMQEH 203
Query: 297 TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQID--- 353
+ E V W + R+ Q
Sbjct: 204 VLTVPEAMVTDVICP---------------------------WTQAAGLRMAEVQFPHDD 236
Query: 354 ---ENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ------REVRSDFNKFQEWLGR 404
E G C C L + E S + N+ V+ F ++ ++
Sbjct: 237 TTREPGTCSFCGCVLRGHRFTAAQKERLLSDVMNVVMMAPRGNPTRVKVAFEAWRRFIST 296
Query: 405 HGPF-DAVIDGANVGLVN-------------------------------QHNFSFYQLNT 432
HG D +IDGAN+G +H +N
Sbjct: 297 HGQLIDVLIDGANLGYYGLSSWYEEAKRALLLARGKRAEEIKPKDVTWMKHGAVDVTVNF 356
Query: 433 VVNRLRQMSPSKR--MPLVILHKGRVSGGPAQIPKNKKLLDI-WRDGGALYTTPPGSNDD 489
+ L +R PL++LH+ P + + KK++ WR G LY TP G NDD
Sbjct: 357 HLIDLAVQEAQRRGMQPLILLHERHCE--PKNMTEEKKVIVAKWRREGILYCTPSGLNDD 414
Query: 490 WYWLYATVNCKS---------------LLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLS 534
WLYA + + ++TND MRDH F+LL FF RW+++H+I
Sbjct: 415 LCWLYAALELTTPTDATAAGSLVEKTVWVLTNDLMRDHHFKLLSPRFFARWRDRHRIAFK 474
Query: 535 VSR-DGLNLL---MPPPYSIVIQESENGSWHVPVITGDD 569
SR DG LL MP Y+ IQE + +WH+PV +D
Sbjct: 475 CSREDGRTLLHWVMPESYAQCIQELKPLTWHIPVTPQED 513
>gi|71410506|ref|XP_807544.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70871569|gb|EAN85693.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 560
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 89/186 (47%), Gaps = 38/186 (20%)
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
+HGP D + NF L + R M P L++LH+ P +
Sbjct: 346 KHGPVDVTV-----------NFHLIDLAVQEAQRRGMRP-----LILLHERHCE--PKNM 387
Query: 464 PKNKKLLDI-WRDGGALYTTPPGSNDDWYWLYA---------TVNCKSLL------VTND 507
+ KK++ WR G LY TP G NDD WLYA T SL+ +TND
Sbjct: 388 TEEKKVIVAKWRREGILYCTPSGLNDDLCWLYAALELTTPTDTTAAGSLVEKTVWVLTND 447
Query: 508 EMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLL---MPPPYSIVIQESENGSWHVP 563
MRDH F+LL FF RW+++H+I SR DG LL MP Y+ IQE + +WH+P
Sbjct: 448 LMRDHHFKLLSPRFFARWRDRHRIAFKCSREDGRTLLHWVMPESYAQCIQELKPLTWHIP 507
Query: 564 VITGDD 569
V +D
Sbjct: 508 VTPQED 513
>gi|407847726|gb|EKG03344.1| hypothetical protein TCSYLVIO_005615 [Trypanosoma cruzi]
Length = 614
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 88/186 (47%), Gaps = 38/186 (20%)
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
+HGP D + NF L + R M P L++LH+ P +
Sbjct: 400 KHGPVDVTV-----------NFHLIDLAVQEAQRRGMRP-----LILLHERHCE--PKNM 441
Query: 464 PKNKKLL-DIWRDGGALYTTPPGSNDDWYWLYATVNCKS---------------LLVTND 507
+ KK++ WR G LY TP G NDD WLYA + + ++TND
Sbjct: 442 TEEKKVIVATWRREGILYCTPSGLNDDLCWLYAALELTTPTDTTAAGSLVEKTVWVLTND 501
Query: 508 EMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-DGLNLL---MPPPYSIVIQESENGSWHVP 563
MRDH F+LL FF RW+++H+I SR DG LL MP Y+ IQE + +WH+P
Sbjct: 502 LMRDHHFKLLSPRFFARWRDRHRIAFKCSREDGRTLLHWVMPESYAQCIQELKPLTWHIP 561
Query: 564 VITGDD 569
V +D
Sbjct: 562 VTPQED 567
>gi|323450637|gb|EGB06517.1| hypothetical protein AURANDRAFT_71973 [Aureococcus anophagefferens]
Length = 939
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 128/508 (25%), Positives = 196/508 (38%), Gaps = 109/508 (21%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+ D L Y +ARS L+ H YN +L+V + + NG+
Sbjct: 474 KKNDHQRTLSTYAEARSARARLNVHCYNGILHVLA-----DRGLNGE------------- 515
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++V NEA++T++AR VA + A D+V + PKLR+Y P +
Sbjct: 516 --------NRVGVNEASYTALARSHVAAGALDDALDVVA-TRLEDASPKLRTYAPLVAAL 566
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRLRTLVRQVS 294
C A V A M GV P + ALL+ L+ + R ++
Sbjct: 567 CAADRVRDARTVWAAMAAGGVAPTDELYVALLEALARSGDAAGCAACLRERAAADDAGLA 626
Query: 295 ESTFKIIEDWFDSVDAA--EIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQI 352
+ + S+ A E ++ D + G GG G+ ER Q
Sbjct: 627 AAHLTRVSAALRSLPDATCEATTVDDDGTCRVSGRTLPTGGLDGR----------ERAQF 676
Query: 353 DENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG-PFDAV 411
ERL+ ++N +R+ R + F WL H F AV
Sbjct: 677 ---------RERLL--------------DVANATSERD-RRELAAFGAWLEDHPYAFTAV 712
Query: 412 IDGANVGLVNQH----NFSFYQLNTVVNRLRQMS-------PSKRMPLVILHKGR----- 455
+DG NV +NQ+ F QL V L P+K V+ + +
Sbjct: 713 LDGPNVAYLNQNFEHGKFRVRQLQAVAGHLEAAGHVVLVVLPAKYCEAVVPNHSKRRPRA 772
Query: 456 -----VSGGPAQIPKNKKLLDI--WRDGGALYTTPPGSNDDWYWLYATVN-CKSLLVTND 507
G P Q ++ +L I W + GALY P G +DD YW+ ATV+ + L V+ND
Sbjct: 773 AARDEPGGTPLQELEDSELAAIKAWAERGALYVVPRGCHDDLYWMLATVSRDQPLAVSND 832
Query: 508 EMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-----------DGLNLLMPPPYSIVIQESE 556
+ RDH +L+G + + RW + + + + L +P Y+ I E+
Sbjct: 833 KTRDHWPKLIGEAQYRRWATRSVVNFGLGYAEPDDAGDEPPPDVRLDLPKAYAARIHEAR 892
Query: 557 ----NGSWHVPVITGDDLEAPRQWLCAT 580
S+HVP D + WL AT
Sbjct: 893 LPGGRVSFHVP-----DRDDGGAWLLAT 915
>gi|154345319|ref|XP_001568601.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065938|emb|CAM43720.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 581
Score = 94.7 bits (234), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 118/282 (41%), Gaps = 68/282 (24%)
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSL------------SNLACQREVRSD----- 394
+ E GVC C +L D+ P + L S EV D
Sbjct: 270 VSEEGVCSHCGAQLQSFDLSPEDRAALVHDLVEKLVKPRLQGFSRYEPDTEVSEDIIGQR 329
Query: 395 FNKFQEW--LGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK-------- 444
+ +F+E+ +D VIDGANVG ++ + + + R R + PS
Sbjct: 330 WREFEEFKAAAETMSYDTVIDGANVGYYGLSSW-YAEAKDSLLRSRGVDPSSVPSSERFN 388
Query: 445 -------------------------RMPLVILHKGRVSGGPAQI-PKNKKLLDIWRDGGA 478
+ +++LH + AQ+ P+N WRD A
Sbjct: 389 VPFPVDVAPKFSLIEDMRIAAERNGKKTVIVLHNRHL----AQLTPENATYAQRWRDMSA 444
Query: 479 LYTTPPGSNDDWYWLYATVNCK-SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRL---- 533
L +PP NDD+ WLYA + + S +++ND+MRDH F++L FF RW+++H+I
Sbjct: 445 LLPSPPFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFRVLQPRFFLRWRQRHRITYKAFY 504
Query: 534 --SVSRDGLNLLMPPPYSIVIQESENGS---WHVPVITGDDL 570
+ L + +P YS+ +Q S WHVP I+ D+
Sbjct: 505 NRTARATSLRIYLPRAYSVWVQACGAASQYHWHVPYISDIDV 546
>gi|261331446|emb|CBH14440.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 566
Score = 93.2 bits (230), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 124/288 (43%), Gaps = 72/288 (25%)
Query: 348 ERTQI-DENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRS------------- 393
E T++ DE G+CC C+ R+ D P + + V S
Sbjct: 252 ELTEVNDETGMCCRCSTRVHTFDFAPDDRVTLLRDIETKLIAPRVESGSHYEPGKVVEPT 311
Query: 394 -------DFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPS--- 443
+F F++ L R +DAVIDGANVG N+ + + R R + PS
Sbjct: 312 ERKERWEEFAVFKDTLSRLD-YDAVIDGANVGYYGLSNW-YRGAKEALLRSRGVDPSTLP 369
Query: 444 ------------------------------KRMPLVILHKGRVSGGPAQIPKNKKLLDIW 473
++ +V+LH V P++ +N L+ W
Sbjct: 370 EYELCEIPLPVDVPPKFSLIDEMLTEAQKLRKKSVVMLHSRHVRS-PSK--ENLVWLEKW 426
Query: 474 RDGGALYTTPPGSNDDWYWLYATV---NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ 530
R +L P NDD+ WL+A + NC L+V+ND+MRDH F LL F RW+++H
Sbjct: 427 RQESSLIVCPGFLNDDYCWLFAAIHRPNC--LVVSNDQMRDHHFSLLSRRSFLRWRQRHL 484
Query: 531 I----RLSVSRDGLNLL--MPPPYSIVIQESE--NGSWHVPVITGDDL 570
+ R S + ++LL +P PY++ +Q + WHVPV T D+
Sbjct: 485 VTYRARFSWATGAVSLLLSLPRPYAVWVQRGQLSPSHWHVPVRTTLDV 532
>gi|389595359|ref|XP_003722902.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|323364130|emb|CBZ13137.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 584
Score = 92.8 bits (229), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 122/284 (42%), Gaps = 72/284 (25%)
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSLSNLA----------CQR-----EVRSD-- 394
+ ++GVC +C +L D+ P EN A + +L C R EV D
Sbjct: 273 VSDDGVCSNCGAQLQSFDLSP---ENRAVLVHDLVEKLVKPRLQGCSRYEPDTEVSEDTV 329
Query: 395 ---FNKFQEWLGRHG--PFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK----- 444
+ +F+E+ +D VIDGANVG +++ + + + R R + PS
Sbjct: 330 CQRWREFEEFKAAAAKMSYDTVIDGANVGYYGLNSW-YTEAKDALLRSRGIDPSSVPSAD 388
Query: 445 ----------------------------RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDG 476
+ +++LH ++ P+N WR+
Sbjct: 389 RFSVPFPVDVAPKFSLIEDMRTAAERRGKKAVIVLHNRHLAQ---PTPENATYAARWRNM 445
Query: 477 GALYTTPPGSNDDWYWLYATVNCK-SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRL-- 533
GAL +P NDD+ WLYA + + S +++ND+MRDH F +L FF RW+++H+I
Sbjct: 446 GALLPSPAFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYKA 505
Query: 534 ----SVSRDGLNLLMPPPYSIVIQESENGS---WHVPVITGDDL 570
S L + +P YS+ +Q S WH+P I D+
Sbjct: 506 LYNKSARAATLRIHLPRAYSVWVQACGAASQRHWHIPYIASIDV 549
>gi|345306253|ref|XP_001512026.2| PREDICTED: mitochondrial ribonuclease P protein 3-like
[Ornithorhynchus anatinus]
Length = 574
Score = 92.4 bits (228), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 113/506 (22%), Positives = 204/506 (40%), Gaps = 112/506 (22%)
Query: 98 ARRESPE---GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG 154
A+R S + +L + L +C + E + LY ++ L Y +L+ S
Sbjct: 152 AKRNSSDLGYNLLINYLTLCVYQKQTAEIIDLYKILKAKYRCLESGAYTLLIRGLS---- 207
Query: 155 SESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
+ D +S L L++ +I + P++ + + A+ ++ ++A+DL +
Sbjct: 208 -----HSDHWRESLLLLEKVKKI--------ITPSKTNYGDCIQGALLHQEMDLAWDLYQ 254
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+M + + P ++ F K N D+ LK
Sbjct: 255 EMLGYALTPTWNTFQ-LFFDTAKGVNDDQ-----------------------LK------ 284
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGW 334
+K+ +IL LR ES + ++ WF+S+ G W
Sbjct: 285 --NKLLDILLYLRDHQMYPEESFVQSVKAWFESI---------------------PGERW 321
Query: 335 HGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ------ 388
GQ T + ++G C +C + L + + P E + + +
Sbjct: 322 KGQF-----------TTVQKSGQCSACGKNLESLHLSPEEYDFLKEKIMKDVIEGSDQFR 370
Query: 389 REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPL 448
+ + K++ ++ RH PFD VIDG NV + Q T++N + Q++ K + L
Sbjct: 371 KTSPEELEKYKNFVKRHPPFDIVIDGLNVANMKS---KVRQSLTLLNMVTQLA-QKNLRL 426
Query: 449 VILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLV 504
++L + + G A K++ ++ + A + T S DD + LYAT+ +CK V
Sbjct: 427 LVLGRKHMLYGTANWRKHE--MEAVQKNAACFFTENTSEDDPFLLYATLHSGNHCK--FV 482
Query: 505 TNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGS 559
T D +RDH L L F RW+ HQ+ S G ++ P Y ++Q + + S
Sbjct: 483 TQDLLRDHKACLPDALTRRLFFRWQRGHQLGFSSYSAGNRIVFQPVLSYDTLVQTTGD-S 541
Query: 560 WHVP----VITGDDLEAPRQWLCATR 581
WH+P ++ E P +WLC R
Sbjct: 542 WHIPYDENLVERYSYEVPTKWLCLCR 567
>gi|71745204|ref|XP_827232.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70831397|gb|EAN76902.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 566
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 129/288 (44%), Gaps = 72/288 (25%)
Query: 348 ERTQI-DENGVCCSCNERLVCIDIDPR---------ETENFASSLSN-----------LA 386
E T++ DE G+CC C+ R+ D P ET+ A + + L
Sbjct: 252 ELTEVNDETGMCCRCSTRVHTFDFAPDDRVTLLRDIETKLIAPRVESGSHYEPGKVVELT 311
Query: 387 CQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPS--- 443
++E +F F++ L R +DAVIDGANVG N+ + + R R + PS
Sbjct: 312 ERKERWEEFAVFKDTLSRLD-YDAVIDGANVGYYGLSNW-YRGAKEALLRSRGVDPSTLP 369
Query: 444 ------------------------------KRMPLVILHKGRVSGGPAQIPKNKKLLDIW 473
++ +V+LH V P++ +N L+ W
Sbjct: 370 EYELCEIPLPVDVPPKFSLIDEMLTEAQKLRKKSVVMLHSRHVRS-PSK--ENLVWLEKW 426
Query: 474 RDGGALYTTPPGSNDDWYWLYATV---NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ 530
+L P NDD+ WL+A + NC L+V+ND+MRDH F LL F RW+++H
Sbjct: 427 GQESSLIVCPGFLNDDYCWLFAAIHRPNC--LVVSNDQMRDHHFSLLSRRSFLRWRQRHL 484
Query: 531 I----RLSVSRDGLNLL--MPPPYSIVIQESE--NGSWHVPVITGDDL 570
+ R S + ++LL +P PY++ +Q + WHVPV T D+
Sbjct: 485 VTYRARFSWATGAVSLLLSLPRPYAVWVQRGQLSPSHWHVPVRTTLDV 532
>gi|224011972|ref|XP_002294639.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969659|gb|EED87999.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 845
Score = 92.0 bits (227), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 43/204 (21%)
Query: 395 FNKFQEWLGRHGPFDAVIDGANVGLVNQH------NFSFYQLNTVVNRLRQMSPSKRMPL 448
+ KF+ ++ RH FD VIDGANVG Q+ + + Q++ ++ + + + + +
Sbjct: 618 WKKFEGFIERHPSFDVVIDGANVGYYQQNFGNAPKHVDYKQIDGLLRHVLEGNSHEHHVI 677
Query: 449 VILHKGRVSGGPAQIPKNKKLLDIW-----RDGGA---------LYTTPPGSNDDWYWLY 494
+ LH+ + ++L+ W RD + +Y TP G +DDWYW++
Sbjct: 678 LFLHERHFA---------ERLVPSWAWPIIRDWDSDKSPYNRLTVYRTPVGMDDDWYWMH 728
Query: 495 ATVNCKS-------LLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLS-------VSRDGL 540
A + L ++NDEMRDH FQ+L F RWKE+HQ+R + R +
Sbjct: 729 AALMNGGKKDAPPVLTISNDEMRDHHFQMLAHGSFLRWKERHQVRFDFGHWNNRIGRRDV 788
Query: 541 NLLMPPPYSIVIQESENGSWHVPV 564
L P YS IQ + G+ +P+
Sbjct: 789 LLEYPSSYSRRIQRLDGGAIAIPL 812
>gi|428169526|gb|EKX38459.1| hypothetical protein GUITHDRAFT_115425 [Guillardia theta CCMP2712]
Length = 270
Score = 91.7 bits (226), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 102/224 (45%), Gaps = 39/224 (17%)
Query: 382 LSNLACQREVRSDFNKFQEWLGRHGP-FDAVIDGANVGLVNQHN----FSFYQLNTVVNR 436
+ N+ + R F +W+ F V+DG NV Q+ FS++Q++ VVN+
Sbjct: 1 MMNVEQGSQARESILNFLDWMRETSQQFSVVVDGPNVAYSKQNFETGCFSYHQIDIVVNK 60
Query: 437 LRQ-------MSPSKRMPLVI----LHKGRVSGGPAQ---IPKNKKLLDIWRDGGALYTT 482
LR+ + P K + +I H+G ++ AQ +++D W G L +
Sbjct: 61 LREEGEKVLVLLPYKYVQPIIPNHARHQGHLNFSTAQHVVTGDEMEIIDRWNAEGCLKIS 120
Query: 483 PPGSNDDWYWLYATVNCKS---LLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR-- 537
P GSNDDWYW+ +TV + +VTND+MRDH LL F RWK IR S
Sbjct: 121 PHGSNDDWYWMLSTVIDEGETVRVVTNDQMRDHRLALLDPRPFLRWKTTRIIRFDFSHAW 180
Query: 538 ------------DGLNLLMPPPYSIVIQES---ENGSWHVPVIT 566
+ L+ PP S IQ S E+ WH P+ T
Sbjct: 181 EPEKIANGTSDIPQVTLIQPPVISPEIQRSSDEEHMIWHFPIRT 224
>gi|407408445|gb|EKF31883.1| hypothetical protein MOQ_004281 [Trypanosoma cruzi marinkellei]
Length = 571
Score = 90.9 bits (224), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 100/220 (45%), Gaps = 49/220 (22%)
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGL-------------------VNQHNFSFYQL---- 430
+F F+E L + +DAVIDGANVG V+ YQL
Sbjct: 319 EFEAFKETLA-NCDYDAVIDGANVGYYGLSSWYREAKEACLRARGVDPATVPEYQLCEVP 377
Query: 431 ---------NTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYT 481
+ + L Q R PLV+LHK V P++ ++ + L W+ AL
Sbjct: 378 LPVDVPPKFSLIDEMLAQTRCIGRKPLVMLHKRHVES-PSK--ESSEWLLKWKADSALIA 434
Query: 482 TPPGSNDDWYWLYATV---NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQI------R 532
P NDD+ WLYA + NC L V+ND MRDH F LL F RW+++H++ +
Sbjct: 435 CPGFMNDDYCWLYAAICKPNC--LFVSNDLMRDHHFMLLSRRSFLRWRQRHRVTYKALFQ 492
Query: 533 LSVSRDGLNLLMPPPYSIVIQES--ENGSWHVPVITGDDL 570
+ L L MP P+S+ +Q WHVPV+ D+
Sbjct: 493 RATGNATLLLAMPRPFSVWVQRGLLSRTHWHVPVLLSADI 532
>gi|507273|gb|AAA29271.1| ORFA [Leishmania infantum]
Length = 584
Score = 89.4 bits (220), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 72/284 (25%)
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSL----------------------SNLACQR 389
+ ++GVC +C +L D+ + L + CQR
Sbjct: 273 VTDDGVCSNCGAQLQSFDLSAEDRAVLVHDLVEKLVKPRLQGSSRYEPDTEVSEDTVCQR 332
Query: 390 EVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK----- 444
+F +F+ + +D VIDGANVG +++ + + + R R + PS
Sbjct: 333 W--REFEEFKAAAAKMS-YDTVIDGANVGYYGLNSW-YTEAKDALLRSRGIDPSSVPSAD 388
Query: 445 ----------------------------RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDG 476
+ +++LH ++ P+N WRD
Sbjct: 389 RFSVPFPVDVAPKFSLIEDMRTAAERSGKKAVIVLHNRHLAH---PTPENATYAARWRDM 445
Query: 477 GALYTTPPGSNDDWYWLYATVNCK-SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRL-- 533
GAL +P NDD+ WLYA + + S +++ND+MRDH F +L FF RW+++H+I
Sbjct: 446 GALLPSPAFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYKA 505
Query: 534 ---SVSRDG-LNLLMPPPYSIVIQESENGS---WHVPVITGDDL 570
++R L + +P YS+ +Q S WHVP I D+
Sbjct: 506 LYNKIARVATLRIHLPRVYSVWVQACGVASQRHWHVPYIASIDV 549
>gi|507272|gb|AAA29270.1| ORF13 [Leishmania infantum]
Length = 858
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 118/284 (41%), Gaps = 72/284 (25%)
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSL----------------------SNLACQR 389
+ ++GVC +C +L D+ + L + CQR
Sbjct: 547 VTDDGVCSNCGAQLQSFDLSAEDRAVLVHDLVEKLVKPRLQGSSRYEPDTEVSEDTVCQR 606
Query: 390 EVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK----- 444
+F +F+ + +D VIDGANVG +++ + + + R R + PS
Sbjct: 607 W--REFEEFKAAAAKMS-YDTVIDGANVGYYGLNSW-YTEAKDALLRSRGIDPSSVPSAD 662
Query: 445 ----------------------------RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDG 476
+ +++LH ++ P+N WRD
Sbjct: 663 RFSVPFPVDVAPKFSLIEDMRTAAERSGKKAVIVLHNRHLAH---PTPENATYAARWRDM 719
Query: 477 GALYTTPPGSNDDWYWLYATVNCK-SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRL-- 533
GAL +P NDD+ WLYA + + S +++ND+MRDH F +L FF RW+++H+I
Sbjct: 720 GALLPSPAFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYKA 779
Query: 534 ---SVSRDG-LNLLMPPPYSIVIQESENGS---WHVPVITGDDL 570
++R L + +P YS+ +Q S WHVP I D+
Sbjct: 780 LYNKIARVATLRIHLPRVYSVWVQACGVASQRHWHVPYIASIDV 823
>gi|146102307|ref|XP_001469331.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073700|emb|CAM72437.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 584
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 117/284 (41%), Gaps = 72/284 (25%)
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSL----------------------SNLACQR 389
+ ++GVC +C +L D+ + L CQR
Sbjct: 273 VSDDGVCSNCGAQLQSFDLSAEDRAVLVHDLVEKLVKPRLQGSSRYEPDTEVSEETVCQR 332
Query: 390 EVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK----- 444
+F +F+ + +D VIDGANVG +++ + + + R R + PS
Sbjct: 333 W--REFEEFKAAAAKMS-YDTVIDGANVGYYGLNSW-YTEAKDALLRSRGIDPSSVPSAD 388
Query: 445 ----------------------------RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDG 476
+ +++LH ++ P+N WRD
Sbjct: 389 RFSVPFPVDVAPKFSLIEDMRTAAERSGKKAVIVLHNRHLAH---PTPENATYAARWRDM 445
Query: 477 GALYTTPPGSNDDWYWLYATVNCK-SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRL-- 533
GAL +P NDD+ WLYA + + S +++ND+MRDH F +L FF RW+++H+I
Sbjct: 446 GALLPSPAFLNDDYCWLYAVLTRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYKA 505
Query: 534 ---SVSRDG-LNLLMPPPYSIVIQESENGS---WHVPVITGDDL 570
++R L + +P YS+ +Q S WHVP I D+
Sbjct: 506 LYNKIARVATLRIHLPRVYSVWVQACGVASQRHWHVPYIASIDV 549
>gi|219122328|ref|XP_002181499.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406775|gb|EEC46713.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 828
Score = 88.2 bits (217), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 110/239 (46%), Gaps = 57/239 (23%)
Query: 341 GSGKWRVERTQIDEN-GVCCSCNERLVCIDIDPRETENFASSLSNLAC------------ 387
G + R ID++ G C +L + ++P + + F ++ ++A
Sbjct: 521 GEDDFIASRVHIDQSSGHCPVSGVKLRLMSLEPEQAKAFKQNILDMATSEQDRYELKSKQ 580
Query: 388 QREVRSDF--NKFQEWLG-RHG-PFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQ 439
+R RSDF N+F +WL R G PF A++DG N+G Q+ FS++QL VV+ L
Sbjct: 581 KRAQRSDFILNEFMKWLDTRAGDPFTAILDGPNIGYYMQNFEGGRFSYHQLKFVVDSLES 640
Query: 440 MSPSKRMPLVILHKGRVS-------GGPAQIPKNKKLL--DIWRDGGALYTTPPGSNDDW 490
M+ PLVIL + + GG Q K ++L + G +Y PPG DD+
Sbjct: 641 MNEK---PLVILPRKYANDRIHLTIGGVMQTLKKEELQIRNYLIKTGRVYLVPPGHLDDY 697
Query: 491 YWLYATVNCKS------------------------LLVTNDEMRDHLFQLLGTSFFPRW 525
+W+ ++++ ++ +L++ND+MRDH LL F RW
Sbjct: 698 FWMLSSLSTQTTARNGRDLSVLPGDPGGRWPGARPMLISNDQMRDHKLDLLEPKLFRRW 756
>gi|407847678|gb|EKG03306.1| hypothetical protein TCSYLVIO_005652 [Trypanosoma cruzi]
Length = 571
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 47/219 (21%)
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGL-------------------VNQHNFSFYQL---- 430
+F F+E L + +D VIDGANVG V+ YQL
Sbjct: 319 EFEAFKEALT-NCDYDVVIDGANVGYYGLSSWYREAKELCLRARGVDPTTVPEYQLCEVP 377
Query: 431 ---------NTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYT 481
+ + L Q R PLV+LHK V P++ ++ + L W+ AL
Sbjct: 378 LPVDVPPKFSLIDEMLAQTRCVGRKPLVMLHKRHVES-PSK--ESSEWLLKWKADSALIA 434
Query: 482 TPPGSNDDWYWLYATVNCK--SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQI------RL 533
P NDD+ WLYA + CK L V+ND MRDH F LL F RW+++H++ +
Sbjct: 435 CPGFMNDDYCWLYAAI-CKPDCLFVSNDLMRDHHFMLLSRRSFLRWRQRHRVTYKALFQR 493
Query: 534 SVSRDGLNLLMPPPYSIVIQES--ENGSWHVPVITGDDL 570
+ L L MP P+S+ +Q WHVPV+ D+
Sbjct: 494 ATGTATLLLAMPRPFSVWVQRGLLSRTHWHVPVLLSADI 532
>gi|71659584|ref|XP_821513.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886895|gb|EAN99662.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 571
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 99/219 (45%), Gaps = 47/219 (21%)
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGL-------------------VNQHNFSFYQL---- 430
+F F+E L + +D VIDGANVG V+ YQL
Sbjct: 319 EFEAFKETLT-NCDYDVVIDGANVGYYGLSSWYREAKELCLRARGVDPTTVPEYQLCEVP 377
Query: 431 ---------NTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYT 481
+ + L Q R PLV+LHK V P++ ++ + L W+ AL
Sbjct: 378 LPVDVPPKFSLIDEMLAQTRCVGRKPLVMLHKRHVES-PSK--ESSEWLLKWKADSALIA 434
Query: 482 TPPGSNDDWYWLYATVNCK--SLLVTNDEMRDHLFQLLGTSFFPRWKEKHQI------RL 533
P NDD+ WLYA + CK L V+ND MRDH F LL F RW+++H++ +
Sbjct: 435 CPGFMNDDYCWLYAAI-CKPDCLFVSNDLMRDHHFMLLSRRSFLRWRQRHRVTYKALFQR 493
Query: 534 SVSRDGLNLLMPPPYSIVIQES--ENGSWHVPVITGDDL 570
+ L L MP P+S+ +Q WHVPV+ D+
Sbjct: 494 ATGTATLLLAMPRPFSVWVQRGLLSRTHWHVPVLLSADI 532
>gi|432940085|ref|XP_004082710.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Oryzias
latipes]
Length = 616
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 168/401 (41%), Gaps = 71/401 (17%)
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL- 267
A +L+ ++K P R+YG + G+T+ A+ + + E G+ P PE +L
Sbjct: 257 AMNLLDEIKKV-FTPSPRNYGDVISAAMLHGDTNTAWALYDELLEKGLSP-HPETWCVLF 314
Query: 268 -------KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDV 320
+ +A+ ++ IL +R ++ I+ WF+S+ +
Sbjct: 315 TRAEMTEGAAHEAEHHQRLLGILLYMRNNQIYPNKMVANAIKTWFESLSS---------- 364
Query: 321 SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFAS 380
Q W GS W R++ G+C C L I + E +
Sbjct: 365 ----------------QKWTGS--WTSPRSK----GLCGCCGSELESIQLTAEEYQELKE 402
Query: 381 S-LSNLACQREV-----RSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSF-YQLNTV 433
++++ R+V + F+E++ R PFD V+DG NV VN+ + L V
Sbjct: 403 KVIADVIQGRDVFKKTTPEELEHFKEFVRRKPPFDVVVDGLNVANVNRDKTKLSHTLLAV 462
Query: 434 VNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWL 493
V+ L+ L IL GR I ++K + + + + T S DD + L
Sbjct: 463 VSELKHQG------LTILVLGRKHMLRPSISWDRKNMSLIQQKAHCFFTDNISEDDPFLL 516
Query: 494 YATV----NCKSLLVTNDEMRDHLFQLLGTS---FFPRWKEKHQIRLS---VSRDGLNLL 543
YAT+ +C+ V+ D MRDH L + F +W+ HQ+ L + + +
Sbjct: 517 YATLHSGYHCR--FVSRDLMRDHKACLPDGATRRLFFKWQRGHQLVLDGFVAAGNRVKFQ 574
Query: 544 MPPPYSIVIQESENGSWHVPVITGDD---LEAPRQWLCATR 581
P Y ++Q + + SWH+P +D E P++WLC T+
Sbjct: 575 SIPSYDTIVQTTSD-SWHIPYDDTEDRSTYEVPQRWLCLTK 614
>gi|351700058|gb|EHB02977.1| Mitochondrial ribonuclease P protein 3 [Heterocephalus glaber]
Length = 582
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 117/536 (21%), Positives = 206/536 (38%), Gaps = 85/536 (15%)
Query: 70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDD 129
TL +K+ + N+ K+ + S E + ++ + DV ++L +
Sbjct: 106 TLLLERKNIQLPTKPLNSEEWDKLEKEYTGKGSFEKWISAQMSQQNSSVDVVKSLLTWVA 165
Query: 130 ARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP 188
A+++GI Y++L+ Y+ C ++SE D +++ M
Sbjct: 166 AKNSGIV----SYDLLVKYLHLCVFYKQTSEVID--------------VYEIMKARYKSL 207
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
+T + R V + A L++ +K + P +R+Y + G + + A+ +
Sbjct: 208 ESGAYTLLIRGLVQSDKWREALQLLEDIKKV-MTPSVRNYNDCIQGALLHQDVNIAWNLY 266
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+ + P L A D K +K+ +IL LR ES I+ WF
Sbjct: 267 QELLSHKLTPMLETLKAFFDFGKDIKNDHYSNKLLDILLYLRNNQLYPGESFAYSIKTWF 326
Query: 306 DSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERL 365
+S+ G W GQ T I ++G C C +
Sbjct: 327 ESI---------------------PGKQWKGQF-----------TTIQKSGQCSGCGNTI 354
Query: 366 VCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPFDAVIDGANVG- 418
I + P E + + ++ + +F+ ++ H PFD VIDG NV
Sbjct: 355 ESIHLSPEEYDFLKKKVMKDVIDGGDQYRKTTPQELKRFENFVKSHPPFDIVIDGLNVAK 414
Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
+ ++ S + L+ V +Q + + K R ++ K KK +
Sbjct: 415 MFSKARESQFLLDVVSLLAKQKLQLLVLGRKHMLKQRSRWRRDEMEKVKK-------QAS 467
Query: 479 LYTTPPGSNDDWYWLYATVN----CKSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQI 531
+ S DD + LYAT+N CK +TND MRDH LF F +W++ HQ+
Sbjct: 468 CFFADDISQDDLFLLYATLNSGNHCK--FITNDLMRDHKACLFDAKTKHLFFKWQQGHQL 525
Query: 532 RLSVSRDGLNLLMPPP--YSIVIQESENGSWHVP----VITGDDLEAPRQWLCATR 581
+ G ++ Y V+Q + + SWH+P ++ E P +WLC R
Sbjct: 526 AIRSVFPGSHITFHHSLHYDTVVQTTGD-SWHIPYDEDLVERYSYEVPTKWLCLQR 580
>gi|291403736|ref|XP_002717992.1| PREDICTED: hypothetical protein [Oryctolagus cuniculus]
Length = 587
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 113/490 (23%), Positives = 193/490 (39%), Gaps = 87/490 (17%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLK 172
C DV ++L + A++NGI Y VLL Y+ C ++SE D
Sbjct: 152 CHSSVDVAKSLLAWVAAKNNGIV----GYGVLLKYLYLCVIHQQTSEVID---------- 197
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+++ M ++ + R + + A L++ +K IP K ++Y +
Sbjct: 198 ----VYEIMKARYKRLETGGYSLLIRGLIHSDRWREALLLLENIKKVMIPSK-KNYNDCI 252
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTL 289
G + A+ + + + GV P L A D K K+ +IL LR
Sbjct: 253 QGALLHQDVTTAWNLYQELLDQGVSPMLETLQAFFDFGKDVKDDHYSKKLLDILLYLRNN 312
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVER 349
ES I+ WF+SV G W GQ
Sbjct: 313 QLYPGESFAHSIKTWFESVP---------------------GKQWKGQF----------- 340
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLG 403
T I E+G C C + + I + P E E + + ++ + +F+ ++
Sbjct: 341 TTIQESGQCLGCGKAMESIHLSPDEYEFLKTKIMRDVIDGGDQYRKTTPQELQRFENFVK 400
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
PFD VIDG NV + L VV++L + + + L++L + + ++
Sbjct: 401 SRPPFDIVIDGLNVAKMFPKARESQVLLGVVSQLAK----QNLRLLVLGRKHMLTQRSRW 456
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQL 516
K++ ++ R + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 457 TKDE--MEKIRKQASCFFADDISEDDPFLLYATLHSGNHCK--FITKDLMRDHKACLPDA 512
Query: 517 LGTSFFPRWKEKHQI----RLSVSRDGLNLLMPPPYSIVIQESENGSWHVP----VITGD 568
F +W++ HQ+ R S+ ++ Y V+Q + + SWH+P ++
Sbjct: 513 KTQRLFFKWQQGHQLAIMNRFPASKITFQRIL--SYDTVVQTTGD-SWHIPYDEDLVKRY 569
Query: 569 DLEAPRQWLC 578
E P +WLC
Sbjct: 570 SYEVPTKWLC 579
>gi|292623047|ref|XP_683289.3| PREDICTED: mitochondrial ribonuclease P protein 3-like [Danio
rerio]
Length = 578
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 96/397 (24%), Positives = 164/397 (41%), Gaps = 70/397 (17%)
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A +++ MK + P R+YG + G G+++ ++++ + E G+VP + L +
Sbjct: 227 AISMLQDMKK-ALLPSPRNYGDVIAGAVLHGDSETSWKLYDELLELGLVPGQDTWQCLFQ 285
Query: 269 LSVDAK-KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
+ + DK++++L +R + + I+ WF+S
Sbjct: 286 SGITQRGHEDKLFDVLSYMRDNQIYPEKPLMETIKAWFES-------------------- 325
Query: 328 VRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC 387
L KWR + + + +G C +C L I + TE + L +
Sbjct: 326 ------------LPDQKWRGKFSSVTPSGDCRNCKALLESIQL----TEVEYAQLKHNVM 369
Query: 388 QREVRSD--FNK--------FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRL 437
++ + FNK F+ ++ + PFD VIDG NV + H L VV+ L
Sbjct: 370 EKVIEGGDVFNKSNPEELKSFKSFVKQRPPFDIVIDGLNVAKMLPHAAQSETLLAVVSEL 429
Query: 438 RQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV 497
Q S L IL GR +++ + + + + T S DD Y LYA +
Sbjct: 430 EQQS------LNILVLGRKHMLRHSRNWDRQNMSLIKQKAHCFFTEDISEDDPYLLYAAL 483
Query: 498 N----CKSLLVTNDEMRDHLFQLLGTS---FFPRWKEKHQIRLSVSRDGLNLLMPP--PY 548
N CK ++ D MRDH L ++ F +W+ HQ+ +S G + Y
Sbjct: 484 NSGVHCK--FLSRDLMRDHKACLPDSATRCLFFKWQRGHQLVISHYTPGKRVRFERILSY 541
Query: 549 SIVIQESENGSWHVPVITGDD----LEAPRQWLCATR 581
+IQ + SWH+P + E P++WLC TR
Sbjct: 542 DTIIQ-TNGSSWHIPYDQKAEDRASYEVPQKWLCLTR 577
>gi|401430040|ref|XP_003879502.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495752|emb|CBZ31058.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 584
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 114/278 (41%), Gaps = 66/278 (23%)
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSL----------------------SNLACQR 389
+ ++GVC +C L D+ + L ++ CQR
Sbjct: 273 VSDDGVCSNCGAPLQSFDLSAEDRAVLVHDLVEKLVKPRLQGSSRYEPDTEVSEDIVCQR 332
Query: 390 EVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK----- 444
+F +F+ + +D VIDGANVG +++ + + + R R + PS
Sbjct: 333 W--REFEEFKAAAAKMS-YDTVIDGANVGYYGLNSW-YTEAKDALLRSRGIDPSSVPSAD 388
Query: 445 ----RMPLVILHK----------GRVSGGPAQI-----------PKNKKLLDIWRDGGAL 479
P+ + K SG A I P+N WRD AL
Sbjct: 389 RFSVPFPVDVAPKFSLIEDMRTTAERSGKKAVIVLHNRHLEHPTPENATFAARWRDMDAL 448
Query: 480 YTTPPGSNDDWYWLYATV-NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRL----- 533
+P NDD+ WLYA + S +++ND+MRDH F +L FF RW+++H+I
Sbjct: 449 LPSPAFLNDDYCWLYAVLMRQDSCIISNDQMRDHYFTVLQPRFFVRWRQRHRITYRALYN 508
Query: 534 SVSRDG-LNLLMPPPYSIVIQESENGS---WHVPVITG 567
++R L + +P YS+ +Q S WHVP I
Sbjct: 509 KIARVATLRIHLPRAYSVWVQACGAASQRHWHVPYIAS 546
>gi|395838223|ref|XP_003792018.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1
[Otolemur garnettii]
Length = 485
Score = 85.1 bits (209), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 111/486 (22%), Positives = 197/486 (40%), Gaps = 83/486 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NG+ Y++L+ Y+ C ++SE D I
Sbjct: 58 DVAKSLLAWVAAKNNGLV----GYDLLVKYLYLCVFHKQTSEVID--------------I 99
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M + +T + R + A L++ MK IP + ++Y + G
Sbjct: 100 YEIMKARYKNLEPGAYTLLIRGLSHSDRWREALLLLEDMKKVTIPSR-KNYHDCIQGALL 158
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ D A+ + + ++P L A L D K +K+ +IL LR
Sbjct: 159 RQDVDIAWNLYQELLGHNLIPMLETLKAFFDLGKDIKDDYYSNKLQDILLYLRNNQLYPG 218
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV GQ W G E T I +
Sbjct: 219 ESFAHSIKTWFESVP--------------------------GQQWKG------EFTTIRK 246
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C SC + + I++ P E E + ++ + F++++ PF
Sbjct: 247 SGQCSSCGKTIESIELSPEEYEFLTGKIMRDVIDGGDQYKKTTPWELRTFEKFVKSCPPF 306
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + F + + V+ L + + L++L + + ++ K++
Sbjct: 307 DIVIDGLNVAKM----FPKARESQVLLELVSQLAKQNLRLLVLGRKHMLKKSSRWRKDE- 361
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
+++ + + + S DD + LYAT+ +CK VT D MRDH L
Sbjct: 362 -MEMVQKQASCFFADDISKDDPFLLYATLHSGNHCK--FVTKDLMRDHKACLPDAKTQRL 418
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVPV----ITGDDLEAPRQ 575
F +W++ HQ+ + G ++ Y+ V+Q + + SWH+P + E P +
Sbjct: 419 FFKWQQGHQLAIRNKFPGSKMIFQHILSYNTVVQTTGD-SWHIPYDEDRVERYSYEVPTK 477
Query: 576 WLCATR 581
WLC R
Sbjct: 478 WLCLHR 483
>gi|327263624|ref|XP_003216619.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Anolis
carolinensis]
Length = 580
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 96/392 (24%), Positives = 152/392 (38%), Gaps = 64/392 (16%)
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL- 267
A L++++K F IP K +YG + + A + M V P L
Sbjct: 227 ALVLLEEIKKFIIPSK-GNYGDCIKAALANREINTACMLFHEMLAKNVTPNLDVLQFFFD 285
Query: 268 --KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVRE 325
K D +++ IL+ LR E+ + I+ WF+S+
Sbjct: 286 TGKCVNDTDFKNELIYILNYLRNNQVYPGEALMESIKHWFESIPGE-------------- 331
Query: 326 GIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL--- 382
KW+ T + +G C SC + L I++ E + +
Sbjct: 332 ------------------KWKGNLTTVKNSGKCPSCEQFLESINLTEEEYDILKEKIIKD 373
Query: 383 ---SNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQ 439
++ + FQ ++ + PFD VIDG NV V N L VVN L Q
Sbjct: 374 VIHGTDTFRKTTPQELEVFQRFVNQRPPFDIVIDGLNVARVCHKNNPSQTLLDVVNHLVQ 433
Query: 440 MSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV-- 497
+ + L++L + + G Q +N + + + T S DD + LYAT+
Sbjct: 434 ----QNLRLLVLGRKHMLNGSRQWNRNNMV--AMQKKADFFFTDNVSEDDPFLLYATLHS 487
Query: 498 --NCKSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPP--YSI 550
+CK VT D +RDH L L F +W+ HQ+ LS G + P Y
Sbjct: 488 GSHCK--FVTRDLLRDHKACLSDSLTRRLFFKWQRGHQMVLSDYISGKKIKFEPVLNYDT 545
Query: 551 VIQESENGSWHVPV----ITGDDLEAPRQWLC 578
++Q + N +WH+P + E P +WLC
Sbjct: 546 IVQTTGN-TWHIPYDDSNLERSSYEVPIKWLC 576
>gi|26327069|dbj|BAC27278.1| unnamed protein product [Mus musculus]
Length = 584
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/486 (21%), Positives = 189/486 (38%), Gaps = 83/486 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI YN+L+ Y+ C ++SE D +
Sbjct: 153 DVAKSLLAWVAAKNNGIV----GYNLLVKYLYLCVFHKQTSEVID--------------V 194
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M +T + R + + + L++ +K +P K ++YG + G
Sbjct: 195 YEIMKAKYKSLESGGYTLLIRGLIHSDRWRESLLLLEDIKKVMVPSK-KNYGDCIQGALL 253
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A D DK+ +IL LR
Sbjct: 254 HQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKLLDILLYLRNNQLYPG 313
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+S+ + W+ + T I +
Sbjct: 314 ESFAHSIKTWFESIPGRQ--------------------------------WKGQFTTIQK 341
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + I + P E E + ++ + +F+ ++ PF
Sbjct: 342 SGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFESFVNSCPPF 401
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV+++ Q + + L++L + + +Q K +
Sbjct: 402 DIVIDGLNVAKMFPKGRESQNLLGVVSQVAQ----QNLQLLVLGRKHMLRPSSQWRKEE- 456
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATVN----CKSLLVTNDEMRDH---LFQLLGTSF 521
++ R + S DD + LYAT+N CK +T D +RDH L
Sbjct: 457 -MEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCK--FITKDLLRDHKACLPDARTQRL 513
Query: 522 FPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + + L Y V+Q + + SWH+P ++ E P +
Sbjct: 514 FFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDLVQRSSCEVPTK 572
Query: 576 WLCATR 581
WLC R
Sbjct: 573 WLCLQR 578
>gi|15239331|ref|NP_200851.1| antiporter/ drug transporter [Arabidopsis thaliana]
gi|79331594|ref|NP_001032110.1| antiporter/ drug transporter [Arabidopsis thaliana]
gi|9757745|dbj|BAB08226.1| unnamed protein product [Arabidopsis thaliana]
gi|332009946|gb|AED97329.1| antiporter/ drug transporter [Arabidopsis thaliana]
gi|332009947|gb|AED97330.1| antiporter/ drug transporter [Arabidopsis thaliana]
Length = 156
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 78/119 (65%), Gaps = 11/119 (9%)
Query: 323 VREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL 382
+RE +++ GGGWHG GW+G GKW V++ + G C SC+E+L C+D + ET+ F SL
Sbjct: 2 LREAVLKNGGGWHGHGWVGDGKWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSL 61
Query: 383 SNLACQREVRSD-------FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQL 430
LA +R+ + + F++FQ+WL +HG ++A++DGAN+GL Q+ +FS Q+
Sbjct: 62 VALAMERKAKMNSCESDVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQV 120
>gi|110738688|dbj|BAF01269.1| hypothetical protein [Arabidopsis thaliana]
Length = 135
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 78/119 (65%), Gaps = 11/119 (9%)
Query: 323 VREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL 382
+RE +++ GGGWHG GW+G GKW V++ + G C SC+E+L C+D + ET+ F SL
Sbjct: 2 LREAVLKNGGGWHGHGWVGDGKWIVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSL 61
Query: 383 SNLACQREVRSD-------FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQL 430
LA +R+ + + F++FQ+WL +HG ++A++DGAN+GL Q+ +FS Q+
Sbjct: 62 VALAMERKAKMNSCESDVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQV 120
>gi|340056237|emb|CCC50567.1| conserved hypothetical protein, fragment [Trypanosoma vivax Y486]
Length = 562
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 58/275 (21%)
Query: 348 ERTQIDEN-GVCCSCNERLVCIDIDPRETENF---------------------ASSLSNL 385
E T ++++ G+C C L D P + E AS +S++
Sbjct: 252 EATTVNKDKGMCDRCGTALYSFDFSPGDRETLLNDIETKLIEPRLGSPGSCESASKVSSV 311
Query: 386 ACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK- 444
+R V +F KF+E + +DAVIDGANVG ++ + + R + P+K
Sbjct: 312 EIERRV-GEFQKFKELISIL-EYDAVIDGANVGYYGLSSW-YRAAKEALLSSRGVDPTKV 368
Query: 445 ----------------RMPLV--ILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGS 486
+ PL+ +L R + + +++ ++ + +L P
Sbjct: 369 SEHELCEVPVPVDVPPKFPLIDEMLTHARRLRSKSLVMLHRRHRNLLLES-SLVVCPGFL 427
Query: 487 NDDWYWLYATV---NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQI----RLSVSRDG 539
NDD+ WLYA + NC L+V+ND+MRDH F LL F RW+++H++ R +
Sbjct: 428 NDDYCWLYAAIRKPNC--LVVSNDQMRDHHFSLLSRRSFLRWRQRHRVTYAGRFNRMTGA 485
Query: 540 LNLLMPP--PYSIVIQESE--NGSWHVPVITGDDL 570
+ LL+ P PY+I +Q WH+PV + D+
Sbjct: 486 VTLLLSPPRPYAIWVQRGRVSGTHWHIPVRSTCDI 520
>gi|323454977|gb|EGB10846.1| hypothetical protein AURANDRAFT_62371 [Aureococcus anophagefferens]
Length = 677
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 84/177 (47%), Gaps = 29/177 (16%)
Query: 411 VIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVILHK-----GRVSGGPA 461
+DGANV ++ NF QL+ + L + P+++L + R+SG
Sbjct: 137 ALDGANVAWYGRNFRGGNFDHGQLDRAMGALPAFFDGRVDPVLVLPRKHARASRLSG--- 193
Query: 462 QIPKNKKLLDIWRDGGALYTT-PPGSNDDWYWLYATVNCKS----LLVTNDEMRDHLFQL 516
++L+D WR L TT PPGS+DDWYW+ A+++ S V+ND RDH F
Sbjct: 194 ---DARRLVDGWRREPHLLTTVPPGSDDDWYWMLASLSVASRGCDFAVSNDAARDHHFMH 250
Query: 517 LGTSFFPRWKEKHQIRLSVSRD------GLNLLMPPPYSIVIQESENGS---WHVPV 564
L F RWK +H +R + RD L PP +S +Q E S W P+
Sbjct: 251 LAPLPFQRWKRRHVLRFAFRRDAAGAPAAFALDEPPTFSAELQRLETASHVAWLAPL 307
>gi|242079531|ref|XP_002444534.1| hypothetical protein SORBIDRAFT_07g023400 [Sorghum bicolor]
gi|241940884|gb|EES14029.1| hypothetical protein SORBIDRAFT_07g023400 [Sorghum bicolor]
Length = 121
Score = 81.6 bits (200), Expect = 1e-12, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 63/107 (58%), Gaps = 18/107 (16%)
Query: 251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
M SGVV EEPEL+ LL+++ D K D+VY +LHR R L+RQV +T +++E WF S
Sbjct: 1 MDASGVVLEEPELAVLLRVNADKGKADEVYRLLHRTRALIRQVCGTTAQVVEAWFWSDAT 60
Query: 311 AEIGVLNWDVSKVRE-------------GIVRGGG--GW---HGQGW 339
+++GV WD SKV+E + + GG W HGQGW
Sbjct: 61 SQVGVDKWDPSKVKEGIIKGGGGWHGQGWLGKQGGMERWLDRHGQGW 107
>gi|440909280|gb|ELR59204.1| Mitochondrial ribonuclease P protein 3 [Bos grunniens mutus]
Length = 584
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 111/493 (22%), Positives = 186/493 (37%), Gaps = 87/493 (17%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLK 172
C DV +++ + A+++GI Y++L+ Y+ C ++SE D
Sbjct: 152 CHSSLDVAKSVLAWVAAKNSGIV----GYDLLVKYLYLCVFHKQTSEIID---------- 197
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+++ M +T + R + + A L++ +K IP K ++Y +
Sbjct: 198 ----VYEIMKARYKRLESGAYTLLMRGLIYTDRWREALLLLEDLKKVMIPSK-KNYDDCI 252
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTL 289
G + + A+ + + +VP L A D K +K++ IL LR
Sbjct: 253 QGALFHQDVNVAWNLYQELLSHDIVPMLETLKAFFDFGKDMKDDQYSNKLHNILLYLRNN 312
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVER 349
ES I+ WF+S+ G W GQ
Sbjct: 313 QLYPGESFAHSIKTWFESI---------------------PGEQWKGQF----------- 340
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLG 403
T I ++G C C + + I + E E + ++ + +FQ ++
Sbjct: 341 TTIQQSGQCLGCGKTVESIHLSSEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFQNFVK 400
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
H PFD VIDG NV + L VV+ L + + L +L GR
Sbjct: 401 YHPPFDVVIDGLNVAKMFPKARESQVLLNVVSHLAKQN------LQVLVLGRKHMLTQNS 454
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQL 516
+ ++ + + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 455 RWRRVEMEKMQKQASFFFADNISEDDPFLLYATLHSGNHCK--FITKDLMRDHKACLPDA 512
Query: 517 LGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVPVITGDDL---- 570
F +W++ HQ+ + G + Y V+Q + SWH+P DDL
Sbjct: 513 KTQRLFFKWQQGHQLAIVSKHPGAKITFQHILSYDTVVQ-TTGDSWHIPY--DDDLVERY 569
Query: 571 --EAPRQWLCATR 581
E P +WLC R
Sbjct: 570 SYEVPTKWLCLHR 582
>gi|147858758|emb|CAN83101.1| hypothetical protein VITISV_007460 [Vitis vinifera]
Length = 435
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 8/104 (7%)
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
E+ L+ GF+ +V NEAT TS+ R+A++ + +MAFD+VKQ K GI P
Sbjct: 262 EDFKKYALRSGFQ--------EVPMNEATLTSLVRMAMSMGNGDMAFDMVKQTKPLGINP 313
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+LRSYG LF FC G+ +KA+ V+ M E GV E+P +L
Sbjct: 314 RLRSYGSELFTFCNNGDIEKAFGVEERMLEHGVYLEKPSFIPIL 357
>gi|347966898|ref|XP_321093.4| AGAP001968-PA [Anopheles gambiae str. PEST]
gi|333469850|gb|EAA01143.5| AGAP001968-PA [Anopheles gambiae str. PEST]
Length = 515
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/262 (28%), Positives = 111/262 (42%), Gaps = 44/262 (16%)
Query: 346 RVERTQIDENGVCCSCNERLVCIDIDP------RETENFASSLSNLACQREVRSDFNKFQ 399
RV+ T+I + G C SC L I + R+ A ++ R + N+FQ
Sbjct: 269 RVQETRITDGGKCSSCKGTLSSIVVSEDMFQSLRDKFLTAVLINKEIFNRTTPEELNRFQ 328
Query: 400 EWLGRHGPFDAVIDGANVGLV--NQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
+L + P+D VIDG NV NQ + Y V +R K+ LVI
Sbjct: 329 AFLAKTLPYDVVIDGLNVAFSSGNQKSPIVYA-QQVAAVVRHYVRQKKRVLVI------- 380
Query: 458 GGPAQIPKNKKLLDIW--------RDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTND 507
+K +D W R+ L+ T S DD + LYA + K+ + D
Sbjct: 381 --------GRKHMDKWRSREMKYIRENSFLFLTDDLSQDDPFLLYAALESGPKTDFFSRD 432
Query: 508 EMRDHLFQLLGTSF---FPRWKEKHQIR-LSVSRDGLNLLMPP-PYSIVIQESENGSWHV 562
MR H F +LG F RW+++HQ LS+ DG L+ P Y + +S + WHV
Sbjct: 433 LMRKHSF-MLGNELSGVFKRWQQEHQYSLLSIMPDGRVLIKAPFKYELYAHKSCDNRWHV 491
Query: 563 PVITGD----DLEAPRQWLCAT 580
P++ +E WLC +
Sbjct: 492 PLVELGYRIPKVEKQNDWLCLS 513
>gi|296214809|ref|XP_002753863.1| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 1
[Callithrix jacchus]
Length = 582
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 109/486 (22%), Positives = 193/486 (39%), Gaps = 83/486 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 155 DVAKSLLAWVAAKNNGIV----DYDLLVRYLHLCVVHKQTSEVID--------------V 196
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M + +T + R + + AF L++ +K P K ++Y + G
Sbjct: 197 YEIMKARYKILDSGGYTLLIRGLIQSDRWREAFLLLEDLKKVMTPSK-KNYDDCIQGALL 255
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A D K +K+ +IL LR
Sbjct: 256 HQDVNTAWNLYQELLGHDIIPMLETLKAFFDFGKDIKDDNYSNKLLDILLYLRNNHLYPG 315
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T I +
Sbjct: 316 ESFAHSIKTWFESV---------------------PGEQWKGQF-----------TTIQK 343
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P + E + ++ + N+F+ ++ PF
Sbjct: 344 SGQCSGCGQNIESIQLSPEDYEFLKGRIMRDVIDGGDQYKKTTPQELNRFENFVKSCPPF 403
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + +Q K++
Sbjct: 404 DIVIDGLNVAKMFPKARESQLLLNVVSQLAK----QNLRLLVLGRKHMLRKSSQWRKDE- 458
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
++ + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 459 -MEEVQKQARCFFADNISKDDPFLLYATLHSGNHCK--FITKDLMRDHKACLPDAKTQRL 515
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P ++ E P +
Sbjct: 516 FFKWQQGHQLAIINGFPGSKLTFQRILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVPTK 574
Query: 576 WLCATR 581
WLC R
Sbjct: 575 WLCLHR 580
>gi|326435878|gb|EGD81448.1| hypothetical protein PTSG_02169 [Salpingoeca sp. ATCC 50818]
Length = 662
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 102/471 (21%), Positives = 187/471 (39%), Gaps = 81/471 (17%)
Query: 133 NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192
GI L ++ LLY+ + +NL LK F+ ++ +++ P+E
Sbjct: 247 QGILLPDTSFHSLLYIFAT---------------ANLPLK-AFQTYEMLLSVGYQPSENV 290
Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM- 251
+ + L + D ++A D++ M+ F I P R++ + ++ T EV M
Sbjct: 291 LSKLVALCASNNDLDLAQDVINTMRRFNIVPHYRTFWKLIETRARVDATVAIEEVSRVMD 350
Query: 252 -------GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDW 304
G S L+ +++ +V D E + +L L R S + E
Sbjct: 351 ELRMPYPGHSAYESMNDVLAVVVECAVQQLCGD---ERVQQLAVLFRLFETSNQPLGE-- 405
Query: 305 FDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDEN-GVCCSCNE 363
++ I+ G S +W V T I+++ G C SC +
Sbjct: 406 -----------------RLCAAILEHVGR--------SDEWDVAPTTIEQHTGRCMSCAD 440
Query: 364 RLVCIDIDPRETENFASSLSN-LACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQ 422
L I + + + +++ L +R ++ ++ + G + IDG NVG
Sbjct: 441 ALRPIALSDDDLSQLSGAVTQYLQHERVPDTEVASLKQMIENLGDVEIFIDGLNVG---H 497
Query: 423 HNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTT 482
+QL+ V+ Q+ + +V+L + + + +D +D G L
Sbjct: 498 FGVKAFQLDLVLAVAHQLKAAGYSYVVVLRRHAIKRTNRW---QQARIDELQDEGRLLLL 554
Query: 483 PPGSNDDWYWLYATVNCK--SLLVTNDEMRDHLF---QLLGTSFFPRWKEKHQIRLS-VS 536
+DD ++ A V + S ++TND RDH++ ++ G F RW+ H I V
Sbjct: 555 ADKLSDDIRFICAAVQLRPHSYVLTNDMFRDHMYRVSKIPGGHLFDRWRRGHCISYDMVY 614
Query: 537 RDG-----LNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRA 582
+ G +NL+ PP + V Q +E +WH+P + WLC A
Sbjct: 615 KRGSRQPTINLMWPPKHDNVAQPTET-AWHLPCVDN-------TWLCCAYA 657
>gi|398021737|ref|XP_003864031.1| hypothetical protein, conserved [Leishmania donovani]
gi|322502265|emb|CBZ37349.1| hypothetical protein, conserved [Leishmania donovani]
Length = 694
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 104/465 (22%), Positives = 176/465 (37%), Gaps = 97/465 (20%)
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK--AYE 246
E + + RL D + A ++ ++ G+ +LRS A +C G D+ A+
Sbjct: 101 TEHVLSVILRLQCVAGDRDGATRMLAYLEQHGLL-RLRSVS-AFLQYCCSGLKDRRLAFA 158
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKK-VDKVYEILHRLRTLVRQVSESTFK-IIEDW 304
V + + EP+ AL +L V ++ V ++ +L +R V +VSE+ + ++E W
Sbjct: 159 VYEAALKHKIELTEPDYLALGRLCVQVREPVGTLFFMLQEMREHVAEVSEAMVRDVLEPW 218
Query: 305 FDSVDA-AEIGV------LNWDVSKVREG------IVRG-----GGGWHGQGWLGSGKWR 346
+ A +G+ ++ + +V E +V G G G
Sbjct: 219 VMMANEDAAVGLKPRGVPMSLQLHRVDEMHHVPQLLVASPPPSTGASARGAASPGDSAAT 278
Query: 347 VERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRS--DFNKFQEW--- 401
+ G+C +C L + L L + RS F+ W
Sbjct: 279 APPSDTQLCGICPACQAELSGYPFTAACRSHLLRELKELIIPQACRSRRALLGFEHWKRY 338
Query: 402 ----LGRHGPFDAVIDGANVGL------------------------VNQHNFSF------ 427
L D IDGAN+G + ++ F
Sbjct: 339 IHARLDAGDRVDIFIDGANLGYYGLSSWYDLAKKQLMLHCGVPESRITDNDLDFNAQCKT 398
Query: 428 ----------YQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGG 477
++L +L + R PLV+LH+ V + ++ ++ W+D G
Sbjct: 399 SGRGVDVGVNFELIDAAVKLAVDTYRMRSPLVMLHERHVEPKFMTL-QSTAIVQRWKDRG 457
Query: 478 ALYTTPPGSNDDWYWLYATVNC-------------------KSLLVTNDEMRDHLFQLLG 518
LY +P G NDD WLY + ++ + TND+MRDH F+LL
Sbjct: 458 WLYCSPTGLNDDLCWLYGALLLTDPTDTTPTSVTAASASPHRTFVCTNDKMRDHHFRLLS 517
Query: 519 TSFFPRWKEKHQIRLSVSRDG----LNLLMPPPYSIVIQESENGS 559
F RW+++H+I SR G L+ +P PY IQ+ + S
Sbjct: 518 PRAFTRWRDRHRIAFRCSRVGDRMELHWELPAPYERCIQQRDAHS 562
>gi|403263942|ref|XP_003924257.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Saimiri
boliviensis boliviensis]
Length = 581
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 108/486 (22%), Positives = 195/486 (40%), Gaps = 83/486 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 154 DVAKSLLAWVAAKNNGIVA----YDLLVKYLHLCVIHKQTSEVID--------------V 195
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M + +T + R + + + AF L++ +K P + ++Y + G
Sbjct: 196 YEIMKARYKILDSGGYTLLIRGLIQSDRWKEAFLLLEDLKKVMTPSR-KNYDDCIQGALL 254
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A D K +K+ +IL LR
Sbjct: 255 HQDVNTAWNLYQELLGHNIIPMLETLKAFFDFGKDIKDDNYSNKLLDILLYLRNNQLYPG 314
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T I +
Sbjct: 315 ESFAHSIKTWFESV---------------------PGKQWKGQF-----------TTIQK 342
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P + E + ++ + +F+ ++ PF
Sbjct: 343 SGQCSGCGKTIESIQLSPEDYEFLKGRIMRDVIDGGDQYRKTTPQELKRFENFVKSCPPF 402
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + +Q K++
Sbjct: 403 DIVIDGLNVAKMFPKARESKLLLNVVSQLAK----QNLRLLVLGRKHMLRKSSQWRKDE- 457
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDHLFQLLGTS---F 521
++ + + S DD + LYAT+ +CK +TND MRDH L +
Sbjct: 458 -MEEVQKQARCFFADNISKDDPFLLYATLHSGNHCK--FITNDLMRDHKACLPDANTQRL 514
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P ++ E P +
Sbjct: 515 FFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVPTK 573
Query: 576 WLCATR 581
WLC R
Sbjct: 574 WLCLHR 579
>gi|417402949|gb|JAA48304.1| Putative mitochondrial ribonuclease p protein 3 [Desmodus rotundus]
Length = 579
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 108/486 (22%), Positives = 190/486 (39%), Gaps = 83/486 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + ++NGI YN+L+ Y+ C ++SE F++
Sbjct: 152 DVAKSLLAWVATKNNGIV----SYNLLVKYLYLCVFHKQTSE--------------VFDV 193
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M T + R + + A L++ +K P K ++Y + G
Sbjct: 194 YEIMKVRYKSLESGANTLLIRGLIHSDRWREALVLLEDIKKVMTPSK-KNYNDCIQGALL 252
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A D K +K+ +IL LR
Sbjct: 253 HQDVNIAWNLYEELLSHDLIPMMETLKAFFDFGKDKKDDQYSNKLLDILLYLRNNQLYPG 312
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+S+ G W GQ T I +
Sbjct: 313 ESFAHSIKAWFESIP---------------------GEQWKGQF-----------TTIQK 340
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSL------SNLACQREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P E E + ++ + +FQ ++ PF
Sbjct: 341 SGQCLGCGKTIESIHLSPEEYEFLKRKILRDVIDGGDQYRKTTPQELQRFQNFVKYCPPF 400
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV+ L + K + +++L + + AQ KN+
Sbjct: 401 DIVIDGLNVAKMFPKARESQVLLGVVSHLAK----KNLRVLVLGRKHMLNSRAQWKKNE- 455
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
++ + + + S DD + LYAT+ +CK +T D +RDH L
Sbjct: 456 -MEEVQKLASCFFADNISEDDPFLLYATLHSGNHCK--FITKDLLRDHKACLPDAKTQHL 512
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ ++ G + Y V+Q + + SWH+P ++ E P +
Sbjct: 513 FFKWQQGHQLAITNRFPGSKITFQHILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVPTK 571
Query: 576 WLCATR 581
WLC R
Sbjct: 572 WLCLHR 577
>gi|301774893|ref|XP_002922861.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Ailuropoda
melanoleuca]
gi|281342881|gb|EFB18465.1| hypothetical protein PANDA_011891 [Ailuropoda melanoleuca]
Length = 581
Score = 80.1 bits (196), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 108/486 (22%), Positives = 195/486 (40%), Gaps = 83/486 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI YN+L+ Y+ C ++SE D +EI
Sbjct: 154 DVAKSLLAWVAAKNNGIV----GYNLLVRYLYLCIFHKQTSEVIDV-----------YEI 198
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+ +++P +T + + + + + A L++ +K +P + R+Y + G
Sbjct: 199 MKARYK-RLEPE--GYTLLIQGLIHSDRWKEALLLLEDIKKVMVPSR-RNYNDCIKGALL 254
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV---DAKKVDKVYEILHRLRTLVRQVS 294
+ + A+ + + + + P L D + +K+ +IL LR
Sbjct: 255 HQDVNLAWNLYQELLDHDLTPMLKTLKTFFDFGKNIKDDQYSNKLLDILLYLRDYHLYPE 314
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + E
Sbjct: 315 ESFAHSIKTWFESVP---------------------GEQWKGQF-----------TTVKE 342
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P E E ++ + +FQ ++ PF
Sbjct: 343 SGHCLGCGKAIESIHLSPEEYEFLKGKFMRDVIDGGDQYKKTTPQELERFQNFVKSRPPF 402
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV L VV++L + + + L++L + + ++ K++
Sbjct: 403 DIVIDGLNVAKTFPKARESQVLLGVVSQLAK----QNLQLLVLGRKHMLTQNSKWRKDE- 457
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDHLFQLLGTS---F 521
+ + + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 458 -MKKVQQQASCFFADNISEDDPFLLYATLHSGNHCR--FITKDLMRDHKASLRDAKTQRL 514
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMP--PPYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ ++ G L P Y V+Q + + SWH+P ++ E P +
Sbjct: 515 FFKWQQGHQLAITRRFAGSKLTFQHIPSYDTVVQTTGD-SWHIPYDEDMVERYSYEVPTK 573
Query: 576 WLCATR 581
WLC R
Sbjct: 574 WLCLHR 579
>gi|146097964|ref|XP_001468276.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134072643|emb|CAM71359.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 694
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 104/465 (22%), Positives = 175/465 (37%), Gaps = 97/465 (20%)
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK--AYE 246
E + + RL D + A ++ ++ G+ +LRS A +C G D+ A+
Sbjct: 101 TEHVLSVILRLQCVAGDRDGATRMLAYLEQHGLL-RLRSVS-AFLQYCCSGLKDRRLAFA 158
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKK-VDKVYEILHRLRTLVRQVSESTFK-IIEDW 304
V + + EP+ AL +L V ++ V ++ +L +R V +VSE+ + ++E W
Sbjct: 159 VYEAALKHKIELTEPDYLALGRLCVQVREPVGTLFFMLQEMREHVAEVSEAMVRDVLEPW 218
Query: 305 FDSVDA-AEIGV------LNWDVSKVREG------IVRG-----GGGWHGQGWLGSGKWR 346
+ A +G+ ++ + +V E +V G G G
Sbjct: 219 VMMANEDAAVGLKPRGVPMSLQLHRVDEMHHVPQLLVASPPPSTGASARGAASPGDSAAT 278
Query: 347 VERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRS--DFNKFQEW--- 401
+ G+C +C L + L L + RS F+ W
Sbjct: 279 APPSDTQLCGICPACQAELSGYPFTAACRSHLLRELKELIIPQACRSRRALLGFEHWKRY 338
Query: 402 ----LGRHGPFDAVIDGANVGL------------------------VNQHNFSF------ 427
L D IDGAN+G + + F
Sbjct: 339 IHARLDAGDRVDIFIDGANLGYYGLSSWYDLAKKQLMLHCGVPESRITDSDLDFNAQCKT 398
Query: 428 ----------YQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGG 477
++L +L + R PLV+LH+ V + ++ ++ W+D G
Sbjct: 399 SGRGVDVGVNFELIDAAVKLAVDTYRMRSPLVMLHERHVEPKFMTL-QSTAIVQRWKDRG 457
Query: 478 ALYTTPPGSNDDWYWLYATVNC-------------------KSLLVTNDEMRDHLFQLLG 518
LY +P G NDD WLY + ++ + TND+MRDH F+LL
Sbjct: 458 WLYCSPTGLNDDLCWLYGALLLTDPTDTTPTSVTAASASPHRTFVCTNDKMRDHHFRLLS 517
Query: 519 TSFFPRWKEKHQIRLSVSRDG----LNLLMPPPYSIVIQESENGS 559
F RW+++H+I SR G L+ +P PY IQ+ + S
Sbjct: 518 PRAFTRWRDRHRIAFRCSRVGDRMELHWELPAPYERCIQQRDAHS 562
>gi|301611732|ref|XP_002935379.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Xenopus
(Silurana) tropicalis]
Length = 583
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/381 (22%), Positives = 146/381 (38%), Gaps = 59/381 (15%)
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS---VDAKKVD 277
I P ++YG + G + A+ + M E+ + P E + +L D +
Sbjct: 240 ITPSPKNYGYCIQGAIYHKDDKLAWALYNEMLEADLTPCEDAIQSLFNADPALQDETFRN 299
Query: 278 KVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQ 337
K++ + R E + I+ WF+S+
Sbjct: 300 KLFGVFDYFRDHQIYPGEPLMQSIKSWFESIP---------------------------- 331
Query: 338 GWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ------REV 391
+ WR + + ENG C C ++L I + P E + +
Sbjct: 332 ----NESWRGHLSTVSENGHCQVCKQQLESIHLMPEEYRTLKDVFLQSVIEGHDTFRKTT 387
Query: 392 RSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVIL 451
+ +F++++ H P+D V+DG NV + L +V+ L S KR+ LV+
Sbjct: 388 PQELQEFRQFVRSHPPYDIVVDGLNVAYITTKGRGSQTLLDIVSGL--CSGGKRV-LVLG 444
Query: 452 HKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKS--LLVTNDEM 509
K + ++ +LL D + S DD + LYA++N S +T D M
Sbjct: 445 RKHMLQESRTWQRRHMQLLQQRAD---CFFIDNISEDDPFLLYASLNSGSHCCFLTRDLM 501
Query: 510 RDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPP--YSIVIQESENGSWHVPV 564
RDH L F +W+ HQ+ L G +L+ P Y ++Q ++ SWH+P
Sbjct: 502 RDHKSCLPDAQTKRLFFKWQRGHQLVLPFYTPGRKVLLQPIMCYDTIVQRTD-FSWHIPY 560
Query: 565 ----ITGDDLEAPRQWLCATR 581
+ E P+ WLC +
Sbjct: 561 DKMGVDRASFEVPKTWLCLQK 581
>gi|410925116|ref|XP_003976027.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Takifugu
rubripes]
Length = 507
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/391 (22%), Positives = 151/391 (38%), Gaps = 79/391 (20%)
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK--KVDK 278
+ P R+YG + G + G+ + + + G+ P E AL K ++ DK
Sbjct: 174 LTPSARNYGDIIAGAVEHGDAATGWALYEELIGKGMSPHEETWDALFKRRSISQPDDQDK 233
Query: 279 VYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQG 338
+ +IL +R S I+ WF
Sbjct: 234 LLQILLYMRDNQIYPGHSLASTIKTWF--------------------------------- 260
Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASS-LSNLACQREVRS---- 393
E G C C L I + E + ++++ R+V +
Sbjct: 261 ---------------ERGTCGCCKSELESIQLTAAEYQQLKDRVMTDILQGRDVFTKTTP 305
Query: 394 -DFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILH 452
+ F+ ++ R FD V+DG NV +NQ Q T++ + ++ LV+
Sbjct: 306 KELESFRSFVKRKPAFDVVVDGLNVANINQDKSR--QSKTLLAVVSELQHQGLTVLVLGR 363
Query: 453 KGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDE 508
+ + + + + L+ + + T S DD + LYAT+ +C+ V+ D
Sbjct: 364 RHMLQPSRSWVRHDMNLV---QQKAHCFFTENISEDDPFLLYATLFSGNHCR--FVSRDL 418
Query: 509 MRDH---LFQLLGTSFFPRWKEKHQIRL----SVSRDGLNLLMPPPYSIVIQESENGSWH 561
MRDH L F +W+ HQ+ L S +R G+ L P Y ++Q SE+ +WH
Sbjct: 419 MRDHKACLTDAATRRLFFKWQRGHQMVLDGSVSAAR-GIRFLSVPSYDTIVQSSED-AWH 476
Query: 562 VPVITGDD---LEAPRQWLCATRARVKSLHS 589
+P +D E P++WLC T+ + HS
Sbjct: 477 IPYDDTEDRSTYEVPQRWLCLTKRGEMAAHS 507
>gi|449504396|ref|XP_002199796.2| PREDICTED: mitochondrial ribonuclease P protein 3 [Taeniopygia
guttata]
Length = 480
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 88/393 (22%), Positives = 155/393 (39%), Gaps = 64/393 (16%)
Query: 208 MAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
MAF +++++K IP ++ Y + + A+E+ M GV+P L +
Sbjct: 125 MAFTVLEEVKKIMIPSRM-CYESCIKAASHHQEMELAFELYNEMLAKGVIPTLDVLQSFF 183
Query: 268 KLSVDAKKVD---KVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR 324
S K + +++ IL LR ++ + I+ WF+S+
Sbjct: 184 DFSRGMKGAELQKELFGILLYLRENQIYPHKTFMRSIKLWFESL---------------- 227
Query: 325 EGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL-- 382
GG W GQ T + ++G C C +L ++ E + + +
Sbjct: 228 -----PGGNWRGQ-----------LTNVKDSGQCPVCKHQLEESNLTEEEYSHLSERILK 271
Query: 383 ----SNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLR 438
++ + FQ ++ PFD VIDG NV + L VN L
Sbjct: 272 DVIHGTDTFRKTSPKELEAFQTFVENRLPFDIVIDGLNVSHIKSRRMQCENLLDAVNCLA 331
Query: 439 QMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV- 497
+ + L++L + + + ++++ ++ + S DD + LYAT+
Sbjct: 332 KENAR----LLVLGRKHMLMNSSNW--KREIVKEMQNKADFFFAENISEDDAFLLYATLR 385
Query: 498 ---NCKSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPP--YS 549
+C+ VT D +RDH L L F +W+ HQI S DG ++ P Y
Sbjct: 386 SGKHCR--FVTRDFLRDHKACLSDSLTRHLFRKWQRGHQIVFFPSADGRSIKFLPALRYD 443
Query: 550 IVIQESENGSWHVPVI----TGDDLEAPRQWLC 578
V+Q + +WH+P + PR+WLC
Sbjct: 444 CVVQ-TTGDTWHIPYKDVFEEKYSYQIPRKWLC 475
>gi|157822293|ref|NP_001100200.1| mitochondrial ribonuclease P protein 3 precursor [Rattus
norvegicus]
gi|221272061|sp|B5DF07.1|MRRP3_RAT RecName: Full=Mitochondrial ribonuclease P protein 3;
Short=Mitochondrial RNase P protein 3; Flags: Precursor
gi|149051251|gb|EDM03424.1| similar to 1110008L16Rik protein (predicted) [Rattus norvegicus]
gi|197246823|gb|AAI68878.1| Similar to 1110008L16Rik protein [Rattus norvegicus]
Length = 587
Score = 79.3 bits (194), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 117/531 (22%), Positives = 205/531 (38%), Gaps = 86/531 (16%)
Query: 76 KSTVNESSAPNTGTMSNKSKK--KARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133
KSTV + P +K K+ K + + V+ CS DV ++L + A++N
Sbjct: 112 KSTVQLPTKPLNSEEWDKLKEDFKGKASFEDFVISQMTRSCSSV-DVAKSLLAWVAAKNN 170
Query: 134 GITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192
GI YN+L+ Y+ C ++SE D +++ M
Sbjct: 171 GIV----GYNLLVKYLYLCVFHKQTSEVID--------------VYEIMKAKYKSLESGG 212
Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
+T + R + + A L++ +K +P K ++YG + G + + A+ + +
Sbjct: 213 YTLLIRGLIHSDRWREALLLLEDIKKVMVPSK-KNYGDCIQGALLHQDVNVAWSLYQELV 271
Query: 253 ESGVVPEEPELSALL---KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309
++P L A K D + +++ +IL LR ES I+ WF+S+
Sbjct: 272 GHNLIPLLETLKAFFDHGKDMNDDQYSNQLLDILLYLRNNQLYPGESFAHSIKTWFESIP 331
Query: 310 AAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID 369
+ W+ + T I ++G C SC + I
Sbjct: 332 GRQ--------------------------------WKGQFTTIQKSGQCSSCGRAIESIH 359
Query: 370 IDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH 423
+ P E E ++ ++ + +F+ ++ PFD VIDG NV +
Sbjct: 360 LSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFVKSCPPFDIVIDGLNVAKM--- 416
Query: 424 NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTP 483
F + N L +S + L +L GR K ++ R +
Sbjct: 417 ---FPKGRESQNLLGIVSQLAQQNLQLLVLGRKHMLRPSSQWRKDEMEQVRKQAHCFFAD 473
Query: 484 PGSNDDWYWLYATVN----CKSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVS 536
S DD + LYAT+N CK +T D +RDH L F +W++ HQ+ ++
Sbjct: 474 NISEDDPFLLYATLNSGSHCK--FITKDLLRDHKACLPDARAQRLFFKWQQGHQLAITKG 531
Query: 537 --RDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEAPRQWLCATR 581
+ L Y V+Q + + +WH+P ++ E P +WLC R
Sbjct: 532 FLKSKLTFQHILSYDTVVQTTGD-TWHIPYDEDLVPRSSCEVPTKWLCLQR 581
>gi|299470328|emb|CBN78378.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 723
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 109/477 (22%), Positives = 167/477 (35%), Gaps = 118/477 (24%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD AL LY A G +S+ +N +L V + G
Sbjct: 45 KAGDADRALLLYGKAAEVGCMISETVFNAVLSVSN-----------------------GV 81
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ M+ + P E + + R A ++ E AF V++M G+ P+LR+Y P L G
Sbjct: 82 RVLSDMVEAGIKPRENHYAFLLREAASRGAFEEAFSQVREMVDGGVRPRLRTYSPLLKGL 141
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C + A EV +HM GV P E ++K A ++ R L +Q++
Sbjct: 142 CHKPDMTLASEVWSHMTAHGVQPTPEEHIDMIKGWAAAGELRPRVADGSVERCL-QQLAG 200
Query: 296 STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLG---------SGKWR 346
F++I DA + VS G G G H Q L S +
Sbjct: 201 MDFELIP----CRDAGAAASCDDHVS----GSSAGSGDHHLQTLLSAFNADSNFVSSESD 252
Query: 347 VE-------------RTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQR---- 389
V+ + GVC C L + +DP S+L LA +
Sbjct: 253 VQTYFSSPPRVASVSSASLASGGVCDCCGAALKVVGLDPEARARVRSALVKLASETAYPT 312
Query: 390 -------------------------------------EVRSDFNKFQEWL------GRHG 406
E D +F WL G H
Sbjct: 313 PPPPPALPLPPKRRQSSRLDYAYAGEGQGEMDRRGLGEAMGDLERFAAWLEERRREGVH- 371
Query: 407 PFDAVIDGANVGLVNQH-NFSFYQLNTVVNRLRQMSPSKRMPLVIL------------HK 453
F V+DG NV Q+ ++++ V RQ+ LVIL +
Sbjct: 372 -FTTVVDGCNVAYYGQNKEGGKFEISQVDLMARQLERDGERVLVILPERYLRPCVPNSAR 430
Query: 454 GRVSGGPAQIPKNKKL--LDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTNDE 508
R P+ ++ L +D WR LY+ G++DD +W+Y TV+ + + +E
Sbjct: 431 SRRGKNPSSALSDEDLETIDRWRRRQMLYSCANGTDDDLFWMYFTVSSDATAIEGEE 487
>gi|332229154|ref|XP_003263756.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1
[Nomascus leucogenys]
Length = 583
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 108/484 (22%), Positives = 191/484 (39%), Gaps = 85/484 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 156 DVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVFHMQTSEVID--------------V 197
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M +T + R + + A L++ +K P K ++Y + G
Sbjct: 198 FEIMKARYKTLEPGGYTLLIRGLIHSDRWREALLLLEDVKKVMTPSK-KNYNDCIRGALL 256
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + +VP L A D K +K+ +IL LR
Sbjct: 257 HQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 316
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + +
Sbjct: 317 ESFAHSIKTWFESVP---------------------GKQWKGQF-----------TTVQK 344
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C +C + + I + P E E + ++ + +F+ ++ PF
Sbjct: 345 SGQCSACGKTIESIQLSPEEYEYLKGKIMRDVIDGGDQYKKTTPQELKRFENFIKSCPPF 404
Query: 409 DAVIDGANVG-LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
D VIDG NV + + S + LN V +Q + L++L + + +Q K+
Sbjct: 405 DIVIDGLNVAKMFPKARESQFLLNVVSQLAKQ-----NLRLLVLGRKHMLRQCSQWRKD- 458
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
++ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 459 EMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQR 515
Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPR 574
F +W++ HQ+ + G L Y V+Q + + SWH+P ++ E P
Sbjct: 516 LFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVPT 574
Query: 575 QWLC 578
+WLC
Sbjct: 575 KWLC 578
>gi|57090505|ref|XP_547772.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Canis lupus
familiaris]
Length = 581
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 108/488 (22%), Positives = 194/488 (39%), Gaps = 87/488 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 154 DVAKSLLAWVAAKNNGIV----GYDLLVKYLYLCVVHKQTSEIID--------------V 195
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M +T + + + + A L++ +K IP K ++Y + G
Sbjct: 196 YEIMKARYKRLESGGYTLLIQGLIHSDRWREALLLLEDVKKVMIPSK-KNYNDCIEGALL 254
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A + K +K+++IL LR
Sbjct: 255 HQDVNLAWNLYQELLGYDLIPMLKTLKAFFDFGKNIKDDQYSNKLFDILLYLRNNHLYPE 314
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + E
Sbjct: 315 ESFAHSIKTWFESVP---------------------GEHWKGQF-----------TTVKE 342
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + E E+ + ++ + +FQ ++ PF
Sbjct: 343 SGQCLGCGKTIESIHLSSEEYESLKGKIMKDVIDGGDLYKKTTPQELERFQNFVKCCPPF 402
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV L VV++L + + + L++L + + ++ K++
Sbjct: 403 DIVIDGLNVAKTFPKARESQVLLDVVSQLAK----QNLELLVLGRKHMLTQHSRWRKDE- 457
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
+ + + + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 458 -MKMVQKQASCFFADNISEDDPFLLYATLHSGNHCK--FITKDLMRDHKACLHNAKTQHL 514
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMP--PPYSIVIQESENGSWHVPVITGDDL------EAP 573
F +W+ HQ+ + G ++ P Y V+Q + + SWH+P DD+ E P
Sbjct: 515 FFKWQRGHQLAILNRLPGSKIIFQNIPSYDTVVQTTGD-SWHIPY--DDDMVERYSYEVP 571
Query: 574 RQWLCATR 581
+WLC R
Sbjct: 572 TKWLCLHR 579
>gi|449274768|gb|EMC83846.1| Mitochondrial ribonuclease P protein 3, partial [Columba livia]
Length = 477
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 155/403 (38%), Gaps = 74/403 (18%)
Query: 208 MAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
MA L++++K IP + SY + + + A+++ M +VP L
Sbjct: 113 MALTLLEEVKQLMIPSR-GSYESCIKAASRHQEMNLAFQLYCEMLAEDLVPTLDVLQGFF 171
Query: 268 KLSVDAKKVD---KVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR 324
S K + +++ IL LR ++ I+ WF+S+
Sbjct: 172 DFSRGMKGAELQNQLFGILLYLRENQIYPHKTFIWSIKLWFESIPG-------------- 217
Query: 325 EGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL-- 382
G WR T I ++G C CN +L ++ E + +
Sbjct: 218 ------------------GNWRGHLTNIKDSGQCPVCNHQLEDSNLTEEEYKCLRERIIK 259
Query: 383 ----SNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLR 438
++ +F FQ ++ PFD VIDG NV + L VN L
Sbjct: 260 DVIHGTDTFRKTSPQEFEAFQTFVENRLPFDIVIDGLNVSHIKPRKMQCENLFEAVNCL- 318
Query: 439 QMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV- 497
+ LV+ K +S P ++++ ++ + S DD + LYAT+
Sbjct: 319 --AKGNARLLVLGRKHMLSNSPNW---KREVMKEMQNKADFFFAENISEDDTFLLYATLR 373
Query: 498 ---NCKSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDG---------LNL 542
+CK VT D +RDH L + F +W+ HQI +S S +G L++
Sbjct: 374 SGKHCK--FVTRDFLRDHKACLSDSVTRHLFRKWQRGHQIVISSSGEGKRLKFLEMVLSV 431
Query: 543 LMPPP---YSIVIQESENGSWHVPVITGDD----LEAPRQWLC 578
+ P Y V+Q + +WH+P D E PR+WLC
Sbjct: 432 FIQQPALRYDCVVQ-TTGDTWHIPYKDTFDEKYSYEVPRKWLC 473
>gi|297694927|ref|XP_002824715.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2 [Pongo
abelii]
Length = 583
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 113/508 (22%), Positives = 203/508 (39%), Gaps = 85/508 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ R+ S E + ++ DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTRKTSFESWILSQMAGYHSSVDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D FEI + ++P + + R + + A L+
Sbjct: 188 HMQTSEVIDV-----------FEIMKARYK-TLEPTGCSL--LIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVP--------------------- 331
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C C + + I + P E E +
Sbjct: 332 GKQWKGQF-----------TTVQKSGRCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 380
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVG-LVNQHNFSFYQLNTVVNRLRQMSPS 443
++ + +F+ ++ PFD VIDG NV + + S + LN V +Q
Sbjct: 381 DQYRKTTPWELKRFKNFIKSCPPFDVVIDGLNVAKMFPKVRESQFLLNVVSQLAKQ---- 436
Query: 444 KRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NC 499
+ L++L + + +Q ++ ++ ++ + + S DD + LYAT+ +C
Sbjct: 437 -NLRLLVLGRKHMLRKCSQWSQD-EMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHC 493
Query: 500 KSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQE 554
+ +T D MRDH L F +W++ HQ+ ++ G L P Y V+Q
Sbjct: 494 R--FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAITNRFPGSKLTFQPILSYDTVVQT 551
Query: 555 SENGSWHVP----VITGDDLEAPRQWLC 578
+ + SWH+P ++ E P +WLC
Sbjct: 552 TGD-SWHIPYDEDLVERYSYEVPTKWLC 578
>gi|195048433|ref|XP_001992525.1| GH24799 [Drosophila grimshawi]
gi|193893366|gb|EDV92232.1| GH24799 [Drosophila grimshawi]
Length = 537
Score = 78.6 bits (192), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 116/254 (45%), Gaps = 23/254 (9%)
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDI-DPRETENFASSLS-----NLACQREVRSDFNK 397
+++V T++D G C +C + L + I D + E S L+ N Q+ + +
Sbjct: 288 QFQVASTRLDRMGKCTACQQHLQHVAISDAQFAELHESFLAKVLIRNDVFQKSTPEEVAR 347
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
F++++ + P+D VIDG NV + QL ++ + + +R +++L + +
Sbjct: 348 FKQYVEQTAPYDCVIDGLNVAYSTGNKKPPQQLAKLLATVVRYFKERRKRVLVLGRQHMR 407
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQ 515
+K + + +++ T S+DD + LYAT+ ++ + D MR H F
Sbjct: 408 NW------SKPVWQYIQSNASVFLTNNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFL 461
Query: 516 LLG--TSFFPRWKEKHQIRL-SVSRDGLNLLMPPPYSIVIQESENGSWHVPVITG----- 567
L G + F RW+++HQ L + ++ G ++ P + N WHVP
Sbjct: 462 LGGDLKAVFRRWQQEHQYSLVTQTQTGQIIVKEPIRHRLSAHKVNNVWHVPCCDTYMTQP 521
Query: 568 -DDLEAPRQWLCAT 580
D E P +WLC T
Sbjct: 522 PDSFEVPEKWLCLT 535
>gi|195162441|ref|XP_002022064.1| GL14442 [Drosophila persimilis]
gi|194103962|gb|EDW26005.1| GL14442 [Drosophila persimilis]
Length = 530
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 36/257 (14%)
Query: 346 RVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQ 399
RV +++ G C C + L + I E + Q+ + +F+
Sbjct: 281 RVTASRLGPLGKCQECRQHLQPVAISDEEFRQLSECFLEKVLIRGDVFQKSTPEEMLRFK 340
Query: 400 EWLGRHGPFDAVIDGANVGLVNQHNFSFYQ----LNTVVNRLRQMSPSKRMPLVILHKGR 455
+++ + P+D VIDG NV + Q L TVV ++ HK
Sbjct: 341 QYVEKTAPYDCVIDGLNVAYSTGAKKAPQQLAKLLATVVRHFKER-----------HKRV 389
Query: 456 VSGGPAQIPK-NKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDH 512
+ G + K +K + ++ +L+ T S+DD + LYAT+ ++ + D MR H
Sbjct: 390 LVLGREHMRKWSKSAMHYVQNNASLFLTNNLSHDDPFLLYATIRSGQETDFFSRDLMRTH 449
Query: 513 LFQLLGTSF---FPRWKEKHQIRLSVSRDGLNLLMPPP--YSIVIQESENGSWHVP---V 564
F LLG F RW+++HQ L +++ P + + + ++E GSWHVP V
Sbjct: 450 AF-LLGAELKPIFRRWQQEHQFSLVTQTQTGKIIVKEPIRHRLSVHQAEGGSWHVPYCDV 508
Query: 565 IT---GDDLEAPRQWLC 578
T D + P WLC
Sbjct: 509 YTPNPTDSFDVPEHWLC 525
>gi|194377976|dbj|BAG63351.1| unnamed protein product [Homo sapiens]
Length = 488
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 109/507 (21%), Positives = 200/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 37 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 92
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 93 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 138
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 139 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 197
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR + ES I+ WF+SV
Sbjct: 198 KDDNYSNKLLDILSYLRNNQLYLGESFAHSIKTWFESV---------------------P 236
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C C + + I + P E E +
Sbjct: 237 GKQWKGQF-----------TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 285
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 286 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 341
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 342 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 399
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 400 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 457
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 458 GD-SWHIPYDEDLVERCSCEVPTKWLC 483
>gi|426248382|ref|XP_004017942.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1 [Ovis
aries]
Length = 485
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/491 (21%), Positives = 184/491 (37%), Gaps = 83/491 (16%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLK 172
C DV +++ + A++NGI Y++L+ Y+ C ++SE D
Sbjct: 53 CHSSLDVAKSVLAWVAAKNNGIV----GYDLLVKYLYLCVFHKQTSEIID---------- 98
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+++ M +T + R + + A L++ +K IP K ++Y +
Sbjct: 99 ----VYEIMKARYKRLESGAYTLLMRGLIYTDRWREALLLLEDLKKVMIPSK-KNYDDCI 153
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTL 289
G + + A+ + + +VP L A D K +K++ IL LR
Sbjct: 154 QGALFHQDVNVAWNLYQELLNHDIVPMLETLKAFFDFGKDMKDDQYSNKLHNILLYLRNN 213
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVER 349
ES I+ WF+S+ G W GQ
Sbjct: 214 QLYPGESFAHSIKTWFESI---------------------PGEQWKGQF----------- 241
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLG 403
T I ++G C C + + I + E E + ++ + +FQ ++
Sbjct: 242 TTIQQSGQCLGCGKTVESIHLSSEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFQNFVK 301
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
PFD VIDG NV + L VV+ L + + L +L GR
Sbjct: 302 YCPPFDVVIDGLNVAKMFPKARESQVLLNVVSHLAKQN------LQVLVLGRKHMLTQNS 355
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQL 516
+ ++ + + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 356 RWRRVEMEKMQKQASFFFADNISEDDPFLLYATLHSGNHCK--FITKDLMRDHRACLPDA 413
Query: 517 LGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDL 570
F +W++ HQ+ + G + Y V+Q + SWH+P ++
Sbjct: 414 KTQRLFFKWQQGHQLAIVSKHPGAKITFQHILSYDTVVQ-TTGDSWHIPYDDNLVERYSY 472
Query: 571 EAPRQWLCATR 581
E P +WLC R
Sbjct: 473 EVPTKWLCLHR 483
>gi|198467669|ref|XP_001354471.2| GA14011 [Drosophila pseudoobscura pseudoobscura]
gi|198149353|gb|EAL31524.2| GA14011 [Drosophila pseudoobscura pseudoobscura]
Length = 530
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/257 (25%), Positives = 110/257 (42%), Gaps = 36/257 (14%)
Query: 346 RVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQ 399
RV +++ G C C + L + I E + Q+ + +F+
Sbjct: 281 RVTASRLGPLGKCQECRQHLQPVAISDEEFRQLSECFLEKVLIRGDVFQKSTPEEVLRFK 340
Query: 400 EWLGRHGPFDAVIDGANVGLVNQHNFSFYQ----LNTVVNRLRQMSPSKRMPLVILHKGR 455
+++ + P+D VIDG NV + Q L TVV ++ HK
Sbjct: 341 QYVEKTAPYDCVIDGLNVAYSTGAKKAPQQLAKLLATVVRHFKER-----------HKRV 389
Query: 456 VSGGPAQIPK-NKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDH 512
+ G + K +K + ++ +L+ T S+DD + LYAT+ ++ + D MR H
Sbjct: 390 LVLGREHMRKWSKSAMHYVQNNASLFLTNNLSHDDPFLLYATIRSGQETDFFSRDLMRTH 449
Query: 513 LFQLLGTSFFP---RWKEKHQIRLSVSRDGLNLLMPPP--YSIVIQESENGSWHVP---V 564
F LLG P RW+++HQ L +++ P + + + ++E GSWHVP V
Sbjct: 450 AF-LLGAELKPIFRRWQQEHQFSLVTQTQTGKIIVKEPIRHRLSVHQAEGGSWHVPYCDV 508
Query: 565 IT---GDDLEAPRQWLC 578
T D + P WLC
Sbjct: 509 YTPNPTDSFDVPEHWLC 525
>gi|441595333|ref|XP_004087233.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Nomascus
leucogenys]
Length = 436
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 108/484 (22%), Positives = 191/484 (39%), Gaps = 85/484 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 9 DVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVFHMQTSEVID--------------V 50
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M +T + R + + A L++ +K P K ++Y + G
Sbjct: 51 FEIMKARYKTLEPGGYTLLIRGLIHSDRWREALLLLEDVKKVMTPSK-KNYNDCIRGALL 109
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + +VP L A D K +K+ +IL LR
Sbjct: 110 HQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 169
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + +
Sbjct: 170 ESFAHSIKTWFESV---------------------PGKQWKGQF-----------TTVQK 197
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C +C + + I + P E E + ++ + +F+ ++ PF
Sbjct: 198 SGQCSACGKTIESIQLSPEEYEYLKGKIMRDVIDGGDQYKKTTPQELKRFENFIKSCPPF 257
Query: 409 DAVIDGANVG-LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
D VIDG NV + + S + LN V +Q + L++L + + +Q K+
Sbjct: 258 DIVIDGLNVAKMFPKARESQFLLNVVSQLAKQ-----NLRLLVLGRKHMLRQCSQWRKD- 311
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
++ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 312 EMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQR 368
Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPR 574
F +W++ HQ+ + G L Y V+Q + + SWH+P ++ E P
Sbjct: 369 LFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVPT 427
Query: 575 QWLC 578
+WLC
Sbjct: 428 KWLC 431
>gi|401427932|ref|XP_003878449.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494697|emb|CBZ30000.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 693
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 67/138 (48%), Gaps = 24/138 (17%)
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC----- 499
R PLV+LH+ V + +N +L W+D G LY +P G NDD WLY +
Sbjct: 426 RSPLVMLHERHVEPKFMTL-QNTAILQRWKDRGWLYCSPTGLNDDLCWLYGALLLTDPTD 484
Query: 500 --------------KSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDG----LN 541
++ + TND+MRDH F+LL F RW+++H+I SR G L
Sbjct: 485 TTPTSVTATSASPHRTFVCTNDKMRDHHFRLLSPRAFTRWRDRHRIAFRCSRVGDRTELR 544
Query: 542 LLMPPPYSIVIQESENGS 559
+P PY IQ+ + S
Sbjct: 545 WELPAPYERCIQQHDAYS 562
>gi|227908787|ref|NP_079649.1| mitochondrial ribonuclease P protein 3 precursor [Mus musculus]
gi|81900785|sp|Q8JZY4.1|MRRP3_MOUSE RecName: Full=Mitochondrial ribonuclease P protein 3;
Short=Mitochondrial RNase P protein 3; Flags: Precursor
gi|22028176|gb|AAH34876.1| RIKEN cDNA 1110008L16 gene [Mus musculus]
gi|74207319|dbj|BAE30844.1| unnamed protein product [Mus musculus]
gi|74207414|dbj|BAE30887.1| unnamed protein product [Mus musculus]
gi|148704785|gb|EDL36732.1| mCG22352, isoform CRA_c [Mus musculus]
Length = 584
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 106/486 (21%), Positives = 184/486 (37%), Gaps = 83/486 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI YN+L+ Y+ C ++SE D +
Sbjct: 153 DVAKSLLAWVAAKNNGIV----GYNLLVKYLYLCVFHKQTSEVID--------------V 194
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M +T + R + + + L++ +K +P K ++YG + G
Sbjct: 195 YEIMKAKYKSLESGGYTLLIRGLIHSDRWRESLLLLEDIKKVMVPSK-KNYGDCIQGALL 253
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A D DK+ +IL LR
Sbjct: 254 HQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKLLDILLYLRNNQLYPG 313
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+S+ + W+ + T I +
Sbjct: 314 ESFAHSIKTWFESIPGRQ--------------------------------WKGQFTTIQK 341
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + I + P E E + ++ + +F+ ++ PF
Sbjct: 342 SGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFESFVNSCPPF 401
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + F + N L +S + L +L GR K+
Sbjct: 402 DIVIDGLNVAKM------FPKGRESQNLLGVVSQLAQQNLQLLVLGRKHMLRPSSQWRKE 455
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATVN----CKSLLVTNDEMRDH---LFQLLGTSF 521
++ R + S DD + LYAT+N CK +T D +RDH L
Sbjct: 456 EMEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCK--FITKDLLRDHKACLPDARTQRL 513
Query: 522 FPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + + L Y V+Q + + SWH+P ++ E P +
Sbjct: 514 FFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDLVQRSSCEVPTK 572
Query: 576 WLCATR 581
WLC R
Sbjct: 573 WLCLQR 578
>gi|298707702|emb|CBJ26019.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 115
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 58/113 (51%), Gaps = 19/113 (16%)
Query: 479 LYTTPPGSNDDWYWLYATVNCKS--LLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSV- 535
+ + P +NDDWYWLYA V L++TNDEMRDH F +L F RWKE+HQ R
Sbjct: 2 IQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFG 61
Query: 536 -------SRDGLNLLMPPP--YSIVIQESENGSWHVPVITGDDLEAPRQWLCA 579
D ++ P YS Q+ + SWHVP LE R WLCA
Sbjct: 62 DWKGEGGDDDAREVITEEPRSYSKRTQKGVD-SWHVP------LERSRDWLCA 107
>gi|410212502|gb|JAA03470.1| KIAA0391 [Pan troglodytes]
gi|410252808|gb|JAA14371.1| KIAA0391 [Pan troglodytes]
gi|410301992|gb|JAA29596.1| KIAA0391 [Pan troglodytes]
gi|410334691|gb|JAA36292.1| KIAA0391 [Pan troglodytes]
Length = 583
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/507 (21%), Positives = 200/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVP--------------------- 331
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C +C + + I + P E E +
Sbjct: 332 GKQWKGQF-----------TTVRKSGQCSACGKTIESIQLSPEEYECLKGKIMRDVIDGG 380
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 381 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----Q 436
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 437 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 494
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 495 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 552
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 553 GD-SWHIPYDEDLVERCSYEVPTKWLC 578
>gi|426376677|ref|XP_004055120.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1
[Gorilla gorilla gorilla]
Length = 583
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVP--------------------- 331
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ-- 388
G W GQ T + ++G C C + + I + P E E + +
Sbjct: 332 GKQWKGQF-----------TTVRKSGRCSGCGKTIESIQLSPEEYECLKGKIMKDVIEGG 380
Query: 389 ----REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
+ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 381 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 436
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 437 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 494
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 495 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQHILSYDTVVQTT 552
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 553 GD-SWHIPYDEDLVERCSYEVPTKWLC 578
>gi|149692913|ref|XP_001491097.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Equus
caballus]
Length = 584
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 112/503 (22%), Positives = 201/503 (39%), Gaps = 87/503 (17%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGD 162
E + ++ C DV ++L + A++NGI Y++L+ Y+ C ++SE D
Sbjct: 142 ENWISSQMAHCRSSVDVAKSLLAWVAAKNNGII----GYDLLVKYLYLCVFHKQTSEVID 197
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+++ M T + + R + + A L++ +K IP
Sbjct: 198 --------------VYEIMKTRYKSLESGGNSLLIRGLIHSDRWREALLLLEDIKKVMIP 243
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKV 279
K ++Y + G + A+++ + VVP L A D K +K+
Sbjct: 244 SK-KNYHDCIQGALLHQDVKTAWDLYQELLGHDVVPMLETLKAFFDFGKDIKDDQYSNKL 302
Query: 280 YEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGW 339
+IL LR ES I+ WF+SV G W GQ
Sbjct: 303 LDILLYLRNNQLYPGESFAHSIKTWFESVP---------------------GEQWKGQF- 340
Query: 340 LGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL------SNLACQREVRS 393
T I ++G C C + + I + P E E + ++
Sbjct: 341 ----------TTIQKSGQCLGCGKTIESIRLSPEEYEFLKGKILRDVIDGGDQYKKTTPQ 390
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHK 453
+ +FQ ++ PFD VIDG NV + L VV++L + + + L++L +
Sbjct: 391 ELKRFQNFVKHCPPFDIVIDGLNVAKMFPKARESQVLLDVVSQLAK----QNLRLLVLGR 446
Query: 454 GRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEM 509
+ ++ +++ +++ + + + S DD + LYAT+ +CK +T D M
Sbjct: 447 KHMLRQGSRWRRDE--MEMVQKQASCFFADNISEDDPFLLYATLHSGNHCK--FITKDLM 502
Query: 510 RDH---LFQLLGTSFFPRWKEKHQI----RLSVSRDGLNLLMPPPYSIVIQESENGSWHV 562
RDH L F +W++ HQ+ RL S+ ++ + V+Q + + SWH+
Sbjct: 503 RDHKACLPDAKTQRLFFKWQQGHQLAIINRLPGSKITFQRIL--SHDTVVQTTGD-SWHI 559
Query: 563 P----VITGDDLEAPRQWLCATR 581
P ++ E P +WLC R
Sbjct: 560 PYDEDLVERYSYEVPTKWLCLHR 582
>gi|157875101|ref|XP_001685956.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129029|emb|CAJ06509.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 694
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 69/138 (50%), Gaps = 24/138 (17%)
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLY---------- 494
R PLV+LH+ V +N ++ W+D G LY +P G NDD WLY
Sbjct: 426 RSPLVMLHERHVEP-KFMTSQNTAIVQRWKDRGWLYCSPTGLNDDLCWLYGALLLTDPTD 484
Query: 495 ------ATVNC---KSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDG----LN 541
AT + ++ + TND+MRDH F+LL F RW+++H+I SR G L+
Sbjct: 485 ATPTSVATASASPHRTFVCTNDKMRDHHFRLLSPRAFTRWRDRHRIAFRCSRVGDRTELH 544
Query: 542 LLMPPPYSIVIQESENGS 559
+P PY IQ+ + S
Sbjct: 545 WELPAPYERCIQQRDAHS 562
>gi|27882031|gb|AAH44580.1| KIAA0391 [Homo sapiens]
Length = 583
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 110/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVP--------------------- 331
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C C + + I + P E E +
Sbjct: 332 GKQWKGQF-----------TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 380
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + S
Sbjct: 381 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKRS--- 437
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 438 -LRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 494
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 495 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 552
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 553 GD-SWHIPYDEDLVERCSCEVPTKWLC 578
>gi|219122687|ref|XP_002181672.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406948|gb|EEC46886.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 690
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 91/220 (41%), Gaps = 52/220 (23%)
Query: 392 RSDFNKFQEWLGRHG--PFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMS-------P 442
R + +F EWL H PF A++DGANV N + Q+ VV++L M P
Sbjct: 461 RRNLFEFSEWLREHEGEPFTAIVDGANVAYAGHGNVHYSQVQLVVDKLEDMGEKVLVVMP 520
Query: 443 SKRMPLVILHKGRVSGGPAQIPKNKKLLDIWR---DGGALYTTPPGSNDDWYWLYATV-- 497
SK + K V+G + +++ + I D G +Y P DD+YW+ A+V
Sbjct: 521 SK----YVGEKFYVAGIDSVQQLSEREVGIMNGLLDEGKMYQVPAACLDDYYWMLASVAN 576
Query: 498 ------------------NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVS--- 536
+ +LVTND+MRDH LL F RW H + +
Sbjct: 577 QTEHQLHVSIDNRQRRFPGLRPMLVTNDQMRDHKLALLEKRLFRRWTSCHIVNYDLESYS 636
Query: 537 ------RDGLNLLMPPPYSIVIQESENGS------WHVPV 564
RD + + +S IQ +E G WH PV
Sbjct: 637 ENEWQDRD-VRFVPTDFFSREIQGNEVGGERSSTVWHYPV 675
>gi|195130621|ref|XP_002009750.1| GI15064 [Drosophila mojavensis]
gi|193908200|gb|EDW07067.1| GI15064 [Drosophila mojavensis]
Length = 537
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/257 (23%), Positives = 113/257 (43%), Gaps = 25/257 (9%)
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASS------LSNLACQREVRSDFNK 397
+ +V T+++ G C +C + L + I + S + N Q+ + +
Sbjct: 287 RLQVTTTRLELFGKCSTCQQNLQHVAISDAQFAELRESFLQKVLIRNDVFQKTTPQELQR 346
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
F++++ + P+D VIDG NV + QL ++ + + +R +++L + +S
Sbjct: 347 FKQYVEKTAPYDCVIDGLNVAYSTGNKKPPAQLAKLLATVVRYFKERRKRVLVLGRQHMS 406
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQ 515
+K + + +++ T ++DD + LYAT+ + + D MR H
Sbjct: 407 NW------SKPAMQYIQSNASVFLTNNLTHDDPFLLYATLRSGQDTDFFSRDLMRAHA-H 459
Query: 516 LLGT---SFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGS-WHVPVITG---- 567
LLGT + F RW+++HQ L +++ P + + G+ WHVP
Sbjct: 460 LLGTELKAIFRRWQQEHQYSLVTQTQTGQIIVKEPIRYRLSAHKVGNVWHVPYCEAYTAN 519
Query: 568 --DDLEAPRQWLCATRA 582
D E P +WLC T A
Sbjct: 520 PPDSFEVPEKWLCITIA 536
>gi|426376679|ref|XP_004055121.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2
[Gorilla gorilla gorilla]
Length = 488
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 37 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 92
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 93 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 138
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 139 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 197
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 198 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESV---------------------P 236
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ-- 388
G W GQ T + ++G C C + + I + P E E + +
Sbjct: 237 GKQWKGQF-----------TTVRKSGRCSGCGKTIESIQLSPEEYECLKGKIMKDVIEGG 285
Query: 389 ----REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
+ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 286 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 341
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 342 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 399
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 400 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQHILSYDTVVQTT 457
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 458 GD-SWHIPYDEDLVERCSYEVPTKWLC 483
>gi|348516029|ref|XP_003445542.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Oreochromis
niloticus]
Length = 617
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 90/402 (22%), Positives = 163/402 (40%), Gaps = 72/402 (17%)
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A ++++++K P R+YG + + G+T A+ + + ++G+ P + L K
Sbjct: 251 ALNILQELKKESSPSS-RNYGDIIAAAMQHGDTSTAWALYDELIDNGLSPHQETWETLFK 309
Query: 269 LS------------VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVL 316
++ A++ ++ IL +R +S I+ WF+S+
Sbjct: 310 VAGKKEGEEGTSAKSQAEQQERHLGILLHMRNNQIYPQQSFASSIKSWFESLT------- 362
Query: 317 NWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETE 376
GQ W +G W T GVC SC L I + E +
Sbjct: 363 -------------------GQEW--TGNW----TTATPKGVCRSCGSELESIQLTAEEYQ 397
Query: 377 NFASS-LSNLACQREVRS-----DFNKFQEWLGRHGPFDAVIDGANVGLVNQ-HNFSFYQ 429
++++ ++V + + +F+ ++ R FD V+DG NV +N+ +
Sbjct: 398 QLKDRVMTDIIEGQDVFTKTTPEELQRFKLFVKRKPVFDVVVDGLNVANINKDKSKQSAT 457
Query: 430 LNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDD 489
L VV+ L R L +L GR ++ +++ + + T S DD
Sbjct: 458 LLVVVSEL-----VDRQGLTVLVLGRKHMLRPSRSWDRHNMNLIQQKAHCFFTDNISEDD 512
Query: 490 WYWLYATVN----CKSLLVTNDEMRDHLFQLLGTS---FFPRWKEKHQIRLS---VSRDG 539
+ LYAT++ C+ V+ D MRDH L + F +W+ HQ+ + +
Sbjct: 513 PFLLYATLHSGNHCR--FVSRDLMRDHKACLPDGATRRLFFKWQRGHQLVVDGHVTAGRR 570
Query: 540 LNLLMPPPYSIVIQESENGSWHVPVITGDD---LEAPRQWLC 578
+ P Y ++Q S SWH+P +D E P+ WLC
Sbjct: 571 VRFQSIPSYDTIVQTSGGNSWHIPYDDTEDRSTYEVPQHWLC 612
>gi|332842138|ref|XP_001138582.2| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 3 [Pan
troglodytes]
Length = 488
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 109/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 37 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 92
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 93 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 138
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 139 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 197
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 198 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESV---------------------P 236
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C +C + + I + P E E +
Sbjct: 237 GKQWKGQF-----------TTVRKSGQCSACGKTIESIQLSPEEYECLKGKIMRDVIDGG 285
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 286 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----Q 341
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 342 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 399
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 400 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-T 456
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
SWH+P ++ E P +WLC
Sbjct: 457 TGDSWHIPYDEDLVERCSYEVPTKWLC 483
>gi|62988276|ref|NP_055487.2| mitochondrial ribonuclease P protein 3 isoform 1 precursor [Homo
sapiens]
gi|221222466|sp|O15091.2|MRRP3_HUMAN RecName: Full=Mitochondrial ribonuclease P protein 3;
Short=Mitochondrial RNase P protein 3; Flags: Precursor
gi|21595091|gb|AAH32221.1| KIAA0391 [Homo sapiens]
gi|28071000|emb|CAD61881.1| unnamed protein product [Homo sapiens]
gi|119586282|gb|EAW65878.1| KIAA0391, isoform CRA_a [Homo sapiens]
gi|119586284|gb|EAW65880.1| KIAA0391, isoform CRA_a [Homo sapiens]
gi|119586288|gb|EAW65884.1| KIAA0391, isoform CRA_a [Homo sapiens]
Length = 583
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 109/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVP--------------------- 331
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C C + + I + P E E +
Sbjct: 332 GKQWKGQF-----------TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 380
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 381 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 436
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 437 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 494
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 495 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 552
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 553 GD-SWHIPYDEDLVERCSCEVPTKWLC 578
>gi|347966896|ref|XP_003435980.1| AGAP001968-PB [Anopheles gambiae str. PEST]
gi|333469851|gb|EGK97433.1| AGAP001968-PB [Anopheles gambiae str. PEST]
Length = 536
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 116/269 (43%), Gaps = 37/269 (13%)
Query: 346 RVERTQIDENGVCCSCNERLVCIDIDP------RETENFASSLSNLACQREVRSDFNKFQ 399
RV+ T+I + G C SC L I + R+ A ++ R + N+FQ
Sbjct: 269 RVQETRITDGGKCSSCKGTLSSIVVSEDMFQSLRDKFLTAVLINKEIFNRTTPEELNRFQ 328
Query: 400 EWLGRHGPFDAVIDGANVGLV--NQHNFSFYQLNTVVNRLRQMSPSKRMPLVI----LHK 453
+L + P+D VIDG NV NQ + Y V +R K+ LVI + K
Sbjct: 329 AFLAKTLPYDVVIDGLNVAFSSGNQKSPIVYA-QQVAAVVRHYVRQKKRVLVIGRKHMDK 387
Query: 454 GRVSGGPAQIPKNKKL-----LDIWRDG----GALYTT--PPGSNDDWYWLYATVNC--K 500
R S I +N L L +W G Y T P S DD + LYA + K
Sbjct: 388 WR-SREMKYIRENSFLFLTDDLYVWVSGLLESTVTYFTFAPFRSQDDPFLLYAALESGPK 446
Query: 501 SLLVTNDEMRDHLFQLLGTSF---FPRWKEKHQIR-LSVSRDGLNLLMPP-PYSIVIQES 555
+ + D MR H F +LG F RW+++HQ LS+ DG L+ P Y + +S
Sbjct: 447 TDFFSRDLMRKHSF-MLGNELSGVFKRWQQEHQYSLLSIMPDGRVLIKAPFKYELYAHKS 505
Query: 556 ENGSWHVPVITGD----DLEAPRQWLCAT 580
+ WHVP++ +E WLC +
Sbjct: 506 CDNRWHVPLVELGYRIPKVEKQNDWLCLS 534
>gi|375493516|ref|NP_001243608.1| mitochondrial ribonuclease P protein 3 isoform 3 [Homo sapiens]
Length = 488
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 109/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 37 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 92
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 93 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 138
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 139 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 197
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 198 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESV---------------------P 236
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C C + + I + P E E +
Sbjct: 237 GKQWKGQF-----------TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 285
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 286 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 341
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 342 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 399
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 400 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 457
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 458 GD-SWHIPYDEDLVERCSCEVPTKWLC 483
>gi|410962049|ref|XP_003987589.1| PREDICTED: LOW QUALITY PROTEIN: mitochondrial ribonuclease P
protein 3 [Felis catus]
Length = 582
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 107/495 (21%), Positives = 196/495 (39%), Gaps = 83/495 (16%)
Query: 110 KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSN 168
++ C DV ++L + A++NGI YN+L+ Y+ C SE D
Sbjct: 146 QMAHCHSSIDVAKSLLAWVAAKNNGIV----GYNLLVKYLYLCVFHKHISEVIDV----- 196
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+EI + +++P +T + + + + + A L++ +K IP K ++Y
Sbjct: 197 ------YEIMKARYK-RLEP--GGYTLLIQGLIHSDRWKEALLLLEDIKKVMIPSK-KNY 246
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV---DAKKVDKVYEILHR 285
+ G + + A+ + + ++P L A D + +K+++IL
Sbjct: 247 NDCIEGALLHQDVNLAWNLYQELLGHNLIPMLKTLKAFFDFGKNIKDDQYSNKLFDILLY 306
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW 345
LR ES I+ WF+SV + W
Sbjct: 307 LRNNHLYPGESFAHSIKTWFESVPGEQ--------------------------------W 334
Query: 346 RVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ------REVRSDFNKFQ 399
+ + T I +G C C + + + + P E E + + + +FQ
Sbjct: 335 KGQFTTIQGSGQCSGCGKTIESLHLSPEEYEFLKEKIMRDVIDGGDQYXKTTPQELERFQ 394
Query: 400 EWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGG 459
++ PFD VIDG NV L VV++L + + + L++L + +
Sbjct: 395 NFVKCCPPFDIVIDGLNVAKTFPKARESQVLLHVVSQLAK----QNLQLLVLGRKHMLTQ 450
Query: 460 PAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH--- 512
++ K++ + + + + S DD + LYAT+ +CK +T D MRDH
Sbjct: 451 HSRWRKDE--MKKVQKQASCFFADNISADDPFLLYATLHSGNHCK--FITKDLMRDHKAC 506
Query: 513 LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMP--PPYSIVIQESENGSWHVP----VIT 566
L F +W++ HQ+ + G + P Y V+Q + + SWH+P ++
Sbjct: 507 LHDAKTQRLFFKWQQGHQLAIINRLPGSKITFQHIPSYDTVVQTTGD-SWHIPYDEDLLE 565
Query: 567 GDDLEAPRQWLCATR 581
E P +WLC R
Sbjct: 566 RYSYEVPTKWLCLHR 580
>gi|307197003|gb|EFN78378.1| Uncharacterized protein KIAA0391 [Harpegnathos saltator]
Length = 535
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 116/252 (46%), Gaps = 32/252 (12%)
Query: 345 WRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL-------SNLACQREVRSDFNK 397
W T I + G C C+ +L + + ++ ++ SN+ + + + K
Sbjct: 285 WSAAPTYISKGGKCSKCSMQLSDLSFNQNIFQDLVNAFMKKVIVGSNIYYKSHPK-ELEK 343
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
F E++ R P+D VIDG NV + + NT+V+ ++ K+ LV+ K +
Sbjct: 344 FIEFIARTKPYDVVIDGLNVTYAMTKGVA--KPNTLVDVVKYFVKRKQKVLVLTRKHQ-- 399
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQ 515
K +L+ + ++ T S+DD Y LYAT+ K++ V++D MR H +
Sbjct: 400 -------KKLSVLEYIQKYAFVFWTNNLSSDDPYILYATLASGEKAIFVSSDLMRQHKY- 451
Query: 516 LLGTSF----FPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVIT----- 566
LLG + F +W+ HQ + S + ++ P + Q++ N SWH+P ++
Sbjct: 452 LLGDNRLQWEFKKWQCSHQYFVRSSGNQFKIISPFNFMPHAQKNSN-SWHIPYLSDTSTN 510
Query: 567 GDDLEAPRQWLC 578
+ E P +W C
Sbjct: 511 AETYEFPDKWYC 522
>gi|397567103|gb|EJK45394.1| hypothetical protein THAOC_35992 [Thalassiosira oceanica]
Length = 438
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 142/360 (39%), Gaps = 88/360 (24%)
Query: 264 SALLKLSVDAKKVDKVYEILHRLRTLVR-QVSESTF-----KIIEDWFDSVD------AA 311
S +LKL + + +D + HR+RT R ++ E T+ + ++ + +VD A+
Sbjct: 27 SPILKLYCEQRDIDSALRLYHRMRTTSRVKMDECTYCNFISAVAQERYFAVDGNRLLGAS 86
Query: 312 EIG-------VLNWDVSKVREGIVRGGG------------GWHGQGWLGSGKWRVERTQI 352
++G LN +S + E ++ G+H G + R I
Sbjct: 87 DLGYPESGPDFLNALLSDMAEDVLEISSESAEVLQIGFAYGFHASGDVEG--LSCSRVTI 144
Query: 353 DENGVCCSCNERLV-CIDIDPRETENFASSLSNLACQR---------------------- 389
DEN C + ++ I ++P + + +L +A ++
Sbjct: 145 DENTAKCPMTDAILRLITLEPAQRNHVRDTLIKMAREKSLEYTAKLTAQGRGPRDEDEKA 204
Query: 390 -EVRSDFNKFQEWLG-RHG-PFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMS--PSK 444
E KF E L R G PF A++DGANV + +QL VN L+ P
Sbjct: 205 EEATRMLAKFSERLDTREGKPFTAIVDGANVAYFGFGKVNLHQLMHAVNALQDQGEHPLV 264
Query: 445 RMPLVILHKG-RVSGGPAQIPKNKKL--LDIWRDGGALYTTPPGSNDDWYWLYATVN--- 498
PL K + G Q+ ++L L ++ G LY PP DD YW+ A+V+
Sbjct: 265 VFPLKYTRKSFHLRYGVVQVLGEEELGLLQDLKERGLLYVVPPMCLDDLYWMLASVSDQT 324
Query: 499 ---------------------CKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR 537
+ +++TND MRDH +LL F RW H + + ++
Sbjct: 325 TSRKGVSIDVPKHDNSGRFPGLRPMVITNDRMRDHKLELLDERAFRRWCCSHIVNYNFTQ 384
>gi|355736111|gb|AES11892.1| hypothetical protein [Mustela putorius furo]
Length = 395
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 94/429 (21%), Positives = 167/429 (38%), Gaps = 64/429 (14%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++++ M T +T + + V + + A L++ +K IP +R+Y + G
Sbjct: 8 IDVYEIMKTRYKRLEPGAYTLLIQGLVHSDRWKEALLLLEDVKKVLIPS-VRNYNDCIEG 66
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALL---KLSVDAKKVDKVYEILHRLRTLVR 291
+ A+ + + + P L A K D + +K+ +IL LR
Sbjct: 67 ALLHQDVSLAWNLYQELLGHDLTPMLKTLKAFFDFGKNVKDKQYSNKLLDILLYLRNNHL 126
Query: 292 QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQ 351
ES I+ WF+SV G W GQ
Sbjct: 127 YPEESFAHSIKTWFESV---------------------PGEQWKGQF-----------IT 154
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRH 405
I E+G C C + + I + P E E + ++ + +FQ ++
Sbjct: 155 IKESGQCSGCGKTMESIHLSPEEYEFLKGEIMRDVIDGGDQYKKTTPQELKRFQSFVKCC 214
Query: 406 GPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPK 465
PFD VIDG NV F + + V+ + + + L++L + + ++ K
Sbjct: 215 PPFDIVIDGLNVA----KTFPKVRESQVLLDVVSQLAKQNLQLLVLGRKHMLTQHSRWRK 270
Query: 466 NKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLG 518
++ + + + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 271 DE--MKKVQQQASCFFADNISEDDPFLLYATLHSGNHCK--FITKDLMRDHKACLRNAKT 326
Query: 519 TSFFPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEA 572
F +W++ HQ+ + ++R + P Y+ V+Q + SWH+P + E
Sbjct: 327 QRLFFKWQQGHQLAIVNRLTRSKITFQHIPSYNTVVQ-TTGDSWHIPYDEDTVERYTYEV 385
Query: 573 PRQWLCATR 581
P +WLC R
Sbjct: 386 PTKWLCLHR 394
>gi|355693219|gb|EHH27822.1| hypothetical protein EGK_18112 [Macaca mulatta]
Length = 581
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 107/483 (22%), Positives = 190/483 (39%), Gaps = 83/483 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 154 DVAKSLLAWVAAKNNGIV----SYDLLVGYLYLCVFHMQTSEVID--------------V 195
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M T ++ + + + + + L++ +K I P ++Y + G
Sbjct: 196 FEIMKTRYKTLEPGGYSLLIQGLIHSDRWRESLLLLEDIKKV-ITPSKKNYNDCIQGALL 254
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + VP L A D K +K+ +IL LR
Sbjct: 255 HQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 314
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + +
Sbjct: 315 ESFAHSIKTWFESVP---------------------GKQWKGQF-----------TTVQK 342
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P E E + ++ + +F+ ++ PF
Sbjct: 343 SGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTTPQELKRFENFVKSCPPF 402
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + Q K+ +
Sbjct: 403 DIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLRLLVLGRKHMLRQSFQWRKD-E 457
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDHLFQLLGTS---F 521
+ ++ + + S DD + LYAT+ +C+ +T D MRDH L T
Sbjct: 458 MAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDTKTQRL 514
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P V+ E P +
Sbjct: 515 FFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDVVERYSYEVPTK 573
Query: 576 WLC 578
WLC
Sbjct: 574 WLC 576
>gi|380818312|gb|AFE81030.1| mitochondrial ribonuclease P protein 3 precursor [Macaca mulatta]
Length = 581
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 107/483 (22%), Positives = 190/483 (39%), Gaps = 83/483 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 154 DVAKSLLAWVAAKNNGIV----SYDLLVGYLYLCVFHMQTSEVID--------------V 195
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M T ++ + + + + + L++ +K I P ++Y + G
Sbjct: 196 FEIMKTRYKTLEPGGYSLLIQGLIHSDRWRESLLLLEDIKKV-ITPSKKNYNDCIQGALL 254
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + VP L A D K +K+ +IL LR
Sbjct: 255 HQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 314
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + +
Sbjct: 315 ESFAHSIKTWFESVP---------------------GKQWKGQF-----------TTVQK 342
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P E E + ++ + +F+ ++ PF
Sbjct: 343 SGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTTPQELKRFENFVKSCPPF 402
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + Q K+ +
Sbjct: 403 DIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLRLLVLGRKHMLRQSFQWRKD-E 457
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDHLFQLLGTS---F 521
+ ++ + + S DD + LYAT+ +C+ +T D MRDH L T
Sbjct: 458 MAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDTKTQRL 514
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P V+ E P +
Sbjct: 515 FFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDVVERYSYEVPTK 573
Query: 576 WLC 578
WLC
Sbjct: 574 WLC 576
>gi|195402009|ref|XP_002059603.1| GJ14858 [Drosophila virilis]
gi|194147310|gb|EDW63025.1| GJ14858 [Drosophila virilis]
Length = 541
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 116/251 (46%), Gaps = 25/251 (9%)
Query: 350 TQIDENGVCCSCNERLVCIDIDPRE----TENFASS--LSNLACQREVRSDFNKFQEWLG 403
T++D G C +C + L + I + E+F + + N Q+ + +F++++
Sbjct: 294 TRLDRMGKCGACQQHLQHVAISDAQFAELRESFLAKVLIRNDVFQKSTPQEVARFKQYVE 353
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
+ P+D VIDG NV + QL ++ + + +R +++L + +
Sbjct: 354 QTAPYDCVIDGLNVAYSTGNKKPPQQLAKLLATVVRYFKERRKRVLVLGRQHMRNW---- 409
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGT-- 519
++ + ++ +++ T ++DD + LYAT++ + + D MR H F LLG+
Sbjct: 410 --SRPAMQYIQNNASVFLTNNLTHDDPFLLYATLHSGQDTDFFSRDLMRSHAF-LLGSEL 466
Query: 520 -SFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGS-WHVP------VITGDDLE 571
+ F RW+++HQ L +++ P + + G+ WHVP V + E
Sbjct: 467 KAIFRRWQQEHQYSLVTQTQTGQIIVKEPIRYRLSAHKVGNVWHVPCCEVYTVNPSESFE 526
Query: 572 APRQWLCATRA 582
P +WLC + A
Sbjct: 527 VPEKWLCLSIA 537
>gi|344274188|ref|XP_003408900.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Loxodonta
africana]
Length = 585
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 110/489 (22%), Positives = 190/489 (38%), Gaps = 88/489 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C + SE D +
Sbjct: 157 DVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVFHKQKSEIID--------------V 198
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M A ++ + R + + A L++ + IP K R+Y + G
Sbjct: 199 YEIMKVRYKILEPAGYSLLIRGLIHTDRWREALLLLEDFEKVMIPSK-RNYDDCIQGALL 257
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A D K +K+ +IL LR
Sbjct: 258 HQDVNTAWNLYQKLLGHDLIPMLETLEAFFDFGKDIKDHQYANKLLDILLYLRNNQLYPG 317
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T I +
Sbjct: 318 ESFAHSIKAWFESV---------------------PGEQWKGQF-----------TTIRK 345
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRH-GP 407
+G C C + + I + P E E ++ ++ + +FQ ++ P
Sbjct: 346 SGRCSGCGKTMESIYLSPEEYEFLKENIMRNVIDGGDQYKKTTPEELKRFQNFVNNDCPP 405
Query: 408 FDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
FD VIDG NV + + ++N + Q++ LV+ K ++ P K
Sbjct: 406 FDIVIDGLNVAKMFPKA---RESQVLLNVVSQLAKQNLRLLVLGRKHMLNQHPRW---RK 459
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
++ + + + S DD Y LYAT+ +CK +T D MRDH L
Sbjct: 460 DEMEKVQKQASCFFADDISEDDPYLLYATLHSGNHCK--FITKDLMRDHKACLPDAKTQR 517
Query: 521 FFPRWKEKHQI----RLSVSRDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEA 572
F +W++ HQ+ R S+ ++ Y V+Q + + SWH+P ++ E
Sbjct: 518 LFFKWQQGHQLAIINRFPGSKISFQHIL--SYDTVVQTTGD-SWHIPYDEDLVERYSYEV 574
Query: 573 PRQWLCATR 581
P +WLC R
Sbjct: 575 PNKWLCLHR 583
>gi|389602885|ref|XP_001567991.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505639|emb|CAM40753.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 705
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 105/463 (22%), Positives = 169/463 (36%), Gaps = 105/463 (22%)
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK--AYE 246
E + + RL D + A ++ ++ G+ +LRS A +C G D+ A+
Sbjct: 101 TEHVLSVILRLQCVAGDRDGATRMIAYLEQHGLL-RLRS-ASAFLQYCCGGLRDRRLAFA 158
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKK-VDKVYEILHRLRTLVRQVSESTFK-IIEDW 304
V + + EP+ AL L V ++ + ++ +L +R V +VSE + ++E W
Sbjct: 159 VYEAALKHKIELTEPDYVALGLLCVQVREPIRTLFFMLQEMREHVAEVSEKMVREVLEPW 218
Query: 305 FDSVDA-AEIGVLNWDVS-----------------KVREGIVRGGGGWHGQGWLGSGKWR 346
+ A +G+ V V G G
Sbjct: 219 VRMANEDATVGLRPRGVQTSLRLHRVDDMHHVLQLSVASPPPSTGASARGTVSASDSAAA 278
Query: 347 VERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRS-----DFNKFQEW 401
T GVC +C +L + L+ L R R+ F ++ +
Sbjct: 279 APPTGTQVCGVCPACQAKLSGYPFTAACRSHLLRELTELIIPRACRNRRAVLGFEHWKRY 338
Query: 402 LGRHGPFDA------VIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRM--------- 446
+ H DA IDGAN+G N+ Y L L + P R+
Sbjct: 339 M--HARLDAGDLVDVFIDGANLGYYGLSNW--YDLAKKQLMLHRGVPESRITGNDLDFNA 394
Query: 447 ---------------------------------PLVILHKGRVSGGPAQIPKNKKLLDIW 473
PLV+LH+ V ++ ++ W
Sbjct: 395 QCQSTGRGVDVGVNFELIDAAVTLAVDTYGMHRPLVMLHERHVEP-KFMTSQSTAIVQRW 453
Query: 474 RDGGALYTTPPGSNDDWYWLY------------------ATVNC-KSLLVTNDEMRDHLF 514
+D G LY +P G NDD WLY A+V+ ++ + TND+MRDH F
Sbjct: 454 KDRGWLYCSPTGLNDDLCWLYGALLLTDPTDTTPTPVTAASVSSHRTFVCTNDKMRDHHF 513
Query: 515 QLLGTSFFPRWKEKHQIRLSVSRDG----LNLLMPPPYSIVIQ 553
+LL F RW+++H+I +R G L+ +P PY IQ
Sbjct: 514 RLLSPRAFTRWRDRHRIAFRCARVGDRTELHWELPVPYERCIQ 556
>gi|363734112|ref|XP_421241.2| PREDICTED: mitochondrial ribonuclease P protein 3 [Gallus gallus]
Length = 591
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 106/254 (41%), Gaps = 28/254 (11%)
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL------SNLACQREVRSDFNK 397
KW+ T I ++G C CN +L ++ E N + ++ +F
Sbjct: 339 KWKGHLTNIKDSGQCPVCNHQLEDSELTEEEYNNLRERIIRDVIHGTDTFRKTSPQEFEA 398
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
FQ ++ PFD VIDG N+ + L VN L + L++L GR
Sbjct: 399 FQTFVENRLPFDIVIDGLNISHIMPRKVQCENLFEAVNCLAK----DYARLLVL--GRKH 452
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH- 512
++++ ++ + S DD + LYAT+ +CK VT D +RDH
Sbjct: 453 MLTNSFNWKREVMKEMQNKADFFFAENISEDDAFLLYATLRSGKHCK--FVTRDFLRDHK 510
Query: 513 --LFQLLGTSFFPRWKEKHQIRLSVSRDG--LNLLMPPPYSIVIQESENGSWHVPVITGD 568
L + F +W+ HQI S S G +N L Y V+Q + +WH+P
Sbjct: 511 ACLSDSVTRHLFRKWQRGHQIAFSPSAGGKHINFLPACSYDCVVQ-TTGDTWHIPYKDTF 569
Query: 569 D----LEAPRQWLC 578
+ + PR+WLC
Sbjct: 570 EEKYSYQIPRKWLC 583
>gi|397501121|ref|XP_003821243.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Pan paniscus]
Length = 488
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 107/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 37 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 92
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 93 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 138
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 139 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 197
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+S+
Sbjct: 198 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESI---------------------P 236
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C +C + + I + P E +
Sbjct: 237 GKQWKGQF-----------TTVRKSGQCSACGKTIESIQLSPEEYGCLKGKIMRDVIDGG 285
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 286 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----Q 341
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 342 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 399
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 400 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 457
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 458 GD-SWHIPYDEDLVERCSYEVPTKWLC 483
>gi|109083314|ref|XP_001085149.1| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 4
[Macaca mulatta]
Length = 581
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 106/483 (21%), Positives = 189/483 (39%), Gaps = 83/483 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 154 DVAKSLLAWVAAKNNGIV----SYDLLVRYLYLCVFHMQTSEVID--------------V 195
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M T ++ + + + + + L++ +K I P ++Y + G
Sbjct: 196 FEIMKTRYKTLEPGGYSLLIQGLIHSDRWRESLLLLEDIKKV-ITPSKKNYNDCIQGALL 254
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + VP L A D K +K+ +IL LR
Sbjct: 255 HQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 314
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + +
Sbjct: 315 ESFAHSIKTWFESVP---------------------GKQWKGQF-----------TTVQK 342
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P E E + ++ + +F+ ++ PF
Sbjct: 343 SGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTTPQELKRFENFVKSCPPF 402
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + Q K+ +
Sbjct: 403 DIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLRLLVLGRKHMLRQSFQWRKD-E 457
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
+ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 458 MAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQRL 514
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P V+ E P +
Sbjct: 515 FFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDVVERYSYEVPTK 573
Query: 576 WLC 578
WLC
Sbjct: 574 WLC 576
>gi|355778520|gb|EHH63556.1| hypothetical protein EGM_16548 [Macaca fascicularis]
Length = 581
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 106/483 (21%), Positives = 189/483 (39%), Gaps = 83/483 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 154 DVAKSLLAWVAAKNNGIV----SYDLLVGYLYLCVFHMQTSEVID--------------V 195
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M T ++ + + + + + L++ +K I P ++Y + G
Sbjct: 196 FEIMKTRYKTLEPGGYSLLIQGLIHSDRWRESLLLLEDIKKV-ITPSKKNYNDCIQGALL 254
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + VP L A D K +K+ +IL LR
Sbjct: 255 HQDINTAWNLYQELLGHDFVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 314
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + +
Sbjct: 315 ESFAHSIKTWFESVP---------------------GKQWKGQF-----------TTVQK 342
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P E E + ++ + +F+ ++ PF
Sbjct: 343 SGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTTPQELKRFENFVKSCPPF 402
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + Q K+ +
Sbjct: 403 DIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLRLLVLGRKHMLRQSFQWRKD-E 457
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
+ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 458 MAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQRL 514
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P V+ E P +
Sbjct: 515 FFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDVVERYSYEVPTK 573
Query: 576 WLC 578
WLC
Sbjct: 574 WLC 576
>gi|402875947|ref|XP_003901752.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 1 [Papio
anubis]
Length = 581
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 106/483 (21%), Positives = 188/483 (38%), Gaps = 83/483 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 154 DVAKSLLAWVAAKNNGIV----SYDLLVRYLYLCVFHMQTSEVID--------------V 195
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M +T + + + + + L++ +K I P ++Y + G
Sbjct: 196 FEIMKARYKTLELGGYTLLIQGLIHSDRWRESLLLLEDIKKV-ITPSKKNYNDCIQGALL 254
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + +VP L A D K +K+ +IL LR
Sbjct: 255 HQDINTAWNLYQELLGQDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 314
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + +
Sbjct: 315 ESFAHSIKTWFESVP---------------------GKQWKGQF-----------TTVQK 342
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P E E + + + +F+ ++ PF
Sbjct: 343 SGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKNTTPQELKRFENFIKSCPPF 402
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + Q K+ +
Sbjct: 403 DIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLRLLVLGRKHMLTQSFQWRKD-E 457
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
+ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 458 MAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQRL 514
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P V+ E P +
Sbjct: 515 FFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDVVERYSYEIPTK 573
Query: 576 WLC 578
WLC
Sbjct: 574 WLC 576
>gi|402875951|ref|XP_003901754.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 3 [Papio
anubis]
Length = 485
Score = 72.4 bits (176), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 106/483 (21%), Positives = 188/483 (38%), Gaps = 83/483 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 58 DVAKSLLAWVAAKNNGIV----SYDLLVRYLYLCVFHMQTSEVID--------------V 99
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M +T + + + + + L++ +K I P ++Y + G
Sbjct: 100 FEIMKARYKTLELGGYTLLIQGLIHSDRWRESLLLLEDIKKV-ITPSKKNYNDCIQGALL 158
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + +VP L A D K +K+ +IL LR
Sbjct: 159 HQDINTAWNLYQELLGQDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 218
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+SV G W GQ T + +
Sbjct: 219 ESFAHSIKTWFESV---------------------PGKQWKGQF-----------TTVQK 246
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P E E + + + +F+ ++ PF
Sbjct: 247 SGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKNTTPQELKRFENFIKSCPPF 306
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + Q K+ +
Sbjct: 307 DIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLRLLVLGRKHMLTQSFQWRKD-E 361
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
+ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 362 MAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQRL 418
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P V+ E P +
Sbjct: 419 FFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDVVERYSYEIPTK 477
Query: 576 WLC 578
WLC
Sbjct: 478 WLC 480
>gi|195340392|ref|XP_002036797.1| GM12478 [Drosophila sechellia]
gi|194130913|gb|EDW52956.1| GM12478 [Drosophila sechellia]
Length = 544
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 25/247 (10%)
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLG 403
T + G C SC + L + I E + QR + +F++++
Sbjct: 286 THLGALGKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVE 345
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
+ P+D VIDG NV + Q+ +V + + + +++L + +
Sbjct: 346 KTAPYDCVIDGLNVAYSTGTKKTPQQMAKLVATVVRHFREQDKRVLVLGREHMRNW---- 401
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGTSF 521
+K+ + +L+ T S+DD + LYAT+ ++ + D MR H F LGT
Sbjct: 402 --SKQAMHYVHSNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-LGTEL 458
Query: 522 FP---RWKEKHQIRL-SVSRDGLNLLMPPPYSIVIQESENGSWHVPVIT------GDDLE 571
P RW+++HQ L + ++ G ++ P + G+WHVP D E
Sbjct: 459 KPIFRRWQQEHQFSLVTQTQTGQIIVKEPVRHRLCAHQVAGTWHVPYCAQYTPHPTDSFE 518
Query: 572 APRQWLC 578
P WLC
Sbjct: 519 VPANWLC 525
>gi|397615332|gb|EJK63364.1| hypothetical protein THAOC_15979, partial [Thalassiosira oceanica]
Length = 1036
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 61/246 (24%)
Query: 349 RTQIDEN-GVC--CSCNERLVCIDIDPRE----------TENFASSLSNLACQREVRSDF 395
R +D + GVC S +RL+ + D R E F + R R +
Sbjct: 495 RVNLDRSTGVCPVTSAVQRLILLGPDERSRLHDDLLDLSAEQFEAFSREDGKGRYARDEL 554
Query: 396 NKFQEWLGRHG--PFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLV 449
F +WL R PF A+IDGANVG Q F+++Q+N +V L + PLV
Sbjct: 555 RSFSDWLARRTGRPFTAIIDGANVGYYMQSFDKGRFNYHQINYMVETLIDRGEN---PLV 611
Query: 450 IL----HKGRVSGGPAQIPKNKK----LLDIWRDGGALYTTPPGSNDDWYWLYATV---- 497
++ + R Q+ + + +++ + G +Y PP DD+YW+ A+V
Sbjct: 612 VVPGKYGRERFHSSHGQVQRLDREEVAIMNRLAEEGRMYRVPPRCLDDFYWMLASVSDQS 671
Query: 498 ---------------------------NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQ 530
+ +LVTND+MRDH +LL F RW H
Sbjct: 672 SSSSRGPEDGPSDLSFVPGDDPRGRFPGTRPMLVTNDQMRDHKLELLEPRLFRRWYGCHI 731
Query: 531 IRLSVS 536
+ S +
Sbjct: 732 VNYSFT 737
>gi|342183454|emb|CCC92934.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 565
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 48/209 (22%)
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGLVNQHNF-----------SFYQLNTVV-------- 434
+F F+E L +D VIDGANVG ++ S L+TV
Sbjct: 364 EFEDFKEVLSLLD-YDGVIDGANVGYYGLSSWYSEAKKKMLQASGADLSTVPEYDLCEVP 422
Query: 435 -------------NRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYT 481
+ LR+ ++ +++LH P + N + W+ AL
Sbjct: 423 FPVDVPPKFSLVDDMLREARRLRKNSVIMLHSRHFKSPPEE---NLPWIAKWKREKALVV 479
Query: 482 TPPGSNDDWYWLYATV---NCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRL----- 533
P NDD+ WL+A V NC L+ +ND+MRDH F L G SF RW+++H +R
Sbjct: 480 CPGFLNDDYCWLFAAVYRPNC--LVFSNDQMRDHHFTLSGRSFL-RWRQRHLVRYVARFN 536
Query: 534 -SVSRDGLNLLMPPPYSIVIQESENGSWH 561
+ L+L +P PY+I +Q + H
Sbjct: 537 PVIGTAALHLTLPRPYAIWVQRGKVSQSH 565
>gi|395504265|ref|XP_003756476.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Sarcophilus
harrisii]
Length = 580
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/387 (21%), Positives = 157/387 (40%), Gaps = 60/387 (15%)
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L++ +K P K R+YG + G + A+ + M ++P A +
Sbjct: 229 LLEDIKKIMSPSK-RNYGDCIKGALLHREMNLAWNLYFEMLNHRIIPNWETFQAFFDFAK 287
Query: 272 DAKKVD---KVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIV 328
K + ++ +IL LR +E + I+ WF+S+
Sbjct: 288 GVKNNEFERRLLDILLYLRNNQMYPNEPFAQSIKIWFESI-------------------- 327
Query: 329 RGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASS-LSNL-- 385
KW+ E I ++G C +C L I ++ E E L ++
Sbjct: 328 ------------PEKKWKGESVIIHKSGQCLACGRMLESIHLNSEEYEFLKQRVLKDILD 375
Query: 386 ---ACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSP 442
++ + N+F++++ PFD VIDG NV + + T+++ + Q++
Sbjct: 376 GGDQYRKTTPKEINRFEKFIKSCPPFDIVIDGLNVTKMFP---KIRESETLLDIVSQLT- 431
Query: 443 SKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--K 500
+ +++L + + G ++ KN+ + ++ + S DD + LYAT++ +
Sbjct: 432 KQNFQVLVLGRKHMLNGRSRWHKNE--MTAVQNMAYCFFADNVSEDDAFLLYATLHSGNQ 489
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F RW++ HQ+ G ++ Y+ V+Q +
Sbjct: 490 CRFLTRDLMRDHKACLTDEKTQQLFFRWQQGHQLVFLNYYPGKKIIFQSVLTYNTVVQ-T 548
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
SWH+P ++ E P +WLC
Sbjct: 549 TGDSWHIPYDENIVERYSYEVPTKWLC 575
>gi|350396203|ref|XP_003484477.1| PREDICTED: hypothetical protein LOC100740846 [Bombus impatiens]
Length = 473
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 21/191 (10%)
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
F ++ ++ P+D ++DG N+ +H F + V R+ + + ++I+ K V
Sbjct: 290 FINFIDKNKPYDIIVDGLNIMYRTKHGFR-KDIMDEVKRIFKSYEKQNKKILIIAKEHVK 348
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKS--LLVTNDEMRDHLFQ 515
A+I + GS DD + LYA + +++ D MR H+F
Sbjct: 349 KFIAKID---------LQSADCFYVENGSKDDVFLLYAAFASRKNGKIISKDLMRQHVFA 399
Query: 516 LLGTSF---FPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEA 572
L F +W+ HQ + V + + L P ++Q+ +N SWH+P + D +
Sbjct: 400 LQDVELNVLFKKWQLSHQFFIDVKKGFIQLNSLLPIDAIVQK-QNNSWHIPYVANDKISR 458
Query: 573 PRQ-----WLC 578
R W+C
Sbjct: 459 MRHTCTNDWMC 469
>gi|395838225|ref|XP_003792019.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2
[Otolemur garnettii]
Length = 566
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 103/486 (21%), Positives = 187/486 (38%), Gaps = 99/486 (20%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NG+ Y++L+ Y+ C ++SE D I
Sbjct: 155 DVAKSLLAWVAAKNNGLV----GYDLLVKYLYLCVFHKQTSEVID--------------I 196
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M + +T + R + A L++ MK IP + ++Y + G
Sbjct: 197 YEIMKARYKNLEPGAYTLLIRGLSHSDRWREALLLLEDMKKVTIPSR-KNYHDCIQGALL 255
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ D A+ + + ++P L A L D K +K+ +IL LR
Sbjct: 256 RQDVDIAWNLYQELLGHNLIPMLETLKAFFDLGKDIKDDYYSNKLQDILLYLRNNQLYPG 315
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF E
Sbjct: 316 ESFAHSIKTWF------------------------------------------------E 327
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C SC + + I++ P E E + ++ + F++++ PF
Sbjct: 328 SGQCSSCGKTIESIELSPEEYEFLTGKIMRDVIDGGDQYKKTTPWELRTFEKFVKSCPPF 387
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + F + + V+ L + + L++L + + ++ K++
Sbjct: 388 DIVIDGLNVAKM----FPKARESQVLLELVSQLAKQNLRLLVLGRKHMLKKSSRWRKDE- 442
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
+++ + + + S DD + LYAT+ +CK VT D MRDH L
Sbjct: 443 -MEMVQKQASCFFADDISKDDPFLLYATLHSGNHCK--FVTKDLMRDHKACLPDAKTQRL 499
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVPV----ITGDDLEAPRQ 575
F +W++ HQ+ + G ++ Y+ V+Q + + SWH+P + E P +
Sbjct: 500 FFKWQQGHQLAIRNKFPGSKMIFQHILSYNTVVQTTGD-SWHIPYDEDRVERYSYEVPTK 558
Query: 576 WLCATR 581
WLC R
Sbjct: 559 WLCLHR 564
>gi|168018631|ref|XP_001761849.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686904|gb|EDQ73290.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 892
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/323 (23%), Positives = 129/323 (39%), Gaps = 31/323 (9%)
Query: 13 RTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMH----SFTKPITDIKQNRFSADLTTGL 68
R + L K+ LP+M+ S+ T + C H + K +T +K++ S++
Sbjct: 311 RVEELIELLPKV-LPVMN-SDKGTASAFQCLGRHGKHQAAMKCLTSLKKSGGSSEQLN-- 366
Query: 69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYD 128
C+ + T + +++ R +P V +D C K G V L L D
Sbjct: 367 CSFVSYILGSSKAKKLEETLGLWRDVEEQCRINAPPEVFNILIDSCCKHGHVSWGLDLLD 426
Query: 129 DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL-KRGFEIFQQMITDKVD 187
+ + G LS + +N ++C + + G+ + FE+ M V
Sbjct: 427 EMQQRGTKLSPYAFNP--FIC---------------DFARWGMYEEAFEMKAAMGRLGVQ 469
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ T++++ V D E A++L+ +MK GI P Y P + GF D+A EV
Sbjct: 470 PSVVTYSTLVNCCVKLGDMEQAYNLLAEMKQVGIQPNAHCYNPLIMGFGSQARLDRALEV 529
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDS 307
M +GV P+ S L+ + DK E+ + Q + + + F
Sbjct: 530 LREMLSAGVQPDSYTYSMLIFACSMVRNEDKAVELFEEMLQRGVQPNAGIYSAMASVF-- 587
Query: 308 VDAAEIGVLNWDVSKVREGIVRG 330
A G L + V+E RG
Sbjct: 588 ---ARCGKLERSIEMVKEIERRG 607
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
AL + + S G+ + Y++L++ CS R D + E+F++M+
Sbjct: 526 ALEVLREMLSAGVQPDSYTYSMLIFACSMV----------RNED------KAVELFEEML 569
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
V PN ++++A + E + ++VK+++ G ++ L G G
Sbjct: 570 QRGVQPNAGIYSAMASVFARCGKLERSIEMVKEIERRGEVVGTKAKSAILAGLSLAGRLG 629
Query: 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+A + + G PE LL A +D+++ I R
Sbjct: 630 EALALYGALKREGAFPEAYAAGILLVAVGKAGDLDRMFNIFEDCR 674
>gi|260831350|ref|XP_002610622.1| hypothetical protein BRAFLDRAFT_65812 [Branchiostoma floridae]
gi|229295989|gb|EEN66632.1| hypothetical protein BRAFLDRAFT_65812 [Branchiostoma floridae]
Length = 523
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 16/200 (8%)
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGLV---NQHNFSFYQLNTVVNRLRQMSPSKRMPLVI 450
+ KF +++ +D V+DG NV Q +S L V + ++Q+ + +++
Sbjct: 328 ELKKFLDFIKDRNDYDVVVDGLNVAYAFGSKQKKYSRTLLKVVEHLVQQLG----LHVLV 383
Query: 451 LHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDE 508
L + + A + +D L+ T S DD Y L AT++C + ++ D
Sbjct: 384 LGRKHMKVTTAHGAWRRSDMDTIESLADLFLTDNVSKDDPYLLSATLSCGPHARFISGDF 443
Query: 509 MRDH--LFQLLGTSFFPRWKEKHQIR-LSVSRDGLNLLMPPPYSIVIQESENGSWHVPVI 565
MRDH L F +W HQ++ LS+S + IV+Q ++N +WH P
Sbjct: 444 MRDHKALLDNFVQRLFLKWLRGHQMKLLSISYGAPIFSDVHTFDIVVQRTQN-TWHFPYD 502
Query: 566 TGD---DLEAPRQWLCATRA 582
G+ LE P +WLC R
Sbjct: 503 DGEPRQGLEGPDKWLCVRRG 522
>gi|194763527|ref|XP_001963884.1| GF21257 [Drosophila ananassae]
gi|190618809|gb|EDV34333.1| GF21257 [Drosophila ananassae]
Length = 544
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 107/246 (43%), Gaps = 35/246 (14%)
Query: 356 GVCCSCNERLVCIDIDPRETENFASS------LSNLACQREVRSDFNKFQEWLGRHGPFD 409
G C SC + + I + + S + + QR + F++++ R P+D
Sbjct: 294 GKCQSCQQHFQPVAISDEQFRMLSESFLERVLIRSDVFQRSTPKEVASFKKFVDRTAPYD 353
Query: 410 AVIDGANVGLVNQHNFSFYQL----NTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPK 465
VIDG NV S QL TVV+ R+ +KR +L GR + +
Sbjct: 354 CVIDGLNVAYSTGTKKSPKQLAKLVATVVSHFREQ--NKR----VLVLGR------EHMR 401
Query: 466 N--KKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKS--LLVTNDEMRDHLFQL--LGT 519
N K+ + + +L+ T S+DD + LYAT+ S + D MR H F L
Sbjct: 402 NWCKQSMHYVQSNASLFLTNNLSHDDPFLLYATLKSGSDTDFFSRDLMRSHAFHLGPEMK 461
Query: 520 SFFPRWKEKHQIRL-SVSRDGLNLLMPPPYSIVIQESENGSWHVP---VIT---GDDLEA 572
F +W+++HQ L + ++ G ++ P ++ G+WHVP V T D E
Sbjct: 462 PIFRQWQQQHQFSLVTQTKTGKLIVKEPIRHRLVAHKVTGTWHVPYCEVYTPHPSDSFEV 521
Query: 573 PRQWLC 578
P WLC
Sbjct: 522 PPNWLC 527
>gi|390343387|ref|XP_784164.3| PREDICTED: mitochondrial ribonuclease P protein 3-like
[Strongylocentrotus purpuratus]
Length = 595
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 104/260 (40%), Gaps = 21/260 (8%)
Query: 338 GWLGSGK---WRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------Q 388
W S + W+V T+I GVC SC+ L + E N + + +
Sbjct: 340 NWFKSKQHETWKVSHTKISHTGVCKSCSSHLEPLQTSGEEFNNLREEIFSKVIRGKDIFR 399
Query: 389 REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPL 448
+ + + F +++ +D VIDG NV + + L V L +K++
Sbjct: 400 KTTPEELDAFMKFIDSGPSYDIVIDGLNVAKLKKRKSPGKVLRQFVEYL-----TKKLGY 454
Query: 449 VILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN--CKSLLVTN 506
L GR + K + + +D + T S DD + LYAT++ K+ V+
Sbjct: 455 SCLVLGRHHMLKQRNQFEKGDMAVIQDLADCFFTQNMSEDDPFMLYATMHSGTKTKYVSR 514
Query: 507 DEMRDH--LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPV 564
D +RDH L F +W+ Q+ R+G + + +S + SWH+P
Sbjct: 515 DLLRDHKALLSPEAHLSFIKWQRTQQLSPVDFREGKAIFKENLAHDTVIQSTDKSWHIPY 574
Query: 565 ITGD---DLEAPRQWLCATR 581
G E P WLCA +
Sbjct: 575 DDGQPRFSYEVPLTWLCAVK 594
>gi|195432522|ref|XP_002064272.1| GK20077 [Drosophila willistoni]
gi|194160357|gb|EDW75258.1| GK20077 [Drosophila willistoni]
Length = 528
Score = 69.3 bits (168), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 105/254 (41%), Gaps = 28/254 (11%)
Query: 346 RVERTQIDENGVCCSCNERLVCIDIDPRETENFASS------LSNLACQREVRSDFNKFQ 399
R + +Q++ G C C++ L + I + + S + + Q+ + +F+
Sbjct: 277 RGKSSQVNRLGKCLHCHQHLQPVAISDEQFQQLRESFLEKVLIRHDVFQKSTPEEVERFK 336
Query: 400 EWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGG 459
++ R P+D VIDG NV S QL +V + + +R +++L + +
Sbjct: 337 AYVERTLPYDCVIDGLNVAYSMGTKKSPAQLAQLVANVVRYFRERRKRVLVLGRQHMRQW 396
Query: 460 PAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLL 517
+K + + +L+ S+DD + LYAT+ + + D MR H LL
Sbjct: 397 ------SKSAMHYIQANASLFLAQNLSHDDPFLLYATLKSGQDTDFFSRDLMRSHA-HLL 449
Query: 518 GTSFFP---RWKEKHQIRLSVSRDGLNLLMPPPYSIVIQ----ESENGSWHVPVITG--- 567
G P RW+++HQ L +++ P + + SWHVP
Sbjct: 450 GPDLKPIFRRWQQEHQHSLVAQTQTGQIVVKEPIRFRLTAHHLREDEMSWHVPYCETYTP 509
Query: 568 ---DDLEAPRQWLC 578
D E P QWLC
Sbjct: 510 KPPDSFEIPEQWLC 523
>gi|270005388|gb|EFA01836.1| hypothetical protein TcasGA2_TC007438 [Tribolium castaneum]
Length = 489
Score = 69.3 bits (168), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 31/259 (11%)
Query: 340 LGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL-SNLACQREVRS----- 393
L S K V + I+ GVC SCN +L + E + + N+ ++V +
Sbjct: 236 LKSHKMLVRSSAINYKGVCKSCNSKLAQFHLTQSEFDEIKQKIIDNVIIGKDVYARTTAQ 295
Query: 394 DFNKFQEWLGRHGPFDAVIDGANV----GLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLV 449
+ +KF+ ++ + FD VIDG NV GL + + +VV
Sbjct: 296 ELSKFKNFVSKMPKFDVVIDGLNVAYSAGLKQPAQVTSGLVQSVVAHFVDQGKE------ 349
Query: 450 ILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTND 507
+L GR + P+N D ++ ++ T S DD Y LY ++ +++VT D
Sbjct: 350 VLLLGR--SHMNRWPRNN--WDYVKENATIFLTENLSQDDPYLLYCALHSGKDTIIVTKD 405
Query: 508 EMRDHLFQLLGTS---FFPRWKEKHQIRLSVSRDG--LNLLMPPPYSIVIQESENGS-WH 561
MR H F L F RW + Q +L +++G PP Y+ + Q +NG WH
Sbjct: 406 LMRGHKFLLKDVRLKILFDRWLSQRQYQLVFAKEGGDCTFKKPPNYTHLAQ--KNGPFWH 463
Query: 562 VPVITGDDLEAPRQ-WLCA 579
+P + + + WLC
Sbjct: 464 IPCKSENKFVTNKTYWLCV 482
>gi|170034795|ref|XP_001845258.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876388|gb|EDS39771.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 519
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 106/253 (41%), Gaps = 36/253 (14%)
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLG 403
++ ++G C C L I + + + + + + +FQ +L
Sbjct: 275 ARMTDSGKCSHCKSTLASIVVPEDQFQALRDAFIQAVIIKKDIFNKTTPKELERFQTFLA 334
Query: 404 RHGPFDAVIDGANVGLV--NQHNFSFY--QLNTVVNRLRQMSPSKRMPLVILHKGRVSGG 459
R P+D VIDG NV NQ + + Y QL VV R K+ LVI G
Sbjct: 335 RTKPYDVVIDGLNVAFSAGNQKSPAVYAMQLAAVV---RHYVRHKKRVLVI--------G 383
Query: 460 PAQIPK-NKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQL 516
+ + K + R+ L+ T S DD + LYA + ++ + D MR H F L
Sbjct: 384 RQHMDRWRSKDMKYIRENAFLFFTEDLSQDDPFLLYAALESGPRTDFFSRDLMRKHSF-L 442
Query: 517 LGT---SFFPRWKEKHQIRL-SVSRDGLNLLMPP-PYSIVIQE--SENGSWHVPVITG-- 567
LG + F RW+++HQ L S++ DG ++ P Y + E WH+P++
Sbjct: 443 LGDELGAVFKRWQQEHQFSLVSITPDGRVIIRSPFQYDLYAHSLPEEPSRWHIPLVDECL 502
Query: 568 --DDLEAPRQWLC 578
+E WLC
Sbjct: 503 KIHKVEKQATWLC 515
>gi|91080915|ref|XP_973846.1| PREDICTED: similar to SD17694p [Tribolium castaneum]
Length = 473
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 111/259 (42%), Gaps = 31/259 (11%)
Query: 340 LGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL-SNLACQREVRS----- 393
L S K V + I+ GVC SCN +L + E + + N+ ++V +
Sbjct: 220 LKSHKMLVRSSAINYKGVCKSCNSKLAQFHLTQSEFDEIKQKIIDNVIIGKDVYARTTAQ 279
Query: 394 DFNKFQEWLGRHGPFDAVIDGANV----GLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLV 449
+ +KF+ ++ + FD VIDG NV GL + + +VV
Sbjct: 280 ELSKFKNFVSKMPKFDVVIDGLNVAYSAGLKQPAQVTSGLVQSVVAHFVDQGKE------ 333
Query: 450 ILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTND 507
+L GR + P+N D ++ ++ T S DD Y LY ++ +++VT D
Sbjct: 334 VLLLGR--SHMNRWPRNN--WDYVKENATIFLTENLSQDDPYLLYCALHSGKDTIIVTKD 389
Query: 508 EMRDHLFQLLGTS---FFPRWKEKHQIRLSVSRDG--LNLLMPPPYSIVIQESENGS-WH 561
MR H F L F RW + Q +L +++G PP Y+ + Q +NG WH
Sbjct: 390 LMRGHKFLLKDVRLKILFDRWLSQRQYQLVFAKEGGDCTFKKPPNYTHLAQ--KNGPFWH 447
Query: 562 VPVITGDDLEAPRQ-WLCA 579
+P + + + WLC
Sbjct: 448 IPCKSENKFVTNKTYWLCV 466
>gi|194896203|ref|XP_001978433.1| GG19582 [Drosophila erecta]
gi|190650082|gb|EDV47360.1| GG19582 [Drosophila erecta]
Length = 545
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 95/430 (22%), Positives = 161/430 (37%), Gaps = 98/430 (22%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSFGIPPKLRSYG 229
+RG + + M P+ A ++++A A E P E+A+ L+++M + PPK Y
Sbjct: 173 QRGLPLLEMMKVTSA-PSVAAYSALAEKAFNVEAPQQELAWHLLEEMATARKPPKCEVY- 230
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L +L N E+ +P + LS LL+ ++ ++ + RL+ L
Sbjct: 231 --LTLLNRLAN------------ETAQLPAQ--LSRLLQF-LERHEILVSQRVAVRLQEL 273
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVER 349
RQV ++E +
Sbjct: 274 SRQVPH----LLE--------------------------------------------AQT 285
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLG 403
T + G C SC + L + I E + QR + +F++++
Sbjct: 286 TNLGPLGKCQSCQQHLQPVAISDEEFRRLSECFLERVLIRRDVFQRSTPEEVARFKKFVD 345
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQL-NTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQ 462
+ P+D VIDG NV + QL N V +R + LV+ G
Sbjct: 346 KTAPYDCVIDGLNVAYSTGTKKAPQQLANLVATVVRHFRDQDKRVLVL-------GREHM 398
Query: 463 IPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGTS 520
+K+ + +L+ T S+DD + LYAT+ ++ + D MR H F LG
Sbjct: 399 RNWSKQAMHFVHSNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-LGPE 457
Query: 521 FFP---RWKEKHQIRLSVSRDGLNLLMPPP--YSIVIQESE-NGSWHVPVIT------GD 568
P RW+++HQ L+ +++ P + + Q + +WHVP D
Sbjct: 458 LKPVFRRWQQQHQFSLATQTQTGQIIVKEPIRHRLGTQPGKVTDTWHVPYCEQYTQHPTD 517
Query: 569 DLEAPRQWLC 578
E P WLC
Sbjct: 518 SFEVPANWLC 527
>gi|17946134|gb|AAL49108.1| RE55427p [Drosophila melanogaster]
Length = 364
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 25/241 (10%)
Query: 356 GVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPFD 409
G C SC + L + I E + QR + +F++++ + P+D
Sbjct: 112 GKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVEKTAPYD 171
Query: 410 AVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKL 469
VIDG NV + QL +V + + + +++L + + +K+
Sbjct: 172 CVIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNW------SKQA 225
Query: 470 LDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGTSFFP---R 524
+ +L+ T S+DD + LYAT+ ++ + D MR H F LGT P R
Sbjct: 226 MHYVHCNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-LGTELKPIFRR 284
Query: 525 WKEKHQIRL-SVSRDGLNLLMPPPYSIVIQESENGSWHVPVIT------GDDLEAPRQWL 577
W+++HQ L + ++ G ++ P + +WHVP D E P WL
Sbjct: 285 WQQEHQFSLVTQTQTGQIIVREPVRHRLCAHQVADTWHVPYCAQYTPHPTDSFEVPANWL 344
Query: 578 C 578
C
Sbjct: 345 C 345
>gi|302768873|ref|XP_002967856.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
gi|300164594|gb|EFJ31203.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
Length = 731
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D CSK GD A +Y R GI Y ++ CS SS N
Sbjct: 229 IDACSKAGDGDSAYEVYTMMRKRGIGGCPEPYTAAVHACS------SSGN---------- 272
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+R F I+ M D V P+E F+++ +A + AFD++++++ + + P GP
Sbjct: 273 LERAFSIYDDMKKDGVKPDEIFFSALIDVAGHASKIDCAFDVLQEVEKYSLVP-----GP 327
Query: 231 ALF----GFCK-LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+F G C GN +KA + ++ G+ P L+AL+ K+ + L
Sbjct: 328 VIFSSLMGVCSNTGNWEKAIFLYENIQAVGIRPSVSTLNALMTALCRGKQFQNALQSLEE 387
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIV 328
L+ ++ T+ I+ + + + A I LN + +GIV
Sbjct: 388 LKEAGVSPNQLTYSILLEACEKENEAGIA-LNLYTHAIADGIV 429
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 83/177 (46%), Gaps = 17/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G++ +A +Y S I + +N L+ C + G+
Sbjct: 158 IDGCARTGELAKAFGIYRIMLSKKIKPDRVIFNSLINACG-RSGA--------------- 201
Query: 171 LKRGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+KR FE+F ++ ++ ++PN T S+ D + A+++ M+ GI Y
Sbjct: 202 VKRAFEVFTELKSENPINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRKRGIGGCPEPYT 261
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
A+ GN ++A+ + M + GV P+E SAL+ ++ A K+D +++L +
Sbjct: 262 AAVHACSSSGNLERAFSIYDDMKKDGVKPDEIFFSALIDVAGHASKIDCAFDVLQEV 318
>gi|224009498|ref|XP_002293707.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970379|gb|EED88716.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 992
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 96/233 (41%), Gaps = 63/233 (27%)
Query: 355 NGVC--CSCNERLVCIDIDPRET------ENFASSLSNLACQREVRS------DFNKFQE 400
+G+C +RL+ ++ D R+ E L+N A ++E S F
Sbjct: 635 SGICPVTKSQQRLIVLEPDQRKQLHDDLLELSKVQLANFAGKKEGESTERAAEQLQIFSN 694
Query: 401 WLG-RHG-PFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMPLVIL--- 451
WL R G PF A++DGAN+G Q F+++Q+ + + L + PLV++
Sbjct: 695 WLNTREGEPFTAIVDGANIGYFMQSFDKGRFNYHQIKFMCDTLEARGEN---PLVVIPNK 751
Query: 452 ---------HKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN---- 498
K P +I K++ R G LY PP DD YW+ ++V+
Sbjct: 752 YGYNEFYSSKKEYQKLDPVEI----KIMKDLRSQGKLYQVPPRCLDDLYWMLSSVSDQTV 807
Query: 499 --------------------CKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQI 531
+ +LV+ND+MRDH +LL F RW H +
Sbjct: 808 SRGGRDLSVPSNDPSGRWPGTRPMLVSNDQMRDHKLELLEPRLFRRWYGCHMV 860
>gi|24640102|ref|NP_572309.2| CG15896, isoform A [Drosophila melanogaster]
gi|386763916|ref|NP_001245549.1| CG15896, isoform B [Drosophila melanogaster]
gi|7290700|gb|AAF46147.1| CG15896, isoform A [Drosophila melanogaster]
gi|383293244|gb|AFH07263.1| CG15896, isoform B [Drosophila melanogaster]
Length = 544
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 25/241 (10%)
Query: 356 GVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPFD 409
G C SC + L + I E + QR + +F++++ + P+D
Sbjct: 292 GKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVEKTAPYD 351
Query: 410 AVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKL 469
VIDG NV + QL +V + + + +++L + + +K+
Sbjct: 352 CVIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNW------SKQA 405
Query: 470 LDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGTSFFP---R 524
+ +L+ T S+DD + LYAT+ ++ + D MR H F LGT P R
Sbjct: 406 MHYVHCNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-LGTELKPIFRR 464
Query: 525 WKEKHQIRL-SVSRDGLNLLMPPPYSIVIQESENGSWHVPVIT------GDDLEAPRQWL 577
W+++HQ L + ++ G ++ P + +WHVP D E P WL
Sbjct: 465 WQQEHQFSLVTQTQTGQIIVKEPVRHRLCAHQVADTWHVPYCAQYTPHPTDSFEVPANWL 524
Query: 578 C 578
C
Sbjct: 525 C 525
>gi|54650516|gb|AAV36837.1| SD17694p [Drosophila melanogaster]
Length = 544
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 100/241 (41%), Gaps = 25/241 (10%)
Query: 356 GVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPFD 409
G C SC + L + I E + QR + +F++++ + P+D
Sbjct: 292 GKCQSCQQHLQPVAISDEEFRQLSECFLERVLIRRDVFQRSTPEEVARFKKFVEKTAPYD 351
Query: 410 AVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKL 469
VIDG NV + QL +V + + + +++L + + +K+
Sbjct: 352 CVIDGLNVAYSTGTKKTPQQLAKLVATVVRHFREQDKRVLVLGREHMRNW------SKQA 405
Query: 470 LDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLFQLLGTSFFP---R 524
+ +L+ T S+DD + LYAT+ ++ + D MR H F LGT P R
Sbjct: 406 MHYVHCNASLFLTSNLSHDDPFLLYATLRSGQETDFFSRDLMRSHAFH-LGTELKPIFRR 464
Query: 525 WKEKHQIRL-SVSRDGLNLLMPPPYSIVIQESENGSWHVPVIT------GDDLEAPRQWL 577
W+++HQ L + ++ G ++ P + +WHVP D E P WL
Sbjct: 465 WQQEHQFSLVTQTQTGQIIVKEPVRHRLCAHQVADTWHVPYCAQYTPHPTDSFEVPANWL 524
Query: 578 C 578
C
Sbjct: 525 C 525
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 82/173 (47%), Gaps = 21/173 (12%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL--- 171
S+ G+ EAL L+ + RS + S YN L+ C+ G+ G +++ GL
Sbjct: 358 SRLGNFAEALLLFSELRSKNLVPSVVTYNTLID-GGCRTGNLDIAKGMKDDMIKHGLCPD 416
Query: 172 -------KRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
RGF E+F +M++ + P+ +T+ + +P AF + +
Sbjct: 417 VVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKE 476
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+MK+ G PP L +Y + G CKLGN D A E+ M G+VP+ ++++
Sbjct: 477 EMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSII 529
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ E+F M+ + P+ T+T + + + A +M+ G+ P + +Y
Sbjct: 538 LRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNA 597
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
++G CK D AY + A M GV P + + L+
Sbjct: 598 LIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R E+ M DPN+ ++ + K + + A +L++QM G+ +Y P +
Sbjct: 225 RAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLI 284
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVP 258
GFCK ++A ++ M G +P
Sbjct: 285 RGFCKKEMFEEANDLRREMLGRGALP 310
>gi|157138591|ref|XP_001664268.1| hypothetical protein AaeL_AAEL003879 [Aedes aegypti]
gi|108880556|gb|EAT44781.1| AAEL003879-PA [Aedes aegypti]
Length = 515
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 112/257 (43%), Gaps = 34/257 (13%)
Query: 346 RVERTQIDENGVCCSCNERLVCIDIDPRETENFASS-LSNLACQREVRS-----DFNKFQ 399
R +++ ++G C C L I + + + + ++E+ + + +FQ
Sbjct: 267 RAVESRVTDSGKCSHCKRTLASIVVPEESFRALRDAFIQAVIIKKEIFNKTTPKELERFQ 326
Query: 400 EWLGRHGPFDAVIDGANVGLV--NQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
+L + P+D VIDG NV NQ + + Y + + KR+ ++
Sbjct: 327 AFLKKTKPYDVVIDGLNVAFSTGNQKSPAVYAMQIAAVVKHYVRQRKRVLII-------- 378
Query: 458 GGPAQIPK-NKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHLF 514
G + + K + R+ L+ T S DD + LYA + ++ + D MR H F
Sbjct: 379 -GRQHMDRWRSKDMKYIRENAFLFLTEDLSQDDPFLLYAALESGPQTDFFSRDLMRKHSF 437
Query: 515 QLLGTSF---FPRWKEKHQIR-LSVSRDGLNLLMPPPYSIVIQESENG---SWHVPVITG 567
LLG F RW+++HQ LS++ DG ++ P + S G WHVP++
Sbjct: 438 -LLGDELGGVFKRWQQEHQYSLLSITADGRVIIKSPFKFDMFAHSVPGDERQWHVPLVE- 495
Query: 568 DDLEAPR-----QWLCA 579
+ L+ P+ +WLC
Sbjct: 496 ECLKIPKVEKQARWLCV 512
>gi|349604148|gb|AEP99782.1| Mitochondrial ribonuclease P protein 3-like protein, partial [Equus
caballus]
Length = 262
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 116/259 (44%), Gaps = 32/259 (12%)
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL------SNLACQREVRSDFNK 397
+W+ + T I ++G C C + + I + P E E + ++ + +
Sbjct: 13 QWKGQFTTIQKSGQCLGCGKTIESIRLSPEEYEFLKGKILRDVIDGGDQYKKTTPQELKR 72
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
FQ ++ PFD VIDG NV + L VV++L + + L++L + +
Sbjct: 73 FQNFVKHCPPFDIVIDGLNVAKMFPKARESQVLLDVVSQL----AKQNLRLLVLGRKHML 128
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH- 512
++ +++ +++ + + + S DD + LYAT+ +CK +T D MRDH
Sbjct: 129 RQGSRWRRDE--MEMVQKQASCFFADNISEDDPFLLYATLHSGNHCK--FITKDLMRDHK 184
Query: 513 --LFQLLGTSFFPRWKEKHQI----RLSVSRDGLNLLMPPPYSIVIQESENGSWHVP--- 563
L F +W++ HQ+ RL S+ ++ + V+Q + + SWH+P
Sbjct: 185 ACLPDAKTQRLFFKWQQGHQLAIINRLPGSKITFQRIL--SHDTVVQTTGD-SWHIPYDE 241
Query: 564 -VITGDDLEAPRQWLCATR 581
++ E P +WLC R
Sbjct: 242 DLVERYSYEVPTKWLCLHR 260
>gi|241690293|ref|XP_002411751.1| conserved hypothetical protein [Ixodes scapularis]
gi|215504586|gb|EEC14080.1| conserved hypothetical protein [Ixodes scapularis]
Length = 306
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 15/194 (7%)
Query: 394 DFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHK 453
+ F+ +L R FD VIDG NV L N + + ++ ++ + ++ ++++ +
Sbjct: 97 ELEDFERFLSRAPSFDVVIDGLNVALKGNANSNGDKARNLLLVVKHYTLVEKRKVLVVGR 156
Query: 454 GRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN--CKSLLVTNDEMRD 511
+ P + + +W Y T S DD + L A + +++ + D MR+
Sbjct: 157 KHMRKWPRNV-----MDQVW-SHCVYYLTNDLSEDDPFLLCAAFSRGPGTVVASRDLMRN 210
Query: 512 HLFQLLGTS----FFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITG 567
H ++L S F +W+ HQ L VS L++L P + I +Q S WH+P G
Sbjct: 211 HRYKLHEDSRMGDLFDKWRRTHQEVLDVSWGKLSVLKPARHQISVQGSNAKGWHIPYDDG 270
Query: 568 DDLE---APRQWLC 578
+LE WLC
Sbjct: 271 SELEPYDIRTTWLC 284
>gi|340718776|ref|XP_003397839.1| PREDICTED: hypothetical protein LOC100652080 [Bombus terrestris]
Length = 506
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 99/248 (39%), Gaps = 50/248 (20%)
Query: 358 CCSCNERLVCIDIDPRETENFASS-----LSNLACQREVRSDFNKFQEWLGRHGPFDAVI 412
C C E + I ++ E + + N C + F ++ ++ P+D +I
Sbjct: 278 CHKCKEDISQESISDKDYERLLEATKKKLIFNEMCYVTNAQEIQSFINFIDKNKPYDLII 337
Query: 413 DGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDI 472
DG N+ + + + + + L+Q+ S + +NKK+L I
Sbjct: 338 DGLNIMFLAKRSMKY----DLTYELKQIFKSYK------------------EQNKKILII 375
Query: 473 WRDGGALYTTPPG------------SNDDWYWLYATVNCK--SLLVTNDEMRDHLFQLLG 518
R + G S DD + LYA K + +++ D MR H+F L
Sbjct: 376 ARKHMWKFIVKSGLQSVNCFYVQNSSKDDLFLLYAAFASKRNARIISKDLMRQHIFALQD 435
Query: 519 ---TSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDLE---- 571
+ F +W+ HQ + + + L P +Q+ +N SWH+P +T D +
Sbjct: 436 LELNALFKKWQFSHQFVIDTKKGYMQLNAQFPIDATVQK-QNNSWHIPYVTNDRISRMRH 494
Query: 572 -APRQWLC 578
+ ++W+C
Sbjct: 495 TSTKKWMC 502
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 16/189 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C + F + D+ N +T YN ++ + S +C + ND G+
Sbjct: 362 LCVRALSQFRRMSRIDNIAPNTVT-----YNAVIKIVS-RC---------KRNDCG-GIT 405
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + ++M T P+ T+ ++ + +PE A L ++MK + P Y +
Sbjct: 406 RAMSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLI 465
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
FC+ G ++A + M +VP+ +AL+ ++VDK +EI R+R L Q
Sbjct: 466 SAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQ 525
Query: 293 VSESTFKII 301
TF +
Sbjct: 526 PDRITFNAL 534
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 88/195 (45%), Gaps = 17/195 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C K GD +A ++++ R+ GI +N L+Y S R +D
Sbjct: 571 IDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGAS------------RSHD---- 614
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F+I M+ + ++P+ T ++ ++D AF+++++ K G+ P ++
Sbjct: 615 LAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNT 674
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ KL +++K +E+ + M G+ P + L+ ++ K+D + H
Sbjct: 675 FIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKR 734
Query: 291 RQVSESTFK-IIEDW 304
+ TF +IE++
Sbjct: 735 LEPDSVTFSLLIENY 749
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D SKR + AL+L+ + + + + + Y+ L+ C+ G
Sbjct: 430 IDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAF-CRAGY--------------- 473
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R IF++M +++ P+ F ++ + AF++ +M+ I P ++
Sbjct: 474 VERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNA 533
Query: 231 ALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ K N+ +A E M E G+ P+ +AL+ + K YE+ +RT
Sbjct: 534 LISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRT 592
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPKLRSYG 229
+ + FEI+ +M ++ P+ TF ++ + ++ A + + M +G+ P SY
Sbjct: 509 VDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYN 568
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ K G+ KAYEV M G+ P +AL+
Sbjct: 569 ALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALI 606
>gi|296214811|ref|XP_002753864.1| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 2
[Callithrix jacchus]
Length = 566
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 102/486 (20%), Positives = 184/486 (37%), Gaps = 99/486 (20%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 155 DVAKSLLAWVAAKNNGIV----DYDLLVRYLHLCVVHKQTSEVID--------------V 196
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M + +T + R + + AF L++ +K P K ++Y + G
Sbjct: 197 YEIMKARYKILDSGGYTLLIRGLIQSDRWREAFLLLEDLKKVMTPSK-KNYDDCIQGALL 255
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A D K +K+ +IL LR
Sbjct: 256 HQDVNTAWNLYQELLGHDIIPMLETLKAFFDFGKDIKDDNYSNKLLDILLYLRNNHLYPG 315
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF E
Sbjct: 316 ESFAHSIKTWF------------------------------------------------E 327
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + + I + P + E + ++ + N+F+ ++ PF
Sbjct: 328 SGQCSGCGQNIESIQLSPEDYEFLKGRIMRDVIDGGDQYKKTTPQELNRFENFVKSCPPF 387
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + L VV++L + + + L++L + + +Q K++
Sbjct: 388 DIVIDGLNVAKMFPKARESQLLLNVVSQLAK----QNLRLLVLGRKHMLRKSSQWRKDE- 442
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTSF 521
++ + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 443 -MEEVQKQARCFFADNISKDDPFLLYATLHSGNHCK--FITKDLMRDHKACLPDAKTQRL 499
Query: 522 FPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + G L Y V+Q + + SWH+P ++ E P +
Sbjct: 500 FFKWQQGHQLAIINGFPGSKLTFQRILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVPTK 558
Query: 576 WLCATR 581
WLC R
Sbjct: 559 WLCLHR 564
>gi|242049534|ref|XP_002462511.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
gi|241925888|gb|EER99032.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
Length = 643
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S+LG + + ++F +MI ++P+ ++ +A+ V + PE A DL+ QM G+ P +
Sbjct: 363 SSLGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGFVRAKQPEKAEDLLLQMSHLGVCPNV 422
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ + G+C + + + A V M +SGV P L+ + K+ K E+L
Sbjct: 423 VTFTTVISGWCSVADMESAMRVYEKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQM 482
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAE 312
+R + EST ++I D + +V E
Sbjct: 483 MRETGVKPKESTHRLIADAWKAVGLIE 509
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 1/140 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ QQM + PN F ++ + + D +++ M+ FGI P + +Y
Sbjct: 298 LEEALRCVQQMKDAGIVPNVVIFNTLLKGFLDVNDMAAVNNILGLMEQFGIKPDIVTYSH 357
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L F LG+ K +V M E+G+ P+ S L K V AK+ +K ++L ++ L
Sbjct: 358 QLNTFSSLGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGFVRAKQPEKAEDLLLQMSHLG 417
Query: 291 RQVSESTF-KIIEDWFDSVD 309
+ TF +I W D
Sbjct: 418 VCPNVVTFTTVISGWCSVAD 437
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168
H+L+ S G + + ++++D GI Y++L G ++ ++ D
Sbjct: 357 HQLNTFSSLGHMAKCMKVFDKMIEAGIEPDPQVYSILAK------GFVRAKQPEKAED-- 408
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ QM V PN TFT+V + D E A + ++M G+ P LR++
Sbjct: 409 --------LLLQMSHLGVCPNVVTFTTVISGWCSVADMESAMRVYEKMCKSGVYPNLRTF 460
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
++G+ + KA EV M E+GV P+E
Sbjct: 461 ETLIWGYSEQKQPWKAEEVLQMMRETGVKPKE 492
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 16/190 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA R++ + + G + + Y +++ C+CG + R
Sbjct: 258 RAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDAL-CRCGQ---------------ITRAH 301
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M+ +PN TF ++ R+ V E + QMK G PP +Y +
Sbjct: 302 DVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESH 361
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK GN D+A +V M + G P + L + V+ + + +++ L + +
Sbjct: 362 CKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMKELKCKANT 421
Query: 296 STFKIIEDWF 305
T+ I+ F
Sbjct: 422 VTYNILMRMF 431
>gi|12834350|dbj|BAB22879.1| unnamed protein product [Mus musculus]
Length = 317
Score = 66.2 bits (160), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 77/329 (23%), Positives = 123/329 (37%), Gaps = 60/329 (18%)
Query: 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG 331
D DK+ +IL LR ES I+ WF+S+ +
Sbjct: 24 DDHYSDKLLDILLYLRNNQLYPGESFAHSIKTWFESIPGRQ------------------- 64
Query: 332 GGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC---- 387
W+ + T I ++G C C + I + P E E +
Sbjct: 65 -------------WKGQFTTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGD 111
Query: 388 --QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKR 445
++ + +F+ ++ PFD VIDG NV + F + N L +S +
Sbjct: 112 QYKKTTPQELKRFESFVNSCPPFDIVIDGLNVAKM------FPKGRESQNLLGVVSQLAQ 165
Query: 446 MPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN----CKS 501
L +L GR K+ ++ R + S DD + LYAT+N CK
Sbjct: 166 QNLQLLVLGRKHMLRPSSQWRKEEMEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCK- 224
Query: 502 LLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESE 556
+T D +RDH L F +W++ HQ+ + + L Y V+Q +
Sbjct: 225 -FITKDLLRDHKACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTG 283
Query: 557 NGSWHVP----VITGDDLEAPRQWLCATR 581
+ SWH+P ++ E P +WLC R
Sbjct: 284 D-SWHIPYDEDLVQRSSCEVPTKWLCLQR 311
>gi|148704783|gb|EDL36730.1| mCG22352, isoform CRA_a [Mus musculus]
Length = 271
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNK 397
+W+ + T I ++G C C + I + P E E + ++ + +
Sbjct: 18 QWKGQFTTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKR 77
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
F+ ++ PFD VIDG NV + F + N L +S + L +L GR
Sbjct: 78 FESFVNSCPPFDIVIDGLNVAKM------FPKGRESQNLLGVVSQLAQQNLQLLVLGRKH 131
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN----CKSLLVTNDEMRDH- 512
K+ ++ R + S DD + LYAT+N CK +T D +RDH
Sbjct: 132 MLRPSSQWRKEEMEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCK--FITKDLLRDHK 189
Query: 513 --LFQLLGTSFFPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESENGSWHVP----V 564
L F +W++ HQ+ + + L Y V+Q + + SWH+P +
Sbjct: 190 ACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDL 248
Query: 565 ITGDDLEAPRQWLCATR 581
+ E P +WLC R
Sbjct: 249 VQRSSCEVPTKWLCLQR 265
>gi|50510469|dbj|BAD32220.1| mKIAA0391 protein [Mus musculus]
Length = 275
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 105/257 (40%), Gaps = 28/257 (10%)
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNK 397
+W+ + T I ++G C C + I + P E E + ++ + +
Sbjct: 22 QWKGQFTTIQKSGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKR 81
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
F+ ++ PFD VIDG NV + F + N L +S + L +L GR
Sbjct: 82 FESFVNSCPPFDIVIDGLNVAKM------FPKGRESQNLLGVVSQLAQQNLQLLVLGRKH 135
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVN----CKSLLVTNDEMRDH- 512
K+ ++ R + S DD + LYAT+N CK +T D +RDH
Sbjct: 136 MLRPSSQWRKEEMEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCK--FITKDLLRDHK 193
Query: 513 --LFQLLGTSFFPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESENGSWHVP----V 564
L F +W++ HQ+ + + L Y V+Q + + SWH+P +
Sbjct: 194 ACLPDARTQRLFFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDL 252
Query: 565 ITGDDLEAPRQWLCATR 581
+ E P +WLC R
Sbjct: 253 VQRSSCEVPTKWLCLQR 269
>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 978
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 19/218 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C++ G+V AL +Y + R + + S Y +++ CS + G+
Sbjct: 444 ISACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACS--------QKGN-------- 487
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ ++ + D V P+E F+++ A +D E AF ++ MK G+ P Y
Sbjct: 488 VDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANMKKEGLKPGAVVYS- 546
Query: 231 ALFGFCK-LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+L G C LGN +KA EV + SG+ P +AL+ +A + + IL ++
Sbjct: 547 SLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQFTRALSILQDVKNS 606
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
++ ++ I+ + A++ L+ ++ + EGI
Sbjct: 607 GIMPNQISYSILLRACEKEKMADMA-LDLYMTALSEGI 643
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 53/214 (24%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C+K G V +++ + GI + H + ++ C+ + G
Sbjct: 337 ISACAKAGKVDLLFQIFHEMEVAGIEANVHTFGAMIDGCA-RAGQ--------------- 380
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP--PKLRSY 228
L + F + MI+ V P+ F ++ + AFD++ MK+ P P +Y
Sbjct: 381 LPKAFGAYGIMISKNVKPDRVIFNTLINACTRAGAVQRAFDVLTDMKAEATPIKPDHVTY 440
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGES---------------------------------- 254
G + + G D+A EV +M ES
Sbjct: 441 GALISACARAGEVDRALEVYQNMRESNVKGSPACYTAVVHACSQKGNVDYALLVYDDLKK 500
Query: 255 -GVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
GV P+E SAL+ + A+ ++K + I+ ++
Sbjct: 501 DGVKPDEVFFSALVDAAGHAQDIEKAFSIIANMK 534
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ +CS G+ +AL +Y D RS+G+ + +N L+ C+
Sbjct: 549 MGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTAL-CEANQ--------------- 592
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
R I Q + + PN+ +++ + R ++ +MA DL S GI P +
Sbjct: 593 FTRALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDLYMTALSEGIKPNV 647
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 9/189 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R ++FQQM+ V PN T+ ++ ++ +MA + ++M G+ P +Y
Sbjct: 241 VDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNT 300
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK D+A V M + GV P+ + ++ A+ +DK + ++
Sbjct: 301 IIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKG 360
Query: 291 RQVSESTFKIIEDWF---DSVDAAEIGVLNWDVSKVREGIVRGGGGWHG--QGWLGSGKW 345
+ T+ II D SVD AE GV + K G+ G ++ G+L +G+W
Sbjct: 361 VKPDNLTYTIIIDGLCKAQSVDRAE-GVFQQMIDK---GVKPNNGTYNCLIHGYLSTGQW 416
Query: 346 RVERTQIDE 354
+I E
Sbjct: 417 EEVVQRIKE 425
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 16/173 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K G EA L+D GI S Y ++L+ G + +
Sbjct: 442 LDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLH----GYGKKGA------------ 485
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ M+ + + PN F +V + + + +MK G+ P + +YG
Sbjct: 486 LSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGT 545
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ CKLG D A M GV P ++L+ K +KV E+
Sbjct: 546 LIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELF 598
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 7/155 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + +F +M V P+ T+ ++ ++ + A D+ +QM G+ P +Y
Sbjct: 209 VDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNT 265
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK D A V M + GV P + ++ A+ VD+ + ++
Sbjct: 266 IIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRG 325
Query: 291 RQVSESTFKIIEDWF---DSVDAAEIGVLNWDVSK 322
+ T+ I D ++D AE GV + K
Sbjct: 326 VKPDHVTYNTIIDGLCKAQAIDKAE-GVFQQMIDK 359
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 105/257 (40%), Gaps = 27/257 (10%)
Query: 72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDA 130
A++K++ ++E M K K + SP V L D K G V +A+ ++
Sbjct: 514 AYAKRAMIDE-------VMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQM 566
Query: 131 RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE 190
+ G+T + +N L+Y C + E + E+F +M+ + P+
Sbjct: 567 INEGVTPNNVVFNSLVYGL---CTVDKWEKVE-------------ELFLEMLNQGIRPDI 610
Query: 191 ATFTSVARLAVAKEDPEM-AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249
F +V + KE M A L+ M G+ P + SY + G C D+A ++
Sbjct: 611 VFFNTVL-CNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLD 669
Query: 250 HMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR-LRTLVRQVSESTFKIIEDWFDSV 308
M +G+ P + LL A ++D Y + LR V E+ I+ F S
Sbjct: 670 GMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSG 729
Query: 309 DAAEIGVLNWDVSKVRE 325
+E L ++ K R+
Sbjct: 730 RFSEARELYVNMIKSRK 746
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ M+ + P+ ++ ++ + A L+ M S G+ P + SY L G+C
Sbjct: 632 LIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYC 691
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G D AY + M GV P + +L + + + E+ + + S
Sbjct: 692 KAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSIC 751
Query: 297 TFKIIEDWF 305
T+ II D F
Sbjct: 752 TYSIILDGF 760
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R +FQQMI V PN T+ + ++ E +K+M + + P + +YG
Sbjct: 381 VDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGL 440
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
L CK G ++A + M G+ P
Sbjct: 441 LLDYLCKNGKCNEARSLFDSMIRKGIKP 468
>gi|332018303|gb|EGI58908.1| Mitochondrial ribonuclease P protein 3 [Acromyrmex echinatior]
Length = 524
Score = 65.5 bits (158), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 28/195 (14%)
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
F+ ++ + PFD VIDG N+ + S +L ++N + + LV+ K +
Sbjct: 335 FKTFIENNKPFDVVIDGLNLTYMKYK--SAPKLLLLINVVEHFKSRGKKVLVLTRKHQ-- 390
Query: 458 GGPAQIPKNKKLLDIWR--DGGALYTTPPGSNDDWYWLYATVNC--KSLLVTNDEMRDHL 513
+KL + R ++ S DD Y LYAT+ C ++ V++D MR H
Sbjct: 391 ---------RKLSEFKRVERNAFVFLIDNLSADDPYILYATMACGMNTMFVSSDLMRQHK 441
Query: 514 FQLLGTSF---FPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGDDL 570
+ L F +W+ HQ + S G+ + P Y ++Q+++N WH+P +T D
Sbjct: 442 YSLQDADLQQKFKKWQFSHQYFIKFSATGIRIQDPFIYLPIVQKNDN-CWHIPCVTEDLR 500
Query: 571 EAPRQ-------WLC 578
E ++ W C
Sbjct: 501 ETLKEFYEFSDKWYC 515
>gi|321477361|gb|EFX88320.1| hypothetical protein DAPPUDRAFT_42022 [Daphnia pulex]
Length = 329
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 103/246 (41%), Gaps = 33/246 (13%)
Query: 350 TQIDE-NGVCCSCNERLVCIDIDPRETENFASSLSN---LACQREVRS---DFNKFQEWL 402
T +DE G C SC + L +I E + L L + S + +FQ ++
Sbjct: 90 TTVDEGTGRCRSCEKLLQNSEISDDEFADLKQGLMEKVLLGTDVYLGSKPEEIRRFQNFI 149
Query: 403 GRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQ 462
+ P+D VIDG NV + F Y + + ++ + LV+ K + G +
Sbjct: 150 QKTAPYDVVIDGLNVAHQGKQTFK-YPDQALSSVVKYFTNQNLRVLVLTRKHLLRGTTLK 208
Query: 463 IPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV-NCKSLLVTNDEMRDHLFQLLG--- 518
++ T S DD + L + V + + V+ D RDHLF+L
Sbjct: 209 -------------SALVFATEDLSGDDPFLLCSAVQSSNTKFVSEDVFRDHLFRLGDFRL 255
Query: 519 TSFFPRWKEKHQIRLSVSRD---GLNLLMPPPYSIVIQESENGSWHVPVITGD---DLEA 572
+ F RW+ K Q+++ VS D G+ P Y + Q S+ G WH+P G E
Sbjct: 256 QNIFRRWQHKAQMQI-VSFDKNGGVRFQQPRKYRTISQFSD-GCWHIPYDDGTPRYSYEL 313
Query: 573 PRQWLC 578
P WLC
Sbjct: 314 PATWLC 319
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 18/210 (8%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK GDV AL++Y+ + + +N+L+ +CK G+ ++
Sbjct: 543 SKLGDVSRALQVYNRMLELELVPDKVTFNILI-AGACKAGN---------------FEQA 586
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+F++M+ + P+ TF ++ E A D++ M + G+PP + +Y + G
Sbjct: 587 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHG 646
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
CK G ++A + M SG VP+ +L+ A + D +++ L++
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 706
Query: 295 ESTFKIIED--WFDSVDAAEIGVLNWDVSK 322
T+ I+ D W I VL V K
Sbjct: 707 TVTYNILVDGLWKSGQTEQAITVLEEMVGK 736
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 62/144 (43%)
Query: 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
+V P+ TF+++ + A + M + G P + +Y + G CK ++A
Sbjct: 355 RVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERA 414
Query: 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDW 304
+ + M + GV P+ S L+ A +VD+ E+LH + + + TF I D
Sbjct: 415 HAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDG 474
Query: 305 FDSVDAAEIGVLNWDVSKVREGIV 328
D + +D ++ G+V
Sbjct: 475 LCKSDRSGEAFQMFDDMALKHGLV 498
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 21/212 (9%)
Query: 99 RRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
R P+ V + L D K GD+ EA RL+ D S + Y+VL+ CK G
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGL-CKVGR-- 301
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVD--PNEATFTSVARLAVAKEDPEMAFDLVKQ 215
+ E+ Q+M D PN T+ S + A +L++
Sbjct: 302 -------------IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 348
Query: 216 MK--SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
++ S + P ++ + G CK G D+A V M G VP +AL+ A
Sbjct: 349 LRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKA 408
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
K+++ + ++ + T+ ++ D F
Sbjct: 409 DKMERAHAMIESMVDKGVTPDVITYSVLVDAF 440
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%)
Query: 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
+V P+ TF+++ + A ++ M + G P + +Y + G CK ++A
Sbjct: 849 RVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERA 908
Query: 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDW 304
+ + M + GV P+ S L+ A VD+ E+LH + + + TF I D
Sbjct: 909 HAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDG 968
Query: 305 FDSVDAAEIGVLNWDVSKVREGI 327
D + +D ++ G+
Sbjct: 969 LCKSDQSGEAFQMFDDMTLKHGL 991
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
CKCG + +F MI PN T+ ++ + E A
Sbjct: 371 CKCGQ---------------IDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 415
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+++ M G+ P + +Y + FCK D+A E+ M G P
Sbjct: 416 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 463
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 173 RGFEIFQ-QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
R EIF+ +M D V P T+ ++ + +L +++ G P + +Y
Sbjct: 198 RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTL 257
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ CK G+ ++A + M VP S L+ ++D+ E++ +
Sbjct: 258 IDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEM 312
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F MI PN T+ + + E A +++ M G+ P + +Y + FC
Sbjct: 876 VFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 935
Query: 237 KLGNTDKAYEVDAHMGESGVVP 258
K + D+A E+ M G P
Sbjct: 936 KASHVDEALELLHGMASRGCTP 957
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 81/207 (39%), Gaps = 33/207 (15%)
Query: 111 LDMCSKRGDVFEALRLYDDARS--------NGITLSQHHYNVLLYVCSCKCGSESSENGD 162
+D K GD+ EA RL+ D S N +T Y+VL+ CK G
Sbjct: 749 IDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVT-----YSVLINGL-CKVGR------- 795
Query: 163 RENDSNLGLKRGFEIFQQMITDKVD--PNEATFTSVARLAVAKEDPEMAFDLVKQMK--S 218
+ E+ Q+M+ D PN T+ S + A +L++ ++ S
Sbjct: 796 --------IDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGS 847
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
+ P ++ + G CK G TD+A V M G VP + L+ K+++
Sbjct: 848 LRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMER 907
Query: 279 VYEILHRLRTLVRQVSESTFKIIEDWF 305
+ ++ + T+ ++ D F
Sbjct: 908 AHAMIESMVDKGVTPDVITYSVLVDAF 934
>gi|444722485|gb|ELW63177.1| Mitochondrial ribonuclease P protein 3 [Tupaia chinensis]
Length = 570
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 109/247 (44%), Gaps = 28/247 (11%)
Query: 354 ENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGP 407
E+G C C + + I + P E E + ++ + +F+ ++ P
Sbjct: 331 ESGQCLGCGKTIESIHLSPEEYEFLKGRIMRDVIDGGDQYKKTTPQELQRFENFVKSCPP 390
Query: 408 FDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
FD VIDG NV + L+ VV++L + + + L++L + + ++ KN+
Sbjct: 391 FDIVIDGLNVAKMFPKARESEVLSNVVSQLAK----QNLRLLVLGRKHMLTQRSRWRKNE 446
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
++ + + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 447 --MEKIQKQASCFFADDISEDDPFLLYATLHSGNHCK--FITKDLMRDHKACLPDAKTQR 502
Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPR 574
F +W++ HQ+ + G ++ Y V+Q + + SWH+P ++ E P
Sbjct: 503 LFFKWQQGHQLAIMNRFLGSKIVFQHILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVPT 561
Query: 575 QWLCATR 581
+WLC R
Sbjct: 562 KWLCLHR 568
>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
Length = 637
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S+LG + + +F +MI ++P+ ++ +A+ V + PE A DL+ QM G+ P +
Sbjct: 358 SSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNV 417
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ + G+C + + + A V M +SGV P L+ + K+ K E+L
Sbjct: 418 VTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQM 477
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAE 312
+R + +ST+ +I D + +V E
Sbjct: 478 MRETGVKPKQSTYCLIADAWKAVGLTE 504
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ QQM PN F ++ + + D ++ M+ FGI P + +Y
Sbjct: 293 LEEALRCVQQMKDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMEKFGIKPDIVTYSH 352
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L F LG+ K V M E+G+ P+ S L K V A++ +K ++L ++ L
Sbjct: 353 QLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLG 412
Query: 291 RQVSESTF-KIIEDWFDSVD 309
+ TF +I W D
Sbjct: 413 LCPNVVTFTTVISGWCSVAD 432
>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
Length = 637
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S+LG + + +F +MI ++P+ ++ +A+ V + PE A DL+ QM G+ P +
Sbjct: 358 SSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNV 417
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ + G+C + + + A V M +SGV P L+ + K+ K E+L
Sbjct: 418 VTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQM 477
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAE 312
+R + +ST+ +I D + +V E
Sbjct: 478 MRETGVKPKQSTYCLIADAWKAVGLTE 504
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ QQM PN F ++ + + D ++ MK FGI P + +Y
Sbjct: 293 LEEALRCVQQMKDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMKKFGIKPDIVTYSH 352
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L F LG+ K V M E+G+ P+ S L K V A++ +K ++L ++ L
Sbjct: 353 QLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLG 412
Query: 291 RQVSESTF-KIIEDWFDSVD 309
+ TF +I W D
Sbjct: 413 LCPNVVTFTTVISGWCSVAD 432
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 16/190 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ +A ++ D + G+ + + Y++++ C+CG + R
Sbjct: 259 RAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSL-CRCGQ---------------ITRAH 302
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +MI DPN TF S+ R+ V E + QMK G SY +
Sbjct: 303 DVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRLGCAADTISYNFLIESH 362
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK N D+A +V M + GV P +++ + V+ + + +++ L +
Sbjct: 363 CKDENLDEAVKVLDTMVKKGVAPNASTFNSIFGCIAELHDVNGAHRMYAKMKELKCMPNT 422
Query: 296 STFKIIEDWF 305
T+ I+ F
Sbjct: 423 LTYNILMRMF 432
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 58/114 (50%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F + K +P+ +TS+ D A ++ MK G+ P + +Y +
Sbjct: 233 ELFFDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMKEAGVKPNVYTYSIVIDSL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
C+ G +A++V + M ++G P ++L+++ V A + +KV ++ ++++ L
Sbjct: 293 CRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLQVYNQMKRL 346
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++ +M K PN T+ + R+ + +M L K+M + P + +Y + FC
Sbjct: 409 MYAKMKELKCMPNTLTYNILMRMFADSKSIDMVLKLKKEMDESEVEPNVNTYRILILMFC 468
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELS---ALLKLSVDAKKVDKVYEILHRL 286
+ G+ + AY + M E + +P LS +L+L +A ++ K E++ ++
Sbjct: 469 EKGHWNNAYNLMKEMVEEKCL--KPNLSIYETVLELLRNAGQLKKHEELVEKM 519
>gi|297694929|ref|XP_002824716.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 3 [Pongo
abelii]
Length = 567
Score = 65.5 bits (158), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 30/245 (12%)
Query: 354 ENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGP 407
E+G C C + + I + P E E + ++ + +F+ ++ P
Sbjct: 328 ESGRCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGGDQYRKTTPWELKRFKNFIKSCPP 387
Query: 408 FDAVIDGANVG-LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKN 466
FD VIDG NV + + S + LN V +Q + L++L + + +Q ++
Sbjct: 388 FDVVIDGLNVAKMFPKVRESQFLLNVVSQLAKQ-----NLRLLVLGRKHMLRKCSQWSQD 442
Query: 467 KKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGT 519
++ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 443 -EMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHCR--FITRDLMRDHKACLPDAKTQ 498
Query: 520 SFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAP 573
F +W++ HQ+ ++ G L P Y V+Q + + SWH+P ++ E P
Sbjct: 499 RLFFKWQQGHQLAITNRFPGSKLTFQPILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVP 557
Query: 574 RQWLC 578
+WLC
Sbjct: 558 TKWLC 562
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 18/191 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRG 174
K+G ALR+ DD NGI + YN+++ +C K R + L LKR
Sbjct: 276 KKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLK----------RSARAYLLLKRM 325
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
E+ + P+E ++ ++ + +A + QM + P + +Y + G
Sbjct: 326 REV-------NLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDG 378
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
+C+ G TD+A V M +GV P E SALL K+ +++ LR+ ++
Sbjct: 379 YCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISIN 438
Query: 295 ESTFKIIEDWF 305
+ + I+ D F
Sbjct: 439 RTMYTILIDGF 449
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 24/223 (10%)
Query: 90 MSNKSKKKARRESPEGVLRHKLDMCS------KRGDVFEALRLYDDARSNGITLSQHHYN 143
M +++K+ R GVL + + + K G EAL+ + D +G+ + +N
Sbjct: 489 MIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHN 548
Query: 144 VLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD-KVDPNEATFTSVARLAVA 202
LL CS RE G+ E F+Q ++ K+ + A+F +
Sbjct: 549 ALL--CSFY----------RE-----GMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQ 591
Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
+ + AF + M G PP + +YG L G C+ G+ +A E ++ E +E
Sbjct: 592 RGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKT 651
Query: 263 LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
L+ LL +D+ ++ ++ T T+ I+ D F
Sbjct: 652 LNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGF 694
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 79/202 (39%), Gaps = 32/202 (15%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + L LY D GI Y +L++ C+ G ++
Sbjct: 802 KKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGL-CEYGL---------------IEIAV 845
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKE----------------DPEMAFDLVKQMKSF 219
+ ++M+ + V P+ F + + K D + AF+L + MK+
Sbjct: 846 KFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVGDIDGAFELKEDMKAL 905
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
G+ P + + G CK G ++A V + + +G+VP + L+ K+D
Sbjct: 906 GVVPSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDA 965
Query: 280 YEILHRLRTLVRQVSESTFKII 301
+ + + + +V T+ ++
Sbjct: 966 FHLKQLMESCGLKVDVVTYNVL 987
>gi|326920739|ref|XP_003206626.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Meleagris
gallopavo]
Length = 574
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 28/244 (11%)
Query: 354 ENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGP 407
E+G C CN +L ++ E N + + ++ +F FQ ++ P
Sbjct: 180 ESGQCPVCNHQLEDSELTEEEYSNLRERIISDVIHGTDTFRKTSPQEFEAFQTFVENRLP 239
Query: 408 FDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
FD VIDG N+ + L VN L + L++L GR + +
Sbjct: 240 FDIVIDGLNISHIMPRKVQCENLFEAVNCLAKDYGR----LLVL--GRKHMLTNSLNWKR 293
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
+++ ++ + S DD + LYAT+ +CK VT D +RDH L +
Sbjct: 294 EVMKEMQNKADFFFAENISEDDAFLLYATLRSGKHCK--FVTRDFLRDHKACLSDSVTRH 351
Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPPP--YSIVIQESENGSWHVPVI----TGDDLEAPR 574
F +W+ HQI S S G ++ P Y V+Q + + +WH+P + PR
Sbjct: 352 LFRKWQRGHQIVFSPSAGGKHIKFLPACSYDCVVQTTGD-TWHIPYKDIFEEKYSYQIPR 410
Query: 575 QWLC 578
+WLC
Sbjct: 411 KWLC 414
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 16/190 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ +A ++ D + GI + + Y++++ C+CG + R
Sbjct: 294 RAGDISKAEEVFSDMKMAGIKPNVYTYSIVIDSL-CRCGQ---------------ITRAH 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +MI DPN TF S+ R+ V E + QMK G P SY +
Sbjct: 338 DVFSEMIDAGCDPNAVTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESH 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C+ N ++A ++ M + GV P + + V+ + + R++ L Q +
Sbjct: 398 CRDENLEEAAKILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNT 457
Query: 296 STFKIIEDWF 305
T+ I+ F
Sbjct: 458 LTYNILMRMF 467
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + L++Y+ + G YN ++ C E+ L+
Sbjct: 364 KAGRTEKVLKVYNQMKRLGCPADTISYN---FIIESHCRDEN-------------LEEAA 407
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+I M+ V PN +TF + D A + +MK P +Y + F
Sbjct: 408 KILNLMVKKGVAPNASTFNFIFGCIAKLHDVNGAHRMYARMKELNCQPNTLTYNILMRMF 467
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ +TD ++ M ES V P L+ + D K + Y+++ +
Sbjct: 468 AESRSTDMVLKMKKEMDESQVEPNVNTYRILISMFCDMKHWNNAYKLMMEM 518
>gi|328908723|gb|AEB61029.1| mitochondrial ribonuclease p protein 3-like protein, partial [Equus
caballus]
Length = 250
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 115/259 (44%), Gaps = 32/259 (12%)
Query: 344 KWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL------SNLACQREVRSDFNK 397
+W+ + T I ++G C C + + I + P E E + ++ + +
Sbjct: 1 QWKGQFTTIQKSGQCLGCGKTIESIRLSPEEYEFLKGKILRDVIDGGDQYKKTTPQELKR 60
Query: 398 FQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVS 457
FQ ++ PFD VIDG NV + L VV++L + + L++L + +
Sbjct: 61 FQNFVKHCPPFDIVIDGLNVAKMFPKARESQVLLDVVSQL----AKQNLRLLVLGRKHML 116
Query: 458 GGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH- 512
++ +++ +++ + + + S DD + YAT+ +CK +T D MRDH
Sbjct: 117 RQGSRWRRDE--MEMVQKQASCFFADNISEDDPFLQYATLHSGNHCK--FITKDLMRDHK 172
Query: 513 --LFQLLGTSFFPRWKEKHQI----RLSVSRDGLNLLMPPPYSIVIQESENGSWHVP--- 563
L F +W++ HQ+ RL S+ ++ + V+Q + + SWH+P
Sbjct: 173 ACLPDAKTQRLFFKWQQGHQLAIISRLPGSKITFQRIL--SHDTVVQTTGD-SWHIPYDE 229
Query: 564 -VITGDDLEAPRQWLCATR 581
++ E P +WLC R
Sbjct: 230 DLVERYSYEVPTKWLCLHR 248
>gi|332229156|ref|XP_003263757.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2
[Nomascus leucogenys]
Length = 567
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 102/484 (21%), Positives = 182/484 (37%), Gaps = 101/484 (20%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI Y++L+ Y+ C ++SE D +
Sbjct: 156 DVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVFHMQTSEVID--------------V 197
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M +T + R + + A L++ +K P K ++Y + G
Sbjct: 198 FEIMKARYKTLEPGGYTLLIRGLIHSDRWREALLLLEDVKKVMTPSK-KNYNDCIRGALL 256
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + +VP L A D K +K+ +IL LR
Sbjct: 257 HQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDIKDDNYSNKLLDILSYLRNNQLYPG 316
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF E
Sbjct: 317 ESFAHSIKTWF------------------------------------------------E 328
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C +C + + I + P E E + ++ + +F+ ++ PF
Sbjct: 329 SGQCSACGKTIESIQLSPEEYEYLKGKIMRDVIDGGDQYKKTTPQELKRFENFIKSCPPF 388
Query: 409 DAVIDGANVG-LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
D VIDG NV + + S + LN V +Q + L++L + + +Q K+
Sbjct: 389 DIVIDGLNVAKMFPKARESQFLLNVVSQLAKQ-----NLRLLVLGRKHMLRQCSQWRKD- 442
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
++ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 443 EMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQR 499
Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPR 574
F +W++ HQ+ + G L Y V+Q + + SWH+P ++ E P
Sbjct: 500 LFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDLVERYSYEVPT 558
Query: 575 QWLC 578
+WLC
Sbjct: 559 KWLC 562
>gi|298707574|emb|CBJ30158.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 606
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 113/282 (40%), Gaps = 49/282 (17%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM------KSFGIPPK 224
L+ E F M+ + P+E+ T V RL V + A +++ M K F P+
Sbjct: 319 LEEAEEQFADMLKYGMLPSESCATMVIRLRVQRGKLAEAMEVLAMMEGREYQKKF-CRPR 377
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
RSY P + + G D ++ HM + P+E S LL L + + K +++
Sbjct: 378 FRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKE---SFLLDL---IEGIAKNHQVSS 431
Query: 285 RLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGK 344
R +S ++ + D + I V + EG
Sbjct: 432 R---------DSLAQLADHLLDGMSKTLIYPSAPTVKTLVEG------------------ 464
Query: 345 WRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ---REVRSDFNKFQEW 401
W + T + E G C +C E L + P + SS+ +A Q REV+ + F W
Sbjct: 465 WNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVRIAAQNGAREVQR-LSWFANW 523
Query: 402 L-GRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLR 438
P A+IDG NVG +NQ+ FS Q++ + L+
Sbjct: 524 FCSLEDPPTAIIDGPNVGFMNQNFKEGGFSLTQVDWLAEHLK 565
>gi|426376681|ref|XP_004055122.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 3
[Gorilla gorilla gorilla]
Length = 567
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 103/507 (20%), Positives = 190/507 (37%), Gaps = 99/507 (19%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWF------------------------- 327
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQ-- 388
E+G C C + + I + P E E + +
Sbjct: 328 -----------------------ESGRCSGCGKTIESIQLSPEEYECLKGKIMKDVIEGG 364
Query: 389 ----REVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
+ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 365 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 420
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 421 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 478
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 479 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQHILSYDTVVQTT 536
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 537 GD-SWHIPYDEDLVERCSYEVPTKWLC 562
>gi|384493379|gb|EIE83870.1| hypothetical protein RO3G_08575 [Rhizopus delemar RA 99-880]
Length = 493
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 91/201 (45%), Gaps = 22/201 (10%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS-------ESSENGDRENDS-------- 167
AL +D + GI + Y++L+ C K + E+ E G +
Sbjct: 125 ALETLEDMKKRGIEPTLLTYSLLIRSCRAKASNTAFALLKEAEEKGLAVQNEPRMYFDVL 184
Query: 168 NLGLKRG-FEIFQ----QMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LG +R +E+ + IT+ + P+E T V R+A K D ++A D+++Q+ + G
Sbjct: 185 RLGTRRDEYEMVNYCWNKAITEHSLRPDEGTCLQVLRVAAKKGDTKLATDVIRQLSTNGY 244
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL-KLSVDAKKVDKVY 280
P K + P + F + A+ V M SGV P + AL KLS D K +DK Y
Sbjct: 245 PYKEHYFTPLMEAFLVKDDLKSAFNVLDIMRVSGVPPTMNAIYALREKLSKDIKTIDKAY 304
Query: 281 EILHRLRTLVRQVSESTFKII 301
IL LR + V + F ++
Sbjct: 305 YILEELRREKKAVDVTAFNVV 325
>gi|322802765|gb|EFZ22977.1| hypothetical protein SINV_06078 [Solenopsis invicta]
Length = 489
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 35/254 (13%)
Query: 345 WRVERTQID-ENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNK 397
W + I E G C C L I +E + A S+ + ++ + K
Sbjct: 244 WSTQLVTISRETGNCKHCGYSLSKITFTEKEFQELAKSIMDRVIIGSDVYRKTNPQELLK 303
Query: 398 FQEWLGRHGPFDAVIDGANVGLV-NQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRV 456
FQ ++ P+D V+DG N+ + N+ + Y L VV+ + K+ LV+ K +
Sbjct: 304 FQRFIENTKPYDIVMDGLNLTYMQNKTGPTLYWLINVVDYFNK---QKKKILVLTRKHQ- 359
Query: 457 SGGPAQIPKNKKLLDIWR--DGGALYTTPPGSNDDWYWLYATV--NCKSLLVTNDEMRDH 512
KKL + ++ S DD Y LYAT+ ++ ++ D MR H
Sbjct: 360 ----------KKLFSFKQIERRAHVFLLDDLSADDPYILYATMASGMNAMFISLDLMRQH 409
Query: 513 LFQLLGTSF---FPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITGD- 568
L F +W+ HQ L S+ G+ + P +Q+ N WHVP ++ D
Sbjct: 410 KHSLQNEHLRQTFKKWQYSHQYFLKKSKTGIRIQDPFACMPFVQKI-NNCWHVPYVSDDL 468
Query: 569 ----DLEAPRQWLC 578
E P++W C
Sbjct: 469 VIAESYEFPKKWCC 482
>gi|348674664|gb|EGZ14482.1| hypothetical protein PHYSODRAFT_505070 [Phytophthora sojae]
Length = 551
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 109/497 (21%), Positives = 178/497 (35%), Gaps = 133/497 (26%)
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQM--------KSFGIPPKL--RSYGPALFGFCKL 238
NEA F SV +L +A D E A+ L+ ++ K+ PPKL R+ P L C+
Sbjct: 79 NEAVFGSVIKLHLAAGDTEAAWKLINKLRKAVRARSKAGQEPPKLHFRTVSPLLEHECRH 138
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD--------------------- 277
AY + + V L+++ + K D
Sbjct: 139 DQFASAYSRWQQLKQHDVEWTSAMEDVLVQMVIACVKSDEQQLNEYTEMPESEASEPHFH 198
Query: 278 -KVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHG 336
++ +LH L+ R+VS S + + F + G + +V + +R G
Sbjct: 199 AQMASLLHDLQITCREVSPSNAQRLLHAF-----RDAGYIVENVPS--DAHMRSKCPCCG 251
Query: 337 QGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFN 396
Q G ER + L I+ S S LA + V+ +
Sbjct: 252 QALCKQGMTEQERAYM------------LAAIE----------SRRSKLAPENTVKEYLD 289
Query: 397 KFQEWLG-RHG---------------PFDAVIDGANVGLVNQH----NFSFYQLNTVVNR 436
F+EWL RH P V+DG N+ +NQ+ + Q++ +
Sbjct: 290 PFREWLMLRHENFQLQNVVAGSKDGRPLHFVLDGPNIAYINQNFEAGTYRLDQVDAIAKD 349
Query: 437 LRQMSP--SKRMPLVIL------------HKGRVSGGP----AQIPKNKKLLDIWRDGGA 478
L+ S MP L +K G + P+ K +++ W+D
Sbjct: 350 LQAQGHLVSITMPQAYLADKFVVRIRTKQNKSMRRQGKFVSRERTPEEKAIMERWKDEDM 409
Query: 479 LYTTPPGS-NDDWYWLYATV--NCKSLLVTNDEMRDH--LFQLLGTSFFPRWKEKHQIRL 533
LY+ +DD +WLYA+V + +VTND+ RDH + RWK+ + +
Sbjct: 410 LYSCRTDFLSDDLFWLYASVLMGREGRVVTNDQGRDHGSSTPAISMDLIARWKDMTTVNI 469
Query: 534 SVSR-------------------DGLNLLMPPPYSIVIQESENGSWHVPVITGDDL-EAP 573
+ + + L P P+S V Q + +H P+ ++ E P
Sbjct: 470 EIKHEEVAFNAAAAGNLTTPIPIESIRLRHPEPFSRVPQVTAPQHFHFPIAEQANMNEHP 529
Query: 574 RQ---------WLCATR 581
Q WLC R
Sbjct: 530 NQSMGQRKRTRWLCVHR 546
>gi|294899883|ref|XP_002776791.1| multidrug resistance pump, putative [Perkinsus marinus ATCC 50983]
gi|239883992|gb|EER08607.1| multidrug resistance pump, putative [Perkinsus marinus ATCC 50983]
Length = 576
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 27/138 (19%)
Query: 467 KKLLDIWR----DGGAL---YTTPPGSNDDWYWLYATVNC----------------KSLL 503
KK D W D G+L Y PP +NDDW+W+YA + C K +
Sbjct: 431 KKYDDKWTKQNDDNGSLFDLYRVPPRANDDWFWMYAAIRCEEQARALAKNENRTADKVFV 490
Query: 504 VTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVP 563
++ND MRDH ++++ F RW+E+H R+ ++ N+ + ES +G VP
Sbjct: 491 ISNDLMRDHFWRMMVPQSFLRWRERHVCRVRITFPEENVDKKEYVFCSVTESASGD-RVP 549
Query: 564 V---ITGDDLEAPRQWLC 578
+ + E +WL
Sbjct: 550 ITRPVEDQQPETETKWLA 567
>gi|194384400|dbj|BAG64973.1| unnamed protein product [Homo sapiens]
Length = 567
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 104/507 (20%), Positives = 190/507 (37%), Gaps = 99/507 (19%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWF------------------------- 327
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
E+G C C + + I + P E E +
Sbjct: 328 -----------------------ESGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 364
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + S
Sbjct: 365 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKRS--- 421
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 422 -LRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 478
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 479 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 536
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 537 GD-SWHIPYDEDLVERCSCEVPTKWLC 562
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +E+FQQM+ +K+ P+ TFTS+ + E A +L++++ G PP + +Y
Sbjct: 297 LDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNC 356
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G+CK KA E+ A G VP + L+ A + D+ + L +L
Sbjct: 357 VVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQL 412
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ ++ Q+M++ + P+ T T V + + + A +LV++M G+ +Y
Sbjct: 55 LRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSA 114
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK D+A + M E G P ++++ A++VD+ + + ++
Sbjct: 115 LVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQM 170
>gi|375493513|ref|NP_001243607.1| mitochondrial ribonuclease P protein 3 isoform 2 [Homo sapiens]
gi|119586283|gb|EAW65879.1| KIAA0391, isoform CRA_b [Homo sapiens]
gi|119586285|gb|EAW65881.1| KIAA0391, isoform CRA_b [Homo sapiens]
gi|119586287|gb|EAW65883.1| KIAA0391, isoform CRA_b [Homo sapiens]
gi|168278599|dbj|BAG11179.1| KIAA0391 protein [synthetic construct]
Length = 567
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 103/507 (20%), Positives = 190/507 (37%), Gaps = 99/507 (19%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWF------------------------- 327
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
E+G C C + + I + P E E +
Sbjct: 328 -----------------------ESGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 364
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 365 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 420
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 421 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 478
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 479 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 536
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 537 GD-SWHIPYDEDLVERCSCEVPTKWLC 562
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLK 172
C K G V EA + + + G+ L Y++++ VC ++ +SNLGL
Sbjct: 270 CLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVC-------------KKPNSNLGL- 315
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+ ++M P+EATFTSV VA+ + A L ++M + G P L +
Sbjct: 316 ---ELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLM 372
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G+C GN D A + + E G+ P + S L++ ++ ++K E+ +++
Sbjct: 373 KGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMK 427
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA L D+ + G+ + YN ++ + C+ G+ +
Sbjct: 481 KGGKMDEACSLLDNMVNQGMVPNVVSYNDMI-LGHCRKGN---------------MDMAS 524
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F M+ + PN T++ + K D E A DL QM S I P ++ + G
Sbjct: 525 SVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGL 584
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK+G +A + + E G +P
Sbjct: 585 CKVGQMSEARDKLKNFLEEGFIP 607
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD +AL L+D S I + +N ++ CK G S +N L+ GF
Sbjct: 551 KKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGL-CKVGQMSEARDKLKN----FLEEGF 605
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
P+ T+ S+ + + + + A + ++M FG+ P + +Y + GF
Sbjct: 606 -----------IPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGF 654
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK D A + M E G+ + SAL+
Sbjct: 655 CKSNRIDLALKTRDEMREKGLELDVTAYSALI 686
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 56/134 (41%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ ++F QM++ + P + TF ++ A D +K G P +Y
Sbjct: 556 EKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSI 615
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GF K GN D A V M E GV P ++L+ + ++D + +R
Sbjct: 616 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGL 675
Query: 292 QVSESTFKIIEDWF 305
++ + + + D F
Sbjct: 676 ELDVTAYSALIDGF 689
>gi|40788241|dbj|BAA20845.2| KIAA0391 [Homo sapiens]
Length = 571
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 103/507 (20%), Positives = 190/507 (37%), Gaps = 99/507 (19%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 136 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 191
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 192 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 237
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 238 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 296
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF
Sbjct: 297 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWF------------------------- 331
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
E+G C C + + I + P E E +
Sbjct: 332 -----------------------ESGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 368
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 369 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 424
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 425 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 482
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 483 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 540
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 541 GD-SWHIPYDEDLVERCSCEVPTKWLC 566
>gi|297297693|ref|XP_001085026.2| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 3
[Macaca mulatta]
Length = 565
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 28/244 (11%)
Query: 354 ENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGP 407
E+G C C + + I + P E E + ++ + +F+ ++ P
Sbjct: 326 ESGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKKTTPQELKRFENFVKSCPP 385
Query: 408 FDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
FD VIDG NV + L VV++L + + + L++L + + Q K+
Sbjct: 386 FDIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLRLLVLGRKHMLRQSFQWRKD- 440
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
++ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 441 EMAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQR 497
Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPR 574
F +W++ HQ+ + G L Y V+Q + + SWH+P V+ E P
Sbjct: 498 LFFKWQQGHQLAIINGFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDVVERYSYEVPT 556
Query: 575 QWLC 578
+WLC
Sbjct: 557 KWLC 560
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 17/199 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EAL+L ++ GI L+ Y LL E G
Sbjct: 203 IDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL--------DGLCEEGR-------- 246
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K E+F+ M+ V PN+ T+T++ + ++ E A D++K+MK I P L YG
Sbjct: 247 MKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGT 306
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L+G C ++A + + ESG+ + L+ + + + +L + LV
Sbjct: 307 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLV 366
Query: 291 RQVSEST-FKIIEDWFDSV 308
+ ++ F++ + FD +
Sbjct: 367 DGLCKNNCFEVAKKLFDEM 385
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 18/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GD+ A L+ + G T YN L+ + LG
Sbjct: 63 IDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLI-----------------DGHGKLG 105
Query: 171 L-KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L IF+QM DP+ T+ ++ E AF+ + +MK+ G+ P + +Y
Sbjct: 106 LLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYS 165
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK G +A + M + P E ++L+ + A + + +++ +
Sbjct: 166 TFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEI 222
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L R F F+ M + + T+ + + D EMA L QMK G P + +Y
Sbjct: 39 LSRKF--FKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNS 96
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G KLG D+ + M ++ P+ +AL+ +++ K +E LH ++
Sbjct: 97 LIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA 154
>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
Length = 792
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V +AL L+D+ S+G+T + Y VL+ C + S+ + R+ L +E
Sbjct: 305 GEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMSDETYKLCRQMIEQGLLLSTYEF 364
Query: 178 ------------------FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
+++ D P+ T+ + + A +L +MK
Sbjct: 365 NLVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEA 424
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
G+ P + +Y L G+C+ G D+A ++ + M + G P E + L+K + K D
Sbjct: 425 GVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNA 484
Query: 280 YEILHRLRTLVRQVSESTFKII 301
Y +L+ +R + T+ I+
Sbjct: 485 YALLNEMRQNGVSCGDYTYNIL 506
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 123 ALRLYDDARSNGITLSQHHYNVL---LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
A L ++ R NG++ + YN+L LY+ + C + E+ +
Sbjct: 484 AYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVD-------------------EMLK 524
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+ +++ P T+ S+ V AF + +QM+ GI P + +Y + G+C+
Sbjct: 525 RFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTN 584
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
D A ++ ++ G+ P+ +A +
Sbjct: 585 CCDLAVKLLIYVRRDGIQPDIAAYNAFI 612
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E++ +M+ + V P++ TFT++ D + A L+ M+ + P + +Y +
Sbjct: 694 ALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLIN 753
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEE 260
+ G +A+++ M SGVVP++
Sbjct: 754 ACVRDGKLQEAFQLHDEMLSSGVVPDD 780
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A L +M G+ P R Y + G CKL + D+A +V M E+G P E S+++
Sbjct: 204 AVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVD 263
Query: 269 LSVDAKKVDKVYEI 282
+ V ++D+ +
Sbjct: 264 VLVKVGRMDEALRL 277
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLK 172
C K G V EA + + + G+ L Y++++ VC ++ +SNLGL
Sbjct: 230 CLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVC-------------KKPNSNLGL- 275
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+ ++M P+EATFTSV VA+ + A L ++M + G P L +
Sbjct: 276 ---ELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLM 332
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G+C GN D A + + E G+ P + S L++ ++ ++K E+ +++
Sbjct: 333 KGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMK 387
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA L D+ + G+ + YN ++ + C+ G+ +
Sbjct: 441 KGGKMDEACSLLDNMVNQGMVPNVVSYNDMI-LGHCRKGN---------------MDMAS 484
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F M+ + PN T++ + K D E A DL QM S I P ++ + G
Sbjct: 485 SVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGL 544
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK+G +A + + E G +P
Sbjct: 545 CKVGQMSEARDKLKNFLEEGFIP 567
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 56/134 (41%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ ++F QM++ + P + TF ++ A D +K G P +Y
Sbjct: 516 EKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGFIPSCMTYNSI 575
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GF K GN D A V M E GV P ++L+ + ++D + +R
Sbjct: 576 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGL 635
Query: 292 QVSESTFKIIEDWF 305
++ + + + D F
Sbjct: 636 ELDVTAYSALIDGF 649
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD +AL L+D S I + +N ++ CK G S +N L+ GF
Sbjct: 511 KKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGL-CKVGQMSEARDKLKN----FLEEGF 565
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
P+ T+ S+ + + + + A + ++M FG+ P + +Y + GF
Sbjct: 566 I-----------PSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGF 614
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK D A + M E G+ + SAL+
Sbjct: 615 CKSNRIDLALKTRDEMREKGLELDVTAYSALI 646
>gi|426248384|ref|XP_004017943.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2 [Ovis
aries]
Length = 568
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 102/491 (20%), Positives = 175/491 (35%), Gaps = 99/491 (20%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLK 172
C DV +++ + A++NGI Y++L+ Y+ C ++SE D
Sbjct: 152 CHSSLDVAKSVLAWVAAKNNGIV----GYDLLVKYLYLCVFHKQTSEIID---------- 197
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+++ M +T + R + + A L++ +K IP K ++Y +
Sbjct: 198 ----VYEIMKARYKRLESGAYTLLMRGLIYTDRWREALLLLEDLKKVMIPSK-KNYDDCI 252
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTL 289
G + + A+ + + +VP L A D K +K++ IL LR
Sbjct: 253 QGALFHQDVNVAWNLYQELLNHDIVPMLETLKAFFDFGKDMKDDQYSNKLHNILLYLRNN 312
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVER 349
ES I+ WF+S
Sbjct: 313 QLYPGESFAHSIKTWFES------------------------------------------ 330
Query: 350 TQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLG 403
G C C + + I + E E + ++ + +FQ ++
Sbjct: 331 ------GQCLGCGKTVESIHLSSEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFQNFVK 384
Query: 404 RHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
PFD VIDG NV + L VV+ L + + L +L GR
Sbjct: 385 YCPPFDVVIDGLNVAKMFPKARESQVLLNVVSHLAKQN------LQVLVLGRKHMLTQNS 438
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQL 516
+ ++ + + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 439 RWRRVEMEKMQKQASFFFADNISEDDPFLLYATLHSGNHCK--FITKDLMRDHRACLPDA 496
Query: 517 LGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDL 570
F +W++ HQ+ + G + Y V+Q + SWH+P ++
Sbjct: 497 KTQRLFFKWQQGHQLAIVSKHPGAKITFQHILSYDTVVQ-TTGDSWHIPYDDNLVERYSY 555
Query: 571 EAPRQWLCATR 581
E P +WLC R
Sbjct: 556 EVPTKWLCLHR 566
>gi|431907348|gb|ELK11321.1| Mitochondrial ribonuclease P protein 3 [Pteropus alecto]
Length = 568
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 32/249 (12%)
Query: 354 ENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGP 407
E+G C C + + I + P E E + ++ + +F+ ++ P
Sbjct: 329 ESGQCLGCGKTIESIHLSPEEYEYLKGKIMRDVIDGGDQYKKTTPQELKRFKNFVKYCPP 388
Query: 408 FDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
FD VIDG NV + L VV++L + + + +++L + + A+ K++
Sbjct: 389 FDIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLQVLVLGRKHMLTPCARWRKDE 444
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
++ + + + S DD + LYAT+ +CK +T D MRDH L
Sbjct: 445 --MEKVQKQASCFFADNISEDDPFLLYATLHSGSHCK--FITKDLMRDHKACLPDAKTQR 500
Query: 521 FFPRWKEKHQI----RLSVSRDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEA 572
F +W++ HQ+ RL S+ ++ Y V+Q + + SWH+P ++ E
Sbjct: 501 LFFKWQQGHQLAIINRLPGSKITFQHIL--SYDTVVQTTGD-SWHIPYDEDLVERYSYEV 557
Query: 573 PRQWLCATR 581
P +WLC R
Sbjct: 558 PTKWLCLHR 566
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 99/213 (46%), Gaps = 18/213 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + EA+RL ++ + ++ YN L+ C E+G E GF
Sbjct: 314 KQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCF--------EHGSSE--------EGF 357
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ ++M + PN T+ + + V K + V++M+ G P + +Y +
Sbjct: 358 KLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWH 417
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK+G D+A+ + MG G+ ++ L+ +L+ +K+D+ +++L R V E
Sbjct: 418 CKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDE 477
Query: 296 STF-KIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
++ +I +F A++ L WD K +E I
Sbjct: 478 VSYGTLIIGYFKHEKASQALRL-WDEMKEKEII 509
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 76/176 (43%), Gaps = 26/176 (14%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL---- 171
K G + EA RL D+ G+ + N +L C+ +R+ D L
Sbjct: 419 KVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRAL-CR---------ERKLDEAHDLLCSA 468
Query: 172 -KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+RG+ + +E ++ ++ E A L +MK I P + +Y
Sbjct: 469 RRRGYFV-----------DEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNS 517
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C++G T++A + + ESG+VP+E + ++ +V+K ++ +++
Sbjct: 518 MIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKM 573
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 16/193 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EAL+L ++ GI L+ Y LL E G
Sbjct: 402 IDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL--------DGLCEEGR-------- 445
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K E+F+ M+ V PN+ T+T++ + ++ E A D++K+MK I P L YG
Sbjct: 446 MKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGT 505
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L+G C ++A + + ESG+ + L+ + + + +L + L
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565
Query: 291 RQVSESTFKIIED 303
+E T+ + D
Sbjct: 566 LIATEVTYCALID 578
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 71/177 (40%), Gaps = 18/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GD+ A L+ + G T YN L+ + LG
Sbjct: 262 IDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLI-----------------DGHGKLG 304
Query: 171 L-KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L IF+QM DP+ T+ ++ E AF+ + +MK+ G+ P + +Y
Sbjct: 305 LLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYS 364
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK G +A + M + P E ++L+ + A + + +++ +
Sbjct: 365 TFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEI 421
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L R F F+ M + + T+ + + D EMA L QMK G P + +Y
Sbjct: 238 LSRKF--FKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNS 295
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G KLG D+ + M ++ P+ +AL+ +++ K +E LH ++
Sbjct: 296 LIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA 353
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNL 169
+D K G EAL L ++ G+ ++ Y L+ +C E+ + R ++ L
Sbjct: 542 MDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGL 601
Query: 170 ------------GLKRG--FEI----FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
GL + FE+ F +M+ + P++ +T++ + + + A +
Sbjct: 602 QPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALN 661
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L +M G+ L +Y ++G G KA + M GV+P+E L+K
Sbjct: 662 LRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYY 721
Query: 272 DAKKVDKVYEI 282
KVD+ E+
Sbjct: 722 ALGKVDEALEL 732
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F+ F +M V PN T+ + + A DL+ +MK GI P S+
Sbjct: 507 LDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNA 566
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ FC++ DKA + M GVVP+ ++L+K D +++D+ EIL
Sbjct: 567 PILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDERRIDEAKEIL 619
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 47/106 (44%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
FQQM D P+ T+ ++ + + A LV+QM+ GI P + +Y + GFC
Sbjct: 199 FQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCN 258
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G + A V M E GV P E L+ + K Y +L
Sbjct: 259 AGRPEDAVHVFDTMKEKGVSPNEASYRTLVHGAFRCLGRHKAYVML 304
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 16/179 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V +A + + R G+ + +N L+ S S+ G+ N
Sbjct: 428 IDCFVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLI--------SGYSKLGNVHNAK--- 476
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + ++ + P+ TFTS+ + AFD +M +G+ P +Y
Sbjct: 477 -----AVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNV 531
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ C G+ +KA ++ M + G+ P+ +A + KKVDK I + + L
Sbjct: 532 LMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRL 590
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/185 (18%), Positives = 76/185 (41%), Gaps = 21/185 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF--- 178
E + + S G L + +++ C+ KC S G ++ G GF+++
Sbjct: 334 EVVEVTKKMNSRGYLLDNAIFGIVVS-CAVKCLELSDLCGLLDDFVKKGGNPGFDVYIMV 392
Query: 179 -----------------QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
++M+ D + ++ V V + A +++K+M+ G+
Sbjct: 393 IKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIKEMREKGV 452
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P L ++ + G+ KLGN A V + E G++P+ ++L+ ++D ++
Sbjct: 453 LPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFD 512
Query: 282 ILHRL 286
+ +
Sbjct: 513 CFNEM 517
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ EA+RL + Y L+ CK G L +
Sbjct: 299 RAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSA-FCKMGR---------------LDDAY 342
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+FQQM+ +K+ P+ TFTS+ + E A +L++++ G PP + +Y + G+
Sbjct: 343 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 402
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
CK KA E+ A G VP + L+ A + D+ + L +L +
Sbjct: 403 CKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 455
>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
gi|194704512|gb|ACF86340.1| unknown [Zea mays]
Length = 637
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S+LG + + +F +MI ++P+ ++ +A+ V + PE A DL+ QM G+ P +
Sbjct: 358 SSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLGLCPNV 417
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ + G+C + + + A V M +SGV P + + K+ K E+L
Sbjct: 418 VTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFETPIWGYSEQKQPWKAEEVLQM 477
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAE 312
+R + +ST+ +I D + +V E
Sbjct: 478 MRETGVKPKQSTYCLIADAWKAVGLTE 504
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 1/140 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ QQM PN F ++ + + D ++ M+ FGI P + +Y
Sbjct: 293 LEEALRCVQQMKDAGSVPNVVIFNTLLKGFLDANDMAAVNKILGLMEKFGIKPDIVTYSH 352
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L F LG+ K V M E+G+ P+ S L K V A++ +K ++L ++ L
Sbjct: 353 QLNTFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFVRAQQPEKAEDLLLQMSHLG 412
Query: 291 RQVSESTF-KIIEDWFDSVD 309
+ TF +I W D
Sbjct: 413 LCPNVVTFTTVISGWCSVAD 432
>gi|328715603|ref|XP_001949258.2| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 1
[Acyrthosiphon pisum]
gi|328715605|ref|XP_003245671.1| PREDICTED: mitochondrial ribonuclease P protein 3-like isoform 2
[Acyrthosiphon pisum]
Length = 531
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 110/241 (45%), Gaps = 38/241 (15%)
Query: 355 NGVCCSCNERLVCIDIDPRETENFASS-LSNLACQREVRS-----DFNKFQEWLGRHGPF 408
NG C +CN+ L ++ + + LS++ + + + + + F++++ P+
Sbjct: 295 NGKCKNCNQVLEHAEVTNSDFKILQERFLSDVMIGKNIFNNSSPQELSDFKDFIEITAPY 354
Query: 409 DAVIDGANV-----GLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQI 463
D V+DG N+ G + H+ + + + + + K++ ++++ G +
Sbjct: 355 DVVVDGLNLAYAYRGKIGDHSLTKFVMKSFI--------EKKLKVLLI------GRKHLV 400
Query: 464 PKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV--NCKSLLVTNDEMRDHLFQLLG--- 518
K D + ++ T S DD + LYA + + ++T D MR H + LLG
Sbjct: 401 KMLGKEFDFIKKNAHIFFTNDLSKDDPFVLYAAMYSGIDTKILTRDLMRGHKY-LLGDAI 459
Query: 519 -TSFFPRWKEKHQIRLSVSRDGLNLLMPPP--YSIVIQESENGSWHVPVITGDDLEAPRQ 575
S F +W +KH++ L + R G +++ P Y QES NG WH+P + + P
Sbjct: 460 IKSIFQKWLQKHRLGLRI-RPGNEVIIKEPITYLQATQESANGIWHMPY---QEFKEPGS 515
Query: 576 W 576
W
Sbjct: 516 W 516
>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
Length = 792
Score = 62.4 bits (150), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 87/202 (43%), Gaps = 18/202 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V +AL L+D+ S+G+T + Y VL+ C + ++ + R+ L +E
Sbjct: 305 GEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEF 364
Query: 178 ------------------FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
+++ D P+ T+ + + A +L +MK
Sbjct: 365 NLVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEA 424
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
G+ P + +Y L G+C+ G D+A ++ + M + G P E + L+K + K D
Sbjct: 425 GVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAFDNA 484
Query: 280 YEILHRLRTLVRQVSESTFKII 301
Y +L+ +R + T+ I+
Sbjct: 485 YALLNEMRQNGVSCGDYTYNIL 506
Score = 45.1 bits (105), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 123 ALRLYDDARSNGITLSQHHYNVL---LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
A L ++ R NG++ + YN+L LY+ + C + E+ +
Sbjct: 484 AYALLNEMRQNGVSCGDYTYNILINGLYMVNRVCEVD-------------------EMLK 524
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+ +++ P T+ S+ V AF + +QM+ GI P + +Y + G+C+
Sbjct: 525 RFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQMRKKGITPNIVTYTSFIDGYCRTN 584
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
D A ++ ++ G+ P+ +A +
Sbjct: 585 CCDLAVKLLIYVRRDGIQPDIAAYNAFI 612
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A L +M G+ P R Y + G CKL + D+A +V M E+G P E S+++
Sbjct: 204 AVRLFDEMAGAGVKPDERVYAITISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVD 263
Query: 269 LSVDAKKVDKVYEI 282
+ V +++D+ +
Sbjct: 264 VLVKVRRMDEALRL 277
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E++ +M+ + V P++ TFT++ D + A L+ M+ + P + +Y +
Sbjct: 694 ALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLIN 753
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEE 260
+ G +A+++ M SGVVP++
Sbjct: 754 ACVRDGKLQEAFQLHDEMLSSGVVPDD 780
>gi|402875949|ref|XP_003901753.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 2 [Papio
anubis]
Length = 565
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 104/244 (42%), Gaps = 28/244 (11%)
Query: 354 ENGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGP 407
E+G C C + + I + P E E + + + +F+ ++ P
Sbjct: 326 ESGQCLGCGKTIESIQLSPEEYEFLKGRIMRDVIDGGDQYKNTTPQELKRFENFIKSCPP 385
Query: 408 FDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNK 467
FD VIDG NV + L VV++L + + + L++L + + Q K+
Sbjct: 386 FDIVIDGLNVAKMFPKARESQVLLNVVSQLAK----QNLRLLVLGRKHMLTQSFQWRKD- 440
Query: 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDH---LFQLLGTS 520
++ ++ + + S DD + LYAT+ +C+ +T D MRDH L
Sbjct: 441 EMAEVQKQASCFFADNI-SKDDPFLLYATLHSGNHCR--FITKDLMRDHKACLPDAKTQR 497
Query: 521 FFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP----VITGDDLEAPR 574
F +W++ HQ+ + G L Y V+Q + + SWH+P V+ E P
Sbjct: 498 LFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQTTGD-SWHIPYDEDVVERYSYEIPT 556
Query: 575 QWLC 578
+WLC
Sbjct: 557 KWLC 560
>gi|156408157|ref|XP_001641723.1| predicted protein [Nematostella vectensis]
gi|156228863|gb|EDO49660.1| predicted protein [Nematostella vectensis]
Length = 552
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 103/462 (22%), Positives = 167/462 (36%), Gaps = 89/462 (19%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+++ M ++ V E + R A++ E A + + +P RS+ P + G
Sbjct: 115 KLYAVMQSNYVSIGEGVRAILIRSYTARQMWEHAIAELSIEDNTQLPRHTRSFNPVIIGL 174
Query: 236 CKLGNTDKAYEV--------DAHMGESGVVPEEPELSALLKLSVDA-------------- 273
K G+ KA+E+ + + G+V L+ALL+ A
Sbjct: 175 AKYGHVSKAFELFERKNNIETSSKKDVGLVLNVELLNALLRACFIAPLGNVDGKDRSFGK 234
Query: 274 ------KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
K + + HRL + E +E S+ LN +K+ +
Sbjct: 235 YDTWNYKDTNDQTNLSHRLNSFDYSNEEQ----VE--LHSLGTKVFDFLNKSGNKLPSEV 288
Query: 328 VRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSN--- 384
W + S KWR QI++ G C C L + EN+ L N
Sbjct: 289 T-AVEEWFKNDPVLSWKWRT--CQINQTGFCNKCQANL-----RIKLAENYFQDLENEML 340
Query: 385 ------------LACQREVRSDFNKFQEWL-GRHGPFDAVIDGANVGLVN------QHNF 425
L ++ +F F+E L FD +IDG NV H F
Sbjct: 341 HVLEDPISIKERLNLSKKSHIEFVSFKEVLRSTKHHFDVIIDGQNVAFERARKAWGTHRF 400
Query: 426 SFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPG 485
++ ++ +V + + L++LHK + + L+ + +Y T
Sbjct: 401 NYRRIKNMV---AYFAAKNKTILLVLHKHSLEKDLSL-----NFLNSLKGLCEVYVTQTN 452
Query: 486 SNDDWYWLYATV-----NCKSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSR 537
NDD LYA N ++ +VT D+ RDH L Q L F +W +QI S+
Sbjct: 453 MNDDLLLLYACAINGMENDRTSIVTGDKWRDHRHLLPQELHWKFL-KWVRLNQITFKESK 511
Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCA 579
+G + V+Q+S WH P G W CA
Sbjct: 512 NGRLHFYRNFFDPVVQKSFK-RWHFPRTDG-------TWNCA 545
>gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Glycine max]
Length = 1092
Score = 62.0 bits (149), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G V +A Y RS + + +N L+ C+ ++G
Sbjct: 537 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACA--------QSG--------A 580
Query: 171 LKRGFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
L R F++ +M T +DP+ T ++ + E A ++ K ++ + I Y
Sbjct: 581 LDRAFDVLAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVY 640
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
A+ + G+ + A+ V M + G++P+E LSAL+ ++ AKK+D +++L R
Sbjct: 641 TIAINSCSQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAR 699
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 111 LDMCSKRGDVFEA---LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS 167
++C KR V EA +RL + LS +N+L+ VC+ SE +
Sbjct: 436 FNICKKRKAVKEAFDFIRLIPNP-----MLST--FNMLMSVCASSQDSEGA--------- 479
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
F++ Q + +++P+ +T++ ++ F++ +M + G+ P + +
Sbjct: 480 -------FQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHT 532
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
YG + G + G KA+ M V P+ +AL+ + +D+ +++L +
Sbjct: 533 YGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDVLAEM 591
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 19/219 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L C+K G V A +Y + I Y + + CS + GD E
Sbjct: 609 LKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSCS--------QTGDWE------ 654
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ M + P+E +++ +A + + AFD++++ + GI + SY
Sbjct: 655 --FAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGIMSYS- 711
Query: 231 ALFGFCKLG-NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+L G C N KA E+ ++ + ++ALL D + K E+L ++ L
Sbjct: 712 SLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFEMKGL 771
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIV 328
+ + TF I+ + D E + ++K ++G+V
Sbjct: 772 GLRPNSITFSILIVASEKKDDMEAAQMLLSLAK-KDGVV 809
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 24/177 (13%)
Query: 111 LDMCSKRGD---VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS 167
+ +C+ D F+ L+L DAR + Y L+ C+ K G
Sbjct: 467 MSVCASSQDSEGAFQVLQLLKDAR---LEPDCKLYTTLILTCA-KSGK------------ 510
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
+ FE+F +M+ V+PN T+ ++ AF M+S + P
Sbjct: 511 ---VDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 567
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVDKVYEI 282
+ + + G D+A++V A M + P+ + ALLK A +V++ E+
Sbjct: 568 FNALIAACAQSGALDRAFDVLAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEV 624
>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
Length = 892
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 19/186 (10%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
E +L H L KRG + +AL ++D R GI ++ + YN L+ N
Sbjct: 370 EVTYAILIHSL---CKRGMMDDALCMFDRMREKGIRVTVYPYNSLI-------------N 413
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
G ++D N RG + +M+ + P+ A+++ + K D A +L ++M G
Sbjct: 414 GYCQHD-NFHQARG--LLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAMELHREMARNG 470
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ + ++ + GFCK GN D+A + M +S VVP E + +++ V K +
Sbjct: 471 VSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAF 530
Query: 281 EILHRL 286
++ ++
Sbjct: 531 QLYDQM 536
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 132 SNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEA 191
S G+ S YNVL+Y G N+ L E+ M+ + +E
Sbjct: 223 SKGVKGSAVPYNVLMY-------------GLCRNNRVL---EAVEVKNSMVERGIVADEV 266
Query: 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251
T+ ++ E+ EMA ++ M S P + S + G K G+ DKA+ + H+
Sbjct: 267 TYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHL 326
Query: 252 GESGVVPEEPELSALL 267
GE G+VP +AL+
Sbjct: 327 GELGMVPNLFACNALI 342
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ EA RL+D + + ++ +NV++ C+ G+ +++ F
Sbjct: 487 KDGNMDEAARLFDKMIDSSVVPNEVTFNVMIE-GYCRVGN---------------VRKAF 530
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+++ QM+ + P+ T+ S+ + A + V +++ + S ++GF
Sbjct: 531 QLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGF 590
Query: 236 CKLGNTDKAYEVDAHMGESGV 256
CK G + Y + M GV
Sbjct: 591 CKEGRLTETYHIWDEMRARGV 611
>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 418
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ +E R+
Sbjct: 287 CKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRM 337
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ +F ++ + D + F L M++ G+ P + +Y + G CK D A E+
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
M ++G+VP + L+ +VD EI ++
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ SCK G L+ F
Sbjct: 288 KKGDLKQAQDLTDEMSMKGLKPDKITYTTLI-DGSCKEGH---------------LETAF 331
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P++ +Y + F
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK G+ ++ M G VP
Sbjct: 392 CKKGDVWTGSKLLKEMQRDGYVP 414
>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
Length = 697
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 75/151 (49%), Gaps = 20/151 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+DM SKRG + +AL L+ + G++ + + ++ Y C+ G+
Sbjct: 548 VDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGY---CRVGN------------- 591
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+KR + ++++M + V PN T+T + + +MA L+ MK + P +++Y
Sbjct: 592 --VKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTY 649
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ G+ ++ N D+AYEV M + G +P+
Sbjct: 650 TALIAGYQRIENIDRAYEVFDEMKKKGTLPD 680
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 57/117 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + +F++M + + +E FT++ + + A+ + K+MK + P +++Y
Sbjct: 557 MSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTC 616
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GFCKL D A + M + V P+ +AL+ + +D+ YE+ ++
Sbjct: 617 LVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDEMK 673
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 114 CSKRGDVFEALR-LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
C GD EA+R L+DD +++G + + + Y +++ + C +N D E S
Sbjct: 159 CLAEGDKLEAVRSLFDDLKNSGPSPNVYTYTIMI---NFYCKERHGQNIDMEQAS----- 210
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
I ++M +P T+ E A++ ++ ++S P + Y +
Sbjct: 211 ---LILEEMEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALI 267
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
GFC+ G D+A ++ M + G+ P+ S L+
Sbjct: 268 QGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILV 302
>gi|156540938|ref|XP_001603527.1| PREDICTED: mitochondrial ribonuclease P protein 3-like [Nasonia
vitripennis]
Length = 533
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 118/285 (41%), Gaps = 35/285 (12%)
Query: 319 DVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENF 378
D+ E I++ + G+ T I + G C C++ L + + +
Sbjct: 263 DIKPTEEVIMKYTNLYESFGYTAKP------TTISKRGECSHCSQVLQATTLSKSDFKLL 316
Query: 379 ASS-LSNLACQREV-----RSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNT 432
++S LSNL + V + ++ ++ P+D VIDG NV + L +
Sbjct: 317 STSVLSNLIVGKNVFCASSPQELKRYLLFVQTMKPYDVVIDGLNVAYGARKANEPGSLQS 376
Query: 433 VVNRLRQMSPSKRMPLVILHKGRVSGGPAQIP--KNKKLLDIWRDGGALYTTPPGSNDDW 490
V+N + ++ LV+ G A + N+ + I + ++ T S DD
Sbjct: 377 VLNVVNYFYNGRKRVLVM--------GRAHMNWWSNETMKAI-HEKADVFLTKNISQDDP 427
Query: 491 YWLYATV--NCKSLLVTNDEMRDHLFQLLGTSF---FPRWKEKHQIRLSVSRDGLNLLMP 545
Y L+ T+ ++ V+ D MR H +L + F RW+ Q + + + +
Sbjct: 428 YLLHVTLLSGPQTYFVSRDLMRQHKAKLDDVNLQIMFRRWQLSRQYKFTKEHKSHFVKLI 487
Query: 546 PPYSIVIQESEN-GSWHVPVITGDDLEAPRQ------WLCATRAR 583
PP + I +N +WH+P T DL P++ W+C ++ +
Sbjct: 488 PPLAFEISAQKNKANWHMPYTTSHDLLLPQEYTIPPNWICLSKKK 532
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V EA +L+ + S G+ + Y L+ CK G +K F +
Sbjct: 406 GKVVEARKLFSEMLSKGLKPDEVTYTALI-DGYCKAGE---------------MKEAFSL 449
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
QM+ + PN T+T++ + ++A +L+ +M G+ P + +Y + G CK
Sbjct: 450 HNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCK 509
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
+GN ++A ++ M +G P+ + ++ ++ K +E+L + Q + T
Sbjct: 510 VGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVT 569
Query: 298 FKIIEDWFDSVDAAEIG--VLNWDVSK 322
F ++ + F E G ++ W + K
Sbjct: 570 FNVLMNGFCMSGMLEDGERLIKWMLDK 596
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 16/178 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ +A L G+ + +NVL+ + C S E+G+R
Sbjct: 539 MDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLM---NGFCMSGMLEDGER------- 588
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + M+ + PN TF S+ + + + ++ K M + G+ P +Y
Sbjct: 589 ------LIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNI 642
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G CK N +A+ + M E G ++L+K KK ++ ++ +RT
Sbjct: 643 LIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRT 700
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 21/178 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---------ESSENG 161
+D K G++ EA L++ G+T + Y L+ CKCG E SE G
Sbjct: 434 IDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGL-CKCGEVDIANELLHEMSEKG 492
Query: 162 DRENDSNLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
+ N +++ ++ ++M P+ T+T++ + A
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAH 552
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+L++ M G+ P + ++ + GFC G + + M + G++P ++L+K
Sbjct: 553 ELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMK 610
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/165 (17%), Positives = 72/165 (43%), Gaps = 16/165 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
+ L+L ++ + G+ +Q+ YN ++ CK G + ++ + M
Sbjct: 305 KVLKLMEELQRKGLKPNQYTYNSIISFL-CKTGR---------------VVEAEQVLRVM 348
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
++ P+ +T++ + + + L +MK I P +Y + G C+ G
Sbjct: 349 KNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKV 408
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+A ++ + M G+ P+E +AL+ A ++ + + + +++
Sbjct: 409 VEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQM 453
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG----DRENDSNLGLKR 173
GD+ E RL ++G+ + Y+VL+ NG + +D+N
Sbjct: 173 GDLDEGFRLKSAMHASGVQPDVYTYSVLI-------------NGLCKESKMDDAN----- 214
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++
Sbjct: 215 --ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIY 272
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK G+ +A+++ M G+ P++ +AL+ +D +E HR R + +
Sbjct: 273 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFE--HRKRMIQENI 330
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 248 ALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALID 307
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 308 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 356
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKE-DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
F + I + P F ++ KE D +A + + +G+ P + SY + G+
Sbjct: 111 FYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYI 170
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+LG+ D+ + + + M SGV P+ S L+ K+D E+ +
Sbjct: 171 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEM 220
>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 418
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ + C E+ +
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLI---NGLCKESKMEDAN------------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ +E R+
Sbjct: 287 CKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRM 337
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ SCK G L+ F
Sbjct: 288 KKGDLKQAQDLTDEMSMKGLKPDKITYTTLI-DGSCKEGH---------------LETAF 331
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P++ +Y + F
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK G+ ++ M G VP
Sbjct: 392 CKKGDVWTGSKLLKEMQRDGYVP 414
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 89/193 (46%), Gaps = 17/193 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
MC + G + EA+ L+++ +S + + + Y V++ C ++ E G++
Sbjct: 638 MC-RIGKLDEAVNLWNECKSRDLVPNVYTYGVMI---DGYCKADKIEEGEK--------- 684
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+F +++T ++ N + ++ R + AF L M+S GIPP +Y +
Sbjct: 685 ----LFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 740
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G C +G + A + M + G++P +AL+ ++DKV +L + +
Sbjct: 741 HGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIH 800
Query: 293 VSESTFKIIEDWF 305
++ T+ ++ D +
Sbjct: 801 PNKITYTVMIDGY 813
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V +A++L+ D G++ + YN L++ CK G+ L F
Sbjct: 325 KGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGL-CKHGN---------------LDEAF 368
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++M+ D V+ T++ + + E A ++K+ G P Y + G+
Sbjct: 369 RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGY 428
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK+GN A + M G+ P L+++++ ++++ IL + + ++
Sbjct: 429 CKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINP 488
Query: 296 STFKIIEDWF 305
F I W
Sbjct: 489 GAFTTIIHWL 498
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ + +F+ M V P+ F++ E A L M+ G+ P + +Y
Sbjct: 295 LEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNN 353
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G CK GN D+A+ M + GV S L+ + +K ++ +L
Sbjct: 354 LIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVL 406
>gi|125525011|gb|EAY73125.1| hypothetical protein OsI_00999 [Oryza sativa Indica Group]
Length = 634
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S++G + + ++F +MI ++P+ ++ +A+ V + PE A +L++QM G+ P +
Sbjct: 377 SSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNV 436
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ + G+C + + A V A M ++GV P L+ + K+ K E+L
Sbjct: 437 VTFTTVISGWCSVADMGNAVRVYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQM 496
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAE 312
++ + ++T+ ++ D + +V E
Sbjct: 497 MQDAGVRPKQTTYCLVADAWKAVGLVE 523
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +QM V PN F ++ + + D D++ M+ FGI P + +Y
Sbjct: 312 LGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSH 371
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L +G+ K +V M E+G+ P+ S L K V A++ +K E+L ++ L
Sbjct: 372 QLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLG 431
Query: 291 RQVSESTF-KIIEDWFDSVD 309
+ + TF +I W D
Sbjct: 432 VRPNVVTFTTVISGWCSVAD 451
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168
H+L+ S G + + ++++D GI Y++L E +E
Sbjct: 371 HQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAE--------- 421
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
E+ +QM V PN TFT+V + D A + M+ G+ P LR++
Sbjct: 422 -------ELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAAMRDAGVRPNLRTF 474
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
++G+ +L KA EV M ++GV P++
Sbjct: 475 ETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQ 506
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYG 229
L+ + + +M DP+ T+ ++A ++ A +LV +M + G+ R++G
Sbjct: 241 LEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAGLRTSERTWG 300
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+C+ G +A M +SGV+P + LLK +DA + V ++L
Sbjct: 301 IIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVL 354
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 92/211 (43%), Gaps = 22/211 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKR 173
K G + EA ++++ G+ + Y L+ Y CK G +K
Sbjct: 394 KSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGY---CKAGE---------------MKE 435
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + QM+ + PN T+T++A + ++A +L+ +M G+ P + +Y +
Sbjct: 436 AFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVN 495
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK+GN ++ ++ M +G P+ + L+ ++ K +E+L + Q
Sbjct: 496 GLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQP 555
Query: 294 SESTFKIIEDWFDSVDAAEIG--VLNWDVSK 322
+ TF ++ + F E G ++ W + K
Sbjct: 556 TLVTFNVLMNGFCMSGMLEDGERLIEWMLEK 586
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 27/213 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ +A L + + + +NVL+ + C S E+G+R
Sbjct: 529 MDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLM---NGFCMSGMLEDGER------- 578
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + M+ + PN TF S+ + K + ++ K M G+ P +Y
Sbjct: 579 ------LIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNI 632
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT-- 288
+ G CK N +A+ + M E G AL++ KK + ++ +R
Sbjct: 633 LIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHG 692
Query: 289 LVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVS 321
LV + K I D F V+ E G NW+++
Sbjct: 693 LVAE------KDIYDIFVDVNYEE-G--NWEIT 716
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYN-VLLYVCSCKCGSESSENGDR-ENDSNLGLKRGF 175
G++ + L+L D+ + G+ ++ YN ++L +C +NG+ E + L R +
Sbjct: 291 GELDKVLKLVDELKGKGLKPDEYIYNNIILLLC---------KNGEVVEAEQLLRGMRKW 341
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F P+ +T+V + A L +M+ I P + +Y + G
Sbjct: 342 GVF---------PDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGI 392
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G +A E+ M G+ P+E +AL+ A ++ + + + +++
Sbjct: 393 CKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQM 443
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 60/133 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + ++ ++ + P+E + ++ L + A L++ M+ +G+ P Y
Sbjct: 293 LDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTT 352
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFCKLGN A ++ M +VP+ ++++ + K+ + E+ + +
Sbjct: 353 VISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG 412
Query: 291 RQVSESTFKIIED 303
+ E T+ + D
Sbjct: 413 LEPDEVTYTALID 425
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F IF+ +I D + P+ + ++ R + + A +V+QMK P R++ P +
Sbjct: 15 AFAIFEDVIRDGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPIIH 74
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
F K G KA +V M SG +P +AL+ V+ +++DK E++ + +
Sbjct: 75 AFAKAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRP 134
Query: 294 SESTFKIIEDWFDSV 308
+E T+ I D + S+
Sbjct: 135 NERTYTTIMDGYASL 149
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+++ ++F M P T+ ++ V K + A ++V +M GI P R+Y
Sbjct: 81 AIRKALDVFDMMRRSGCIPTVQTYNALILGLVEKRQMDKAVEVVDEMLLAGIRPNERTYT 140
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+ LG+T KA+E + + + G+ + ALLK + +++ + +
Sbjct: 141 TIMDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKACCKSGRIESALAVTKEMNA- 199
Query: 290 VRQVSESTFK---IIEDWFDSVDAAE 312
+ + +TF +I+ W D E
Sbjct: 200 -KNIPRNTFVYNILIDGWARRSDVWE 224
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 46/117 (39%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R I +QM ++ P TF + A D+ M+ G P +++Y
Sbjct: 47 MDRALRIVEQMKKERHRPTSRTFMPIIHAFAKAGAIRKALDVFDMMRRSGCIPTVQTYNA 106
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G + DKA EV M +G+ P E + ++ K +E R++
Sbjct: 107 LILGLVEKRQMDKAVEVVDEMLLAGIRPNERTYTTIMDGYASLGDTGKAFEYFSRIK 163
Score = 45.4 bits (106), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 24/198 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS-ESSENGDRE-NDSN 168
+D + GD +A + + G+ L + Y LL C CK G ES+ +E N N
Sbjct: 143 MDGYASLGDTGKAFEYFSRIKDEGLELDVYTYEALLKAC-CKSGRIESALAVTKEMNAKN 201
Query: 169 L------------GLKR------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
+ G R ++ QQM + V P+ T+TS D + A
Sbjct: 202 IPRNTFVYNILIDGWARRSDVWEAADLMQQMRQEGVQPDIHTYTSFVNACCKAGDMQKAM 261
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+ +++MK G+ P L+ P + +KA + M +SG+ P++ L+
Sbjct: 262 NTIQEMKRVGLNPMLKPI-PLSYTVGHASLPEKALKCFEEMKKSGLKPDKAVYHCLMTSL 320
Query: 271 VDAKKVDKVYEI--LHRL 286
+ V + Y I +HR+
Sbjct: 321 LSRATVAEDYIITGIHRV 338
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD EA +L+++ R G + YN LL CK G+ + +++
Sbjct: 233 GDSSEARKLFEEMRERGCAVDVVAYNSLLEAL-CKGGN---------------VDEAYKL 276
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M ++ + P+ +++ R D AF ++ +M+ + + P + +Y + CK
Sbjct: 277 FREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCK 336
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+AY++ M E GV P+ +A+ D +V+K ++ R+
Sbjct: 337 SEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRM 385
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ E F + + +V PN T++ + R D A L ++M+ G + +Y
Sbjct: 201 VKQAQEFFDK-VNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNS 259
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
L CK GN D+AY++ MG +G+ P+ S ++ + + +++L R+R
Sbjct: 260 LLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMR 316
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ K G+V EA +L+ + SNG+ Y++ + C+ ND
Sbjct: 261 LEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRA-YCEV-----------ND---- 304
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F++ +M + PN T+ + + E + A+ L+ +M G+ P L SY
Sbjct: 305 IHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNA 364
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
C +KA + + M + +P+ + +LK+ + + D+V ++
Sbjct: 365 IQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDV 416
>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
Length = 682
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F F++M V PN T+ + + A DL+ +MK G+ P S+
Sbjct: 505 LDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNA 564
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ FC++ DKA ++ M GVVP+ ++L+K D ++V+K EIL
Sbjct: 565 LILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEIL 617
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
FQQM D P+ T+ S+ + + A LV+QM+ GI P + +Y + GFC
Sbjct: 197 FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 256
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G ++A+ + M E GV P E L+ + DK Y +L
Sbjct: 257 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRML 302
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 18/153 (11%)
Query: 153 CGSESSEN---GDRENDSNLGLKR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
CG E SE E+ LGL R E+F QM + P+ A +T+ R
Sbjct: 147 CGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYTAYLRF--------- 197
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+QM + G P +Y + G C+ G D+A + M G+ P + L+
Sbjct: 198 -----QQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVD 252
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+A +V++ + +L +++ SE+T++ +
Sbjct: 253 GFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTL 285
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ + ++ P+ TFTS+ + AF ++M +G+ P ++Y + C
Sbjct: 476 VLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLC 535
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G+ +KA ++ M GV P+ +AL+ +KVDK +I + +
Sbjct: 536 SAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 585
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F F++M V PN T+ + + A DL+ +MK G+ P S+
Sbjct: 519 LDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNA 578
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ FC++ DKA ++ M GVVP+ ++L+K D ++V+K EIL
Sbjct: 579 LILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEIL 631
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
FQQM D P+ T+ S+ + + A LV+QM+ GI P + +Y + GFC
Sbjct: 211 FQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 270
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G ++A+ + M E GV P E L+ + DK Y +L
Sbjct: 271 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRML 316
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 153 CGSESSEN---GDRENDSNLGLKR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
CG E SE E+ LGL R E+F QM + P+ A + ++ +V +
Sbjct: 147 CGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDT 206
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A+ +QM + G P +Y + G C+ G D+A + M G+ P + L+
Sbjct: 207 AYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVD 266
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+A +V++ + +L +++ SE+T++ +
Sbjct: 267 GFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTL 299
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ + ++ P+ TFTS+ + AF ++M +G+ P ++Y + C
Sbjct: 490 VLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLC 549
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G+ +KA ++ M GV P+ +AL+ +KVDK +I + +
Sbjct: 550 SAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 599
>gi|115435438|ref|NP_001042477.1| Os01g0228400 [Oryza sativa Japonica Group]
gi|17385740|dbj|BAB78680.1| putative leaf protein [Oryza sativa Japonica Group]
gi|113532008|dbj|BAF04391.1| Os01g0228400 [Oryza sativa Japonica Group]
gi|215740499|dbj|BAG97155.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 636
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 76/147 (51%), Gaps = 1/147 (0%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S++G + + ++F +MI ++P+ ++ +A+ V + PE A +L++QM G+ P +
Sbjct: 377 SSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLGVRPNV 436
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ + G+C + + A V A M ++GV P L+ + K+ K E+L
Sbjct: 437 VTFTTVISGWCSVADMGNAVRVYAAMRDAGVRPNLRTFETLIWGYSELKQPWKAEEVLQM 496
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAE 312
++ + ++T+ ++ D + +V E
Sbjct: 497 MQDAGVRPKQTTYCLVADAWKAVGLVE 523
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +QM V PN F ++ + + D D++ M+ FGI P + +Y
Sbjct: 312 LGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVLGLMEQFGIKPDIVTYSH 371
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L +G+ K +V M E+G+ P+ S L K V A++ +K E+L ++ L
Sbjct: 372 QLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAEELLRQMGRLG 431
Query: 291 RQVSESTF-KIIEDWFDSVD 309
+ + TF +I W D
Sbjct: 432 VRPNVVTFTTVISGWCSVAD 451
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168
H+L+ S G + + ++++D GI Y++L E +E
Sbjct: 371 HQLNALSSMGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGYVRAQQPEKAE--------- 421
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
E+ +QM V PN TFT+V + D A + M+ G+ P LR++
Sbjct: 422 -------ELLRQMGRLGVRPNVVTFTTVISGWCSVADMGNAVRVYAAMRDAGVRPNLRTF 474
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
++G+ +L KA EV M ++GV P++
Sbjct: 475 ETLIWGYSELKQPWKAEEVLQMMQDAGVRPKQ 506
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYG 229
L+ + + +M DP+ T+ ++A ++ A +LV +M + G+ R++G
Sbjct: 241 LEEAWRVVARMRASGADPDVVTYNTLASAYAKNDETWRAEELVVEMAQQAGLRTSERTWG 300
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+C+ G +A M +SGV+P + LLK +DA + V ++L
Sbjct: 301 IIVGGYCREGRLGEALRCVRQMKDSGVLPNVIVFNTLLKGFLDANDMAAVDDVL 354
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 55/113 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F F++M V PN T+ + + A DL+ +MK G+ P S+
Sbjct: 519 LDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNA 578
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ FC++ DKA ++ M GVVP+ ++L+K D ++V+K EIL
Sbjct: 579 LILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEIL 631
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
FQQM D P+ T+ S+ + + A LV+QM+ GI P + +Y + GFC
Sbjct: 211 FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 270
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G ++A+ + M E GV P E L+ + DK Y +L
Sbjct: 271 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRML 316
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 153 CGSESSEN---GDRENDSNLGLKR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
CG E SE E+ LGL R E+F QM + P+ A + ++ +V +
Sbjct: 147 CGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDT 206
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A+ +QM + G P +Y + G C+ G D+A + M G+ P + L+
Sbjct: 207 AYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVD 266
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+A +V++ + +L +++ SE+T++ +
Sbjct: 267 GFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTL 299
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ + ++ P+ TFTS+ + AF ++M +G+ P ++Y + C
Sbjct: 490 VLKMLMEHGFMPDIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLC 549
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G+ +KA ++ M GV P+ +AL+ +KVDK +I + +
Sbjct: 550 SAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDM 599
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD EA +L+++ R G + YN LL CK G+ + +++
Sbjct: 206 GDSSEARKLFEEMRERGCAVDVVAYNSLLEAL-CKGGN---------------VDEAYKL 249
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M ++ + P+ +++ R D AF ++ +M+ + + P + +Y + CK
Sbjct: 250 FREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCK 309
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+AY++ M E GV P+ +A+ D +V+K ++ R+
Sbjct: 310 SEKVDEAYQLLDEMIERGVSPDLWSYNAIQAFHCDHCEVNKALRLISRM 358
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ E F + + +V PN T++ + R D A L ++M+ G + +Y
Sbjct: 174 VKQAQEFFDK-VNVEVMPNAKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNS 232
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
L CK GN D+AY++ MG +G+ P+ S ++ + + +++L R+R
Sbjct: 233 LLEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMR 289
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ K G+V EA +L+ + SNG+ Y++ + C+ ND
Sbjct: 234 LEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRA-YCEV-----------ND---- 277
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F++ +M + PN T+ + + E + A+ L+ +M G+ P L SY
Sbjct: 278 IHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSYNA 337
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
C +KA + + M + +P+ + +LK+ + + D+V ++
Sbjct: 338 IQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDV 389
>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Glycine max]
Length = 1012
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 24/197 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESS------ENGD 162
L+ + G + EA L D S GI L +Y+ L+ Y K G+ES+ E +
Sbjct: 488 LNNLKRSGGMKEAQSLIKDILSKGIYLDVFNYSSLMDGYF---KEGNESAALSVVQEMTE 544
Query: 163 RENDSNL----GLKRGF---------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA 209
++ ++ L +G +F +MI + P+ T+ SV + E A
Sbjct: 545 KDMQFDVVAYNALTKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENA 604
Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
DL+ +MKS+G+ P + +Y + G CK G +K V M G VP LLK
Sbjct: 605 LDLLNEMKSYGVMPNMVTYNILIGGLCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKA 664
Query: 270 SVDAKKVDKVYEILHRL 286
++K D + +I +L
Sbjct: 665 YSRSRKADAILQIHKKL 681
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 85/207 (41%), Gaps = 23/207 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN------------GD 162
S++ D L+++ G+ L+Q YN L+ V C+ G N D
Sbjct: 668 SRKADAI--LQIHKKLVDMGLNLNQMVYNTLITVL-CRLGMTKKANVVLTEMVIKGISAD 724
Query: 163 --------RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
R + +++ F + QM+ + PN T+ ++ A LV
Sbjct: 725 IVTYNALIRGYCTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVS 784
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+M+ G+ P +Y + G ++GN + ++ M G +P + L++ A
Sbjct: 785 EMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAG 844
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKII 301
K+ + E+L+ + T R + ST+ ++
Sbjct: 845 KMRQARELLNEMLTRGRIPNSSTYDVL 871
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
++M +K G V +AL + +S GI + Y++L+ + L
Sbjct: 476 INMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLI-------------------NGFLK 516
Query: 171 LK---RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
LK F +F+ +I D + P+ + ++ + + + A +VK+M+ P R+
Sbjct: 517 LKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRT 576
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ P + GF + G +A E+ M SG +P +AL+ V+ +K++K EIL +
Sbjct: 577 FMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMA 636
Query: 288 TLVRQVSESTFKII 301
E T+ I
Sbjct: 637 LAGVSPDEHTYTTI 650
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R EIF M P TF ++ V K E A +++ +M G+ P +Y
Sbjct: 590 MRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTT 649
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ LG+T KA+E M G+ + ALLK + ++ + +
Sbjct: 650 IMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMN--A 707
Query: 291 RQVSESTFK---IIEDW 304
+++ +TF +I+ W
Sbjct: 708 QKIPRNTFVYNILIDGW 724
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 22/198 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS-ESSENGDRENDSNLGLKRGF- 175
GD +A + R+ G+ L Y LL C CK G +S+ RE ++ + F
Sbjct: 658 GDTGKAFEYFTKMRNEGLQLDVFTYEALLKAC-CKSGRMQSALAVTREMNAQKIPRNTFV 716
Query: 176 ------------------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++ QQM + V P+ T+TS D A +++M+
Sbjct: 717 YNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEME 776
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+ P +++Y + G+ +KA + +G+ P++ L+ + V
Sbjct: 777 AAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHCLMTSLLSRATVA 836
Query: 278 KVYEILHRLRTLVRQVSE 295
+ Y I + ++ R++ E
Sbjct: 837 EAY-IYSGILSICREMIE 853
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + F+ M +DP+ +TS+ D E A V++M GI L +Y
Sbjct: 310 MHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSI 369
Query: 231 ALFGFCKLGNTDKA 244
+ GF K GN + A
Sbjct: 370 VVGGFAKFGNAEAA 383
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 16/135 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGD++EA L G+ H Y + C CK G
Sbjct: 721 IDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINAC-CKAGD--------------- 764
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + ++M V PN T+T++ PE A +++K G+ P Y
Sbjct: 765 MLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVYHC 824
Query: 231 ALFGFCKLGNTDKAY 245
+ +AY
Sbjct: 825 LMTSLLSRATVAEAY 839
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 89/193 (46%), Gaps = 17/193 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
MC + G + EA+ L+++ +S + + + Y V++ C ++ E G++
Sbjct: 571 MC-RIGKLDEAVNLWNECKSRDLVPNVYTYGVMI---DGYCKADKIEEGEK--------- 617
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+F +++T ++ N + ++ R + AF L M+S GIPP +Y +
Sbjct: 618 ----LFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLI 673
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G C +G + A + M + G++P +AL+ ++DKV +L + +
Sbjct: 674 HGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIH 733
Query: 293 VSESTFKIIEDWF 305
++ T+ ++ D +
Sbjct: 734 PNKITYTVMIDGY 746
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 19/171 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCS------CKC-GSESSENGDREN-- 165
+ G+ EA +L+DD RS GI + Y+ L++ +C+ KC E + G N
Sbjct: 643 RNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVV 702
Query: 166 --------DSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
LG + + + Q+M + + PN+ T+T + D + A L+ +M
Sbjct: 703 CYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEM 762
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
GI P +Y GFCK G ++ +++ +M + G+ +E + L+
Sbjct: 763 VGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITYTTLV 813
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V +A++L+ D G++ + YN L++ CK G+ L F
Sbjct: 258 KGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGL-CKHGN---------------LDEAF 301
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++M+ D V+ T++ + + E A ++K+ G P Y + G+
Sbjct: 302 RFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGY 361
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK+GN A + M G+ P L+++++ ++++ IL + + ++
Sbjct: 362 CKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINP 421
Query: 296 STFKIIEDWF 305
F I W
Sbjct: 422 GAFTTIIHWL 431
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ + +F+ M V P+ F++ E A L M+ G+ P + +Y
Sbjct: 228 LEKSYWVFETM-RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNN 286
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G CK GN D+A+ M + GV S L+ + +K ++ +L
Sbjct: 287 LIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVL 339
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
PE + + L D ++GD+ +A R+ D+ + GI + +N LL CK G
Sbjct: 309 PEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGV-CKAGK------ 361
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+++ EI Q+M+ V+P+ T++ + ++ AF+L+ +MK +
Sbjct: 362 ---------MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 412
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P + +Y + G C+ GN + M +G+ P + L+ +V++
Sbjct: 413 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 472
Query: 282 ILHRLR 287
IL R+R
Sbjct: 473 ILERMR 478
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +MI + P T+ ++ + + D E AF + +M + GI L + L G C
Sbjct: 298 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVC 357
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G +KA E+ M E GV P+ S L++ + + + +E+L ++ +
Sbjct: 358 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 417
Query: 297 TFKII 301
T+ +I
Sbjct: 418 TYSVI 422
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 21/159 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+D K G++ A L+DD G+T + Y ++ Y CK + ++
Sbjct: 668 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY---CKSKNPTA---------- 714
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
F++ ++M+ V P+ + + +E E A DL ++M G + S+
Sbjct: 715 -----AFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SF 768
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G +A + M E +P ++L+
Sbjct: 769 NTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 807
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G+V +A +L ++ GI YN+L+ CK G ++R
Sbjct: 638 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL-CKAGE---------------IERAK 681
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F + + PN T+ ++ ++P AF L+++M G+PP Y L
Sbjct: 682 NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFC 741
Query: 236 CKLGNTDKAYEVDAHMGESG 255
CK +KA ++ M E G
Sbjct: 742 CKEEKFEKALDLFQEMLEKG 761
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D SK G++ A R +++ S G+ + Y L+ CK G+
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIE-GHCKEGN--------------- 571
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F +F+ +++ +V + T++ + AF + +++ G+ P +Y
Sbjct: 572 VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNS 631
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ G CK GN DKA ++ M G+ P+
Sbjct: 632 LISGSCKQGNVDKASQLLEEMCIKGINPD 660
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---------ESSENGDRE 164
C K G V E +L ++ GI + YN+LL+ C G E +NG+
Sbjct: 487 CCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGL-CNMGKIEEAGGLWHECKKNGNFP 545
Query: 165 NDSNLGL-----------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
+ G+ + G ++FQ+M+T K++ N + ++ R + AF L
Sbjct: 546 DAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLR 605
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
M+S GIP +Y + G +G D A ++ M + G+ P +AL+
Sbjct: 606 DDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKL 665
Query: 274 KKVDKVYEILHRL 286
++ KV IL +
Sbjct: 666 GQMHKVDSILQEM 678
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 19/191 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL-KRG 174
+ G++ EA RL DD RS GI + Y+ L++ SN+GL
Sbjct: 594 ENGNMREAFRLRDDMRSRGIPQTSATYSSLIH-----------------GLSNIGLVDSA 636
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ +M + + PN +T++ ++++M + P +Y + G
Sbjct: 637 NQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMING 696
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
CKLGN A ++ M + G+VP+ +AL K+++ ++ + T +
Sbjct: 697 HCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLD 756
Query: 295 ESTF-KIIEDW 304
+ T+ +I+ W
Sbjct: 757 DITYTTLIDGW 767
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 52/116 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K +++F M V P+ F+++ + A +L ++M+ G+ P + +Y
Sbjct: 178 VKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNN 237
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK G D+A++ M + V P L+ V ++ D+ IL +
Sbjct: 238 IIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEM 293
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 60/128 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F+ ++M ++V P+ T+ + V E + A ++K+M G P Y
Sbjct: 248 LDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNT 307
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C++GN A ++ M +G+ P ++L++ + +++ +L + T
Sbjct: 308 LIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGG 367
Query: 291 RQVSESTF 298
+++ TF
Sbjct: 368 GVINQGTF 375
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 16/179 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
++ K G +A +++D+ R G++ + YN L+ G E + N++N
Sbjct: 275 MNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLI-------GGLCREM--KANEAN-- 323
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+ QM +D ++PN T+ ++ A L + +KS G+ P L +Y
Sbjct: 324 -----EVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNI 378
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GFCK G+T A +V M E G+ P + + L+ + ++K ++ + L
Sbjct: 379 LVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEEL 437
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 17/205 (8%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP V+ L D C K+G++ +A L+ + G+ ++ Y VL++ +N
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLF--------KN 246
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
G + K+GFE++++M V PN T+ V + AF + +M+ G
Sbjct: 247 GIK--------KQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERG 298
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ + +Y + G C+ ++A EV M G+ P + L+ +K+ K
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKAL 358
Query: 281 EILHRLRTLVRQVSESTFKIIEDWF 305
+ L++ S T+ I+ F
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGF 383
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
+AL L D +S G++ S YN+L+ CK G S ++ ++M
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILV-SGFCKKGDTSGAG---------------KVVKEM 399
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ P++ T+T + ++ E A L M+ G+ P + +Y + GFC G
Sbjct: 400 EERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRM 459
Query: 242 DKAYEVDAHMGESGVVPEE 260
++A + M E P E
Sbjct: 460 NEASRLFKSMVEKKFEPNE 478
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++ ++ +A++L G+T H Y+VL++ K R N+++
Sbjct: 415 IDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIK---------GRMNEAS-- 463
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM-AFDLVKQMKSFGIPPKLRSYG 229
+F+ M+ K +PNE + ++ L KE A L ++M+ +PP + SY
Sbjct: 464 -----RLFKSMVEKKFEPNEVIYNTMV-LGYCKEGSSYRALRLFREMEEKELPPNVASYR 517
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ CK + +A + M +SG+ P + L+ + + D+
Sbjct: 518 YMIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLISRAKNDS 561
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
KV + +F V + + E +FDL+ +++ FG P + Y + G CK G +KA
Sbjct: 158 KVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKA 217
Query: 245 YEVDAHMGESGVVPEEPELSALL 267
++ MG+ G+V E + L+
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLI 240
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + R++G+ + Y+VL+ CK NG
Sbjct: 183 KLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGL-CKESRMDEANG-------------- 227
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + + PN TFT++ ++A D+ +QM + G P + +Y ++G
Sbjct: 228 -LFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A + M G+ P++ + L+ S ++ +E+ R+
Sbjct: 287 CKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERM 337
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 17/186 (9%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G + A+ +Y + G + YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ + +M + P++ T+T++ + + D E AF+L ++M I
Sbjct: 292 ---------LKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
Y +FG C+ G A ++ M G+ P++ + ++ V K E
Sbjct: 343 RLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASE 402
Query: 282 ILHRLR 287
+L ++
Sbjct: 403 LLREMQ 408
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL ++G + Y++L+ CK G N
Sbjct: 183 KLGDLDEGFRLKSAMHASGAQPDVYTYSILINGL-CKEGKLDEAN--------------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ E ++A ++ KQM S G+ P L +Y ++G
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G + +++ M +G+ P++ + L+ S ++ E+ +++
Sbjct: 287 CKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKM 337
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ +F ++ + D + F L M + G P + +Y + G CK G D+A E+
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
M ++G+VP + L+ +KVD EI ++
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM 267
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 17/186 (9%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
PE + + L D ++GD+ +A R+ D+ + GI + +N LL CK G
Sbjct: 318 PEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGV-CKAGK------ 370
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+++ EI Q+M+ V+P+ T++ + ++ AF+L+ +MK +
Sbjct: 371 ---------MEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 421
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P + +Y + G C+ GN + M +G+ P + L+ +V++
Sbjct: 422 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 481
Query: 282 ILHRLR 287
IL R+R
Sbjct: 482 ILERMR 487
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +MI + P T+ ++ + + D E AF + +M + GI L + L G C
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVC 366
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G +KA E+ M E GV P+ S L++ + + + +E+L ++ +
Sbjct: 367 KAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVL 426
Query: 297 TFKII 301
T+ +I
Sbjct: 427 TYSVI 431
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 21/159 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+D K G++ A L+DD G+T + Y ++ Y CK + ++
Sbjct: 677 IDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY---CKSKNPTA---------- 723
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
F++ ++M+ V P+ + + +E E A DL ++M G + S+
Sbjct: 724 -----AFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV-SF 777
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G +A + M E +P ++L+
Sbjct: 778 NTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLI 816
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G+V +A +L ++ GI YN+L+ CK G ++R
Sbjct: 647 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL-CKAGE---------------IERAK 690
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F + + PN T+ ++ ++P AF L+++M G+PP Y L
Sbjct: 691 NLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFC 750
Query: 236 CKLGNTDKAYEVDAHMGESG 255
CK +KA ++ M E G
Sbjct: 751 CKEEKFEKALDLFQEMLEKG 770
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D SK G++ A R +++ S G+ + Y L+ CK G+
Sbjct: 537 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIE-GHCKEGN--------------- 580
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F +F+ +++ +V + T++ + AF + +++ G+ P +Y
Sbjct: 581 VTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNS 640
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ G CK GN DKA ++ M G+ P+
Sbjct: 641 LISGSCKQGNVDKASQLLEEMCIKGINPD 669
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EA L S+G+ Y +++ ENG
Sbjct: 521 VDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHA--------HLENGR-------- 564
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++G EIF +M++ + P+ T+T + K E AF +M+ GI P + +Y
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G CK+ D+AY A M E G+ P + + L+
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILI 661
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD ++G++ A +L + + GI Y +L+ SCK GS
Sbjct: 416 LDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN-GSCKMGS--------------- 459
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E F +M+ + ++ + + + + D AF L ++M + G PP L Y
Sbjct: 460 LSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNV 519
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CKLGN ++A E+ M GV+P+ ++++ ++ ++ K EI + +
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEM 575
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD A L ++ + G YNV++ CK G+ L+
Sbjct: 491 KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGL-CKLGN---------------LEEAS 534
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ Q+M++D V P+ T+TS+ + ++ +M S G+ P + +Y + G
Sbjct: 535 ELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGH 594
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G ++A+ + M E G++P ++L+ +++D+ Y +
Sbjct: 595 AGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEM 645
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ +F +MI ++ P+ + R+ K+ A ++ + M FGI P + +Y
Sbjct: 180 VEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L +CK G + ++ + M G P + + L+ + ++ ++ +
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299
Query: 291 RQVSESTFK-IIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG 331
+VS T+ +I +F+ G+L +S E +++G
Sbjct: 300 LKVSAYTYNPLIYGYFNK------GMLAEALSLQEEMVLKGA 335
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+R F F +M + PN T+ S+ + A++ +M GI P SY
Sbjct: 600 LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTI 659
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ C +GN +A + M + GV P+ SALLK
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-LKR 173
SK+G+ +A L + G+ +S + YN L+Y N G L
Sbjct: 280 SKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIY-----------------GYFNKGMLAE 322
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ ++M+ P AT+ S A + M + + P + SY ++
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382
Query: 234 GFCKLGNTDKAY 245
G+C+LGN KA+
Sbjct: 383 GYCRLGNLMKAF 394
>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 418
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGL-CK--------ASKMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 49/110 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F + + P+ +F ++ + D + F L M++ G+ + +Y + G C
Sbjct: 158 VFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLC 217
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K D A E+ M ++G+VP + L+ ++VD EI ++
Sbjct: 218 KASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQM 267
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL ++G + Y++L+ CK G N
Sbjct: 183 KLGDLDEGFRLKSAMHASGAQPDVYTYSILINGL-CKEGKLDEAN--------------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ E ++A ++ KQM S G+ P L +Y ++G
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G + +++ M +G+ P++ + L+ S ++ E+ +++
Sbjct: 287 CKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKM 337
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ +F ++ + D + F L M + G P + +Y + G CK G D+A E+
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
M ++G+VP + L+ +KVD EI ++
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM 267
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 27/192 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK----- 172
G V EAL+L D+ S G+ YN ++ CK E + E NL LK
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIR-GMCK---EGMVDRAFEMVRNLELKGCEPD 297
Query: 173 ------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
G ++ +M ++K DPN T++ + E A +L+K
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK 357
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
MK G+ P SY P + FC+ G D A E M G +P+ + +L
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNG 417
Query: 275 KVDKVYEILHRL 286
K D+ EI +L
Sbjct: 418 KADQALEIFGKL 429
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + +M+++ +DP+E T+ S+ + + AF+L+ M+S P + +Y L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL-------------LKLSVDAKKVDKV 279
GFCK + A V M +G P E + L ++L+ D ++D +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAI 575
Query: 280 YEI----LHRLRTL--VRQVSESTF 298
E LHR L V Q S TF
Sbjct: 576 SEYSFKRLHRTFPLLNVLQRSSQTF 600
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K + +A R+ D RS + YN+++ GS S L
Sbjct: 170 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMI-------GSLCSRGK---------LDLAL 213
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ Q+++D P T+T + + + + A L+ +M S G+ P + +Y + G
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
CK G D+A+E+ ++ G P+ + LL+ ++ K
Sbjct: 274 CKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 16/186 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + EA+ L + G+T + Y+ L+ C+ G L
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI-AAFCREGR---------------LDVAI 388
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E + MI+D P+ + +V + A ++ ++ G P SY
Sbjct: 389 EFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
G+ +A + M +G+ P+E ++++ VD+ +E+L +R+ S
Sbjct: 449 WSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSV 508
Query: 296 STFKII 301
T+ I+
Sbjct: 509 VTYNIV 514
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +MI + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F + + P+ +F ++ + D + F L M++ G+ P + +Y + G C
Sbjct: 158 VFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLC 217
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K D A E+ M ++G+VP + L+ +VD EI ++
Sbjct: 218 KESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 27/192 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK----- 172
G V EAL+L D+ S G+ YN ++ CK E + E NL LK
Sbjct: 238 GGVDEALKLLDEMLSRGLKPDMFTYNTIIR-GMCK---EGMVDRAFEMIRNLELKGCEPD 293
Query: 173 ------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
G ++ +M ++K DPN T++ + E A +L+K
Sbjct: 294 VISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK 353
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
MK G+ P SY P + FC+ G D A E M G +P+ + +L
Sbjct: 354 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNG 413
Query: 275 KVDKVYEILHRL 286
K D+ EI +L
Sbjct: 414 KADQALEIFGKL 425
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + +M+++ +DP+E T+ S+ + + AF+L+ M+S P + +Y L
Sbjct: 452 RALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVL 511
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
GFCK + A +V M +G P E + L++ A + E+ + L +
Sbjct: 512 LGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDL-VRINA 570
Query: 293 VSESTFKIIEDWF 305
+SE +FK + F
Sbjct: 571 ISEYSFKRLHRTF 583
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K + +A R+ D RS + YN+++ GS S L
Sbjct: 166 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMI-------GSLCSRGK---------LDLAL 209
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ Q+++D P T+T + + + + A L+ +M S G+ P + +Y + G
Sbjct: 210 KVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGM 269
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
CK G D+A+E+ ++ G P+ + LL+ ++ K
Sbjct: 270 CKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGK 309
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/205 (20%), Positives = 78/205 (38%), Gaps = 26/205 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + EA+ L + G+T + Y+ L+ C+ G L
Sbjct: 341 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI-AAFCREGR---------------LDVAI 384
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E + MI+D P+ + +V + A ++ ++ G P SY
Sbjct: 385 EFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 444
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
G+ +A + M +G+ P+E ++++ VDK +E+L +R+ S
Sbjct: 445 WSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSV 504
Query: 296 STFKI----------IEDWFDSVDA 310
T+ I IED D +D+
Sbjct: 505 VTYNIVLLGFCKAHRIEDAIDVLDS 529
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 105/231 (45%), Gaps = 30/231 (12%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C R + +A L+D R+ G+ Y+++++ CK D+NL
Sbjct: 520 LCKSR-RINDAFLLFDRMRAAGVMPDVVTYSIVIHS-FCK-------------DNNL--D 562
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
F++ ++M K P+ T++++ + AFD+ ++M G P L +Y +
Sbjct: 563 SAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLI 622
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR----- 287
G CK+ ++A E+ M + P+ + L+ +A ++++ + +L ++
Sbjct: 623 DGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCL 682
Query: 288 -------TLVRQVSES-TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
TL+R + ++ +++E ++A E G N + +++ ++RG
Sbjct: 683 PDRMTYGTLLRALQKTNNLELVEQLLKEMEATEEGQWNANGARLHRFVIRG 733
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+ ++M PN T+ ++ + + D E A +++ M G PP +Y
Sbjct: 351 LDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYST 410
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ GFCK G +A+++ M G P+ LS L+ A +D E+L
Sbjct: 411 IISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELL 463
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK + +A+RL ++ NG + YN +L+ C + EN
Sbjct: 241 SKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHG---FCKANRVENA------------- 284
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +QM+T P+ ++T+V + + A ++ +M G P + +YG + G
Sbjct: 285 LWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDG 344
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
FC++G+ D A E+ M E G P + ++ + +++ +++L +
Sbjct: 345 FCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMM 396
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 120/299 (40%), Gaps = 39/299 (13%)
Query: 45 MHSFTKPITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE 104
+ FT +T + + G L F +T E +T T + + R + P+
Sbjct: 802 LERFTGKLTTTVVGKVLQGVRNGDAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPK 861
Query: 105 GVL---RHKLDMCS--------------KRGDVFEALRLYDDARSNGITLSQHHYNVLLY 147
L R+KL CS + GD+ A L + +G+ + +NV++
Sbjct: 862 DALQVYRNKL-CCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIK 920
Query: 148 -VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKED 205
+CS R+ DS L E+F++M + P+ T++++ V
Sbjct: 921 GLCSA-----------RKLDSAL------ELFKEMEESGSCPPDVFTYSTIVDSLVKSGK 963
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
+ A LV+ M S G P + +Y L G CK G D+A + M SG P +
Sbjct: 964 VDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNT 1023
Query: 266 LLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE--IGVLNWDVSK 322
++ ++D+ Y +L + Q + T+ ++ D F AE IG++ V K
Sbjct: 1024 IIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK 1082
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R +++F QM++D + P++ T++ V + A ++++ M G P +YG
Sbjct: 1245 VDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGT 1304
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFCK GN DKA E+ + G P+ S +
Sbjct: 1305 LIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFI 1341
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA L ++ G + Y VLL CKCG G
Sbjct: 1030 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA-FCKCGKAEDAIG-------------- 1074
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ + M+ PN T+ S+ + K++ E A L+ M G P + SY + G
Sbjct: 1075 -LVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK + + M + VP+ + ++ +VD YE+ + ++
Sbjct: 1134 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQ 1185
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G + +QM+++ P+ TF ++ ++A++L ++ G P L +Y +
Sbjct: 1142 GVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVH 1201
Query: 234 GFCKLGNTDKA-YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G CK D+A Y + + G P+ + ++ +K+VD+ Y++ ++ +
Sbjct: 1202 GLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLA 1261
Query: 293 VSESTFKII 301
+ T+ I+
Sbjct: 1262 PDDVTYSIV 1270
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M + P+ T+ ++ + + A L+++M G P + SY L GFCK
Sbjct: 219 FREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCK 277
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
+ A + M G P+ + ++ +VD+ ++ ++ Q + T
Sbjct: 278 ANRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVIT 337
Query: 298 FKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
+ + D F +G L+ V VR+ RG
Sbjct: 338 YGTLVDGF-----CRVGDLDGAVELVRKMTERG 365
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYGPAL 232
+E+F + PN T+ S+ + A L+++M + G P + +Y +
Sbjct: 1177 AYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVI 1236
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G CK D+AY++ M G+ P++ S ++
Sbjct: 1237 DGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVI 1271
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 27/192 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK----- 172
G V EAL+L D+ S G+ YN ++ CK E + E NL LK
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIR-GMCK---EGMVDRAFEMVRNLELKGSEPD 297
Query: 173 ------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
G ++ +M ++K DPN T++ + E A +L+K
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK 357
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
MK G+ P SY P + FC+ G D A E M G +P+ + +L
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNG 417
Query: 275 KVDKVYEILHRL 286
K D+ EI +L
Sbjct: 418 KADQALEIFGKL 429
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + +M+++ +DP+E T+ S+ + + AF+L+ M+S P + +Y L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL-------------LKLSVDAKKVDKV 279
GFCK + A V M +G P E + L ++L+ D ++D +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAI 575
Query: 280 YEI----LHRLRTL--VRQVSESTF 298
E LHR L V Q S TF
Sbjct: 576 SEYSFKRLHRTFPLLNVLQRSSQTF 600
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K + +A R+ D RS + YN+++ GS S L
Sbjct: 170 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMI-------GSLCSRGK---------LDLAL 213
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ Q+++D P T+T + + + + A L+ +M S G+ P + +Y + G
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
CK G D+A+E+ ++ G P+ + LL+ ++ K
Sbjct: 274 CKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGK 313
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 16/186 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + EA+ L + G+T + Y+ L+ C+ G L
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI-AAFCREGR---------------LDVAI 388
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E + MI+D P+ + +V + A ++ ++ G P SY
Sbjct: 389 EFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
G+ +A + M +G+ P+E ++++ VD+ +E+L +R+ S
Sbjct: 449 WSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSV 508
Query: 296 STFKII 301
T+ I+
Sbjct: 509 VTYNIV 514
>gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera]
Length = 1550
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C + G V +A Y RS + + +N L+ C ++G
Sbjct: 1004 IDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACG--------QSG--------A 1047
Query: 171 LKRGFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M T +DP+ T ++ + + A ++ K + + I Y
Sbjct: 1048 VDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEVY 1107
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
A+ ++G+ + AY V M GVVP+E LSAL+ ++ A K+D +E++ R
Sbjct: 1108 TIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEAR 1166
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ +C+ D A ++ R G+ Y L+ C+ K G
Sbjct: 934 MSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCA-KSGK--------------- 977
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F +M+ +V+PN T+ ++ AF M+S + P +
Sbjct: 978 VDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNA 1037
Query: 231 ALFGFCKLGNTDKAYEVDAHM-GESGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ + G D+A++V A M E+ + P+ + AL+K +A +VD+ E+ +
Sbjct: 1038 LITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQ 1097
Query: 289 L-------VRQVSESTFKIIEDW 304
V ++ S+ I DW
Sbjct: 1098 YNIKGTPEVYTIAVSSHSQIGDW 1120
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS----- 155
E E V LD K G V EA L++D R T + H+ LLY C+ G
Sbjct: 223 EPDEHVFGCLLDALCKNGSVKEAASLFEDMRIR-FTPTLKHFTSLLY-GWCREGKLMEAK 280
Query: 156 -------ESSENGDRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARLA 200
E+ D +NL + +++ ++M + +PN +FT++ +
Sbjct: 281 YVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQAL 340
Query: 201 VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
AK+ E A + +M+S G P +Y + GFCK G K YE+ +M + G +P
Sbjct: 341 CAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNP 400
Query: 261 PELSALLKLSVDAKKVDKVYEILHRLRTL 289
++ +++++ E++ +R +
Sbjct: 401 MTYLHIMAAHEKKEELEECIELMEEMRKI 429
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C+K+ + EA+R++ + +S G Y L+ CK G +
Sbjct: 340 LCAKK-KMEEAMRVFFEMQSCGCPADAVTYTTLI-SGFCKWGK---------------IS 382
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+G+E+ MI PN T+ + KE+ E +L+++M+ G P L Y +
Sbjct: 383 KGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVI 442
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVP 258
CKLG + V M +G+ P
Sbjct: 443 RLACKLGEIKEGVRVWNEMEATGLSP 468
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 16/170 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + EA + D +GI YN+L+ C+CG+ K+ F +
Sbjct: 390 GKMDEADGMIKDMGDSGIVPDSITYNILIN-GYCRCGNA---------------KKAFNL 433
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+MI+ + P T+TS+ + + + A DL +++ G P L + + G C
Sbjct: 434 HDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCA 493
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
GN D+A+ + M + +VP+E + L++ KV++ E+L ++
Sbjct: 494 NGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMK 543
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 93/215 (43%), Gaps = 20/215 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCS----CKCGSESSENGDRENDS------ 167
G+ +A L+D+ S GI + Y L+YV S K + E RE S
Sbjct: 425 GNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMF 484
Query: 168 ---------NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
N L R F + ++M + P+E T+ ++ + + E A +L+K+MK
Sbjct: 485 NALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKR 544
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
GI P SY + G+ K G+ + A+ + M G P +AL++ ++ D
Sbjct: 545 RGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDL 604
Query: 279 VYEILHRLRTLVRQVSEST-FKIIEDWFDSVDAAE 312
E+L + + +ST F +IE D++E
Sbjct: 605 AEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSE 639
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK+ + M V PN T+ +V ++ E A ++ MK+ G+ P +YG
Sbjct: 252 LKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGS 311
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G CK G ++A + M E G++P + L+
Sbjct: 312 LISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL-- 171
CS RG V A + D ++ G+ + Y L+ CK G +G E +GL
Sbjct: 282 CS-RGRVEGARMVLDIMKNRGVEPDSYTYGSLIS-GMCKGGKLEEASGILEKMKEIGLLP 339
Query: 172 ------------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
+ F +M+ + P +T+ + + + A ++
Sbjct: 340 TAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMI 399
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K M GI P +Y + G+C+ GN KA+ + M G+ P ++L+
Sbjct: 400 KDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLI 453
>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rehmannii]
Length = 420
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL R++G+ + Y+VL+ CK ES + D+N
Sbjct: 178 RLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGL-CK---ESXMD-----DAN------- 221
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P J +Y ++G
Sbjct: 222 ELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGL 281
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ ++A+ + M G+ P++ + L+ +D +E HR R + +
Sbjct: 282 CKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFE--HRKRMIQENI 337
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 342
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 319
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 320 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 368
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+++ +K G + +AL + ++ GITL+++ Y++L+ YV + GD N
Sbjct: 308 INLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYV----------QLGDFAN--- 354
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
F +F+ M ++P+ T+ + + A L+ +MK+ G P +++Y
Sbjct: 355 -----AFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTY 409
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ GF K G+ AY+ + M +G P + ++ V ++D+ ++ +
Sbjct: 410 ITIIDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMEL 469
Query: 289 LVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVRE 325
Q + ++ + F S+ EIG+ + +V E
Sbjct: 470 AGVQPNFRSYTTLMQGFASI--GEIGLAFKCLKRVNE 504
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
F + I + P T+ + L A + K+MK+ GI +Y + G
Sbjct: 286 FHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDG 345
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
+ +LG+ A+ V M E+G+ P+ + LLK ++++ + ++L R++T +
Sbjct: 346 YVQLGDFANAFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPT 405
Query: 295 ESTFKIIEDWF 305
T+ I D F
Sbjct: 406 IQTYITIIDGF 416
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 16/151 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L C K G + A+ + ++ G+ ++ + +N LL ++ GD
Sbjct: 518 LKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLL--------DGWAQRGD-------- 561
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + I Q+M + P+ ++TS D + A + +++MK + P L++Y
Sbjct: 562 MWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTI 621
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ G+ + + +KA M +G++P++P
Sbjct: 622 LIHGWTSVSHPEKALICYDEMKAAGLIPDKP 652
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 18/178 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GDV A + + + G + YNV+++ N LG
Sbjct: 413 IDGFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMH-----------------NLVQLG 455
Query: 171 -LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+ R + +M V PN ++T++ + + + +AF +K++ P + SY
Sbjct: 456 QIDRAASVIDEMELAGVQPNFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYA 515
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
L CK G A V M +GV + LL + + Y I+ ++R
Sbjct: 516 SLLKACCKAGRMQNAIAVTEEMAFAGVPMNNYIFNTLLDGWAQRGDMWEAYGIMQKMR 573
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 98 ARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGS 155
AR SP V L D C ++GD +A RL+D+ I + Y +L+ +C S
Sbjct: 186 ARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245
Query: 156 ESSENGDRENDSNL------------------GLKRGFEIFQQMITDKVDPNEATFTSVA 197
E+ +S + +K+ E++Q+M+ D + PN TF +
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
++ A + M SFG+ P + Y + G+CK GN +A + + + + ++
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365
Query: 258 PEEPELSALLKLSVDAKKVDKVYEILHRLR 287
P+ S L+K ++++ +L ++
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMK 395
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K+G ++Y D + G + + Y L+ C R+ D
Sbjct: 165 LDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCC------------RQGD---- 208
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F +F +MI K+ P +T + R + A + + M++ G+ P L +Y
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNT 268
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK+ + KA E+ M G++P L+
Sbjct: 269 MMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EAL L+ + + I Y++L+ CG + E D
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI---KGLCGVDRMEEAD-------- 388
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ Q+M PN T+ ++ + + E A ++ QM GI P + ++
Sbjct: 389 -----GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G + A + M G++P+ +AL+
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+D K ++ A + D S G+ + YN L+ Y CK G+
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY---CKAGN------------- 348
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
L + ++ ++ P+ T++ + + + E A L+++MK G P +Y
Sbjct: 349 --LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTY 406
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+CK GN +KA EV + M E G+ P S L+ A K++
Sbjct: 407 NTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ E+ QM ++PN TF+++ E A L +M G+ P + +Y
Sbjct: 419 MEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTA 478
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRLRT 288
+ G K GNT +A+ + M E+G+ P LS L+ L D + D + L + T
Sbjct: 479 LIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGT 537
>gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Vitis vinifera]
Length = 1115
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C + G V +A Y RS + + +N L+ C ++G
Sbjct: 569 IDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACG--------QSG--------A 612
Query: 171 LKRGFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M T +DP+ T ++ + + A ++ K + + I Y
Sbjct: 613 VDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQYNIKGTPEVY 672
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
A+ ++G+ + AY V M GVVP+E LSAL+ ++ A K+D +E++ R
Sbjct: 673 TIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEAR 731
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 81/203 (39%), Gaps = 25/203 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ +C+ D A ++ R G+ Y L+ C+ K G
Sbjct: 499 MSVCATSQDSAGAFQVLQLVREAGLKADCKLYTTLISTCA-KSGK--------------- 542
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F +M+ +V+PN T+ ++ AF M+S + P +
Sbjct: 543 VDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNA 602
Query: 231 ALFGFCKLGNTDKAYEVDAHM-GESGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ + G D+A++V A M E+ + P+ + AL+K +A +VD+ E+ +
Sbjct: 603 LITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACTNAGQVDRAREVYKMIDQ 662
Query: 289 L-------VRQVSESTFKIIEDW 304
V ++ S+ I DW
Sbjct: 663 YNIKGTPEVYTIAVSSHSQIGDW 685
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+ + M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE--HRKRMIQENI 348
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A L+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + +E +AL+ SVDA+K+
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGC-CKEGD---------------LDSAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + +E +T++ + A ++++M S G+ P R+Y + F
Sbjct: 338 EHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 16/190 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA R++ + + GI + + Y++++ C+CG + R
Sbjct: 210 RAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSL-CRCGQ---------------ITRAH 253
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+IF +M+ PN T+ S+ R+ V E + QMK G P +Y +
Sbjct: 254 DIFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETH 313
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK N + A +V M + G P + L V+ + + +++ L + +
Sbjct: 314 CKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMKELNCEANT 373
Query: 296 STFKIIEDWF 305
T+ + F
Sbjct: 374 VTYNTLMKMF 383
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
CK G+ +A ++ M G+ P++ + L+ S ++ +E
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++ CK
Sbjct: 90 RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMH-SFCK 148
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G ++ +F + + P+ +F ++ + D F L
Sbjct: 149 EGE---------------IRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + +Y + G CK D A E+ M ++G+VP + L+
Sbjct: 194 KNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 NGRVDLAMEIYKQM 267
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS----- 155
E E V LD K G V EA L++D R T + H+ LLY C+ G
Sbjct: 190 EPDEHVFGCLLDALCKNGSVKEAASLFEDMRIR-FTPTLKHFTSLLY-GWCREGKLMEAK 247
Query: 156 -------ESSENGDRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARLA 200
E+ D +NL + +++ ++M + +PN +FT++ +
Sbjct: 248 YVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQAL 307
Query: 201 VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
AK+ E A + +M+S G P +Y + GFCK G K YE+ +M + G +P
Sbjct: 308 CAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNP 367
Query: 261 PELSALLKLSVDAKKVDKVYEILHRLRTL 289
++ +++++ E++ +R +
Sbjct: 368 MTYLHIMAAHEKKEELEECIELMEEMRKI 396
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C+K+ + EA+R++ + +S G Y L+ CK G +
Sbjct: 307 LCAKK-KMEEAMRVFFEMQSCGCPADAVTYTTLI-SGFCKWGK---------------IS 349
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+G+E+ MI PN T+ + KE+ E +L+++M+ G P L Y +
Sbjct: 350 KGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVI 409
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVP 258
CKLG + V M +G+ P
Sbjct: 410 RLACKLGEIKEGVRVWNEMEATGLSP 435
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 171 LKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK E+F++M++ D++ P+ T+ ++ E + A +++ MK G P + +Y
Sbjct: 252 LKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYS 311
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GFCK G ++A EV M G+ P+ + L+ A +VD+ E+L +R
Sbjct: 312 ALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMREN 371
Query: 290 VRQVSESTFKII 301
+ TF +I
Sbjct: 372 KCRADTVTFNVI 383
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 22/201 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
++M +K G V +AL + S GI + Y++L+ + L
Sbjct: 455 INMYTKMGKVSKALEVSKMMESAGIKHNMKTYSMLI-------------------NGFLK 495
Query: 171 LK---RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
LK F +F+ +I D + P+ + ++ + + + A +VK+M+ P R+
Sbjct: 496 LKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRT 555
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ P + GF + G +A E+ M SG +P +AL+ V+ ++++K EIL +
Sbjct: 556 FMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMA 615
Query: 288 TLVRQVSESTFKIIEDWFDSV 308
E T+ I + + ++
Sbjct: 616 LAGVSPDEHTYTTIMNGYAAL 636
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 78/203 (38%), Gaps = 22/203 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR---- 173
GD +A + R+ G+ L Y LL C CK G S S + R
Sbjct: 637 GDTGKAFEYFTKLRNEGLELDVFTYEALLKAC-CKSGRMQSALAVTREMSAQNIPRNTFV 695
Query: 174 ----------------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++ QQM + V P+ T+TS D A +++M+
Sbjct: 696 YNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEME 755
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+ P +++Y + G+ +KA M +G+ P++ L+ + V
Sbjct: 756 ALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTSLLSRATVA 815
Query: 278 KVYEILHRLRTLVRQVSESTFKI 300
+ Y I + ++ R++ ES +
Sbjct: 816 EAY-IYSGILSICREMIESELTV 837
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R EIF M P TF ++ V K E A +++ +M G+ P +Y
Sbjct: 569 MRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTT 628
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ LG+T KA+E + G+ + ALLK
Sbjct: 629 IMNGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLK 666
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + F+ M + P+ +TS+ D E A V++MK G+ L +Y
Sbjct: 318 MHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSI 377
Query: 231 ALFGFCKLGNTDKAYEVD 248
+ GF K+GN D++ +D
Sbjct: 378 VVGGFAKIGNADQSCNMD 395
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + G+ H Y + C CK G
Sbjct: 700 IDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINAC-CKAGD--------------- 743
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + Q+M V PN T+T++ PE A ++MK G+ P Y
Sbjct: 744 MLRATKTIQEMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHC 803
Query: 231 ALFGFCKLGNTDKAY 245
+ +AY
Sbjct: 804 LMTSLLSRATVAEAY 818
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 75/187 (40%), Gaps = 30/187 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC--- 151
KK ARRE G++ + ++RGD+ A + ++ R GI S H Y L++ +
Sbjct: 298 KKPARREF--GLM---VGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRD 352
Query: 152 -----KCGSESSENGDREN-----------------DSNLGLKRGFEIFQQMITDKVDPN 189
C + E G + D + + R + ++M + +D
Sbjct: 353 MEEALSCVRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAP 412
Query: 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249
+ ++ + E + K++K G P + SYG + + K+G KA EV
Sbjct: 413 IDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSK 472
Query: 250 HMGESGV 256
M +G+
Sbjct: 473 MMESAGI 479
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 111 LDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
+D+ K+G +E L L+++ ++ GI ++ YN + +C GS E
Sbjct: 159 IDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTA--ITACASGSLCEE---------- 206
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
E+F QM + P+ T+ ++ + A +++K+M+S G P + +Y
Sbjct: 207 ----ATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYN 262
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
L F + G + A E+ M G+ P+ ++LL A KV++ EI +++RT
Sbjct: 263 ELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRT 321
>gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1173
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 18/190 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G V +A Y RS + + +N L+ C+ ++G
Sbjct: 627 IDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACA--------QSG--------A 670
Query: 171 LKRGFEIFQQMITD--KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M + + P+ TF ++ + E A ++ K ++ + I Y
Sbjct: 671 MARAFDVIAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVY 730
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
A+ + G+ + A V M + GV+P+E +SAL+ ++ AKK++ ++IL + R
Sbjct: 731 TIAINSCSQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARK 790
Query: 289 LVRQVSESTF 298
Q+ T+
Sbjct: 791 EGVQIGIMTY 800
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 21/207 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C+K G V A +Y + I S Y + + CS + GD E
Sbjct: 699 MKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSCS--------QTGDWE------ 744
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ M V P+E +++ +A + E AFD+++Q + G+ + +Y
Sbjct: 745 --FARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGIMTYS- 801
Query: 231 ALFGFC-KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+L G C K N +A E+ ++ +V ++ALL D + K E+L ++ L
Sbjct: 802 SLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSEMKGL 861
Query: 290 VRQVSESTFKII---EDWFDSVDAAEI 313
+ TF I+ + D ++AA++
Sbjct: 862 GLCPNSITFSILIVASEKKDDMEAAQM 888
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 33/186 (17%), Positives = 80/186 (43%), Gaps = 26/186 (13%)
Query: 111 LDMCSKR---GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS 167
++C K+ + F+ +RL + TLS +N+L+ VC+ SE +
Sbjct: 526 FNICKKQKAVNEAFDYVRLIPNP-----TLST--FNMLMSVCASSQDSEGA--------- 569
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
F++ Q + ++DP+ +T++ ++ F++ +M + G+ P + +
Sbjct: 570 -------FQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEVFHKMVNSGVEPNVHT 622
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
YG + G + G KA+ M V + +AL+ + + + ++++ +
Sbjct: 623 YGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDVIAEME 682
Query: 288 TLVRQV 293
++ +
Sbjct: 683 AEIQPI 688
>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
Length = 561
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 19/186 (10%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
E +L H L KRG + +AL ++D R GI ++ + YN L+ N
Sbjct: 86 EVTYAILIHSL---CKRGMMEDALCMFDRMREKGIRMTVYPYNSLI-------------N 129
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
G +++ N RG + +M+ + P+ A+++ + K D A +L ++M
Sbjct: 130 GYCKHN-NFHQARG--LLNEMVAKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNA 186
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ + ++ + GFCK GN D+A + M ES +VP E + +++ + K +
Sbjct: 187 VSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIRKAF 246
Query: 281 EILHRL 286
++ ++
Sbjct: 247 QLYDQM 252
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+ + M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE--HRKRMIQENI 348
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A L+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + +E +AL+ SVDA+K+
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGC-CKEGD---------------LDSAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + +E +T++ + A ++++M S G+ P R+Y + F
Sbjct: 338 EHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLM 429
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ +E R+
Sbjct: 287 CKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRM 337
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++
Sbjct: 90 RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMH----- 144
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
S E R S +F + + P+ +F ++ + D + F L
Sbjct: 145 --SFVKEGEIRLAQS---------VFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + +Y + G CK D A E+ M ++G+VP + L+
Sbjct: 194 KNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 NGRVDLAMEIYKQM 267
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KLDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN +FT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ +E R+
Sbjct: 287 CKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRM 337
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++ CK
Sbjct: 90 RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMH-SFCK 148
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G ++ +F + + P+ +F ++ + D F L
Sbjct: 149 EGE---------------IRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + +Y + G CK D A E+ M ++G+VP + L+
Sbjct: 194 KNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 DGRVDLAMEIYKQM 267
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V A+ +Y S ++ YN L+Y CK NGD
Sbjct: 248 IDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL-CK-------NGD-------- 291
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK+ ++ +M + P++ T+T++ + + D E AF+ K+M I +Y
Sbjct: 292 LKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTA 351
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ G C+ G + A ++ M G+ PE
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLKPE 380
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KIDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK G+ +A+ + M G+ P++ + L+ +D +E HR R +
Sbjct: 293 CKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFE--HRKRMI 344
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A L+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + ++ +AL+ SVDA+K+
Sbjct: 326 GCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKM 374
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK +GD L F
Sbjct: 294 KKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGC-CK-------DGD--------LDTAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + ++ +T++ + A ++++M S G+ P R+Y + F
Sbjct: 338 EHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EA L S+G+ Y +++ ENG
Sbjct: 521 VDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHA--------HLENGR-------- 564
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++G EIF +M++ + P+ T+T + K E AF +M+ GI P + +Y
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G CK+ D+AY A M E G+ P + + L+
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILI 661
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD ++G++ A +L + + GI Y +L+ SCK GS
Sbjct: 416 LDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVN-GSCKMGS--------------- 459
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E F +M+ + ++ + + + + D AF L ++M + G PP L Y
Sbjct: 460 LSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNV 519
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CKLGN ++A E+ M GV+P+ ++++ ++ ++ K EI + +
Sbjct: 520 VVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEM 575
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD A L ++ + G YNV++ CK G+ L+
Sbjct: 491 KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGL-CKLGN---------------LEEAS 534
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ Q+M++D V P+ T+TS+ + ++ +M S G+ P + +Y + G
Sbjct: 535 ELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGH 594
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G ++A+ + M E G++P ++L+ +++D+ Y +
Sbjct: 595 AGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEM 645
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/162 (19%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ +F +MI ++ P+ + R+ K+ A ++ + M FGI P + +Y
Sbjct: 180 VEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNT 239
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L +CK G + ++ + M G P + + L+ + ++ ++ +
Sbjct: 240 LLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTG 299
Query: 291 RQVSESTFK-IIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG 331
+VS T+ +I +F+ G+L +S E +++G
Sbjct: 300 LKVSAYTYNPLIYGYFNK------GMLAEALSLQEEMVLKGA 335
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+R F F +M + PN T+ S+ + A++ +M GI P SY
Sbjct: 600 LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTI 659
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ C +GN +A + M + GV P+ SALLK
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 18/132 (13%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-LKR 173
SK+G+ +A L + G+ +S + YN L+Y N G L
Sbjct: 280 SKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIY-----------------GYFNKGMLAE 322
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ ++M+ P AT+ S A + M + + P + SY ++
Sbjct: 323 ALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIY 382
Query: 234 GFCKLGNTDKAY 245
G+C+LGN KA+
Sbjct: 383 GYCRLGNLMKAF 394
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++
Sbjct: 90 RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMH----- 144
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
S E R S +F + + P+ +F ++ + D + F L
Sbjct: 145 --SFVKEGEIRLAQS---------VFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + +Y + G CK D A E+ M ++G+VP + L+
Sbjct: 194 KNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 NGRVDLAMEIYKQM 267
>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Brachypodium distachyon]
Length = 886
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 88/215 (40%), Gaps = 22/215 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENG 161
LD K+G V EA RL + + YN LL CK G +E S+ G
Sbjct: 309 LDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNALLNN-MCKNGMFSEADRLVNEMSDKG 367
Query: 162 DRENDSNLGL------KRGFE-----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
N+ + KRG + +M V + S+ K+D +MA
Sbjct: 368 LEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAM 427
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+ +M G+ P SY P + G C+ G+ A E+ M E GV +AL+
Sbjct: 428 GFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGF 487
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFK-IIEDW 304
AKK+D+ + +++ + +E TF +IE +
Sbjct: 488 CKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGY 522
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
E +L H L KRG + +AL + D R G+ ++ + YN L+ C CK
Sbjct: 372 EVTYAILIHSL---CKRGMMDDALCMLDRMREKGVRMTVYPYNSLIN-CCCK-------- 419
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+L + GF +M+ + PN A+++ V K D A +L ++M G
Sbjct: 420 -----KDDLDMAMGF--LSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKG 472
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK---LSVDAKKVD 277
+ ++ + GFCK D+A + M ES + P E +A+++ L D +K
Sbjct: 473 VAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAF 532
Query: 278 KVYE 281
++Y+
Sbjct: 533 QLYD 536
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 18/187 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRG 174
++GD+ A+ L+ G+ + + + L+ C K E+S
Sbjct: 454 RKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASR--------------- 498
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+F +M ++PNE TF +V D AF L QM G+ P +Y + G
Sbjct: 499 --LFNKMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISG 556
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
C KA E A + + V + L+ALL ++ + Y + + + ++
Sbjct: 557 LCLTDGASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLD 616
Query: 295 ESTFKII 301
+F II
Sbjct: 617 LISFTII 623
>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g15630, mitochondrial; Flags: Precursor
gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 627
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG----- 170
+ GD +A L+D+ ++GI +Q Y L+YV C + D + +G
Sbjct: 409 QHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL---CRKNKTREADELFEKVVGKGMKP 465
Query: 171 -----------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
+ R F + ++M ++P++ T+ + R + E A +L+
Sbjct: 466 DLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELM 525
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+MK GI P SY + G+ K G+T A+ V M G P +ALLK
Sbjct: 526 GEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKN 585
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
++ + E+L +++ ++S+F + + ++DA
Sbjct: 586 QEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDA 622
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 19/193 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE-NDSNLGL- 171
CS GD+ A D+ G+ + + YN L++ + E++E RE + + L
Sbjct: 337 CSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLD 396
Query: 172 -----------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
K+ F + +M+TD + P + T+TS+ + K A +L +
Sbjct: 397 SVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFE 456
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
++ G+ P L + G C +GN D+A+ + M + P++ + L++
Sbjct: 457 KVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEG 516
Query: 275 KVDKVYEILHRLR 287
K ++ E++ ++
Sbjct: 517 KFEEARELMGEMK 529
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168
H L + S+ + A Y D I + + +N+++ V CK G G
Sbjct: 195 HILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVL-CKEGKLKKAKG------F 247
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
LG+ E+F + P T+ ++ + + E A ++ +MKS G P +++Y
Sbjct: 248 LGI---MEVF------GIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTY 298
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
P L C N +A EV M E G+VP+ + L++
Sbjct: 299 NPILSWMC---NEGRASEVLREMKEIGLVPDSVSYNILIR 335
>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
diamantinensis]
Length = 284
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 16/166 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 134 RLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGL-CK---ES-----KMDDAN------- 177
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ K ++A ++ K+M S + P L +Y ++G
Sbjct: 178 ELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 237
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
CK G+ +A ++ MG G+ P++ + L+ +D +E
Sbjct: 238 CKKGDLKQANDLIDEMGMKGLKPDKITYTTLIDGCCKEGNLDTAFE 283
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA + + G+ YN+L+ C+CG+ +K+ F + +M
Sbjct: 349 EADGIIKEMSEKGLVPDSVTYNILIN-GYCRCGN---------------VKKAFTLHDEM 392
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
I+ + P T+TS+ + + + A DL +++ GI P L + + G C GN
Sbjct: 393 ISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNM 452
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
D+A+ + M + VVP+E + L++ KV+ E++ +++
Sbjct: 453 DRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKS 499
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 78/170 (45%), Gaps = 19/170 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCS----CKCGSESSENGDRE--------- 164
G+V +A L+D+ S GI ++ Y L+YV S K + E R+
Sbjct: 380 GNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMF 439
Query: 165 ------NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
+ +N + R F + ++M KV P+E TF ++ + + E A +L+++MKS
Sbjct: 440 NALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKS 499
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
GI P SY + G+ K G+ A+ V M G P +AL++
Sbjct: 500 RGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQ 549
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 77/195 (39%), Gaps = 25/195 (12%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK- 172
CS RG V A ++D + G+ + Y + CK G +G E +GL+
Sbjct: 237 CS-RGRVEGARMIFDLMKCRGVKPDSYTYGSFIS-GMCKEGKLEEASGMLEKMKEIGLRP 294
Query: 173 -------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
F+ +M+ + + P +T+ + + A ++
Sbjct: 295 TAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGII 354
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD- 272
K+M G+ P +Y + G+C+ GN KA+ + M G+ P ++L+ +
Sbjct: 355 KEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKR 414
Query: 273 --AKKVDKVYEILHR 285
K+ D ++E + R
Sbjct: 415 GRMKQADDLFEKIVR 429
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 20/210 (9%)
Query: 98 ARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGS 155
AR SP V L D C ++GD +A RL+D+ I + Y +L+ +C S
Sbjct: 186 ARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245
Query: 156 ESSENGDRENDSNL------------------GLKRGFEIFQQMITDKVDPNEATFTSVA 197
E+ +S + +K+ E++Q+M+ D + PN TF +
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
++ A + M SFG+ P + Y + G+CK GN +A + + + + ++
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365
Query: 258 PEEPELSALLKLSVDAKKVDKVYEILHRLR 287
P+ S L+K ++++ +L ++
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMK 395
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K+G ++Y D + G + + Y L+ C R+ D
Sbjct: 165 LDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCC------------RQGD---- 208
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F +F +MI K+ P +T + R + A + + M++ G+ P L +Y
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNT 268
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK+ + KA E+ M G++P L+
Sbjct: 269 MMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILI 305
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EAL L+ + + I Y++L+ CG + E D
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI---KGLCGVDRMEEAD-------- 388
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ Q+M PN T+ ++ + + E A ++ QM GI P + ++
Sbjct: 389 -----GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G + A + M G++P+ +AL+
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+D K ++ A + D S G+ + YN L+ Y CK G+
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY---CKAGN------------- 348
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
L + ++ ++ P+ T++ + + + E A L+++MK G P +Y
Sbjct: 349 --LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTY 406
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+CK GN +KA EV + M E G+ P S L+ A K++
Sbjct: 407 NTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ E+ QM ++PN TF+++ E A L +M G+ P + +Y
Sbjct: 419 MEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTA 478
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRLRT 288
+ G K GNT +A+ + M E+G+ P LS L+ L D + D + L + T
Sbjct: 479 LIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGT 537
>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 418
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ QM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ +E R+
Sbjct: 287 CKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRM 337
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ +F ++ + D + F L M++ G+ P + +Y + G CK D A E+
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANEL 228
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
M ++G+VP + L+ +VD EI ++
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQM 267
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G V A+ +Y S ++ YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ ++ +M + P++ T+T++ + + D E AF+ K+M I
Sbjct: 292 ---------LKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+Y + G C+ G + A ++ M G+ PE
Sbjct: 343 RLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ S + GD L+ F
Sbjct: 288 KKGDLKQAQDLXDEMSMKGLKPDKITYTTLI--------DGSCKEGD--------LETAF 331
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + + +T++ + A ++++M S G+ P++ +Y + F
Sbjct: 332 EYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK G+ ++ M G VP
Sbjct: 392 CKKGDVWTGSKLLKEMQRDGYVP 414
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 18/174 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 172 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KIDDAN------- 215
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 216 ELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 275
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK G+ +A+ + M G+ P++ + L+ +D +E HR R +
Sbjct: 276 CKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFE--HRKRMI 327
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A L+ +M G+ P +Y +
Sbjct: 249 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 308
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + ++ +AL+ SVDA+K+
Sbjct: 309 GCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKM 357
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK +GD L F
Sbjct: 277 KKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGC-CK-------DGD--------LDTAF 320
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + ++ +T++ + A ++++M S G+ P R+Y + F
Sbjct: 321 EHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEF 380
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 381 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412
>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 418
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 80/180 (44%), Gaps = 26/180 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG----DRENDSNLGLKR 173
GD+ E RL ++G+ + Y+VL+ NG + +D+N
Sbjct: 185 GDLDEGFRLKSAMLASGVQPDVYTYSVLI-------------NGLCKESKMDDAN----- 226
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++
Sbjct: 227 --ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK G+ +A+ + M G+ P++ + L+ +D +E HR R + +
Sbjct: 285 GLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFE--HRKRMIQENI 342
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A L+ +M G+ P +Y +
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLID 319
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + +E +AL SVDA+K+
Sbjct: 320 GCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKM 368
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 288 KKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGC-CKEGD---------------LDSAF 331
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + +E +T++ + A ++++M S G+ P R+Y + F
Sbjct: 332 EHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 391
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK G+ K ++ M G VP
Sbjct: 392 CKKGDVWKGSKLLKEMQRDGHVP 414
>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 418
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E +L ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 RLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F++M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G ++A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 287 CKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 342
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+++QM++ + P+ T+ ++ K A DL+ +M G+ P +Y +
Sbjct: 260 AMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLID 319
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 320 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 368
>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
micrantha]
Length = 431
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES +G E
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ESKMDGANE----------- 233
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 234 -LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 348
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ +A + + G+ L + Y LL C CK G ++ +
Sbjct: 633 GDIGKAFEYFTKIKEGGLKLDVYIYETLLRAC-CKSGR---------------MQSALAV 676
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M T K+ N + + + D A DL+KQMK G+PP + +Y + CK
Sbjct: 677 TREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCK 736
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ +A +V M + G+ P + L+K
Sbjct: 737 AGDMQRAQKVIEEMADVGLKPNLKTYTTLIK 767
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 21/177 (11%)
Query: 52 ITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKL 111
T IK+ D+ L KS +S+ T MS ++K AR +L +
Sbjct: 642 FTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMS--TQKIARNTFVYNIL---I 696
Query: 112 DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL 171
D ++RGDV+EA L + +G+ + H Y + C CK G +
Sbjct: 697 DGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINAC-CKAGD---------------M 740
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+R ++ ++M + PN T+T++ + P+ A ++MK G+ P +Y
Sbjct: 741 QRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAY 797
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 96 KKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155
+K R + R ++ + GD+ AL + D R +G + YN L++ K
Sbjct: 541 QKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQV 600
Query: 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
E R + +M + PNE T+T + R A D AF+ +
Sbjct: 601 E----------------RAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTK 644
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
+K G+ + Y L CK G A V M +
Sbjct: 645 IKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIA 686
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 61/134 (45%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K+ +F+++ P+ ++ + L + A + K+M+S+GI ++Y
Sbjct: 426 KKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSML 485
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GF L + A+ + M +SG+ P+ + L++ +D+ IL +++
Sbjct: 486 ISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERM 545
Query: 292 QVSESTFKIIEDWF 305
Q S F+ I + F
Sbjct: 546 QPSNRAFRPIIEGF 559
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 57/137 (41%), Gaps = 5/137 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR I M P T+ ++ + K E A ++ +M GI P +Y
Sbjct: 565 MKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTI 624
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ G+ KA+E + E G+ + LL+ + ++ + + T
Sbjct: 625 IMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMST-- 682
Query: 291 RQVSESTFK---IIEDW 304
++++ +TF +I+ W
Sbjct: 683 QKIARNTFVYNILIDGW 699
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 90/211 (42%), Gaps = 21/211 (9%)
Query: 98 ARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156
+R SP+ V + L D K G EA++L+ D + G YN +L + K +
Sbjct: 212 SRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMD 271
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
+E E+F++M+ PN AT++ V + + A ++++M
Sbjct: 272 EAE----------------EMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM 315
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
G P + +Y L G CK DKA+E+ + M ++G P+ S +L KV
Sbjct: 316 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 375
Query: 277 DKVYEILHRL--RTLVRQVSESTFKIIEDWF 305
+ R+ R LV V TF I+ D
Sbjct: 376 HDARVLFDRMIERKLVPDV--VTFNILMDGL 404
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 24/171 (14%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP+G+ + L D +K+G V EA RLY++ S G+ S + YN LL CK
Sbjct: 40 SPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNA-FCK-------- 90
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV----ARLAVAKEDPEMAFDLVKQM 216
+K E+F+ M +P+ T++++ + E EM F +M
Sbjct: 91 -------ETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLF---HKM 140
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G +Y + G CK N ++AY++ M G VP+ + +L
Sbjct: 141 IERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTIL 191
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + + +L++ NGI+ YN+L+ + R +++N
Sbjct: 20 KQGKLRDGYKLFEQMLDNGISPDGIEYNILI---------DGYAKKGRVDEAN------- 63
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++++M++ ++P+ T+ S+ + + A +L K M G P + +Y + G
Sbjct: 64 RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123
Query: 236 CKLGNTDKAYEVDAH-MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
CK G +A E+ H M E G +AL+ + +++ Y++L + +
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMAS 177
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ F M + P+ + + + + A L K + + G P +Y L G
Sbjct: 205 QFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 264
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
+ N D+A E+ M SG P S +L AKKVD +++L + +
Sbjct: 265 ARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDV 324
Query: 296 STFKIIEDWF 305
T+ I+ D
Sbjct: 325 VTYNILLDGL 334
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 56/95 (58%)
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A +L+ +M++ G+ P + +Y L G+CK+G+TD A+E++ M + GVVP+ S+L++
Sbjct: 384 ARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIR 443
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
+ +++ E+ ++ L Q E T+ + D
Sbjct: 444 GLCEERRLGDACELFEKMLQLGLQPDEFTYTTLID 478
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 18/194 (9%)
Query: 113 MCSKRGDVFEALRLY-DDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL 171
+C+ RG EAL + DD R G + YN L+ C+ G +
Sbjct: 164 LCA-RGQREEALGVVGDDMRGAGCAPNVVTYNTLV-AAFCRAGEVDAAE----------- 210
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ M V P+ TF +V E A + +M G+ P SY
Sbjct: 211 ----RLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTL 266
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ G+CK G +A V A M + GVVP+ ++L+ A +++ ++ ++R
Sbjct: 267 VSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGL 326
Query: 292 QVSESTFKIIEDWF 305
+++E TF + D F
Sbjct: 327 RMNEFTFTALIDGF 340
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + +A +++D+ G+T YN L+ CK G L
Sbjct: 237 KAGRMEDARKMFDEMAREGLTPDGVSYNTLVSG-YCKAGC---------------LHEAL 280
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M V P+ TFTS+ + E A LV QM+ G+ ++ + GF
Sbjct: 281 AVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGF 340
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
C+ G D A M E + P + L+ ++D+ E++H +
Sbjct: 341 CRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEA 393
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
FE+ ++M+ V P+ T++S+ R + A +L ++M G+ P +Y +
Sbjct: 419 AFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLID 478
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G CK GN KA + M + GV+P+ S L+ + + + +L +L
Sbjct: 479 GHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531
>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
micromera]
Length = 431
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 26/178 (14%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG----DRENDSNLGL 171
+ GD+ E RL ++G+ + Y+VL+ NG + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMXASGVQPDVYTYSVLI-------------NGLCKEXKMDDAN--- 232
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y
Sbjct: 233 ----ELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXL 288
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
++G CK G+ +A ++ M G+ P++ + L+ +B +E HR R +
Sbjct: 289 IYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFE--HRXRMI 344
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ + K D + A DL+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVD 277
G CK GN B A+E M E + ++ +AL+ L + + VD
Sbjct: 326 GCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVD 370
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 59.3 bits (142), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 2/148 (1%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F++M+ + P+ TF ++ E A D++ M + G+PP + +Y + G C
Sbjct: 385 LFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLC 444
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G ++ E M SG VPE +L+ A + D +++ +L++
Sbjct: 445 KSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTV 504
Query: 297 TFKIIED--WFDSVDAAEIGVLNWDVSK 322
T+ I+ D W I VL V K
Sbjct: 505 TYNILVDGLWKSGKTEQAITVLEEMVGK 532
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 23/212 (10%)
Query: 99 RRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
R P+ V + L D K GD+ EA RL+ S G + Y+VL+ CK G
Sbjct: 110 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGL-CKVGR-- 166
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVD--PNEATFTSVARLAVAKEDPEMAFDLVKQ 215
+ E+ Q+M D PN T+ S + A +L++
Sbjct: 167 -------------IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 213
Query: 216 MK--SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
++ S + P ++ + G CK G TD+A D G G VP +AL+ A
Sbjct: 214 LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAG--GYVPNVVTYNALVNGLCKA 271
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
K+++ + ++ + T+ ++ D F
Sbjct: 272 DKMERAHAMIESMVDKGVTPDVITYSVLVDAF 303
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K V EAL L S G T + +N ++ + DR ++
Sbjct: 300 VDAFCKASRVDEALELLHGMASRGCTPNVVTFNSII---------DGLCKSDRSGEA--- 347
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
F+I Q+ + P++ TF + A + E A L ++M + + P + ++G
Sbjct: 348 ----FQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGA 403
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK G + A ++ MG GV P + L+ + ++++ E L +
Sbjct: 404 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEM 459
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 173 RGFEIFQ-QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
R EIF+ +M D V P T+ ++ + +L +++ G P + +Y
Sbjct: 63 RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTL 122
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ CK G+ ++A + M G VP S L+ ++D+ E++ +
Sbjct: 123 IDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEM 177
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 185 KVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK 243
+V P+ TF++ + L + E D M + G P + +Y + G CK ++
Sbjct: 220 RVSPDTVTFSTLIDGLCKCGQTDEACND---DMIAGGYVPNVVTYNALVNGLCKADKMER 276
Query: 244 AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
A+ + M + GV P+ S L+ A +VD+ E+LH + + + TF I D
Sbjct: 277 AHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIID 336
Query: 304 WFDSVD 309
D
Sbjct: 337 GLCKSD 342
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 2/129 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L G E+F++++ P+ T+ ++ D E A L M S G P + +Y
Sbjct: 97 LGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSV 156
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G CK+G D+A E+ M V+P ++ L + E++ LR
Sbjct: 157 LINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRD 216
Query: 289 LVRQVSEST 297
+VS T
Sbjct: 217 GSLRVSPDT 225
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 51/121 (42%)
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
MI PN T+ ++ + E A +++ M G+ P + +Y + FCK
Sbjct: 249 MIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASR 308
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
D+A E+ M G P ++++ + + + ++I ++ + + TF I
Sbjct: 309 VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNI 368
Query: 301 I 301
+
Sbjct: 369 L 369
>gi|440794290|gb|ELR15456.1| pentatricopeptide repeat domain/PPR repeatcontaining protein,
partial [Acanthamoeba castellanii str. Neff]
Length = 551
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 80/185 (43%), Gaps = 29/185 (15%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+++C KR D+ +ALR+ + R+ G+ + Y L+ +C +RE +
Sbjct: 142 VNVCCKRNDLTQALRVLAEMRNEGVKPNIFTYASLVNIC------------EREKN---- 185
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK+ ++ ++M + + PN +TS+ + K D LV MK F +L P
Sbjct: 186 LKKALDLLEEMKDENIQPNVYIYTSLINVCEKKRD------LVTAMKLFDDMTRLYRIRP 239
Query: 231 ALFGFCKLGNT-------DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
F F L N D+ EV A M + VVP ++L L K E+L
Sbjct: 240 NTFTFNSLLNVCVEKRDLDRGMEVLALMRQHQVVPNTSTFNSLASLCAKTGNAAKGLELL 299
Query: 284 HRLRT 288
++T
Sbjct: 300 ATMKT 304
Score = 39.7 bits (91), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF--GIPPKLRSYGPALFG 234
+ Q M +K+ P T+T++ + E A ++++QMK+ G+ P + Y +
Sbjct: 85 LMQHMRDEKIKPTVVTYTNLLKYCERVESWHKAAEVLEQMKAEAPGLKPDVVFYTAMVNV 144
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK + +A V A M GV P ++L+ + K + K ++L ++
Sbjct: 145 CCKRNDLTQALRVLAEMRNEGVKPNIFTYASLVNICEREKNLKKALDLLEEMK 197
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
RG EAL + D R G + YN L+ C+ G + R
Sbjct: 170 RGHRKEALSVLRDMRGAGCDPNAVTYNTLV-AAFCRAGE---------------VDRAER 213
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAK----EDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ M + PN TF SV + K ED FD +M G+ P SY +
Sbjct: 214 LVDMMREGGLKPNLVTFNSVVN-GICKAGRMEDARKVFD---EMVKEGLAPDGVSYNTLV 269
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G+CK+G + +A V A M G++P+ ++L+ + A +++ ++ +R Q
Sbjct: 270 GGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQ 329
Query: 293 VSESTFKIIEDWFDSVDAAEIGVLNWDVSKVRE 325
++E TF + D F + G L+ + VRE
Sbjct: 330 MNEITFTALIDGF-----CKKGFLDDALLAVRE 357
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 24/224 (10%)
Query: 102 SPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---- 155
+P+GV + L C K G EAL ++ + GI + L++V CK G+
Sbjct: 259 APDGVSYNTLVGGYC-KVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHV-MCKAGNLERA 316
Query: 156 -----ESSENGDRENDSNLG------LKRGFE-----IFQQMITDKVDPNEATFTSVARL 199
E E G + N+ K+GF ++M ++ P+ + ++
Sbjct: 317 VGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALING 376
Query: 200 AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ A +LV++M++ G+ P + +Y L +CK G+T A++++ M E+GV+P+
Sbjct: 377 YCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPD 436
Query: 260 EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
S+L+++ + K++ + + + +L Q E T+ + D
Sbjct: 437 AITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLID 480
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + EA L + + G+ Y+ +L S +NGD + F++
Sbjct: 381 GRMDEARELVREMEAKGVKPDVVTYSTIL--------SAYCKNGDTHS--------AFQL 424
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
QQM+ + V P+ T++S+ R+ ++ A L K M S G+ P +Y + G CK
Sbjct: 425 NQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCK 484
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
GN ++A + M ++GV+P+ S L+ + + + +L +L
Sbjct: 485 EGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKL 533
Score = 47.0 bits (110), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
+D++L R F F M++D V PN T+ + R + + A +++ M+ G P
Sbjct: 134 SDASLPSARRF--FDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPN 191
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+Y + FC+ G D+A + M E G+ P
Sbjct: 192 AVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKP 225
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 63/159 (39%), Gaps = 16/159 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD A +L NG+ Y+ L+ V E GD
Sbjct: 414 KNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLC-----EEKRLGD-----------AH 457
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F+ MI+ + P+E T+TS+ + + E A L +M G+ P + +Y + G
Sbjct: 458 VLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGL 517
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
K T +A + + VP + AL++ +A+
Sbjct: 518 SKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAE 556
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 24/181 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G EALRL + R NG YN L+ S LG
Sbjct: 86 VDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLI--------------------STLG 125
Query: 171 ----LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
L F +F +M P+ T+ S+ + A +L+++M+ G PP +
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+Y + G K G T KA+++ M G P+ +AL+ A +VD E+L +
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245
Query: 287 R 287
+
Sbjct: 246 K 246
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 19/190 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY----VCSCKCGSESSENGDREN------ 165
K G + EA L+ + R G YN L+Y V + E E +R
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVM 185
Query: 166 -----DSNLG----LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
+ LG + F++FQ+M P+ TFT++ + A +L+ +M
Sbjct: 186 TYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEM 245
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
K G+ P + +Y + GF K+G+ +AY + M +G P+ S L+ + A ++
Sbjct: 246 KERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQL 305
Query: 277 DKVYEILHRL 286
D+ ++L ++
Sbjct: 306 DEACQVLKKM 315
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 17/197 (8%)
Query: 97 KARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155
K R P+ + L D K G V +AL L D+ + G+ YN L+ +
Sbjct: 211 KRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALI--------A 262
Query: 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
+ GD L + + +M + P+ T++ + + + A ++K+
Sbjct: 263 GFGKVGD--------LVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKK 314
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M+ G PP +Y + G K G + A + M G P+ S L+ A +
Sbjct: 315 MEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAAR 374
Query: 276 VDKVYEILHRLRTLVRQ 292
V+ + + ++ Q
Sbjct: 375 VESACVLFEEMESVGIQ 391
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 98/239 (41%), Gaps = 29/239 (12%)
Query: 52 ITDIKQNRFSADLTTGLCTL-AFSKKSTVNESSAPNTGTMSNKSKKKARRES--PEGVLR 108
+ ++K+N D+ T C + K S ++E+ + KK +E P+ +
Sbjct: 277 LDEMKRNGCKPDVVTYSCLITGLIKASQLDEAC---------QVLKKMEKEGCPPDTITY 327
Query: 109 HKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS 167
+ L + K G + +A RL+D +S G Y+ L+ ES+
Sbjct: 328 NTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESA--------- 378
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
+F++M + + P+ T+ S+ + + A L +M+ G+ P + +
Sbjct: 379 -------CVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVIT 431
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y L + G +A ++ M ESG++P+ ALL K+VD +L L
Sbjct: 432 YNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKEL 490
>gi|147801213|emb|CAN73209.1| hypothetical protein VITISV_002838 [Vitis vinifera]
Length = 1024
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
+ PN T+T++ R K+D A L+ +M S G+ P +Y + G C+ DK
Sbjct: 375 LSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIK 434
Query: 246 EV-DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII--- 301
E+ + +G+ G +P+ L+ L+K K+++ + + ++ L Q +T+ ++
Sbjct: 435 EILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRS 494
Query: 302 ----------EDWFDSVDAAEI 313
E++FD + EI
Sbjct: 495 LCQRGDFRRAEEFFDELAEKEI 516
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 19/176 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDAR-SNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
L + KRG A +L+D+ + G+T + +N+L+ R N
Sbjct: 278 LSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILI----------------RGFCMNS 321
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM--KSFGIPPKLRS 227
+ GF F++M K DP+ T+ ++ ++A ++VK M KS + P + +
Sbjct: 322 MVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVT 381
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
Y + G+C + +A + A M G+ P + + L++ +A+K+DK+ EIL
Sbjct: 382 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEIL 437
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 22/209 (10%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS----- 155
E E V LD K G V EA L++D R + H+ LLY C+ G
Sbjct: 209 EPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFTSLLY-GWCREGKIMEAK 266
Query: 156 -------ESSENGDRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARLA 200
E+ D +NL ++ F++ +M PN A+FT + +
Sbjct: 267 HVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSF 326
Query: 201 VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
E + A + +M+ G + +Y + GFCK GNTDKAYE+ M + G P +
Sbjct: 327 CKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQ 386
Query: 261 PELSALLKLSVDAKKVDKVYEILHRLRTL 289
++ +++++ E++ +R +
Sbjct: 387 LSYLCIMMAHEKKEELEECMELIEEMRKI 415
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+R++ + + +G Y L+ CK G N D+ +EI M
Sbjct: 334 EAMRIFTEMQGSGCEADVVTYTTLI-SGFCKWG-----NTDK----------AYEILDDM 377
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
I DP++ ++ + KE+ E +L+++M+ G P L Y + CKLG+
Sbjct: 378 IQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDL 437
Query: 242 DKAYEVDAHMGESGVVP 258
+A + M G+ P
Sbjct: 438 KEAVRLWGEMQAGGLNP 454
>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 623
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG----- 170
+ GD +A L+D+ ++GI +Q Y L+YV C + D + +G
Sbjct: 410 QHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVL---CRRNKTREADELFEKVVGKGMKP 466
Query: 171 -----------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
+ R F + ++M +DP++ T+ + R + E A +L+
Sbjct: 467 DLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELM 526
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+MK GI P SY + G+ K G+T A+ V M G P +ALLK
Sbjct: 527 GEMKRRGIKPDHISYNTLISGYSKKGDTKHAFIVRDEMLSLGFNPTLLTYNALLK 581
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE-NDSNLGL- 171
CS GD+ A D+ G+ + + YN L++ + E++E RE + + L
Sbjct: 338 CSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLD 397
Query: 172 -----------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
K+ F + +M+TD + P + T+TS+ + + A +L +
Sbjct: 398 SVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPTQFTYTSLIYVLCRRNKTREADELFE 457
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
++ G+ P L + G C GN D+A+ + M + P++ + L++
Sbjct: 458 KVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRMNIDPDDVTYNCLMRGLCGEG 517
Query: 275 KVDKVYEILHRLR 287
K ++ E++ ++
Sbjct: 518 KFEEARELMGEMK 530
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 19/160 (11%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168
H L + S+ + A Y D I + + +N+++ V CK G G
Sbjct: 196 HILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVL-CKEGKLKKAKG------F 248
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
LG+ F I P T+ ++ + + E A ++ +MKS G P L++Y
Sbjct: 249 LGIMESFGI---------KPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTY 299
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
P L C N +A EV M G+VP+ + L++
Sbjct: 300 NPILSWMC---NEGRASEVLREMKGIGLVPDSVSYNILIR 336
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 58.9 bits (141), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N L F +F +M+ D DPN T++++ ++ E A D++++M GI P + +
Sbjct: 250 NHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYT 309
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAK 274
Y L C G + +A E+ M + G VP +AL+ LS D K
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK 357
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAK---EDPEMAFDLVKQMKSFGIPPKLRSYGP 230
F+IF +M PN T++S+ + ED EM ++L+ ++ +G P + +Y
Sbjct: 606 AFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEM-YNLLARLTHYGCEPNVDTYTT 664
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C G +A ++ M + G+ P E ALL KV+ I + + TL
Sbjct: 665 LVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLG 724
Query: 291 RQVSESTFKII 301
Q+ S +K +
Sbjct: 725 FQLHLSDYKAL 735
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 17/207 (8%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S+ G A+ LY ++G+ + YN L+ ++ G E
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALI--------NQLCVEGRFET--------A 396
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
F IF+ M++ P+ T+ + + D + A + +M G P + +Y ++G
Sbjct: 397 FTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYG 456
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
+CK GN + A + M +G+ P+ + L+ K++ + + + +
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516
Query: 295 ESTF-KIIEDWFDSVDAAEIGVLNWDV 320
T+ II+ +F+ + L W +
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKM 543
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G++ A+RL + + NG+ Y L+ S S G E+ ++L
Sbjct: 459 KQGNLNNAMRLLEIMKGNGLKPDAWTYTELI--------SGFSRGGKLEHATSL------ 504
Query: 176 EIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F M+ + PN T+T++ +AK D +A L +M G P ++Y +
Sbjct: 505 --FYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALA--LFWKMVESGNLPSSQTYNVMIS 560
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
GF K + +A M + G++P ++ + + ++I H +
Sbjct: 561 GFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME 614
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N L F +F +M+ D DPN T++++ ++ E A D++++M GI P + +
Sbjct: 250 NHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYT 309
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAK 274
Y L C G + +A E+ M + G VP +AL+ LS D K
Sbjct: 310 YTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGK 357
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAK---EDPEMAFDLVKQMKSFGIPPKLRSYGP 230
F+IF +M PN T++S+ + ED EM ++L+ ++ +G P + +Y
Sbjct: 606 AFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEM-YNLLARLTHYGCEPNVDTYTT 664
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C G +A ++ M + G+ P E ALL KV+ I + + TL
Sbjct: 665 LVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLG 724
Query: 291 RQVSESTFKII 301
Q+ S +K +
Sbjct: 725 FQLHLSDYKAL 735
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 83/207 (40%), Gaps = 17/207 (8%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S+ G A+ LY ++G+ + YN L+ ++ G E
Sbjct: 353 SRDGKFEIAIGLYHKMLADGLVPTTVTYNALI--------NQLCVEGRFET--------A 396
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
F IF+ M++ P+ T+ + + D + A + +M G P + +Y ++G
Sbjct: 397 FTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYG 456
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
+CK GN + A + M +G+ P+ + L+ K++ + + + +
Sbjct: 457 YCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPN 516
Query: 295 ESTF-KIIEDWFDSVDAAEIGVLNWDV 320
T+ II+ +F+ + L W +
Sbjct: 517 HVTYTAIIDGYFNLAKVDDALALFWKM 543
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G++ A+RL + + NG+ Y L+ S S G E+ ++L
Sbjct: 459 KQGNLNNAMRLLEIMKGNGLKPDAWTYTELI--------SGFSRGGKLEHATSL------ 504
Query: 176 EIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F M+ + PN T+T++ +AK D +A L +M G P ++Y +
Sbjct: 505 --FYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALA--LFWKMVESGNLPSSQTYNVMIS 560
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
GF K + +A M + G++P ++ + + ++I H +
Sbjct: 561 GFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEME 614
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 23/193 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V EAL L D+ + GIT + ++ S + NGD LK +
Sbjct: 543 KAGKVNEALDLVDEILNKGITPDTVSFATII--------SGFANNGD--------LKGAY 586
Query: 176 EIFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++F++M KV AT+ + K D M L +M + G P +Y + G
Sbjct: 587 QLFRRMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDG 646
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR------T 288
FC GNTD Y+ M E G +P ++ +V + +I+H +
Sbjct: 647 FCITGNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPE 706
Query: 289 LVRQVSESTFKII 301
+V +SE+ K++
Sbjct: 707 VVNSISEADKKVV 719
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 22/175 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRG 174
+ G + +AL++ ++ NG + YN+++ +C C S D N N + +G
Sbjct: 403 QEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVS------DANNLMNDAIAKG 456
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ P+ TF ++ + E ++ +M S G+ P + +Y L G
Sbjct: 457 YV-----------PDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNG 505
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV----DKVYEILHR 285
K + E M E G VP + + L + A KV D V EIL++
Sbjct: 506 LSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNK 560
>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 22/199 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS------------ESS 158
LD K G V EA L++D R T + H+ LLY C+ G E+
Sbjct: 92 LDALCKNGSVKEAASLFEDMRIR-FTPTLKHFTSLLYG-WCREGKLMEAKYVLVQIREAG 149
Query: 159 ENGDRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
D +NL + +++ ++M + +PN +FT++ + AK+ E A
Sbjct: 150 FEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAM 209
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+ +M+S G P +Y + GFCK G K YE+ +M + G +P ++
Sbjct: 210 RVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIPNPMTYLHIMAAH 269
Query: 271 VDAKKVDKVYEILHRLRTL 289
+++++ E++ +R +
Sbjct: 270 EKKEELEECIELMEEMRKI 288
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C+K+ + EA+R++ + +S G Y L+ CK G +
Sbjct: 199 LCAKK-KMEEAMRVFFEMQSCGCPADAVTYTTLI-SGFCKWGK---------------IS 241
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+G+E+ MI PN T+ + KE+ E +L+++M+ G P L Y +
Sbjct: 242 KGYELLDNMIQQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVI 301
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVP 258
CKLG + V M +G+ P
Sbjct: 302 RLACKLGEIKEGVRVWNEMEATGLSP 327
>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
alba]
Length = 413
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 171 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 214
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 215 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 274
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ ++A+ + M G+ P++ + L+ +D +E HR R + +
Sbjct: 275 CKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFE--HRKRMIQENI 330
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 276 KKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGC-CKEGD---------------LDAAF 319
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + P A ++++M S G+ P +Y + F
Sbjct: 320 EHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEF 379
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M +G VP + L+
Sbjct: 380 CKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLM 411
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D A L+ +M G+ P +Y +
Sbjct: 248 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLID 307
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVD 277
G CK G+ D A+E M + + ++ +A++ L + + VD
Sbjct: 308 GCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVD 352
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 58.9 bits (141), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 22/209 (10%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS----- 155
E E V LD K G V EA L++D R + H+ LLY C+ G
Sbjct: 232 EPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFTSLLY-GWCREGKIMEAK 289
Query: 156 -------ESSENGDRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARLA 200
E+ D +NL ++ F++ +M PN A+FT + +
Sbjct: 290 HVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSF 349
Query: 201 VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
E + A + +M+ G + +Y + GFCK GNTDKAYE+ M + G P +
Sbjct: 350 CKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEILDDMIQKGHDPSQ 409
Query: 261 PELSALLKLSVDAKKVDKVYEILHRLRTL 289
++ +++++ E++ +R +
Sbjct: 410 LSYLCIMMAHEKKEELEECMELIEEMRKI 438
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 16/137 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+R++ + + +G Y L+ CK G N D+ +EI M
Sbjct: 357 EAMRIFTEMQGSGCEADVVTYTTLI-SGFCKWG-----NTDK----------AYEILDDM 400
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
I DP++ ++ + KE+ E +L+++M+ G P L Y + CKLG+
Sbjct: 401 IQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDL 460
Query: 242 DKAYEVDAHMGESGVVP 258
+A + M G+ P
Sbjct: 461 KEAVRLWGEMQAGGLNP 477
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 88/196 (44%), Gaps = 19/196 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS--- 167
+D C +GD+ +A D+ + GI S YN+L++ + E +E+ +E
Sbjct: 329 IDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGV 388
Query: 168 -------NLGL---------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
N+ + K+ +F +M+ + P T+TS+ + + A +
Sbjct: 389 EPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEE 448
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
K+ G+ P + + + G C GN D+A+++ M + VVP+E + L++
Sbjct: 449 KFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYC 508
Query: 272 DAKKVDKVYEILHRLR 287
+KV++ ++L ++
Sbjct: 509 RERKVEEAKKLLDEMK 524
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N + R F++ ++M KV P+E TF ++ + + E A L+ +MK GI P S
Sbjct: 475 NGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHIS 534
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
Y + G+ K G+ A EV M G P +AL++ + D E+L ++
Sbjct: 535 YNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQ 594
Query: 288 TLVRQVSESTF 298
+ +ST+
Sbjct: 595 SKGITPDDSTY 605
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 95 KKKARRESPEGVLRHK--LDMCSKRGDVFEALR-LYDDARSNGITLSQHHYNVLLYVCSC 151
+ K R SP +L + ++ C++ G +E L L+ + R GI YN LL C+C
Sbjct: 203 RMKKERVSP-SILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLL--CAC 259
Query: 152 KCGSESSENGDRENDSNLGLKRGFE-IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
SN GL E +F+ M V P+ T+T + +
Sbjct: 260 ---------------SNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVS 304
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L+K+M S G P++ SY L + ++GN + A V M E+G VP S LL L
Sbjct: 305 ELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLY 364
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+ D+V E+ ++ + +T+ + D F
Sbjct: 365 GKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVF 399
>gi|357127701|ref|XP_003565517.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Brachypodium distachyon]
Length = 579
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 74/147 (50%), Gaps = 1/147 (0%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S+LG + R ++F +M+ ++P+ ++ +A+ V + P A +L++QM G+ P +
Sbjct: 319 SSLGHMARCAKVFDRMLEAGIEPDPQVYSILAKGYVRAQQPGKAEELLQQMGRLGVRPNV 378
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ + G+C + + D A V M +GV P L+ + K+ K ++L
Sbjct: 379 VTFTTVISGWCSVADMDNATRVYDKMRGAGVRPNLRTFETLIWGYSEQKQPWKAEKVLQM 438
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAE 312
++ + +ST+ ++ D + +V E
Sbjct: 439 MKDAGVRPKQSTYSLVADAWKAVGIVE 465
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 1/140 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ +QM V PN F ++ + + D A D++ M+ FGI P + +Y
Sbjct: 254 LEEALRCVRQMKDAGVGPNVIVFNTLLKGFLDANDAAAAADVLGLMEQFGIKPDIVTYSH 313
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L LG+ + +V M E+G+ P+ S L K V A++ K E+L ++ L
Sbjct: 314 QLNALSSLGHMARCAKVFDRMLEAGIEPDPQVYSILAKGYVRAQQPGKAEELLQQMGRLG 373
Query: 291 RQVSESTF-KIIEDWFDSVD 309
+ + TF +I W D
Sbjct: 374 VRPNVVTFTTVISGWCSVAD 393
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVL---------LYVCSC-KCGSESSENGDREN 165
+R + A L+DD +S+G + + + Y+VL LY+ + SE G + N
Sbjct: 186 ERNQIIYARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPN 245
Query: 166 DSNLG-----LKRGFEI-----FQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVK 214
+ G L R ++ F QM+ + +P N F +V + + + A ++
Sbjct: 246 AATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFD 305
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
MK G+ P SY + G CK G+ Y++ M +G+ P S+LL A
Sbjct: 306 AMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAG 365
Query: 275 KVDKVYEILHRL 286
KV+ +E+ RL
Sbjct: 366 KVELAFELFRRL 377
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +F+ M+ V PN T T + + + AF + +++ FGI P L Y
Sbjct: 437 LTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPNLCMYRV 496
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK+ +D + + A M + G VP+ S ++ V A K+ + + + H++
Sbjct: 497 IINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFHKM 552
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 21/192 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---------ESSENG---DR 163
+ G V EA+ ++D + G+ H Y++L+ CK G E + NG
Sbjct: 293 REGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGL-CKQGDVLTGYDLLVEMARNGIAPTL 351
Query: 164 ENDSNL--GLKRG------FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
+ S+L GL R FE+F+++ + ++ + + E+ DL
Sbjct: 352 VSYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWND 411
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M P +Y ++ FC+ N A V M +SGV P + L+ +
Sbjct: 412 MVHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERM 471
Query: 276 VDKVYEILHRLR 287
+D+ + LH++R
Sbjct: 472 IDEAFLFLHKVR 483
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNL 169
+D + GDV AL + + NGI L + ++ L VC CK G R D+
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSAL--VCGMCKEG--------RVIDAER 471
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L+ +M+ + P++ T+T + K D + F L+K+M+S G P + +Y
Sbjct: 472 ALR-------EMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYN 524
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L G CKLG A + M GVVP++ + LL+
Sbjct: 525 VLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E +Q+M++ + P+ + ++ D A ++V M G+ P +Y + GF
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGF 425
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL-KLSVDAKKVDKVYEILHRLRTLVRQVS 294
C+ G+ + A E+ M ++G+ + SAL+ + + + +D + LR ++
Sbjct: 426 CRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP-D 484
Query: 295 ESTFKIIEDWFDSVDAAEIG 314
+ T+ ++ D F A+ G
Sbjct: 485 DVTYTMMMDAFCKKGDAQTG 504
>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD A +++D+ R G + YN LL CK G +++
Sbjct: 234 GDSNNAQKVFDEMRERGCLIDVLAYNSLLEAL-CKGGKRDE---------------AYKM 277
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M ++ VDP+ T++ R + + D + ++++ K + P + +Y + CK
Sbjct: 278 FLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCK 337
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
N ++AY++ M E GV P+ +A+ D +V+ ++ R+
Sbjct: 338 DQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRM 386
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ K G EA +++ + SNG+ Y++ + SC+ END
Sbjct: 262 LEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIR-SSCQ-----------END---- 305
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + + ++ + PN T+ V + ++ E A+ ++ +M G+ P SY
Sbjct: 306 LHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWSYNA 365
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
C + A + M VP++ + +LKL V + D+ E+
Sbjct: 366 IQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEV 417
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 172 KRGFEIFQQMITDKV----DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
KR Q DKV +P+ T++ + R D A + +M+ G + +
Sbjct: 198 KRKHVAHAQQFFDKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLA 257
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
Y L CK G D+AY++ M +GV P+ S ++ S + VY +L R +
Sbjct: 258 YNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTK 317
>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 58.5 bits (140), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD A +++D+ R G + YN LL CK G +++
Sbjct: 234 GDSNNAQKVFDEMRERGCLIDVLAYNSLLEAL-CKGGKRDE---------------AYKM 277
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M ++ VDP+ T++ R + + D + ++++ K + P + +Y + CK
Sbjct: 278 FLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCK 337
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
N ++AY++ M E GV P+ +A+ D +V+ ++ R+
Sbjct: 338 DQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRM 386
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ K G EA +++ + SNG+ Y++ + SC+ END
Sbjct: 262 LEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIR-SSCQ-----------END---- 305
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + + ++ + PN T+ V + ++ E A+ ++ +M G+ P SY
Sbjct: 306 LHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPDTWSYNA 365
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
C + A + M VP++ + +LKL V + D+ E+
Sbjct: 366 IQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEV 417
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 172 KRGFEIFQQMITDKV----DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
KR Q DKV +P+ T++ + R D A + +M+ G + +
Sbjct: 198 KRKHVAHAQQFFDKVKSVFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLA 257
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
Y L CK G D+AY++ M +GV P+ S ++ S + VY +L R +
Sbjct: 258 YNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQENDLHTVYRVLERTK 317
>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 568
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 16/167 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G +A +L+D+ R G++ + YN L+ G E + N++N
Sbjct: 280 KDGRTKDAFKLFDEMRERGVSCNIVTYNTLI-------GGLCREM--KANEAN------- 323
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ QM +D ++PN T+ ++ A L + +KS G+ P L +Y + GF
Sbjct: 324 KVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
CK G+T A +V M E G+ P + + L+ ++K ++
Sbjct: 384 CKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQL 430
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 17/205 (8%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP V+ L D C KRG++ +A L+ + G+ ++ Y VL++ +N
Sbjct: 195 SPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLF--------KN 246
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
G + K+GFE++++M D V PN T+ V + AF L +M+ G
Sbjct: 247 GIK--------KQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERG 298
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ + +Y + G C+ ++A +V M G+ P + L+ K+ K
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Query: 281 EILHRLRTLVRQVSESTFKIIEDWF 305
+ L++ S T+ I+ F
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGF 383
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
KVD + +F V + + E +FDL+ +++ FG P + Y + G CK G +KA
Sbjct: 158 KVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKA 217
Query: 245 YEVDAHMGESGVVPEEPELSALL 267
++ MG+ G+V E + L+
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLI 240
Score = 38.9 bits (89), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 73/164 (44%), Gaps = 18/164 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++ ++ +A++L G+T H Y+VL++ K G S L
Sbjct: 415 IDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIK--------GQMNEASRL- 465
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM-AFDLVKQMKSFGIPPKLRSYG 229
F+ M+ K++PN+ + ++ L KE A L ++M+ +PP + SY
Sbjct: 466 -------FKLMVAKKLEPNKVIYNTMV-LGYCKEGSSYRALRLFREMEEKELPPNVASYR 517
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ CK + +A + M ++G+ P + L+ + + D+
Sbjct: 518 YMIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLISRAKNDS 561
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
+ PN T+T++ R K+D A L+ +M S G+ P +Y + G C+ DK
Sbjct: 304 LSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIK 363
Query: 246 EV-DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII--- 301
E+ + +G+ G +P+ L+ L+K K+++ + + ++ L Q +T+ ++
Sbjct: 364 EILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRS 423
Query: 302 ----------EDWFDSVDAAEI 313
E++FD + EI
Sbjct: 424 LCQRGDFRRAEEFFDELAEKEI 445
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 19/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDAR-SNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
L + KRG A +L+D+ + G+T + +N+L+ R N
Sbjct: 207 LSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILI----------------RGFCMNS 250
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM--KSFGIPPKLRS 227
+ GF F++M K DP+ T+ ++ ++A ++VK M KS + P + +
Sbjct: 251 MVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVT 310
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
Y + G+C + +A + A M G+ P + + L++ +A+K+DK+ EIL
Sbjct: 311 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILE 367
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL + +++G+ + Y+VL+ G D N
Sbjct: 183 RLGDLDEGFRLKNAMQASGVQPDVYTYSVLIN------GLCKESKMDYAN---------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRM 337
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+D+ G S + +N+L++ CK
Sbjct: 90 RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEDSLECGYPASLYFFNILMHR-FCK 148
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G +K +F + + P +F ++ + D + F L
Sbjct: 149 EGE---------------IKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + +Y + G CK D A E+ M ++G+VP + L+
Sbjct: 194 KNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 NGRVDLAMEIYKQM 267
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ S + GD L+ F
Sbjct: 288 KKGDLKQAQDLIDEMSMKGLKPDKVTYTTLI--------DGSCKEGD--------LETAF 331
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P++ +Y + F
Sbjct: 332 EYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 391
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK G+ ++ M G VP
Sbjct: 392 CKKGDVWTGSKLMKEMQRDGYVP 414
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G V A+ +Y S ++ YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ ++ +M + P++ T+T++ + + D E AF+ K+M I
Sbjct: 292 ---------LKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+Y + G C+ G + A ++ M G+ PE
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 14/142 (9%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
+ PN T+T++ R K+D A L+ +M S G+ P +Y + G C+ DK
Sbjct: 304 LSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIK 363
Query: 246 EV-DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII--- 301
E+ + +G+ G +P+ L+ L+K K+++ + + ++ L Q +T+ ++
Sbjct: 364 EILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRS 423
Query: 302 ----------EDWFDSVDAAEI 313
E++FD + EI
Sbjct: 424 LCQRGDFRRAEEFFDELAEKEI 445
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 19/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDAR-SNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
L + KRG A +L+D+ + G+T + +N+L+ R N
Sbjct: 207 LSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILI----------------RGFCMNS 250
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM--KSFGIPPKLRS 227
+ GF F++M K DP+ T+ ++ ++A ++VK M KS + P + +
Sbjct: 251 MVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVT 310
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
Y + G+C + +A + A M G+ P + + L++ +A+K+DK+ EIL
Sbjct: 311 YTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDKIKEILE 367
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E +L ++G+ + Y+VL+ G D N
Sbjct: 189 RLGDLDEGFKLKSAMHASGVXPDVYTYSVLIN------GLCKESKMDXAN---------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ ++A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 348
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D A DL+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 188 PNEATFTSVARLAVAKE-DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
P F ++ KE D +A + + +G+ P + SY + G+ +LG+ D+ ++
Sbjct: 139 PASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFK 198
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ + M SGV P+ S L+ K+D E+ +
Sbjct: 199 LKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEM 238
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL +++G+ + Y+VL+ CK ES + +D N
Sbjct: 187 KLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDXN------- 230
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 231 ELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGL 290
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ +E R+
Sbjct: 291 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRM 341
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++ CK
Sbjct: 94 RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMH-SFCK 152
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G ++ +F + + P+ +F ++ + D F L
Sbjct: 153 EGE---------------IRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRL 197
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
K M++ G+ P + +Y + G CK D E+ M + G+VP + L+
Sbjct: 198 KKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCK 257
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 258 NGRVDLAMEIYKQM 271
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ S + GD L+ F
Sbjct: 292 KKGDLKQAQDLIDEMSMKGLKPDKITYTTLI--------DGSCKEGD--------LETAF 335
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E +MI + + ++ +T++ + A ++++M S G+ P++ +Y + F
Sbjct: 336 EYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEF 395
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ ++ M G VP + L+
Sbjct: 396 CKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLM 427
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 22/215 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA RL D+ + + YN L+ NG + S+L +GF
Sbjct: 329 KDGKIDEAFRLKDEMENLKLLPDVVTYNTLI-------------NGCFDCSSSL---KGF 372
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M V PN T+ V + V + + A + +++M+ G P ++ + G+
Sbjct: 373 ELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGY 432
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT---LVRQ 292
CK G +A+ + M G+ L+ +L +K+D Y++L V +
Sbjct: 433 CKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDE 492
Query: 293 VSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
VS T +I +F + E L WD K +E I
Sbjct: 493 VSYGT--LIMGYFKDGKSVEAMKL-WDEMKEKEII 524
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 85/190 (44%), Gaps = 21/190 (11%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V+ + ++ D G+ ++ + +N+L+Y C EN E +G + F F
Sbjct: 193 VYLSKAIFSDVIKLGVKVNTNTFNILIYGCCI-------ENKLSEAIGLIGKMKDFSCF- 244
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
P+ ++ ++ + K A DL+ MK+ G+ P ++ + G+CKLG
Sbjct: 245 --------PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLG 296
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI---LHRLRTLVRQVSES 296
+A +V M ++ V+P+ + L+ K+D+ + + + L+ L V+ +
Sbjct: 297 WLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYN 356
Query: 297 TFKIIEDWFD 306
T +I FD
Sbjct: 357 T--LINGCFD 364
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA R+ D+ G+ ++ N +L+ CG ++ + S KRG+
Sbjct: 434 KAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL---CGERKLDDAYKLLSS--ASKRGY 488
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ +E ++ ++ A L +MK I P + +Y + G
Sbjct: 489 FV-----------DEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGL 537
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
C G TD++ + + ESG+VP+E + ++ +V+K ++ +++
Sbjct: 538 CHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKM 588
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 83/196 (42%), Gaps = 21/196 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG--SESSENGDRENDSN 168
LD+ K+G + EA L D ++NG+ +++ +N+L+ CK G E+++ D +N
Sbjct: 254 LDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILV-SGYCKLGWLKEAAQVIDLMAQNN 312
Query: 169 L------------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
+ + F + +M K+ P+ T+ ++ F
Sbjct: 313 VLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGF 372
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L+ +M+ G+ P +Y + + K G D A M ESG P+ + L+
Sbjct: 373 ELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGY 432
Query: 271 VDAKKVDKVYEILHRL 286
A ++ + + ++ +
Sbjct: 433 CKAGRLSEAFRMMDEM 448
>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
Length = 213
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C+ G + EA L D S G+T + YN L+Y CK G L R
Sbjct: 19 CAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGL-CKSGK---------------LSR 62
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F ++ + + PN T+ ++ + AF L ++M GI P + +Y ++
Sbjct: 63 AVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIY 122
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV---DAKKVDKVYEILH 284
G C G ++A ++ M E+ V P L+ + + +++ K+Y+ +H
Sbjct: 123 GLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMH 176
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 49/114 (42%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ T++S+ A + AF L M S G+ P + +Y ++G CK G +A +
Sbjct: 7 PDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNL 66
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+ G+ P + L+ K + +++ ++ Q + T+ I+
Sbjct: 67 FNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSIL 120
>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
filifolia]
Length = 431
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ EN + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLI-------NGLCKEN--KMDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 KLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A ++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 348
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374
Score = 42.4 bits (98), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGC-CKEGD---------------LDTAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P R+Y + F
Sbjct: 338 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g26680, mitochondrial; Flags: Precursor
gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 521
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ L+ ++F +M V PN T+ ++ + D EMAF + M GI + +Y
Sbjct: 322 MKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTY 381
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+FG CK T KA + + + +VP SAL+ K D+ +E+ ++
Sbjct: 382 NALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFEL---YKS 438
Query: 289 LVR---QVSESTFKIIEDWF 305
++R +E TF ++ F
Sbjct: 439 MIRSGCHPNEQTFNMLVSAF 458
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S++GD A R Y+D NGI YN L++ CK ++
Sbjct: 354 SQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGL-CKQAKT---------------RKA 397
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +++ + + PN +TF+++ +++ + F+L K M G P +++ +
Sbjct: 398 AQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSA 457
Query: 235 FCKLGNTDKAYEVDAHM 251
FC+ + D A +V M
Sbjct: 458 FCRNEDFDGASQVLREM 474
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK NG
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGL-CKESKMDDANG-------------- 227
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 228 -LFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ ++ +E HR R + +
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFE--HRKRMIQENI 342
>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
viburnoides]
Length = 431
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN-GXCK---ES-----KXDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN FT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A+ + M G+ P++ + L+ +D +E R+
Sbjct: 293 CKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRM 343
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGC-CKEGD---------------LDXAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + +T++ + A ++++M S G+ P R+Y + F
Sbjct: 338 EHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENGDREND 166
K G + E+L ++ + G+ + L++ +CK G ++ E G R N+
Sbjct: 270 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA-TCKAGNLEQAVALVAQMRERGLRMNE 328
Query: 167 SNLG------LKRGFE-----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
K+GF ++M + P+ + ++ ++A +L+++
Sbjct: 329 VTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIRE 388
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M++ + P + +Y + G+CK+GN D A++++ M + GV+P+ S+L++ + K+
Sbjct: 389 MEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKR 448
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIED 303
++ E+ + L Q E T+ + D
Sbjct: 449 LNDACELFENMLQLGVQPDEFTYTTLID 476
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 16/193 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C+ RG + EA+ + D R G + YN L+ C+ G E D G +
Sbjct: 162 LCA-RGRLEEAVGVVGDMRGAGCAPNAVTYNTLV-AAFCRAG---------ELD---GAE 207
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + ++ PN TF S+ E A + +M G+ P + SY L
Sbjct: 208 RVVSLMRE--EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 265
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G+CK+G ++ V + M + G+VP+ ++L+ + A +++ ++ ++R +
Sbjct: 266 SGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR 325
Query: 293 VSESTFKIIEDWF 305
++E TF + D F
Sbjct: 326 MNEVTFTALIDGF 338
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F++ Q+M+ V P+ T++S+ R ++ A +L + M G+ P +Y
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK GN +KA + M GV+P+ S L+ + + + + +L +L
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
+D++L R F M+ V PN T+ + R A+ E A +V M+ G P
Sbjct: 129 SDASLPSARRF--LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPN 186
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255
+Y + FC+ G D A V + M E G
Sbjct: 187 AVTYNTLVAAFCRAGELDGAERVVSLMREEG 217
>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
rugosa]
Length = 414
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 172 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLIN-GXCK---ES-----KXDDAN------- 215
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN FT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 216 ELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 275
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A+ + M G+ P++ + L+ +D +E R+
Sbjct: 276 CKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRM 326
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A L+ +M G+ P +Y +
Sbjct: 249 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLID 308
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + +E +AL+ SVDA+K+
Sbjct: 309 GCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKM 357
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 277 KKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGC-CKEGD---------------LDSAF 320
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + +E +T++ + A ++++M S G+ P R+Y + F
Sbjct: 321 EHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 380
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 381 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 412
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK NG
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CKESKMDGANG-------------- 233
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 234 -LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 348
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K +A+ L D+ R+ G YNVL+ + GD
Sbjct: 293 LDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLI--------NAMCNEGD-------- 336
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ I + + P+ T+T V + E + +L+ +M S P ++
Sbjct: 337 VDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNT 396
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ C+ G D+A EV HM E G V + S++L D +VD E+L RL++
Sbjct: 397 IVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKS 454
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 60/119 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++ + M+++ + P+ T+ S+A ++ + A ++++++ G+ P Y
Sbjct: 685 MEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYND 744
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L GFC+ TD A + AHM SG +P+E LL+ +D+ +L L +L
Sbjct: 745 VLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSL 803
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 17/189 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
MC++ GDV EAL + + S+G Y +L CGSE K
Sbjct: 331 MCNE-GDVDEALNILSNLPSHGCKPDAVTYTPVL---KSLCGSER-------------WK 373
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+ +M ++ P+E TF ++ + + A ++V M G + +Y L
Sbjct: 374 EVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSIL 433
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G C +G D A E+ + + G P+ + +LK ++ ++ E++ +
Sbjct: 434 DGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCP 493
Query: 293 VSESTFKII 301
E TF +
Sbjct: 494 PDEVTFNTV 502
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+R E+ +M+ P+E TF +V K + A +V+QM G P + +Y
Sbjct: 478 ERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCI 537
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G C D A E+ + + G P+ + LLK
Sbjct: 538 IDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLK 574
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 57/136 (41%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ ++ + P+ +T+V + + E E A +L+ +M PP ++ +
Sbjct: 445 AVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVA 504
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C+ G D+A V M E+G P+ + ++ + +D E+L L++ +
Sbjct: 505 SLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKP 564
Query: 294 SESTFKIIEDWFDSVD 309
TF + VD
Sbjct: 565 DIVTFNTLLKGLCGVD 580
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 55/128 (42%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F M+ P+ T++ + + A L+ +M++ G P + +Y +
Sbjct: 270 ALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLIN 329
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C G+ D+A + +++ G P+ + +LK +++ +V E+L + +
Sbjct: 330 AMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAP 389
Query: 294 SESTFKII 301
E TF I
Sbjct: 390 DEVTFNTI 397
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 34/223 (15%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA + D S+G + YN L++ C+ G +R
Sbjct: 337 KAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG-HCRAGQT---------------ERAR 380
Query: 176 EIFQQMITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
E+ M+ + PN T+T+ V+ L A PE A + QMKS G P L +Y + G
Sbjct: 381 ELLSDMVARGLAPNVVTYTALVSGLCKANRLPE-ACGVFAQMKSSGCAPNLFTYTALILG 439
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
FC G D ++ M +G+ P+ L + + + EIL R +R
Sbjct: 440 FCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS-- 497
Query: 295 ESTFKIIEDWFDSV------DAAEIGVLNWDVSKVREGIVRGG 331
E W D V E G + + VR+ +VRGG
Sbjct: 498 -------EAWGDEVYRFAVDGLLEAGKMEMALGFVRD-MVRGG 532
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 19/195 (9%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
L H L M + D E L+ D G S YNV++ SCK G
Sbjct: 51 LIHGLCMANSFDDARE---LFADMNRRGCPPSPVTYNVMIDA-SCKRGM----------- 95
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
L+ ++ ++MI D P+ T+ +V E A L +M+ G P R
Sbjct: 96 ----LEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRR 151
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
S+ + G C+ D+A +V M + P+ L+ A K+++ Y++ R+
Sbjct: 152 SHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRM 211
Query: 287 RTLVRQVSESTFKII 301
S T+ ++
Sbjct: 212 LDSGITPSAVTYNVV 226
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 21/196 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYN-VLLYVC-------SCKCGSESSENGD 162
+D K V EAL L+++ G T ++ +N ++L +C +C+ E E D
Sbjct: 122 MDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EAKD 180
Query: 163 RENDS-NLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
DS + G L +++FQ+M+ + P+ T+ V + A
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L K M+S G P ++ + CK G D+A+ + M + G VP+ S L+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300
Query: 271 VDAKKVDKVYEILHRL 286
+VD +L +
Sbjct: 301 CSIARVDDARHLLEDM 316
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M PN + ++ + + A + +M++ IPP SYG + G
Sbjct: 137 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLA 196
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G ++AY++ M +SG+ P + ++ A +D+ E+ +R+ + S
Sbjct: 197 KAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRF 256
Query: 297 TFKIIED 303
TF I+ D
Sbjct: 257 TFNILID 263
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 16/173 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K G + EA +L+ +GIT S YNV+++ C + +
Sbjct: 192 IDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHG---MCLAYT------------- 235
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F+ M + P+ TF + + + AF L+K+M G P + +Y
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYST 295
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G C + D A + M + P + L+ A ++ + E+L
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 57/116 (49%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR +F QM+ D V P+ ATF ++ ++ K+ E A + ++M G P +Y
Sbjct: 282 IKRARNVFNQMVKDGVLPSVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYNL 341
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +G +A E+ M + P + L++ DA +++K ++ ++
Sbjct: 342 VIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDAGEIEKGLDLFQKM 397
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ A +++ +G+ S +N L+ + C +S EN I
Sbjct: 280 GEIKRARNVFNQMVKDGVLPSVATFNALIQIL---CKKDSVENA-------------ILI 323
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M+ PN T+ V R + + A +L+++M+ P +++Y + FC
Sbjct: 324 FEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCD 383
Query: 238 LGNTDKAYEVDAHMGESGVVP 258
G +K ++ MG +P
Sbjct: 384 AGEIEKGLDLFQKMGNGDCLP 404
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKR 173
+ G++ EA R+ + G+ + Y VL+ Y CK G +
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY---CKVGK---------------MTE 443
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + +M+ +V PN T+T+++ + D A +L+ +M S G+ + +Y +
Sbjct: 444 AFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLIN 503
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK GN ++A M E+G+ P+ + ++ +K++D+ + +L + +
Sbjct: 504 GLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563
Query: 294 SESTFKIIEDWFDSVDAAEIG--VLNWDVSK 322
+ T+ ++ + F E G +L W + K
Sbjct: 564 TIVTYNVLMNGFCMSGRVEGGKRLLEWMLEK 594
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 17/209 (8%)
Query: 94 SKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
+K +R +P V L D K+GDV A L + S G+ L+ YN L+ CK
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL-CK 507
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G+ L++ M + P+ T+T++ ++ + A L
Sbjct: 508 AGN---------------LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
+++M GI P + +Y + GFC G + + M E + P ++L+K
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKII 301
K + EI + + +E+T+ I+
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G + + M+ + PN T+ S+ + +++ + ++ K M S + P +Y +
Sbjct: 584 GKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIK 643
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G CK N +A + M E G +AL++L KK + + ++R
Sbjct: 644 GHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+ EA +++D+ R G L YN LL CK G+ + +++
Sbjct: 231 GEAVEARKVFDEMRGRGCALDVLAYNSLLEAL-CKGGN---------------VDEAYKM 274
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+++ + V+P+ ++ R + F ++ +MK + + P + +Y + CK
Sbjct: 275 FREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCK 334
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G + AY++ M E GV P+ + +L + +V++ +++
Sbjct: 335 NGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLI 380
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 69/167 (41%), Gaps = 19/167 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYV-CSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
+A+R +D G+ S + LLYV C CK + + DR
Sbjct: 166 DAIRAFDRMAEFGLRPSVDDLDKLLYVLCKCKHVKCAQQFFDR----------------- 208
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
+ K + T++ + R + A + +M+ G + +Y L CK GN
Sbjct: 209 -VKHKFEAKAKTYSILVRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGN 267
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
D+AY++ +G GV P+ + ++ +A + V+ +L R++
Sbjct: 268 VDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMK 314
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGL-CK---ES-----KMDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ K ++A ++ K+M S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A ++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 348
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGC-CKEGD---------------LDTAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P +Y + F
Sbjct: 338 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K + M +G VP + L+
Sbjct: 398 CKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLM 429
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKR 173
+ G++ EA R+ + G+ + Y VL+ Y CK G +
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY---CKVGK---------------MTE 443
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + +M+ +V PN T+T+++ + D A +L+ +M S G+ + +Y +
Sbjct: 444 AFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLIN 503
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK GN ++A M E+G+ P+ + ++ +K++D+ + +L + +
Sbjct: 504 GLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563
Query: 294 SESTFKIIEDWFDSVDAAEIG--VLNWDVSK 322
+ T+ ++ + F E G +L W + K
Sbjct: 564 TIVTYNVLMNGFCMSGRVEGGKRLLEWMLEK 594
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 17/209 (8%)
Query: 94 SKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
+K +R +P V L D K+GDV A L + S G+ L+ YN L+ CK
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL-CK 507
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G+ L++ M + P+ T+T++ ++ + A L
Sbjct: 508 AGN---------------LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
+++M GI P + +Y + GFC G + + M E + P ++L+K
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKII 301
K + EI + + +E+T+ I+
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G + + M+ + PN T+ S+ + +++ + ++ K M S + P +Y +
Sbjct: 584 GKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIK 643
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G CK N +A + M E G +AL++L KK + + ++R
Sbjct: 644 GHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
D V A+RL++D + G + N ++Y K ++ +
Sbjct: 211 FDAYVNNNSVDSAMRLFEDMKERG----KVKPNTIMYTTLIKGYGQNKQ----------- 255
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + IF+ M D V PN T+ SV + A L+++M S GI P L ++
Sbjct: 256 LDKAMRIFRLMQQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITFST 315
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+C + DK++++ + M E G++P+ ++LL+
Sbjct: 316 IIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLE 353
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 23/219 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLS-----QHHYNVLLYVCSCKCGSESSENGDREN 165
+D K V EAL L S G T + + +N+L+ +CK G+
Sbjct: 258 VDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILI-AGACKAGN---------- 306
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
++ +F++M+ + P+ TF ++ E A D++ M + G+PP +
Sbjct: 307 -----FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNV 361
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+Y + G CK G ++A + M SG VP+ +L+ A + D +++
Sbjct: 362 VTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE 421
Query: 286 LRTLVRQVSESTFKIIED--WFDSVDAAEIGVLNWDVSK 322
L++ T+ I+ D W I VL V K
Sbjct: 422 LKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGK 460
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 21/212 (9%)
Query: 99 RRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
R P+ V + L D K GD+ EA RL+ D S G + Y+VL+ CK G
Sbjct: 66 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLING-LCKVGR-- 122
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVD--PNEATFTSVARLAVAKEDPEMAFDLVKQ 215
+ E+ Q+M D PN T+ S + A +L++
Sbjct: 123 -------------IDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS 169
Query: 216 MK--SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
++ S + P ++ + G CK G D+A V M G VP +AL+ A
Sbjct: 170 LRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKA 229
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
K+++ + ++ + T+ ++ D F
Sbjct: 230 DKMERAHAMIESMVDKGVTPDVITYSVLVDAF 261
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 173 RGFEIFQ-QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
R EIF+ +M D V P T+ ++ D +L +++ G P + +Y
Sbjct: 19 RALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTL 78
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ CK G+ ++A + M G VP S L+ ++D+ E++ +
Sbjct: 79 IDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEM 133
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
CKCG + +F MI PN T+ ++ + E A
Sbjct: 192 CKCGQ---------------IDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 236
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+++ M G+ P + +Y + FCK D+A E+ M G P
Sbjct: 237 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTP 284
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L G E+F++++ P+ T+ ++ D E A L M S G P + +Y
Sbjct: 53 LGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSV 112
Query: 231 ALFGFCKLGNTDKAYEVDAHM 251
+ G CK+G D+A E+ M
Sbjct: 113 LINGLCKVGRIDEARELIQEM 133
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K D+ +A L + ++ +T S Y+VL+ S C S L++
Sbjct: 428 KSHDMAKACELLAEMKARKLTPSPFTYSVLI---SGLCHSSD-------------LQKAN 471
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI + V PN + ++ + V + EMA +L+K M + G+ P L Y + G
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
C+ ++A + MGE G+ P A + L
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 27/220 (12%)
Query: 64 LTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEA 123
L G C SK++ + S P++G N+ A +D K G++ EA
Sbjct: 317 LVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTAL-----------IDGFIKEGNIEEA 365
Query: 124 LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183
LR+ D+ + G+ L+ YN ++ ++ G+ + + +F +M+
Sbjct: 366 LRIKDEMITRGLKLNVVTYNAMI--------GGIAKAGE--------MAKAMSLFNEMLM 409
Query: 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK 243
++P+ T+ + + D A +L+ +MK+ + P +Y + G C + K
Sbjct: 410 AGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQK 469
Query: 244 AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
A EV M +GV P L+K V + + E+L
Sbjct: 470 ANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELL 509
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 87/211 (41%), Gaps = 25/211 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK-----------------CGSESS 158
K G++ EA +L+D+ S GI+ + Y +L+ C + GS S+
Sbjct: 710 KSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSA 769
Query: 159 ENGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
N ++ G + E+F M+ K+ PN T+T + E E A L M+
Sbjct: 770 FNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDME 829
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ I P +Y L + ++GN K + M G+ + + V A
Sbjct: 830 TRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA------IAYGVMASAYC 883
Query: 278 KVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
K + L L+ L + + E K+ +D FD++
Sbjct: 884 KEGKSLEALKLLNKSLVEG-IKLEDDVFDAL 913
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 21/170 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-----------YVCSCKCGSESSE 159
+++ SK G++ A R + D S+GI + Y +L+ + + KC E
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622
Query: 160 NGDRENDS--------NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
D S N K +F + + V P+ + S+ + D E A
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQ 682
Query: 212 LVKQMKSFGIPPKLRSYGPAL--FGFCKLGNTDKAYEVDAHMGESGVVPE 259
L +M GI P + Y + +G+CK GN +A+++ M G+ P+
Sbjct: 683 LYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPD 732
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 74/176 (42%), Gaps = 21/176 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRG 174
K GD+ +A +LYD+ NGI + YN L+ CK G+ L
Sbjct: 673 KEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGN---------------LTEA 717
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV--KQMKSFGIPPKLRSYGPAL 232
F++F +MI+ + P+ + + + + E A L Q KS G L ++ +
Sbjct: 718 FKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG---SLSAFNSLI 774
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
FCK G +A E+ M + + P + L+ A+ +++ ++ + T
Sbjct: 775 DSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMET 830
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V EA L+DD +T + Y +L+ D + +
Sbjct: 774 IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILI---------------DAYGKAEM- 817
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++F M T + PN T+TS+ + L K M++ GI +YG
Sbjct: 818 MEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGV 877
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+CK G + +A ++ G+ E+ AL+ K++ V E+L +
Sbjct: 878 MASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEM 933
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
+ PN T+ + L + ++A K M S GI P Y + G C +GNT +A
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611
Query: 246 EVDAHMGESGVVPEEPELSALL-KLSVDAKKVDKVYEILHRLRT 288
M E G++P+ SA++ LS + K + + L L+T
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT 655
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ F+I + M+ P+ +T++ V E AF L ++MKS G+ P + +Y +
Sbjct: 438 KAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILI 497
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
FCK+G ++A M G P +ALL + K+V + +I HR+
Sbjct: 498 DSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRM 551
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ TD + PN T+ ++ A +L+ M S G P Y + GFCK
Sbjct: 599 FEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCK 658
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+G D A EV M + G +P ++L+ +++D ++L ++
Sbjct: 659 VGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQM 707
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 87/232 (37%), Gaps = 25/232 (10%)
Query: 64 LTTGLCTLAFSKKSTVNESSAPNTGTMSNKSK------KKARRESPEGVLRHKL-DMCSK 116
L GLC S+K+ E A GT N + +P V L D K
Sbjct: 566 LVDGLCKAGESQKAC--EVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCK 623
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
V +A L D SNG + Y+ L+ CK G L E
Sbjct: 624 AHKVVDAQELLDVMSSNGCEPNHIIYDALIDG-FCKVGK---------------LDNAQE 667
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M P T+TS+ ++A ++ QM P + +Y + G C
Sbjct: 668 VFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLC 727
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
++G KA ++ + M + G P ++L+ + KVD ++ ++ T
Sbjct: 728 RIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMIT 779
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N L + FE+F +M+ D +PN T++++ + A D++++M GI P + +
Sbjct: 245 NRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYT 304
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y + C +G D A + MG+ G P +A++ A K++ + H++
Sbjct: 305 YTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKM 363
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 23/221 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--------YVCSCKCGSESSENGD 162
+D K G + AL L++ NG + S YN ++ + + K ++ +E G
Sbjct: 519 IDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGL 578
Query: 163 REND-----------SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ N N F+IF +M PN T+TS+ + E D
Sbjct: 579 QPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSL----IYGLCQEGKVD 634
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
+++ G P + +Y + G C+ G +++A ++ +M E G+ P +LL
Sbjct: 635 AAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHC 694
Query: 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE 312
+ KVD EI + + Q +K++ V AE
Sbjct: 695 KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAE 735
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 48/117 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ +F +M+ D P T+ ++ + + A + MK P R+Y
Sbjct: 423 IEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCE 482
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GFCK G D A M + G+ P + +A++ K+D + R+
Sbjct: 483 LISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERME 539
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 49/110 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++ Q+ + V P+ TF ++ + K + A + ++ F + P +Y + G C
Sbjct: 184 VYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHC 243
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ DKA+EV M + G P S L+ + ++ + ++L +
Sbjct: 244 RNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEM 293
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK NG
Sbjct: 170 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CKESKMDGANG-------------- 214
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 215 -LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 273
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 274 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 329
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ A L D+ R G+ L+ YN ++ CK G+
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGI-CKAGN--------------- 518
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ ++ ++M +DP+ T+T+V D + A L+++M G+ P + ++
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNV 578
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFC LG + + M E G+VP+ + L+K ++ +I R+R
Sbjct: 579 LMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG 638
Query: 291 RQVSESTFKII-----------EDWFDSVDAAEIG 314
+T+ I+ E WF + E G
Sbjct: 639 VAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKG 673
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V E L+ + S G+ + Y L+ V CK G + F +
Sbjct: 412 GKVIEPQNLFHEMISRGLKPDEVTYTTLIDV-YCKAGE---------------MVNAFSL 455
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+M+ + PN T+ ++ + + A +L+ +M+ G+ + Y + G CK
Sbjct: 456 HNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICK 515
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
GN ++A ++ M +G+ P+ + ++ +DK +++L + Q + T
Sbjct: 516 AGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT 575
Query: 298 FKIIEDWFDSVDAAEIG--VLNWDVSKVREGIV 328
F ++ + F + E G +L W + K GIV
Sbjct: 576 FNVLMNGFCMLGMLEDGDRLLGWMLEK---GIV 605
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GD+ +A +L + G+ + +NVL+ + C E+GDR
Sbjct: 545 IDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM---NGFCMLGMLEDGDR------- 594
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ M+ + P+ T+ ++ + + + K+M++ G+ P +Y
Sbjct: 595 ------LLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK N +A+ + M E G VP +AL+K +K + E+ +R
Sbjct: 649 LIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMR 705
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 21/190 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-SESSENGDRE---------NDS 167
G++ +AL+L DD + G+ +++ YN ++ + CK G S +E RE N
Sbjct: 307 GELKKALKLMDDMQIKGLKPNRYTYNSIILLL-CKIGKSFEAEKVLREMMSQKIIPDNVV 365
Query: 168 NLGLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
L GF + F +M++ K+ P+ T+T++ + +L +M
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
S G+ P +Y + +CK G A+ + M + G+ P AL+ ++D
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485
Query: 278 KVYEILHRLR 287
E+L +R
Sbjct: 486 TANELLDEMR 495
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ +A ++ KQM S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRM 337
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 20/246 (8%)
Query: 60 FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE--SPEGVLRHKLDMCSKR 117
F + G+ FS + +N S + ++ +RE SP + + + R
Sbjct: 171 FDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACAR 230
Query: 118 GDV-FEALR-LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
GD+ +E L L+ + R G+ YN LL C+ + + +E
Sbjct: 231 GDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEM--------------- 275
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F+ MI + P T++ + E L+K+M+S G P + SY +
Sbjct: 276 -VFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAH 334
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
KLG+ +A +V M +G VP S LL L + D V E+ +++ +
Sbjct: 335 AKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDA 394
Query: 296 STFKII 301
+T+ I+
Sbjct: 395 TTYNIL 400
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 37/242 (15%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+K G + EA+ ++ ++ G + Y++LL + K G R +D
Sbjct: 335 AKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYG-KHG--------RYDDVR------ 379
Query: 175 FEIFQQMITDKVDPNEATFTSVARL----AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F QM +P+ T+ + R+ KE + DLV + I P + +Y
Sbjct: 380 -ELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDE----NIDPNMETYEG 434
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+F K G + A ++ HM G+VP S L++ A D E L T+
Sbjct: 435 LVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD---EALVAFNTMN 491
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWD----VSKVRE-GIVRGGGGWHG--QGWLGSG 343
S+ST I+ + + G L + +S++RE GI R + G +G+ SG
Sbjct: 492 EVGSKST---IDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSG 548
Query: 344 KW 345
++
Sbjct: 549 QY 550
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 100/246 (40%), Gaps = 20/246 (8%)
Query: 60 FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE--SPEGVLRHKLDMCSKR 117
F + G+ FS + +N S + ++ +RE SP + + + R
Sbjct: 171 FDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACAR 230
Query: 118 GDV-FEALR-LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
GD+ +E L L+ + R G+ YN LL C+ + + +E
Sbjct: 231 GDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEM--------------- 275
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F+ MI + P T++ + E L+K+M+S G P + SY +
Sbjct: 276 -VFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAH 334
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
KLG+ +A +V M +G VP S LL L + D V E+ +++ +
Sbjct: 335 AKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDA 394
Query: 296 STFKII 301
+T+ I+
Sbjct: 395 TTYNIL 400
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 102/242 (42%), Gaps = 37/242 (15%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+K G + EA+ ++ ++ G + Y++LL + K G R +D
Sbjct: 335 AKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYG-KHG--------RYDDVR------ 379
Query: 175 FEIFQQMITDKVDPNEATFTSVARL----AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F QM +P+ T+ + R+ KE + DLV + I P + +Y
Sbjct: 380 -ELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDE----NIDPNMETYEG 434
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+F K G + A ++ HM G+VP S L++ A D E L T+
Sbjct: 435 LVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYD---EALVAFNTMN 491
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWD----VSKVRE-GIVRGGGGWHG--QGWLGSG 343
S+ST I+ + + G L + +S++RE GI R + G +G+ SG
Sbjct: 492 EVGSKST---IDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSG 548
Query: 344 KW 345
++
Sbjct: 549 QY 550
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 18/157 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRG 174
K+G A+ + +D NG+ + YN+++ +C K R + L LKR
Sbjct: 271 KKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMK----------RSTHAYLLLKR- 319
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
M D + P+E T+ ++ + + +A + +M G+ P L +Y + G
Sbjct: 320 ------MRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDG 373
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
+C+ G D+A V M +GV P E SA+L SV
Sbjct: 374 YCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNGSV 410
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G + A++ D GI + ++VL+ SE S D
Sbjct: 651 SKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLI-----NAFSEKSRMSD-----------A 694
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++F M + P+ T++++ + K + + D+++ M G+ PK Y +
Sbjct: 695 LQLFNCMKWLYMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINA 754
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
C+ G+ + A+ + M G+VP E S++++
Sbjct: 755 KCRFGDINGAFRLKEEMTALGIVPAEVADSSIVR 788
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 27/215 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ A L D+ R G+ L+ YN ++ CK G+
Sbjct: 475 IDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGI-CKAGN--------------- 518
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ ++ ++M +DP+ T+T+V D + A L+++M G+ P + ++
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNV 578
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFC LG + + M E G+VP+ + L+K ++ +I R+R
Sbjct: 579 LMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQG 638
Query: 291 RQVSESTFKII-----------EDWFDSVDAAEIG 314
+T+ I+ E WF + E G
Sbjct: 639 VAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKG 673
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V E L+ + S G+ + Y L+ V CK G + F +
Sbjct: 412 GKVIEPQNLFHEMISRGLKPDEVTYTTLIDV-YCKAGE---------------MVNAFSL 455
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+M+ + PN T+ ++ + + A +L+ +M+ G+ + Y + G CK
Sbjct: 456 HNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICK 515
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
GN ++A ++ M +G+ P+ + ++ +DK +++L + Q + T
Sbjct: 516 AGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVT 575
Query: 298 FKIIEDWFDSVDAAEIG--VLNWDVSKVREGIV 328
F ++ + F + E G +L W + K GIV
Sbjct: 576 FNVLMNGFCMLGMLEDGDRLLGWMLEK---GIV 605
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GD+ +A +L + G+ + +NVL+ + C E+GDR
Sbjct: 545 IDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLM---NGFCMLGMLEDGDR------- 594
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ M+ + P+ T+ ++ + + + K+M++ G+ P +Y
Sbjct: 595 ------LLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNI 648
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK N +A+ + M E G VP +AL+K KK+ + E+ +R
Sbjct: 649 LIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMR 705
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 83/190 (43%), Gaps = 21/190 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-SESSENGDRE---------NDS 167
G++ +AL+L DD + G+ +++ YN ++ + CK G S +E RE N
Sbjct: 307 GELKKALKLMDDMQIKGLKPNRYTYNSIILLL-CKIGKSFEAEKVLREMMSQKIIPDNVV 365
Query: 168 NLGLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
L GF + F +M++ K+ P+ T+T++ + +L +M
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMI 425
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
S G+ P +Y + +CK G A+ + M + G+ P AL+ ++D
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485
Query: 278 KVYEILHRLR 287
E+L +R
Sbjct: 486 TANELLDEMR 495
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 16/154 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K D+ +A L + ++ +T S Y+VL+ S C S L++
Sbjct: 428 KSHDMAKACELLAEMKARKLTPSPFTYSVLI---SGLCHSSD-------------LQKAN 471
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI + V PN + ++ + V + EMA +L+K M + G+ P L Y + G
Sbjct: 472 EVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGL 531
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
C+ ++A + MGE G+ P A + L
Sbjct: 532 CRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINL 565
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 27/220 (12%)
Query: 64 LTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEA 123
L G C SK++ + S P++G N+ A +D K G++ EA
Sbjct: 317 LVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTAL-----------IDGFIKEGNIEEA 365
Query: 124 LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183
LR+ D+ + G+ L+ YN ++ ++ G+ + + +F +M+
Sbjct: 366 LRIKDEMITRGLKLNVVTYNAMI--------GGIAKAGE--------MAKAMSLFNEMLM 409
Query: 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK 243
++P+ T+ + + D A +L+ +MK+ + P +Y + G C + K
Sbjct: 410 AGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQK 469
Query: 244 AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
A EV M +GV P L+K V + + E+L
Sbjct: 470 ANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELL 509
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-----------YVCSCKCGSESSE 159
+++ SK G++ A R + D S+GI + Y +L+ + + KC E
Sbjct: 563 INLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGL 622
Query: 160 NGDRENDS--------NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
D S N K +F + + V P+ + S+ + D E A
Sbjct: 623 IPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQ 682
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
L +M GI P + Y + G CKLG KA E+ + E +VP+ S ++
Sbjct: 683 LYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 89/216 (41%), Gaps = 25/216 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK-----------------C 153
+D K G++ EA +L+D+ S GI+ + Y +L+ C +
Sbjct: 738 IDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV 797
Query: 154 GSESSENGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
GS S+ N ++ G + E+F M+ K+ PN T+T + E E A L
Sbjct: 798 GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQL 857
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ I P +Y L + ++GN K + M G+ + + V
Sbjct: 858 FLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDA------IAYGVM 911
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
A K + L L+ L + + E K+ +D FD++
Sbjct: 912 ASAYCKEGKSLEALKLLNKSLVEG-IKLEDDVFDAL 946
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V EA L+DD +T + Y +L+ D + +
Sbjct: 807 IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILI---------------DAYGKAEM- 850
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++F M T + PN T+TS+ + L K M++ GI +YG
Sbjct: 851 MEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGV 910
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+CK G + +A ++ G+ E+ AL+ K++ V E+L +
Sbjct: 911 MASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEM 966
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 16/145 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G EA+ ++ G+ YN L+ S + GD E S L
Sbjct: 637 SKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLI--------SGFCKEGDIEKASQL----- 683
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +M+ + ++PN + ++ + A +L +++ + P + +Y + G
Sbjct: 684 ---YDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDG 740
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPE 259
+CK GN +A+++ M G+ P+
Sbjct: 741 YCKSGNLTEAFKLFDEMISKGISPD 765
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
+ PN T+ + L + ++A K M S GI P Y + G C +GNT +A
Sbjct: 552 IKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEAL 611
Query: 246 EVDAHMGESGVVPEEPELSALL-KLSVDAKKVDKVYEILHRLRT 288
M E G++P+ SA++ LS + K + + L L+T
Sbjct: 612 STFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKT 655
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 84/178 (47%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL +NG+ + Y+VL+ CK ES + +D+N
Sbjct: 171 RLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 214
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ K+M S + P L +Y ++G
Sbjct: 215 ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 274
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D ++ HR R + +
Sbjct: 275 CKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFK--HRKRMIQENI 330
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 94/211 (44%), Gaps = 22/211 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKR 173
+ G++ EA R+ + G+ + Y VL+ Y CK G +
Sbjct: 402 RAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGY---CKVGK---------------MTE 443
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + +M+ +V PN T+T+++ + D A +L+ +M S G+ + +Y +
Sbjct: 444 AFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLIN 503
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK GN ++A M E+G+ P+ + ++ +K++D+ + +L + +
Sbjct: 504 GLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKP 563
Query: 294 SESTFKIIEDWFDSVDAAEIG--VLNWDVSK 322
+ T+ ++ + F E G +L W + K
Sbjct: 564 TIVTYNVLMNGFCMSGRVEGGKRLLEWMLEK 594
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 17/209 (8%)
Query: 94 SKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
+K +R +P V L D K+GDV A L + S G+ L+ YN L+ CK
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGL-CK 507
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G+ L++ M + P+ T+T++ ++ + A L
Sbjct: 508 AGN---------------LEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSL 552
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
+++M GI P + +Y + GFC G + + M E + P ++L+K
Sbjct: 553 LQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCI 612
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKII 301
K + EI + + +E+T+ I+
Sbjct: 613 EKNMKSTTEIYKGMLSQEVVPNENTYNIL 641
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 50/114 (43%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G + + M+ + PN T+ S+ + +++ + ++ K M S + P +Y +
Sbjct: 584 GKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIK 643
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G CK N +A + M E G +AL++L KK + + ++R
Sbjct: 644 GHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC--SCKCGSESSENGDRENDSNLGLK 172
S RG + + + + R G L+ + YN L+++ S CG
Sbjct: 168 SIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCG------------------ 209
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E++++M+++ + P+ T++++ K D EM L+K+M+ G+ P + ++ +
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G D+AYE+ M + G P+ + L+ +A +++ E+ +++
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKA 325
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FE++++MI+ + P+ T+ V + + A D + S P R+YGP + G
Sbjct: 843 FELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDG 902
Query: 235 FCKLGNTDKAYEVDAHMGESGVVP 258
K+G ++A + M + G P
Sbjct: 903 LAKVGRLEEAMRLFEEMSDYGCKP 926
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+ K D EA +D R GI + H YN L+ CG +
Sbjct: 374 VDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI------CGLLRAGR---------- 417
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++ M + V P T+ + A + ++MK+ GI P + +
Sbjct: 418 IEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNA 477
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+L+ ++G +A + + E+G+ P+ + ++K KV +V E ++ L ++
Sbjct: 478 SLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCY---SKVGQVDEAVNLLSEMI 534
Query: 291 RQVSESTFKIIEDWFDSVDAA 311
R E ++ DS+ A
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKA 555
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
V+ +D K G V EA +++D + ++ + YN LL
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLL------------------- 584
Query: 166 DSNLG----LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
S LG +++ E+F+ MI K PN +F ++ ++ E+A + +M
Sbjct: 585 -SGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDC 643
Query: 222 PPKLRSYGPALFGFCKLGNTDKAY 245
P + +Y ++G K + A+
Sbjct: 644 KPDVLTYNTVIYGLIKENKVNHAF 667
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 78/178 (43%), Gaps = 24/178 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + +AL+L S G+ + + YN+ + +S E G +
Sbjct: 414 RAGRIEDALKLLGTMESVGVQPTAYTYNIFI-----DYFGKSGETG-----------KAV 457
Query: 176 EIFQQMITDKVDPN----EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
E F++M + PN A+ S+A + +E M ++ G+ P +Y
Sbjct: 458 ETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTM----FNGLRENGLAPDSVTYNMM 513
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ + K+G D+A + + M +G P+ +++L+ A +VD+ +++ R++ +
Sbjct: 514 MKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDM 571
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E + QM D P+ TFT + + D + AF M+ GI P L +Y + G
Sbjct: 353 EFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGL 412
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
+ G + A ++ M GV P
Sbjct: 413 LRAGRIEDALKLLGTMESVGVQP 435
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K G + EA+RL+++ G + +N+L+ + + GD E L
Sbjct: 900 IDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI--------NGYGKIGDTETACQL- 950
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
F++M+ + + P+ ++T + + A ++KS G+ P +Y
Sbjct: 951 -------FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNR 1003
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL---LKLSVDAKKVDKVYEILH 284
+ G K ++A + M G+VP+ ++L L L+ ++ ++YE L
Sbjct: 1004 IINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ EA +L+ + G+ + L+ CK G +K F +
Sbjct: 400 GDMVEAGKLFHEMFCKGLEPDSVTFTELIN-GYCKAGH---------------MKDAFRV 443
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
MI PN T+T++ + D + A +L+ +M G+ P + +Y + G CK
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 503
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
GN ++A ++ +G+ + + L+ + ++DK EIL + Q + T
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563
Query: 298 FKIIEDWFDSVDAAEIG--VLNWDVSK 322
F ++ + F E G +LNW ++K
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ F +M + + P+ T+T++ D A L +M G+ P ++ + G+
Sbjct: 372 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ A+ V HM ++G P + L+ +D E+LH +
Sbjct: 432 CKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ G ++ M+ + PN TF S+ + + + + A + K M S G+ P ++Y
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK N +A+ + M G S L+K + KK + E+ ++R
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMR 693
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ +QM S + P L +Y ++G
Sbjct: 227 ELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A+++ M G+ P++ + L+ ++ +E R+
Sbjct: 287 CKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRM 337
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++ CK
Sbjct: 90 RLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHX-FCK 148
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G ++ +F + + P+ +F ++ + D + F L
Sbjct: 149 EGE---------------IRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + +Y + G CK D A E+ M ++G+VP + L+
Sbjct: 194 KSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 NGRVDLAMEIYRQM 267
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 20/176 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC--SCKCGSESSENGDRENDSNLGLK 172
S RG + + + + R G L+ + YN L+++ S CG
Sbjct: 168 SIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCG------------------ 209
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E++++M+++ + P+ T++++ K D EM L+K+M+ G+ P + ++ +
Sbjct: 210 EALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICI 269
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G D+AYE+ M + G P+ + L+ +A +++ E+ +++
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKA 325
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 83/201 (41%), Gaps = 19/201 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+ K D EA +D R GI + H YN L+ CG +
Sbjct: 374 VDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLI------CGLLRAGR---------- 417
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++ M + V P T+ + + A + ++MK+ GI P + +
Sbjct: 418 IEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNA 477
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+L+ ++G +A + + E+G+ P+ + ++K KV +V E ++ L ++
Sbjct: 478 SLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCY---SKVGQVDEAVNLLSEMI 534
Query: 291 RQVSESTFKIIEDWFDSVDAA 311
R E ++ DS+ A
Sbjct: 535 RNGCEPDVIVVNSLIDSLYKA 555
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FE++++MI+ + P+ T+ V + + A D + S P R+YGP + G
Sbjct: 843 FELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDG 902
Query: 235 FCKLGNTDKAYEVDAHMGESGVVP 258
K+G ++A + M + G P
Sbjct: 903 LAKVGRLEEAMRLFEEMSDYGCKP 926
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
V+ +D K G V EA +++D + ++ + YN LL
Sbjct: 544 VVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLL------------------- 584
Query: 166 DSNLG----LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
S LG +++ E+F+ MI K PN +F ++ ++ E+A + +M
Sbjct: 585 -SGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDC 643
Query: 222 PPKLRSYGPALFGFCKLGNTDKAY 245
P + +Y ++G K + A+
Sbjct: 644 KPDVLTYNTVIYGLIKENKVNHAF 667
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E + QM D P+ TFT + + D + AF M+ GI P L +Y + G
Sbjct: 353 EFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGL 412
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
+ G + A ++ M GV P
Sbjct: 413 LRAGRIEDALKLLDTMESVGVQP 435
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K G + EA+RL+++ G + +N+L+ + + GD E L
Sbjct: 900 IDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILI--------NGYGKIGDTETACQL- 950
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
F++M+ + + P+ ++T + + A ++KS G+ P +Y
Sbjct: 951 -------FKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNR 1003
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL---LKLSVDAKKVDKVYEILH 284
+ G K ++A + M G+VP+ ++L L L+ ++ ++YE L
Sbjct: 1004 IINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQ 1060
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 21/213 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + +A++ Y D R G+ +++ Y L+ +CK G+ S +G
Sbjct: 374 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA-NCKIGNLSDAFRLGNEMLQVG 432
Query: 171 --------------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
+K E+F +M T V PN A++ ++ V ++ + A
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L+ ++K GI P L YG ++G C L + A V M E G+ + L+
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
+ + +L ++ L +V+ TF ++ D
Sbjct: 553 FKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 585
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 58/233 (24%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL------------------------- 145
+D K GDV A L+++ + G+ YN +
Sbjct: 269 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 328
Query: 146 ---------LYVCSCKCGS---------ESSENGDRENDSNLG------LKRGFEIFQQM 181
L C CK G E NG + N + K G + QQ
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEG--MMQQA 386
Query: 182 ITDKVD-------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I VD PNE T+TS+ + AF L +M G+ + +Y + G
Sbjct: 387 IKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDG 446
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
C +A E+ M +GV+P +AL+ V AK +D+ E+L+ L+
Sbjct: 447 LCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 499
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 16/147 (10%)
Query: 142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
YN L+ C CK G L G E +++M + + PN +++++
Sbjct: 335 YNALIN-CFCKFGK---------------LPIGLEFYREMKGNGLKPNVVSYSTLVDAFC 378
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ + A M+ G+ P +Y + CK+GN A+ + M + GV
Sbjct: 379 KEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVV 438
Query: 262 ELSALLKLSVDAKKVDKVYEILHRLRT 288
+AL+ DA+++ + E+ ++ T
Sbjct: 439 TYTALIDGLCDAERMKEAEELFGKMDT 465
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ EA +L+ + G+ + L+ CK G +K F +
Sbjct: 843 GDMVEAGKLFHEMFCKGLEPDSVTFTELIN-GYCKAGH---------------MKDAFRV 886
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
MI PN T+T++ + D + A +L+ +M G+ P + +Y + G CK
Sbjct: 887 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 946
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
GN ++A ++ +G+ + + L+ + ++DK EIL + Q + T
Sbjct: 947 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 1006
Query: 298 FKIIEDWFDSVDAAEIG--VLNWDVSK 322
F ++ + F E G +LNW ++K
Sbjct: 1007 FNVLMNGFCLHGMLEDGEKLLNWMLAK 1033
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 25/194 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG----- 170
K G++ EA++L + + G+ Y L+ C S + LG
Sbjct: 946 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLM---DAYCKSGEMDKAQEILKEMLGKGLQP 1002
Query: 171 -----------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
L+ G ++ M+ + PN TF S+ + + + + A +
Sbjct: 1003 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIY 1062
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
K M S G+ P ++Y + G CK N +A+ + M G S L+K +
Sbjct: 1063 KDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKR 1122
Query: 274 KKVDKVYEILHRLR 287
KK + E+ ++R
Sbjct: 1123 KKFLEAREVFDQMR 1136
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + F +M + + P+ T+T++ D A L +M G+ P ++
Sbjct: 810 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G+CK G+ A+ V HM ++G P + L+ +D E+LH +
Sbjct: 870 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 925
>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
duartei]
Length = 412
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 26/182 (14%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG----DRENDSNLGL 171
+ GD+ E L ++G+ + Y+VL+ NG + +D+N
Sbjct: 170 RXGDLDEGFXLKSXMLASGVQPDVYTYSVLI-------------NGLCKESKMDDAN--- 213
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y
Sbjct: 214 ----ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 269
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
++G CK G+ +A+ + M G+ P++ + L+ +D +E HR R +
Sbjct: 270 IYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFE--HRKRMIQE 327
Query: 292 QV 293
+
Sbjct: 328 NI 329
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A L+ +M G+ P +Y +
Sbjct: 247 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIN 306
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + +E +AL+ SVDA+K+
Sbjct: 307 GCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKM 355
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 275 KKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGC-CKEGD---------------LDSAF 318
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + +E +T++ + A ++++M S G+ P R+Y + F
Sbjct: 319 EHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEF 378
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ ++ M G VP + L+
Sbjct: 379 CKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLM 410
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K + +AL+ Y D R G+ ++H Y L+ CK G+ S + S +G
Sbjct: 245 VDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDA-YCKIGNLSDAFRLADEMSQVG 303
Query: 171 --------------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
+K E+F +M+T V PN A++T++ V ++ + A
Sbjct: 304 VEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRAL 363
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
+L+ +MK GI P L YG ++ C L + A V M E G+
Sbjct: 364 ELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGI 409
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 77/179 (43%), Gaps = 18/179 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + + + +++ +S YN L+ C CK G
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLIN-CFCKFGK--------------- 218
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYG 229
L +G E F++M + PN +++++ A KED + A M+ G+ P +Y
Sbjct: 219 LPKGLEFFREMKQSGLKPNVVSYSTLVD-AFCKEDMMQQALKFYVDMRRLGLVPNEHTYT 277
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ +CK+GN A+ + M + GV +AL+ D +++ + E+ ++ T
Sbjct: 278 SLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVT 336
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 20/183 (10%)
Query: 125 RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184
R + D G + YN+++ C CK GD E S L F++M
Sbjct: 119 RFFKDMIGAGSKPTVFTYNIMI-DCMCK-------EGDIEAASGL--------FEEMKFR 162
Query: 185 KVDPNEATFTSV--ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
+ P+ T+ S+ V + D + F ++MKS P + +Y + FCK G
Sbjct: 163 GLIPDTVTYNSMIDGYGKVGRLDDTVYF--FEEMKSMSCEPDVITYNTLINCFCKFGKLP 220
Query: 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE 302
K E M +SG+ P S L+ + + + +R L +E T+ +
Sbjct: 221 KGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLV 280
Query: 303 DWF 305
D +
Sbjct: 281 DAY 283
>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 966
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 1/152 (0%)
Query: 135 ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT 194
+ L++ Y +L V SC ++ N R ++ F+I ++M+ P+ +T+T
Sbjct: 398 LDLAEKVYEEML-VASCVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYT 456
Query: 195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254
V + + AF L ++MK G+ P + +Y + FCK G ++A M +
Sbjct: 457 KVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSA 516
Query: 255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G P +ALL + +K++ + +I HR+
Sbjct: 517 GCSPNVVTYTALLHAYLKSKQLYQANDIFHRM 548
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ TD + PN T+ ++ + A DL+ M + G P Y + GFCK
Sbjct: 596 FEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCK 655
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+G D A EV M + G +P ++L+ ++D ++L ++
Sbjct: 656 VGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQM 704
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M P+ T+TS+ ++A ++ QM P + +Y + G
Sbjct: 664 EVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGL 723
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G T+KA + + M + G P +AL+ A KVD E+ +++T +
Sbjct: 724 CKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNY 783
Query: 296 STFKII 301
T++I+
Sbjct: 784 VTYRIL 789
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ QM+ D +PN T+T++ + E A +L+ M+ G P + +Y
Sbjct: 694 LDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTA 753
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G K G D E+ M G P
Sbjct: 754 LIDGLGKAGKVDAGLELFMQMKTKGCAP 781
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 10/159 (6%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ + M+ +V+P+ TF SV D + A+ L+ M + G+ P + +Y L
Sbjct: 414 AMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLE 473
Query: 234 GFCKLGNTDKAYEVDAHM--------GESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
GF + G + AYE+ M + +VPE+ SAL++ A+++DK ++
Sbjct: 474 GFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQA-FSALIRGLCKAREIDKAMAVVEE 532
Query: 286 LRTL-VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKV 323
LR+ E I++ + E G L +SKV
Sbjct: 533 LRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKV 571
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + ++F++M + PN T+T++ A + A L+ +M + PP SY
Sbjct: 235 LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNA 294
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
L G+C+LG ++A ++ M +P+ + L++ +A ++++ +L ++T
Sbjct: 295 LLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKT 352
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 173 RGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGP 230
+ +E+ ++M K V P+ T+++V + + + A +++++M + GI P + +Y
Sbjct: 59 KAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTS 118
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G C+ G D+A E+ M GV P++ SAL+ +A+KVD+ ++ + T
Sbjct: 119 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILT 176
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E Q+MI V PN T++S+ + A +++K M + + P + ++ +
Sbjct: 381 EFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGAL 440
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
C+LG+ D+A+++ M G+ P + LL+ +++ YE+ +R
Sbjct: 441 CRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMR 492
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 81/203 (39%), Gaps = 20/203 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VC-----------------SCKCGSES 157
K GD+ +AL L+ S G + Y L++ +C +C
Sbjct: 231 KAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTV 290
Query: 158 SENGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
S N + LG ++ ++F++M T P+ T+T + R E A L++ M
Sbjct: 291 SYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENM 350
Query: 217 KSF-GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
K+ GI P + +Y + G+ + +A E M V P S+L+ A +
Sbjct: 351 KTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR 410
Query: 276 VDKVYEILHRLRTLVRQVSESTF 298
VD E+L + + S TF
Sbjct: 411 VDHAMEVLKNMVNKRVEPSVGTF 433
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 50/118 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ ++ M K PN T++S+ D + A DL ++M S G P + +Y
Sbjct: 200 LEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTT 259
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G C D A + M + P+ +ALL ++++ ++ + T
Sbjct: 260 LIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMAT 317
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F+I ++M+ P+ +T+T V + E +F L ++MK G+ P + +Y
Sbjct: 433 FEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTI 492
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK G ++A M G P +ALL + +K++ + ++I HR+
Sbjct: 493 LIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRM 548
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ +M+ D +PN T+T++ + E A +L+ M+ G P + +Y
Sbjct: 694 LDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTA 753
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G K G D + ++ M G P L+ A +D+ + +L ++
Sbjct: 754 LIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMK 810
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ F +FQ+M V+P+ T+T + E A +M+S G P + +Y
Sbjct: 468 VEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTA 527
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L + K +A+++ M ++ P SAL+ A ++ K E+ +L
Sbjct: 528 LLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKL 583
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ T + PN T+ ++ + A +L+ M + G P Y + GFCK
Sbjct: 596 FEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCK 655
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+G D A EV M + G +P ++L+ ++D ++L +
Sbjct: 656 IGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEM 704
>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hermannioides]
Length = 417
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ E RL ++G+ + Y+VL+ CK ES + +D+N E+
Sbjct: 177 GDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN-------EL 220
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M+ + PN TFT++ ++A ++ K+M S + P L +Y ++G CK
Sbjct: 221 FDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 280
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G+ +A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 281 KGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 334
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI+++M++ + P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 252 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 311
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 312 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 360
>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
barbata]
Length = 429
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 187 RLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 230
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 231 ELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 290
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ ++ + L+ +D +E HR R + +
Sbjct: 291 CKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFE--HRKRMIQENI 346
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ +M G+ +Y +
Sbjct: 264 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLID 323
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 324 GCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 372
>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 20/210 (9%)
Query: 98 ARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGS 155
AR SP V L D C ++GD +A RL+D+ I + Y +L+ +C S
Sbjct: 186 ARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRIS 245
Query: 156 ESSENGDRENDSNL------------------GLKRGFEIFQQMITDKVDPNEATFTSVA 197
E+ +S + +K+ E++ +M+ D + PN TF +
Sbjct: 246 EAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILI 305
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
++ A + M SFG+ P + Y + G+CK GN +A + + + + ++
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365
Query: 258 PEEPELSALLKLSVDAKKVDKVYEILHRLR 287
P+ S L+K ++++ +L ++
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMK 395
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K+G ++Y D + G + + Y L+ C R+ D
Sbjct: 165 LDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCC------------RQGD---- 208
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F +F +MI K+ P +T + R + A + + M++ G+ P L +Y
Sbjct: 209 FLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNT 268
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK+ + KA E+ M G++P L+
Sbjct: 269 MMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILI 305
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EAL L+ + + I Y++L+ CG + E D
Sbjct: 340 IDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILI---KGLCGVDRMEEAD-------- 388
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ Q+M PN T+ ++ + + E A ++ QM GI P + ++
Sbjct: 389 -----GLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFST 443
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G + A + M G++P+ +AL+
Sbjct: 444 LIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALI 480
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 20/169 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+D K ++ A + D S G+ + YN L+ Y CK G+
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY---CKAGN------------- 348
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
L + ++ ++ P+ T++ + + + E A L+++MK G P +Y
Sbjct: 349 --LSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTY 406
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+CK GN +KA EV + M E G+ P S L+ A K++
Sbjct: 407 NTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKME 455
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ E+ QM ++PN TF+++ E A L +M G+ P + +Y
Sbjct: 419 MEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTA 478
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRLRT 288
+ G K GNT +A+ + M E+G+ P LS L+ L D + D + L + T
Sbjct: 479 LIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGT 537
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 185 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 228
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ K+M S + P L +Y ++G
Sbjct: 229 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGL 288
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+ + M G+ P++ + L+ +D +E HR R + +
Sbjct: 289 CKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 344
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI+++M++ + P+ T+ ++ K D + A L+ +M G+ P +Y +
Sbjct: 262 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLID 321
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 322 GCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKM 370
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 290 KKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGC-CKEGD---------------LDTAF 333
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P R+Y + F
Sbjct: 334 EHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEF 393
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 394 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 425
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNL 169
+D + GDV AL + + NGI L + ++ L +C CK G R D+
Sbjct: 422 IDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSAL--ICGMCKEG--------RVIDAER 471
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L+ +M+ + P++ T+T + K D + F L+K+M+S G P + +Y
Sbjct: 472 ALR-------EMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYN 524
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L G CKLG A + M GVVP++ + LL+
Sbjct: 525 VLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLE 563
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E +Q+M++ + P+ + ++ D A ++V M G+ P +Y + GF
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGF 425
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR---Q 292
C+ G+ D A E+ M ++G+ + SAL+ K +V + LR ++R +
Sbjct: 426 CRGGDVDTALEIRKEMDQNGIELDRVGFSALI---CGMCKEGRVIDAERALREMLRAGMK 482
Query: 293 VSESTFKIIEDWFDSVDAAEIG 314
+ T+ ++ D F A+ G
Sbjct: 483 PDDVTYTMMMDAFCKKGDAQTG 504
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
D + FD ++ + P + S+ + G+CK+GN D + + HM +S P+ S
Sbjct: 258 DAQKVFD---EITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYS 314
Query: 265 ALLKLSVDAKKVDKVYEILHRL 286
AL+ K+D + + + +
Sbjct: 315 ALINALCKENKMDGAHRLFYEM 336
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENGDREND 166
K G + E+L ++ + G+ + L++ +CK G ++ E G R N+
Sbjct: 270 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA-TCKAGNLEQAVALVAQMRERGLRMNE 328
Query: 167 SNLG------LKRGFE-----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
K+GF ++M + P+ + ++ ++A +L+++
Sbjct: 329 VTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIRE 388
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M++ + P + +Y + G+CK+GN D A++++ M + GV+P+ S+L++ + K+
Sbjct: 389 MEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKR 448
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIED 303
++ E+ + L Q E T+ + D
Sbjct: 449 LNDACELFENMLQLGVQPDEFTYTTLID 476
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 16/193 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C+ RG + EA+ + D R G + YN L+ C+ G E D G +
Sbjct: 162 LCA-RGRLEEAVGVVGDMRGAGCAPNAVTYNTLV-AAFCRAG---------ELD---GAE 207
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + ++ PN TF S+ E A + +M G+ P + SY L
Sbjct: 208 RVVSLMRE--EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 265
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G+CK+G ++ V + M + G+VP+ ++L+ + A +++ ++ ++R +
Sbjct: 266 SGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR 325
Query: 293 VSESTFKIIEDWF 305
++E TF + D F
Sbjct: 326 MNEVTFTALIDGF 338
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F++ Q+M+ V P+ T++S+ R ++ A +L + M G+ P +Y
Sbjct: 414 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 473
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK GN +KA + M GV+P+ S L+ + + + + +L +L
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
+D++L R F M+ V PN T+ + R A+ E A +V M+ G P
Sbjct: 129 SDASLPSARRF--LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPN 186
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255
+Y + FC+ G D A V + M E G
Sbjct: 187 AVTYNTLVAAFCRAGELDGAERVVSLMREEG 217
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL +GI + Y+VL+ CK ES + ND+N
Sbjct: 183 RLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGL-CK---ES-----KMNDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +MI + + PN TFT++ ++A + K+M G P L +Y ++G
Sbjct: 227 ELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ ++ R+
Sbjct: 287 CKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRM 337
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 20/197 (10%)
Query: 111 LDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN-----GDRE 164
+D C K G F+ + ++++ NG+ + YN LL VCS E++ N DR
Sbjct: 264 IDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRG 323
Query: 165 NDSNL--------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
D ++ + +EI +M K+ PN T++++A E A
Sbjct: 324 IDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDAL 383
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L +MK GI SY L + KLG + A +V MG SGV + +ALL
Sbjct: 384 NLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGY 443
Query: 271 VDAKKVDKVYEILHRLR 287
K ++V + ++
Sbjct: 444 GKQGKFNEVTRVFKEMK 460
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G EA+++++ + +G+ + YN ++ C K G E KR
Sbjct: 234 KSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACG-KGGVE--------------FKRVV 278
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSFGIPPKLRSYGPALF 233
EIF++M+ + V P+ T+ S+ LAV E A +L +M GI + +Y L
Sbjct: 279 EIFEEMLRNGVQPDRITYNSL--LAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLD 336
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK G D AYE+ M ++P S + A +++ + + ++ L
Sbjct: 337 AVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFL 392
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + G VFEAL ++D+ + GI Q+ YN L+ DR D+
Sbjct: 467 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI---------SGFLKADRFGDA--- 514
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F+ M PN T + A + MKS GI P + +
Sbjct: 515 ----LELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNA 570
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
LFG K G A V + GV P+ + ++K A K D+ +I + +
Sbjct: 571 VLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 626
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
MC++ GDV EAL + D S+G Y +L CGSE K
Sbjct: 242 MCNE-GDVDEALNILSDLPSHGCKPDAVTYTPVL---KSLCGSER-------------WK 284
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+F +M ++K P+E TF ++ + + A +V M G P + +Y L
Sbjct: 285 EVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSIL 344
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G C +G D A E+ + + G P+ + +LK
Sbjct: 345 DGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLK 380
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K +A+ L D+ R+ G YNVL+ + GD
Sbjct: 204 LDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLI--------NAMCNEGD-------- 247
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ I + + P+ T+T V + E + +L +M S P ++
Sbjct: 248 VDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNT 307
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ C+ G D+A +V HM E G +P+ S++L D +VD E+L RL++
Sbjct: 308 IVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKS 365
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 60/119 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++ + M+++ + P+ T+ S+A ++ + A ++ +++ G+ P Y
Sbjct: 596 MEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYND 655
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L GFC+ TD A + AHM SG +P+E LL+ +D+ ++L L +L
Sbjct: 656 ILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSL 714
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 61/136 (44%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ ++ + P+ +T+V + + E E A +L+ +M PP ++ +
Sbjct: 356 AVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIA 415
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C+ G D+A +V M E+G P+ ++++ + + +D E+L L++ +
Sbjct: 416 SLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKP 475
Query: 294 SESTFKIIEDWFDSVD 309
TF + SVD
Sbjct: 476 DIVTFNTLLKGLCSVD 491
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ EA +L+ + G+ + L+ CK G +K F +
Sbjct: 823 GDMVEAGKLFHEMLCRGLEPDIITFTELMN-GYCKAGH---------------IKDAFRV 866
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
MI PN T+T++ + D + A +L+ +M G+ P + +Y + G CK
Sbjct: 867 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 926
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
GN ++A ++ +G+ + + L+ + ++DK EIL + Q + T
Sbjct: 927 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVT 986
Query: 298 FKIIEDWFDSVDAAEIG--VLNWDVSK 322
F ++ + F E G +LNW ++K
Sbjct: 987 FNVLMNGFCLHGMLEDGEKLLNWMLAK 1013
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 58/131 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + F +M + + P+ T+T++ D A L +M G+ P + ++
Sbjct: 790 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTE 849
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK G+ A+ V HM ++G P + L+ +D E+LH + +
Sbjct: 850 LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909
Query: 291 RQVSESTFKII 301
Q + T+ I
Sbjct: 910 LQPNIFTYNSI 920
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 71/194 (36%), Gaps = 25/194 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG----- 170
K G++ EA++L + + G+ Y L+ C S + LG
Sbjct: 926 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLM---DAYCKSGEMDKAQEILTEMLGKGLQP 982
Query: 171 -----------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
L+ G ++ M+ + PN TF + + + + + A +
Sbjct: 983 TIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIY 1042
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
K M S G+ P ++Y + G C N +A+ + M G S L+K
Sbjct: 1043 KDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKR 1102
Query: 274 KKVDKVYEILHRLR 287
KK + EI ++R
Sbjct: 1103 KKFVEAREIFDQMR 1116
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 20/197 (10%)
Query: 111 LDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN-----GDRE 164
+D C K G F+ + ++++ NG+ + YN LL VCS E++ N DR
Sbjct: 264 IDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMIDRG 323
Query: 165 NDSNL--------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
D ++ + +EI +M K+ PN T++++A E A
Sbjct: 324 IDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDAL 383
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L +MK GI SY L + KLG + A +V MG SGV + +ALL
Sbjct: 384 NLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGY 443
Query: 271 VDAKKVDKVYEILHRLR 287
K ++V + ++
Sbjct: 444 GKQGKFNEVTRVFKEMK 460
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G EA+++++ + +G+ + YN ++ C K G E KR
Sbjct: 234 KSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACG-KGGVE--------------FKRVV 278
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSFGIPPKLRSYGPALF 233
EIF++M+ + V P+ T+ S+ LAV E A +L +M GI + +Y L
Sbjct: 279 EIFEEMLRNGVQPDRITYNSL--LAVCSRGGLWEAARNLFNEMIDRGIDQDVFTYNTLLD 336
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK G D AYE+ M ++P S + A +++ + + ++ L
Sbjct: 337 AVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFL 392
>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
Length = 736
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ F++ ++M+ P+ +T++ V E AF L ++MK G+ P + +Y +
Sbjct: 206 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 265
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
FCK G ++A + M G P +AL+ + AK+V + +I HR+
Sbjct: 266 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 319
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V +A L+ + + G+T + Y +L+ CK G +++ +F+
Sbjct: 239 VEKAFLLFQEMKMVGVTPDVYTYTILIDS-FCKAGL---------------IEQAQWLFE 282
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M + P T+T++ + + A D+ +M G P +YG + G CK G
Sbjct: 283 EMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 342
Query: 240 NTDKAYEVDAHM-GES---------------GVVPEEPELSALLKLSVDAKKVDKVYEIL 283
N KA+EV A + G S + P AL+ A KVD +E+L
Sbjct: 343 NISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL 402
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ QM+ D PN T+T++ + E A L+ M+ G P + +Y
Sbjct: 465 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 524
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G K G D + ++ M G P L+ A +DK +L ++
Sbjct: 525 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 581
>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
Length = 801
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ F++ ++M+ P+ +T++ V E AF L ++MK G+ P + +Y +
Sbjct: 271 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
FCK G ++A + M G P +AL+ + AK+V + +I HR+
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V +A L+ + + G+T + Y +L+ CK G +++ +F+
Sbjct: 304 VEKAFLLFQEMKMVGVTPDVYTYTILIDS-FCKAGL---------------IEQAQWLFE 347
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M + P T+T++ + + A D+ +M G P +YG + G CK G
Sbjct: 348 EMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 407
Query: 240 NTDKAYEVDAHM-GES---------------GVVPEEPELSALLKLSVDAKKVDKVYEIL 283
N KA+EV A + G S + P AL+ A KVD +E+L
Sbjct: 408 NISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL 467
Score = 42.4 bits (98), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ QM+ D PN T+T++ + E A L+ M+ G P + +Y
Sbjct: 530 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 589
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G K G D + ++ M G P L+ A +DK +L ++
Sbjct: 590 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 89/223 (39%), Gaps = 34/223 (15%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA + D S+G + YN L++ C+ G +R
Sbjct: 554 KAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG-HCRAGQT---------------ERAR 597
Query: 176 EIFQQMITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
E+ M+ + PN T+T+ V+ L A PE A + QMKS G P L +Y + G
Sbjct: 598 ELLSDMVARGLAPNVVTYTALVSGLCKANRLPE-ACGVFAQMKSSGCAPNLFTYTALILG 656
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
FC G D ++ M +G+ P+ L + + + EIL R +R
Sbjct: 657 FCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS-- 714
Query: 295 ESTFKIIEDWFDSV------DAAEIGVLNWDVSKVREGIVRGG 331
E W D V E G + + VR+ +VRGG
Sbjct: 715 -------EAWGDEVYRFAVDGLLEAGKMEMALGFVRD-MVRGG 749
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 28/189 (14%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
L H L M + D E L+ D G S YNV++ SCK G
Sbjct: 364 LIHGLCMANSFDDARE---LFADMNRRGCPPSPVTYNVMIDA-SCKRGM----------- 408
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
L+ ++ ++MI D P+ T+ +V E A L +M+ G P R
Sbjct: 409 ----LEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRR 464
Query: 227 SYGPALFGFCKL---------GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
S+ + G C+ G D+A+ + M + G VP+ S L+ +VD
Sbjct: 465 SHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVD 524
Query: 278 KVYEILHRL 286
+L +
Sbjct: 525 DARHLLEDM 533
>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
Length = 769
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ F++ ++M+ P+ +T++ V E AF L ++MK G+ P + +Y +
Sbjct: 440 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 499
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
FCK G ++A + M G P +AL+ + AK+V + +I HR+
Sbjct: 500 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 553
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V +A L+ + + G+T + Y +L+ CK G +++ +F+
Sbjct: 473 VEKAFLLFQEMKMVGVTPDVYTYTILIDS-FCKAGL---------------IEQAQWLFE 516
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M + P T+T++ + + A D+ +M G P +YG + G CK G
Sbjct: 517 EMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 576
Query: 240 NTDKAYEVDAHM-GESG---------------VVPEEPELSALLKLSVDAKKVDKVYEIL 283
N KA+EV A + G S + P AL+ A KVD +E+L
Sbjct: 577 NISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL 636
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F QM P+ T+TS+ ++A ++ QM P + +Y + G
Sbjct: 669 EVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGL 728
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C++G ++KA ++ + M E G P +AL+
Sbjct: 729 CRIGESEKALKLLSLMEEKGCSPNVVTYTALI 760
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI PN TF ++ K E A +L+KQM G P L SY + G
Sbjct: 448 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 507
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR-TLVR 291
K GNTD+A E+ M + G+ P S++ +++KV ++ ++ T VR
Sbjct: 508 GKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVR 564
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G V +A+ L NG + Y+ ++ G + N D
Sbjct: 474 KKGLVEQAIELLKQMLVNGCSPDLISYSTVID------GLGKAGNTDE----------AL 517
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ M+ + PN ++S+A + + + ++ + Y +
Sbjct: 518 ELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSL 577
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G TD+A E A+M SG VP E + L++ V + EIL L
Sbjct: 578 CKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTEL 628
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 40/76 (52%)
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
DL+++M + G PP + ++ + C+ G ++ +EV A M E G P+ + ++
Sbjct: 238 DLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGV 297
Query: 271 VDAKKVDKVYEILHRL 286
++++ IL+R+
Sbjct: 298 CKEERLEVARGILNRM 313
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 51/116 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+R E+ QM P+ + ++ +E E+A ++ +M S+G+ P + Y
Sbjct: 268 FERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNT 327
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C ++A + A M + ++ + L+ VD+V E+L ++
Sbjct: 328 LLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQM 383
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 171 LKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+K F++F++M++ D + P+ T+ + P+ A ++++ MKS G P + +Y
Sbjct: 285 VKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYS 344
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G CK+G + A V A + SG+ P+ ++L+ K D+ E+L ++
Sbjct: 345 ALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKEN 404
Query: 290 VRQVSESTFKII 301
Q TF ++
Sbjct: 405 GCQADSVTFNVL 416
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 171 LKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK FE+F++M++ D++ P+ T+ + + + A ++++ MK+ G P + +Y
Sbjct: 325 LKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYS 384
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G CK G A V A M SG+ P+ ++L+ ++D+ E+L ++
Sbjct: 385 ALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKEN 444
Query: 290 VRQVSESTFKII 301
Q TF +I
Sbjct: 445 DCQADTVTFNVI 456
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 174 GFEIFQQMITDKVD-PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPA 231
FE+ ++M K PN T++++ + AF+L ++M S I P +Y
Sbjct: 292 AFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVL 351
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ GFC+ G D+A V M +G P SAL+ A K+ +L +++
Sbjct: 352 INGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKS 408
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENGDREND 166
K G + E+L ++ + G+ + L++ +CK G ++ E G R N+
Sbjct: 128 KVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA-TCKAGNLEQAVALVAQMRERGLRMNE 186
Query: 167 SNLG------LKRGFE-----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
K+GF ++M + P+ + ++ ++A +L+++
Sbjct: 187 VTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIRE 246
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M++ + P + +Y + G+CK+GN D A++++ M + GV+P+ S+L++ + K+
Sbjct: 247 MEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKR 306
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIED 303
++ E+ + L Q E T+ + D
Sbjct: 307 LNDACELFENMLQLGVQPDEFTYTTLID 334
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 16/193 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C+ RG + EA+ + D R G + YN L+ C+ G E D G +
Sbjct: 20 LCA-RGRLEEAVGVVGDMRGAGCAPNAVTYNTLV-AAFCRAG---------ELD---GAE 65
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + ++ PN TF S+ E A + +M G+ P + SY L
Sbjct: 66 RVVSLMRE--EGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLL 123
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G+CK+G ++ V + M + G+VP+ ++L+ + A +++ ++ ++R +
Sbjct: 124 SGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLR 183
Query: 293 VSESTFKIIEDWF 305
++E TF + D F
Sbjct: 184 MNEVTFTALIDGF 196
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F++ Q+M+ V P+ T++S+ R ++ A +L + M G+ P +Y
Sbjct: 272 LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTT 331
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK GN +KA + M GV+P+ S L+ + + + + +L +L
Sbjct: 332 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 387
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
FQQM D P+ T+ S+ + + A LV+QM+ GI P + +Y + GFC
Sbjct: 211 FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 270
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G ++A+ + M E GV P E L+ + DK Y +L
Sbjct: 271 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERDKAYRML 316
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 4/153 (2%)
Query: 153 CGSESSEN---GDRENDSNLGLKR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
CG E SE E+ LGL R E+F QM + P+ A + ++ +V +
Sbjct: 147 CGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALIAASVRAGAVDT 206
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A+ +QM + G P +Y + G C+ G D+A + M G+ P + L+
Sbjct: 207 AYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVD 266
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+A +V++ + +L +++ SE+T++ +
Sbjct: 267 GFCNAGRVEEAFRMLDKMKEKGVAPSEATYRTL 299
>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
Length = 609
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 10/161 (6%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ + ++M+ +V+P+ TF SV D + A+ L+ M + G+ P + +Y
Sbjct: 448 EEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTL 507
Query: 232 LFGFCKLGNTDKAYEVDAHM--------GESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
L GF + G + AYE+ M + +VPE+ SAL++ A+++DK ++
Sbjct: 508 LEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQA-FSALIRGLCKAREIDKAMAVV 566
Query: 284 HRLRTL-VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKV 323
LR+ E I++ + E G L +SKV
Sbjct: 567 EELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKV 607
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 58/118 (49%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + ++F++M + PN T+T++ A + A L+ +M + P SY
Sbjct: 240 LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNA 299
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
L G+C+LG ++A ++ M +P+ + L++ +A ++++ +L ++T
Sbjct: 300 LLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKT 357
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 173 RGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGP 230
+ +E+ ++M K V P+ T+++V + + + A +++++M + G+ P + +Y
Sbjct: 27 KAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTS 86
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G C+ G D+A E+ M GV P++ SAL+ +A+KVD+ ++ + T
Sbjct: 87 VVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILT 144
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ T+T V + E A L+++M + + P + ++ + C+LG+ D+A+++
Sbjct: 429 PDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKL 488
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDS 307
M G+ P + LL+ +++ YE+ +R ++ S + + E F +
Sbjct: 489 LVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSA 548
Query: 308 V 308
+
Sbjct: 549 L 549
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 171 LKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+ R EI ++M+T D + P+ T+TSV + A ++V++MK G+ P ++
Sbjct: 61 MDRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFS 120
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G+C D+A ++ + S + SAL+ +++ + YE+ +
Sbjct: 121 ALITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEM 177
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 174 GFEIFQQMITDKV---DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+E+FQ+M + P+ T+T++ + E A ++ M+ P + +Y
Sbjct: 170 AYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSS 229
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
L G CK G+ D+A ++ M G VP + L+ A KVD
Sbjct: 230 LLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVD 276
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 17/193 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
MC R ++ A+ +D R G+ ++ Y L+ D + L L
Sbjct: 160 MCKAR-NLNRAMEFFDQMRIRGLRPNERTYTTLI---------------DGFSRQGL-LN 202
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ I +M P+ T+ + E E A +V++M G+ P + SY +
Sbjct: 203 EAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTII 262
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
GFC+ G D+A+++ M E GV P+ S+L++ + +++ + ++ + +
Sbjct: 263 SGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLP 322
Query: 293 VSESTFKIIEDWF 305
E T+ + + +
Sbjct: 323 PDEFTYTTLINAY 335
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ + L + + NG + YN L+ CK G + F +
Sbjct: 24 GELQKGLGCFGEMERNGCLPNVVTYNTLIDA-YCKMGR---------------IDEAFGL 67
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+ M + + PN ++ + + + A++++++M G P +Y L G+CK
Sbjct: 68 LKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCK 127
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
GN +A + A M +GV P +AL+ A+ +++ E ++R + +E T
Sbjct: 128 EGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERT 187
Query: 298 FKIIEDWF 305
+ + D F
Sbjct: 188 YTTLIDGF 195
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L R F++ Q+M+ V P+ T++S+ + A DL ++M G+PP +Y
Sbjct: 271 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 330
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ +C G+ +KA + M G +P+ S L+
Sbjct: 331 LINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI 367
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D S++G + EA R+ ++ +G + S YN ++ C E E
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH---GHCVLERME----------- 237
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ Q+M+ + P+ +++++ K + + AF + ++M G+ P +Y
Sbjct: 238 --EALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 295
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G C++ +A ++ M + G+ P+E + L+
Sbjct: 296 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLI 332
>gi|307110337|gb|EFN58573.1| hypothetical protein CHLNCDRAFT_140730 [Chlorella variabilis]
Length = 926
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V A+R + D I ++ LL+ C K +S E + LG++ EI
Sbjct: 421 GNVQAAMRTFSDMVDADIEPTERTAGALLH-CYAKARDAASARRVFEGMAQLGVRPNLEI 479
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+ +I V +T + AF LV++M+ G+ P +YG L K
Sbjct: 480 YTSLIDACVQAGGKQWT------------QFAFQLVEEMRREGLAPSAVTYGCLLAACEK 527
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G+ +A+ + + GV P + L+ + +A+++++ +++ RL
Sbjct: 528 AGDVTRAFALYKQACDEGVAPSDQMHDMLISMCTEAERLEEAVDLVKRL 576
>gi|85000739|ref|XP_955088.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303234|emb|CAI75612.1| hypothetical protein, conserved [Theileria annulata]
Length = 559
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
D V A+RL++D + G + N ++Y K ++ +
Sbjct: 182 FDAYVNNNSVDSAMRLFEDMKERG----KVKPNTIMYTTLIKGYGQNKQ----------- 226
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + IF+ M D V+PN T+ S+ + A L+++M S GI P L ++
Sbjct: 227 LDKAMRIFRLMQQDGVEPNTVTYNSIIDACARVGEMGSATRLLEEMLSSGIEPDLITFST 286
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+C + DK++++ + M E G++P+ ++LL+
Sbjct: 287 IIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLE 324
>gi|326492636|dbj|BAJ90174.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 631
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S+LG + + ++F +M+ ++P+ ++ +A+ V + P A +L+++M G+ P +
Sbjct: 368 SSLGHMAKCSKVFDKMVEAGIEPDPQVYSILAKGHVRAQQPGKAEELLERMCRLGVRPNV 427
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ + G+C + + D A V M ++GV P L+ + K+ K E+L
Sbjct: 428 VTFTTVISGWCSVADMDNATRVYRKMRDAGVRPNLRTFETLIWGYSEQKQPWKAEEVLQM 487
Query: 286 LRTLVRQVSESTFKIIEDWFDSV 308
++ + +ST+ ++ D + +V
Sbjct: 488 MQEAGIRPKQSTYSLVADAWKAV 510
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 1/140 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ +QM V PN F ++ + + D A D++ M+ FGI P + +Y
Sbjct: 303 LEEALRCVRQMKDAGVLPNVIVFNTLLKGFLDANDTAAADDVLGLMEHFGIKPDIVTYSH 362
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L F LG+ K +V M E+G+ P+ S L K V A++ K E+L R+ L
Sbjct: 363 QLNAFSSLGHMAKCSKVFDKMVEAGIEPDPQVYSILAKGHVRAQQPGKAEELLERMCRLG 422
Query: 291 RQVSESTF-KIIEDWFDSVD 309
+ + TF +I W D
Sbjct: 423 VRPNVVTFTTVISGWCSVAD 442
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ + + +M V+P+ T+ +VA ++ A +LV +M + R++G
Sbjct: 233 LEEAWGVVGRMRARGVEPDVVTYNTVASAYAKNDETWRAEELVVEMVRARLRTSERTWGI 292
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+C+ G ++A M ++GV+P + LLK
Sbjct: 293 IVGGYCREGRLEEALRCVRQMKDAGVLPNVIVFNTLLK 330
>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
Length = 855
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ F++ ++M+ P+ +T++ V E AF L ++MK G+ P + +Y +
Sbjct: 271 KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILI 330
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
FCK G ++A + M G P +AL+ + AK+V + +I HR+
Sbjct: 331 DSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRM 384
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 73/180 (40%), Gaps = 32/180 (17%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V +A L+ + + G+T + Y +L+ CK G +++ +F+
Sbjct: 304 VEKAFLLFQEMKMVGVTPDVYTYTILIDS-FCKAGL---------------IEQAQWLFE 347
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M + P T+T++ + + A D+ +M G P +YG + G CK G
Sbjct: 348 EMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAG 407
Query: 240 NTDKAYEVDAHM-GES---------------GVVPEEPELSALLKLSVDAKKVDKVYEIL 283
N KA+EV A + G S + P AL+ A KVD +E+L
Sbjct: 408 NISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELL 467
Score = 42.0 bits (97), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ QM+ D PN T+T++ + E A L+ M+ G P + +Y
Sbjct: 530 LDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTA 589
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G K G D + ++ M G P L+ A +DK +L ++
Sbjct: 590 LIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMK 646
>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 60/130 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
KR +++F++M + P+ TFT + + + + +A L+ QM G+ P Y
Sbjct: 341 KRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTI 400
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ CK G A+ V M ESG+ P+ +AL+ A +V + + + T
Sbjct: 401 VDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGP 460
Query: 292 QVSESTFKII 301
E TFK+I
Sbjct: 461 CPDEVTFKLI 470
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 4/120 (3%)
Query: 167 SNLGLKRGFEIFQQMITDK----VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
S L + F + ++++ D P+ + L + ++A +V+ M G
Sbjct: 87 SGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGRE 146
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P + +Y + G C+ G D A E+ +M G P+E AL+ KVD YE+
Sbjct: 147 PDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYEL 206
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 18/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL 169
+D K G + A L+++ GIT + YN+L+ C N R +D
Sbjct: 368 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC----------NAGRWDD--- 414
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
G ++ + MI K++PN TF+ + V + A +L K+M GI P +Y
Sbjct: 415 ----GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYT 470
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GFCK + DKA ++ M G P + L+ A ++D E+ ++
Sbjct: 471 SLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 527
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 52/131 (39%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + ++ M++ DPN TF + + +L ++M G+ +Y
Sbjct: 482 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 541
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFC+LG + A E+ M V P LL D + +K EI ++
Sbjct: 542 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 601
Query: 291 RQVSESTFKII 301
++ + II
Sbjct: 602 MELDIGIYNII 612
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 58/132 (43%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ EIF+++ K++ + + + + A+DL + G+ P +++Y
Sbjct: 588 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 647
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ G CK G +A + M E G P+ + L++ + K +++ L+
Sbjct: 648 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGF 707
Query: 292 QVSESTFKIIED 303
V ST K++ D
Sbjct: 708 SVDASTIKMVID 719
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ +A + + G+ L + Y LL C CK G ++ +
Sbjct: 641 GDIAKAFEYFTKIKEGGLKLDVYIYETLLRAC-CKSGR---------------MQSALAV 684
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M + K+ N + + + D A DL+KQMK G+PP + +Y + CK
Sbjct: 685 TREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCK 744
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ +A V M + G+ P + L+K
Sbjct: 745 AGDMQRAQTVIDEMSDVGLKPNLKTYTTLIK 775
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 58/232 (25%), Positives = 97/232 (41%), Gaps = 30/232 (12%)
Query: 5 NFLTPSLIRTSPF---LTFLSKISLPLMHQSNCHTYRSLLCWH-----MHSFTKPITDIK 56
N L LIR + ++ L+K+S+ + N HTY ++ + + + T IK
Sbjct: 596 NALIHGLIRKNQVERAVSVLNKMSIAGI-TPNEHTYTIIMRGYAATGDIAKAFEYFTKIK 654
Query: 57 QNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSK 116
+ D+ L KS +S+ T MS S+K AR +L +D ++
Sbjct: 655 EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMS--SQKIARNTFVYNIL---IDGWAR 709
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
RGDV+EA L + +G+ + H Y + C CK G + S++GLK
Sbjct: 710 RGDVWEAADLMKQMKEDGVPPNIHTYTSYINAC-CKAGDMQRAQTVIDEMSDVGLK---- 764
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
PN T+T++ + P+ A ++MK G+ P +Y
Sbjct: 765 -----------PNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAY 805
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 16/162 (9%)
Query: 96 KKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155
+K R + R ++ + GD+ AL + D R +G + YN L++
Sbjct: 549 QKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLI----- 603
Query: 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
R+N ++R + +M + PNE T+T + R A D AF+ +
Sbjct: 604 -------RKNQ----VERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTK 652
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
+K G+ + Y L CK G A V M +
Sbjct: 653 IKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIA 694
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 82/209 (39%), Gaps = 26/209 (12%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSE-------NGDRENDSNLG- 170
D A R++++ +G+ + YN+L+ CK G+ +R SN
Sbjct: 502 DFTNAFRIFEEMLKSGLQPDRAIYNLLIEAF-CKMGNMDRAIRILEKMQKERMQPSNRAF 560
Query: 171 ------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
+KR +I M P T+ ++ + K E A ++ +M
Sbjct: 561 RPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSI 620
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
GI P +Y + G+ G+ KA+E + E G+ + LL+ + ++
Sbjct: 621 AGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQS 680
Query: 279 VYEILHRLRTLVRQVSESTFK---IIEDW 304
+ + + ++++ +TF +I+ W
Sbjct: 681 ALAVTREMSS--QKIARNTFVYNILIDGW 707
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 21/210 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---------ESSENG-DREN 165
K D A L+ +A++N L+ Y+ +++ C+ G+ E E+G D
Sbjct: 359 KINDTQSADNLFKEAKTNLGDLNGIIYSNIIHA-HCQSGNMDRAEELVHEMEEDGIDAPI 417
Query: 166 DSNLGLKRGFEIFQQ-----MITDKVD-----PNEATFTSVARLAVAKEDPEMAFDLVKQ 215
D+ + G+ I Q ++ +++ P+ ++ + L V A + K+
Sbjct: 418 DAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYVKIGKVAKAIAISKE 477
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M+S GI ++Y + GF L + A+ + M +SG+ P+ + L++
Sbjct: 478 MESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGN 537
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+D+ IL +++ Q S F+ I + F
Sbjct: 538 MDRAIRILEKMQKERMQPSNRAFRPIIEGF 567
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 51/117 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + I ++M + + N T++ + + D AF + ++M G+ P Y
Sbjct: 468 VAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNL 527
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ FCK+GN D+A + M + + P +++ A + + +IL +R
Sbjct: 528 LIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMR 584
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M ++PN FTS+ D A ++MK+ GI + +Y + GF K
Sbjct: 300 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCTEEMKAEGIELTIVTYSILISGFGK 359
Query: 238 LGNTDKA----YEVDAHMGE-SGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ +T A E ++G+ +G++ S ++ + +D+ E++H +
Sbjct: 360 INDTQSADNLFKEAKTNLGDLNGII-----YSNIIHAHCQSGNMDRAEELVHEM 408
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 19/164 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCK-------CGSESSENGD 162
L+ ++ G++FE ++Y+ ++ G + H Y ++L +C CK E E G
Sbjct: 886 LEAFAQAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGF 945
Query: 163 REN----DSNLGLKRGFE-------IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ + +S L L G E I+Q++ + P+E T+ ++ + PE F
Sbjct: 946 QPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFS 1005
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255
L+ +M+S G+ PKL +Y + F K ++A E+ + +G
Sbjct: 1006 LMNKMRSLGLEPKLDTYRSLITAFNKQRMYEQAEELFEELRSNG 1049
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 81/190 (42%), Gaps = 16/190 (8%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
AL+L ++ R +GI YN L+ CS RE++ L+ +F M
Sbjct: 305 ALQLLNEVRRSGIRPDIITYNTLISACS------------RESN----LEEAVAVFSDME 348
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
+ + P+ T+ ++ + A +L K+++S G P +Y L+ F + GNT+
Sbjct: 349 SHRCQPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTE 408
Query: 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE 302
K ++ M + G +E + ++ + + D+ +I +++ R T+ ++
Sbjct: 409 KVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLI 468
Query: 303 DWFDSVDAAE 312
D E
Sbjct: 469 DSLGKASKVE 478
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 19/170 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA++++D +SNG+ + YN ++ C K G E K+ EIF M
Sbjct: 243 EAIKVFDSMKSNGLMPNLVTYNAVIDACG-KGGVE--------------FKKVVEIFDGM 287
Query: 182 ITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+++ V P+ TF S+ LAV E A L M GI + +Y L CK G
Sbjct: 288 LSNGVQPDRITFNSL--LAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGG 345
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
D A+E+ + M ++P S ++ ++D + + ++ L
Sbjct: 346 QMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFL 395
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 83/197 (42%), Gaps = 20/197 (10%)
Query: 111 LDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES-----SENGDRE 164
+D C K G F+ + ++D SNG+ + +N LL VCS E+ S D+
Sbjct: 267 IDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKG 326
Query: 165 NDSNL--------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
D ++ + FEI +M T + PN T++++ + A
Sbjct: 327 IDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDAL 386
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
++ +MK G+ SY L + KLG ++A +V M +G+ + +ALL
Sbjct: 387 NMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGY 446
Query: 271 VDAKKVDKVYEILHRLR 287
+ D+V + ++
Sbjct: 447 GKQYRYDEVRRVFEEMK 463
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 16/197 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + + LY+ + GI + + YN ++ C+C ++ L F
Sbjct: 233 KMGLKKDGIELYEKMKLTGIVPNVYTYNSMI----CRCCNDGK------------LNNAF 276
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M V N T+ ++ + A L+ +MK G+ P L SY + G+
Sbjct: 277 ELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGY 336
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C +GN DKA + M SG P + L+ +AK V +++ + S+
Sbjct: 337 CSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSK 396
Query: 296 STFKIIEDWFDSVDAAE 312
T+ I+ D D E
Sbjct: 397 VTYTILMDALVRSDNIE 413
Score = 45.8 bits (107), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 73/172 (42%), Gaps = 18/172 (10%)
Query: 117 RGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ + FE A R++++ + N + L + + +++ C C+ G L +GF
Sbjct: 129 KSNFFEKAWRVFNETKGN-VKLDVYSFGIMIKGC-CEVGY---------------LDKGF 171
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QM + PN +T++ D E L +M + +Y + GF
Sbjct: 172 EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 231
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K+G E+ M +G+VP ++++ + K++ +E+ +R
Sbjct: 232 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMR 283
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C G + A L+D+ R G+ + YN L+ G E E +
Sbjct: 266 CCNDGKLNNAFELFDEMRERGVACNVVTYNTLI-------GGLCQERRVLEAE------- 311
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ +M D + PN ++ ++ + + + A L QMKS G P L +Y +
Sbjct: 312 --RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIA 369
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
GF + N+ ++ M G+ P + + L+ V + ++K ++I
Sbjct: 370 GFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQI 418
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 69/149 (46%), Gaps = 2/149 (1%)
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
QMI + P TF ++ L + E A+ + + K + + S+G + G C++G
Sbjct: 107 QMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCEVG 165
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
DK +EV M E G+ P + L+ +++ ++ +++ L ++ T+
Sbjct: 166 YLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYT 225
Query: 300 IIEDWFDSVDAAEIGVLNWDVSKVREGIV 328
++ + F + + G+ ++ K+ GIV
Sbjct: 226 VLINGFFKMGLKKDGIELYEKMKLT-GIV 253
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ +A L++ +S+G + S YN+L+ G ++N D +
Sbjct: 340 GNLDKASSLFNQMKSSGQSPSLATYNILI------AGFSEAKNSAGVTD----------M 383
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M + P++ T+T + V ++ E AF + M+ G+ + YG + G C
Sbjct: 384 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 443
Query: 238 LGNTDKAYEVDAHMGESGVVPEE 260
+G+ +A ++ + E + P +
Sbjct: 444 VGDMKEASKLFKSLDEMHLKPND 466
>gi|15232594|ref|NP_190245.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206903|sp|Q9SNB7.1|PP264_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46610
gi|6523064|emb|CAB62331.1| hypothetical protein [Arabidopsis thaliana]
gi|332644660|gb|AEE78181.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS--------ENGD 162
L SKRG +RL + G+ + H+N +L CS + ++ +NG+
Sbjct: 430 LSAASKRGIWRWGVRLLNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGE 489
Query: 163 RENDSNLG-----LKRG------FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ + G L++G F ++ MI ++PN +T++A + ++ +
Sbjct: 490 KPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDT 549
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L+K+M S GI P + ++ + G + G + AYE M V P E L++
Sbjct: 550 LLKEMASKGIEPSVVTFNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALA 609
Query: 272 DAKKVDKVYEI 282
+ K YE+
Sbjct: 610 NDAKPRLAYEL 620
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 26/245 (10%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSE 159
+P+GV+ L D K G+V A RL+D+ + I+ Y + +C C+ G
Sbjct: 255 APDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAV--ICGLCQTGRVMEA 312
Query: 160 NG------------DRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARL 199
+ D + L +K F + QM+ + PN T+T++A
Sbjct: 313 DKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADG 372
Query: 200 AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ + A +L+ +M G+ + +Y + G CK GN D+A ++ M +G P+
Sbjct: 373 LCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 432
Query: 260 EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLN 317
+ L+ ++++ + +E+L ++ Q + TF ++ + F E G +L
Sbjct: 433 AVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 492
Query: 318 WDVSK 322
W + K
Sbjct: 493 WMLEK 497
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V EA R+ + S GI Y L+ CK G+ SS +
Sbjct: 235 KTGKVAEAERVLREMISEGIAPDGVIYTTLI-DGFCKLGNVSS---------------AY 278
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD-LVKQMKSFGIPPKLRSYGPALFG 234
+F +M K+ P+ T+T+V + + M D L +M + P +Y + G
Sbjct: 279 RLFDEMQKRKISPDFITYTAVI-CGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 337
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+CK G +A+ + M + G+ P +AL +VD E+LH +
Sbjct: 338 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 389
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 57/131 (43%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ ++M + PN T+ V L A ++++M S GI P Y + G
Sbjct: 208 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDG 267
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
FCKLGN AY + M + + P+ +A++ +V + ++ H + +
Sbjct: 268 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 327
Query: 295 ESTFKIIEDWF 305
E T+ + D +
Sbjct: 328 EVTYTALIDGY 338
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 68/173 (39%), Gaps = 23/173 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ +A++L D G Y L+ C S + R
Sbjct: 410 KAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM---DAYCKSRE-------------MVRAH 453
Query: 176 EIFQQMITDKVDPNEATFTSVAR---LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+ +QM+ ++ P TF + ++ ED E L+K M GI P +Y +
Sbjct: 454 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE---KLLKWMLEKGIMPNATTYNSLI 510
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+C N E+ M GVVP+ + L+K A+ + + + LHR
Sbjct: 511 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAW-FLHR 562
Score = 39.3 bits (90), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 21/190 (11%)
Query: 99 RRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS 158
R E E +D K G + EA L++ G+T + Y L CKCG +
Sbjct: 323 RLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGL-CKCGEVDT 381
Query: 159 ENGDRENDSNLGLK--------------------RGFEIFQQMITDKVDPNEATFTSVAR 198
N GL+ + ++ + M P+ T+T++
Sbjct: 382 ANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 441
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ A +L++QM + P + ++ + GFC G + ++ M E G++P
Sbjct: 442 AYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 501
Query: 259 EEPELSALLK 268
++L+K
Sbjct: 502 NATTYNSLIK 511
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 26/245 (10%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSE 159
+P+GV+ L D K G+V A RL+D+ + I+ Y + +C C+ G
Sbjct: 355 APDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAV--ICGLCQTGRVMEA 412
Query: 160 NG------------DRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARL 199
+ D + L +K F + QM+ + PN T+T++A
Sbjct: 413 DKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADG 472
Query: 200 AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ + A +L+ +M G+ + +Y + G CK GN D+A ++ M +G P+
Sbjct: 473 LCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPD 532
Query: 260 EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLN 317
+ L+ ++++ + +E+L ++ Q + TF ++ + F E G +L
Sbjct: 533 AVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLK 592
Query: 318 WDVSK 322
W + K
Sbjct: 593 WMLEK 597
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+R ++ ++M + PN T+ V L A ++++M S GI P Y
Sbjct: 304 LQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTT 363
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFCKLGN AY + M + + P+ +A++ +V + ++ H +
Sbjct: 364 LIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423
Query: 291 RQVSESTFKIIEDWF 305
+ E T+ + D +
Sbjct: 424 LEPDEVTYTALIDGY 438
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 18/172 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V EA R+ + S GI Y L+ CK G+ SS +
Sbjct: 335 KTGKVAEAERVLREMISEGIAPDGVIYTTLI-DGFCKLGNVSS---------------AY 378
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD-LVKQMKSFGIPPKLRSYGPALFG 234
+F +M K+ P+ T+T+V + + M D L +M + P +Y + G
Sbjct: 379 RLFDEMQKRKISPDFITYTAVI-CGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDG 437
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+CK G +A+ + M + G+ P +AL +VD E+LH +
Sbjct: 438 YCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 489
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 23/173 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ +A++L D G Y L+ C S RE + R
Sbjct: 510 KAGNIDQAVKLMKDMEVAGFHPDAVTYTTLM---DAYCKS-------RE------MVRAH 553
Query: 176 EIFQQMITDKVDPNEATFTSVAR---LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+ +QM+ ++ P TF + ++ ED E L+K M GI P +Y +
Sbjct: 554 ELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGE---KLLKWMLEKGIMPNATTYNSLI 610
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+C N E+ M GVVP+ + L+K A+ + + + LHR
Sbjct: 611 KQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAW-FLHR 662
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 21/190 (11%)
Query: 99 RRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS 158
R E E +D K G + EA L++ G+T + Y L CKCG +
Sbjct: 423 RLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGL-CKCGEVDT 481
Query: 159 ENGDRENDSNLGLK--------------------RGFEIFQQMITDKVDPNEATFTSVAR 198
N GL+ + ++ + M P+ T+T++
Sbjct: 482 ANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMD 541
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ A +L++QM + P + ++ + GFC G + ++ M E G++P
Sbjct: 542 AYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMP 601
Query: 259 EEPELSALLK 268
++L+K
Sbjct: 602 NATTYNSLIK 611
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
L D +S+G+ + YN L + SC+ GS E E+F++M
Sbjct: 278 LVDSMKSSGVAPDLYTYNTL--ISSCRRGSLYEEAA--------------EVFEEMKAAG 321
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
P++ T+ ++ + P A +++K+M++ G P + +Y + + + G D+A
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAM 381
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
E+ + M + G+ P+ + LL K D ++ +R Q + TF +
Sbjct: 382 ELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNAL 437
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C K GD+ AL + + GI L + L+ S C +R
Sbjct: 407 IDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALI---SGFCREGQVIEAERT------ 457
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++M+ + P++AT+T V K D + F L+K+M+ G P + +Y
Sbjct: 458 -------LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNV 510
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
L G CK G A + M GVVP++ + LL+ ++ A K
Sbjct: 511 LLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLERTLQAWK 555
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G EI+QQM+ V P+ T+ ++ D A LV +M G+ P +Y +
Sbjct: 349 GMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLID 408
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G CK G+ + A E+ M + G+ + +AL+
Sbjct: 409 GCCKEGDLESALEIRKEMVKEGIELDNVAFTALI 442
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 52/107 (48%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M + PN+ TFT++ ++ ++ +QM G+ P + +Y + G
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
CK+G+ +A ++ M + G+ P++ + L+ ++ EI
Sbjct: 376 CKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 17/200 (8%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
L L C K G++ EA + + A++ G+ L Q Y++ +++ K S +
Sbjct: 43 LHVMLRACLKEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYA-------- 94
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
+ ++M P E TFTSV V + + A L M + G L
Sbjct: 95 --------LSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLA 146
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G+C GN A + + ESG+VP + S L+ ++K +E +
Sbjct: 147 VATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEM 206
Query: 287 RTL-VRQVSESTFKIIEDWF 305
+T +R S I+E +
Sbjct: 207 KTKGIRSSVYSLNSILEGYL 226
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 21/193 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+D C K G++ +A Y + ++ GI S + N +L Y+ KC S
Sbjct: 187 IDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYL---KCQS------------- 230
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ F +F + + N TF ++ + A +L ++ + GI P + SY
Sbjct: 231 --WQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSY 287
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G C+ N + A +V M ++G P + L+ ++ + I HR++
Sbjct: 288 NNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKD 347
Query: 289 LVRQVSESTFKII 301
+++T II
Sbjct: 348 ANILPTDTTLGII 360
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 82/209 (39%), Gaps = 19/209 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYN-VLLYVC-------SCKCGSESSENGDRENDS 167
K G + EA L+D+ + GI+ + YN ++L C +CK E +NG N
Sbjct: 261 KEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAV 320
Query: 168 NLGL------KRG-----FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
+ K+G F IF +M + P + T + + DL +
Sbjct: 321 TFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKF 380
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
S G P Y + GF K GN + A V M E G+ P ++L+ +
Sbjct: 381 VSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNI 440
Query: 277 DKVYEILHRLRTLVRQVSESTFKIIEDWF 305
D ++L+ ++ ++ + + D F
Sbjct: 441 DLALKLLNDMKRKGLKMDIKAYGTLIDGF 469
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G FE L++ S G + YN ++ + +E + NL
Sbjct: 366 KAGRSFEGRDLFNKFVSQGFVPTCMPYNTII------------DGFIKEGNINLA----S 409
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++++M + P+ T+TS+ + ++A L+ MK G+ +++YG + GF
Sbjct: 410 NVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGF 469
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
CK + A+E+ + +G+ P ++++ K ++ V E + + +V +
Sbjct: 470 CKRRDMKSAHELLNELRGAGLSPNRFIYNSMI---TGFKNMNNVEEAIDLYKKMVNE 523
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K ++ AL+L +D + G+ + Y L+ + + D
Sbjct: 431 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLI------------DGFCKRRD---- 474
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K E+ ++ + PN + S+ + E A DL K+M + GIP L++Y
Sbjct: 475 MKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTS 534
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G K G A ++ M G++P++ + L+ + + + +IL +
Sbjct: 535 LIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDM 590
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 98/249 (39%), Gaps = 43/249 (17%)
Query: 63 DLTTGLC-----TLAFSK-KSTVNESSAPNTGTMS---NKSKKKARRESPEGVLRHKLD- 112
DL G C T AF+K + +++ P+ T S + K + + GV LD
Sbjct: 587 DLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDK 646
Query: 113 ---------------MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
+C K GD+ A L+DD GI + YN L+ CK G
Sbjct: 647 GLVPDVFTYTSLISNLC-KEGDLKAAFELHDDMCKKGINPNIVTYNALINGL-CKLGE-- 702
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+ + E+F + + N T++++ + AF L MK
Sbjct: 703 -------------IAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMK 749
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+PP Y + G CK GNT+KA + M E G + P +AL+ K+
Sbjct: 750 LVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLI 808
Query: 278 KVYEILHRL 286
+ Y+++ +
Sbjct: 809 EAYQLVEDM 817
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L R E+FQ+MI+ + PN +T++ + V + E A ++ MK G+ P + Y
Sbjct: 458 LTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNT 517
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ GFCK G ++ M G+ P
Sbjct: 518 VIIGFCKAGKMEEGKSYLVEMIAKGLKP 545
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRG 174
+ GDV EAL L + G+ + Y L+ C K +E G
Sbjct: 279 RAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTE-----------------G 321
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +M T + P+ +T++ V + D AF + ++M + I +Y + G
Sbjct: 322 KSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHG 381
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK+G+ +KA ++ + M G+ P+ + L++ + ++K YE+L ++
Sbjct: 382 LCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIK 434
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 55/117 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ +F +++ + P+ T+TS+ + D + AF+L M GI P + +Y
Sbjct: 633 LQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNA 692
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CKLG KA E+ + E G+ S ++ + + + +++ H ++
Sbjct: 693 LINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMK 749
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 76/161 (47%), Gaps = 25/161 (15%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+ K+G + EA+ ++ A++N ++ + C S+ G+R
Sbjct: 170 IDIYRKKGFLNEAVSVFLGAKTN---------EFIVGLACCNSLSKDLLKGNR------- 213
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSV----ARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
++ +++++ M+ V P+ T+T++ R+ +E + FD M+ G P L
Sbjct: 214 VELFWKVYKGMLGAIV-PDVYTYTNLINAYCRVGKVEEGKHVLFD----MEEKGCIPNLV 268
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+Y + G C+ G+ D+A E+ M G++P+ + L+
Sbjct: 269 TYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLI 309
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C K G+ +AL L+ GI S +N L+ + LG
Sbjct: 764 IDGCCKAGNTEKALSLFLGMVEEGIA-STPAFNALI-----------------DGFFKLG 805
Query: 171 -LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L +++ + M+ + + PN T+T + + + A L +M+ + P + +Y
Sbjct: 806 KLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYT 865
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
L G+ ++G + + + M G+ P++ S ++
Sbjct: 866 SLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMV 903
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 101/235 (42%), Gaps = 25/235 (10%)
Query: 94 SKKKARRESPEGVLRHKLDMC--SKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVC 149
S+ +AR P+ + L +C S G V EA +L+++ G + Y L+ Y
Sbjct: 239 SEMEAREIVPDSIAFSAL-ICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGY-- 295
Query: 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA 209
CK G +K+ F + QM+ + PN T+T++A + + A
Sbjct: 296 -CKLGE---------------MKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTA 339
Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
+L+ +M G+ + +Y + G CK GN +A ++ M E+G+ P+ + L+
Sbjct: 340 NELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDA 399
Query: 270 SVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSK 322
++ K E+L + Q + TF ++ + E G +L W + K
Sbjct: 400 YYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEK 454
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ ++ ++M + PN T++S+ L ++++M G+ P Y
Sbjct: 161 LQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTT 220
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFCKLGNT AY++ + M +VP+ SAL+
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALI 257
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ +A L + G+ + +NVL+ + C S E+G+R
Sbjct: 397 MDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLM---NGLCMSGKLEDGER------- 446
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + M+ + PN AT+ S+ + + + ++ ++ + M + G+ P +Y
Sbjct: 447 ------LLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNI 500
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK N +A+ + M E +AL+K KK+ + ++ +R
Sbjct: 501 LIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFEEMR 557
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
L D +S+G+ + YN L + SC+ GS E E+F++M
Sbjct: 278 LVDSMKSSGVAPDLYTYNTL--ISSCRRGSLYEEAA--------------EVFEEMKAAG 321
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
P++ T+ ++ + P A +++K+M++ G P + +Y + + + G D+A
Sbjct: 322 FSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAM 381
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
E+ + M + G+ P+ + LL K D ++ +R Q + TF +
Sbjct: 382 ELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNAL 437
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K F+ F++M+ ++PNE T+ + R + D + + L +MK G+ P L +Y
Sbjct: 511 IKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNA 570
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ FCK+ KA E+ M G+ P+ S L+K
Sbjct: 571 TIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIK 608
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 133 NGITLSQHHYNVLLYVCSCKCGSESSENG--------DRENDSNL--------------G 170
+G+ S + YN V C C + EN DR NL
Sbjct: 419 DGLLSSVYSYNA---VIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGD 475
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ + ++++ P+ TF+ + ++ + AFD K+M +GI P +Y
Sbjct: 476 VKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNI 535
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL---- 286
+ C G+TD++ ++ A M E+G+ P+ +A ++ +KV K E+L +
Sbjct: 536 LIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIG 595
Query: 287 --------RTLVRQVSES 296
TL++ +SES
Sbjct: 596 LKPDNFTYSTLIKALSES 613
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F Q+ + P+ + +V V ++A+ +QM+S G P +Y + G
Sbjct: 166 DVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGV 225
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G D+A + M + G P + L+ + A +VD+ + L +R +E
Sbjct: 226 CKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNE 285
Query: 296 STFK 299
+T +
Sbjct: 286 ATIR 289
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSE-------NGDRENDS 167
K G+ +AL ++ + NG++ S Y L+ +C + + + E G R N+
Sbjct: 331 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 390
Query: 168 NLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
L + I +M P+ T+ + E E A +V++M
Sbjct: 391 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM 450
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ P + SY + GFC+ G D+A+++ M E GV P+ S+L++
Sbjct: 451 VEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQ 502
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F + + M + + PN ++ + + + A++++++M G P +Y
Sbjct: 265 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L G+CK GN +A + A M +GV P +AL+ A+ +++ E ++R
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 384
Query: 291 RQVSESTFKIIEDWF 305
+ +E T+ + D F
Sbjct: 385 LRPNERTYTTLIDGF 399
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L R F++ Q+M+ V P+ T++S+ + A DL ++M G+PP +Y
Sbjct: 475 LDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTT 534
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ +C G+ +KA + M G +P+ S L+
Sbjct: 535 LINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI 571
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D S++G + EA R+ ++ +G + S YN ++ C E E LG
Sbjct: 396 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIH---GHCVLERMEEA-------LG 445
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ Q+M+ + P+ +++++ K + + AF + ++M G+ P +Y
Sbjct: 446 ------VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSS 499
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G C++ +A ++ M + G+ P+E + L+
Sbjct: 500 LIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLI 536
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 51/111 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E++++MI +V PN T+ + R + + + +M+ G P + +Y + +
Sbjct: 200 EVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAY 259
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK+G D+A+ + M G+ P + ++ + + +EIL +
Sbjct: 260 CKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEM 310
>gi|226493938|ref|NP_001152190.1| ATP binding protein [Zea mays]
gi|195653677|gb|ACG46306.1| ATP binding protein [Zea mays]
gi|413926813|gb|AFW66745.1| ATP binding protein [Zea mays]
Length = 376
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 80/201 (39%), Gaps = 19/201 (9%)
Query: 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY--VCSCKCGS---- 155
+P G L D +RG+ E R+ R +G+ H YN L+ V + G+
Sbjct: 146 APRGALLALADAVCRRGEPREISRVLPVLRDHGVRADAHLYNALMKANVAADDPGAVLRV 205
Query: 156 ---ESSENGDRE----NDSNLGLKRGFEI------FQQMITDKVDPNEATFTSVARLAVA 202
S+ D + N GL R + M + P+ T+TS+
Sbjct: 206 FRQMRSDGVDPDLVTYNTLIFGLARAGMVAKARAFLDAMAAEGHLPDVVTYTSLMNGMCV 265
Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
K D A L+++M+ G P R+Y L G CK DKA EV M +G E P
Sbjct: 266 KGDALGALKLLEEMQGKGCQPNERTYSTLLMGLCKNKKLDKAVEVYKSMAAAGTKLESPA 325
Query: 263 LSALLKLSVDAKKVDKVYEIL 283
++ ++ + V YE+
Sbjct: 326 YASFVRALCRSGSVADAYEVF 346
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 34/223 (15%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA + D S+G + YN L++ C+ G +R
Sbjct: 337 KAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHG-HCRAGQT---------------ERAR 380
Query: 176 EIFQQMITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
E+ M+ + PN T+T+ V+ L A PE A + QMKS G P L +Y + G
Sbjct: 381 ELLSDMVARGLAPNVVTYTALVSGLCKANRLPE-ACGVFAQMKSSGCAPNLFTYTALILG 439
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
FC G D ++ M +G+ P+ L + + + EIL R +R
Sbjct: 440 FCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRS-- 497
Query: 295 ESTFKIIEDWFDSV------DAAEIGVLNWDVSKVREGIVRGG 331
E W D V + G + + VR+ +VRGG
Sbjct: 498 -------EAWGDEVYRFAVDGLLDAGKMEMALGFVRD-MVRGG 532
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 21/196 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYN-VLLYVC-------SCKCGSESSENGD 162
+D K G V EAL L+++ G T ++ +N ++L +C +C+ E E D
Sbjct: 122 MDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM-EARD 180
Query: 163 RENDS-NLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
DS + G L +++F++M+ + P+ T+ V + A
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L K M+S G P ++ + CK G D+A+ + M + G VP+ S L+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300
Query: 271 VDAKKVDKVYEILHRL 286
+VD +L +
Sbjct: 301 CSIARVDDARHLLEDM 316
Score = 45.4 bits (106), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 58/127 (45%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M PN + ++ + + A + +M++ IPP SYG + G
Sbjct: 137 LFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLA 196
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G ++AY++ M +SG+ P + ++ A +D+ E+ +R+ + S
Sbjct: 197 KAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRF 256
Query: 297 TFKIIED 303
TF I+ D
Sbjct: 257 TFNILID 263
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 16/173 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K G + EA +L+ +GIT S YNV+++ C + +
Sbjct: 192 IDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHG---MCLAYT------------- 235
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F+ M + P+ TF + + + AF L+K+M G P + +Y
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYST 295
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G C + D A + M + P + L+ A ++ + E+L
Sbjct: 296 LISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVL 348
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K G + +A L+ +G+T S Y L++ C + S ++
Sbjct: 17 IDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGL---CMANSFDDAR-------- 65
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F M P+ T+ + + + E A DL+K+M G P + +Y
Sbjct: 66 -----ELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK G ++A + M G P + ++ K+D+ ++ H +
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM 176
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 82/197 (41%), Gaps = 16/197 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + + LY+ + GI + + YN ++ C+C ++ L F
Sbjct: 246 KMGLKKDGIELYEKMKLTGIVPNVYTYNSMI----CRCCNDGK------------LNNAF 289
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M V N T+ ++ + A L+ +MK G+ P L SY + G+
Sbjct: 290 ELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGY 349
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C +GN DKA + M SG P + L+ +AK V +++ + S+
Sbjct: 350 CSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSK 409
Query: 296 STFKIIEDWFDSVDAAE 312
T+ I+ D D E
Sbjct: 410 VTYTILMDALVRSDNIE 426
Score = 45.8 bits (107), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 73/172 (42%), Gaps = 18/172 (10%)
Query: 117 RGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ + FE A R++++ + N + L + + +++ C C+ G L +GF
Sbjct: 142 KSNFFEKAWRVFNETKGN-VKLDVYSFGIMIKGC-CEVGY---------------LDKGF 184
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QM + PN +T++ D E L +M + +Y + GF
Sbjct: 185 EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 244
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K+G E+ M +G+VP ++++ + K++ +E+ +R
Sbjct: 245 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMR 296
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C G + A L+D+ R G+ + YN L+ G E E +
Sbjct: 279 CCNDGKLNNAFELFDEMRERGVACNVVTYNTLI-------GGLCQERRVLEAE------- 324
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ +M D + PN ++ ++ + + + A L QMKS G P L +Y +
Sbjct: 325 --RLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIA 382
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
GF + N+ ++ M G+ P + + L+ V + ++K ++I
Sbjct: 383 GFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQI 431
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 70/151 (46%), Gaps = 2/151 (1%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F QMI + P TF ++ L + E A+ + + K + + S+G + G C+
Sbjct: 118 FNQMIGRGLVPGSNTFNNLLILLIKSNFFEKAWRVFNETKG-NVKLDVYSFGIMIKGCCE 176
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
+G DK +EV M E G+ P + L+ +++ ++ +++ L ++ T
Sbjct: 177 VGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYT 236
Query: 298 FKIIEDWFDSVDAAEIGVLNWDVSKVREGIV 328
+ ++ + F + + G+ ++ K+ GIV
Sbjct: 237 YTVLINGFFKMGLKKDGIELYEKMKLT-GIV 266
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ +A L++ +S+G + S YN+L+ G ++N D +
Sbjct: 353 GNLDKASSLFNQMKSSGQSPSLATYNILI------AGFSEAKNSAGVTD----------M 396
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M + P++ T+T + V ++ E AF + M+ G+ + YG + G C
Sbjct: 397 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 456
Query: 238 LGNTDKAYEVDAHMGESGVVPEE 260
+G+ +A ++ + E + P +
Sbjct: 457 VGDMKEASKLFKSLDEMHLKPND 479
>gi|384496624|gb|EIE87115.1| hypothetical protein RO3G_11826 [Rhizopus delemar RA 99-880]
Length = 511
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 24/221 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+++G++ AL ++ + + GI + Y+ L+ C + + D+ L +
Sbjct: 162 AQQGNLQLALEIFKEMKQKGIAPTVLSYSFLIGACRASSSDVAFKLLKEAEDNGLPVDSQ 221
Query: 175 FEIFQQMI-----TDKVD----------------PNEATFTSVARLAVAKEDPEMAFDLV 213
++ ++ D++D P+E T V R+A + D ++A D++
Sbjct: 222 PRMYFNVLRLGTREDEIDIVTYCWNKAVGKYSLRPDEGTCLQVLRVAAKRGDSKLAKDVI 281
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL-KLSVD 272
+Q+ + G P K + P + + + A+ V M SGV P + +L KLS D
Sbjct: 282 RQLSTSGYPYKQHYFTPLMEAYLVKDDLVSAFNVLDIMRVSGVPPTIKSIQSLREKLSSD 341
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEI 313
+K +D Y+IL LR + V F ++ SVD ++
Sbjct: 342 SKALDDAYDILKELRKKKKSVDIVDFNVL--LLASVDNGDV 380
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 18/162 (11%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
LR KL SK D +A + + R ++ +NVLL S +NGD E
Sbjct: 334 LREKLSSDSKALD--DAYDILKELRKKKKSVDIVDFNVLLLA--------SVDNGDVE-- 381
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
R F I+++ V P+ T+ +V + V +M ++++MK + P
Sbjct: 382 ------RTFGIYREAAKFGVIPDVDTYNAVLEVCVKGRVNKMDRAVIEEMKKANVSPNAD 435
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
++ + C N +KA+ M E G +P + L K
Sbjct: 436 TFAKMIELSCNRTNYEKAFNYLEEMKERGFLPPQTCYEVLAK 477
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGL-KR 173
+ G+V AL+L ++ +S GI + Y+ L++ VC N+GL +
Sbjct: 617 QNGNVAAALQLLENMKSKGILPNCATYSSLIHGVC------------------NIGLVED 658
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ +M + PN +T++ + A +M SF I P +Y +
Sbjct: 659 AKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMID 718
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G+CKLGN +KA + M ESG+VP+ + L A +D +++ ++ T V
Sbjct: 719 GYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPV 778
Query: 294 SESTF-KIIEDW 304
E T+ ++ W
Sbjct: 779 DEITYTTLVHGW 790
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + +A++L+D+ +++G+ + H Y +++ C + E D EN +
Sbjct: 549 GKLDDAIKLWDEFKASGLISNIHTYGIMM---EGYCKANRIE--DVEN-----------L 592
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F ++++ K++ N + + + + A L++ MKS GI P +Y + G C
Sbjct: 593 FNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCN 652
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+G + A + M + G VP +AL+
Sbjct: 653 IGLVEDAKHLIDEMRKEGFVPNVVCYTALI 682
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F+ M ++ P+ +FT+V E A +L +M+ GI P + +Y + G
Sbjct: 207 EVFRVM-SEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGL 265
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
C+ G D A+E+ M GV P AL+ + DKV IL +
Sbjct: 266 CQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEM 316
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ E+F +M + PN T+ + + AF+L ++M G+ P L++YG
Sbjct: 236 MENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGA 295
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G KL DK + M +G P
Sbjct: 296 LINGLIKLNFFDKVNHILDEMIGAGFNP 323
>gi|312076308|ref|XP_003140803.1| hypothetical protein LOAG_05218 [Loa loa]
gi|307764034|gb|EFO23268.1| hypothetical protein LOAG_05218 [Loa loa]
Length = 546
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 9/103 (8%)
Query: 486 SNDDWYWLYATVNC--KSLLVTNDEMRDH--LFQLLGTSFFPRWKEKHQIRLSVSRDGLN 541
SNDD + L A + + +TND +H + L G S F RW E+ +RL D +
Sbjct: 449 SNDDLFILLAVMELGRNAYFLTNDSFMNHRNMLTLSGQSLFDRWVEQRAVRL----DNGD 504
Query: 542 LLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
++MP ++ E+ENG +H+PV T A +LC R +
Sbjct: 505 VIMPSKFASYAHETENG-YHIPVKTVSKSVALYSFLCGRRKHI 546
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 87/191 (45%), Gaps = 18/191 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + +A+ ++++ R G+ + + L+ CK G+ ++ G
Sbjct: 326 KAGRIQDAVEMFEEMRERGVNPNTVVFTTLID-AHCKEGNVAA---------------GL 369
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M T + + + ++A D + A D+V++M++ G+ P +Y + GF
Sbjct: 370 ELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGF 429
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRLRTLVRQVS 294
CK G D A E+ M + GV +E + L+ LS + VD IL + +
Sbjct: 430 CKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDS-ERILCEMMEAGLEPD 488
Query: 295 ESTFKIIEDWF 305
+T+ ++ D F
Sbjct: 489 NTTYTMVIDAF 499
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 69/157 (43%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ A+ + + G+ L + Y L+ S S++G R DS
Sbjct: 426 IDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLI--------SGLSKSG-RSVDSE-- 474
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
I +M+ ++P+ T+T V D + F L+K+M++ G P + +Y
Sbjct: 475 -----RILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNV 529
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFC LG A + M GV P++ + LL
Sbjct: 530 VMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILL 566
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/196 (18%), Positives = 82/196 (41%), Gaps = 18/196 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL 169
+D K G+V L L+ + + GI YN L +C +
Sbjct: 356 IDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVR----------------- 398
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK +I ++M + + P++ T+T++ + + +MA ++ ++M G+ +Y
Sbjct: 399 DLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYT 458
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G K G + + + M E+G+ P+ + ++ V +++L ++
Sbjct: 459 TLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNK 518
Query: 290 VRQVSESTFKIIEDWF 305
R+ T+ ++ + F
Sbjct: 519 GRKPGVVTYNVVMNGF 534
Score = 42.7 bits (99), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ V P TF ++ D A L M G+ P + +YG + G C
Sbjct: 266 MFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLC 325
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
K G A E+ M E GV P + L+ V E LHR
Sbjct: 326 KAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLE-LHR 373
Score = 42.0 bits (97), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/114 (19%), Positives = 48/114 (42%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ + Q++ V P F + R + A ++ +M G+PP + ++ +
Sbjct: 228 AYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMS 287
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G CK + + A + M ++GV P+ A ++ A ++ E+ +R
Sbjct: 288 GMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMR 341
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 19/174 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C+ G + EA L D S G+T + YN L+Y CK G L R
Sbjct: 745 CAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGL-CKSGK---------------LSR 788
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F ++ + + PN T+ ++ + AF L ++M GI P + +Y ++
Sbjct: 789 AVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIY 848
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV---DAKKVDKVYEILH 284
G C G ++A ++ M E+ V P L+ + + +++ K+Y+ +H
Sbjct: 849 GLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMH 902
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 17/152 (11%)
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
CK G + +LG E+F IT +AK+ ++
Sbjct: 545 CKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHF--------------IAKQWHKVN- 589
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
D+ +M + G+ P L +YG + G+CK GN +A + M +G+ P SAL+
Sbjct: 590 DIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCF 649
Query: 271 VDAKKVDKVYEILHRLRT--LVRQVSESTFKI 300
KVD+ +L +L ++ S ST +I
Sbjct: 650 YKEGKVDEANLVLQKLVNIDMIPGCSISTIEI 681
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + +A L++ R+ Y+ L++ C+ GS + F
Sbjct: 712 KSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAAS-GS---------------IDEAF 755
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ M++ + PN T+ S+ A +L +++S GI P +Y + +
Sbjct: 756 SLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEY 815
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G T +A+++ M E G+ P S L+
Sbjct: 816 CKEGKTTEAFKLKQKMVEEGIQPTVITYSILI 847
Score = 42.7 bits (99), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG + +A R+ ++ R GI ++ YN ++ CK G ++
Sbjct: 336 QRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGL-CKLGR---------------MEEVQ 379
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ Q+M + P++ ++ ++ + AF++ + M G+ +Y L GF
Sbjct: 380 KVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGF 439
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
C L D A + M + GV P E S LL A K ++ +
Sbjct: 440 CSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNL 486
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 54/125 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F+ + + P+ T++S+ A + AF L M S G+ P + +Y ++G C
Sbjct: 722 LFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLC 781
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G +A + + G+ P + L+ K + +++ ++ Q +
Sbjct: 782 KSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVI 841
Query: 297 TFKII 301
T+ I+
Sbjct: 842 TYSIL 846
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G V +A+ ++ G+ ++ Y+ ++ C CG +E+ R
Sbjct: 230 RDGRVAQAVEFVEEMEGMGLEVNLVAYHAVM---DCYCGMGWTEDARR------------ 274
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPALFG 234
I + + + PN T+T + + E A +VK+MK G I +YG + G
Sbjct: 275 -ILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMING 333
Query: 235 FCKLGNTDKAYEVDAHMGESGV 256
+C+ G D A V M ++G+
Sbjct: 334 YCQRGRMDDATRVRNEMRDAGI 355
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + G VFEAL ++D+ + GI Q+ YN L+ DR D+
Sbjct: 377 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI---------SGFLKADRFGDA--- 424
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F+ M PN T + A + MKS GI P + +
Sbjct: 425 ----LELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNA 480
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
LFG K G A V + GV P+ + ++K A K D+ +I + +
Sbjct: 481 VLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 536
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 171 LKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK E+F++M++ D++ P+ T++ + + + A +++ M+S G P + +Y
Sbjct: 251 LKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYS 310
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GFCK G ++A EV M SG+ P+ + L+ ++D+ E+L + +
Sbjct: 311 VLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEM 370
Query: 290 VRQVSESTFKII 301
+ TF ++
Sbjct: 371 KCKADAVTFNVL 382
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 16/211 (7%)
Query: 96 KKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG 154
KK+RR P + L D G + EA+ L+++ S L +L C G
Sbjct: 226 KKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGG 285
Query: 155 SESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
R +I + M ++ DPN ++ + + E A ++
Sbjct: 286 KAD---------------RARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFD 330
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+MKS G+ P Y + FC +G D+A E+ M E + + LLK
Sbjct: 331 EMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREG 390
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+ D+ +L L +++ +++I+ ++
Sbjct: 391 RFDEALRMLENLAYEGVYLNKGSYRIVLNFL 421
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
S +L H L M + G EA + + R GI YN+L+ S +CG+
Sbjct: 314 STYNLLVHALFMEGRMG---EADDMIKEMRKKGIIPDAITYNILINGYS-RCGNA----- 364
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
KR F++ +M++ ++P T+TS+ + + + A DL +++ G+
Sbjct: 365 ----------KRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 414
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P + + + G C GN ++A+ + M V P+E + L++ KV++
Sbjct: 415 SPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 474
Query: 282 ILHRLR 287
+L ++
Sbjct: 475 LLDEMK 480
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S+ G+ A L+++ S GI + Y L+YV S R N +K
Sbjct: 359 SRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLS------------RRNR----MKEA 402
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++F++++ V P+ F ++ A + E AF L+K+M +PP ++ + G
Sbjct: 403 DDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 462
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C+ G ++A + M G+ P+ + L+
Sbjct: 463 RCREGKVEEARMLLDEMKXRGIKPDHISYNTLI 495
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL--- 171
S RG++ A R+ D R GI + Y L+ CK G +G + +GL
Sbjct: 219 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS-GMCKEGRLEEASGLFDKMVEIGLVPN 277
Query: 172 -----------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
+R F +M+ + P+ +T+ + + A D++K
Sbjct: 278 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 337
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+M+ GI P +Y + G+ + GN +A+++ M G+ P ++L+
Sbjct: 338 EMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLI 390
>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 418
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ K M S + P L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 47/106 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F + + P+ +F ++ + D + F L M++ G+ P + +Y + G C
Sbjct: 158 VFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLC 217
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
K D A E+ M ++G+VP + L+ +VD EI
Sbjct: 218 KESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEI 263
>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
origanoides]
Length = 431
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 EXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFE--HRKRMIQENI 348
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EI++QM++ + P+ T+ ++ K D + A DL+ M G+ P +Y + G
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGC 327
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 328 CKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 374
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V EA+ ++ +G H Y+++++ CG+ G+ + +GF
Sbjct: 158 GMVREAMAVFAGMWPDGCAPDSHVYSIMVHG---LCGA--GRAGEAVALLTDAMGKGFV- 211
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
PN A + ++ + D E+A D+ K M+S G P +R+Y + GFCK
Sbjct: 212 ----------PNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCK 261
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G ++A + + M E+G+ P + L++ ++ + +LH + +E T
Sbjct: 262 SGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWT 321
Query: 298 FKIIED 303
++ D
Sbjct: 322 CLVLID 327
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 75/172 (43%), Gaps = 18/172 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFE 176
GD+ A+ ++ +S G + Y L +C CK G ++R
Sbjct: 228 GDLELAIDIFKGMQSKGCLPNVRTYTQL--ICGFCKSGK---------------VERAMV 270
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++ +MI + PN T+T++ + ++ E AF L+ M++ G+ P + + C
Sbjct: 271 LYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALC 330
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
K G ++A + + + G+ + ++++ + K D + ++ ++ T
Sbjct: 331 KHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIIT 382
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 21/192 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGL-KR 173
+ G+V AL+L ++ +S GI + Y+ L++ VC N+GL +
Sbjct: 640 QNGNVAAALQLLENMKSKGILPNCATYSSLIHGVC------------------NIGLVED 681
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ +M + PN +T++ + A +M SF I P +Y +
Sbjct: 682 AKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMID 741
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G+CKLGN +KA + M ESG+VP+ + L A +D +++ ++ T V
Sbjct: 742 GYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPV 801
Query: 294 SESTF-KIIEDW 304
E T+ ++ W
Sbjct: 802 DEITYTTLVHGW 813
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + +A++L+D+ +++G+ + H Y +++ C + E D EN +
Sbjct: 572 GKLDDAIKLWDEFKASGLISNIHTYGIMM---EGYCKANRIE--DVEN-----------L 615
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F ++++ K++ N + + + + A L++ MKS GI P +Y + G C
Sbjct: 616 FNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCN 675
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+G + A + M + G VP +AL+
Sbjct: 676 IGLVEDAKHLIDEMRKEGFVPNVVCYTALI 705
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F+ M ++ P+ +FT+V E A +L +M+ GI P + +Y + G
Sbjct: 230 EVFRVM-SEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGL 288
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
C+ G D A+E+ M GV P AL+ + DKV +L +
Sbjct: 289 CQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEM 339
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ E+F +M + PN T+ + + AF+L ++M G+ P L++YG
Sbjct: 259 MENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKTYGA 318
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G KL DK V M SG P
Sbjct: 319 LINGLIKLNFFDKVNHVLDEMIGSGFNP 346
>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 418
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ KQM S + L +Y ++G
Sbjct: 227 ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F + + P+ +F ++ + D + F L M++ G+ P + +Y + G C
Sbjct: 158 VFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLC 217
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K D A E+ M ++G+VP + L+ +VD EI ++
Sbjct: 218 KESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQM 267
>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
salviifolia]
Length = 431
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFE--HRKRMIQENI 348
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 326 GCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKM 374
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L DD G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGC-CKEGD---------------LDSAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P +Y + F
Sbjct: 338 EHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|297811553|ref|XP_002873660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319497|gb|EFH49919.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 674
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 19/191 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS--------ENGD 162
L S+RG +RL + G+ H+N +L CS + ++ +NG+
Sbjct: 439 LSAASRRGIWRWGVRLLNKMEDKGLKPQSRHWNAVLVACSKASETTAAIQIFKAMVDNGE 498
Query: 163 RENDSNLG-----LKRG------FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ + G L++G F ++ MI ++PN +T++A + ++ +
Sbjct: 499 KPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDT 558
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L+K+M S GI P + +Y + G + G + AYE M V P E L++
Sbjct: 559 LLKEMASKGIEPSVVTYNAVISGCARNGLSGVAYEWFHRMRGEKVEPNEITYEMLIEALA 618
Query: 272 DAKKVDKVYEI 282
+ K YE+
Sbjct: 619 NDAKPRLAYEL 629
>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
Length = 820
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EA++L ++ + G+T + HY L+ S G+ +N
Sbjct: 406 MDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLI--------SGYCLKGEMQNAQ--- 454
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++F++M+ ++P+ T+ +A FDL+ +M G+ P +YG
Sbjct: 455 -----QVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGI 509
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
A+ GFC+ GN +A + + E G+ E S+++ + + D Y + R+
Sbjct: 510 AIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRV 565
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA +L+ + GI Y VLL + + E +E S L
Sbjct: 656 KAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHN 715
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ M +++P+ +T + E A +L +M G+ P +Y + G+
Sbjct: 716 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 775
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
C G KA ++ M + G+ P+E S L + S+ ++K+
Sbjct: 776 CSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 816
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 90/198 (45%), Gaps = 24/198 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS-ESSENGDRENDSNL 169
+D K+ V EA L+++AR+ G + YN ++ CKCG E++ + +
Sbjct: 37 IDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGL-CKCGRIENALTLYDDMAIHF 95
Query: 170 GLK--------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA 209
G + +G ++ ++M PN T+ ++ + + + A
Sbjct: 96 GFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEA 155
Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV--DAHMGESGVVPEEPELSALL 267
F L++QM + G PP+L ++G + G CK G + A+ V + M ESG+ P+ +++L
Sbjct: 156 FSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVL 215
Query: 268 KLSVDAKKVDKVYEILHR 285
+++ + + R
Sbjct: 216 DGLCKEQRILDAHNVFKR 233
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ + ++M+ P+ T+T++ + A +++ M + G P +Y
Sbjct: 329 LREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSS 388
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G CK G +A M VV P SAL+ A K+D+ YE L R+
Sbjct: 389 IVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRA 448
Query: 290 VRQVSESTFKII 301
R TF I+
Sbjct: 449 GRIPDVVTFSIL 460
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 178 FQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
F++M D+V P+ ++++ + A++ +++M G P + ++ + G C
Sbjct: 406 FEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLC 465
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
G D E+ M E G VP+ + L+ A +VD+ +++ ++R+
Sbjct: 466 DAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRS 517
>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 657
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 19/193 (9%)
Query: 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL 126
G C A S + + SS G + + R E V ++ K D + L
Sbjct: 210 GCCPNAVSYTTVI--SSMCEVGMVKEGRQLAERFEPVVSVYNALINGLCKERDYKGGVEL 267
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
+ GI+ + Y+ L+ +E S +G ++ F + QM+
Sbjct: 268 MSEMVEKGISPNVISYSTLI--------NELSNSGQ--------IELAFSLLAQMLKRGC 311
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
PN T +S+ + + A D+ QM + FG+ P + +Y + GFC GN DKA
Sbjct: 312 HPNIHTLSSLVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAV 371
Query: 246 EVDAHMGESGVVP 258
V HM E G P
Sbjct: 372 SVFLHMEEIGCSP 384
>gi|125541439|gb|EAY87834.1| hypothetical protein OsI_09254 [Oryza sativa Indica Group]
Length = 502
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
GL+ G + +M V+P+ T+ S+ A + P A DL +M GI P SY
Sbjct: 62 GLEAGLAVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRAGIAPDSWSYN 121
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
P + + G+ + AY V A M E G+ P + + LL A Y + L+
Sbjct: 122 PLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRA 181
Query: 290 VRQVSESTFKII 301
VS T+ +
Sbjct: 182 GLPVSIVTYNTM 193
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 65/132 (49%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E++++MI D P+ T++S+ + D E L+K+M++ G+ P + ++ +
Sbjct: 209 AMEVYRRMILDGFRPSLQTYSSLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIR 268
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
+ G ++AYE+ M + G P+ + L+ A+K+D E+ +++T +
Sbjct: 269 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKP 328
Query: 294 SESTFKIIEDWF 305
T+ + D F
Sbjct: 329 DRVTYITLLDRF 340
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 91/217 (41%), Gaps = 33/217 (15%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR-----EN 165
+D K G+ EA D R GI + H YN L+ CG D +N
Sbjct: 372 VDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLI------CGLLRVHRLDDALEIFDN 425
Query: 166 DSNLGLK--------------------RGFEIFQQMITDKVDPN-EATFTSVARLAVAKE 204
+LG+K E F++M T + PN A S+ LA A
Sbjct: 426 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGR 485
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
D E A + +K G+ P +Y + + K+G D+A ++ + M E+ P+ ++
Sbjct: 486 DRE-AKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVN 544
Query: 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+L+ A +VD+ +++ R++ + + + T+ +
Sbjct: 545 SLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTL 581
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 7/164 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ E+F+ M+ PN TF ++ ++ +A ++ +M G P + +Y
Sbjct: 591 IQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 650
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+FG K G +A H + V P+ L LL V A ++ Y+I+ L
Sbjct: 651 IIFGLVKNGQVKEAM-CFFHQMKKLVYPDFVTLCTLLPGVVKAGLIEDAYKIIANF--LY 707
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLN---WDVSKVREGIVRGG 331
+ ED S+ AE G+ N + V GI R G
Sbjct: 708 SCADQPANLFWEDLMGSI-LAEAGIDNAVSFSERLVANGICRDG 750
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 4/141 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M T + P+ T+ ++ D + +M+ G P + ++ +
Sbjct: 316 EVFAKMKTGRHKPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDAL 375
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK GN +A+ M + G++P + L+ + ++D EI + +L + +
Sbjct: 376 CKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTA 435
Query: 296 STFKIIEDWF----DSVDAAE 312
T+ + D++ DSV A E
Sbjct: 436 YTYIVFIDYYGKSGDSVSALE 456
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + G VFEAL ++D+ + GI Q+ YN L+ DR D+
Sbjct: 342 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI---------SGFLKADRFGDA--- 389
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F+ M PN T + A + MKS GI P + +
Sbjct: 390 ----LELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNA 445
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
LFG K G A V + GV P+ + ++K A K D+ +I + +
Sbjct: 446 VLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 501
>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
Length = 795
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 20/211 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE----------NDS 167
G++ +AL L+D+A +G+T + Y VL+ C + ++ + R+ +
Sbjct: 308 GEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTDETYKLCRQMIEQGLLPSTYEF 367
Query: 168 NL---GLKR------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
NL GL R +F ++ D P+ T+ + A +L +MK
Sbjct: 368 NLVIKGLLRNKQWEDAIALFD-LVVDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKE 426
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
G+ P + + L G+C+ G D+A ++ + M G P E + L+K + K DK
Sbjct: 427 AGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYIKKKAFDK 486
Query: 279 VYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309
Y +L+ + E T+ I+ + VD
Sbjct: 487 AYALLNEMHQNGVSCGEYTYNILINGLCMVD 517
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 47/109 (43%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F +M + + V R V A L +M G+ P R Y +
Sbjct: 172 ALTLFDEMRCKGYYADAKMYDVVMRACVVGRMHGDAVRLFDEMAGAGVKPDERVYAITIT 231
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
G CKL + D+A +V M E+G+ P + ++++ + V ++D+ +
Sbjct: 232 GLCKLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDEALRL 280
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N+
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDANV------ 227
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 228 -LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G V A+ +Y S ++ YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ ++ +MI + P++ T+T++ + D E AF+ K+M I
Sbjct: 292 ---------LKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+Y + G C+ G + A ++ M G+ PE
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ +G ++ ++M PN T+ ++ + + + AF L+++M + G PP+L ++G
Sbjct: 52 VDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGL 111
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ G CK G + A+ V M + G VP+ + LL + +VD+ +
Sbjct: 112 IIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAW 161
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVAR-LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
EI M PN T++S+ L A E K + + P + +Y + G
Sbjct: 669 EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDG 728
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
CK G D+AYE M +G +P+ S L+ DA ++D E+
Sbjct: 729 LCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELF 777
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ E+ + M+ D P+ + +V PE+A L+++M+S G P LR+Y
Sbjct: 874 EQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIM 933
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ G K A + M + P+ S+L+ A KVD +++L
Sbjct: 934 ISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR 986
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ + ++M+ P+ T+T++ + A +++ M + G P +Y
Sbjct: 629 LREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSS 688
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G CK G +A M VV P SAL+ A ++D+ YE L R+
Sbjct: 689 IVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRA 748
Query: 290 VRQVSESTFKII 301
R TF I+
Sbjct: 749 GRIPDVVTFSIL 760
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGD-RENDSNL 169
+D SK G++ A +D G++ + Y+ L+ CK G G R+ +S
Sbjct: 218 VDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGL-CKAGKLDIALGLLRDKNSQA 276
Query: 170 GL-------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
G+ R E Q + PN F S+ + AF+L M
Sbjct: 277 GMFAFSSLLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVM 336
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYE-VDAHMGESGVVPEEPELSALLKLSVDAKK 275
K G + +Y L G CKL +AY V+ G P S L++ +A +
Sbjct: 337 KESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGR 396
Query: 276 VDKVYEILHRL 286
V++ +E+ R+
Sbjct: 397 VNQAWEVYERM 407
>gi|168052832|ref|XP_001778843.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669712|gb|EDQ56293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 953
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 19/173 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C K+G + + L D+ + + LS +N + RE
Sbjct: 469 IDFCCKQGKISQGLDFLDEMQVRNLELSSFSFNPFI----------------REFGRWTM 512
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+ M+ V P T+ S+ V D E A L +MK G+ Y P
Sbjct: 513 IDEAFEMKAAMLRLGVQPTVVTYNSLISACVKIGDLERACSLFPEMKELGVEANTHCYNP 572
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL---KLSVDAKKVDKVY 280
+ GF G D+A V M +GV P+ L+ LS D K D+++
Sbjct: 573 LIQGFAMQGRFDRALAVMRSMDAAGVKPDVNTYRLLIFACSLSKDQDKADQLF 625
>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 418
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N+
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDANV------ 227
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 228 -LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G V A+ +Y S ++ YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ ++ +MI + P++ T+T++ + D E AF+ K+M I
Sbjct: 292 ---------LKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+Y + G C+ G + A ++ M G+ PE
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 26/180 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG----DRENDSNLGLKR 173
GD+ E RL ++G+ + Y+VL+ NG + +D+N
Sbjct: 172 GDLDEGFRLKSAMLASGVQPDVYTYSVLI-------------NGLCKESKMDDAN----- 213
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++
Sbjct: 214 --ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 271
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK G+ +A+ + M + P++ + L+ +D +E HR R + +
Sbjct: 272 GLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFE--HRKRMIQENI 329
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A L+ +M + P +Y +
Sbjct: 247 AMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLID 306
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + +E +AL+ SVDA+K+
Sbjct: 307 GCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 355
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ + + Y L+ C CK G L F
Sbjct: 275 KKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGC-CKEGD---------------LDSAF 318
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + +E +T++ + A ++++M + G+ P R+Y + F
Sbjct: 319 EHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEF 378
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 379 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 410
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + ND+N
Sbjct: 183 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGL-CK---ES-----KMNDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +MI + + PN TFT++ ++A + K+M G P L +Y ++G
Sbjct: 227 ELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ +A ++ M G+ P++ + L+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318
>gi|196012058|ref|XP_002115892.1| hypothetical protein TRIADDRAFT_59776 [Trichoplax adhaerens]
gi|190581668|gb|EDV21744.1| hypothetical protein TRIADDRAFT_59776 [Trichoplax adhaerens]
Length = 509
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 76/393 (19%), Positives = 144/393 (36%), Gaps = 51/393 (12%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ E+ Q I V + TF S L + + K+++ + +Y
Sbjct: 104 INEAIELMDQSINQSVTLDIGTFNSYLYLVIRYNLFDKMIQCEKKIRLQNVAFDATTYST 163
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
G+ K+ N A + M G+ + S L+ + + V+++L+ ++
Sbjct: 164 LASGYSKMNNWVTALNLLREMQSKGIYGKARNYSPLISAAALDNQHQLVFDLLNEIKN-- 221
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERT 350
+ + +D + I+ H + W + T
Sbjct: 222 ---PDKLYLFPDD------------------NIYCDIIEMCARSHP-----TSNWEIRHT 255
Query: 351 QIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDA 410
I +G C SC +L I++ E +S E+ F+++ G +
Sbjct: 256 AITHSGYCKSCKAQLESIELTSDRQERLREVISQSISSGEI------FKKYKGDSNAIMS 309
Query: 411 VIDGA-NVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVI----LHKGRVSGGPA---- 461
G G +Q Y + + + + P++++ +VI + GR S P
Sbjct: 310 DYSGKIAYGSPDQKVLVKYSQDPFKDFCQWLHPTRKVDIVIDGLNIAHGRNSFDPLKESN 369
Query: 462 QIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDEMRDHL--FQ 515
+ K K ++D ++ P +DD Y+LYA V N K L+++D+ RD F
Sbjct: 370 KSTKYKAMIDSIFSSCRVFLCPNNHSDDVYFLYAAVHGGMNVK--LISDDQFRDFKKGFS 427
Query: 516 LLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPY 548
L F +W HQ+R+ R G L++ Y
Sbjct: 428 LTLLKDFLQWLRGHQVRVERFRKGKKLILTAKY 460
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 21/213 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + +A++ Y D R G+ +++ Y L+ +CK G+ S +G
Sbjct: 242 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA-NCKIGNLSDAFRLGNEMLQVG 300
Query: 171 --------------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
+K E+F +M T V PN A++ ++ V ++ + A
Sbjct: 301 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 360
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L+ ++K GI P L YG ++G C L + A V M E G+ + L+
Sbjct: 361 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 420
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
+ + +L ++ L +V+ TF ++ D
Sbjct: 421 FKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 453
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 58/233 (24%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL------------------------- 145
+D K GDV A L+++ + G+ YN +
Sbjct: 137 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 196
Query: 146 ---------LYVCSCKCGS---------ESSENGDRENDSNLG------LKRGFEIFQQM 181
L C CK G E NG + N + K G + QQ
Sbjct: 197 EPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEG--MMQQA 254
Query: 182 ITDKVD-------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I VD PNE T+TS+ + AF L +M G+ + +Y + G
Sbjct: 255 IKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDG 314
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
C +A E+ M +GV+P +AL+ V AK +D+ E+L+ L+
Sbjct: 315 LCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 367
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 16/147 (10%)
Query: 142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
YN L+ C CK G L G E +++M + + PN +++++
Sbjct: 203 YNALIN-CFCKFGK---------------LPIGLEFYREMKGNGLKPNVVSYSTLVDAFC 246
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ + A M+ G+ P +Y + CK+GN A+ + M + GV
Sbjct: 247 KEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVV 306
Query: 262 ELSALLKLSVDAKKVDKVYEILHRLRT 288
+AL+ DA+++ + E+ ++ T
Sbjct: 307 TYTALIDGLCDAERMKEAEELFGKMDT 333
>gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Glycine max]
Length = 1071
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 18/173 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C++ G V +A Y RS + + +N L+ C+ ++G + R
Sbjct: 519 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACA--------QSG--------AVDR 562
Query: 174 GFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
F++ +M T +DP+ T ++ + E A ++ K ++ + I Y A
Sbjct: 563 AFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIA 622
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ + G+ + A V M + G++P+E LSAL+ ++ AKK+D +++L
Sbjct: 623 INSCSQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQ 675
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 111 LDMCSKRGDVFEA---LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS 167
++C KR V EA +RL + LS +N+L+ VC+ SE +
Sbjct: 415 FNICKKRKAVKEAFDFIRLIPNP-----MLST--FNMLMSVCASSQDSEGA--------- 458
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
F++ Q + +++P+ +T++ ++ F++ +M + G+ P + +
Sbjct: 459 -------FQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHT 511
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
YG + G + G KA+ M V P+ +AL+ + VD+ +++L +
Sbjct: 512 YGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEM 570
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 24/177 (13%)
Query: 111 LDMCSKRGD---VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS 167
+ +C+ D F+ L+L DAR + Y L+ C+ K G
Sbjct: 446 MSVCASSQDSEGAFQVLQLLKDAR---LEPDCKLYTTLILTCA-KSGK------------ 489
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
+ FE+F +M+ V+PN T+ ++ AF M+S + P
Sbjct: 490 ---VDLMFEVFHKMVNSGVEPNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVV 546
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVDKVYEI 282
+ + + G D+A++V A M + P+ + ALLK A +V++ E+
Sbjct: 547 FNALIAACAQSGAVDRAFDVLAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEV 603
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 85/207 (41%), Gaps = 21/207 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L C+K G V A +Y + I Y + + CS + GD E
Sbjct: 588 LKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSCS--------QTGDWEYART-- 637
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ M + P+E +++ +A + + AFD++++ GI + SY
Sbjct: 638 ------VYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGIMSYS- 690
Query: 231 ALFGFCKLG-NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+L G C N KA E+ ++ + ++ALL D + K E+L ++ L
Sbjct: 691 SLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFEMKGL 750
Query: 290 VRQVSESTFKII---EDWFDSVDAAEI 313
+ TF I+ + D ++AA++
Sbjct: 751 GLSPNSITFSILIVASEKKDDMEAAQM 777
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 21/226 (9%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL-------------LYV 148
P+ +L + + + S G V EA++++ + G + YN L + +
Sbjct: 128 PDSILLNAMINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIVGRPYESMKL 187
Query: 149 CSCKCGSESSENGDREND-------SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
E+ + DR + + L+ + + +M+ + P+ T+ ++AR
Sbjct: 188 LEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYA 247
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ E A L+ +M+ + P R+ G + G+CK GN +A M E GV P
Sbjct: 248 QNGETEKAERLILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPV 307
Query: 262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDS 307
++L+K +DA + V E L + + TF I + + S
Sbjct: 308 VFNSLIKGYLDATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSS 353
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M+ ++P+ ++ +A+ V P A L+ M +G+ + + + G+
Sbjct: 362 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGW 421
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL--RTLVRQV 293
C G D+A+ + M E G P L+ +AK+ K EIL + R +V ++
Sbjct: 422 CAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPEM 481
Query: 294 SESTFKIIEDWFDSV 308
ST +++ D + ++
Sbjct: 482 --STMQLVADAWRAI 494
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 17/194 (8%)
Query: 94 SKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
S+ R P+GV+ + L D SK+GD+ EA RL+++ G + YN LL
Sbjct: 146 SRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL------ 199
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
S S G+ R +F+ M+ PN TF ++ D A L
Sbjct: 200 --SGFSRKGE--------FGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
+M+S G PP + SY + G C G +A + M SGV P+ + L+
Sbjct: 250 FLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309
Query: 273 AKKVDKVYEILHRL 286
+ +D ++ + +
Sbjct: 310 SGALDHAIKLFYEI 323
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 19/195 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN-DSNL 169
LD K GD+ EA RL+ + RS G YN L+ K ++ RE S +
Sbjct: 234 LDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGV 293
Query: 170 G------------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
G L ++F ++ ++P+ +++++ AF
Sbjct: 294 GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFV 353
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
+ K M + G P P + G C+ ++ E+ M + VP PE + L+
Sbjct: 354 VFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLC 413
Query: 272 DAKKVDKVYEILHRL 286
AK+ D V EI H L
Sbjct: 414 KAKRSDDVCEIFHEL 428
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +MI PN T+ S+ + A DL +M G PP Y + GF
Sbjct: 108 ELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF 167
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K G+ +AY + M E G +P ++LL
Sbjct: 168 SKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199
>gi|294945390|ref|XP_002784656.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239897841|gb|EER16452.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 692
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R F+I+Q+M ++K+ N +F ++ E D+ ++M GI P + +Y
Sbjct: 376 VDRVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYST 435
Query: 231 ALFGFCKLGNTDKAYEVDAHM-------GESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+C G+ D A+ V M G P+E ++LL +VD+ ++L
Sbjct: 436 VVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLL 495
Query: 284 HRLRTLVRQVSESTFKII 301
+R S T I+
Sbjct: 496 DEMRANGVAPSNYTLSIL 513
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
+Y + RSN I L+ +N ++ C+ + GS ++R +IF++M
Sbjct: 382 IYQEMRSNKIPLNTVSFNTIMDACA-RSGS---------------MERVSDIFREMDEQG 425
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-------IPPKLRSYGPALFGFCKL 238
++P+ T+++V + D + AF +++ M P Y L G K
Sbjct: 426 IEPDIITYSTVVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQ 485
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
D+A ++ M +GV P LS L+KL A+++ + + ++ L T
Sbjct: 486 HRVDQALQLLDEMRANGVAPSNYTLSILVKLLGRARRLLEAFNMVEDLST 535
>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 924
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+++ +K G + +AL + S GI + Y++L+ NG L
Sbjct: 488 INLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLI-------------NG------FLK 528
Query: 171 LK---RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
LK F IF+ ++ D + P+ + ++ R + A +VK+M+ P R+
Sbjct: 529 LKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRT 588
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ P + GF + G +A +V M SG +P +AL+ V+ ++++K EIL +
Sbjct: 589 FMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMA 648
Query: 288 TLVRQVSESTFKII 301
+E T+ I
Sbjct: 649 LAGVSPNEHTYTTI 662
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 12/164 (7%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR ++F M P TF ++ V K E A +++ +M G+ P +Y
Sbjct: 602 MKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTT 661
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ LG+T KA+E + + G+ + ALLK + ++ + +
Sbjct: 662 IMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMS--A 719
Query: 291 RQVSESTFK---IIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG 331
+ + +TF +I+ W D W+ + + + + +GG
Sbjct: 720 QNIPRNTFVYNILIDGWARRGDV-------WEAADLMQQMKQGG 756
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 22/153 (14%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + G+ H Y + C CK G
Sbjct: 733 IDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINAC-CKAGD--------------- 776
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R ++ ++M T V PN T+T++ PE A ++MK G+ P Y
Sbjct: 777 MLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHC 836
Query: 231 ALFGFCKLGNTDKAY------EVDAHMGESGVV 257
+ +AY + M ESG++
Sbjct: 837 LMTALLSRATVTEAYVRPGILSICKEMIESGLI 869
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/183 (21%), Positives = 70/183 (38%), Gaps = 21/183 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR---- 173
GD +A + R G+ L + Y LL C CK G S + S + R
Sbjct: 670 GDTGKAFEYFTKLRDEGLQLDVYTYEALLKAC-CKSGRMQSALAVTKEMSAQNIPRNTFV 728
Query: 174 ----------------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++ QQM V P+ T+TS D A ++++M+
Sbjct: 729 YNILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEME 788
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+ P +++Y + G+ + +KA M +G+ P++ L+ + V
Sbjct: 789 TSGVKPNVKTYTTLIHGWARASLPEKALRCFQEMKLAGLKPDKAVYHCLMTALLSRATVT 848
Query: 278 KVY 280
+ Y
Sbjct: 849 EAY 851
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + F+ M ++P +TS+ D E A ++MK G+ L +Y
Sbjct: 322 MHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEGVEMSLVTYSI 381
Query: 231 ALFGFCKLGNTDKA 244
+ GF K+GN D A
Sbjct: 382 IVGGFAKIGNADAA 395
>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
Length = 1351
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + G VFEAL ++D+ + GI Q+ YN L+ DR D+
Sbjct: 421 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLI---------SGFLKADRFGDA--- 468
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F+ M PN T + A + MKS GI P + +
Sbjct: 469 ----LELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNA 524
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
LFG K G A V + GV P+ + ++K A K D+ +I + +
Sbjct: 525 VLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDM 580
>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
cujabensis]
Length = 409
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G + Y+VL+ CK ES +G E
Sbjct: 185 RLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGL-CK---ESKMDGANE----------- 229
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 230 -LFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 288
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D + HR R + +
Sbjct: 289 CKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFX--HRKRMIQENI 344
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 262 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLID 321
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+ M + + ++ +AL+ SVDA+K+
Sbjct: 322 GCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 370
>gi|302799808|ref|XP_002981662.1| hypothetical protein SELMODRAFT_115078 [Selaginella moellendorffii]
gi|300150494|gb|EFJ17144.1| hypothetical protein SELMODRAFT_115078 [Selaginella moellendorffii]
Length = 585
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 82/177 (46%), Gaps = 17/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G++ +A +Y S I + +N L+ C + G+
Sbjct: 141 IDGCARTGELAKAFGIYRIMLSKKIKPDRVIFNSLINACG-RSGA--------------- 184
Query: 171 LKRGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+KR FE+F ++ ++ ++PN T S+ D + A+++ M+ GI Y
Sbjct: 185 VKRAFEVFTELKSESLINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRKRGIGGCPEPYT 244
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
A+ GN ++A+ + M + GV +E SAL+ ++ A K++ +++L +
Sbjct: 245 AAVHACSSSGNLERAFSIYDDMKKDGVKADEIFFSALIDVAGHAGKINCAFDVLQEV 301
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 16/155 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
CS G++ A +YDD + +G+ + ++ L+ V + G +
Sbjct: 250 CSSSGNLERAFSIYDDMKKDGVKADEIFFSALIDV--------AGHAGK--------INC 293
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F++ Q++ + P F+S+ + + E A L + +++ GI P + + +
Sbjct: 294 AFDVLQEVEKYSLVPGPVIFSSLMGVCSNVRNWEKAIFLYENIQAVGIRPSVSTLNALMT 353
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
C+ A + + E+GV P + S LL+
Sbjct: 354 ALCRGKQFQNALQSLEELKEAGVSPNQLTYSILLE 388
>gi|255569207|ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535151|gb|EEF36831.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 687
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 85/191 (44%), Gaps = 21/191 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL---- 171
K GD+ +A + + GIT S Y +L+ C CK G + + GL
Sbjct: 403 KVGDINKAFQYLGEMLKFGITPSVTTYTLLINAC-CKSGDMAMAEYLLQRMMLEGLIPDV 461
Query: 172 ----------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
++ FE+ M + + P+ T+ ++ +A+ P A D++ +
Sbjct: 462 VTFNCLIDGFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHE 521
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
+ G+ P + ++ + GF K GN ++A+ V ++M E V P+ SALL A++
Sbjct: 522 LIRRGLSPDVMTFTDVIDGFSKKGNFEEAFLVWSYMSERHVKPDVVTCSALLNGYCRARR 581
Query: 276 VDKVYEILHRL 286
+D+ + ++
Sbjct: 582 MDEANALFLKM 592
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 83/205 (40%), Gaps = 20/205 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKR 173
K G++ EA + + + G+ Y +++ Y CK G + +
Sbjct: 368 KDGNMLEASKTFQEMSEFGLYPDCFCYTIIIGGY---CKVGD---------------INK 409
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F+ +M+ + P+ T+T + D MA L+++M G+ P + ++ +
Sbjct: 410 AFQYLGEMLKFGITPSVTTYTLLINACCKSGDMAMAEYLLQRMMLEGLIPDVVTFNCLID 469
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
GF K G KA+E+ M +G+ P+ +AL+ + ++ +ILH L
Sbjct: 470 GFGKKGYLQKAFELLDIMRSAGMSPDTVTYNALIHSLIARGYPNEAKDILHELIRRGLSP 529
Query: 294 SESTFKIIEDWFDSVDAAEIGVLNW 318
TF + D F E L W
Sbjct: 530 DVMTFTDVIDGFSKKGNFEEAFLVW 554
>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
Length = 938
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EA++L ++ + G+T + HY L+ S G+ +N
Sbjct: 524 MDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLI--------SGYCLKGEMQNAQ--- 572
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++F++M+ ++P+ T+ +A FDL+ +M G+ P +YG
Sbjct: 573 -----QVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGI 627
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
A+ GFC+ GN +A + + E G+ E S+++ + + D Y + R+
Sbjct: 628 AIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRV 683
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA +L+ + GI Y VLL + + E +E S L
Sbjct: 774 KAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHN 833
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ M +++P+ +T + E A +L +M G+ P +Y + G+
Sbjct: 834 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 893
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
C G KA ++ M + G+ P+E S L + S+ ++K+
Sbjct: 894 CSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 934
>gi|19071826|dbj|BAB85657.1| PnC401 homologue [Arabidopsis thaliana]
Length = 831
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR EI+ M+ +DP+ F+ +A+ +PE A ++ QM+ FG+ P + Y
Sbjct: 617 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFGVRPNVVIYTQ 676
Query: 231 ALFGFCKLGNTDKAYEVDAHM-GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C G KA +V M G G+ P L+ +AK+ K E+L +
Sbjct: 677 IISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGK 736
Query: 290 VRQVSESTFKIIEDWFDSVDAA 311
+ T ++I D + S+ +
Sbjct: 737 NVVPTRKTMQLIADGWKSIGVS 758
Score = 45.4 bits (106), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +M V PN F S+ + + D + ++V M+ FG+ P + ++
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL- 289
+ + +G+ + E+ M E G+ P+ S L K A + +K +IL+++R
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAKQILNQMRKFG 666
Query: 290 VRQVSESTFKIIEDW 304
VR +II W
Sbjct: 667 VRPNVVIYTQIISGW 681
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +M+ +KV PN T ++ + E A +MK G+ P L + + GF
Sbjct: 518 IIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFL 577
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKL--SV-DAKKVDKVY 280
+ + D EV M E GV P+ S L+ SV D K+ +++Y
Sbjct: 578 NINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 624
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYG 229
++ + I +M + V P+ TF ++A+ A D++ +M + P +R+ G
Sbjct: 476 IEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C+ G ++A M E GV P ++L+K ++ +D V E++ +
Sbjct: 536 TIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEF 595
Query: 290 VRQVSESTFKIIEDWFDSV 308
+ TF + + + SV
Sbjct: 596 GVKPDVVTFSTLMNAWSSV 614
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 167 SNLGLKR---GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
SNL KR + F + D+ +P+ +T++ R + A + K+MK GI P
Sbjct: 229 SNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEP 288
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ +Y + C+ G +A++V A M +SG P + L+++ V A + +KV ++
Sbjct: 289 NVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVY 348
Query: 284 HRLRTL 289
++++ L
Sbjct: 349 NQMKKL 354
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA +++ + + GI + + Y++++ C+CG + R
Sbjct: 267 RAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDAL-CRCGQ---------------ISRAH 310
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F M+ PN TF ++ R+ V E + QMK G P +Y +
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAH 370
Query: 236 CKLGNTDKAYEV 247
C+ N + A +V
Sbjct: 371 CRDENLENAVKV 382
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++ +M+ K +PN T+ + R+ V + +M + K+M + P + +Y + FC
Sbjct: 417 MYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFC 476
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELS 264
+G+ + AY++ M E + P LS
Sbjct: 477 GMGHWNNAYKLFKEMVEEKCLT--PSLS 502
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 20/179 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++G V EA D+ S G + YN ++ C+ G+
Sbjct: 479 IDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIK-GYCRSGN--------------- 522
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+G + Q+M+ D + P+ TF ++ + +E+ AF++ M+ + P +Y
Sbjct: 523 VKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNM 582
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY----EILHR 285
+ GF + GN ++A V MG SG+ P+ +L+ V A + + E++HR
Sbjct: 583 IINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHR 641
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ M + P TF SV + + A ++ + M + P +RS+ + GFC
Sbjct: 214 LVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFC 273
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
++G ++A + M + GV P+ S L+ L K+D L ++ L
Sbjct: 274 RVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGL 326
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 60/135 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + E++ M ++ PN T++ + K E AF + +M S G P + +Y
Sbjct: 453 LAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNS 512
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C+ GN K + M + ++P+ + L+ + + + + + + + +
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM 572
Query: 291 RQVSESTFKIIEDWF 305
Q T+ +I + F
Sbjct: 573 VQPDAVTYNMIINGF 587
>gi|145341746|ref|XP_001415964.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
CCE9901]
gi|144576187|gb|ABO94256.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
CCE9901]
Length = 632
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 117 RGDVF-EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ ++F +ALR+ DD R G+ +S Y LL + ++ G R+ L R
Sbjct: 138 KAEMFKDALRIKDDMRYVGLPVSSKLYVTLLRALA------DNDMGKRKGPQER-LIRTC 190
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F++M+ + VDP A + ++ A ++A ++ GI P ++Y AL
Sbjct: 191 RLFEEMLNEDVDPAPAAYHTLIVAAHRANQHDLAVRTFDELIEEGITPARQTYETALDSM 250
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA--KKVDKVYEILHRLRT 288
+ G +A EV M +G++P + + LL V+A +V+ +EI ++T
Sbjct: 251 ARSGLLAQALEVFVQMKSNGLMPRKVTYNTLLSACVNAPQPRVEAAFEIFEEMQT 305
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 103 PEGVLRHKLDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P H L + + R + + A+R +D+ GIT ++ Y L
Sbjct: 203 PAPAAYHTLIVAAHRANQHDLAVRTFDELIEEGITPARQTYETAL--------------- 247
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSF 219
D S L L + E+F QM ++ + P + T+ ++ V P E AF++ ++M++
Sbjct: 248 DSMARSGL-LAQALEVFVQMKSNGLMPRKVTYNTLLSACVNAPQPRVEAAFEIFEEMQTK 306
Query: 220 G-IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
G + P +Y + CK G + A++ +HM +SG+
Sbjct: 307 GNVTPDRSTYSLLIDAACKAGKPEMAFDAFSHMRDSGI 344
>gi|449467169|ref|XP_004151297.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
gi|449518833|ref|XP_004166440.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Cucumis sativus]
Length = 609
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M+ ++P+ F+ +A+ V +P A L+ M +G+ P + + + G+
Sbjct: 359 EIFDDMLKSGIEPDIHVFSILAKGFVRAGEPVKAESLLNFMSKYGVRPNVVIFTTIISGW 418
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G +KA++V HM + V P L+ +AK+ + EIL + +
Sbjct: 419 CTAGKMEKAWKVFEHMCDMDVSPNLKTFETLIWGYGEAKQPWRAEEILQMMEEMNVVPEN 478
Query: 296 STFKIIEDWFDSV 308
ST K++ + + S+
Sbjct: 479 STLKLVSEAWRSI 491
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 50/107 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I M+ KV+PNE T + + + A +V +M+ GI P L + + GF
Sbjct: 255 IIVDMLNKKVNPNERTCGIIVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFL 314
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+G++D + M ESGV P+ S ++ A ++DK EI
Sbjct: 315 DIGDSDGVDKALTMMEESGVKPDVITFSTIMNGWSSAGRMDKCQEIF 361
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K + + QM+ V P+ T+ ++AR + A ++ M + + P R+ G
Sbjct: 214 IKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESIIVDMLNKKVNPNERTCGI 273
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+C+ GN +A V M + G+ P ++L+K +D D V + L
Sbjct: 274 IVGGYCEQGNLAEALRVVYRMRDLGIHPNLVIFNSLIKGFLDIGDSDGVDKAL 326
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYG 229
+K EIFQ+M P +TF ++ + PE + L++ M ++ + P R+Y
Sbjct: 143 VKEAMEIFQKMEESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYN 202
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ CK + +A+ V M SGV P+ + L + + +K I+
Sbjct: 203 ILVGALCKKKSIKEAWNVVHQMLASGVQPDVVTYNTLARAYAQDGETNKAESII 256
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 10/170 (5%)
Query: 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE-----IFQQMITDKVDPNEAT 192
SQ LL + + CG+ S R N+ ++RG IF ++ P T
Sbjct: 39 SQIQSRCLLCLGNNSCGTVRS----RTKLMNILVERGKPQEAQFIFNSLVEQGHRPTTVT 94
Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
+T++ ++ + L+ +M+ GI P + F + GN +A E+ M
Sbjct: 95 YTALVAALTRQKRFKAISGLLSEMEETGIKPDSILLNAIINAFSESGNVKEAMEIFQKME 154
Query: 253 ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL-RTLVRQVSESTFKII 301
ESG P + L+K +K ++ ++L + RT + + T+ I+
Sbjct: 155 ESGCKPTTSTFNTLIKGYGIIRKPEESMKLLELMTRTTNLKPNNRTYNIL 204
>gi|42570531|ref|NP_850859.2| SNF1-like protein kinase [Arabidopsis thaliana]
gi|75160582|sp|Q8S9D1.1|PP395_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g21222; AltName: Full=SNF1-like protein kinase AtC401
gi|19071860|dbj|BAB85674.1| SNF1-like protein kinase [Arabidopsis thaliana]
gi|332005563|gb|AED92946.1| SNF1-like protein kinase [Arabidopsis thaliana]
Length = 831
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR EI+ M+ +DP+ F+ +A+ +PE A ++ QM+ FG+ P + Y
Sbjct: 617 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQ 676
Query: 231 ALFGFCKLGNTDKAYEVDAHM-GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C G KA +V M G G+ P L+ +AK+ K E+L +
Sbjct: 677 IISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGK 736
Query: 290 VRQVSESTFKIIEDWFDSV 308
+ T ++I D + S+
Sbjct: 737 NVVPTRKTMQLIADGWKSI 755
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +M V PN F S+ + + D + ++V M+ FG+ P + ++
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL- 289
+ + +G+ + E+ M E G+ P+ S L K A + +K +IL+++R
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666
Query: 290 VRQVSESTFKIIEDW 304
VR +II W
Sbjct: 667 VRPNVVIYTQIISGW 681
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +M+ +KV PN T ++ + E A +MK G+ P L + + GF
Sbjct: 518 IIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFL 577
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKL--SV-DAKKVDKVY 280
+ + D EV M E GV P+ S L+ SV D K+ +++Y
Sbjct: 578 NINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 624
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYG 229
++ + I +M + V P+ TF ++A+ A D++ +M + P +R+ G
Sbjct: 476 IEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C+ G ++A M E GV P ++L+K ++ +D V E++ +
Sbjct: 536 TIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEF 595
Query: 290 VRQVSESTFKIIEDWFDSV 308
+ TF + + + SV
Sbjct: 596 GVKPDVVTFSTLMNAWSSV 614
>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
Length = 564
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 19/206 (9%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP V+ L D C K GD+ A +D G+ +Q+ + VL+ N
Sbjct: 194 SPNVVIYTTLIDGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLI-------------N 240
Query: 161 GDRENDSNLGLKR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
G + GLK+ GF++F++M + + PN T+ + + AFDL +M+
Sbjct: 241 GLFKK----GLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGKICRAFDLFDEMRER 296
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
G+ + +Y + G C+ +A ++ M ++ V P + L+ D +DK
Sbjct: 297 GVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKA 356
Query: 280 YEILHRLRTLVRQVSESTFKIIEDWF 305
+L +L++ S T+ I+ + +
Sbjct: 357 SSLLDQLKSNGLSPSLVTYNILIEGY 382
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 19/172 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ +A L D +SNG++ S YN+L+ S+ G+ + ++L
Sbjct: 351 GNLDKASSLLDQLKSNGLSPSLVTYNILI--------EGYSKAGNWKGVADLA------- 395
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M + P++ T T + V ++ E AF + M+ FG+ P + YG + G C
Sbjct: 396 -REMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCM 454
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
GN ++ ++ MGE V P + + ++ K D Y L LR +
Sbjct: 455 KGNMKESSKLFRSMGEMHVEPSDVIYNTMIH---GYCKEDNSYRALRLLREM 503
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C + G++ ++ +L + G++ + Y L+ C CK NGD E R
Sbjct: 172 CCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGC-CK-------NGDIE--------R 215
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F +M + N+ TFT + K + FDL ++MK G+ P L +Y +
Sbjct: 216 ARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMN 275
Query: 234 GFCKLGNTDKAYEVDAHMGESGV 256
+C G +A+++ M E GV
Sbjct: 276 EYCGEGKICRAFDLFDEMRERGV 298
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ E RL ++G+ + Y+VL+ G D N E+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLIN------GLCKESKMDEAN----------EL 228
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M+ + + PN TFT++ ++A ++ KQ+ S G P L +Y +FG CK
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCK 288
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G+ +A ++ M + P++ + L+ S ++ +E R+
Sbjct: 289 KGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRM 337
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ +F ++ + D + F L M + G+ P + +Y + G CK D+A E+
Sbjct: 169 PSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANEL 228
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
M ++G+VP + L+ +VD EI +L
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQL 267
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178
D A +++D +G+ + YN LL CK G+ + R IF
Sbjct: 476 DFANAFSIFEDMIKSGLQPDRAIYN-LLVEAFCKMGN---------------MDRAIRIF 519
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
++M +++ P+ TF + D + AFD + M+ G P + +Y + G +
Sbjct: 520 ERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRK 579
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+KA V M +G+ P E + +++ + + K +E +++
Sbjct: 580 HQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 628
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ +A + + +G+ L + Y LL C CK G ++ +
Sbjct: 615 GDIGKAFEYFTKIKESGLKLDVYIYETLLRAC-CKSGR---------------MQSALAV 658
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M K+ N + + + D A DL+KQMK GIPP + ++ + CK
Sbjct: 659 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCK 718
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ +A V M + G+ P + L+K
Sbjct: 719 AGDMQRAENVIQEMADVGLKPNVKTFTTLIK 749
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL-------- 169
GD+ AL ++ +S GI ++ Y++L+ ++S++N +E + L
Sbjct: 300 GDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNGIIY 359
Query: 170 -----------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
+ R E+ ++M D +D + S+ +D + + +++K
Sbjct: 360 SNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKE 419
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
G P + SYG + + K+G KA + M G+
Sbjct: 420 CGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGI 457
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 59/134 (44%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K+ +F+++ P ++ + L V A + K+M+S GI ++Y
Sbjct: 408 KKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSML 467
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GF L + A+ + M +SG+ P+ + L++ +D+ I R++
Sbjct: 468 INGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERM 527
Query: 292 QVSESTFKIIEDWF 305
Q S TF+ I + F
Sbjct: 528 QPSNRTFRPIIEGF 541
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL ++G+ + Y+VL+ NG + +
Sbjct: 183 KLGDLDEGFRLKSAMHASGVQPDVYTYSVLI-------------NGLCKESK---MDEAH 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M+ + PN TFT++ ++A ++ KQM S G P +Y ++G
Sbjct: 227 KLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ S ++ +E R+
Sbjct: 287 CKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRM 337
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 45/99 (45%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ +F ++ + D + F L M + G+ P + +Y + G CK D+A+++
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKL 228
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
M + G+VP + L+ K+D EI ++
Sbjct: 229 FDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQM 267
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G + A+ +Y S G + YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
L + ++ +M + P++ T+T++ + + D E AF+ K+M I
Sbjct: 292 ---------LXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
SY + G CK G + A ++ M G+ P+
Sbjct: 343 RLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPD 380
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 82/194 (42%), Gaps = 17/194 (8%)
Query: 94 SKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
S+ R P+GV+ + L D SK+GD+ EA RL+++ G + YN LL
Sbjct: 146 SRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL------ 199
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
S S G+ R +F+ M+ PN TF ++ D A L
Sbjct: 200 --SGFSRKGE--------FGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRL 249
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
+M+S G PP + SY + G C G +A + M SGV P+ + L+
Sbjct: 250 FLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSK 309
Query: 273 AKKVDKVYEILHRL 286
+ +D ++ + +
Sbjct: 310 SGALDHAIKLFYEI 323
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 19/195 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN-DSNL 169
LD K GD+ EA RL+ + RS G YN L+ K ++ RE S +
Sbjct: 234 LDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGV 293
Query: 170 G------------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
G L ++F ++ ++P+ +++++ AF
Sbjct: 294 GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFV 353
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
+ K M + G P P + G C+ ++ E+ M + VP PE + L+
Sbjct: 354 VFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLC 413
Query: 272 DAKKVDKVYEILHRL 286
AK+ D V EI H L
Sbjct: 414 KAKRSDDVCEIFHEL 428
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 40/92 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +MI PN T+ S+ + A DL +M G PP Y + GF
Sbjct: 108 ELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF 167
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K G+ +AY + M E G +P ++LL
Sbjct: 168 SKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLL 199
>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 687
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 25/198 (12%)
Query: 100 RESP-EGV------LRHKLDMCSKRGDVFEALRLYDD--ARSNGITLSQHHYNVLLYVCS 150
RE P EGV + CSK G EA+ L A + GIT YN + CS
Sbjct: 134 REMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACS 193
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
NG R K ++ +QM+ V PN T+ S E A
Sbjct: 194 ---------NGGR-------WKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAM 237
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
DL++++ G PP R+Y P + K G +A ++ M + + + S+++
Sbjct: 238 DLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAAC 297
Query: 271 VDAKKVDKVYEILHRLRT 288
++ + ++L ++RT
Sbjct: 298 GRGRRWKEAMDLLEQMRT 315
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 16/179 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G EA+ L +N I Y+ ++ C G R
Sbjct: 259 IDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACG---------RGRR------- 302
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
K ++ +QM T V PN ++ S + + A DL+++M + G+ P + SY
Sbjct: 303 WKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNS 362
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
A G +A E+ M G+ P ++ L + +K ++L + T+
Sbjct: 363 ATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTV 421
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 16/167 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+ L + R+ G++ + YN + C+ GDR K ++ ++M
Sbjct: 305 EAMDLLEQMRTQGVSPNVISYNSAIDACA---------KGDR-------WKEALDLLREM 348
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
T + P ++ S A +L+K+M + GI P SY AL K G
Sbjct: 349 TTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQW 408
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+KA ++ M G P+ ++ + ++ + E+L + T
Sbjct: 409 EKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPT 455
>gi|29294052|gb|AAO73889.1| protein kinase family [Arabidopsis thaliana]
Length = 854
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR EI+ M+ +DP+ F+ +A+ +PE A ++ QM+ FG+ P + Y
Sbjct: 640 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQ 699
Query: 231 ALFGFCKLGNTDKAYEVDAHM-GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C G KA +V M G G+ P L+ +AK+ K E+L +
Sbjct: 700 IISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGK 759
Query: 290 VRQVSESTFKIIEDWFDSV 308
+ T ++I D + S+
Sbjct: 760 NVVPTRKTMQLIADGWKSI 778
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +M V PN F S+ + + D + ++V M+ FG+ P + ++
Sbjct: 570 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 629
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL- 289
+ + +G+ + E+ M E G+ P+ S L K A + +K +IL+++R
Sbjct: 630 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 689
Query: 290 VRQVSESTFKIIEDW 304
VR +II W
Sbjct: 690 VRPNVVIYTQIISGW 704
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +M+ +KV PN T ++ + E A +MK G+ P L + + GF
Sbjct: 541 IIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFL 600
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKL--SV-DAKKVDKVY 280
+ + D EV M E GV P+ S L+ SV D K+ +++Y
Sbjct: 601 NINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 647
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYG 229
++ + I +M + V P+ TF ++A+ A D++ +M + P +R+ G
Sbjct: 499 IEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCG 558
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C+ G ++A M E GV P ++L+K ++ +D V E++ +
Sbjct: 559 TIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEF 618
Query: 290 VRQVSESTFKIIEDWFDSV 308
+ TF + + + SV
Sbjct: 619 GVKPDVVTFSTLMNAWSSV 637
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 79/174 (45%), Gaps = 26/174 (14%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG----DRENDSNLGL 171
+ GD+ E RL ++G+ + Y+VL+ NG + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMHASGVHPDVYTYSVLI-------------NGLCKESKMDDAN--- 232
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++F +M+ + PN TFT++ ++A ++ KQM S + P L +Y
Sbjct: 233 ----KLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNAL 288
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++G CK G+ +A+++ M G+ P++ + L+ +D +E HR
Sbjct: 289 IYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFE--HR 340
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGC-CKEGD---------------LDTAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E + MI + + ++ +T++ + A ++++M S G+ P R+Y + F
Sbjct: 338 EHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F +F+ M+ + + P+ + ++ + + A VK+M+ P R++ P +
Sbjct: 539 AFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIN 598
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
GF K G+ ++ EV M G VP +AL+ V+ ++++K EIL +
Sbjct: 599 GFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSA 658
Query: 294 SESTFKIIEDWFDSV 308
+E T+ I + SV
Sbjct: 659 NEHTYTKIMQGYASV 673
Score = 45.8 bits (107), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + G+ H Y + C S+ GD
Sbjct: 737 IDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISAC--------SKAGD-------- 780
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + ++M V PN T+T++ + PE A ++MK+ G+ P Y
Sbjct: 781 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHC 840
Query: 231 ALFGFCKLGNTDKAY 245
L + +AY
Sbjct: 841 LLTSLLSRASIAEAY 855
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 22/199 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR---- 173
GD +A + ++ G+ + Y LL C CK G S + S + R
Sbjct: 674 GDTGKAFEYFTRLQNEGLEVDIFTYEALLKAC-CKSGRMQSALAVTKEMSARNIPRNSFV 732
Query: 174 ----------------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++ QQM + V P+ T+TS D A +++M+
Sbjct: 733 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 792
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+ P +++Y + G+ + +KA M G+ P++ LL + +
Sbjct: 793 ALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRASIA 852
Query: 278 KVYEILHRLRTLVRQVSES 296
+ Y I + T+ +++ E+
Sbjct: 853 EAY-IYSGVMTICKEMVEA 870
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G+ A +D+A+ TL+ Y ++Y C E +E RE + G+
Sbjct: 391 SKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEE-GIDAP 449
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I+ M+ +T VA D + + K++K G P + +YG +
Sbjct: 450 IAIYHTMMDG--------YTMVA-------DEKKGLIVFKRLKECGFTPTVVTYGCLINL 494
Query: 235 FCKLGNTDKAYEVDAHMGESGV 256
+ K+G KA EV M E GV
Sbjct: 495 YTKVGKISKALEVSRVMKEEGV 516
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E F++M + P +TS+ D E A V++MK GI L +Y
Sbjct: 326 MHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSV 385
Query: 231 ALFGFCKLGNTDKA 244
+ GF K GN + A
Sbjct: 386 IVGGFSKAGNAEAA 399
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R E+F M P TF ++ V K E A +++ +M G+ +Y
Sbjct: 606 MRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTK 665
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ +G+T KA+E + G+ + ALLK + ++ + +
Sbjct: 666 IMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMS--A 723
Query: 291 RQVSESTFK---IIEDWFDSVDAAEIGVLNWDVSKVREGI 327
R + ++F +I+ W D E L + K EG+
Sbjct: 724 RNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKK--EGV 761
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G +I M+ PN TF S+ + E AF L+ M S GI P YG
Sbjct: 545 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 604
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK G D A V M GV P S +L A++ ++ H +
Sbjct: 605 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 664
Query: 291 RQVSESTFKII 301
VS T+ ++
Sbjct: 665 TTVSIHTYGVV 675
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
IF M+T + PN+ F + + A + + M++ G+ P ++ + C
Sbjct: 410 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 469
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G D A HM + GV P E L++ + ++ K E++ +
Sbjct: 470 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM 519
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ V P S+ + ++ + A +V++M GI P L +Y + G C
Sbjct: 232 LFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLC 291
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K DKA V M E+G P ++L+
Sbjct: 292 KSKAMDKAERVLEQMVEAGTRPNSITYNSLI 322
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
P++ +V ++ G+ P SY ++GF K G DKA+ + M E GV+P+ ++
Sbjct: 192 PDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNS 250
Query: 266 LLKLSVDAKKVDKVYEILHRL 286
++K K++DK I+ ++
Sbjct: 251 IIKELCKMKEMDKAESIVQKM 271
>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
Length = 526
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EA++L ++ + G+T + HY L+ + G+ +N
Sbjct: 112 MDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLI--------NGYCLKGEMQNAQ--- 160
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++F++M+ ++P+ T+ +A FDL+ +M G+ P +YG
Sbjct: 161 -----QVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGI 215
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
A+ GFC+ GN +A + + E G+ E S+++
Sbjct: 216 AIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMV 252
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA +L+ + GI Y VLL + + E +E S L
Sbjct: 362 KAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHN 421
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ M +++P+ +T + E A +L +M G+ P +Y + G+
Sbjct: 422 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 481
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
C G KA ++ M + G+ P+E S L + S+ ++K+
Sbjct: 482 CSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 522
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 20/194 (10%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
VFE L+ ++A G+ YN L+ + +S+NGD LK ++ +
Sbjct: 578 VFEMLKEMEEA---GLKPDTITYNTLI--------AYASKNGD--------LKFAQKVMR 618
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPALFGFCKL 238
+MI V P AT+ +V + A ++ K MK+ +PP Y + CK
Sbjct: 619 KMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKN 678
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
A + M GV P +A+ K D K ++KV+E + R+ T
Sbjct: 679 NKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITM 738
Query: 299 KIIEDWFDSVDAAE 312
+I+ +W +V E
Sbjct: 739 EILTEWLSAVGEIE 752
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATF-TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
++ E+F +M+ P+ + T ++ + A + +F ++ ++K GI P Y
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASF-VLAELKKLGIRPDTVCYN 563
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFC+ + +E+ M E+G+ P+ + L+
Sbjct: 564 TLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 19/187 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+ +Y + G+ Q YN L+Y S K G R ++ + LK M
Sbjct: 282 EAIGVYKKMKEEGVEPDQITYNTLIYGLS-KSG--------RVEEARMYLK-------TM 325
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ +P+ AT+TS+ K + A L+++M++ G P +Y L G CK
Sbjct: 326 VDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLM 385
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL---RTLVRQVSESTF 298
DK E+ M SGV E + L++ V + KV + YE+ ++L + ST
Sbjct: 386 DKGMELYELMKSSGVKLETNGYATLVRSLVKSGKVAEAYEVFDYAVDSKSLTDASAYSTL 445
Query: 299 KIIEDWF 305
+ W
Sbjct: 446 ETTLKWL 452
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ +A + + +G+ L + Y LL C CK G ++ +
Sbjct: 617 GDIGKAFEYFTKIKESGLKLDVYIYETLLRAC-CKSGR---------------MQSALAV 660
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M K+ N + + + D A DL+KQMK GIPP + ++ + CK
Sbjct: 661 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCK 720
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ +A V M + G+ P + L+K
Sbjct: 721 AGDMQRAENVIQEMADVGLKPNVKTFTTLIK 751
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 18/215 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+++ K G V +AL + + S+GI + Y++L+ NG
Sbjct: 435 INLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLI-------------NGFIHLHD--- 478
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
F IF+ MI + P+ A + + + + A + ++MK + P R++ P
Sbjct: 479 FANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRP 538
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GF G+ +A + M SG P +AL+ + +V++ +L ++
Sbjct: 539 IIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAG 598
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVRE 325
+E T+ II + + + +IG +K++E
Sbjct: 599 IAPNEHTYTIIMRGYAA--SGDIGKAFEYFTKIKE 631
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K+ +F+++ P+ ++ + L V A + K+M+S GI ++Y
Sbjct: 410 KKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSML 469
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GF L + A+ + M +SG+ P+ + L++ +D+ I R++
Sbjct: 470 INGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERM 529
Query: 292 QVSESTFKIIEDWF 305
Q S TF+ I + F
Sbjct: 530 QPSNRTFRPIIEGF 543
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 57/156 (36%), Gaps = 16/156 (10%)
Query: 96 KKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155
KK R + R ++ + GD+ AL D R +G + YN L++ K
Sbjct: 525 KKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQV 584
Query: 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
E R + +M + PNE T+T + R A D AF+ +
Sbjct: 585 E----------------RAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTK 628
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251
+K G+ + Y L CK G A V M
Sbjct: 629 IKESGLKLDVYIYETLLRACCKSGRMQSALAVTREM 664
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 19/191 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G+ A L+ + GI NVL Y C +S + R +D++
Sbjct: 62 VDRLCKDGNHINAQNLFTEMHEKGI-----FPNVLTY----NCMIDSFCHSGRWSDAD-- 110
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + MI +++P+ TF+++ V + A ++ K+M + I P +Y
Sbjct: 111 -----QLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNS 165
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI---LHRLR 287
+ GFCK D A + M G P+ S L+ AK+VD EI +HR
Sbjct: 166 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 225
Query: 288 TLVRQVSESTF 298
+ V+ +T
Sbjct: 226 IVANTVTYTTL 236
>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
Length = 551
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 176 EIFQQMITD--KVDPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+F+ M T+ + A S+ +A+AK D E F+L+ M+S G P + +Y +
Sbjct: 307 ELFEFMRTEGSTISSPTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVSTYKELI 366
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G C +G D AY V MG +G P+ + L + +K D E+ R+ +
Sbjct: 367 EGMCLVGKLDAAYRVLEEMGRAGFPPDIVTYNCFLNVLCSLRKADDALELCERMIEAHCE 426
Query: 293 VSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQI 352
S T+ ++ F + A + W ++
Sbjct: 427 PSVHTYNMLMVMFFEMGEAHRALDIW-------------------------------LEM 455
Query: 353 DENGVCCSCNERLVCID--IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDA 410
D G + + + ID D +TE+ A+SL + R+++ + KF + R A
Sbjct: 456 DTRGCQRAIDTYEIMIDGLFDCGKTEH-ATSLLDEVINRDMKLSYKKFDAIMLR---LSA 511
Query: 411 VIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKR 445
V D + +++H FY N ++R ++ K+
Sbjct: 512 VGDLGAIHRLSEHMRRFY--NVAMSRRFAITQKKK 544
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC-SCKCGSESSENGDRENDSNLGLKRG 174
K G+ +AL +++ R G + YN ++ SC GDR R
Sbjct: 394 KNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC---------GDRS--------RA 436
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ MI+ VDP+E T+ S+ E A L+ M+ G P + SY L G
Sbjct: 437 LGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLG 496
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK+ D A + A M E G P E L++
Sbjct: 497 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIE 530
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 29/196 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG----------SESSENGDRENDS 167
G + EA++L ++ + G+ + YN ++ CK G S +S+ + S
Sbjct: 221 GGINEAMKLLEEMLARGLLPDMYTYNAIIR-GMCKEGMVERAAELITSLTSKGCKPDVIS 279
Query: 168 NLGLKRGF----------EIFQQMITDKVDPNEATFT----SVARLAVAKEDPEMAFDLV 213
L R F ++ +M + +PN+ T++ S+ R E A ++
Sbjct: 280 YNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDE----AISVL 335
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
K M + P SY P + CK G D A + +M +G +P+ + +L
Sbjct: 336 KVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKN 395
Query: 274 KKVDKVYEILHRLRTL 289
++ EI ++LR +
Sbjct: 396 GNANQALEIFNKLRGM 411
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 22/201 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+++ +K G V +AL + + GI + Y++L+ + L
Sbjct: 95 INLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLI-------------------NGFLK 135
Query: 171 LK---RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
LK F IF+ +I D + P+ + ++ + A VK+M+ P R+
Sbjct: 136 LKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRT 195
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ P + GF + G KA +V M SG +P +AL+ V+ +K++K +IL +
Sbjct: 196 FMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMT 255
Query: 288 TLVRQVSESTFKIIEDWFDSV 308
+E T+ I + S+
Sbjct: 256 LAGVSPNEHTYTTIMHGYASL 276
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 21/170 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD +A + R G+ L + Y LL C CK G S + S + R I
Sbjct: 277 GDTGKAFAYFTKLRDEGLQLDVYTYEALLKAC-CKSGRMQSALAVTKEMSAQNIPRNTFI 335
Query: 178 F--------------------QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+ QQM + V P+ T+TS D + A +++MK
Sbjct: 336 YNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMK 395
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
S G+ P +++Y + G+ + +KA M SG+ P+ L+
Sbjct: 396 SVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLM 445
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ ++F M P T+ ++ V K E A ++ +M G+ P +Y
Sbjct: 209 MKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTT 268
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ LG+T KA+ + + G+ + ALLK + ++ + +
Sbjct: 269 IMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMS--A 326
Query: 291 RQVSESTF---KIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
+ + +TF +I+ W D E L + REG+
Sbjct: 327 QNIPRNTFIYNILIDGWARRGDVWEAADLMQQMK--REGV 364
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + G+ H Y + C S+ GD
Sbjct: 340 IDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINAC--------SKAGD-------- 383
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
++R + ++M + V PN T+T++ PE A ++MK G+ P Y
Sbjct: 384 MQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVY 441
>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 418
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N+
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDANV------ 227
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 228 -LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G V A+ +Y S ++ YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ ++ +MI + P++ T+T++ + D E AF+ K+M I
Sbjct: 292 ---------LKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+Y + G C+ G + A ++ M G+ PE
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380
>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 418
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 83/171 (48%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + +++G+ + Y+VL+ CK ES + +D+N+
Sbjct: 183 KLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDANV------ 227
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 228 -LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G V A+ +Y S ++ YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ ++ +MI + P++ T+T++ + D E AF+ K+M I
Sbjct: 292 ---------LKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+Y + G C+ G + A ++ M G+ PE
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPE 380
>gi|115449175|ref|NP_001048367.1| Os02g0793200 [Oryza sativa Japonica Group]
gi|113537898|dbj|BAF10281.1| Os02g0793200 [Oryza sativa Japonica Group]
gi|215704904|dbj|BAG94932.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 473
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
GL+ G + +M V+P+ T+ S+ A + P A DL +M GI P SY
Sbjct: 73 GLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYN 132
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
P + + G+ + AY V A M E G+ P + + LL A Y + L+
Sbjct: 133 PLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRA 192
Query: 290 VRQVSESTFKII 301
VS T+ +
Sbjct: 193 GLPVSIVTYNTM 204
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 171 LKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK E+F++M++ D++ P+ T+ ++ + A +++ MK G P + +Y
Sbjct: 295 LKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYS 354
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GFCK G ++A EV M G+ P+ + L+ A +VD+ E+L +
Sbjct: 355 ALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXEN 414
Query: 290 VRQVSESTFKII 301
+ TF +I
Sbjct: 415 KCRADTVTFNVI 426
>gi|375493518|ref|NP_001243609.1| mitochondrial ribonuclease P protein 3 isoform 4 [Homo sapiens]
gi|375493520|ref|NP_001243610.1| mitochondrial ribonuclease P protein 3 isoform 4 [Homo sapiens]
gi|28071112|emb|CAD61937.1| unnamed protein product [Homo sapiens]
gi|119586286|gb|EAW65882.1| KIAA0391, isoform CRA_c [Homo sapiens]
Length = 211
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 393 SDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILH 452
+ +F+ ++ PFD VIDG NV + L VV++L + + L++L
Sbjct: 17 QELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQL----AKRNLRLLVLG 72
Query: 453 KGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDE 508
+ + +Q +++ ++ + + + S DD + LYAT+ +C+ +T D
Sbjct: 73 RKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR--FITRDL 128
Query: 509 MRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP 563
MRDH L F +W++ HQ+ + G L Y V+Q + SWH+P
Sbjct: 129 MRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIP 187
Query: 564 ----VITGDDLEAPRQWLC 578
++ E P +WLC
Sbjct: 188 YDEDLVERCSCEVPTKWLC 206
>gi|426376683|ref|XP_004055123.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 4
[Gorilla gorilla gorilla]
gi|426376685|ref|XP_004055124.1| PREDICTED: mitochondrial ribonuclease P protein 3 isoform 5
[Gorilla gorilla gorilla]
Length = 211
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 393 SDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILH 452
+ +F+ ++ PFD VIDG NV + L VV++L + + L++L
Sbjct: 17 QELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQL----AKRNLRLLVLG 72
Query: 453 KGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDE 508
+ + +Q +++ ++ + + + S DD + LYAT+ +C+ +T D
Sbjct: 73 RKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR--FITRDL 128
Query: 509 MRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP 563
MRDH L F +W++ HQ+ + G L Y V+Q + SWH+P
Sbjct: 129 MRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQHILSYDTVVQ-TTGDSWHIP 187
Query: 564 ----VITGDDLEAPRQWLC 578
++ E P +WLC
Sbjct: 188 YDEDLVERCSYEVPTKWLC 206
>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
nagariensis]
Length = 961
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 19/185 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C + AL L + RS GI + H Y+ L+ VC + N+ +L
Sbjct: 283 ISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCI------------KANELDLA 330
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++++QM+ + PN T+ + + V + E A ++ ++ I ++R+Y
Sbjct: 331 Q----DVYKQMLEEGCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNT 386
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ K G ++A +V M +GV P +AL+ +V+K EI R ++
Sbjct: 387 VISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALEI---FRDMI 443
Query: 291 RQVSE 295
R+ E
Sbjct: 444 RRGCE 448
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C+K G +AL++Y+ + G+ S Y L+ S + G E
Sbjct: 388 ISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALI--------SAYGKKGQVE------ 433
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ EIF+ MI + N T++S+ EMA +L +M P + ++
Sbjct: 434 --KALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNS 491
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ G+ +KA E+ M G P+
Sbjct: 492 LIAACSHGGHWEKASELFEQMQTQGCKPD 520
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F F +M V PN T+ + + A +L+ +MK GI P S+
Sbjct: 511 LDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNA 570
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ FC++ +KA ++ M GV P+ +AL+K D ++VD+ EI+ + ++
Sbjct: 571 PILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMESI 629
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 112 DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL 171
D +RG V + L D RS G +S+ L+ E+ LGL
Sbjct: 118 DALLRRGPVVLSAALVADVRSCGCEVSEELLCALV-----------------ESWGRLGL 160
Query: 172 KR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F Q+ + P+ A + +V +V + A+ +QM + G P +Y
Sbjct: 161 AHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNT 220
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C+ G D+A + M +G+ P + L+ +A +V++ +L R++
Sbjct: 221 LVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKG 280
Query: 291 RQVSESTFK 299
+E+T++
Sbjct: 281 VSATEATYR 289
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
FQQM D P+ T+ ++ + + A LVKQM+ GI P + +Y + GFC
Sbjct: 203 FQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCN 262
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
++A V M E GV E +L+ + + ++ Y +L
Sbjct: 263 ASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRML 308
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + F QM++D + + ++ V + E A + +K M+ G P L ++
Sbjct: 406 ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNT 465
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ G+ KLGN A + E G++P+ ++L+ ++D +
Sbjct: 466 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAF 515
>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSV-ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK+ F + QM+T+ V PN T+ + L+ A+ E A LV QMK G+ P +Y
Sbjct: 592 LKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA-GLVNQMKERGLVPNATTYD 650
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G K+GN + ++ M G VP+ + L+ KK+ + E++ ++
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710
Query: 290 VRQVSESTFKI-IEDWF 305
+ ST+ I I W+
Sbjct: 711 GIPPNSSTYDILICGWY 727
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 111 LDMCSKRGDVFEAL-RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
+D C K G F+ + + +D+ + NG+ + +N LL VCS E++ N
Sbjct: 310 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARN--------- 360
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+F +M +++ + ++ ++ ++AF+++ QM I P + SY
Sbjct: 361 -------LFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYS 413
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GF K G D+A + M G+ + + LL + + ++ +IL + ++
Sbjct: 414 TVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASV 473
Score = 47.0 bits (110), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 19/193 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+ +++ + G+ + YN ++ C K G E K+ + F +M
Sbjct: 286 EAISVFNSMKEYGLRPNLVTYNAVIDACG-KGGME--------------FKQVAKFFDEM 330
Query: 182 ITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+ V P+ TF S+ LAV E A +L +M + I + SY L CK G
Sbjct: 331 QRNGVQPDRITFNSL--LAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGG 388
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
D A+E+ A M ++P S ++ A + D+ + +R L + ++
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYN 448
Query: 300 IIEDWFDSVDAAE 312
+ + V +E
Sbjct: 449 TLLSIYTKVGRSE 461
>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + A +++D+ G+ + YN+L+ C+ G S G +
Sbjct: 226 GKLSLAFKVFDEISKRGVACNAVTYNILIGGL-CRKGQVSKAEG---------------L 269
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M ++P TF + + A ++++K G+ P L +Y + GF K
Sbjct: 270 LERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
+GN+ E+ M + G+ P + + L+ V + ++K YE+ H ++ + + T
Sbjct: 330 VGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHT 389
Query: 298 FKII 301
+ ++
Sbjct: 390 YGVL 393
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 16/203 (7%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
++ C + GD+ +A ++ G+ +Q+ Y +++ NG +
Sbjct: 149 IEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMI-------------NGFFKKGYK-- 193
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
K GFE++Q+M V PN T+ S+ +AF + ++ G+ +Y
Sbjct: 194 -KDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNI 252
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C+ G KA + M + + P + L+ + ++DK L +L+ +
Sbjct: 253 LIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIG 312
Query: 291 RQVSESTFKIIEDWFDSVDAAEI 313
+ T+ I+ F V + +
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSV 335
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M + P++ T+T + V +D E A+++ MK G+ P +YG + G
Sbjct: 338 ELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEE 260
C GN +A ++ M E + P +
Sbjct: 398 CIKGNMVEASKLYKSMVEMHLQPND 422
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 16/188 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G+V + L + G++ + Y +L+ C C+ NGD + +
Sbjct: 119 ENGNVSKGFELLAQMETMGVSPNVFIYTILIEAC-CR-------NGD--------IDQAK 162
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M + N+ +T + K + F+L ++MK G+ P L +Y + +
Sbjct: 163 VMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEY 222
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C+ G A++V + + GV + L+ +V K +L R++ +
Sbjct: 223 CRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTT 282
Query: 296 STFKIIED 303
TF ++ D
Sbjct: 283 RTFNMLMD 290
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G E+ +MI P+EA +++ K + AFDLV ++K FG+ P L Y
Sbjct: 301 FEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNA 360
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ CK G D+A + +MG G+ P + S L+ K+D L ++
Sbjct: 361 LINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKM 416
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 88/213 (41%), Gaps = 24/213 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ A RLY + GI+ + + + L+ S C + +R ++N
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALI---SGLC------HANRMAEAN------- 515
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M+ V PNE T+ + + + AF+L+ +M G+ P +Y P + G
Sbjct: 516 KLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGL 575
Query: 236 CKLGNTDKAYE-VDAHMGES-------GVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
C G +A E ++ GE G +P +AL+ +DK + +
Sbjct: 576 CSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREML 635
Query: 288 TLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDV 320
+++T+ D+ S E + DV
Sbjct: 636 ASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDV 668
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D KRG + AL GI + + Y+ L+ CK G
Sbjct: 397 IDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLI-SGHCKLGK--------------- 440
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ +F +MI + + PN +TS+ + + AF L +M GI P ++
Sbjct: 441 LRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTA 500
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +A ++ M E V+P E + L++ + +E+L +
Sbjct: 501 LISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEM 556
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD + G++ +A++L+D G + YN+L+ CK G
Sbjct: 650 LDYLTSEGNIEKAIQLHD-VLLEGFLANTVTYNILIR-GFCKLGR--------------- 692
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ E+ MI + P+ +++++ + D + A L + M + G+ P +Y
Sbjct: 693 IQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNF 752
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
++G C G KA+E+ M GV P ++L+
Sbjct: 753 LIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 789
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 16/183 (8%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR 163
E + + +D K+G++ A L + + G+ S YN L+ CK G
Sbjct: 320 EAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALIN-SMCKDGK-------- 370
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
L +F M + PN+ T++ + + ++A + +M GI
Sbjct: 371 -------LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKA 423
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ Y + G CKLG A + M +G+ P ++L+ ++ + +
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLY 483
Query: 284 HRL 286
H +
Sbjct: 484 HEM 486
>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 418
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + + +G+ + Y+VL+ CK ES + +D+N+
Sbjct: 183 KLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGL-CK---ES-----KMDDANV------ 227
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 228 -LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G V A+ +Y S ++ YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ ++ +MI + P++ T+T++ + D E AF+ K+M I
Sbjct: 292 ---------LKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+Y + G C+ G + A ++ M G+ PE
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPE 380
>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSV-ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK+ F + QM+T+ V PN T+ + L+ A+ E A LV QMK G+ P +Y
Sbjct: 592 LKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA-GLVNQMKERGLVPNATTYD 650
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G K+GN + ++ M G VP+ + L+ KK+ + E++ ++
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710
Query: 290 VRQVSESTFKI-IEDWF 305
+ ST+ I I W+
Sbjct: 711 GIPPNSSTYDILICGWY 727
>gi|15226343|ref|NP_178283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216739|sp|Q9ZUA2.1|PP141_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g01740
gi|4220475|gb|AAD12698.1| hypothetical protein [Arabidopsis thaliana]
gi|330250397|gb|AEC05491.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GD+ A+ LY + R ++L+ Y L+ CK G
Sbjct: 205 IDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALID-GFCKKGE--------------- 248
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R E++ +M+ D+V+PN +T++ + D + A + +M + G+ + +YG
Sbjct: 249 MQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGV 308
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C G +A E+ M +S +VP+ + ++ + ++ + H+L
Sbjct: 309 IISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ + F M D + PN TFT + D E+A L K+M+ + + +Y
Sbjct: 179 LQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTA 238
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ GFCK G +A E+ + M E V P
Sbjct: 239 LIDGFCKKGEMQRAEEMYSRMVEDRVEP 266
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 22/201 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+++ +K G V +AL + + GI + Y++L+ + L
Sbjct: 493 INLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLI-------------------NGFLK 533
Query: 171 LK---RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
LK F IF+ +I D + P+ + ++ + A VK+M+ P R+
Sbjct: 534 LKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRT 593
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ P + GF + G KA +V M SG +P +AL+ V+ +K++K +IL +
Sbjct: 594 FMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMT 653
Query: 288 TLVRQVSESTFKIIEDWFDSV 308
+E T+ I + S+
Sbjct: 654 LAGVSPNEHTYTTIMHGYASL 674
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 21/170 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD +A + R G+ L + Y LL C CK G S + S + R I
Sbjct: 675 GDTGKAFTYFTKLRDEGLQLDVYTYEALLKAC-CKSGRMQSALAVTKEMSAQNIPRNTFI 733
Query: 178 F--------------------QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+ QQM + V P+ T+TS D + A +++MK
Sbjct: 734 YNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMK 793
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
S G+ P +++Y + G+ + +KA M SG+ P+ L+
Sbjct: 794 SVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLM 843
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E F++M ++P+ +T++ D E A V++MK GI L +Y
Sbjct: 327 MHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSI 386
Query: 231 ALFGFCKLGNTDKA 244
+ GF K GN + A
Sbjct: 387 LVSGFAKTGNAESA 400
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ ++F M P T+ ++ V K E A ++ +M G+ P +Y
Sbjct: 607 MKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTT 666
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ LG+T KA+ + + G+ + ALLK
Sbjct: 667 IMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLK 704
Score = 42.0 bits (97), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGD++EA L + G+ H Y + C S+ GD
Sbjct: 738 IDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINAC--------SKAGD-------- 781
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
++R + ++M + V PN T+T++ PE A ++MK G+ P Y
Sbjct: 782 MQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVY 839
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 20/195 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK--CGSESSENGDRENDSN 168
+D K G++ +A RL ++ G+ +NV+ Y C +E
Sbjct: 280 VDANCKIGNLSDAFRLANEMLEVGV-----EWNVVTYTALIDGLCDAER----------- 323
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+K ++F +M+T V PN A++ ++ V ++ + A +L+ ++K GI P L Y
Sbjct: 324 --MKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLY 381
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
G ++G C L + A V M E+G+ + L+ + + +L ++
Sbjct: 382 GTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQE 441
Query: 289 LVRQVSESTFKIIED 303
L +V+ TF ++ D
Sbjct: 442 LDHEVTVVTFCVLID 456
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + + + +++ +S YN L+ C CK G
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLIN-CFCKSGK--------------- 218
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYG 229
L +G E +++M + PN +++++ A KED + A M+ G P +Y
Sbjct: 219 LPKGLEFYREMKQSGLKPNVVSYSTLVD-AFCKEDMMQQAIKFYVDMRRVGHVPNEFTYT 277
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ CK+GN A+ + M E GV +AL+ DA+++ + ++ ++ T
Sbjct: 278 SLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVT 336
>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 605
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA RL D+ + + YN+L+ NG E S+L +GF
Sbjct: 165 KDGKIDEAFRLRDEMENLKLLPHVVTYNMLI-------------NGCFECSSSL---KGF 208
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M V PN T+ V + V + + A + +++M+ G P ++ G+
Sbjct: 209 ELIDEMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGY 268
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
CK G +A+ + M G+ L+ +L +K+D Y++L
Sbjct: 269 CKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLL 316
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 16/170 (9%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V+ + ++ D G+ ++ + +N+L +C C EN E +G + F F
Sbjct: 29 VYLSKAIFSDVIKLGVEVNTNTFNIL--ICGC-----CIENKLSEAIGLIGKMKHFSCF- 80
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
P+ ++ ++ + K A DL+ MK+ G+ P ++ + G+CKLG
Sbjct: 81 --------PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLG 132
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+A EV M + V+P+ + L+ K+D+ + + + L
Sbjct: 133 WLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENL 182
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 77/171 (45%), Gaps = 20/171 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA R+ D+ G+ ++ N +L+ CG ++ + S KRG+
Sbjct: 270 KAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTL---CGERKLDDAYKLLSS--ASKRGY 324
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ +E ++ ++ + K +D +MK I P + +YG + G
Sbjct: 325 FV-----------DEVSYGTLI-MGYFKVGKSXXWD---EMKEKEIIPSIITYGTMIGGL 369
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
C+ G TD++ + + ESG+VP++ + ++ +VDK + +++
Sbjct: 370 CRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREGQVDKAFHFRNKM 420
>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 257
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 19/191 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G+ A L+ + GI NVL Y C +S + R +D++
Sbjct: 17 VDRLCKDGNHINAQNLFTEMHEKGI-----FPNVLTY----NCMIDSFCHSGRWSDAD-- 65
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + MI +++P+ TF+++ V + A ++ K+M + I P +Y
Sbjct: 66 -----QLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEMLRWSIFPTTITYNS 120
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI---LHRLR 287
+ GFCK D A + M G P+ S L+ AK+VD EI +HR
Sbjct: 121 MIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRG 180
Query: 288 TLVRQVSESTF 298
+ V+ +T
Sbjct: 181 IVANTVTYTTL 191
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F F +M V PN T+ + + A +L+ +MK GI P S+
Sbjct: 511 LDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNA 570
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ FC++ +KA ++ M GV P+ +AL+K D ++VD+ EI+ + ++
Sbjct: 571 PILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMESI 629
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 112 DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL 171
D +RG V + L D RS G +S+ L+ E+ LGL
Sbjct: 118 DALLRRGPVVLSAALVADVRSCGCEVSEELLCALV-----------------ESWGRLGL 160
Query: 172 KR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E+F Q+ + P+ A + +V +V + A+ +QM + G P +Y
Sbjct: 161 AHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNT 220
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C+ G D+A + M +G+ P + L+ +A +V++ +L R++
Sbjct: 221 LVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEAVCVLERMKEKG 280
Query: 291 RQVSESTFK 299
+E+T++
Sbjct: 281 VSATEATYR 289
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
FQQM D P+ T+ ++ + + A LVKQM+ GI P + +Y + GFC
Sbjct: 203 FQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCN 262
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
++A V M E GV E +L+ + + ++ Y +L
Sbjct: 263 ASRVEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRML 308
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 50/110 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + F QM++D + + ++ V + E A + +K M+ G P L ++
Sbjct: 406 ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNT 465
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ G+ KLGN A + E G++P+ ++L+ ++D +
Sbjct: 466 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAF 515
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 18/154 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC-SCKCGSESSENGDRENDSNLGLKRG 174
K G+ +AL +++ R G + YN ++ SC GDR R
Sbjct: 404 KNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSC---------GDR--------SRA 446
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ MI+ +DP+E T+ S+ E A L+ M+ G P + SY L G
Sbjct: 447 LGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLG 506
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK+ D A + A M E G P E L++
Sbjct: 507 LCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIE 540
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 82/196 (41%), Gaps = 29/196 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG----------SESSENGDRENDS 167
G + EA++L ++ + G+ + YN ++ CK G S +S+ + + S
Sbjct: 231 GGINEAMKLLEEMLARGLLPDMYTYNAIIR-GMCKEGMVERAAELITSLTSKGCEPDVIS 289
Query: 168 NLGLKRGF----------EIFQQMITDKVDPNEATFT----SVARLAVAKEDPEMAFDLV 213
L R F ++ +M + +PN+ T++ S+ R E A ++
Sbjct: 290 YNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDE----AISVL 345
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
K M + P SY P + CK G D A + +M +G +P+ + +L
Sbjct: 346 KVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKN 405
Query: 274 KKVDKVYEILHRLRTL 289
++ EI ++LR +
Sbjct: 406 GNANQALEIFNKLRGM 421
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 55.5 bits (132), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G +I M+ PN TF S+ + E AF L+ M S GI P YG
Sbjct: 468 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 527
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK G D A V M GV P S +L A++ ++ H +
Sbjct: 528 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 587
Query: 291 RQVSESTFKII 301
VS T+ ++
Sbjct: 588 TTVSIHTYGVV 598
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
IF M+T + PN+ F + + A + + M++ G+ P ++ + C
Sbjct: 333 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 392
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G D A HM + GV P E L++ + ++ K E++ +
Sbjct: 393 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM 442
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ V P S+ + ++ + A +V++M GI P L +Y + G C
Sbjct: 156 LFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLC 215
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K DKA V M E+G P ++L+
Sbjct: 216 KSKAMDKAERVLEQMVEAGTRPNSITYNSLI 246
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
P++ +V ++ G+ P SY ++GF K G DKA+ + M E GV+P+ ++
Sbjct: 116 PDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNS 174
Query: 266 LLKLSVDAKKVDKVYEILHRL 286
++K K++DK I+ ++
Sbjct: 175 IIKELCKMKEMDKAESIVQKM 195
>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 607
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C + G EAL L++D R++G+ Y + C+ NG R
Sbjct: 180 ISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACA---------NGGR------- 223
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
K + +++ T + PN +++SV + ++A DL+++MK+ + P + +Y
Sbjct: 224 WKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNA 283
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
A+ K G +A ++ M G+ P+ S+++ + + +IL + T+
Sbjct: 284 AIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTV 342
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 16/179 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G A+ + + GI Y + C+ G R
Sbjct: 75 IDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACA---------RGGR------- 118
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
K ++ ++M+ V PN + S E+A LVK+M + G+ P + SY
Sbjct: 119 WKIALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSS 178
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
A+ + G ++A E+ M SGV P+ + + + + + +L ++ T+
Sbjct: 179 AISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTV 237
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 78/201 (38%), Gaps = 25/201 (12%)
Query: 65 TTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH------KLDMCSKRG 118
T GL A S S ++ A G ++K R GV + + C+K
Sbjct: 341 TVGLSPNAISYNSAID---ACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGE 397
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178
EAL L + + G+ + Y+ + C NL +K E+
Sbjct: 398 QWKEALALLREMPTVGLHTTVFSYSSAIDAC---------------GKGNLWIK-AKELL 441
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
++M T + PNE + S + E A DL+++M + G+ P + SY A+ K
Sbjct: 442 REMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKG 501
Query: 239 GNTDKAYEVDAHMGESGVVPE 259
+A V M +G+ P+
Sbjct: 502 DQWKEALAVLKEMSAAGLAPD 522
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 27/210 (12%)
Query: 65 TTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHK------LDMCSKRG 118
T GL T FS S ++ A G + K+K+ R + G+ ++ +D C RG
Sbjct: 411 TVGLHTTVFSYSSAID---ACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACG-RG 466
Query: 119 DVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
D +E A+ L + + G++ Y+ + C+ GD+ K +
Sbjct: 467 DQWEEAVDLLREMPTVGLSPDVFSYSSAIAACA---------KGDQ-------WKEALAV 510
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M + P+ + S +MA L+ +M++ G+ P + SY A+ +
Sbjct: 511 LKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVR 570
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G + + M SGVVP+ AL+
Sbjct: 571 GGQWKEGIALLEEMRGSGVVPDVITYHALM 600
>gi|294883700|ref|XP_002771031.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239874237|gb|EER02847.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 941
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R F+I+Q+M ++K+ N +F ++ E D+ ++M GI P + +Y
Sbjct: 543 VDRVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYST 602
Query: 231 ALFGFCKLGNTDKAYEVDAHM-------GESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+C G+ D A+ V M G P+E ++LL +VD+ ++L
Sbjct: 603 VVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLL 662
Query: 284 HRLRTLVRQVSESTFKII 301
+R S T I+
Sbjct: 663 DEMRANGVAPSNYTLSIL 680
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
+Y + RSN I L+ +N ++ C+ + GS ++R +IF++M
Sbjct: 549 IYQEMRSNKIPLNTVSFNTIMDACA-RSGS---------------MERVSDIFREMDEQG 592
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-------IPPKLRSYGPALFGFCKL 238
++P+ T+++V + D + AF +++ M P Y L G K
Sbjct: 593 IEPDIITYSTVVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQ 652
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
D+A ++ M +GV P LS L+KL A+++ + + ++ L T
Sbjct: 653 HRVDQALQLLDEMRANGVAPSNYTLSILVKLLGRARRLLEAFNMVEDLST 702
>gi|194382740|dbj|BAG64540.1| unnamed protein product [Homo sapiens]
Length = 211
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 393 SDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILH 452
+ +F+ ++ PFD VIDG NV + L VV++L + S + L++L
Sbjct: 17 QELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAKRS----LRLLVLG 72
Query: 453 KGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDE 508
+ + Q +++ ++ + + + S DD + LYAT+ +C+ +T D
Sbjct: 73 RKHMLRRSFQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR--FITRDL 128
Query: 509 MRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP 563
MRDH L F +W++ HQ+ + G L Y V+Q + SWH+P
Sbjct: 129 MRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIP 187
Query: 564 ----VITGDDLEAPRQWLC 578
++ E P +WLC
Sbjct: 188 YDEDLVERCSCEVPTKWLC 206
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G E+ +MI P+EA +++ K + AFDLV ++K FG+ P L Y +
Sbjct: 304 GEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALIN 363
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G D+A + +MG G+ P + S L+ K+D L ++
Sbjct: 364 SMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKM 416
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 82/184 (44%), Gaps = 18/184 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + A L+D+ +NG+ + Y L+ S + G+ N F
Sbjct: 437 KLGKLRAAKSLFDEMIANGLKPNVVIYTSLI--------SGYCKEGELHN--------AF 480
Query: 176 EIFQQMITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ +M + PN TFT+ ++ L A E A L +M + + P +Y + G
Sbjct: 481 RLYHEMTGKGISPNTYTFTALISGLCHANRMAE-ANKLFGEMVEWNVIPNEVTYNVLIEG 539
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
CK GNT +A+E+ M E G+VP+ L+ +V + E ++ L+ ++++
Sbjct: 540 HCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLN 599
Query: 295 ESTF 298
E F
Sbjct: 600 EMCF 603
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D KRG + AL GI + + Y+ L+ CK G
Sbjct: 397 IDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLI-SGHCKLGK--------------- 440
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ +F +MI + + PN +TS+ + + AF L +M GI P ++
Sbjct: 441 LRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTA 500
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +A ++ M E V+P E + L++ + +E+L +
Sbjct: 501 LISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEM 556
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD + G++ +A++L+D G + YN+L+ CK G
Sbjct: 747 LDYLTSEGNIEKAIQLHD-VLLEGFLANTVTYNILIR-GFCKLGR--------------- 789
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ E+ MI + P+ +++++ + D + A L + M + G+ P +Y
Sbjct: 790 IQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNF 849
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
++G C G KA+E+ M GV P ++L+
Sbjct: 850 LIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 886
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ +QM + P+ +T++ + +MAF L M S G P + +Y + G
Sbjct: 655 IDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALING 714
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
CK+G DKA + M S +P + + L ++K ++
Sbjct: 715 LCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL 762
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 70/183 (38%), Gaps = 16/183 (8%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR 163
E + + +D K+G++ A L + + G+ S YN L+ CK G
Sbjct: 320 EAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALIN-SMCKDGK-------- 370
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
L +F M + PN+ T++ + + ++A + +M GI
Sbjct: 371 -------LDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKA 423
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ Y + G CKLG A + M +G+ P ++L+ ++ + +
Sbjct: 424 TVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLY 483
Query: 284 HRL 286
H +
Sbjct: 484 HEM 486
>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSV-ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK+ F + QM+T+ V PN T+ + L+ A+ E A LV QMK G+ P +Y
Sbjct: 592 LKKAFAVHSQMLTEGVSPNVETYNILLGGLSAARLIKEAA-GLVNQMKERGLVPNATTYD 650
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G K+GN + ++ M G VP+ + L+ KK+ + E++ ++
Sbjct: 651 ILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVR 710
Query: 290 VRQVSESTFKI-IEDWF 305
+ ST+ I I W+
Sbjct: 711 GIPPNSSTYDILICGWY 727
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F++M + P+ +++ + K + A ++ K+M++ GI P + SY
Sbjct: 296 LDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSI 355
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFCK G DKA EV M SG++P+ S L+
Sbjct: 356 LIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILI 392
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A ++ K+MK+ GI P + SY + GFC+ G D+A EV M SG++P S L+
Sbjct: 299 ASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILID 358
Query: 269 LSVDAKKVDKVYEILHRLR 287
+VDK E+ ++
Sbjct: 359 GFCKEGRVDKALEVFEEMK 377
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F++M + PN +++ + + + A ++ ++MK+ GI P + SY + GF
Sbjct: 336 EVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGF 395
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD---KVYEILHRL 286
C+ G+ D A + M + P +L+K +K+ K + I+ +L
Sbjct: 396 CRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKL 449
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 80/211 (37%), Gaps = 21/211 (9%)
Query: 99 RRESPEGVLRHKLDMC-SKRGDVFEALRLYDDARSNGITLSQHHYNVL--LYVCSCKCG- 154
R P+ V L C +KR + +A+ L+ GIT + Y +L L++ CK
Sbjct: 519 RNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDV 578
Query: 155 --------SESSENGDRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVAR 198
ES D+ ++L + R +F +M + PN T+T
Sbjct: 579 AYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFIN 638
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG-VV 257
+ A L ++MK G+ P Y + FC G ++A + M + G
Sbjct: 639 EYLKLNKNNQAHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCT 698
Query: 258 PEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
P + L+ + K D+ ++ +R
Sbjct: 699 PNVVMYTCLINSYIKLNKRDQAEKLYEEMRA 729
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G +I M+ PN TF S+ + E AF L+ M S GI P YG
Sbjct: 524 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 583
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK G D A V M GV P S +L A++ ++ H +
Sbjct: 584 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 643
Query: 291 RQVSESTFKII 301
VS T+ ++
Sbjct: 644 TTVSIHTYGVV 654
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
IF M+T + PN+ F + + A + + M++ G+ P ++ + C
Sbjct: 389 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 448
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G D A HM + GV P E L++ + ++ K E++ +
Sbjct: 449 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM 498
Score = 39.7 bits (91), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
P++ +V ++ G+ P SY ++GF K G DKA+ + M E GV+P+ ++
Sbjct: 172 PDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNS 230
Query: 266 LLKLSVDAKKVDKVYEILHRL 286
++K K++DK I+ ++
Sbjct: 231 IIKELCKMKEMDKAESIVQKM 251
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ V P S+ + ++ + A +V++M GI P L +Y + G C
Sbjct: 212 LFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLC 271
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K DKA V M E+G P ++L+
Sbjct: 272 KSKAMDKAERVLEQMVEAGTRPNSITYNSLI 302
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G +I M+ PN TF S+ + E AF L+ M S GI P YG
Sbjct: 544 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 603
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK G D A V M GV P S +L A++ ++ H +
Sbjct: 604 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 663
Query: 291 RQVSESTFKII 301
VS T+ ++
Sbjct: 664 TTVSIHTYGVV 674
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
IF M+T + PN+ F + + A + + M++ G+ P ++ + C
Sbjct: 409 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 468
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G D A HM + GV P E L++ + ++ K E++ +
Sbjct: 469 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM 518
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ V P S+ + ++ + A +V++M GI P L +Y + G C
Sbjct: 232 LFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLC 291
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K DKA V M E+G P ++L+
Sbjct: 292 KSKAMDKAERVLEQMVEAGTRPNSITYNSLI 322
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
P++ +V ++ G+ P SY ++GF K G DKA+ + M E GV+P+ ++
Sbjct: 192 PDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNS 250
Query: 266 LLKLSVDAKKVDKVYEILHRL 286
++K K++DK I+ ++
Sbjct: 251 IIKELCKMKEMDKAESIVQKM 271
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 97 KARRESPEG----VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
KARR P+ +L H L K G E L+ + G L YN+++ CK
Sbjct: 544 KARRFVPDARSYSILIHGL---IKAGFANETYELFYSMKEQGCVLDTRAYNIVI-DGFCK 599
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
CG + + +++ ++M T +P T+ SV + + A+ L
Sbjct: 600 CGK---------------VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
++ KS I + Y + GF K+G D+AY + + + G+ P ++LL V
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKII 301
A+++++ ++ L ++ T+ I+
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGIL 733
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 26/219 (11%)
Query: 111 LDMCSKRGDVFEALRLYD-----DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+D K G V +A ++Y+ D R+N I + N N R+
Sbjct: 454 IDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFF--------------NHGRKE 499
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
D G +I++ MI P+ + +PE + +++K+ P
Sbjct: 500 D-------GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDA 552
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
RSY + G K G ++ YE+ M E G V + + ++ KV+K Y++L
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR 324
++T + + T+ + D +D + + ++ +K +
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 651
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+FQQM +P FT++ R + + A L+ +MKS + + Y + F
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K+G D A++ + +G+ P+E ++++ + A ++D+ E+ L
Sbjct: 250 KVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL 299
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/196 (18%), Positives = 80/196 (40%), Gaps = 6/196 (3%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++G +F+++ + P+ +++ + + ++L MK G R+Y
Sbjct: 534 EKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIV 593
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GFCK G +KAY++ M G P +++ ++D+ Y + ++
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653
Query: 292 QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQ 351
+++ + + D F V + L + E +++ G + W V+ +
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYL------ILEELMQKGLTPNLYTWNSLLDALVKAEE 707
Query: 352 IDENGVCCSCNERLVC 367
I+E VC + L C
Sbjct: 708 INEALVCFQSMKELKC 723
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ G+++ Q M K P + +T++ A +M L +QM+ G P + +
Sbjct: 149 LREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTT 208
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GF K G D A + M S + + + + KVD ++ H +
Sbjct: 209 LIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG 268
Query: 291 RQVSESTF 298
+ E T+
Sbjct: 269 LKPDEVTY 276
Score = 38.5 bits (88), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+K G V AL L D+ +S+ + YNV C + G +
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNV--------CIDSFGKVGK--------VDMA 257
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ F ++ + + P+E T+TS+ + + A ++ + ++ P +Y + G
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG 317
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G D+AY + G +P + +L KVD+ ++ ++
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370
>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 77/189 (40%), Gaps = 7/189 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E+ QM+ PN ATF ++ R V E + QM+ G P + +Y
Sbjct: 295 VPRAQELLCQMMETGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNF 354
Query: 231 ALFGFCKLG--NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ C G N D A +V A M G +P+ + +LKL + V+ + R++
Sbjct: 355 LMETHCGKGQSNLDAAMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQE 414
Query: 289 LVRQVSESTFKIIEDWFD---SVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW 345
L + + T+ ++ F+ S+D + D V + G + + G G W
Sbjct: 415 LQCKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALI--ESFCGRGNW 472
Query: 346 RVERTQIDE 354
R + E
Sbjct: 473 RRAHATLRE 481
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++++M + PN T+ + +L ++ +M + K M + G+ P + +YG + FC
Sbjct: 408 LYERMQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFC 467
Query: 237 KLGNTDKAYEVDAHM-GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL--RTLVRQV 293
GN +A+ M E + P +P +L L A ++ K E++ + R +++
Sbjct: 468 GRGNWRRAHATLREMVEEKSLKPTKPVYDMVLMLLRKAGQLRKHEELVELMADRGFIKRP 527
Query: 294 SESTF 298
SE
Sbjct: 528 SEDAL 532
>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
gi|223975267|gb|ACN31821.1| unknown [Zea mays]
Length = 469
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F F +M V PN T+ + + A +L+ +MK GI P S+
Sbjct: 306 LDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNA 365
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ FC++ +KA ++ M GV P+ +AL+K D ++VD+ EI+ + ++
Sbjct: 366 PILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDERRVDEAKEIILAMESI 424
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 46/97 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + F QM++D + + ++ V + E A + +K M+ G P L ++
Sbjct: 201 ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNT 260
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+ KLGN A + E G++P+ ++L+
Sbjct: 261 LINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLI 297
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%)
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M D P+ T+ ++ + + A LVKQM+ GI P + +Y + GFC
Sbjct: 1 MPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 60
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
++A V M E GV E +L+ + + ++ Y +L
Sbjct: 61 VEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRML 103
>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Cucumis sativus]
Length = 505
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 80/184 (43%), Gaps = 16/184 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + A +++D+ G+ + YN+L+ C+ G S G +
Sbjct: 226 GKLSLAFKVFDEISKRGVACNAVTYNILIGGL-CRKGQVSKAEG---------------L 269
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M ++P TF + + A ++++K G+ P L +Y + GF K
Sbjct: 270 LERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSK 329
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
+GN+ E+ M + G+ P + + L+ V + ++K YE+ H ++ + + T
Sbjct: 330 VGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHT 389
Query: 298 FKII 301
+ ++
Sbjct: 390 YGVL 393
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 16/203 (7%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
++ C + GD+ +A ++ G+ +Q+ Y +++ NG +
Sbjct: 149 IEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMI-------------NGFFKKGYK-- 193
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
K GFE++Q+M V PN T+ S+ +AF + ++ G+ +Y
Sbjct: 194 -KDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNI 252
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C+ G KA + M + + P + L+ + ++DK L +L+ +
Sbjct: 253 LIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIG 312
Query: 291 RQVSESTFKIIEDWFDSVDAAEI 313
+ T+ I+ F V + +
Sbjct: 313 LCPTLVTYNILISGFSKVGNSSV 335
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M + P++ T+T + V +D E A+++ MK G+ P +YG + G
Sbjct: 338 ELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGL 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEE 260
C GN +A ++ M E + P +
Sbjct: 398 CIKGNMVEASKLYKSMVEMHLQPND 422
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N + +GFE+ QM T V PN +T + D + A + +M G+
Sbjct: 120 NGNVSKGFELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYI 179
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL-------KLSVDAKKVDKV 279
Y + GF K G +E+ M GV+P ++L+ KLS+ K D++
Sbjct: 180 YTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEI 238
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 78/188 (41%), Gaps = 16/188 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G+V + L + G++ + Y +L+ C C+ NGD + +
Sbjct: 119 ENGNVSKGFELLAQMETMGVSPNVFIYTILIEAC-CR-------NGD--------IDQAK 162
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M + N+ +T + K + F+L ++MK G+ P L +Y + +
Sbjct: 163 VMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNLYTYNSLITEY 222
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C+ G A++V + + GV + L+ +V K +L R++ +
Sbjct: 223 CRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTT 282
Query: 296 STFKIIED 303
TF ++ D
Sbjct: 283 RTFNMLMD 290
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GD+ AL+L +D + GI Y VL+ +CK G N+
Sbjct: 419 IDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVN-GACKLG-------------NML 464
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + E F +M+ + P++ +T+ + D AF L ++M + G PP + +Y
Sbjct: 465 MAK--EFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPDVITYNV 522
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CKLGN ++A E+ M G VP+ ++ + ++ + + EI + +
Sbjct: 523 FVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDM 578
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
L+ G EIF M++ P T+T + A + D MA+ L +M+ G+ P + +Y
Sbjct: 568 LREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFL--EMQEKGVVPNVITY 625
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFCK+ D+A + M E G+ P + + L+
Sbjct: 626 NVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILI 664
Score = 45.8 bits (107), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 43/91 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F++M+ ++ P+ + ++ K A ++ + M +GI P + +Y L FC
Sbjct: 189 VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFC 248
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K G +A ++ M E G P E + L+
Sbjct: 249 KGGEVQRALDLVPKMQERGCYPSEVTFNVLI 279
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKR 173
SK+G++ +A L + G+ +S + YN L +C CK G L
Sbjct: 283 SKKGELQQAKGLIQEMAKAGLRVSPYTYNPL--ICGYCKKGL---------------LVE 325
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
++++M+T V P A+ ++ + A + M + P + SY ++
Sbjct: 326 ALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIY 385
Query: 234 GFCKLGNTDKAY 245
GFC+LGN +A+
Sbjct: 386 GFCRLGNIGEAF 397
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 87/210 (41%), Gaps = 25/210 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL--GL---- 171
G EA+ L+ + R G + H Y V++ + C E G R D + GL
Sbjct: 88 GRRMEAINLFSEMRERGCEPNIHTYTVMI---NAMCKETKLEEGRRILDEMVEKGLVPSV 144
Query: 172 -----------KRGF-----EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
K G EI M ++ +PNE T+ + K++ A L+ +
Sbjct: 145 PTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSK 204
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M + P + +Y + G CK+G D AY + M E+GVVP++ S + +
Sbjct: 205 MLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGR 264
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+++ + + L+ + +E + + D +
Sbjct: 265 IEEANVLFNSLKEKGIKANEVIYTALIDGY 294
Score = 47.8 bits (112), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 8/191 (4%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
G IF++M D P T+T + A +L +M+ G P + +Y +
Sbjct: 57 EGINIFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMI 116
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
CK ++ + M E G+VP P +AL+ V+ EIL + +
Sbjct: 117 NAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCN 176
Query: 293 VSESTFKIIEDWF---DSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQ---GWLGSGKWR 346
+E T+ + F +V A + S++ +V HGQ G+L S +R
Sbjct: 177 PNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSA-YR 235
Query: 347 VERTQIDENGV 357
+ ++ENGV
Sbjct: 236 L-LNLMNENGV 245
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 63/304 (20%), Positives = 120/304 (39%), Gaps = 63/304 (20%)
Query: 26 LPLMHQSNCH----TYRSLLCW-----HMHSFTKPITDIKQNRFSADLTT------GLCT 70
L LMH ++C+ TY L+C ++H ++ + ++R + + T G C
Sbjct: 167 LDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCK 226
Query: 71 L-----AFSKKSTVNESSA-PNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEAL 124
+ A+ + +NE+ P+ T S +D K+G + EA
Sbjct: 227 IGYLDSAYRLLNLMNENGVVPDQWTYSVF-----------------IDTLCKKGRIEEAN 269
Query: 125 RLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENG--DR-------ENDSNLG--- 170
L++ + GI ++ Y L+ Y CK G N DR N S
Sbjct: 270 VLFNSLKEKGIKANEVIYTALIDGY---CKAGKMDDANSLLDRMLTEDCLPNSSTYNALI 326
Query: 171 --------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
++ + + MI + T+T + + + D + A ++ QM S G
Sbjct: 327 DGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQ 386
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P + Y + FC GN +A ++ + M E GV+P+ + ++ ++ +++
Sbjct: 387 PDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDV 446
Query: 283 LHRL 286
L R+
Sbjct: 447 LKRM 450
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 29/126 (23%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVAR-------------LAVAKEDP----------- 206
L F++ ++M DP+ T++ + + +A+ P
Sbjct: 440 LNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVW 499
Query: 207 -----EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
E A +L ++M G P + +Y + G CK+G A ++ HM E GV P E
Sbjct: 500 KMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEA 559
Query: 262 ELSALL 267
++LL
Sbjct: 560 IYNSLL 565
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V A + D SN ++ YN L+ CG +N
Sbjct: 151 IDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELI------CGFCRKKN---------- 194
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + +M+ ++ P+ T+ S+ + A+ L+ M G+ P +Y
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSV 254
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK G ++A + + E G+ E +AL+ A K+D +L R+ T
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTED 314
Query: 291 RQVSESTFKIIED 303
+ ST+ + D
Sbjct: 315 CLPNSSTYNALID 327
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ +A + + +G+ L + Y LL C CK G ++ +
Sbjct: 627 GDIGKAFEYFTKIKESGLKLDVYIYETLLRAC-CKSGR---------------MQSALAV 670
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M K+ N + + + D A DL+KQMK G+PP + +Y + CK
Sbjct: 671 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 730
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ +A +V M + G+ P + L+K
Sbjct: 731 AGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 761
Score = 45.4 bits (106), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + +G+ + H Y + C CK G
Sbjct: 690 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC-CKAGD--------------- 733
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
++R ++ ++M+ + PN T+T++ + P+ A ++MK G+ P SY
Sbjct: 734 MQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASY 791
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ +A + + +G+ L + Y LL C CK G ++ +
Sbjct: 628 GDIGKAFEYFTKIKESGLKLDVYIYETLLRAC-CKSGR---------------MQSALAV 671
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M K+ N + + + D A DL+KQMK G+PP + +Y + CK
Sbjct: 672 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 731
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ +A +V M + G+ P + L+K
Sbjct: 732 AGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 762
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + +G+ + H Y + C CK G
Sbjct: 691 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC-CKAGD--------------- 734
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
++R ++ ++M+ + PN T+T++ + P+ A ++MK G+ P SY
Sbjct: 735 MQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASY 792
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-------- 170
D+ AL ++ +S G+ L+ Y++L+ + S+S++N +E + L
Sbjct: 314 DMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYS 373
Query: 171 -----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
++R E+ ++M D +D + S+ ++ + +++K
Sbjct: 374 NIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKEC 433
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G P + SYG L + K+G KA + M G+ S L+
Sbjct: 434 GFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI 481
>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia seriphioides]
Length = 414
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ G D N
Sbjct: 172 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLIN------GLCKEXKMDEAN---------- 215
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + P TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 216 ELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 275
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK GB +A+ + M G P++ + L+ +D +E HR R +
Sbjct: 276 CKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFE--HRKRMI 327
>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 755
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ CSKRG EA+ L + G+T Y + +NG E
Sbjct: 537 IAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAI--------DAYGKNGQWE------ 582
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
R E+ +QM T + PN T+ SV + + E A DL+K++K + P L SY
Sbjct: 583 --RAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNL 640
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
A+ K G ++A ++ M G+ P+
Sbjct: 641 AISACGKRGRWEEALDLLREMPAEGLTPD 669
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 76/192 (39%), Gaps = 17/192 (8%)
Query: 98 ARRESPEGV-LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156
A+R P+ + ++ C K G AL L + G+T + N+ + C
Sbjct: 418 AKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRAC------- 470
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
G+R + G E+ +QM + PN T+ S + E A DL+ +M
Sbjct: 471 ----GERGR-----WQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKM 521
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
K + P +Y A+ K G +A + M G+ P+ +A + +
Sbjct: 522 KELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQW 581
Query: 277 DKVYEILHRLRT 288
++ E+L ++ T
Sbjct: 582 ERAVELLRQMPT 593
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 68/173 (39%), Gaps = 16/173 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C K G EAL + + + G+T YN+ + C + G K
Sbjct: 260 CGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACG-RSGR---------------WKE 303
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ +QM + V P+ ++ + + E + DL+ +M G+ P + A+
Sbjct: 304 AVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIHFNSAIV 363
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K G +KA E+ + G+ P+ ++ + + + + E+L +
Sbjct: 364 ACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEM 416
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 73/185 (39%), Gaps = 16/185 (8%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C K G +A+ L + + G+T +N + C+ K G K
Sbjct: 365 CGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACT-KSGR---------------WKE 408
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ ++M ++ P+ ++ S EMA +L +QM + G+ P + S A+
Sbjct: 409 ALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIR 468
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
+ G + E+ M G+ P ++ +K + +K ++L +++ L
Sbjct: 469 ACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTP 528
Query: 294 SESTF 298
T+
Sbjct: 529 DSITY 533
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/202 (18%), Positives = 76/202 (37%), Gaps = 21/202 (10%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
L+ L + G EAL + D+ + G+ + H Y + C + E + RE
Sbjct: 113 LQAALREAATTGKWREALGILDEMKEGGVVCA-HSYTTAITTCGRQGQWEKALELLREIP 171
Query: 167 SNLGL--------------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP 206
G+ + + ++M +V P+E ++ S +
Sbjct: 172 EQEGVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQW 231
Query: 207 EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266
E L+++M S G+ P +Y + G K G +A V M G+ PE +
Sbjct: 232 ERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMA 291
Query: 267 LKLSVDAKKVDKVYEILHRLRT 288
++ + + + E+L ++ +
Sbjct: 292 IRACGRSGRWKEAVEVLRQMES 313
>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12300, mitochondrial; Flags: Precursor
gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + A L+++ GIT + YN+L+ N R +D
Sbjct: 270 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI---------GGFCNAGRWDD---- 316
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
G ++ + MI K++PN TF+ + V + A +L K+M GI P +Y
Sbjct: 317 ---GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GFCK + DKA ++ M G P + L+ A ++D E+ ++
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 52/131 (39%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + ++ M++ DPN TF + + +L ++M G+ +Y
Sbjct: 384 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 443
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFC+LG + A E+ M V P LL D + +K EI ++
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503
Query: 291 RQVSESTFKII 301
++ + II
Sbjct: 504 MELDIGIYNII 514
Score = 38.9 bits (89), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 58/134 (43%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ EIF+++ K++ + + + + A+DL + G+ P +++Y
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ G CK G +A + M E G P+ + L++ + K +++ L+
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGF 609
Query: 292 QVSESTFKIIEDWF 305
V ST K++ D
Sbjct: 610 SVDASTIKMVIDML 623
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ +A + + +G+ L + Y LL C CK G ++ +
Sbjct: 606 GDIGKAFEYFTKIKESGLKLDVYIYETLLRAC-CKSGR---------------MQSALAV 649
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M K+ N + + + D A DL+KQMK G+PP + +Y + CK
Sbjct: 650 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 709
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ +A +V M + G+ P + L+K
Sbjct: 710 AGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 740
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + +G+ + H Y + C CK G
Sbjct: 669 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC-CKAGD--------------- 712
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
++R ++ ++M+ + PN T+T++ + P+ A ++MK G+ P SY
Sbjct: 713 MQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASY 770
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 66/157 (42%), Gaps = 19/157 (12%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-------- 170
D+ AL ++ +S G+ L+ Y++L+ + S+S++N +E + L
Sbjct: 292 DMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNGIIYS 351
Query: 171 -----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
++R E+ ++M D +D + S+ ++ + +++K
Sbjct: 352 NIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKEC 411
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
G P + SYG L + K+G KA + M G+
Sbjct: 412 GFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGI 448
>gi|47497141|dbj|BAD19190.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
gi|47497588|dbj|BAD19658.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
Length = 462
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
GL+ G + +M V+P+ T+ S+ A + P A DL +M GI P SY
Sbjct: 62 GLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYN 121
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
P + + G+ + AY V A M E G+ P + + LL A Y + L+
Sbjct: 122 PLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYAMNAYRMFRYLQRA 181
Query: 290 VRQVSESTFKII 301
VS T+ +
Sbjct: 182 GLPVSIVTYNTM 193
>gi|410048166|ref|XP_003952521.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Pan troglodytes]
gi|410048168|ref|XP_003952522.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Pan troglodytes]
Length = 211
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 393 SDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILH 452
+ +F+ ++ PFD VIDG NV + L VV++L + + L++L
Sbjct: 17 QELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQL----AKQNLRLLVLG 72
Query: 453 KGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTNDE 508
+ + +Q +++ ++ + + + S DD + LYAT+ +C+ +T D
Sbjct: 73 RKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR--FITRDL 128
Query: 509 MRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHVP 563
MRDH L F +W++ HQ+ + G L Y V+Q + SWH+P
Sbjct: 129 MRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQ-TTGDSWHIP 187
Query: 564 ----VITGDDLEAPRQWLC 578
++ E P +WLC
Sbjct: 188 YDEDLVERCSYEVPTKWLC 206
>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g18475-like [Glycine max]
Length = 640
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 171 LKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+K FE+F++M++ D + P+ T+ + + P+ A ++++ MKS P + +Y
Sbjct: 379 VKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARNVIEFMKSNRCYPNVYNYS 438
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G CK+G + A V A M SG+ P+ ++L+ ++ + +L ++
Sbjct: 439 ALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQIGEAMGLLKEIKEN 498
Query: 290 VRQVSESTFKII------EDWF-DSVDAAE 312
Q TF +I ED F +++D E
Sbjct: 499 TCQADTVTFNVILGGLCREDRFEEALDMLE 528
>gi|302795769|ref|XP_002979647.1| hypothetical protein SELMODRAFT_271393 [Selaginella moellendorffii]
gi|302807285|ref|XP_002985355.1| hypothetical protein SELMODRAFT_157280 [Selaginella moellendorffii]
gi|300146818|gb|EFJ13485.1| hypothetical protein SELMODRAFT_157280 [Selaginella moellendorffii]
gi|300152407|gb|EFJ19049.1| hypothetical protein SELMODRAFT_271393 [Selaginella moellendorffii]
Length = 495
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 23/173 (13%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
+YD+ +G+ +++LL C G R D+ F+QM T
Sbjct: 82 VYDEMLVDGVQPGPATFHLLLSGCM---------KGSRLQDTMF-------FFEQMRTMG 125
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL-GNTDKA 244
+ P+ AT++ V AF + ++M++ G+ PKL ++ AL C + G+TDKA
Sbjct: 126 IIPDVATYSLVIAACGKCNQLSRAFRVGEEMEASGVQPKLETF-VALLSACGVAGDTDKA 184
Query: 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKV-----DKVYEILHRLRTLVRQ 292
+E+ M G+ E SAL+ + K + DK+YEI+ + + L +
Sbjct: 185 FEILRRMTTYGITFNEYCYSALIAAYKNRKPIQPDTFDKIYEIVKKSKALASE 237
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+++ +M+ D V P ATF + + + +QM++ GI P + +Y +
Sbjct: 81 DVYDEMLVDGVQPGPATFHLLLSGCMKGSRLQDTMFFFEQMRTMGIIPDVATYSLVIAAC 140
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
K +A+ V M SGV P+ ALL A DK +EIL R+ T
Sbjct: 141 GKCNQLSRAFRVGEEMEASGVQPKLETFVALLSACGVAGDTDKAFEILRRMTT 193
>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
inaguensis]
Length = 431
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 18/174 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ K M S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK G+ +A+ + M G+ P++ + L+ +D ++ HR R +
Sbjct: 293 CKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFK--HRKRMI 344
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGC-CKEGD---------------LDTAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++MI + ++ +T++ + A ++++M S G+ P + +Y + F
Sbjct: 338 KHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M +G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLM 429
>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
Length = 714
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVF-EALRLYDDARSNGITLSQHHYNVLLYVCSCKC 153
K R+ P + + L R + F +A +DD ++ GI+ + Y+ ++ C
Sbjct: 331 KMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASC---- 386
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
R D+ + F++F +MI ++ P+ TF+++ + + E A D++
Sbjct: 387 ---------RSKDNWVT---AFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVL 434
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ M+ GI +R Y + + G D A+ + G+ P +AL+ A
Sbjct: 435 EWMQDAGIQLNIRMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHACKVA 494
Query: 274 KKVDKVYEILHRLR 287
+ +D+ + +L ++
Sbjct: 495 RDLDRAFRVLELMK 508
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 39/293 (13%)
Query: 33 NCHTYRSLL--CWHMHSFTKPIT---DIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNT 87
N TY SL+ C ++F++ D++ S ++ T +A + S N
Sbjct: 340 NVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCR-------SKDNW 392
Query: 88 GTMSNKSKKKARRESPEGVLRHK--LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL 145
T + + R+E P + L +C +A+ + + + GI L+ Y+ +
Sbjct: 393 VTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAV 452
Query: 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED 205
++VC R +D F I + D + PN FT++ D
Sbjct: 453 VHVCG---------QAGRLDD-------AFRILDECKRDGIKPNVIMFTALIHACKVARD 496
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK-LGNTDKAYEVDAHMGESGVVPEEPELS 264
+ AF +++ MK + P L ++ L G C+ +GN+ A++V + E G +
Sbjct: 497 LDRAFRVLELMKEDHVTPNLVTFN-VLLGTCEVVGNSTCAFQVVGLLQEYGFRANLQTFN 555
Query: 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE-------DWFDSVDA 310
L+K V + + K +E+ +++ + S STF + DW ++D
Sbjct: 556 TLIKTCVRSHEWQKAFEVYSQMQLQRIRPSLSTFNALSMAAEEGGDWRRAIDV 608
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/202 (20%), Positives = 83/202 (41%), Gaps = 28/202 (13%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS--------ENGDREN 165
C D+ A R+ + + + +T + +NVLL C S + E G R N
Sbjct: 491 CKVARDLDRAFRVLELMKEDHVTPNLVTFNVLLGTCEVVGNSTCAFQVVGLLQEYGFRAN 550
Query: 166 DSNLGL-----------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
++ FE++ QM ++ P+ +TF +++ A D A D++
Sbjct: 551 LQTFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRPSLSTFNALSMAAEEGGDWRRAIDVMV 610
Query: 215 QM---------KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
M + G P +++Y + K N KA++V M SGV +
Sbjct: 611 DMRIKTEKILIRMAGHTPSVQAYNSLISACVKSSNYQKAFDVYKGMKTSGVRANIVTYNL 670
Query: 266 LLKLSVDAKKVDKVYEILHRLR 287
++ + +K+ +V ++++ ++
Sbjct: 671 IISILSGQRKLSEVLKVINEMK 692
>gi|294883698|ref|XP_002771030.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
gi|239874236|gb|EER02846.1| pentatricopeptide repeat-containing protein, putative [Perkinsus
marinus ATCC 50983]
Length = 994
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R F+I+Q+M ++K+ N +F ++ E D+ ++M GI P + +Y
Sbjct: 533 VDRVFDIYQEMRSNKIPLNTVSFNTIMDACARSGSMERVSDIFREMDEQGIEPDIITYST 592
Query: 231 ALFGFCKLGNTDKAYEVDAHM-------GESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+C G+ D A+ V M G P+E ++LL +VD+ ++L
Sbjct: 593 VVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQHRVDQALQLL 652
Query: 284 HRLRTLVRQVSESTFKII 301
+R S T I+
Sbjct: 653 DEMRANGVAPSNYTLSIL 670
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
+Y + RSN I L+ +N ++ C+ + GS ++R +IF++M
Sbjct: 539 IYQEMRSNKIPLNTVSFNTIMDACA-RSGS---------------MERVSDIFREMDEQG 582
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-------IPPKLRSYGPALFGFCKL 238
++P+ T+++V + D + AF +++ M P Y L G K
Sbjct: 583 IEPDIITYSTVVKGYCLAGDVDTAFSVLRDMSGVSRRGGRKKFAPDEIMYNSLLDGCAKQ 642
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
D+A ++ M +GV P LS L+KL A+++ + + ++ L T
Sbjct: 643 HRVDQALQLLDEMRANGVAPSNYTLSILVKLLGRARRLLEAFNMVEDLST 692
>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 628
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ ++F + K N A F S+ E E+A++L ++ + + P + +Y
Sbjct: 472 VSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTI 531
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRLRTL 289
++G CK+G KAY++ M E G P + L++ L +++++ K+ E+LH++
Sbjct: 532 MIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSER-PKIVELLHKMAAR 590
Query: 290 VRQVSESTFKIIED 303
ST I+ D
Sbjct: 591 KLSPDASTLLIVMD 604
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 19/173 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S G+V EA RL D+ G+ + YN L+ G SEN DR
Sbjct: 760 SAAGNVDEAFRLRDEMLRRGLVPNIVTYNALIN------GLCKSENVDRAQ--------- 804
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+F ++ + PN T+ ++ + + AF L +M GI P + +Y + G
Sbjct: 805 -RLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALING 863
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV---DAKKVDKVYEILH 284
CK G+ +++ ++ M ++GV + E L++ + + +K+ K+Y+++H
Sbjct: 864 LCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMH 916
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + +M+ + PN T+ ++ E+ + A L ++ G+ P + +Y +
Sbjct: 768 AFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLID 827
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G+CK+GN D A+++ M E G+ P SAL+ +++ ++L+++
Sbjct: 828 GYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQM 880
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 72/173 (41%), Gaps = 31/173 (17%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS------CKCG 154
E GVL +D + G + +A+RL D+ G+ + L++C+ CK G
Sbjct: 332 ERAYGVL---IDGYCRTGKIDDAVRLLDEMLRLGLKTN-------LFICNSLINGYCKRG 381
Query: 155 SESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
G + +M+ + P+ ++ ++ + AF+L
Sbjct: 382 EIHEAEG---------------VITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCD 426
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+M GI P + +Y L G C++G D A ++ M + GV P+E S LL
Sbjct: 427 KMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLL 479
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++QQMI + P+ + + + A VK+M++ G+ P + +Y + G+
Sbjct: 213 VYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYV 272
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
LG+ + A V M E GV + L+K K+D+ ++L ++
Sbjct: 273 SLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQ 323
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
V+PN T+ S+ V+ D E A ++K M G+ + +Y + G+CK D+A
Sbjct: 257 VEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAE 316
Query: 246 EVDAHMG-ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+V M E+ +VP+E L+ K+D +L + L
Sbjct: 317 KVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRL 361
Score = 38.5 bits (88), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS--ESSENGDREND-------------- 166
A L+ D + G T S+ +N ++ CK G E+ E D+ D
Sbjct: 491 ASTLWKDILARGFTKSRITFNTMISGL-CKMGKMVEAEEIFDKMKDLGCSPDGITYRTLI 549
Query: 167 ------SNLGLKRGFEIFQQMITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSF 219
SN+G + F++ M + + P+ + S ++ L ++ E+ DL+ +M
Sbjct: 550 DGYCKASNVG--QAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVT-DLLTEMGIR 606
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
G+ P + +YG + G+CK G DKA+ M E+G+
Sbjct: 607 GLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGL 643
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 51/206 (24%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ + L L + G++ + Y L+ C CK G+ L R
Sbjct: 324 KEGNLHQGLVLLSEMVGKGLSPNVVTYTTLIN-CMCKAGN---------------LSRAV 367
Query: 176 EIFQQMITDKVDPNEATFTSV-----------------ARLAVAKEDPEM---------- 208
EIF QM + PNE T+T++ + + V+ P +
Sbjct: 368 EIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGY 427
Query: 209 --------AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
A +++ M G+PP + SY + GFC+ KA+++ M E GV+P+
Sbjct: 428 CFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDT 487
Query: 261 PELSALLKLSVDAKKVDKVYEILHRL 286
S+L++ +K+ + +++ +
Sbjct: 488 VTYSSLIQGLCLQQKLVEAFDLFREM 513
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 17/155 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C K G + E L ++ R G+ + YN L+ CK G+ L
Sbjct: 287 LCGK-GRMSEVGELVEEMRGKGLVPDEVTYNTLVN-GFCKEGN---------------LH 329
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+G + +M+ + PN T+T++ + A ++ QM+ G+ P R+Y +
Sbjct: 330 QGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLI 389
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
GFC+ G ++AY+V + M SG P +AL+
Sbjct: 390 DGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/347 (21%), Positives = 131/347 (37%), Gaps = 56/347 (16%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND-------- 166
S D +A R++ D NG++ + + YNV++ + E R+ +
Sbjct: 183 SNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNV 242
Query: 167 -----------SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
+K + + M V N ++ SV K +LV++
Sbjct: 243 VTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEE 302
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M+ G+ P +Y + GFCK GN + + + M G+ P + L+ A
Sbjct: 303 MRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGN 362
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG----- 330
+ + EI ++R + +E T+ + D F + G++N + E IV G
Sbjct: 363 LSRAVEIFDQMRVRGLRPNERTYTTLIDGF-----CQKGLMNEAYKVLSEMIVSGFSPSV 417
Query: 331 ---GGGWHGQGWLGS-----GKWR--VER----------TQID------ENGVCCSCNER 364
HG +LG G R VER T I E G E
Sbjct: 418 VTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEE 477
Query: 365 LVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAV 411
+V + P +T ++S + L Q+++ F+ F+E + R P D V
Sbjct: 478 MVEKGVLP-DTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEV 523
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + F++ ++M+ V P+ T++S+ + ++ AFDL ++M G+PP +Y
Sbjct: 468 LGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTS 527
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE-ILHRL--- 286
+ +C G KA + M + G +P+ S L+ ++ K KV + +L +L
Sbjct: 528 LINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLIN-GLNKKARTKVAKRLLLKLFYE 586
Query: 287 ---------RTLVRQVSESTFKIIE 302
TL+ S + FK +E
Sbjct: 587 ESVPDDVTYNTLIENCSNNEFKSVE 611
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G + EA+ L + +G T + YN LL + C SE +
Sbjct: 502 QKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDA----------------L 545
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +++ V P+ TF+S+ + ++ E A L ++ G+ PK Y L G
Sbjct: 546 ELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGL 605
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK D A + A+M +G +P E L++
Sbjct: 606 CKRCEIDNAIDFFAYMVSNGCMPNESTYIILIE 638
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 16/170 (9%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
RG V +AL L DD G + Y VLL C+ N G ++
Sbjct: 156 RGRVADALSLLDDMLRRGCQPNVVTYTVLLEA-MCR---------------NSGFEQAMA 199
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M PN T+ + + + A +L+ ++ S+G P SY L G C
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLC 259
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D E+ A M E +P E L++ V++ ++L ++
Sbjct: 260 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQM 309
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 19/190 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G V +A +L +D S G Y +L + +R +D+
Sbjct: 330 KQGRVDDAFKLLNDMGSYGCNPDTISYTTVL---------KGLCRAERWDDAK------- 373
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M+ + PNE TF + + K E A L++QM G + +Y + GF
Sbjct: 374 ELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGF 433
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G+ D A E+ M P + LL +A+++D E++ + +
Sbjct: 434 CVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNV 490
Query: 296 STFKIIEDWF 305
TF ++ +F
Sbjct: 491 VTFNVLVSFF 500
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 55/132 (41%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ M+ PN T+T + E A ++ +M++ G P + +Y +
Sbjct: 162 ALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIIN 221
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G C+ G D A E+ + G P+ + LLK +K+ D V E+ +
Sbjct: 222 GMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMP 281
Query: 294 SESTFKIIEDWF 305
+E TF ++ +F
Sbjct: 282 NEVTFDMLIRFF 293
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 48/111 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ PNE TF + R E A +++QM G +
Sbjct: 269 ELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSI 328
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G D A+++ MG G P+ + +LK A++ D E+L+ +
Sbjct: 329 CKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEM 379
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 53/114 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M+ PN TF + K E A +LV+QM G P L +Y L G
Sbjct: 476 ELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGI 535
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
K +++ A E+ + GV P+ S+++ + ++++ ++ H ++ +
Sbjct: 536 TKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDI 589
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 21/172 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G + +A+ L + +G T+ YN L+ NG +
Sbjct: 400 QKGLIEQAIMLIEQMSEHGCTVGVVTYNALV-------------NGFCVQGH---IDSAL 443
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F+ M PN T+T++ E + A +LV +M PP + ++ + F
Sbjct: 444 ELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFF 500
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRL 286
C+ G ++A E+ M E G P + LL ++ D D + E+LH L
Sbjct: 501 CQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDAL-ELLHGL 551
>gi|125575133|gb|EAZ16417.1| hypothetical protein OsJ_31886 [Oryza sativa Japonica Group]
Length = 678
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ SK+G V EAL + R NG L YN L+ + K
Sbjct: 503 LNAISKKGMVEEALGIARCIRENGYKLVLITYNTLIDALAKK----------------AE 546
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ +F +M++D + P++ T+ S+ K+ + A DL+ QM + G K ++
Sbjct: 547 VKKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQMLTLGFEVKTTTFVM 606
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+ C+ G + A E+ M +P S+++ V +K ++LH+
Sbjct: 607 VIQALCRDGKVEAAAEITKVMLSKNSIPGNSLCSSIVT-KVAKSGWNKEAQMLHQ 660
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 74/191 (38%), Gaps = 23/191 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+ K +AL + D+ G YN L+ SCK G R ND+
Sbjct: 363 VDLVCKNCGPQKALEVLDELSLEGCQPDVVTYNALISA-SCKAG--------RLNDAKF- 412
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
I ++ + ++PN T+ + + DL++ M P + +Y
Sbjct: 413 ------ILTRLAAEGLEPNGTTYCILLHALCNMRRWDEVCDLLEDMNQVNRDPDVTTYNI 466
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ FCK G+ D+A +V M + P+ + LL V++ I
Sbjct: 467 FINYFCKYGHLDQAIDVLERMVINNCSPDIVTCNTLLNAISKKGMVEEALGI-------A 519
Query: 291 RQVSESTFKII 301
R + E+ +K++
Sbjct: 520 RCIRENGYKLV 530
>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1508
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 22/195 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCK-------CGSESSENGD 162
L+ ++ G++FE ++Y+ ++ G + H Y +++ +C K SE E G
Sbjct: 901 LEAFAQAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGF 960
Query: 163 REN----DSNLGLKRGFEIFQ------QMITDK-VDPNEATFTSVARLAVAKEDPEMAFD 211
+ + +S L L E FQ QMI D + P+E T+ ++ + PE
Sbjct: 961 KPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLS 1020
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL-- 269
L+ +MKS G+ PK +Y + F K D+A E+ + +G + ++K+
Sbjct: 1021 LMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYR 1080
Query: 270 -SVDAKKVDKVYEIL 283
S D +K + + EI+
Sbjct: 1081 TSGDHQKAENLLEIM 1095
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 48/261 (18%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN----------GDRENDS 167
G +A L++ +SNG + YN LLY S + +E + G E
Sbjct: 385 GFALKAEHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTY 444
Query: 168 NLGLK---------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
N + +++ M + +P+ T+T + L E A ++ +M
Sbjct: 445 NTIIHMYGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLD 504
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
G+ P L +Y + + K+G +A E M ESG+ + S +L + ++ K
Sbjct: 505 AGVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKK 564
Query: 279 ------------------VYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLN-WD 319
+YE++ L LVR E+ +IE D E+G +N D
Sbjct: 565 AAALYQEMIEAGFTPDTGLYEVM--LPALVR---ENMGDVIERVVQ--DTKELGSMNPHD 617
Query: 320 VSKVREGIVRGGGGWHGQGWL 340
+S V +V+GG HG L
Sbjct: 618 ISSV---LVKGGCYDHGAKML 635
>gi|441595336|ref|XP_004087234.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Nomascus
leucogenys]
gi|441595339|ref|XP_004087235.1| PREDICTED: mitochondrial ribonuclease P protein 3 [Nomascus
leucogenys]
Length = 211
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 24/200 (12%)
Query: 393 SDFNKFQEWLGRHGPFDAVIDGANVG-LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVIL 451
+ +F+ ++ PFD VIDG NV + + S + LN V +Q + L++L
Sbjct: 17 QELKRFENFIKSCPPFDIVIDGLNVAKMFPKARESQFLLNVVSQLAKQ-----NLRLLVL 71
Query: 452 HKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCKSLLVTND 507
+ + +Q K+ ++ ++ + + S DD + LYAT+ +C+ +T D
Sbjct: 72 GRKHMLRQCSQWRKD-EMKEVQKQASCFFADNI-SEDDPFLLYATLHSGNHCR--FITKD 127
Query: 508 EMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQESENGSWHV 562
MRDH L F +W++ HQ+ + G L Y V+Q + SWH+
Sbjct: 128 LMRDHKACLPDAKTQRLFFKWQQGHQLAIINRFPGSKLTFQHILSYDTVVQ-TTGDSWHI 186
Query: 563 P----VITGDDLEAPRQWLC 578
P ++ E P +WLC
Sbjct: 187 PYDEDLVERYSYEVPTKWLC 206
>gi|449442465|ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
Length = 475
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K I ++M + + + V RL K + + A +L+K+M S I P + +Y
Sbjct: 146 KEALSILRKMSEFHLRADTTMYNLVIRLFTEKGEMDKAMELMKEMDSVDIHPNMITYISM 205
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L GFC +G + AY + M E+G P S L+ ++ + +D++ E+L +
Sbjct: 206 LKGFCDVGRWEDAYGLFKDMKENGCAPNTVVYSVLVNGAIRLRIMDRLMEMLKEM 260
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K F+ F++M+ + PNE T+ + R + + D + L MK G+ P L +Y
Sbjct: 505 IKDAFDCFKEMLEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNA 564
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ FCK+ KA E+ M G+ P+ S L+K
Sbjct: 565 IIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIK 602
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ + ++++ +P+ TF+ + ++ + AFD K+M +GI P +Y
Sbjct: 470 VKKVHGVVEKLLEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNI 529
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL---- 286
+ C G+T ++ ++ A+M ESG+ P +A+++ KKV K E+L +
Sbjct: 530 LIRSSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIG 589
Query: 287 --------RTLVRQVSES 296
TL++ +SES
Sbjct: 590 LKPDNFTYSTLIKALSES 607
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G V EA+ L + +G T + +N LL + C SE +
Sbjct: 500 QKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEA----------------L 543
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +++ V + T++SV + ++ E A ++ ++ G+ PK+ Y LF
Sbjct: 544 ELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFAL 603
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK TD+A + A+M +G +P E L++
Sbjct: 604 CKRCETDQAIDFFAYMVSNGCMPNESTYIILIE 636
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 88/237 (37%), Gaps = 29/237 (12%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
RG V +AL L DD G S Y VLL CK + G
Sbjct: 154 RGRVGDALALLDDMLQRGCQPSVVTYTVLLEA-VCK---------------SSGFGEAMN 197
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M PN T+ + + + A +++ ++ S+G P + SY L G C
Sbjct: 198 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLC 257
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR--------T 288
D + A M + VP E L++ V++ ++L ++ T
Sbjct: 258 AARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTT 317
Query: 289 LVRQVSESTFKI--IEDWFDSVDAAEIGVLNWDV---SKVREGIVRGGGGWHGQGWL 340
L V + K ++D +D ++ + N D + V G+ R G H + L
Sbjct: 318 LCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELL 374
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M+ PNE TF + + K E A L++ M +G + +Y + GF
Sbjct: 372 ELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGF 431
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPE---LSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
C G D A E+ ++ P EP + LL A+++D E+L +
Sbjct: 432 CVQGRVDSALELFNNL------PCEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCP 485
Query: 293 VSESTFKIIEDWF 305
++ TF ++ +F
Sbjct: 486 LNAVTFNVLVSFF 498
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED-PEMAFDLVKQMKSFGIPPKLRSYG 229
++R ++ QQM PN T ++ A+ K+ + A+D + M +G P SY
Sbjct: 297 VERAIQVLQQMSQHGCTPN-TTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYT 355
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C+ G + A E+ M P E + + + +++ +++ +
Sbjct: 356 TVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELM 412
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 16/158 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C K GD+ AL + + GI L + L+ S C +R
Sbjct: 407 IDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALI---SGFCREGQVIEAERT------ 457
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++M+ + P++AT+T V K D + F L+K+M+ G P + +Y
Sbjct: 458 -------LREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNV 510
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L G CK G A + M GVVP++ + LL+
Sbjct: 511 LLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLE 548
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G EI+QQM+ V P+ T+ ++ D A LV +M G+ P +Y +
Sbjct: 349 GMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLID 408
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G CK G+ + A E+ M + G+ + +AL+
Sbjct: 409 GCCKEGDLESALEIRKEMVKEGIELDNVAFTALI 442
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 52/107 (48%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M + PN+ TFT++ ++ ++ +QM G+ P + +Y + G
Sbjct: 316 KLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGL 375
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
CK+G+ +A ++ M + G+ P++ + L+ ++ EI
Sbjct: 376 CKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ +A + + +G+ L + Y LL C CK G ++ +
Sbjct: 632 GDIGKAFEYFTKIKESGLKLDVYIYETLLRAC-CKSGR---------------MQSALAV 675
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M K+ N + + + D A DL+KQMK G+PP + +Y + CK
Sbjct: 676 TREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 735
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ +A +V M + G+ P + L+K
Sbjct: 736 AGDMQRAEKVIEEMVDVGLKPNVKTYTTLIK 766
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + +G+ + H Y + C CK G
Sbjct: 695 IDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINAC-CKAGD--------------- 738
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
++R ++ ++M+ + PN T+T++ + P+ A ++MK G+ P SY
Sbjct: 739 MQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASY 796
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ M ++PN FTS+ D A V++MKS G+ + +Y + GF K
Sbjct: 320 FENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAK 379
Query: 238 L------GNTDKAYEVDAHMGESGV 256
+ GN ++A E+ M E G+
Sbjct: 380 INDSHQSGNMERAEELVREMEEDGI 404
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 10/138 (7%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178
D+ AL ++ +S G+ L+ Y++L+ S ++ D N+ +R E+
Sbjct: 347 DMRGALSCVEEMKSEGLELTIVTYSILI--------SGFAKINDSHQSGNM--ERAEELV 396
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
++M D +D + S+ ++ + +++K G P + SYG L + K+
Sbjct: 397 REMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKI 456
Query: 239 GNTDKAYEVDAHMGESGV 256
G KA + M G+
Sbjct: 457 GKVAKALSISKEMESCGI 474
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ M++ + P T+ SV + + A+++ K+M FG+ P +RS+ + GFC
Sbjct: 152 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC 211
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
++G ++A ++ M G+ P+ S L+ L K+D L +R
Sbjct: 212 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCF 264
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M V P+ T + D E A LV M S G+ P + +Y L G C
Sbjct: 117 VISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLC 176
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G DKA+EV M + GV P+ + L+ ++++ +I +R
Sbjct: 177 RSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMR 227
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 20/202 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++G V +A D+ + GI + YN ++ C+ G+ S
Sbjct: 417 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK-GYCRSGNVS------------- 462
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+G + Q+M+ +KV P+ T+ ++ + ++ AF L+ M+ + P + +Y
Sbjct: 463 --KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNM 520
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY----EILHRL 286
+ GF GN +A + M G+ P+ +++ V A + + E+L R
Sbjct: 521 LINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580
Query: 287 RTLVRQVSESTFKIIEDWFDSV 308
+ R F I++ +S+
Sbjct: 581 KEKRRAAGTVQFVNIQNSAESL 602
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 62/135 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + +++ M + ++ PN T++ + K E AF + +M + GI P + +Y
Sbjct: 391 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 450
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C+ GN K + M + V P+ + L+ + K+ +++L+ +
Sbjct: 451 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 510
Query: 291 RQVSESTFKIIEDWF 305
Q T+ ++ + F
Sbjct: 511 VQPDVVTYNMLINGF 525
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 54/131 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G +I M+ PN TF S+ + E AF L+ M S GI P YG
Sbjct: 382 VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 441
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK G D A V M GV P S +L A++ ++ H +
Sbjct: 442 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESG 501
Query: 291 RQVSESTFKII 301
VS T+ ++
Sbjct: 502 TTVSIHTYGVV 512
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 48/110 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
IF M+T + PN+ F + + A + + M++ G+ P ++ + C
Sbjct: 247 IFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLC 306
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G D A HM + GV P E L++ + ++ K E++ +
Sbjct: 307 RIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM 356
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ V P S+ + ++ + A +V++M GI P L +Y + G C
Sbjct: 70 LFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLC 129
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K DKA V M E+G P ++L+
Sbjct: 130 KSKAMDKAERVLEQMVEAGTRPNSITYNSLI 160
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
P++ +V ++ G+ P SY ++GF K G DKA+ + M E GV+P+ ++
Sbjct: 30 PDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNS 88
Query: 266 LLKLSVDAKKVDKVYEILHRL 286
++K K++DK I+ ++
Sbjct: 89 IIKELCKMKEMDKAESIVQKM 109
>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 834
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLK 172
C K G E + + +A+ G+ + Y++L+ VC R D NL
Sbjct: 230 CMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVC-------------RRLDLNLAC- 275
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+ ++M P++ T+T+V V + + A L +M S G+P + +
Sbjct: 276 ---ELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLM 332
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
G+C LG+ + A ++ + E GVVP+ S L+ ++K YE+ R++ +
Sbjct: 333 KGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLM 389
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 17/154 (11%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
CSK GD+ +A LY + GI + N LL + ++ NL L+
Sbjct: 370 CSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLL---------------EGFHEQNL-LEH 413
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ +F + + + N T+ + + A +L ++M S GI P L SY +
Sbjct: 414 AYGLFDEAVEHGI-TNVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLIL 472
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G CK G DKAY + + E G+ P + L+
Sbjct: 473 GHCKKGCMDKAYSMLKSILERGLKPNAVTYTLLI 506
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 16/122 (13%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V EA L++ S GIT S YN L+ + CK G + + + +
Sbjct: 443 GKVNEACNLWEKMVSKGITPSLVSYNNLI-LGHCKKGC---------------MDKAYSM 486
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+ ++ + PN T+T + K D E AF + +QM + I P ++ + G K
Sbjct: 487 LKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGK 546
Query: 238 LG 239
G
Sbjct: 547 TG 548
>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 918
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+++ +K G V +AL++ + +GI + Y++L+ NG L
Sbjct: 456 INLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLI-------------NG------FLK 496
Query: 171 LK---RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
LK F +F+ D + P+ + ++ + + A +VKQM+ P R+
Sbjct: 497 LKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQKERYRPTTRT 556
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ P + GF + G +A E+ M SG +P +AL+ V+ +K+ K IL ++
Sbjct: 557 FLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMN 616
Query: 288 TLVRQVSESTFKIIEDWFDSVDAAE 312
+E T+ + + S+ E
Sbjct: 617 VAGVGPNEHTYTTLMQGYASLGDTE 641
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 22/203 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR---- 173
GD +A + + R+ G+ + + Y LL C CK G S + S + R
Sbjct: 638 GDTEKAFQYFSVLRNEGLEIDVYTYEALLKSC-CKSGRMQSALAVTKEMSAKNIPRNTFV 696
Query: 174 ----------------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++ QQM + V P+ T+TS D + A +++++M+
Sbjct: 697 YNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEME 756
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+FGI P L++Y + G+ + +KA M + + P++ L+ +
Sbjct: 757 AFGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAELKPDKAAYHCLMTSLLSRATFA 816
Query: 278 KVYEILHRLRTLVRQVSESTFKI 300
+ Y + L ++ R++ ES +
Sbjct: 817 QSY-VYSGLLSVCREMIESEMTV 838
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 16/118 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L R G+ H Y + C CK G
Sbjct: 701 IDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNAC-CKAGD--------------- 744
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+++ EI Q+M + PN T+T++ PE A ++MK + P +Y
Sbjct: 745 MQKATEIIQEMEAFGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAELKPDKAAY 802
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 7/161 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R EIF M P T+ ++ V K A ++ QM G+ P +Y
Sbjct: 570 MRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTT 629
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ LG+T+KA++ + + G+ + ALLK + ++ + +
Sbjct: 630 LMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMS--A 687
Query: 291 RQVSESTFK---IIEDWFDSVDAAEIGVLNWDVSKVREGIV 328
+ + +TF +I+ W D E L + K EG++
Sbjct: 688 KNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRK--EGVL 726
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ E RL ++G+ + Y+VL+ G D N E+
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLIN------GLCKESKVDEAN----------EL 228
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M+ + PN TFT++ + + A ++ KQM S G P L +Y ++G CK
Sbjct: 229 FNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCK 288
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G+ + + M +G+ P++ + L+ ++ +E R+
Sbjct: 289 KGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRM 337
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 51/116 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R +F + + P+ +F ++ + D + F L M + G+ P + +Y
Sbjct: 152 MRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 211
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK D+A E+ M + G+VP + L+ + VD EI ++
Sbjct: 212 LINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQM 267
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 29/205 (14%)
Query: 64 LTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKL-DMCSKRGDVFE 122
L GLC K+S V+E++ + R P GV L D+ K G V
Sbjct: 212 LINGLC-----KESKVDEANELFNEMLD-------RGLVPNGVTFTTLIDVHCKNGMVDS 259
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A+ +Y S G + YN L+Y CK G LK+ + +M
Sbjct: 260 AMEIYKQMLSQGFSPDLITYNTLIYGL-CKKGD---------------LKQVRALIDEMS 303
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
+ + P++ T+T++ + D E AF+ K+M I +Y + G C+ G D
Sbjct: 304 MNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRAD 363
Query: 243 KAYEVDAHMGESGVVPEEPELSALL 267
A ++ M G+ P+ + ++
Sbjct: 364 DAEKMFREMLSVGLKPDNGTYTMII 388
>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 418
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL + + +G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 227 XLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 17/158 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P GV L D K G V A+ +Y S ++ YN L+Y CK G
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGL-CKKGD------ 291
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
LK+ ++ +MI + P++ T+T++ + D E AF+ K+M I
Sbjct: 292 ---------LKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENI 342
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+Y + G C+ G + A ++ M G+ PE
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPE 380
>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
Length = 981
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+ +L + L D C K ++ + + L+ + ++ I S Y +L+ G ++ NG
Sbjct: 537 PDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYGILIKAY----GKQNDLNG 592
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
F+IF++M K+ N+ T+ + V + + A + QMKS +
Sbjct: 593 ------------AFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIDQMKSQNL 640
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254
P Y + GFCKL T++A + M +S
Sbjct: 641 PINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQS 673
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 92/215 (42%), Gaps = 16/215 (7%)
Query: 111 LDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
LD C K + A R +++ R GI Y++L+ NG + N SN
Sbjct: 470 LDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILV-------------NGIKTNHSNR 516
Query: 170 G-LKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
L R + +Q+ T + P+E + S+ V + + +L ++MK+ I P +
Sbjct: 517 DELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVT 576
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
YG + + K + + A+++ M + + + L+ V ++D+ + + +++
Sbjct: 577 YGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIDQMK 636
Query: 288 TLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSK 322
+ ++ + I F ++ E + +D+ K
Sbjct: 637 SQNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLMK 671
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++ D+ + L + + G++ + YN ++Y CKC S S +
Sbjct: 358 RKSDLTKIESLLWEMKERGLSPNVQIYNTVIYAL-CKCRSAS---------------QAL 401
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ QM+ + DP+ TF ++ + D E A L+++ + P SY P + GF
Sbjct: 402 AVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGF 461
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C G A ++ M G P+ L AL+ V + +VD+ ++ R + RQV
Sbjct: 462 CVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEA--LMVREKMAERQV 517
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+E T+T++ K D + A + M P + +Y + G+C +GNTD A +
Sbjct: 624 PDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVL 683
Query: 248 DAHMGESGVVPEEPELSALL 267
A M G+ P + L+
Sbjct: 684 FASMQSEGLFPNVVHYTVLI 703
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 104/238 (43%), Gaps = 25/238 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL-- 171
CSK GD+ A RL+++ + G+ + + L+ C+ G + + + GL
Sbjct: 368 CSK-GDLAAARRLFEEMQKRGLAADRVTHTALINGL-CRAGELKEADRVLQEMVDKGLDV 425
Query: 172 -------------KRG-----FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
KRG F + +M+ +V PN T+T+++ + D A +L+
Sbjct: 426 DVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELL 485
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+M + G+ + +Y + G CK GN ++A + M +G + + L+ +
Sbjct: 486 HEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKS 545
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSK-VREGIV 328
+ D+ + +L + + S +T+ ++ + F E G +L W + K VR +V
Sbjct: 546 GEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVV 603
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 86/204 (42%), Gaps = 17/204 (8%)
Query: 99 RRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
RR +P V L D K+GDV A L + + G+ L+ + YN L+ CK G+
Sbjct: 456 RRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGL-CKFGN-- 512
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
L++ I +M + T+T++ + + A +++++M
Sbjct: 513 -------------LEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEML 559
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
GI P + +Y + GFC G + ++ M E V P ++L+K K +
Sbjct: 560 DKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMK 619
Query: 278 KVYEILHRLRTLVRQVSESTFKII 301
EI + + +E+T+ I+
Sbjct: 620 STTEIYKGMHSQEVAPNENTYNIL 643
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G+ A + + GI S YNVL+ + C S E G +
Sbjct: 539 IDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLM---NGFCMSGRVEGGKK------- 588
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + M+ V PN T+ S+ + ++ + ++ K M S + P +Y
Sbjct: 589 ------LLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNI 642
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK N +A M E G+ SAL++L KK + ++R
Sbjct: 643 LIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKMR 699
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
S +L H L M + G EA + + R GI YN+L+ S +CG+
Sbjct: 368 STYNLLVHALFMEGRMG---EADDMIKEMRKKGIIPDAITYNILINGYS-RCGNA----- 418
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
K+ F++ +M++ ++P T+TS+ + + + A DL +++ G+
Sbjct: 419 ----------KKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 468
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P + + + G C GN ++A+ + M V P+E + L++ KV++
Sbjct: 469 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 528
Query: 282 ILHRLR 287
+L ++
Sbjct: 529 LLDEMK 534
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL--- 171
S RG++ A R+ D R GI + Y L+ CK G +G + +GL
Sbjct: 273 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS-GMCKEGRLEEASGLFDKMVEIGLVPN 331
Query: 172 -----------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
+R F +M+ + P+ +T+ + + A D++K
Sbjct: 332 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 391
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+M+ GI P +Y + G+ + GN KA+++ M G+ P ++L+
Sbjct: 392 EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 444
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S+ G+ +A L+++ S GI + Y L+YV S R N +K
Sbjct: 413 SRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS------------RRNR----MKEA 456
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++F++++ V P+ F ++ A + E AF L+K+M +PP ++ + G
Sbjct: 457 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 516
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C+ G ++A + M G+ P+ + L+
Sbjct: 517 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 549
>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 804
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 79/196 (40%), Gaps = 25/196 (12%)
Query: 97 KARRESPEGVLRHKLDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155
++R +P+ + L C +RG ++E A+ L+ + G T + YN LL V
Sbjct: 256 RSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALLDV------- 308
Query: 156 ESSENGDRENDSNLGLKR----GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
G R ++ Q+M + P T+ S+ E A D
Sbjct: 309 -------------FGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALD 355
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L QM GI P + +Y L GF K G D A +V M G P +AL+K+
Sbjct: 356 LKTQMVHKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHG 415
Query: 272 DAKKVDKVYEILHRLR 287
+ K ++ ++ ++
Sbjct: 416 NRGKFAEMMKVFDDIK 431
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + EI M + P+ T+ S+ + E+ + + ++++++ G+ P SY
Sbjct: 630 VAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVLEKGMKPDRISYNT 689
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY-EILHRLRTL 289
++ +C+ G +A + + M +S +VP+ + + D ++ E + +R +
Sbjct: 690 VIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTF----IATYAADSMFAEAIDVVRYM 745
Query: 290 VRQ---VSESTFKIIEDWFDSVD 309
++Q ++T+ I DW+ +D
Sbjct: 746 IKQGCKPDQNTYNSIVDWYCKLD 768
>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
Length = 520
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 176 EIFQQMITDKV---DPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYGPA 231
E+F+ M T+ + P T+ S+ +A+AK D E F+L+ M+S G P + +Y
Sbjct: 276 ELFEFMRTEGLTISSPTAKTY-SIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDL 334
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +G D AY V MG +G P+ + L + +K D E+ R+
Sbjct: 335 IEGMCLVGKLDAAYRVLDEMGRAGFPPDIVTYNCFLNVFCSHRKADDALELCERM 389
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G V EA+ L + +G T + +N LL + C SE +
Sbjct: 511 QKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEA----------------L 554
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +++ V + T++SV + ++ E A ++ ++ G+ PK+ Y LF
Sbjct: 555 ELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFAL 614
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK TD+A + A+M +G +P E L++
Sbjct: 615 CKRCETDQAIDFFAYMVSNGCMPNESTYIILIE 647
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 92/242 (38%), Gaps = 38/242 (15%)
Query: 74 SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARS 132
++ S+ ++A + T S S R P V L + K EA+ + D+ R+
Sbjct: 156 TRPSSGASATAEGSATRSPCSTMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRA 215
Query: 133 NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR----GFE------------ 176
G T + YNV++ C+ G R +D+ L R GF+
Sbjct: 216 KGCTPNIVTYNVIING-MCREG--------RVDDAKEILNRLSSYGFQPDIVSYTTVLKG 266
Query: 177 ------------IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
+F +M+ K PNE TF + R E A +++QM G P
Sbjct: 267 LCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPN 326
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ CK G D AY+ +MG G P+ + +L+ A + + E+L
Sbjct: 327 TTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLP 386
Query: 285 RL 286
+
Sbjct: 387 EM 388
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M+ PNE TF + + K E A L++ M +G + +Y + GF
Sbjct: 383 ELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGF 442
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPE---LSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
C G D A E+ ++ P EP + LL A+++D E+L +
Sbjct: 443 CVQGRVDSALELFNNL------PCEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCP 496
Query: 293 VSESTFKIIEDWF 305
++ TF ++ +F
Sbjct: 497 LNAVTFNVLVSFF 509
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 52/119 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+ +MI N TF + K E A +LV QM G P L ++
Sbjct: 480 LDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNT 539
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L G K N+++A E+ + GV + S+++ + + ++ ++LH ++ +
Sbjct: 540 LLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDM 598
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED-PEMAFDLVKQMKSFGIPPKLRSYG 229
++R ++ QQM PN T ++ A+ K+ + A+D + M +G P SY
Sbjct: 308 VERAIQVLQQMSQHGCTPN-TTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYT 366
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C+ G + A E+ M P E + + + +++ +++ +
Sbjct: 367 TVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELM 423
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 90/209 (43%), Gaps = 22/209 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKRGF 175
G + EA ++++ S G+ + Y L+ Y CK G +++ F
Sbjct: 129 GKMMEADKVFNKMFSRGVEPDEVTYTTLIDGY---CKSGE---------------MEKAF 170
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ QM+ + PN T+T++A + A +L+ +M G+ + +Y + G
Sbjct: 171 SLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGL 230
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK GN +A ++ M +G+ P+ + L+ ++ K +E+L + Q +
Sbjct: 231 CKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTV 290
Query: 296 STFKIIEDWFDSVDAAEIG--VLNWDVSK 322
TF ++ + F E G +L W + K
Sbjct: 291 ITFNVLMNGFCMSGMLEDGERLLAWMLEK 319
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 66/135 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ ++ Q+M + PN T+ S+ L + A ++++M + GI P Y
Sbjct: 26 LQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTT 85
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFCKLGN AY++ M + +VP+ +A++ K+ + ++ +++ +
Sbjct: 86 LIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRG 145
Query: 291 RQVSESTFKIIEDWF 305
+ E T+ + D +
Sbjct: 146 VEPDEVTYTTLIDGY 160
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/169 (18%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ + L+L + + G+ + + YN ++ + C S ++ +R +
Sbjct: 24 GELQKVLKLIQEMQMKGLKPNLYTYNSIILLL---CKSGKVDDAER-------------V 67
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++MI + P+ +T++ + + A+ L +M+ I P +Y + G C+
Sbjct: 68 LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G +A +V M GV P+E + L+ + +++K + + +++
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQM 176
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 49/98 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ ++ ++M + P+ TFT++ + A +L+++M G+ P + ++
Sbjct: 236 IRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNV 295
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ GFC G + + A M E G++P ++L+K
Sbjct: 296 LMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMK 333
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ +A L + G+ + +NVL+ + C S E+G+R
Sbjct: 262 MDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLM---NGFCMSGMLEDGER------- 311
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ M+ + PN T+ S+ + + + ++ K M + G+ P +Y
Sbjct: 312 ------LLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNI 365
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESG 255
+ G CK N +A+ + M E G
Sbjct: 366 LIKGHCKARNMKEAWFLHKEMAEKG 390
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ M++ + P T+ SV + + A+++ K+M FG+ P +RS+ + GFC
Sbjct: 213 LVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFC 272
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
++G ++A ++ M G+ P+ S L+ L K+D L +R
Sbjct: 273 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCF 325
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M V P+ T + D E A LV M S G+ P + +Y L G C
Sbjct: 178 VISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLC 237
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G DKA+EV M + GV P+ + L+ ++++ +I +R
Sbjct: 238 RSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMR 288
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 75/172 (43%), Gaps = 16/172 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++G V +A D+ + GI + YN ++ C+ G+ S
Sbjct: 478 IDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK-GYCRSGNVS------------- 523
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+G + Q+M+ +KV P+ T+ ++ + ++ AF L+ M+ + P + +Y
Sbjct: 524 --KGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNM 581
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
+ GF GN +A + M G+ P+ +++ V A + +++
Sbjct: 582 LINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQL 633
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 62/135 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + +++ M + ++ PN T++ + K E AF + +M + GI P + +Y
Sbjct: 452 LDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNS 511
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C+ GN K + M + V P+ + L+ + K+ +++L+ +
Sbjct: 512 IIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK 571
Query: 291 RQVSESTFKIIEDWF 305
Q T+ ++ + F
Sbjct: 572 VQPDVVTYNMLINGF 586
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++++MI K+ PN TF V A D+++ MK +G P + SY + G+C
Sbjct: 210 VYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYC 269
Query: 237 KLGNTDKAYEVDA---HMGESGVVPEEPELSALL 267
KLG K Y+ DA M E+ V P + L+
Sbjct: 270 KLGGNGKMYKADAVLKEMVENDVSPNLTTFNILI 303
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M++ V PN T+ ++ + + A D+ +K G P R Y + +CKLG
Sbjct: 356 KMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLG 415
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
D + + M G+VP+ + L+
Sbjct: 416 KIDDGFALKEEMEREGIVPDVGTYNCLI 443
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++F++M+ V PN ++ S+ A + +M S G+ P L +Y + G
Sbjct: 316 MKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALING 375
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
FCK +A ++ + G VP + L+ K+D
Sbjct: 376 FCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKID 418
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G + EA+ L + +G T + YN LL + C SE +
Sbjct: 535 QKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEA----------------L 578
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++++ V P+ T++S+ + ++ E A + ++ G+ PK Y L
Sbjct: 579 ELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLAL 638
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK NTD A + A+M +G +P E L++ + + + ++L L
Sbjct: 639 CKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLREL 689
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 16/170 (9%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
RG V EAL L DD G S Y VLL CK + G + E
Sbjct: 189 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA-VCK---------------STGFGQAME 232
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M PN T+ + + + A + + ++ S+G P SY L G C
Sbjct: 233 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 292
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ E+ A M E +P E L++ V++ ++L ++
Sbjct: 293 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 342
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M+ PNE TF + + K E A L++QM G + +Y + GF
Sbjct: 407 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 466
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G D A E+ M P + LL +A+++D E+L + +
Sbjct: 467 CVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNV 523
Query: 296 STFKIIEDWF 305
TF ++ +F
Sbjct: 524 VTFNVLVSFF 533
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+ +M+ PN TF + K + A +LV+QM G P L +Y
Sbjct: 504 LDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNT 563
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L G K N+++A E+ + +GV P+ S+++ + +V++ ++ H ++ L
Sbjct: 564 LLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 622
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ PNE TF + R E A +++QM G +
Sbjct: 302 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 361
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G D A++ +MG G P+ + +LK A++ + E+L +
Sbjct: 362 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEM 412
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 26/248 (10%)
Query: 82 SSAPNTGTMSNKSKK-----KARRESPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNG 134
S+A + T S ++ + +R E+P+ L KL ++C +RG +A R+ A +G
Sbjct: 81 SAASSPATTSPRAARLVDRATSRGEAPDVYLCTKLIRNLC-RRGRTSDAARVLRAAERSG 139
Query: 135 ITLSQHHYNVLLYVCSCKCGSE-------SSENGDRENDSNLGLKRGF----------EI 177
+ YN L+ C+ G +S + + + RG +
Sbjct: 140 TAVDVFAYNTLV-AGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSL 198
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
M+ P+ T+T + A +++ +M++ G P + +Y + G C+
Sbjct: 199 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 258
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G D A E + G P+ + +LK AK+ + V E+ + +E T
Sbjct: 259 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVT 318
Query: 298 FKIIEDWF 305
F ++ +F
Sbjct: 319 FDMLVRFF 326
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
S +L H L M + G EA + + R GI YN+L+ S +CG+
Sbjct: 390 STYNLLVHALFMEGRMG---EADDMIKEMRKKGIIPDAITYNILINGYS-RCGNA----- 440
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
K+ F++ +M++ ++P T+TS+ + + + A DL +++ G+
Sbjct: 441 ----------KKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGV 490
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P + + + G C GN ++A+ + M V P+E + L++ KV++
Sbjct: 491 SPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARM 550
Query: 282 ILHRLR 287
+L ++
Sbjct: 551 LLDEMK 556
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S+ G+ +A L+++ S GI + Y L+YV S R N +K
Sbjct: 435 SRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLS------------RRNR----MKEA 478
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++F++++ V P+ F ++ A + E AF L+K+M +PP ++ + G
Sbjct: 479 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQG 538
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C+ G ++A + M G+ P+ + L+
Sbjct: 539 RCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 571
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL--- 171
S RG++ A R+ D R GI + Y L+ CK G +G + +GL
Sbjct: 295 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS-GMCKEGRLEEASGLFDKMVEIGLVPN 353
Query: 172 -----------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
+R F +M+ + P+ +T+ + + A D++K
Sbjct: 354 AVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIK 413
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+M+ GI P +Y + G+ + GN KA+++ M G+ P ++L+
Sbjct: 414 EMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLI 466
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
++ K G +A +++D+ R G++ + YN L+ G E +
Sbjct: 275 MNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLI-------GGLCRE---------MK 318
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ QM +D ++PN T+ ++ A L + +KS G+ P L +Y
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
+ GFC+ G+T A ++ M E G+ P + + L+ + ++K ++
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQL 430
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 21/217 (9%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP V+ L D C K+G++ +A L+ + G+ ++ Y VL+ N
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI-------------N 241
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
G +N K+GFE++++M D V PN T+ V + AF + +M+ G
Sbjct: 242 GLFKNGVK---KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERG 298
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ + +Y + G C+ ++A +V M G+ P + L+ K+ K
Sbjct: 299 VSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Query: 281 EILHRLRTLVRQVSESTFKIIEDWF----DSVDAAEI 313
+ L++ S T+ I+ F D+ AA++
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + +AL L D +S G++ S YN+L+ S C R+ D++ K +
Sbjct: 352 GKLGKALSLCRDLKSRGLSPSLVTYNILV---SGFC---------RKGDTSGAAK----M 395
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M + P++ T+T + ++ E A L M+ G+ P + +Y + GFC
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCI 455
Query: 238 LGNTDKAYEVDAHMGESGVVPEE 260
G ++A + M E P E
Sbjct: 456 KGQMNEASRLFKSMVEKNCEPNE 478
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
+ E +FDL+ ++ FG P + Y + G CK G +KA ++ MG+ G+V E +
Sbjct: 178 EIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYT 237
Query: 265 ALL 267
L+
Sbjct: 238 VLI 240
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G + EA+ L + +G T + YN LL + C SE +
Sbjct: 504 QKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEA----------------L 547
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++++ V P+ T++S+ + ++ E A + ++ G+ PK Y L
Sbjct: 548 ELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLAL 607
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEE 260
CK NTD A + A+M +G +P E
Sbjct: 608 CKRCNTDGAIDFFAYMVSNGCMPNE 632
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 16/170 (9%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
RG V EAL L DD G S Y VLL CK + G + E
Sbjct: 158 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA-VCK---------------STGFGQAME 201
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M PN T+ + + + A + + ++ S+G P SY L G C
Sbjct: 202 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 261
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ E+ A M E +P E L++ V++ ++L ++
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 311
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M+ PNE TF + + K E A L++QM G + +Y + GF
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G D A E+ M P + LL +A+++D E+L + +
Sbjct: 436 CVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNV 492
Query: 296 STFKIIEDWF 305
TF ++ +F
Sbjct: 493 VTFNVLVSFF 502
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+ +M+ PN TF + K + A +LV+QM G P L +Y
Sbjct: 473 LDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNT 532
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L G N+++A E+ + +GV P+ S+++ + +V++ ++ H ++ L
Sbjct: 533 LLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ PNE TF + R E A +++QM G +
Sbjct: 271 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 330
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G D A++ +MG G P+ + +LK A++ + E+L +
Sbjct: 331 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEM 381
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 21/230 (9%)
Query: 95 KKKARRESPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
+ +R E+P+ L KL ++C +RG +A R+ A +G + YN L+ C+
Sbjct: 68 RATSRGEAPDVYLCTKLIRNLC-RRGRTSDAARVLRAAERSGTAVDVFAYNTLV-AGYCR 125
Query: 153 CGSE-------SSENGDRENDSNLGLKRGF----------EIFQQMITDKVDPNEATFTS 195
G +S + + + RG + M+ P+ T+T
Sbjct: 126 YGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV 185
Query: 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255
+ A +++ +M++ G P + +Y + G C+ G D A E + G
Sbjct: 186 LLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 245
Query: 256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
P+ + +LK AK+ + V E+ + +E TF ++ +F
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295
>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 831
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 25/216 (11%)
Query: 59 RFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHK------LD 112
R A TGL S +N S G M +K+ + + +G+ ++ +D
Sbjct: 357 RLKARTETGLSPTVVSYGCLINLYS--KLGKM-DKALQISNEMEDQGIKHNRKTYSMIID 413
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+ GD A +++D + GI YN+L+ CK G +
Sbjct: 414 GYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAF-CKNGQ---------------MN 457
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R E+ +M + P T+T + + D MAF+ V+ MK G P +Y +
Sbjct: 458 RALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIM 517
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G + G D+A + M +GV P E + L++
Sbjct: 518 HGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIE 553
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 20/178 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+++ SK G + +AL++ ++ GI ++ Y++++ YV + GD N
Sbjct: 377 INLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYV----------QLGDTAN--- 423
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
F +F+ M + P+ T+ + A +L+ +M+S PP LR+Y
Sbjct: 424 -----AFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMESGDCPPTLRTY 478
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GF K+G+ A+E M +G P + ++ A ++D+ I+ +
Sbjct: 479 TIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEM 536
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 16/146 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GD+ A D + G S YNV+++ + + G
Sbjct: 482 IDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLA-QAGQ--------------- 525
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R I +M+ V PNE ++T++ D +AF ++K G+ P + +Y
Sbjct: 526 MDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYAS 585
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGV 256
L CK G + A M +GV
Sbjct: 586 LLKACCKAGRMQSTLAITAEMAAAGV 611
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L C K G + L + + + G+ ++ + YN+LL ++ GD S+
Sbjct: 587 LKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILL--------DGWAQRGDMWEASD-- 636
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
I Q+M + + P+ ++TS D A + ++QMK G+ P L++Y
Sbjct: 637 ------IMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTT 690
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ G+ +KA M +G++P++P
Sbjct: 691 LIHGWASASYPEKALICYDEMKSAGMIPDKP 721
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 16/173 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
KRGD A ++ R+ GI + H Y L++ + L+
Sbjct: 204 KRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVA----------------QDLRGAI 247
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++M + V PN AT++ + D E A ++ S Y + +
Sbjct: 248 ACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHNDVIYNNIIHAY 307
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
CK GN ++A + M E G+ + L+ V + VDK + RL+
Sbjct: 308 CKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKA 360
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS--------ESSENGDRENDSNL----- 169
A R Y D R GI + NVL+ G+ + N E DS
Sbjct: 168 AFRFYRDMRKMGIPPTVTSLNVLIKAFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLI 227
Query: 170 -GLKR------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
GL R E+ Q+M T P+ T+TS+ + + A L++ MK I
Sbjct: 228 NGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIE 287
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P + +Y + GFCK G++ +A ++ M + + P S LL + K+++ EI
Sbjct: 288 PNVFTYSSLMDGFCKTGHSSRARDILELMIQKRLRPNMISYSTLLNGLCNEGKINEALEI 347
Query: 283 LHRLR 287
R++
Sbjct: 348 FDRMK 352
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F +M P E ++ SV + V + + AF + M+ GIPP + S +
Sbjct: 133 SIRVFHKMQDFHCKPTEKSYISVLAILVEENQLKSAFRFYRDMRKMGIPPTVTSLNVLIK 192
Query: 234 GFCK-LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
FCK G DKA + M G P+ L+ + + + E+L + T
Sbjct: 193 AFCKNSGTMDKAMHLFRTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMET 248
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
K +++ +M++ ++ P+ T+ + E AF +MK G+ P + ++
Sbjct: 602 FKMARDLYDEMLSKRLSPSVITYFVLIHGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNA 661
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G CK GN D+AY M E G+ P + + L+ D K ++V ++ +
Sbjct: 662 LLHGMCKAGNIDEAYRYLCKMEEEGISPNKYSYTILISKHCDLDKWEEVVKLYKEM 717
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS-ESSENGDRENDSNL---------GL 171
EA L+DD ++ I S YN L+ C+ G+ E ++ E S L L
Sbjct: 428 EASLLFDDLKAGNINPSIVTYNTLIDGL-CESGNLEGAQRLKEEMTSQLIYPDVITYTTL 486
Query: 172 KRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+GF EI+ +M+ + P+ +T+ + D E AF L ++M +
Sbjct: 487 LKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRLHEEMVAEDH 546
Query: 222 -PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
P L Y + G CK+GN +KA E + G+VP+ + +++
Sbjct: 547 HAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVIR 594
>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Glycine max]
Length = 1078
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G A +L D S GI + YNV + +N R++ S +G+
Sbjct: 222 KKGRYKAASQLIDCMASKGIGVDVCTYNVFI------------DNLCRDSRS----AKGY 265
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M + V PNE T+ ++ V + E+A + +M F + P +Y + G
Sbjct: 266 LLLKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGH 325
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C GN +A + M G+ P E ALL + V IL R+R +VS
Sbjct: 326 CTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSH 385
Query: 296 STFKIIED 303
++ + D
Sbjct: 386 ISYTAMID 393
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ FE+ +QM V PN T+ ++ + D A +++ + G P + Y
Sbjct: 822 MKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYIT 881
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G C++GN A ++ M G+ +SA+++ ++KK++ +L
Sbjct: 882 LINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVL 934
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 56/144 (38%), Gaps = 19/144 (13%)
Query: 103 PEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
P G+L L + C K G + EAL Y +G NVL+ C+ G
Sbjct: 453 PNGILYSTLIYNYC-KMGYLKEALNAYAVMNHSGHVADHFTCNVLV-ATFCRYGKLEEAE 510
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+ S +GL DPN TF + D AF + +M SFG
Sbjct: 511 YFMNHMSRMGL---------------DPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFG 555
Query: 221 IPPKLRSYGPALFGFCKLGNTDKA 244
P L +YG L G C G+ ++A
Sbjct: 556 HFPSLFTYGGLLKGLCIGGHINEA 579
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%)
Query: 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251
TF + + + + AF+LVKQM F + P + +Y G + + KA+ V +
Sbjct: 808 TFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVL 867
Query: 252 GESGVVPEEPELSALL 267
ESG VP + L+
Sbjct: 868 LESGSVPTNKQYITLI 883
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 117/268 (43%), Gaps = 43/268 (16%)
Query: 55 IKQNRFSAD-LTTGLCTL------AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVL 107
++ N+ + D L GLC + + K V +S P+T T + EG
Sbjct: 358 VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN---------LIIEGHF 408
Query: 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDREND 166
RH SK+ +A RL + + GI+ + + Y+++++ +C ++G+ E
Sbjct: 409 RHH----SKK----DAFRLLSEMENAGISPNVYTYSIMIHGLC---------QSGEPEKA 451
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
S+L ++M T + PN + + + + +A ++ +M + P L
Sbjct: 452 SDL--------LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLY 503
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR- 285
Y +FG K+G +++ + A M E G++P E S L+ + ++ +++ R
Sbjct: 504 CYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 563
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAEI 313
L T ++ ++E +F S D ++
Sbjct: 564 LDTGLKPNDVIYIDLLESYFKSDDIEKV 591
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 20/201 (9%)
Query: 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE 164
G+L H L S G++ A R+ NG H Y+ L+ S + DRE
Sbjct: 611 GILIHNL---SSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI--------SGLCKTADRE 659
Query: 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
+ F I +M VDPN + ++ D A ++ + + G+ P
Sbjct: 660 --------KAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 711
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+Y + G CK+G+ A+ + M +G+ P+ S L A +++ ++
Sbjct: 712 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 771
Query: 285 RLRTLVRQVSESTFKIIEDWF 305
+ L S S+F + D F
Sbjct: 772 EM-FLRGHASISSFNNLVDGF 791
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
V + +D + G+ EA ++ + + G+ ++ Y+ L+ CK G
Sbjct: 329 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGL-CKMGQ---------- 377
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+ R + +QM+ D P+ T+ + + AF L+ +M++ GI P +
Sbjct: 378 -----MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNV 432
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+Y + G C+ G +KA ++ M G+ P
Sbjct: 433 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKP 465
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 35/260 (13%)
Query: 62 ADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKL-DMCSKRGDV 120
+ L +GLC A +K+ G + SKK P V + L D K GD+
Sbjct: 646 SSLISGLCKTADREKAF---------GILDEMSKKGV---DPNIVCYNALIDGLCKSGDI 693
Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
A +++ + G+ + Y L+ SCK G S+ F ++ +
Sbjct: 694 SYARNVFNSILAKGLVPNCVTYTSLID-GSCKVGDISN---------------AFYLYNE 737
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+ + P+ ++ + + D E A L+++M G + S+ + GFCK G
Sbjct: 738 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGK 796
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
+ ++ + G+VP + ++ +A K+ +V+ I L+ ++ SES +
Sbjct: 797 MQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQ---QKTSESAARH 853
Query: 301 IEDWFDSVDAAEIGVLNWDV 320
F +D G + DV
Sbjct: 854 FSSLF--MDMINQGKIPLDV 871
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 34/176 (19%)
Query: 102 SPEGVLRHKLDMCSKRG------DVFEALRLYDDA-------RSNGITLSQHHYNVLLYV 148
S VL+ ++ + RG + + +R +D A R G L+ YNVL+
Sbjct: 207 SQHSVLQRAVEGSAARGRHGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLI-A 265
Query: 149 CSCKCGSESSENGDRENDSNLGL-KRGF-------------------EIFQQMITDKVDP 188
C+ G+ G +++ + GL GF + +M ++ P
Sbjct: 266 GLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKP 325
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
N + ++ + + + + AF ++K+M + G+ P +Y + G CK+G D+A
Sbjct: 326 NVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRA 381
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G V E+ + + + G+ ++ Y+ L++ +NGD E+ L
Sbjct: 513 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIH--------GYLKNGDLESAEQL----- 559
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
Q+M+ + PN+ + + +D E K M G+ R YG +
Sbjct: 560 ---VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN 616
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
GN + A+ V + + ++G VP+ S+L+ +K + IL +
Sbjct: 617 LSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 668
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F +F+ M+ + + P+ + ++ + + A VK+M+ P R++ P +
Sbjct: 536 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIH 595
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G+ K G+ ++ EV M G VP + L+ V+ ++++K EIL +
Sbjct: 596 GYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSA 655
Query: 294 SESTFKIIEDWFDSV 308
+E T+ I + SV
Sbjct: 656 NEHTYTKIMQGYASV 670
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + G+ H Y + C S+ GD
Sbjct: 734 IDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISAC--------SKAGD-------- 777
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + ++M V PN T+T++ + PE A ++MK+ GI P Y
Sbjct: 778 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHC 837
Query: 231 ALFGFCKLGNTDKAY 245
L + +AY
Sbjct: 838 LLTSLLSRASIAEAY 852
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 22/199 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR---- 173
GD +A + ++ G+ + Y LL C CK G S + S + R
Sbjct: 671 GDTGKAFEYFTRLQNEGLDVDIFTYEALLKAC-CKSGRMQSALAVTKEMSARNIPRNSFV 729
Query: 174 ----------------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++ QQM + V P+ T+TS D A +++M+
Sbjct: 730 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 789
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+ P +++Y + G+ + +KA M G+ P++ LL + +
Sbjct: 790 ALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIA 849
Query: 278 KVYEILHRLRTLVRQVSES 296
+ Y I + T+ +++ E+
Sbjct: 850 EAY-IYSGVMTICKEMVEA 867
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G A +D+A+ TL+ Y ++Y C E +E RE + G+
Sbjct: 388 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEE-GIDAP 446
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I+ M+ +T VA D + + K++K G P + +YG +
Sbjct: 447 IAIYHTMMDG--------YTMVA-------DEKKGLVVFKRLKECGFTPTVVTYGCLINL 491
Query: 235 FCKLGNTDKAYEVDAHMGESGV 256
+ K+G KA EV M E GV
Sbjct: 492 YTKVGKISKALEVSRVMKEEGV 513
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R E+F M P TF + V K E A +++ +M G+ +Y
Sbjct: 603 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTK 662
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ +G+T KA+E + G+ + ALLK + ++ + +
Sbjct: 663 IMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMS--A 720
Query: 291 RQVSESTFK---IIEDWFDSVDAAEIGVLNWDVSKVREGI 327
R + ++F +I+ W D E L + K EG+
Sbjct: 721 RNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKK--EGV 758
>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 463
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+ +Y + G+ Q YN L++ S K G R ++ + LK M
Sbjct: 283 EAVGVYKKMKEEGVEPDQITYNTLIFGLS-KAG--------RVEEARMYLK-------TM 326
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ +P+ AT+TS+ K + A L+++M++ G P +Y L G CK
Sbjct: 327 VDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLM 386
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
DK E+ M SGV E + L++ V + KV + YE+
Sbjct: 387 DKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVF 428
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 22/175 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFE 176
G V EA L + + YN LL ++C CK L +E
Sbjct: 173 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK-----------------DLHVVYE 215
Query: 177 IFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+M D V P+ +FT + ++ A LV ++ + G P Y + GF
Sbjct: 216 FVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGF 275
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
C L +A V M E GV P++ + L+ K +V E L+T+V
Sbjct: 276 CTLSKGSEAVGVYKKMKEEGVEPDQITYNTLI---FGLSKAGRVEEARMYLKTMV 327
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ EA+ L + S ++ Y +L+ + C E +R
Sbjct: 385 KSGNMLEAMGLLSEMESLNLSPDVFTYTILI---NGLCTEERLAEANR------------ 429
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+FQ+M +++ P+ T+ S+ + + E A DL +M S G+ P + ++ + G+
Sbjct: 430 -LFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGY 488
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK+ N A + M G+VP+ + L+
Sbjct: 489 CKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLI 520
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
Y S G+ H Y+VL + C K G S + + ++LG+K I+ I D
Sbjct: 221 YQLMISRGLVPDVHIYSVL-FQCCFKQGFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLC 279
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
N+ E+ E F+L MK G+ P L +Y + G+CK GN +AY
Sbjct: 280 RENKM------------EEAEKMFEL---MKIHGVVPNLYTYSAMIDGYCKTGNLRQAYG 324
Query: 247 VDAHMGESGVVP 258
+ + + ++P
Sbjct: 325 LYKEILVAELLP 336
>gi|255089953|ref|XP_002506898.1| predicted protein [Micromonas sp. RCC299]
gi|226522171|gb|ACO68156.1| predicted protein [Micromonas sp. RCC299]
Length = 634
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 11/174 (6%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SKR V +AL++ +D G+T + Y VLL + +++ G R L R
Sbjct: 70 SKR--VADALKIKEDMERAGLTTTPRTYAVLLNLLV------NTDVGKRRGPKPR-LIRT 120
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++F++M+ + V P A F S+ A + P++ ++M + G+ P +Y L
Sbjct: 121 CKLFEEMLANNVAPPPAAFNSLIVAAKRAKQPDLVARSFQEMVNAGVRPSRETYETTLAA 180
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA--KKVDKVYEILHRL 286
G D A EV M G P + ++LL+ A + ++ +EI H +
Sbjct: 181 VSAGGMADVALEVFGRMRRDGFKPRKSTYNSLLEACASAPQPRAEQAFEIYHAM 234
>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
Length = 1031
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 39/182 (21%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLG---- 170
K+G ALR+ DD NGI + YN+++ +C K + + R + NL
Sbjct: 276 KKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDEC 335
Query: 171 ----LKRGF----------EIFQQMITDKVDPNEATFTSV------------AR------ 198
L GF IF QM+ + P+ AT+T++ AR
Sbjct: 336 SYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEM 395
Query: 199 --LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
V + A ++K M + GI P + +Y + G CK+G + E+ + M +SGV
Sbjct: 396 QITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGV 455
Query: 257 VP 258
+P
Sbjct: 456 LP 457
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 78/188 (41%), Gaps = 18/188 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + L LY D GI Y +L++ C+ G ++
Sbjct: 752 KKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGL-CEYGL---------------IEIAV 795
Query: 176 EIFQQMITDK--VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ ++M+ ++ + P + ++ D + AF+L + MK+ G+ P + +
Sbjct: 796 KFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVR 855
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK G ++A V + + +G+VP + L+ K+D + + + + +V
Sbjct: 856 GLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCGLKV 915
Query: 294 SESTFKII 301
T+ ++
Sbjct: 916 DVVTYNVL 923
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 106/269 (39%), Gaps = 28/269 (10%)
Query: 48 FTKPITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGT----MSNKSKKKARRESP 103
+ IT ++ S C LA V SA G M +++K+ R
Sbjct: 393 YEMQITGVRPREVSKAKQILKCMLADGIDPDVITYSALINGMCKMGMIHETKEILSRMQK 452
Query: 104 EGVLRHKLDMCS------KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
GVL + + + K G EAL+ + D +G+ + +N LL CS
Sbjct: 453 SGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGLVANSVIHNALL--CSFY----- 505
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
RE G+ E F+Q ++ K+ + A+F + + + AF + M
Sbjct: 506 -----RE-----GMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVYDNM 555
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
G PP + +YG L G C+ G+ +A E ++ E +E L+ LL +
Sbjct: 556 VRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEKTLNTLLVGICKHGTL 615
Query: 277 DKVYEILHRLRTLVRQVSESTFKIIEDWF 305
D+ ++ ++ T T+ I+ D F
Sbjct: 616 DEALDLCEKMVTRNILPDTYTYTILLDGF 644
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ +D PN T+T++ ++ A L+ +M+ G+ P +Y
Sbjct: 346 EKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTT 405
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK+GN +AYE+ MG+ G P +A++ +D+ Y +L+++
Sbjct: 406 LIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465
Query: 291 RQVSESTFKII 301
Q T+ I+
Sbjct: 466 LQADGVTYTIL 476
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G + EA RL + +G+ Y +L+ S C R+ D+N
Sbjct: 442 IDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILM---SVHC---------RQADTN-- 487
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
R F +M+ P+ ++T++ ++ + + L ++ S G+ P ++Y
Sbjct: 488 --RSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTS 545
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+C+ GNT A ++ M G P+ AL+ K+D
Sbjct: 546 MICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLD 592
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL-VKQMKSFGIPPKLRSYG 229
+K+ FE+ ++M+ PN T T++ K E AF L +K ++S G P + +Y
Sbjct: 310 IKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYT 369
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+CK ++A + + M E G+VP + L+ + YE++
Sbjct: 370 AMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELM 423
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M+ + PN FT++ + + AF+L+++M G P + ++ + G CK
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCK 341
Query: 238 LGNTDKAYEVDAHMGES-GVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G T+KA+ + + S G P +A++ K+++ +L R++
Sbjct: 342 KGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQ 392
>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
Length = 595
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EA++L ++ + G+T + HY L+ K G+ +N
Sbjct: 112 MDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLK--------GEMQNAQ--- 160
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++F++M+ ++P+ T+ +A FDL+ +M G+ P +YG
Sbjct: 161 -----QVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGI 215
Query: 231 ALFGFCKLGNTDKA 244
A+ GFC+ GN +A
Sbjct: 216 AIVGFCRGGNLSEA 229
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ +D PN T+T++ ++ A L+ +M+ G+ P +Y
Sbjct: 346 EKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTT 405
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK+GN +AYE+ MG+ G P +A++ +D+ Y +L+++
Sbjct: 406 LIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465
Query: 291 RQVSESTFKII 301
Q T+ I+
Sbjct: 466 LQADGVTYTIL 476
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G + EA RL + +G+ Y +L+ S C R+ D+N
Sbjct: 442 IDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILM---SVHC---------RQADTN-- 487
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
R F +M+ P+ ++T++ ++ + + L ++ S G+ P ++Y
Sbjct: 488 --RSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTS 545
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+C+ GNT A ++ M G P+ AL+ K+D
Sbjct: 546 MICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLD 592
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL-VKQMKSFGIPPKLRSYG 229
+K+ FE+ ++M+ PN T T++ K E AF L +K ++S G P + +Y
Sbjct: 310 IKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYT 369
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+CK ++A + + M E G+VP + L+ + YE++
Sbjct: 370 AMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELM 423
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M+ + PN FT++ + + AF+L+++M G P + ++ + G CK
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCK 341
Query: 238 LGNTDKAYEVDAHMGES-GVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G T+KA+ + + S G P +A++ K+++ +L R++
Sbjct: 342 KGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQ 392
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G + EA+ L + +G T + YN LL + C SE +
Sbjct: 504 QKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEA----------------L 547
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++++ V P+ T++S+ + ++ E A + ++ G+ PK Y L
Sbjct: 548 ELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLAL 607
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEE 260
CK NTD A + A+M +G +P E
Sbjct: 608 CKRCNTDGAIDFFAYMVSNGCMPNE 632
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 16/170 (9%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
RG V EAL L DD G S Y VLL CK + G + E
Sbjct: 158 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEA-VCK---------------STGFGQAME 201
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M PN T+ + + + A + + ++ S+G P SY L G C
Sbjct: 202 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLC 261
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ E+ A M E +P E L++ V++ ++L ++
Sbjct: 262 AAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 311
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M+ PNE TF + + K E A L++QM G + +Y + GF
Sbjct: 376 ELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGF 435
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G D A E+ M P + LL +A+++D E+L + +
Sbjct: 436 CVQGRVDSALELFYSM---PCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNV 492
Query: 296 STFKIIEDWF 305
TF ++ +F
Sbjct: 493 VTFNVLVSFF 502
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+ +M+ PN TF + K + A +LV+QM G P L +Y
Sbjct: 473 LDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNT 532
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L G K N+++A E+ + +GV P+ S+++ + +V++ ++ H ++ L
Sbjct: 533 LLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDL 591
Score = 46.2 bits (108), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ PNE TF + R E A +++QM G +
Sbjct: 271 ELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTI 330
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G D A++ +MG G P+ + +LK A++ + E+L +
Sbjct: 331 CKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEM 381
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 21/230 (9%)
Query: 95 KKKARRESPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
+ +R E+P+ L KL ++C +RG +A R+ A +G + YN L+ C+
Sbjct: 68 RATSRGEAPDVYLCTKLIRNLC-RRGRTSDAARVLRAAERSGTAVDVFAYNTLV-AGYCR 125
Query: 153 CGSE-------SSENGDRENDSNLGLKRGF----------EIFQQMITDKVDPNEATFTS 195
G +S + + + RG + M+ P+ T+T
Sbjct: 126 YGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV 185
Query: 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255
+ A +++ +M++ G P + +Y + G C+ G D A E + G
Sbjct: 186 LLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 245
Query: 256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
P+ + +LK AK+ + V E+ + +E TF ++ +F
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFF 295
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++ GD A ++++D S G+ YN+L++ CK G D LG
Sbjct: 234 MDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHA-FCKAG---------RMDKALG 283
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + +++ P T+TS+ V + + A ++ ++K+ G+ P + SY
Sbjct: 284 ------VLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNS 337
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
L G K + A + M +GVVP E +AL + A V+K + + R++
Sbjct: 338 LLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMK 394
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K G++ +AL ++D ++ G+ YN LL S L
Sbjct: 304 LDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLL--------------------SGLA 343
Query: 171 LKRGFE----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
R E + +M+ + V PNE ++T++ D E AF + ++MK + +
Sbjct: 344 KARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIV 403
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
+YG L CK G +A EV + ++G+
Sbjct: 404 AYGALLKACCKSGAMQRAAEVFQQITDAGL 433
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + +I ++M V PN+ + + D AF + + M S G+ P + Y
Sbjct: 208 MAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNI 267
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ FCK G DKA V ++ + ++P +++L V + K E+ R++T
Sbjct: 268 LVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKT 325
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 17/168 (10%)
Query: 111 LDMCSKRG-DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
+D C K G D+ +AL ++D+ + G+ + +N L+ VCS G DS
Sbjct: 277 IDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIAVCS---------RGGLWEDSQ- 326
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+F +M ++ + TF ++ E+A ++ M+ I P + +Y
Sbjct: 327 ------RVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYS 380
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+ KLG ++A + M ESGV P+ + L+ + + D
Sbjct: 381 TMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFD 428
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 125 RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184
R+ + SNG+ + NV++ SS G + D R F +F +MI
Sbjct: 307 RVLKEMESNGVAPNSRTCNVII----------SSMIGQGQTD------RAFRVFCRMIK- 349
Query: 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
+P+ T+T + ++ K + EMA + K MKS P + ++ + G C+ N KA
Sbjct: 350 LCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKA 409
Query: 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH-RLRTLVRQ 292
V M E G+ P L +L + + D V + LH ++ LV++
Sbjct: 410 CVVMEEMIEKGIRPSRITFGRLRQLLIKEGRED-VLKFLHEKMNLLVKE 457
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN FT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
CK G+ + + + M G+ P++ + L+ +D +E HR
Sbjct: 293 CKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFE--HR 340
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + L+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + +E +AL+ SVDA+K+
Sbjct: 326 GCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKM 374
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ + L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGC-CKEGD---------------LDTAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E +QMI + + +E +T++ + A ++++M + G+ P R+Y + F
Sbjct: 338 EHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI-PPKLRSYG 229
+K+ +F +M+ + V PN AT+ ++ ++ K+ E A + ++M G+ P + +Y
Sbjct: 294 VKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYN 353
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +G+ ++A MGE G+ + +++ DA +V+K E+ ++
Sbjct: 354 VVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKM 410
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 17/159 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GDV +A R++ + G+ + YN L+ V C +S EN +
Sbjct: 292 GDVKKAKRVFHEMVKEGVVPNVATYNALIQVL---CKKDSVENA-------------VVV 335
Query: 178 FQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
F++M + V PN T+ V R D E A +++M G+ +++Y + FC
Sbjct: 336 FEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFC 395
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
G +KA EV MG+ +P + L+ KK
Sbjct: 396 DAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKK 434
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA +L++ G S YN+L+ CK G G + +M
Sbjct: 240 EAQKLFNIMVRKGCAPSVRSYNILIK-GHCKSGRIDEAKG---------------LLAEM 283
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ P+ T++++ + P+ A L+++M+S+G+ P L +Y L G CK G+
Sbjct: 284 SHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHL 343
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+A+E+ M ES + P + L++ + K++ E+ L
Sbjct: 344 DEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNL 388
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F+ MI V+PN T+ ++ ++ + A L M G P +RSY + G C
Sbjct: 209 VFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHC 268
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G D+A + A M + P+ S L+K + ++L +R+
Sbjct: 269 KSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLM 328
Query: 297 TFKIIED 303
T+ I+ D
Sbjct: 329 TYSIVLD 335
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ S + + +A++L+D+ G Y+ ++ CK GS +
Sbjct: 54 LNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGL-CKMGSTT------------- 99
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++M PN ++++ + A + + +M + GI P + +Y
Sbjct: 100 --MAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSS 157
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
L GFC LG +++A + M E V+P+ + L+
Sbjct: 158 ILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILV 194
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + M + PN TF+++ +K A L +M G P + +Y +
Sbjct: 31 AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIIN 90
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G CK+G+T A ++ M E G P S ++ K + + E L +
Sbjct: 91 GLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEM 143
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVC--SCKCGSESSENGDRENDSNLGLKRG 174
RG + +A + R G L+ + YN L++ S C K
Sbjct: 172 RGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFC------------------KEA 213
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
E++++M+++ + P+ TF+++ + + + + L+++M+S G+ P + +Y +
Sbjct: 214 LEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRV 273
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
+ G D+AY + M + G P+ + L+ A+K+D + ++++ +
Sbjct: 274 LGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPD 333
Query: 295 ESTFKIIEDWF 305
+ T+ + D F
Sbjct: 334 KVTYVTLLDKF 344
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA L D R G+ + H YN L+ +R +D+
Sbjct: 381 KAGRINEAFDLLDTMRKQGVLPNLHTYNTLI---------SGLLRANRLDDA-------L 424
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F M + V+P T+ + P A + ++MK+ GI P + + +L+
Sbjct: 425 DLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSL 484
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G +A + + SG+ P+ + ++K +VD+ ++L +
Sbjct: 485 AEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEM 535
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + E LYD+ + G + YN+++ N + N
Sbjct: 832 IDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVI------------SNLVKSNR---- 875
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + +++ +++ P TF + + + A ++ M +G P Y
Sbjct: 876 LDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNI 935
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G+ KLG+ D A E M + G+ P+ + L+ + A +VD +L+
Sbjct: 936 LVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLK 992
Score = 42.0 bits (97), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 85/212 (40%), Gaps = 17/212 (8%)
Query: 95 KKKARRESPEGV-LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKC 153
K KAR +P V L ++ G + EA ++++ +S+G+ YN+++ KC
Sbjct: 464 KMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMM-----KC 518
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
S+ + + ++ +M + +P+ S+ E A+ +
Sbjct: 519 YSKVGQ-----------VDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMF 567
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+M+ + P + +Y L G K G KA ++ M G P + LL
Sbjct: 568 CRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKN 627
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+VD ++ +++ T+ + TF I F
Sbjct: 628 DEVDLALKMFYKMTTMNCRPDVLTFNTIIHGF 659
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+I+ +M D P+ TFT + AFDL+ M+ G+ P L +Y + G
Sbjct: 355 KIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGL 414
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
+ D A ++ ++M GV P
Sbjct: 415 LRANRLDDALDLFSNMESLGVEP 437
Score = 38.5 bits (88), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 21/186 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK--------- 172
EAL +Y S G+ S ++ L+ V S K + + G E ++GL+
Sbjct: 212 EALEVYRRMVSEGLKPSLKTFSALM-VASGKRRNIKTVMGLLEEMESMGLRPNIYTYTIC 270
Query: 173 -----------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+ I ++M D P+ T+T + + A L +MKS
Sbjct: 271 IRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSH 330
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P +Y L F G+ DK ++ M G P+ + L+ A ++++ ++
Sbjct: 331 KPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFD 390
Query: 282 ILHRLR 287
+L +R
Sbjct: 391 LLDTMR 396
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N L FE+F +M+ D DPN T++++ ++ E A D++++M GI P + +
Sbjct: 250 NGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHA 309
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAK 274
Y + C G + +A ++ M + G P +AL+ LS D K
Sbjct: 310 YTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGK 357
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 54/113 (47%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G +++ +M+ + PN TF ++ ++ K + A ++ + +G P +Y +
Sbjct: 186 GRDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLII 245
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G CK GN D A+E+ M + G P SAL+ ++++ ++L +
Sbjct: 246 GHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEM 298
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + A+RL + + NG+ L Y L+ S S G L+ F
Sbjct: 459 KQGYMNNAMRLLEMMKGNGLKLDTWTYANLI--------SGFSRGGK--------LEHAF 502
Query: 176 EIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F +M+ + PN T+ ++ L VAK D +A L +M G P +Y +
Sbjct: 503 SLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALA--LFWKMVESGNVPSSGTYNMMIS 560
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
GF K +A M + G++P ++ + + ++I H ++
Sbjct: 561 GFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMK 614
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/139 (20%), Positives = 57/139 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ IF QM+ PN T+ + + + A L++ MK G+ +Y
Sbjct: 428 IQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYAN 487
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GF + G + A+ + M E G+ P +A++ + KVD + ++
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG 547
Query: 291 RQVSESTFKIIEDWFDSVD 309
S T+ ++ F +
Sbjct: 548 NVPSSGTYNMMISGFSKTN 566
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL +++G+ + Y+VL+ CK ES + +D+N
Sbjct: 183 KIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + + PN TFT++ ++A ++ +QM S + P L +Y ++G
Sbjct: 227 ALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ +A ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++ CK
Sbjct: 90 RLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMH-NFCK 148
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G ++ + GL+ P+ +F ++ + D + F L
Sbjct: 149 GGEIXLAQSVFDSITKWGLR---------------PSVVSFNTLMNGYIKIGDLDEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + +Y + G CK D A + M ++G+VP + L+
Sbjct: 194 KSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 NGRVDLAMEIYRQM 267
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 186 RLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGL-CK---ES-----KMDDAN------- 229
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ + A ++ K+M S + P L +Y ++G
Sbjct: 230 ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGL 289
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ +A+++ M G+ P++ + L+ +D +E HR R + +
Sbjct: 290 CKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFE--HRKRMIQENI 345
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI+++M++ + P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 263 AMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLID 322
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 323 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKM 371
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G V +A +L+ ++ G++ + Y + L +G +ND L
Sbjct: 424 QKGKVGDAKKLFGVMKTYGVSANSQIYGIFL-------------DGLCKNDC---LFEAM 467
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F ++ + N ++ + E A++L +++ G+ P + +Y + GF
Sbjct: 468 ELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGF 527
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK+G D A + M E+G P+ + LL + K+++V ++LH++
Sbjct: 528 CKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKM 578
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 18/196 (9%)
Query: 105 GVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
GV+ + + D K G EA L+++ ++ G+ Y+ L++ C + S++
Sbjct: 236 GVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH-- 293
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+F +M+ V P+ TF+ + + A L++ M GI
Sbjct: 294 --------------LFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIV 339
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P L +Y + GFC +G+ + A E+ M G+ P+E + L+ KV + +
Sbjct: 340 PNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNL 399
Query: 283 LHRLRTLVRQVSESTF 298
+ + + + + +T+
Sbjct: 400 YNEMLQVGKSPNVTTY 415
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%)
Query: 207 EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266
E A++L +++ GI P +Y + GFCK G DKA + M E+G P+ S L
Sbjct: 464 ETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSIL 523
Query: 267 LKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
++ ++ K++KV ++LHR+ + + I+ED
Sbjct: 524 MRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVED 560
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ V PN TF+ + + + A L++ M GI P L +Y + GFC
Sbjct: 259 LFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFC 318
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+G+ + A E+ M G P+ + L+ KV++ ++ + +
Sbjct: 319 LVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEM 368
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G+ EA+ L+++ G+ + ++VL+ + CK G
Sbjct: 244 IDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDML-CKEGQ--------------- 287
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + ++ + MI + PN T+TS+ + D A +L M S G P + SY
Sbjct: 288 VIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNM 347
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G+CK ++A ++ M G+ P+ LLK A KVD E+ ++
Sbjct: 348 LINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIK 404
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K G +FEA++L+++ S + L + L+ CK G
Sbjct: 419 LDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGL-CKAGK--------------- 462
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ +E+F+++ + + P+ ++S+ K + A L ++M+ G P L +Y
Sbjct: 463 LETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSI 522
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GF + +K ++ M E V P++ + + + +K + ++L R
Sbjct: 523 LMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRF 578
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+ +Y + G+ Q YN L++ S K G R ++ + LK M
Sbjct: 283 EAVGVYKKMKEEGVEPDQITYNTLIFGLS-KAG--------RVEEARMYLK-------TM 326
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ +P+ AT+TS+ K + A L+++M++ G P +Y L G CK
Sbjct: 327 VDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLM 386
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
DK E+ M SGV E + L++ V + KV + YE+
Sbjct: 387 DKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVF 428
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 22/175 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFE 176
G V EA L + + YN LL ++C CK L +E
Sbjct: 173 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK-----------------DLHVVYE 215
Query: 177 IFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+M D V P+ +FT + ++ A LV ++ + G P Y + GF
Sbjct: 216 FVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGF 275
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
C L +A V M E GV P++ + L+ K +V E L+T+V
Sbjct: 276 CTLSKGSEAVGVYKKMKEEGVEPDQITYNTLI---FGLSKAGRVEEARMYLKTMV 327
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G E +MI PN AT+T++ K A L+ +M + G + Y
Sbjct: 249 FEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNS 308
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK+G D A E+ M E GV P+ ++L++ DA +D+ ++ +R
Sbjct: 309 LIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKG 368
Query: 291 RQVSESTFKIIEDWFDSVD 309
+ T+ + + F D
Sbjct: 369 IVPNSVTYTTLINGFTQAD 387
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 16/146 (10%)
Query: 110 KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
K++ K+G + EA+ ++ + G YN+L+ NG ++
Sbjct: 97 KINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILI-------------NGLCKDAQ-- 141
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L+ G + +M P T+T++ + A D++ +M+ GI P +Y
Sbjct: 142 -LEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYT 200
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESG 255
+ G C G ++A V M G
Sbjct: 201 ALIQGLCDCGEVERAILVLKEMKLRG 226
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 186 VDPNEATFTSVAR---LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
+ PN TF S+ A ED FD +M G+ P SY + G+CK G +
Sbjct: 256 LKPNLVTFNSMVNGMCKAGKMEDARKVFD---EMVREGLAPDGVSYNTLVGGYCKAGCSH 312
Query: 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE 302
+A V A M + G++P+ ++L+ + A +++ ++ ++R Q++E TF +
Sbjct: 313 EALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALI 372
Query: 303 DWF---DSVDAAEIGVLNWDVSKVREGIV 328
D F +D A + V +++ +V
Sbjct: 373 DGFCKKGFLDDALLAVRGMKQCRIKPSVV 401
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
FE+ QQM+ V P+ T++S+ R+ ++ A L K M G+ P +Y +
Sbjct: 454 AFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 513
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G CK GN + A + M ++GV+P+ S L+ + + + ++L +L
Sbjct: 514 GHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 566
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 100/239 (41%), Gaps = 54/239 (22%)
Query: 102 SPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSE 159
+P+GV + L C K G EAL ++ + GI + L++V CK G+
Sbjct: 292 APDGVSYNTLVGGYC-KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHV-MCKAGN---- 345
Query: 160 NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV------------ARLAV-----A 202
L+R + +QM + NE TFT++ A LAV
Sbjct: 346 -----------LERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQC 394
Query: 203 KEDPEM------------------AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
+ P + A +L+ +M++ G+ P + +Y + +CK +T A
Sbjct: 395 RIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSA 454
Query: 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
+E++ M E GV+P+ S+L+++ K++ + + + L Q E T+ + D
Sbjct: 455 FELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 513
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 19/169 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLG------ 170
G V +A +++ + R GI YN+L+ +C K E+ + + N L
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336
Query: 171 --LKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
L GF +F Q+ + + P T+ ++ E+ A DLVK+M+
Sbjct: 337 NILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
I P +Y + F +L +T+KA E+ + M +SG+VP+ S LL
Sbjct: 397 RCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLL 445
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 19/189 (10%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP V+ L D C K G+V A L+ G+ + H Y+VL+ N
Sbjct: 190 SPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLM-------------N 236
Query: 161 GDRENDSNLGLKR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
G + GL+R GF++++ M + PN + + + AF + +M+
Sbjct: 237 GFFKQ----GLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREK 292
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
GI + +Y + G C+ +A ++ + + G+ P + L+ D +K+D
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSA 352
Query: 280 YEILHRLRT 288
+ ++L++
Sbjct: 353 VRLFNQLKS 361
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 52/115 (45%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+GF + + + PN +T++ + +A +L +M G+ P +Y +
Sbjct: 176 KGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLM 235
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
GF K G + +++ +M SG+VP + L+ + VDK +++ +R
Sbjct: 236 NGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMR 290
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 16/195 (8%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C + G + RL G++ + Y L+ C CK D N+ L +
Sbjct: 168 CCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGC-CK-------------DGNVMLAK 213
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F +M + PN T++ + + F + + MK GI P +Y +
Sbjct: 214 --NLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLIS 271
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
+C G DKA++V A M E G+ + L+ KK + +++H++ +
Sbjct: 272 EYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSP 331
Query: 294 SESTFKIIEDWFDSV 308
+ T+ I+ + F V
Sbjct: 332 NIVTYNILINGFCDV 346
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 97 KARRESPEG----VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K+RR P+ +L H L K G E L+ + G L YN+++ CK
Sbjct: 544 KSRRFVPDARSYSILIHGL---IKAGFANETYELFYSMKEQGCVLDTRAYNIVI-DGFCK 599
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
CG + + +++ ++M T +P T+ SV + + A+ L
Sbjct: 600 CGK---------------VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
++ KS I + Y + GF K+G D+AY + + + G+ P ++LL V
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVK 704
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKII 301
A+++++ ++ L ++ T+ I+
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGIL 733
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 26/219 (11%)
Query: 111 LDMCSKRGDVFEALRLYD-----DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+D K G V +A ++Y+ D R+N I + N N R+
Sbjct: 454 IDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIKNFF--------------NHGRKE 499
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
D G +I++ M+ P+ + +PE + +++KS P
Sbjct: 500 D-------GHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDA 552
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
RSY + G K G ++ YE+ M E G V + + ++ KV+K Y++L
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR 324
++T + + T+ + D +D + + ++ +K +
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 651
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+FQQM +P FT++ R + + A L+ +MKS + + Y + F
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K+G D A++ + +G+ P+E ++++ + A ++D+ E+ L
Sbjct: 250 KVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL 299
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/196 (18%), Positives = 81/196 (41%), Gaps = 6/196 (3%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++G +F+++ + + P+ +++ + + ++L MK G R+Y
Sbjct: 534 EKGRAMFEEIKSRRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIV 593
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GFCK G +KAY++ M G P +++ ++D+ Y + ++
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653
Query: 292 QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQ 351
+++ + + D F V + L + E +++ G + W V+ +
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYL------ILEELMQKGLTPNVYTWNSLLDALVKAEE 707
Query: 352 IDENGVCCSCNERLVC 367
I+E VC + L C
Sbjct: 708 INEALVCFQSMKELKC 723
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 52/128 (40%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ GF++ Q M K P + +T++ A +M L +QM+ G P + +
Sbjct: 149 LREGFDVVQNMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTT 208
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GF K G D A + M S + + + + KVD ++ H +
Sbjct: 209 LIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG 268
Query: 291 RQVSESTF 298
+ E T+
Sbjct: 269 LKPDEVTY 276
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 65/169 (38%), Gaps = 17/169 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G EA L + R+ G S YN +L C K G + +
Sbjct: 322 GKFDEAYSLLERQRAKGSIPSVIAYNCIL-TCLRKMGK---------------VDEALRV 365
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M D PN +T+ + + + AF+L M+ G+ P +R+ + CK
Sbjct: 366 FEEMKKDAA-PNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+A + M P+E +L+ +VD Y+I ++
Sbjct: 425 SQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKM 473
Score = 38.9 bits (89), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 67/168 (39%), Gaps = 18/168 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-LKRGFEIFQQ 180
EA L+++A+S I L+ Y+ L+ + +G + + I ++
Sbjct: 640 EAYMLFEEAKSKRIELNVVIYSSLI-----------------DGFGKVGRIDEAYLILEE 682
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
++ + PN T+ S+ V E+ A + MK P +YG + G CK+
Sbjct: 683 LMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRK 742
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+KA+ M + G+ P + ++ A + + + R +
Sbjct: 743 FNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKA 790
>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 517
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K+ +++F++M + N TFTS+ + + + + +A L+ QM G+ P Y
Sbjct: 342 KKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
L CK GN DKAY + M E + P+ ++L+ + +V + ++ ++
Sbjct: 402 LDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKEC 461
Query: 292 QVSESTFKII 301
E TFK I
Sbjct: 462 CPDELTFKFI 471
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 176 EIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYGPALF 233
EI+ MI V P N+A V L A++ ++A+++V +++KS + + Y +
Sbjct: 170 EIWNAMIRSGVSPDNKACAALVVGLCHARK-VDLAYEMVAEEIKSARVKLSIVVYNALIS 228
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
GFCK G +KA + + M + G P+ + LL D
Sbjct: 229 GFCKAGRIEKAEALKSFMSKIGCEPDLVTYNVLLNYYYD 267
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 16/205 (7%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EA +L +D G+ L+ Y LL CK G
Sbjct: 377 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGL-CKAGR--------------- 420
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ E+F+ M+ D + PN+ +T++ + E E A ++KQM I P L YG
Sbjct: 421 MIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGS 480
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
++G C ++ + M G+ + ++ A K ++ +
Sbjct: 481 IIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVG 540
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGV 315
+ + T+ ++ D E+ V
Sbjct: 541 VEATIVTYCVLIDGLCEAGIVELAV 565
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GD+ + RL+ R G++ YN L+ + G E ++L
Sbjct: 237 IDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLI--------DGYGKVGSLEEVASL- 287
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
F +M P+ T+ + E AF+ +MK+ G+ P + +Y
Sbjct: 288 -------FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYST 340
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK G A ++ M +G++P E ++L+ + A + + +++L+ +
Sbjct: 341 LIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDM 396
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP+ V + L D K G + E L+++ + G YN L+ +C C E
Sbjct: 262 SPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLI---NCYCKFEK--- 315
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+ R FE F +M + + PN T++++ + + A L+ M+ G
Sbjct: 316 ----------MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTG 365
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ P +Y + CK GN +A+++ M ++GV +ALL A ++ +
Sbjct: 366 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 425
Query: 281 EILHRL 286
E+ +
Sbjct: 426 EVFRSM 431
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 21/162 (12%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDREN 165
L H+L SK G+ + ++D GI S YNV++ Y+C + GD EN
Sbjct: 201 LLHRL---SKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLC---------KEGDLEN 248
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
L F QM + P+ T+ S+ E L +MK G P +
Sbjct: 249 SRRL--------FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDI 300
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+Y + +CK +A+E + M +G+ P S L+
Sbjct: 301 ITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLI 342
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 51/112 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ F MI + P+ T+ + + D E + L QM+ G+ P + +Y + G+
Sbjct: 216 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 275
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K+G+ ++ + M + G VP+ + L+ +K+ + +E ++
Sbjct: 276 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMK 327
>gi|308810889|ref|XP_003082753.1| pentatricopeptide (ISS) [Ostreococcus tauri]
gi|116061222|emb|CAL56610.1| pentatricopeptide (ISS) [Ostreococcus tauri]
Length = 923
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 90/196 (45%), Gaps = 25/196 (12%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHY-NVLLYVCSCKCGSESSENGDRENDSNLGLK 172
C+ G+ +A+ LY D +NG+ S Y ++++ + K GS+ E
Sbjct: 467 CASNGEDGKAMELYRDMLANGVPPSLRTYVSLIVSLSRSKRGSQVEE------------- 513
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+F I D V+PNE FTS+ V P AFD ++M+ + +YG AL
Sbjct: 514 -AERLFDVAIEDGVEPNEFLFTSLMDAQVKANRPFAAFDTYERMREADVSRTTVTYGCAL 572
Query: 233 FGFCKLGN----TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ + ++AY + M ESGV + + L++ A +++ E+L ++
Sbjct: 573 QACYYVDDEEDGVERAYAILRDMTESGVQMNDWCSNTFLRVISRAGRIE---EMLEEVKK 629
Query: 289 LVRQ---VSESTFKII 301
+VR+ + + TF+ I
Sbjct: 630 IVRRKGMLEQETFEAI 645
>gi|212275500|ref|NP_001130935.1| uncharacterized protein LOC100192040 [Zea mays]
gi|194690482|gb|ACF79325.1| unknown [Zea mays]
Length = 380
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 176 EIFQQMITDKV---DPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYGPA 231
E+F+ M T+ + P T+ S+ +A+AK D E F+L+ M+S G P + +Y
Sbjct: 136 ELFEFMRTEGLTISSPTAKTY-SIMIVALAKADRMEECFELLSDMRSCGCMPDVTTYKDL 194
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +G D AY V MG +G P+ + L + +K D E+ R+
Sbjct: 195 IEGMCLVGKLDAAYRVLDEMGRAGFPPDIVTYNCFLNVFCSHRKADDALELCERM 249
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM G P L +Y ++G
Sbjct: 227 ELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
C+ G+ +A ++ M G+ P++ + L+ S ++ +E+ R+
Sbjct: 287 CRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRM 337
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM+ P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 260 ALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLID 319
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRLRTLVRQ 292
G CK G+ + A+E+ M E + ++ +AL+ L + + VD ++L + ++ +
Sbjct: 320 GSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVD-AEKMLREMLSVGLK 378
Query: 293 VSESTFKIIEDWF 305
T+ +I + F
Sbjct: 379 PENGTYTMIINGF 391
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 74/177 (41%), Gaps = 22/177 (12%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS------ 155
P GV L D K G V AL +Y G + YN L+Y C+ G
Sbjct: 239 PNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGL-CRKGDLKQARD 297
Query: 156 ---ESSENG---DRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
E S G D+ + L L+ FE+ ++MI + + ++ +T++
Sbjct: 298 LIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLC 357
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ A ++++M S G+ P+ +Y + GFCK G+ A ++ M G VP
Sbjct: 358 QEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVP 414
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 94/231 (40%), Gaps = 21/231 (9%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL-------------LYV 148
P+ +L + + + S+ G V EA++++ + G + YN L + +
Sbjct: 90 PDSILLNAMINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKL 149
Query: 149 CSCKCGSESSENGDREND-------SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
E+ + DR + + L+ + + +M+ + P+ T+ ++AR
Sbjct: 150 LEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYA 209
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ E A L+ +M + P R+ G + G+CK GN +A M E GV P
Sbjct: 210 QNGETERAERLILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPV 269
Query: 262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE 312
++L+K +D + V E L + + TF I + + S E
Sbjct: 270 VFNSLIKGYLDTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLME 320
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M+ ++P+ ++ +A+ V P A L+ M +G+ P + + + G+
Sbjct: 324 EIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGW 383
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL--RTLVRQV 293
C G D+A+ + M E G P L+ +AK+ K E+L + R +V ++
Sbjct: 384 CAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPEM 443
Query: 294 SESTFKIIEDWFDSV 308
ST +++ D + ++
Sbjct: 444 --STMQLVADAWRAI 456
>gi|242055653|ref|XP_002456972.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
gi|241928947|gb|EES02092.1| hypothetical protein SORBIDRAFT_03g046570 [Sorghum bicolor]
Length = 821
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 17/154 (11%)
Query: 104 EGVLRH-KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
+GVL + +D K G++ EA++L ++ + G+ + HY L+ + G+
Sbjct: 403 DGVLYNVAMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLI--------NGYCLKGE 454
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
EN +++F+QM+ + P+ T+ ++ FDL++ M G+
Sbjct: 455 TEN--------AWQVFEQMLKANIKPDVVTYNILSSGYSRNGLVMKVFDLLEHMMDQGLE 506
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
P +YG A+ GFC+ GN +A + + E G+
Sbjct: 507 PNSLTYGIAIAGFCRGGNLSEAEVLFNIVEEKGI 540
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 68/159 (42%), Gaps = 17/159 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V +A R++D+ G+ + YN L+ V C +S +N +
Sbjct: 289 GEVKKAKRVFDEMVKEGVAPNVATYNALIQVF---CKKDSVQNA-------------VAV 332
Query: 178 FQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
F++M+ + V PN TF V R D E A +++M G+ +++Y + FC
Sbjct: 333 FEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFC 392
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
G +K EV MG+ +P + L+ KK
Sbjct: 393 DAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKK 431
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI-PPKLRSYG 229
+K+ +F +M+ + V PN AT+ ++ ++ K+ + A + ++M G+ P + ++
Sbjct: 291 VKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVVTFN 350
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +G+ ++A MGE G+ + +++ DA +++K E+ ++
Sbjct: 351 VVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKM 407
>gi|302820653|ref|XP_002991993.1| hypothetical protein SELMODRAFT_42424 [Selaginella moellendorffii]
gi|300140235|gb|EFJ06961.1| hypothetical protein SELMODRAFT_42424 [Selaginella moellendorffii]
Length = 331
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%)
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
E S L L + +F+QMI V PN ATF+ + R + + +L++QM G P
Sbjct: 132 EAMSELQLHGAYLLFEQMIEAGVLPNSATFSFLVRGCFKRGFLDEGSELLRQMVESGCVP 191
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+L ++ + G CK+ + A V M G P+ LL+ K+D+ + +
Sbjct: 192 ELATFNAVIEGLCKVRRVENARWVMNEMASQGCSPDAATHRFLLEALCKMDKLDEAHRHV 251
Query: 284 HRL 286
R+
Sbjct: 252 QRM 254
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 171 LKRGF-----EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
KRGF E+ +QM+ P ATF +V E A ++ +M S G P
Sbjct: 169 FKRGFLDEGSELLRQMVESGCVPELATFNAVIEGLCKVRRVENARWVMNEMASQGCSPDA 228
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
++ L CK+ D+A+ M +G +P+ S L+K + + + I
Sbjct: 229 ATHRFLLEALCKMDKLDEAHRHVQRMIATGCLPDTVTYSFLIKKLCKEGRPMEAHRIFKE 288
Query: 286 LRTLVRQVSESTFKII 301
+ + R+ S + ++
Sbjct: 289 MIGIGREPDSSIYNLL 304
>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
Length = 713
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++ GD A ++++D S G+ YN+L++ CK G D LG
Sbjct: 348 MDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHA-FCKAG---------RMDKALG 397
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + +++ P T+TS+ V + A ++ ++K+ G+ P + SY
Sbjct: 398 ------VLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNS 451
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
L G K + A + M +GVVP E +AL + A V+K + + R++
Sbjct: 452 LLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMK 508
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + +I ++M V PN+ + + D AF + + M S G+ P + +Y
Sbjct: 322 MAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNI 381
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ FCK G DKA V ++ + ++P +++L V + K E+ R++T
Sbjct: 382 LVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKT 439
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 24/150 (16%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K G + +AL ++D ++ G+ YN LL S L
Sbjct: 418 LDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLL--------------------SGLA 457
Query: 171 LKRGFE----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
R E + +M+ + V PNE ++T++ D E AF + ++MK + +
Sbjct: 458 KARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIV 517
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
+YG L CK G +A EV + ++G+
Sbjct: 518 AYGALLKACCKSGAMQRAVEVFQQITDAGL 547
>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 538
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ ++F +M + PN T+ ++ + D EMAF + M GI + +Y
Sbjct: 324 LQEASKVFGEMKALNLPPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNT 383
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK T KA + + + +VP SAL+ + D+ +E+ ++++
Sbjct: 384 LILGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFEL---YKSMI 440
Query: 291 R---QVSESTFKIIEDWF 305
R +E TF I+ F
Sbjct: 441 RSGCHPNEQTFNILISAF 458
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 19/132 (14%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL---- 169
S++GD A R Y+D NGI YN L+ +C ++++ + NL
Sbjct: 354 SQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKENLVPNS 413
Query: 170 --------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
RGFE+++ MI PNE TF + ED + A ++++
Sbjct: 414 STFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNILISAFCKNEDFDGAAQVLRE 473
Query: 216 MKSFGIPPKLRS 227
M IP R+
Sbjct: 474 MVRRSIPLDSRT 485
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
S+ GD E F ++ M+ + + + T+ ++ + A VK++
Sbjct: 354 SQQGDHE--------MAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELD 405
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ P ++ + G C N D+ +E+ M SG P E + L+ + D
Sbjct: 406 KENLVPNSSTFSALIMGQCVRRNADRGFELYKSMIRSGCHPNEQTFNILISAFCKNEDFD 465
Query: 278 KVYEILHRLRTLVRQ 292
++ LR +VR+
Sbjct: 466 GAAQV---LREMVRR 477
>gi|255551050|ref|XP_002516573.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544393|gb|EEF45914.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 396
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+ P+ T+ ++A V E+ +A +++ +M++ G+ P R+ G + G+CK G
Sbjct: 1 MVVSGRQPDVVTYNTIATAYVRNEETNLAEEMISEMQNTGVQPNERTCGTVISGYCKEGR 60
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
+A M E GV P ++L+K VD + V E+L + + TF
Sbjct: 61 IKEALRFVHRMKELGVHPNLVVFNSLIKGFVDIMDRNGVDEVLKLMEEFNVKPDVITFST 120
Query: 301 I 301
I
Sbjct: 121 I 121
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 60/133 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M+ + P+ ++ +A+ V ++PE A L+ M G P + + + G+
Sbjct: 136 EIFDDMMKAGIQPDGHAYSILAKGYVRAQEPEKAEQLLTTMMESGFHPNVVIFTTVISGW 195
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C D A V M E G+ P L+ +AK+ K +IL +R + +
Sbjct: 196 CSTDRMDCAIRVFDKMCEYGISPNLKTFETLIGGFSEAKQPWKAEDILQIMREYNVEPKK 255
Query: 296 STFKIIEDWFDSV 308
ST ++ + + S+
Sbjct: 256 STMLLVAEAWGSI 268
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 80/179 (44%), Gaps = 20/179 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRG 174
++GD+ + L + R+ G++ + YN ++ +C C+ S++S+
Sbjct: 163 RKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASD--------------- 207
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ QM+ + +P+ TF ++ + D A L+++ G+ P SY P + G
Sbjct: 208 --MLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHG 265
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
FC G A ++ M G P+ L AL+ V + +V+ ++ R + RQV
Sbjct: 266 FCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDA--LIVREKMAERQV 322
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVC-------SCKCGSESSENG-DREN 165
++ G++ EA L+ + R G+ S YN L+ +C + + E ++G D +
Sbjct: 341 TRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDV 400
Query: 166 DSNLGLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
+ L RGF E+F +M+ + P+ + + + DP AF + ++
Sbjct: 401 FTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEE 460
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M + G PP L +Y + G KLGN +A E+ M +G+VP+ ++++ + A
Sbjct: 461 MLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGH 520
Query: 276 VDK 278
+ K
Sbjct: 521 LRK 523
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---SESSENGDRENDSNLG-LKRGFEIF 178
LRL D R + I +++ YNV++ +CG + + N ++ G ++ ++
Sbjct: 160 VLRLLRD-RDSSIDVAREVYNVMV-----ECGIRPTVVTYNTMLDSFCKQGKVQEALQLL 213
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
QM PN+ T+ + + E A +L+++M G+ +Y P + G+C+
Sbjct: 214 LQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEK 273
Query: 239 GNTDKAYEVDAHMGESGVVP 258
G D+A + M G VP
Sbjct: 274 GQLDEASRLGEEMLSRGAVP 293
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 46/97 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ +F +M++ + P+ T+T + + ++A +M G+ P + +Y
Sbjct: 521 LRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 580
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G CK+ D+AY+ M G+ P + + L+
Sbjct: 581 LINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILI 617
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K+G V EAL+L + G + YNVL+ + S +G+
Sbjct: 197 LDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLV--------NGLSHSGE-------- 240
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ E+ Q+M+ ++ + T+ + R K + A L ++M S G P L +Y
Sbjct: 241 LEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNT 300
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
++G CK G A ++ M ++P+ + L+
Sbjct: 301 IMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLI 337
Score = 38.9 bits (89), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 57/131 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK E+ ++M+ + + P+ T+TS+ + A + +M S GI P + +Y
Sbjct: 486 LKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTV 545
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ + G A M E GV P +AL+ +K+D+ Y+ ++
Sbjct: 546 LIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFFTEMQAKG 605
Query: 291 RQVSESTFKII 301
++ T+ I+
Sbjct: 606 ISPNKYTYTIL 616
>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
[Vitis vinifera]
gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
Length = 503
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 16/175 (9%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C G + ALR++ + + G + Y L+ C+ G +
Sbjct: 165 LCKNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGL-CRLGK---------------IG 208
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+F++M T P T+TS+ +D + A L+++M S GI P + +Y +
Sbjct: 209 EAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLM 268
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G CK G + +A E+ M +P S L+ K+ + EIL R++
Sbjct: 269 DGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMK 323
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F++M + +P++ ++ +V + V + ++A + M+ GIPP + S + C
Sbjct: 107 VFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALC 166
Query: 237 K-LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
K G D A + M G P+ L+ K+ + E+ + T
Sbjct: 167 KNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMET 219
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178
D+ A+RL ++ S GI + Y+ L+ CK G S R E+
Sbjct: 241 DLDSAIRLLEEMASKGIKPNVFTYSSLMD-GHCKSGCSS---------------RALELL 284
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
M++ + PN T++++ + + A +++ +MK G+ P YG + GFC +
Sbjct: 285 DMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDI 344
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKL------SVDAKKVDKVYEILHRLRTLVRQ 292
+A M G+ P S +++ + + ++ +++ +RT
Sbjct: 345 CKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGIS 404
Query: 293 VSESTFKIIEDWF 305
+ TF + ++F
Sbjct: 405 IDAKTFDSLVNYF 417
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 178 FQQMITDKVDPNEATFTSVARL------AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+M+ + PN T++ R+ + E P AF L M++ GI +++
Sbjct: 354 LDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSL 413
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ FC G+ KA + M G +P+E +A++ D +KV + E++
Sbjct: 414 VNYFCNKGDLHKAAHLVDEMVLDGCIPDEVTWNAVVCAFWDRRKVRESAELVQ 466
>gi|302816300|ref|XP_002989829.1| hypothetical protein SELMODRAFT_42426 [Selaginella moellendorffii]
gi|300142395|gb|EFJ09096.1| hypothetical protein SELMODRAFT_42426 [Selaginella moellendorffii]
Length = 331
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%)
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
E S L L + +F+QMI V PN ATF+ + R + + +L++QM G P
Sbjct: 132 EAMSELQLHGAYLLFEQMIEAGVLPNSATFSFLVRGCFKRGFLDEGSELLRQMVESGCVP 191
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+L ++ + G CK+ + A V M G P+ LL+ K+D+ + +
Sbjct: 192 ELATFNAVIEGLCKVRRVENARWVMNEMASQGCSPDAATHRFLLEALCKMDKLDEAHRHV 251
Query: 284 HRL 286
R+
Sbjct: 252 QRM 254
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 171 LKRGF-----EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
KRGF E+ +QM+ P ATF +V E A ++ +M S G P
Sbjct: 169 FKRGFLDEGSELLRQMVESGCVPELATFNAVIEGLCKVRRVENARWVMNEMASQGCSPDA 228
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
++ L CK+ D+A+ M +G +P+ S L+K
Sbjct: 229 ATHRFLLEALCKMDKLDEAHRHVQRMIATGCLPDTVTYSFLIK 271
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 167 SNLGLKR---GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
SNL KR + F + D+ +P+ +T++ R + A + K MK GI P
Sbjct: 229 SNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLAGIEP 288
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ +Y + C+ G +A++V A M +SG P + L+++ V A + +KV ++
Sbjct: 289 NVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVY 348
Query: 284 HRLRTL 289
++++ L
Sbjct: 349 NQMKKL 354
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA +++ D + GI + + Y++++ C+CG + R
Sbjct: 267 RAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDAL-CRCGQ---------------ISRAH 310
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F M+ PN TF ++ R+ V PE + QMK G P +Y +
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETH 370
Query: 236 CKLGNTDKAYEV 247
C+ N + A +V
Sbjct: 371 CRDENLENAVKV 382
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++ +M+ K +PN T+ + R+ + +M + K M + P + +Y + FC
Sbjct: 417 MYSKMMEAKCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPNVNTYRLLVTMFC 476
Query: 237 KLGNTDKAYEVDAHMGE 253
+G+ + AY++ M E
Sbjct: 477 GMGHWNNAYKLFKEMVE 493
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 64/135 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + ++M+ +KV P+ T++ + E + A ++K+M G P Y
Sbjct: 307 LDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNT 366
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK+GN +A ++ M G+ P L++L++ + ++ + +L +
Sbjct: 367 LIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG 426
Query: 291 RQVSESTFKIIEDWF 305
+++ +F ++ +W
Sbjct: 427 LPINQGSFSMVINWL 441
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 89/211 (42%), Gaps = 19/211 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESS-------ENGDREN 165
C K G V E L ++ GI + +N+LL+ +C+ E+S +NG N
Sbjct: 546 CCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPN 605
Query: 166 DSNLGL-----------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
G+ + G + ++++ K++ N + S+ R + AF L
Sbjct: 606 VYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRD 665
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
MKS G+ +Y + G C +G D A + M + G++P + ++
Sbjct: 666 DMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLG 725
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+++KV +L + + ++ T+ I+ D F
Sbjct: 726 QMNKVNIVLQEMSSHNIHPNKFTYTIMIDGF 756
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 20/188 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGL-KRGF 175
G++ A RL DD +S G+ LS Y+ L++ +C N+GL
Sbjct: 655 GNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLC------------------NIGLVDDAK 696
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ +M + + PN +T++ ++++M S I P +Y + GF
Sbjct: 697 HLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGF 756
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CKLG T +A ++ M E G++P+ +A KV++ +++ + + + E
Sbjct: 757 CKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDE 816
Query: 296 STFKIIED 303
T+ + D
Sbjct: 817 ITYTTLID 824
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 58/135 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK+ +E++ + + P+ F+++ + A L +M+ G+ P + +Y
Sbjct: 237 LKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNN 296
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G D+AY M + V P S + + +K+D+ +L + L
Sbjct: 297 IIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELG 356
Query: 291 RQVSESTFKIIEDWF 305
+E + + D +
Sbjct: 357 FVPNEVVYNTLIDGY 371
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 83/204 (40%), Gaps = 31/204 (15%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR 163
E V +D K G++ EAL++ DD S GI+ + N L+ + +S + G
Sbjct: 361 EVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLI-----QGFCKSDQIGQA 415
Query: 164 ENDSNLGLKRGFEIFQ------------------------QMITDKVDPNEATFTS-VAR 198
EN + RG I Q +M+ + PN+ T+ V+
Sbjct: 416 ENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSG 475
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
L A + E A +L ++ G P + + + G CK GN + ++ M E G+V
Sbjct: 476 LCKAGKQGE-AVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVF 534
Query: 259 EEPELSALLKLSVDAKKVDKVYEI 282
+ + L+ KV + +E+
Sbjct: 535 DRITYNTLISGCCKEGKVKEGFEL 558
>gi|299116865|emb|CBN74977.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 724
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 83/195 (42%), Gaps = 18/195 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+C K G E+ RL D+ G+T S YN + +C G R
Sbjct: 260 IDVCGKWGRWEESFRLLDEMAKAGLTPSVSTYNNAITLC-----------GSRGR----- 303
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK-SFGIPPKLRSYG 229
+ ++ +M+ V PN A++ SV L+++M+ + GI P +RS+
Sbjct: 304 FQLAIDLLDRMLATGVSPNVASYNSVMTACDHMGQWRQVLGLLRRMEETGGIQPSVRSFN 363
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD-KVYEILHRLRT 288
A+ G+ + A + M +G+VP S ++K A +VD V +L +
Sbjct: 364 IAIKAVGDSGDCEAALALFREMSATGIVPNMDSYSTVIKAFNQAGRVDGTVSGLLEEMSE 423
Query: 289 LVRQVSESTFKIIED 303
++ E+ +I D
Sbjct: 424 SMKVNPEADTIVIGD 438
>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1025
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRG 174
K+G ALR+ DD NGI + YN+++ +C K R + L LKR
Sbjct: 276 KKGRCKSALRILDDMEKNGIEADLYTYNIMIDKLCKLK----------RSARAYLLLKRM 325
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
E+ + P+E ++ ++ + +A + QM + P + +Y + G
Sbjct: 326 REV-------NLTPDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDG 378
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEE 260
+C+ G TD+A V M +GV P E
Sbjct: 379 YCRNGRTDEARRVLYEMQITGVRPRE 404
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 59/131 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ +EI M+ + P + ++ D + AF+L + MK+ G+ P +
Sbjct: 787 LQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESS 846
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G ++A V + + +G+VP + L+ K+D + + + +
Sbjct: 847 IVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESCG 906
Query: 291 RQVSESTFKII 301
+V T+ ++
Sbjct: 907 LKVDVVTYNVL 917
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 52/108 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ ++F M + P+ T+ ++ + K + +++++ M G+ PK Y
Sbjct: 752 MSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEILHDMVESGLQPKHTHYIA 811
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
+ C++G+ D A+E+ M GVVP E S++++ KV++
Sbjct: 812 LINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEE 859
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 68/174 (39%), Gaps = 16/174 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + L LY D GI Y +L++ C+ G ++
Sbjct: 678 KKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGL-CEYGL---------------IEIAV 721
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M+ + V P+ F + + K A L MK + P ++Y + G
Sbjct: 722 KFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGL 781
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ ++YE+ M ESG+ P+ AL+ +D +E+ ++ L
Sbjct: 782 IRKNWLQQSYEILHDMVESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKAL 835
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
E RL ++G+ + Y+VL+ + C ++ D E+F +M
Sbjct: 170 EGFRLKSAMLASGVQPDVYTYSVLI---NGLCKESKMDDAD-------------ELFDEM 213
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ + PN TFT++ ++A ++ KQM S + P L +Y ++G CK G+
Sbjct: 214 LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL 273
Query: 242 DKAYEVDAHMGESGVVPEEPELSALL 267
+A+++ M G+ P++ + L+
Sbjct: 274 KQAHDLIDDMSRKGLKPDKITYTTLI 299
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ M G+ P +Y +
Sbjct: 241 AMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLID 300
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G A+E + + + ++ +AL+ SVDA+K+
Sbjct: 301 GCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKM 349
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L DD G+ + Y L+ C CK G L F
Sbjct: 269 KKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGC-CKEGV---------------LVSAF 312
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E +++I + + ++ +T++ + A ++++M S G+ P +Y + F
Sbjct: 313 EHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEF 372
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 373 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 404
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + E RL + ++G + Y+VL+ NG + +
Sbjct: 183 KMGILDEGFRLKNAMHASGAQPDVYTYSVLI-------------NGLCKESK---MDEAH 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQ+ S G+ P L +Y ++GF
Sbjct: 227 ELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGF 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
CK G+ + ++ M G+ P++ + L+ S ++ +E
Sbjct: 287 CKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFE 332
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N L EI++Q+++ + P+ T+ ++ K D + DL+ +M G+ P +
Sbjct: 254 NGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKIT 313
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRL 286
Y + G CK G+ + A+E M E + ++ +AL+ L + + VD ++L +
Sbjct: 314 YTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVD-AEKMLREM 372
Query: 287 RTLVRQVSESTFKIIEDWF 305
++ + T+ I+ + F
Sbjct: 373 LSVGLKPDSGTYTIVMNEF 391
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS----- 155
+P+GV + L + K G+ +AL L+ + NG+ Y L+ CK G+
Sbjct: 305 APDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINT-MCKAGNLNRAM 363
Query: 156 ----ESSENGDRENDSNLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLA 200
+ G R N + + I+ +MI P T+ ++
Sbjct: 364 EFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGH 423
Query: 201 VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
E A L++ M+ G+ P + SY + GFC+ D+A++++A M E GV P+
Sbjct: 424 CVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDA 483
Query: 261 PELSALLKLSVDAKKVDKVYEILHRL 286
S+L++ + +++++ ++ +
Sbjct: 484 ITYSSLIQGLCEQRRLNEACDLFQEM 509
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
R V A ++Y + ++G++L+ YN+L+ C G+ L+ G
Sbjct: 181 RKPVIFAEKVYREMIASGVSLNVFSYNILIR-GFCAAGN---------------LEMGLR 224
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
F++M ++ PN T+ +V + + AF L++ M G+ P L +Y + G C
Sbjct: 225 FFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLC 284
Query: 237 KLGNTDKAYEVDAHMGESGVVPE 259
++G ++ V A M G P+
Sbjct: 285 RVGRIEETSGVLAEMDRKGFAPD 307
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L R F++ +M+ V P+ T++S+ + + A DL ++M + + P +Y
Sbjct: 464 LDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTS 523
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G+ ++A + M + G +P+ + L+
Sbjct: 524 LINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLI 560
>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hederifolia]
Length = 431
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ E RL ++G+ + Y+VL+ CK ES + +D+N
Sbjct: 189 RLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGL-CK---ES-----KMDDAN------- 232
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P L +Y ++G
Sbjct: 233 ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
K G+ +A+++ M G+ P++ L+ +D +E HR R + +
Sbjct: 293 XKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFE--HRKRMIQENI 348
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D + A DL+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKV 276
G CK G+ D A+E M + + ++ +AL+ SVDA+K+
Sbjct: 326 GCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKM 374
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ G+ + Y L+ C CK G L F
Sbjct: 294 KKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGC-CKEGD---------------LDTAF 337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P R+Y + F
Sbjct: 338 EHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEF 397
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ K ++ M G VP + L+
Sbjct: 398 CKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429
>gi|293333002|ref|NP_001168049.1| uncharacterized protein LOC100381779 [Zea mays]
gi|223945693|gb|ACN26930.1| unknown [Zea mays]
gi|414871082|tpg|DAA49639.1| TPA: hypothetical protein ZEAMMB73_603879 [Zea mays]
Length = 582
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ SKRG V EAL ++ R NG + + YN L+ ++ GD N
Sbjct: 410 LNAISKRGMVQEALGIFHSIRENGCQVVRITYNTLI--------DALAKRGDIIN----- 456
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+F +MI D ++P++ T+ S+ K + A +L+ QM + G K ++
Sbjct: 457 ---AMTLFDEMIVDGINPDDVTYGSLIMGFCKKNMAKEALELLNQMLALGFEVKATTFSM 513
Query: 231 ALFGFCKLGNTDKAYEV 247
+ CK + A E+
Sbjct: 514 MIQALCKGCKAEAAAEI 530
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 16/193 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+ K+ AL + D+ G YN L+ SCK G
Sbjct: 270 VDLICKQCGPMRALEVLDELDLEGCQPHVVSYNTLISA-SCKAGC--------------- 313
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK I ++ + ++PN T+ + K DL+ MK P + +Y
Sbjct: 314 LKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTAYNI 373
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ FC+ G+ D+A +V M P+ + LL V + I H +R
Sbjct: 374 FINYFCRYGHLDQAIDVLEMMVSEKCFPDIVTYNTLLNAISKRGMVQEALGIFHSIRENG 433
Query: 291 RQVSESTFKIIED 303
QV T+ + D
Sbjct: 434 CQVVRITYNTLID 446
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 16/188 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + A+++ +D R G + S +N L+ C C + R
Sbjct: 207 GQLSSAMKVLEDMRFTGCSPSGITFNTLI---RCMCSHHLYD-------------RAVSF 250
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+++ + P E T T + L + P A +++ ++ G P + SY + CK
Sbjct: 251 WKEQLKIGWPPYEMTSTLLVDLICKQCGPMRALEVLDELDLEGCQPHVVSYNTLISASCK 310
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G A + + G+ P LL D ++ +V ++L ++ + +
Sbjct: 311 AGCLKDAKLILTRLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTA 370
Query: 298 FKIIEDWF 305
+ I ++F
Sbjct: 371 YNIFINYF 378
>gi|255546465|ref|XP_002514292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546748|gb|EEF48246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 608
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/293 (21%), Positives = 120/293 (40%), Gaps = 40/293 (13%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE----- 156
P+ +L + + + S+ G+V EA++++ + G + +N L+ E
Sbjct: 126 PDSILYNAMINAFSESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKM 185
Query: 157 ----SSENGDREND-----------SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
S + + ND S ++ + + +M+ + P+ T+ +AR
Sbjct: 186 LHLMSLDGSVKPNDRTYNILVRAWCSKKNIEEAWNVLHKMVASGIQPDVVTYNILARAYA 245
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
K + A DL+ +M+ + P R+ G + G+CK GN +A M E GV P
Sbjct: 246 QKGETLRAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLV 305
Query: 262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV-----------DA 310
++L+K +D D V E L + + TF I + + S D
Sbjct: 306 IFNSLIKGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDM 365
Query: 311 AEIGVLNWDV---SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCS 360
A+ G+ D+ S + +G VR G + + L S + ++ + N V C+
Sbjct: 366 AKAGI-EPDIHAFSILAKGYVRAGETENAESVLTS----MAKSGVRPNVVICT 413
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 6/183 (3%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R ++ +M +KV PNE T + + + A V +MK G+ P L + +
Sbjct: 252 RAEDLILEMQYEKVAPNERTCGIIVNGYCKEGNMIEALRFVYRMKELGVHPNLVIFNSLI 311
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
GF + +TD E M E GV P+ S ++ A +DK EI + + +
Sbjct: 312 KGFLDITDTDGVDEALTLMEEYGVKPDVITFSTIMNAWSSAGLMDKCQEIFNDMAKAGIE 371
Query: 293 VSESTFKIIEDWF---DSVDAAEIGVLNWDVSKVREGIVRGG---GGWHGQGWLGSGKWR 346
F I+ + + AE + + S VR +V GW G + + K
Sbjct: 372 PDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGWCSAGKMENAKMV 431
Query: 347 VER 349
E+
Sbjct: 432 YEK 434
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 58/133 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M ++P+ F+ +A+ V + E A ++ M G+ P + + G+
Sbjct: 360 EIFNDMAKAGIEPDIHAFSILAKGYVRAGETENAESVLTSMAKSGVRPNVVICTTIISGW 419
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G + A V M E G+ P L+ +A++ K E+L + +
Sbjct: 420 CSAGKMENAKMVYEKMCEIGISPNLKTFETLIWGYAEARQPGKAEELLQLMEEKGVFPEK 479
Query: 296 STFKIIEDWFDSV 308
ST +++ D + ++
Sbjct: 480 STIQLVADAWRNI 492
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
IF ++ D P T+T++ + E F L+ +++ G+ P Y + F
Sbjct: 80 IFDNLVEDGHRPTLITYTTLVAALTKLKHFESIFLLISKVEENGMKPDSILYNAMINAFS 139
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GN +A ++ M ++G P + L+K +A K ++ ++LH +
Sbjct: 140 ESGNVKEAMKIFQKMKDTGCKPTTSTFNTLIKGYGNAGKPEEGLKMLHLM 189
>gi|224143015|ref|XP_002324819.1| predicted protein [Populus trichocarpa]
gi|222866253|gb|EEF03384.1| predicted protein [Populus trichocarpa]
Length = 552
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M+ ++P+ ++ +A+ V ++PE A +L+ M G P + + + G+
Sbjct: 315 EIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTMIKSGFQPNVVIFTTVISGW 374
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G D A V M + G+ P L+ +A++ K EIL + Q +
Sbjct: 375 CSAGKMDYAVRVFDKMCQRGISPNLKTFETLIWGFAEARQPWKAEEILQIMTEFEVQPEK 434
Query: 296 STFKII-EDW 304
ST ++ E W
Sbjct: 435 STMLLVAEAW 444
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + +MI + P+ T+ ++A K + A ++ +M++ G+ P R+ G
Sbjct: 170 ITEAWNVVYKMIASGIQPDVVTYNTIATAYAQKGALDQAEGVILEMQNNGVQPNERTCGI 229
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK G +A M E G+ P ++L+K V D V E+L+ +
Sbjct: 230 IMSGYCKEGRIREALRFAYRMKELGIHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFG 289
Query: 291 RQVSESTFKII 301
+ TF I
Sbjct: 290 VKPDVITFSTI 300
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
+ PN F S+ + VA D + +++ M+ FG+ P + ++ + + G +K
Sbjct: 255 IHPNLVIFNSLIKGFVAIMDRDGVDEVLNLMEEFGVKPDVITFSTIMNAWSTAGFMEKCR 314
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
E+ M ++G+ P+ S L K V A++ +K E+L +
Sbjct: 315 EIFDDMVKAGIEPDAHAYSILAKGYVRAQEPEKAEELLTTM 355
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 117/268 (43%), Gaps = 43/268 (16%)
Query: 55 IKQNRFSAD-LTTGLCTL------AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVL 107
++ N+ + D L GLC + + K V +S P+T T + EG
Sbjct: 380 VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN---------LIIEGHF 430
Query: 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDREND 166
RH SK+ +A RL + + GI+ + + Y+++++ +C ++G+ E
Sbjct: 431 RHH----SKK----DAFRLLSEMENAGISPNVYTYSIMIHGLC---------QSGEPEKA 473
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
S+L ++M T + PN + + + + +A ++ +M + P L
Sbjct: 474 SDL--------LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLY 525
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR- 285
Y +FG K+G +++ + A M E G++P E S L+ + ++ +++ R
Sbjct: 526 CYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 585
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAEI 313
L T ++ ++E +F S D ++
Sbjct: 586 LDTGLKPNDVIYIDLLESYFKSDDIEKV 613
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 80/201 (39%), Gaps = 20/201 (9%)
Query: 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE 164
G+L H L S G++ A R+ NG H Y+ L+ S + DRE
Sbjct: 633 GILIHNL---SSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLI--------SGLCKTADRE 681
Query: 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
+ F I +M VDPN + ++ D A ++ + + G+ P
Sbjct: 682 --------KAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 733
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+Y + G CK+G+ A+ + M +G+ P+ S L A +++ ++
Sbjct: 734 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 793
Query: 285 RLRTLVRQVSESTFKIIEDWF 305
+ L S S+F + D F
Sbjct: 794 EM-FLRGHASISSFNNLVDGF 813
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 16/153 (10%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
V + +D + G+ EA ++ + + G+ ++ Y+ L+ CK G
Sbjct: 351 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGL-CKMGQ---------- 399
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+ R + +QM+ D P+ T+ + + AF L+ +M++ GI P +
Sbjct: 400 -----MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNV 454
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+Y + G C+ G +KA ++ M G+ P
Sbjct: 455 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKP 487
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 35/260 (13%)
Query: 62 ADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKL-DMCSKRGDV 120
+ L +GLC A +K+ G + SKK P V + L D K GD+
Sbjct: 668 SSLISGLCKTADREKAF---------GILDEMSKKGV---DPNIVCYNALIDGLCKSGDI 715
Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
A +++ + G+ + Y L+ SCK G S+ F ++ +
Sbjct: 716 SYARNVFNSILAKGLVPNCVTYTSLID-GSCKVGDISN---------------AFYLYNE 759
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+ + P+ ++ + + D E A L+++M G + S+ + GFCK G
Sbjct: 760 MLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGK 818
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
+ ++ + G+VP + ++ +A K+ +V+ I L+ ++ SES +
Sbjct: 819 MQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQ---QKTSESAARH 875
Query: 301 IEDWFDSVDAAEIGVLNWDV 320
F +D G + DV
Sbjct: 876 FSSLF--MDMINQGKIPLDV 893
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL-KRGF------ 175
A ++ + R G L+ YNVL+ C+ G+ G +++ + GL GF
Sbjct: 263 AKKVLVEMRERGCGLNTVTYNVLI-AGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALI 321
Query: 176 -------------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ +M ++ PN + ++ + + + + AF ++K+M + G+
Sbjct: 322 NGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQ 381
Query: 223 PKLRSYGPALFGFCKLGNTDKA 244
P +Y + G CK+G D+A
Sbjct: 382 PNKITYDNLVRGLCKMGQMDRA 403
Score = 38.9 bits (89), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G V E+ + + + G+ ++ Y+ L++ +NGD E+ L
Sbjct: 535 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIH--------GYLKNGDLESAEQL----- 581
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
Q+M+ + PN+ + + +D E K M G+ R YG +
Sbjct: 582 ---VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN 638
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
GN + A+ V + + ++G VP+ S+L+ +K + IL +
Sbjct: 639 LSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 690
>gi|242034189|ref|XP_002464489.1| hypothetical protein SORBIDRAFT_01g019340 [Sorghum bicolor]
gi|241918343|gb|EER91487.1| hypothetical protein SORBIDRAFT_01g019340 [Sorghum bicolor]
Length = 585
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ SKRG V EAL ++ R NG + + YN L+ ++ G+ N
Sbjct: 410 LNAISKRGMVEEALGIFHSIRENGCQVVRITYNTLI--------DALAKKGEVIN----- 456
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+F +M D + P++ T+ S+ K + A +L+ QM + G K ++
Sbjct: 457 ---AMTLFDEMTVDGISPDDVTYGSLVMGFCKKNMAKEALELLNQMLALGFEVKATTFSM 513
Query: 231 ALFGFCKLGNTDKAYEV 247
+ CK NT+ A E+
Sbjct: 514 MIQSLCKGCNTEAAAEI 530
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 71/193 (36%), Gaps = 16/193 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+ K+ AL + D+ G YN L+ V SCK G
Sbjct: 270 VDLICKKCGPMRALEVLDELGLEGCQPDVVSYNTLISV-SCKAGC--------------- 313
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK I + + ++PN T+ + K DL+ MK P + +Y
Sbjct: 314 LKNAKLILTHLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTAYNI 373
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ FC+ G D+A +V M P+ + LL V++ I H +R
Sbjct: 374 FINYFCRYGYLDQAIDVLEVMVNEKCFPDIVTYNTLLNAISKRGMVEEALGIFHSIRENG 433
Query: 291 RQVSESTFKIIED 303
QV T+ + D
Sbjct: 434 CQVVRITYNTLID 446
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 23/205 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + A+++ +D R G + S +N L+ C C + R
Sbjct: 207 GQLSSAMKVLEDMRFTGCSPSGITFNTLI---RCMCSHHMYD-------------RAISF 250
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+++ + P E T T + L K P A +++ ++ G P + SY + CK
Sbjct: 251 WKEQLKLGWPPYEMTSTLLVDLICKKCGPMRALEVLDELGLEGCQPDVVSYNTLISVSCK 310
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G A + H+ G+ P LL D ++ +V ++L ++ + +
Sbjct: 311 AGCLKNAKLILTHLSAEGLEPNGTTYCILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTA 370
Query: 298 FKIIEDWF-------DSVDAAEIGV 315
+ I ++F ++D E+ V
Sbjct: 371 YNIFINYFCRYGYLDQAIDVLEVMV 395
>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
Length = 967
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 70/153 (45%), Gaps = 17/153 (11%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+ +L + L D C K ++ + ++L+ + ++ I S Y +L+ G + NG
Sbjct: 518 PDEILYNSLIDACVKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAY----GKMNDLNG 573
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
F +F++M K+ N+ T+ + V + + A ++QMKS +
Sbjct: 574 ------------AFRMFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIEQMKSQNL 621
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254
P Y + GFCKL T++A + + M ++
Sbjct: 622 PINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQN 654
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/201 (19%), Positives = 84/201 (41%), Gaps = 27/201 (13%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSE-------------- 159
C ++ + EA+ L+++ + GI ++ +N LL C KC +
Sbjct: 419 CGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSC-VKCNKMNVAWRYFEEMRKQYGIF 477
Query: 160 ----------NGDRENDSNLG-LKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPE 207
NG + N SN L R + +Q+ T + P+E + S+ V + +
Sbjct: 478 PDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQ 537
Query: 208 MAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
L K+MK+ I P +YG + + K+ + + A+ + M + + + L+
Sbjct: 538 KGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLV 597
Query: 268 KLSVDAKKVDKVYEILHRLRT 288
V ++D+ + + ++++
Sbjct: 598 DACVRNDRLDQALQFIEQMKS 618
>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
Length = 770
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 22/169 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRG 174
+ G + +A+ + D + NGI + YN L+Y +C E+ E
Sbjct: 614 RNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKE--------------- 658
Query: 175 FEIFQQMITDKVDPNEATFTSVAR--LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
IF Q I ++ +T + + + K D + + K+M I P +Y +
Sbjct: 659 --IFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMY--FKEMHYRDIRPNKMTYTTLM 714
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
+ +CK GN ++A+++ M SG+VP+ + L+ + +DK+ E
Sbjct: 715 YAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDKIVE 763
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA ++ +G+ + YN+++ C C + E + D + KRGF+
Sbjct: 480 EATKVLKAMVDSGVEFDRITYNIMIQFC---CKASKMEEAIQLRDDMI--KRGFK----- 529
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
P+ TF + R E L+ QMKS G+ P + +YG + G+CK +
Sbjct: 530 ------PDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDV 583
Query: 242 DKAYEVDAHMGESGVVPEEPELSALL 267
KA + + ++G+ P +AL+
Sbjct: 584 HKANKYLIELIKNGLRPNAVIYNALI 609
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F +F+ M+ + + P+ + ++ + + A VK+M+ P R++ P +
Sbjct: 538 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIH 597
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G+ K G+ ++ EV M G VP + L+ V+ ++++K EIL +
Sbjct: 598 GYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSA 657
Query: 294 SESTFKIIEDWFDSV 308
+E T+ I + SV
Sbjct: 658 NEHTYTKIMQGYASV 672
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + G+ H Y + C S+ GD
Sbjct: 736 IDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISAC--------SKAGD-------- 779
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + ++M V PN T+T++ + PE A ++MK+ GI P Y
Sbjct: 780 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHC 839
Query: 231 ALFGFCKLGNTDKAY 245
L + +AY
Sbjct: 840 LLTSLLSRASIAEAY 854
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 22/199 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR---- 173
GD +A + ++ G+ + Y LL C CK G S + S + R
Sbjct: 673 GDTGKAFEYFTRLQNEGLDVDIFTYEALLKAC-CKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 174 ----------------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++ QQM + V P+ T+TS D A +++M+
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+ P +++Y + G+ + +KA M G+ P++ LL + +
Sbjct: 792 ALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIA 851
Query: 278 KVYEILHRLRTLVRQVSES 296
+ Y I + T+ +++ E+
Sbjct: 852 EAY-IYSGVMTICKEMVEA 869
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G A +D+A+ TL+ Y ++Y C E +E RE + G+
Sbjct: 390 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEE-GIDAP 448
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I+ M+ +T VA D + + K++K G P + +YG +
Sbjct: 449 IAIYHTMMDG--------YTMVA-------DEKKGLVVFKRLKECGFTPTVVTYGCLINL 493
Query: 235 FCKLGNTDKAYEVDAHMGESGV 256
+ K+G KA EV M E GV
Sbjct: 494 YTKVGKISKALEVSRVMKEEGV 515
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R E+F M P TF + V K E A +++ +M G+ +Y
Sbjct: 605 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTK 664
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ +G+T KA+E + G+ + ALLK
Sbjct: 665 IMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLK 702
>gi|115482518|ref|NP_001064852.1| Os10g0476900 [Oryza sativa Japonica Group]
gi|110289255|gb|AAP54273.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|110289256|gb|ABG66138.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113639461|dbj|BAF26766.1| Os10g0476900 [Oryza sativa Japonica Group]
gi|215737151|dbj|BAG96080.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 599
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ SK+G V EAL + R NG L YN L+ + K
Sbjct: 424 LNAISKKGMVEEALGIARCIRENGYKLVLITYNTLIDALAKK----------------AE 467
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ +F +M++D + P++ T+ S+ K+ + A DL+ QM + G K ++
Sbjct: 468 VKKAMVLFDEMLSDGISPDDITYGSLVMGFCKKDMADEALDLLNQMLTLGFEVKTTTFVM 527
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ C+ G + A E+ M +P S+++
Sbjct: 528 VIQALCRDGKVEAAAEITKVMLSKNSIPGNSLCSSIV 564
>gi|403223056|dbj|BAM41187.1| pentatricopeptide repeat containing protein [Theileria orientalis
strain Shintoku]
Length = 1735
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 15/180 (8%)
Query: 89 TMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV 148
+M N K R E + D V A+RL++D + G Q N ++Y
Sbjct: 1335 SMLNAQIGKERERINEIIYGCMFDAYVNNNRVDSAMRLFEDMKVRG----QVKPNTIMYT 1390
Query: 149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
K ++ + L + +IF+ M D+V PN T+ S+ D
Sbjct: 1391 TLIKGYGQNKQ-----------LDKAMKIFRMMQQDQVVPNTVTYNSIIDACARVGDMSG 1439
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A L++ M I P L ++ + G+C + DK++++ + M E G++P+ ++LL+
Sbjct: 1440 ATSLLEDMLMNDIEPDLITFSTIIKGYCVQSDMDKSFQLLSIMYERGIMPDVILYNSLLE 1499
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 79/192 (41%), Gaps = 19/192 (9%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSE---------NGDR 163
MC G +EAL +D ++G L Q Y +L+ CK G + N D
Sbjct: 90 MCL-NGQAYEALLFHDHVVAHGFKLDQVSYAILMN-GLCKMGETRAAMQMLRKTWVNADV 147
Query: 164 ENDSNL--GLKRG------FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
S + L +G + ++ +MI + PN TF+ + + A +L+
Sbjct: 148 VMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAM 207
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M G+ P + +YG + G+C + +KA + M + GV P + ++ K+
Sbjct: 208 MMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKR 267
Query: 276 VDKVYEILHRLR 287
VD+ + +
Sbjct: 268 VDEAMNLFKEMH 279
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/212 (20%), Positives = 87/212 (41%), Gaps = 19/212 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESS-------ENGD 162
+D K V +A RLY + + GI + + +++L+ +C + G ++ + G
Sbjct: 154 IDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGV 213
Query: 163 RENDSNLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ N G + + IF M+ + V+PN + + K+ + A +
Sbjct: 214 KPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMN 273
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L K+M I P + +Y + G CKLG + E+ M G + ++LL
Sbjct: 274 LFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALC 333
Query: 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
+D+ ++ ++ Q + T+ + D
Sbjct: 334 KNHHLDQAITLVKEIKDQGIQPNVCTYTTLID 365
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 99 RRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
++ +P+ V + L D K G + +L L D+ RS G T+ YN LL+ CK
Sbjct: 281 KKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHAL-CK----- 334
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
N L + + +++ + PN T+T++ E A+ + +++
Sbjct: 335 ----------NHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEIL 384
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ G + +Y + G CK G D+A + + M ++ +P+
Sbjct: 385 TEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPD 426
>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 86/209 (41%), Gaps = 20/209 (9%)
Query: 98 ARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGS 155
+RR P V + L D C ++GDV A L + GI + Y L++ +CS
Sbjct: 179 SRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLM 238
Query: 156 ESSENGDRENDSNL------------------GLKRGFEIFQQMITDKVDPNEATFTSVA 197
E+ + DS + +K+ ++Q M+ D + PN TF +
Sbjct: 239 EAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILI 298
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
+ A QM FG+ P + + + G+ K GN +A ++ M + +
Sbjct: 299 DALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKIS 358
Query: 258 PEEPELSALLKLSVDAKKVDKVYEILHRL 286
P+ S L+K + V++ +IL R+
Sbjct: 359 PDVFTYSILIKNACRLGTVEEADDILKRM 387
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 35/176 (19%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ +M K+ P+ T++ + + A E A D++K+M+ G+P Y + G+
Sbjct: 347 DLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGY 406
Query: 236 CKLGNTDKAYEV------DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK GN +KA E+ + M +G+ P+ + +L+ ++AK + V +LH
Sbjct: 407 CKEGNMEKALEIFKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVM-MLH----- 460
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW 345
D ++G++ +V+ +VR G+ G+L S W
Sbjct: 461 ------------------ADMIKMGIVPNEVT---SQVVR--RGYQDNGYLKSALW 493
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 22/166 (13%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
LY++ S + + YNVL+ C C+ G + R + +M+
Sbjct: 173 LYNNMVSRRLFPTVVTYNVLVDAC-CRQGD---------------VLRAKSLISEMVKKG 216
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
++P +T++ ++ A + +QMK G+ P L +Y + G+CK N +A
Sbjct: 217 IEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQAL 276
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ M + G+ P L +DA + KV E+L R V+
Sbjct: 277 HLYQGMLDDGLQPNVVTFGIL----IDA--LCKVRELLAARRFFVQ 316
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++++MI K+ PN TF V A D+++ MK +G P + SY + G+C
Sbjct: 210 LYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYC 269
Query: 237 KLGNTDKAYEVDA---HMGESGVVPEEPELSALL 267
KLG K Y+ DA M E+ V P + L+
Sbjct: 270 KLGGNGKMYKADAVLKEMVENEVSPNLTTFNILI 303
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 160 NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
NG + N++ +G++ +M++ V PN T+ S+ + A D+ +K
Sbjct: 343 NGGKINEA-IGMR------DKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQ 395
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G P R Y + +CKLG D + + M G+VP+ + L+
Sbjct: 396 GTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS-----ESSENGDREND---- 166
K G + EAL ++D + G + YN+L+ CK G E +RE
Sbjct: 378 KNGMMKEALDMFDSVKGQGTRPTTRMYNMLI-DAYCKLGKIDDGFALKEEMEREGIVPDV 436
Query: 167 -----------SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
N ++ ++F Q+ T+K P+ TF + ++ + A L+K+
Sbjct: 437 GTYNCLIAGLCRNGNIEAAKKLFDQL-TNKGLPDLVTFHILMEGYCSRGESRKAAMLLKE 495
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251
M G+ P+ +Y + G+CK GN A + M
Sbjct: 496 MSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQM 531
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 16/166 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G EAL+L + + G+ +Q YN+L+ C E+ E + +
Sbjct: 132 GKTEEALKLLEFLQDGGVKPNQRTYNILVRAW---CNKENME-------------EAWNM 175
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+M+ + P+ T+ ++AR K + A +++ +M + + P R+ + G+CK
Sbjct: 176 VYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTCSIIVNGYCK 235
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
GN A M E GV+P ++L+K +D + V E+L
Sbjct: 236 EGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVL 281
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M+ +++P+ F+ +A+ V +PE A ++ M+ +G+ P + + G+
Sbjct: 314 EIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGW 373
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G + A +V M E GV P L+ +AK+ K E+L + +
Sbjct: 374 CSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKK 433
Query: 296 STFKIIEDWFDSV 308
T ++I D + ++
Sbjct: 434 GTMQLIADAWRAI 446
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 95/214 (44%), Gaps = 32/214 (14%)
Query: 117 RGDVFEA-LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
R +F++ LRL NG+ +N ++ + SE+G+ +K
Sbjct: 60 RQKLFKSILRLISKVEENGMKPDSILFNSII--------NAFSESGN--------MKEAM 103
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F++M P +TF ++ + E A L++ ++ G+ P R+Y + +
Sbjct: 104 KLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAW 163
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS- 294
C N ++A+ + M SG+ P+ + L + + + + E++ L L R+V+
Sbjct: 164 CNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMI--LEMLNRRVTP 221
Query: 295 -ESTFKIIEDWF----DSVDAA-------EIGVL 316
E T II + + + VDA+ E+GVL
Sbjct: 222 NERTCSIIVNGYCKEGNMVDASRFVFRMKELGVL 255
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G V +A+ + S G + YN++L C +E E+ +
Sbjct: 114 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL---KGLCTAERWEDAE------------- 157
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M PN TF + K E A ++++Q+ +G P SY P L F
Sbjct: 158 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAF 217
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK DKA M G P+ + LL + +VD E+LH+L+
Sbjct: 218 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 269
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K E+ +M++ + P+ T++++A ++ E A +++ GI P Y
Sbjct: 294 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 353
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G CK T A ++ A+M +G +P E + L++
Sbjct: 354 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 390
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 47/117 (40%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
G K+ ++ +M P+ T+ V + + A + +K + S+G P SY
Sbjct: 82 GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 141
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C + A E+ MG+ G P + L+ V+ E+L ++
Sbjct: 142 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 198
>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
Length = 927
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F +F+ ++ D + P+ + ++ R + + A VK+M+ P R++ P +
Sbjct: 497 AFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIH 556
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
GF + G+ +A E+ M SG +P +AL+ V+ +++K EIL +
Sbjct: 557 GFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISP 616
Query: 294 SESTFKIIEDWFDSV 308
+E T+ I + S+
Sbjct: 617 NEHTYTTIMHGYASL 631
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 21/183 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS-ESSENGDRENDSNLGLKRGF- 175
GD +A + ++ G+ L + Y LL C CK G +S+ RE S + F
Sbjct: 632 GDTGKAFEYFTKLKTEGLELDVYTYEALLKAC-CKSGRMQSALAVTREMSSQKIPRNTFV 690
Query: 176 ------------------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
E+ QQM + V P+ T+TS D + A +++M+
Sbjct: 691 YNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEME 750
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ P +++Y + G+ + +KA + M +G+ P++ L+ + V
Sbjct: 751 VVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRASVA 810
Query: 278 KVY 280
+ Y
Sbjct: 811 EEY 813
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 80/205 (39%), Gaps = 34/205 (16%)
Query: 33 NCHTYRSLLCWHMHSFT---------KPITDIKQNRFSADLTTGLCTLAFSKKSTVNESS 83
N HTY ++ MH + + T +K D+ T L KS +S+
Sbjct: 617 NEHTYTTI----MHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSA 672
Query: 84 APNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYN 143
T MS S+K R +L +D ++RGDV+EA L + G+ H Y
Sbjct: 673 LAVTREMS--SQKIPRNTFVYNIL---IDGWARRGDVWEAAELMQQMKQEGVQPDIHTYT 727
Query: 144 VLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK 203
+ C CK G ++R + Q+M V PN T+T++
Sbjct: 728 SFINAC-CKAGD---------------MQRATKTIQEMEVVGVKPNIKTYTTLIHGWARA 771
Query: 204 EDPEMAFDLVKQMKSFGIPPKLRSY 228
PE A ++MKS G+ P Y
Sbjct: 772 SLPEKALKCFQEMKSAGLKPDKAVY 796
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
++ GD+ AL ++D R +G + H +N L+ KC E +
Sbjct: 559 ARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQME----------------KA 602
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
EI +M + PNE T+T++ + D AF+ ++K+ G+ + +Y L
Sbjct: 603 VEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKA 662
Query: 235 FCKLGNTDKAYEVDAHMGESGV 256
CK G A V M +
Sbjct: 663 CCKSGRMQSALAVTREMSSQKI 684
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R EIF M P TF ++ V K E A +++ +M GI P +Y
Sbjct: 564 MRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTT 623
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ LG+T KA+E + G+ + ALLK + ++ + + +
Sbjct: 624 IMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSS-- 681
Query: 291 RQVSESTFK---IIEDWF---DSVDAAEI 313
+++ +TF +I+ W D +AAE+
Sbjct: 682 QKIPRNTFVYNILIDGWARRGDVWEAAEL 710
>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic [Vitis vinifera]
Length = 929
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 64/135 (47%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F +F+ ++ D + P+ + ++ R + + A VK+M+ P R++ P +
Sbjct: 518 AFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIH 577
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
GF + G+ +A E+ M SG +P +AL+ V+ +++K EIL +
Sbjct: 578 GFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISP 637
Query: 294 SESTFKIIEDWFDSV 308
+E T+ I + S+
Sbjct: 638 NEHTYTTIMHGYASL 652
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 21/183 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS-ESSENGDRENDSNLGLKRGF- 175
GD +A + ++ G+ L + Y LL C CK G +S+ RE S + F
Sbjct: 653 GDTGKAFEYFTKLKTEGLELDVYTYEALLKAC-CKSGRMQSALAVTREMSSQKIPRNTFV 711
Query: 176 ------------------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
E+ QQM + V P+ T+TS D + A +++M+
Sbjct: 712 YNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQEME 771
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ P +++Y + G+ + +KA + M +G+ P++ L+ + V
Sbjct: 772 VVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTSLLSRASVA 831
Query: 278 KVY 280
+ Y
Sbjct: 832 EEY 834
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 80/205 (39%), Gaps = 34/205 (16%)
Query: 33 NCHTYRSLLCWHMHSFT---------KPITDIKQNRFSADLTTGLCTLAFSKKSTVNESS 83
N HTY ++ MH + + T +K D+ T L KS +S+
Sbjct: 638 NEHTYTTI----MHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSA 693
Query: 84 APNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYN 143
T MS S+K R +L +D ++RGDV+EA L + G+ H Y
Sbjct: 694 LAVTREMS--SQKIPRNTFVYNIL---IDGWARRGDVWEAAELMQQMKQEGVQPDIHTYT 748
Query: 144 VLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK 203
+ C CK G ++R + Q+M V PN T+T++
Sbjct: 749 SFINAC-CKAGD---------------MQRATKTIQEMEVVGVKPNIKTYTTLIHGWARA 792
Query: 204 EDPEMAFDLVKQMKSFGIPPKLRSY 228
PE A ++MKS G+ P Y
Sbjct: 793 SLPEKALKCFQEMKSAGLKPDKAVY 817
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 58/142 (40%), Gaps = 16/142 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
++ GD+ AL ++D R +G + H +N L+ KC E +
Sbjct: 580 ARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQME----------------KA 623
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
EI +M + PNE T+T++ + D AF+ ++K+ G+ + +Y L
Sbjct: 624 VEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKA 683
Query: 235 FCKLGNTDKAYEVDAHMGESGV 256
CK G A V M +
Sbjct: 684 CCKSGRMQSALAVTREMSSQKI 705
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R EIF M P TF ++ V K E A +++ +M GI P +Y
Sbjct: 585 MRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMSLAGISPNEHTYTT 644
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+ LG+T KA+E + G+ + ALLK + ++ + + +
Sbjct: 645 IMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSS-- 702
Query: 291 RQVSESTFK---IIEDWF---DSVDAAEI 313
+++ +TF +I+ W D +AAE+
Sbjct: 703 QKIPRNTFVYNILIDGWARRGDVWEAAEL 731
>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
truncatula]
Length = 603
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
KRG V EA ++ +D NG+ + YN+L+ SE+ +EN +++
Sbjct: 428 KRGRVQEAYKMLEDGFQNGLKPDKFTYNILM-----------SEHCKQEN-----IRQAL 471
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAK---EDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+F +M+ + P+ ++T++ + + ++ EM F+ + GI P ++Y +
Sbjct: 472 ALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFE---EAVRIGIIPTNKTYTSMI 528
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G+C+ GN A + + + G P+ A++
Sbjct: 529 CGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAII 563
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL-VKQMKSFGIPPKLRSYG 229
+K+ FE+ ++M+ PN T TS+ K E AF L +K ++S P + +Y
Sbjct: 291 IKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYT 350
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G+C+ ++A + + M E G+VP + L+ A ++ Y++++ +
Sbjct: 351 AMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLM 407
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ ++ PN T+T++ ++ A L+ +MK G+ P +Y
Sbjct: 327 EKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTT 386
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G CK GN ++AY++ M G P +A++ +V + Y++L
Sbjct: 387 LIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKML 439
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L R + +M + PN T+T++ + E A+DL+ M S G P L +Y
Sbjct: 362 LNRAEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNA 421
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK G +AY++ ++G+ P++ + L+ + + + + +++
Sbjct: 422 IVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKM 477
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G V +A+ + S G + YN++L C +E E+ +
Sbjct: 39 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL---KGLCTAERWEDAE------------- 82
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M PN TF + K E A ++++Q+ +G P SY P L F
Sbjct: 83 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAF 142
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK DKA M G P+ + LL + +VD E+LH+L+
Sbjct: 143 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 194
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K E+ +M++ + P+ T++++A ++ E A +++ GI P Y
Sbjct: 219 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 278
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G CK T A ++ A+M +G +P E + L++
Sbjct: 279 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 315
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 47/117 (40%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
G K+ ++ +M P+ T+ V + + A + +K + S+G P SY
Sbjct: 7 GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 66
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C + A E+ MG+ G P + L+ V+ E+L ++
Sbjct: 67 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 123
>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
Length = 603
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM--KSFGIPPKLRSY 228
L+ E++Q+++ D + P+ T+ +V + + A +L+++M + + P + +Y
Sbjct: 424 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 483
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G K+G ++A+++ A M ++GV+P+ ++L++ A KV + E+L +
Sbjct: 484 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEM 541
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSE---NGDRENDS---------- 167
EAL LY +GI S YN ++ +C K E+ E R +
Sbjct: 426 EALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSM 485
Query: 168 ------NLGLK-RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+G++ R F++ +MI + V P+ T+TS+ + A +L+++M G
Sbjct: 486 IIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAG 545
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
I P +YG + C+ + D A+++ M +G P E A+ K
Sbjct: 546 IFPDDHTYGTLVQILCR-SDVDAAWDLLQEMMRNGHTPNEFTFKAVEK 592
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N + I MI V PN + S+ + D E AF LV++MK+ G+ + +
Sbjct: 487 NGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVT 546
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y L G C+ D+A E+ + G+ P+ + ++ + DK E+L +
Sbjct: 547 YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 605
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+G L D ++ G+ L L+ ++ G+ L + ++LL CK G
Sbjct: 297 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGL-CKDGK------ 349
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+ + ++ + ++ + P + ++ D AF + +QMKS I
Sbjct: 350 ---------VAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHI 400
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P +Y + G CKL KA ++ M +SGV P + L+ A +++K +
Sbjct: 401 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 460
Query: 282 ILHRLR 287
+L ++
Sbjct: 461 VLSDMQ 466
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 20/192 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKR 173
K G + EA+ + DD + + YN ++ Y+ E+GD E +
Sbjct: 486 KNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI----------ESGDTE--------Q 527
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + ++M V + T+ + + + A +L+ +++ G+ P + SY +
Sbjct: 528 AFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS 587
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C G+TDKA E+ M + G+ P L+ A +V + + ++ +
Sbjct: 588 ACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEP 647
Query: 294 SESTFKIIEDWF 305
S S + I+ D +
Sbjct: 648 SSSIYGIMVDAY 659
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 52 ITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHK 110
++D++Q +D+ + G AF K + E+ A + A+ V
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ------VYNSI 515
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GD +A L + +++G++ S YN+LL K SS+ + E
Sbjct: 516 IDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLL-----KGLCRSSQIDEAE------ 564
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
E+ + + P+ ++ ++ K D + A +L+++M +GI P LR+Y
Sbjct: 565 -----ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTY 617
Score = 42.7 bits (99), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ F IF+QM + + P+ T+ ++ E A DLV +M+ G+ P + ++
Sbjct: 385 LRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNT 444
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ + G +K + V + M + G+ + +++K K+ + IL
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAIL 497
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 55/126 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ +M VDP+ TF ++ E F ++ M+ GI + S+G + F
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G +A + M V P ++++ +++ ++ + ++ +++ S
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 544
Query: 296 STFKII 301
T+ ++
Sbjct: 545 VTYNLL 550
>gi|413917024|gb|AFW56956.1| hypothetical protein ZEAMMB73_276172 [Zea mays]
Length = 666
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 104 EGVLRH-KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
+GVL + +D K G++ EA++L + + G+ + HY L+ + G+
Sbjct: 402 DGVLYNIAMDAYCKLGNMNEAVKLLTEMMAGGLVPDKIHYTCLI--------NGYCLKGE 453
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
EN +++F+QM+ + V P+ T+ +A +DL++ M + G+
Sbjct: 454 MEN--------AWQVFEQMLKENVKPDVVTYNILASGYSRNGTVIKVYDLLEHMMNQGLE 505
Query: 223 PKLRSYGPALFGFCKLGNTDKA 244
P +YG A+ FC+ GN +A
Sbjct: 506 PNSLTYGVAITSFCRGGNLSEA 527
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 15/187 (8%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG--IPPKLRSY 228
L+ + + +M+ + P+ T+ ++AR + + A L+ +M+ + + P R+
Sbjct: 200 LEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTC 259
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
G + G+CK GN +A M E GV P ++L+K +D D V E L +
Sbjct: 260 GIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEE 319
Query: 289 LVRQVSESTFKII-------------EDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWH 335
+ T+ I E+ FD + AEI S + +G VR G
Sbjct: 320 FGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDK 379
Query: 336 GQGWLGS 342
+ L S
Sbjct: 380 AEALLNS 386
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++NG+ +N L LK Q +KV PNE T + R + + A + +MK
Sbjct: 230 AQNGETDNAERLILK------MQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMK 283
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ P + + G+ + +TD E M E G+ P+ S ++ + +D
Sbjct: 284 ELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMD 343
Query: 278 KVYEIL 283
EI
Sbjct: 344 NCEEIF 349
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M+ +++P+ ++ +A+ V P+ A L+ M +G+ + + + G+
Sbjct: 347 EIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMTKYGLQANVVIFTTIISGW 406
Query: 236 CKLGNTDKAYEVDAHMGESG 255
C G D A + M E G
Sbjct: 407 CAAGKMDCALRLYEKMNEMG 426
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 79/175 (45%), Gaps = 19/175 (10%)
Query: 116 KRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
KRG A +YD+ ++ G+ + YN+L+ R N + G
Sbjct: 202 KRGRTNMAKEVYDEMLKTYGVKPDTYTYNILI----------------RGFCKNSMVDEG 245
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM--KSFGIPPKLRSYGPAL 232
F F++M + DP+ T+ ++ ++A +LV M K + P + +Y +
Sbjct: 246 FYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLI 305
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G+C+ D+A ++ M G+ P + L+K +A+K DK+ EIL +++
Sbjct: 306 RGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMK 360
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 1/125 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYG 229
K ++F+ M V P TF SV + + + MA ++ +M K++G+ P +Y
Sbjct: 171 FKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYN 230
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GFCK D+ + M P+ + L+ A K+ + +++ +
Sbjct: 231 ILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKK 290
Query: 290 VRQVS 294
+ +S
Sbjct: 291 CKDLS 295
>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic [Vitis vinifera]
Length = 867
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+++++ +S+G+ + YN ++ C + R EIF +M
Sbjct: 238 EAIKVFETMKSSGLKPNLVTYNAVIDAC---------------GKGGVDFNRAAEIFDEM 282
Query: 182 ITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+ + V P+ TF S+ LAV E A +L +M GI + +Y L CK G
Sbjct: 283 LRNGVQPDRITFNSL--LAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGG 340
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
D A+++ + M ++P S ++ A ++D+ + + ++
Sbjct: 341 QMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMK 388
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 17/187 (9%)
Query: 103 PEGVLRHKLDMCSKRGDVFEALR-LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+ + + L RG ++EA R L+ + GI YN LL CK G
Sbjct: 289 PDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAV-CKGGQ------ 341
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+ F+I +M + PN T+++V + A +L +MK I
Sbjct: 342 ---------MDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASI 392
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
SY L + KLG ++A V M SG+ + +ALL K ++V
Sbjct: 393 GLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKR 452
Query: 282 ILHRLRT 288
+ ++
Sbjct: 453 VFEEMKA 459
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 73/179 (40%), Gaps = 17/179 (9%)
Query: 111 LDMCSKRG-DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
+D C K G D A ++D+ NG+ + +N LL VC E++ N
Sbjct: 262 IDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARN--------- 312
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+F +M+ ++ + T+ ++ ++AF ++ +M I P + +Y
Sbjct: 313 -------LFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYS 365
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G+ K G D+A + M + + + + LL + + ++ + + +
Sbjct: 366 TVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMES 424
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 20/171 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL--GLKRGF 175
G V EA+ ++ +++G H Y +++ CG+ + RE ++ L + GF
Sbjct: 156 GMVREAMSVFAGMQADGCAPDPHVYATMVHG---LCGAGRT----REAETLLSDAMAEGF 208
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E PN + ++ D E+A D+ ++M G P +R+Y + GF
Sbjct: 209 E-----------PNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGF 257
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK D+A + + M ++G+VP +AL++ ++D Y +L +
Sbjct: 258 CKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSM 308
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 16/169 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++ ++ EA+ + DD G+ S Y +++ + G++ S+
Sbjct: 394 IDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSK----------- 442
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+I +MI + P+ T+T R + E A ++ M G+ P L +Y
Sbjct: 443 -----KILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNA 497
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
+ G+ LG T +A+ HM +G P E + LL+L + + + +
Sbjct: 498 LICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNI 546
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 18/187 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-LKRGFE 176
G EA L DA + G + YN L+ + N+G L+ +
Sbjct: 191 GRTREAETLLSDAMAEGFEPNVVVYNALI-----------------DGYCNVGDLELAVD 233
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F++M + PN T+T + + A L +M G+ P + +Y + G C
Sbjct: 234 VFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQC 293
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
G D AY + M SG+VP E S L+ ++V + +L L +V+E
Sbjct: 294 SDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEI 353
Query: 297 TFKIIED 303
+ + D
Sbjct: 354 VYTSLID 360
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 167 SNLGL-KRGFEIFQQMITDKVDPNEATFTSVARLAVAKED--------------PEMAF- 210
+NLGL + F F+ M+ + PNE ++T + RL + KE EM +
Sbjct: 503 ANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYL 562
Query: 211 -DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
L+++M +P ++ Y L C++ D+A + M + + P E ++++
Sbjct: 563 HGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSII 620
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G V +A+ + S G + YN++L C +E E+ +
Sbjct: 242 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL---KGLCTAERWEDAE------------- 285
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M PN TF + K E A ++++Q+ +G P SY P L F
Sbjct: 286 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAF 345
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK DKA M G P+ + LL + +VD E+LH+L+
Sbjct: 346 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 397
Score = 45.4 bits (106), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K E+ +M++ + P+ T++++A ++ E A +++ GI P Y
Sbjct: 422 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 481
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G CK T A ++ A+M +G +P E + L++
Sbjct: 482 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 518
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 47/117 (40%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
G K+ ++ +M P+ T+ V + + A + +K + S+G P SY
Sbjct: 210 GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 269
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C + A E+ MG+ G P + L+ V+ E+L ++
Sbjct: 270 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 326
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 65/132 (49%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E++++MI + P+ T++S+ + D + L+K+M++ G+ P + ++ +
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIR 266
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
+ G ++AYE+ M + G P+ + L+ A+K+D E+ +++T +
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKP 326
Query: 294 SESTFKIIEDWF 305
T+ + D F
Sbjct: 327 DRVTYITLLDRF 338
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 33/217 (15%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE-----N 165
+D K G+ EA D R GI + H YN L+ CG D N
Sbjct: 370 VDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLI------CGLLRVHRLDDALELFGN 423
Query: 166 DSNLGLK--------------------RGFEIFQQMITDKVDPN-EATFTSVARLAVAKE 204
+LG+K E F++M T + PN A S+ LA A
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGR 483
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
D E A + +K G+ P +Y + + K+G D+A ++ + M E+G P+ ++
Sbjct: 484 DRE-AKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVN 542
Query: 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+L+ A +VD+ +++ R++ + + + T+ +
Sbjct: 543 SLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTL 579
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 7/164 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ E+F+ M+ PN TF ++ ++ +A ++ +M G P + +Y
Sbjct: 589 IQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 648
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+FG K G +A H + V P+ L LL V A ++ Y+I+ L
Sbjct: 649 IIFGLVKNGQVKEAM-CFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNF--LY 705
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLN---WDVSKVREGIVRGG 331
+ ED S+ AE G+ N + V GI R G
Sbjct: 706 NCADQPANLFWEDLIGSI-LAEAGIDNAVSFSERLVANGICRDG 748
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F++M T + P+ T+ ++ D + +M+ G P + ++ +
Sbjct: 314 EVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDAL 373
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK GN +A++ M + G++P + L+ + ++D E+ + +L + +
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433
Query: 296 STFKIIEDWF----DSVDAAE 312
T+ + D++ DSV A E
Sbjct: 434 YTYIVFIDYYGKSGDSVSALE 454
>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
Length = 1152
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N K ++ +M+ ++ P+ T+ + E AF +MK G+ P + +
Sbjct: 600 NGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 659
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ L+G CK GN D+AY M E G+ P + + L+ + D +K ++V ++ +
Sbjct: 660 HNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEM 718
Score = 46.6 bits (109), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G EA L+DD R+ I S YN L+ C S + E R
Sbjct: 423 KMGKFVEASLLFDDLRAGDIHPSIVTYNTLI---DGLCESGNLEGAQR------------ 467
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M T + P+ T+T++ + V + MA ++ +M GI P +Y G
Sbjct: 468 -LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGE 526
Query: 236 CKLGNTDKAYEVDAHM 251
+LG++DKA+ + M
Sbjct: 527 LRLGDSDKAFRLHEEM 542
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 27/175 (15%)
Query: 118 GDVFEALRLYDDARSNGITLSQHH------YNVLLYVCSCKCGSESSENGDRENDSNLGL 171
GD +A RL+++ + + HH YNV + CK G+ L
Sbjct: 530 GDSDKAFRLHEE-----MVATDHHAPDLTIYNVRIDGL-CKVGN---------------L 568
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ E +++ + P+ T+T+V R + +MA +L +M + P + +Y
Sbjct: 569 VKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVL 628
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G K G ++A++ M + GV P +ALL A +D+ Y L ++
Sbjct: 629 IYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKM 683
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI PN TF ++ K E A +L+KQM G P L SY + G
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G T++A E+ M G+ P S++ +V+KV ++ ++
Sbjct: 507 GKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M+ PN TF ++ E +++ QM G P +R Y + G
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ + A E+ M G+ P + +LK A++ + E+L + + +
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356
Query: 296 STFKIIEDWF 305
TF I+ D+F
Sbjct: 357 VTFNILVDFF 366
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI PN TF ++ K E A +L+KQM G P L SY + G
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G T++A E+ M G+ P S++ +V+KV ++ ++
Sbjct: 507 GKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M+ PN TF ++ E +++ QM G P +R Y + G
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ + A E+ M G+ P + +LK A++ + E+L + + +
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356
Query: 296 STFKIIEDWF 305
TF I+ D+F
Sbjct: 357 VTFNILVDFF 366
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F M+ DPN T++S+ + ++A ++ +M P + Y
Sbjct: 430 LDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTE 489
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G CK+G TD+AY++ M E G P +A++ + +V+K E+L ++ +
Sbjct: 490 MIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSS 547
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + + ++M++ P+ +T++ V E AF L ++MK GI P + Y
Sbjct: 203 FEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTT 262
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK---VYEIL 283
+ FCK G ++A M G P +AL+ + ++KV K VYE++
Sbjct: 263 LIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMM 318
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V +A +L+ + + NGI + Y L+ CK G +++ F
Sbjct: 238 VEKAFQLFQEMKRNGIAPDVYVYTTLIDS-FCKAGF---------------IEQARNWFD 281
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M D PN T+T++ + A ++ + M S G P + +Y + G CK G
Sbjct: 282 EMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAG 341
Query: 240 NTDKAYEVDAHMGESGV-VPE 259
+KA ++ M + V +P+
Sbjct: 342 KIEKASQIYKIMKKENVEIPD 362
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%)
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
+PN T+ ++ + A DL+K M G P Y + G CK G D+A E
Sbjct: 376 EPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQE 435
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
V M E G P S+L+ K++D ++L ++
Sbjct: 436 VFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKM 475
>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
Length = 287
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 78/185 (42%), Gaps = 19/185 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C + AL L + RS GI + H Y+ L+ VC + N+ +L
Sbjct: 7 ISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCI------------KANELDLA 54
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++++QM+ + PN T+ + + +K L + GI ++R+Y
Sbjct: 55 Q----DVYKQMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNT 110
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ K G ++A +V M +GV P +AL+ +V+K +I R ++
Sbjct: 111 VISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDI---FRDMI 167
Query: 291 RQVSE 295
R+ E
Sbjct: 168 RRGCE 172
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C+K G +AL++Y+ + G+ S Y L+ S + G E
Sbjct: 112 ISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALI--------SAYGKKGQVE------ 157
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ +IF+ MI + N T++S+ EMA +L +M P + +Y
Sbjct: 158 --KALDIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNS 215
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+ +KA E+ M G P+ L+
Sbjct: 216 LIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLI 252
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 16/205 (7%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ EA +L +D G+ L+ Y LL CK G
Sbjct: 436 IDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGL-CKAGR--------------- 479
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ E+F+ M+ D + PN+ +T++ + E E A ++KQM I P L YG
Sbjct: 480 MIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGS 539
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
++G C ++ + M G+ + ++ A K ++ +
Sbjct: 540 IIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVG 599
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGV 315
+ + T+ ++ D E+ V
Sbjct: 600 VEATIVTYCVLIDGLCKAGIVELAV 624
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 40/208 (19%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDREN 165
L H+L SK G+ + ++D GI S YNV++ Y+C + GD EN
Sbjct: 260 LLHRL---SKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLC---------KEGDLEN 307
Query: 166 DSNL---------------------------GLKRGFEIFQQMITDKVDPNEATFTSVAR 198
L L+ +F +M P+ T+ +
Sbjct: 308 SRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLIN 367
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
E AF+ +MK+ G+ P + +Y + FCK G A ++ M +G++P
Sbjct: 368 CYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLP 427
Query: 259 EEPELSALLKLSVDAKKVDKVYEILHRL 286
E ++L+ + A + + +++L+ +
Sbjct: 428 NEFTYTSLIDANCKAGNLTEAWKLLNDM 455
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP+ V + L D K G + E L+++ + G YN L+ +C C E
Sbjct: 321 SPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLI---NCYCKFEK--- 374
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+ R FE F +M + + PN T++++ + + A L M+ G
Sbjct: 375 ----------MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTG 424
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ P +Y + CK GN +A+++ M ++GV +ALL A ++ +
Sbjct: 425 LLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAE 484
Query: 281 EILHRL 286
E+ +
Sbjct: 485 EVFRSM 490
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 58/130 (44%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ F MI + P+ T+ + + D E + L QM+ G+ P + +Y + G+
Sbjct: 275 KFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGY 334
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
K+G+ ++ + M + G VP+ + L+ +K+ + +E ++ + +
Sbjct: 335 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 394
Query: 296 STFKIIEDWF 305
T+ + D F
Sbjct: 395 VTYSTLIDAF 404
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 16/158 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C K GD+ AL + GI L + VL+ S C + +R
Sbjct: 324 IDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLI---SGLCRDGRVHDAER------- 373
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + M++ P++ T+T V K + M F L+K+M+S G P + +Y
Sbjct: 374 ------MLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNA 427
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G CK G A + M GV P + + LL+
Sbjct: 428 LMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLE 465
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + E L+D+ G+ + + VL+ CK G +L LK
Sbjct: 224 KEGRLDEGSLLFDEMCGKGLVPNGVTFTVLID-GQCKGGK-----------VDLALKN-- 269
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
FQ M+ V P+ T+ ++ D + A LV +M + G+ P ++ + G
Sbjct: 270 --FQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGC 327
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ + A E+ M E G+ ++ + L+ +V +L + + + +
Sbjct: 328 CKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDD 387
Query: 296 STFKIIEDWF 305
T+ ++ D F
Sbjct: 388 PTYTMVVDCF 397
>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
Length = 541
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 111 LDMCSKRGDVFEAL-RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
+D + GDV A +L D RS G+ Y L C S+ +
Sbjct: 258 IDALCRGGDVALAQEQLKDMQRSRGLAPDAATYGPFL---RSACASKDA----------- 303
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+ + +M + PN T+ +V RL + + A++++ +M ++G P + SY
Sbjct: 304 --RAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEVDEAYNILNEMATYGEKPDVWSYN 361
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
L CKL +KA + + M E +P + +LK+ + +VD+ E+
Sbjct: 362 TLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNMILKMLIAIGRVDRAIEV 414
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 15/198 (7%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
+A +L+D+ G+ YN L+ C+ G + +E ++ RG
Sbjct: 234 KAQKLFDEMIERGVQPDVPAYNALIDAL-CRGGDVALA---QEQLKDMQRSRGLA----- 284
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
P+ AT+ R A A +D A ++ +M++ + P + +Y + C+LG
Sbjct: 285 ------PDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEV 338
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
D+AY + M G P+ + LL K+V+K ++ R+ + + ++ +I
Sbjct: 339 DEAYNILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNMI 398
Query: 302 EDWFDSVDAAEIGVLNWD 319
++ + + WD
Sbjct: 399 LKMLIAIGRVDRAIEVWD 416
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 99 RRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
R+ SP+ V + L + K G FEA LYD+ GI + YN ++
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI----------- 367
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+G + D L ++F M T P+ TFT++ + + +L+ +M
Sbjct: 368 --DGFCKQDR---LDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 422
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ +Y + GFC +G+ + A ++ M SGV P+ + LL D K+
Sbjct: 423 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 482
Query: 278 KVYEILHRLR 287
E+ ++
Sbjct: 483 DALEMFKAMQ 492
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ Q+M+ K+ P+ T+ ++ V + A +L +M GI P +Y + GF
Sbjct: 311 QLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 370
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK D A ++ M G P+ + L+ AK++D E+LH +
Sbjct: 371 CKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 421
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + F QM PN TFT++ + A L+ +M G+ P +YG
Sbjct: 165 VSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGT 224
Query: 231 ALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALL 267
+ G CK G+T A + M E S ++P SA++
Sbjct: 225 IVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAII 262
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I MI V PN + S+ + D E AF LV++MK+ G+ + +Y L G C
Sbjct: 318 ILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLC 377
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ D+A E+ + G+ P+ + ++ + DK E+L +
Sbjct: 378 RSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 427
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+G L D ++ G+ L L+ ++ G+ L + ++LL CK G
Sbjct: 119 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGL-CKDGK------ 171
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+ + ++ + ++ + P + ++ D AF + +QMKS I
Sbjct: 172 ---------VAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHI 222
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P +Y + G CKL KA ++ M +SGV P + L+ A +++K +
Sbjct: 223 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 282
Query: 282 ILHRLR 287
+L ++
Sbjct: 283 VLSDMQ 288
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 80/192 (41%), Gaps = 20/192 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKR 173
K G + EA+ + DD + + YN ++ Y+ E+GD E +
Sbjct: 308 KNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI----------ESGDTE--------Q 349
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + ++M V + T+ + + + A +L+ +++ G+ P + SY +
Sbjct: 350 AFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS 409
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C G+TDKA E+ M + G+ P L+ A +V + + ++ +
Sbjct: 410 ACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEP 469
Query: 294 SESTFKIIEDWF 305
S S + I+ D +
Sbjct: 470 SSSIYGIMVDAY 481
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 77/178 (43%), Gaps = 23/178 (12%)
Query: 52 ITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHK 110
++D++Q +D+ + G AF K + E+ A + A+ V
Sbjct: 284 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ------VYNSI 337
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GD +A L + +++G++ S YN+LL K SS+ + E
Sbjct: 338 IDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLL-----KGLCRSSQIDEAE------ 386
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
E+ + + P+ ++ ++ K D + A +L+++M +GI P LR+Y
Sbjct: 387 -----ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTY 439
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ F IF+QM + + P+ T+ ++ E A DLV +M+ G+ P + ++
Sbjct: 207 LRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNT 266
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ + G +K + V + M + G+ + +++K K+ + IL
Sbjct: 267 LIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAIL 319
Score = 38.5 bits (88), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/126 (18%), Positives = 55/126 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ +M VDP+ TF ++ E F ++ M+ GI + S+G + F
Sbjct: 247 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 306
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G +A + M V P ++++ +++ ++ + ++ +++ S
Sbjct: 307 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 366
Query: 296 STFKII 301
T+ ++
Sbjct: 367 VTYNLL 372
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ + + Q+M + +PN T+ ++ + A PE A +LV M+ G+PP + +Y
Sbjct: 374 IEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTI 433
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G CKL D+A E+ G+ P + LL ++ + +IL +
Sbjct: 434 LTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEAMDILKEM 489
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N L +F QMI + V N T+TS+ + KE E A L+ M P + +
Sbjct: 301 NKKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVT 360
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
Y + CK ++AY V M E+G P +AL++ ++ ++ E++
Sbjct: 361 YTIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELV---- 416
Query: 288 TLVRQ 292
TL+ Q
Sbjct: 417 TLMEQ 421
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 61/132 (46%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F ++QQM + PN T+TS ++A ++ ++ G+ P + +Y +F
Sbjct: 545 AFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIF 604
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
GFC+ GN A +V M + G++P ++ + + K +++ + ++ +
Sbjct: 605 GFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDL 664
Query: 294 SESTFKIIEDWF 305
+T+ + D F
Sbjct: 665 DTATYTTLIDGF 676
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 83/193 (43%), Gaps = 21/193 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE--------- 164
C +R +V +AL ++++ +G+ + Y VL+ C+ + E + R+
Sbjct: 293 CLQR-EVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPS 351
Query: 165 -NDSNL---GL------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
N+ N+ GL K +F++M D P+ T+ + + A +L +
Sbjct: 352 TNEFNMVIKGLLNDKLWKDAVSLFKEM-ADSGIPDAFTYNILIHWLCQRRKIREALNLWE 410
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+M G+ P + +Y L +C G D+A ++ M G P + L+K ++
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKA 470
Query: 275 KVDKVYEILHRLR 287
DK Y +L ++
Sbjct: 471 AFDKAYALLAEMK 483
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 16/148 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EALRLY+ GI L Y L+ + ++ + LK ++ +M
Sbjct: 649 EALRLYEKMIKEGIDLDTATYTTLI------------DGFSKDGNVTFALK----LYSEM 692
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ P+ TFT++ D + A L+ +M I P + Y + G+ + G
Sbjct: 693 VAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKL 752
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKL 269
+A+ + M E ++P++ L+ +
Sbjct: 753 QEAFRLHDEMLERKIMPDDTTYDILVGM 780
Score = 42.4 bits (98), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+ K G + EAL + D+ + G +S L++ + RE
Sbjct: 254 VDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQ----------RE------ 297
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ +IF++ + D + P + T+T + R + PE A++L +QM+ G+ P +
Sbjct: 298 VRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNM 357
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGV 256
+ G A + M +SG+
Sbjct: 358 VIKGLLNDKLWKDAVSLFKEMADSGI 383
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 20/185 (10%)
Query: 103 PEGVLRHKLDMC-SKRGDVFEALRLYDDARSNGIT--------LSQHHYNVLLYVCSCKC 153
P V H L +C G + EA++LY + G T L + H N + +
Sbjct: 419 PYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYAL 478
Query: 154 GSESSENGDRENDSNLG-LKRGF----------EIFQQMITDKVDPNEATFTSVARLAVA 202
+E +NG ND L G E+ ++ T+ P T+ S+ +
Sbjct: 479 LAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIK 538
Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
AF + +QM + GIPP + +Y + G+CK D A ++ + G+ P+
Sbjct: 539 AGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAA 598
Query: 263 LSALL 267
++L+
Sbjct: 599 YNSLI 603
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C +R + EAL L++ G+ Y+ LL +C C G +
Sbjct: 396 LCQRR-KIREALNLWEKMNETGVKPYIVTYHSLL-LCYCVNGC---------------MD 438
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+++ +M PN T+T++ + + K + A+ L+ +MK G+ +Y +
Sbjct: 439 EAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLI 498
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G C +G + E+ G VP ++++ + A + + + ++
Sbjct: 499 NGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M PNE T+ + A+ L+K+MK G+ P + +Y + GFC+
Sbjct: 149 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 208
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
D AY++ M E+G +P + LL +D+ YE+L +R
Sbjct: 209 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 258
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + + ++M + PN T+++V + + A+ L +QM G P L +Y L
Sbjct: 179 RAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLL 238
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD---KVYE 281
G C+ G D+AYE+ M E G+ P++ L+ K+D KV+E
Sbjct: 239 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFE 290
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F++MI ++PN T+ S+ + A L+++M + G P + +Y + G
Sbjct: 392 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 451
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
CK G +A + M P+ S L+ +++D
Sbjct: 452 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERID 493
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP----ELSALLKLSVDAKK 275
GI P + +Y + G CK G+ DKA E+ M ESG VP+ + AL K AK
Sbjct: 54 GITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKA 113
Query: 276 VD 277
+D
Sbjct: 114 LD 115
>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
Length = 374
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ EA RL+ + G T S YNV+++ + K +E +E + K+GF
Sbjct: 225 KDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEME-----KKGF 279
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
P+ T+ S+ ++A L ++MK G P + +Y + G
Sbjct: 280 V-----------PDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 328
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL-KLSVDAKKVDKV 279
K G ++ A+++ M ++G++P++ SAL+ L D +K KV
Sbjct: 329 AKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKDVKV 373
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 40/236 (16%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++G V +AL++ G+ L + YN L CG D
Sbjct: 150 IDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTL------ACGLCRVNRLDEAK----- 198
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ MI V PN T+T++ + D A L ++M G P + +Y
Sbjct: 199 -----TLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNV 253
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR--- 287
+ G+ K G+ +A M + G VP+ ++L+ KVD ++ ++
Sbjct: 254 MIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRG 313
Query: 288 ---------TLVRQV-----SESTFKIIEDWF-------DSVDAAEIGVLNWDVSK 322
L+ + SE+ F++ +D DS+ +A +G L+ D K
Sbjct: 314 TEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRK 369
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V +A RL DD +G++L+ YN LL C ++G + +
Sbjct: 21 VDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLL-----DCYVRQKDDGRVQEILEIM 75
Query: 171 LKRGFE-------------IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
G E + + + + V+PNE T+ + E A L+ M+
Sbjct: 76 ENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQ 135
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
G+ + + G+C+ G D A ++ A M + GV
Sbjct: 136 GQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGV 174
>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810
gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana]
gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 84/223 (37%), Gaps = 19/223 (8%)
Query: 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL 126
G C A S + + SS G + + R E V ++ K D A L
Sbjct: 211 GCCPDAVSYTTVI--SSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFEL 268
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
+ GI+ + Y+ L+ V C G ++ F QM+
Sbjct: 269 MREMVEKGISPNVISYSTLINVL-CNSGQ---------------IELAFSFLTQMLKRGC 312
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
PN T +S+ + + A DL QM + FG+ P + +Y + GFC GN KA
Sbjct: 313 HPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAV 372
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
V +HM E G P +L+ +D I +++ T
Sbjct: 373 SVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLT 415
>gi|356565780|ref|XP_003551115.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 622
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ EI+ M+ V P+ ++ +A+ V ++ E A +L+ M G+ P + +
Sbjct: 427 LEKCKEIYNNMLKSGVKPDGHAYSILAKGYVRAQEMEKAEELLTVMTKSGVQPNVVIFTT 486
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C +G D A V MGE GV P L+ +AK+ K +L +
Sbjct: 487 VMSGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFH 546
Query: 291 RQVSESTFKII-EDW 304
Q +ST ++ E W
Sbjct: 547 VQPKKSTILLVAEAW 561
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
IFQ +I P+ AT+T++ ++ + +V ++ + P R + + F
Sbjct: 152 IFQNLIEGGHQPSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSRFFNALVNAFA 211
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ GN + A +V M ESG+ P + L+K A K D+ ++L
Sbjct: 212 EFGNIEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESIKLL 258
>gi|299473702|emb|CBN78095.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 537
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 16/188 (8%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C ++G +AL L + RS G+ Q+ Y + CS G R +R
Sbjct: 246 CGEKGQWEKALNLLGEMRSKGLRPDQNSYRFAMQACS---------TGGR-------WER 289
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
++ +M D P+ A F + E A DL+ +M G+PP + A+
Sbjct: 290 ALQLLHEMEEDGSTPDVAAFQTALDALKDAAQWEKAMDLISEMDELGVPPSEGCFAAAIA 349
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
++G A MG G+ PE +++K + K+ + L L+ R+
Sbjct: 350 ACAEVGEWLPASTARKLMGYYGLQPELETYKSIIKACLVGKEFNMALTTLFDLQKSGRRA 409
Query: 294 SESTFKII 301
+ T+ ++
Sbjct: 410 DQETWDML 417
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 73/186 (39%), Gaps = 17/186 (9%)
Query: 114 CSKRGDVFEALRLYDD-ARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
C + G +AL L D+ + +GI Y + C D+ L +
Sbjct: 175 CGRGGQPRKALELLDEMVQVHGIAPDMICYGAAIQAC---------------GDAGL-TE 218
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ ++M + + P++ + S K E A +L+ +M+S G+ P SY A+
Sbjct: 219 EALSLMEKMSREGLLPDKTAYNSAIIACGEKGQWEKALNLLGEMRSKGLRPDQNSYRFAM 278
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G ++A ++ M E G P+ L DA + +K +++ + L
Sbjct: 279 QACSTGGRWERALQLLHEMEEDGSTPDVAAFQTALDALKDAAQWEKAMDLISEMDELGVP 338
Query: 293 VSESTF 298
SE F
Sbjct: 339 PSEGCF 344
>gi|218191264|gb|EEC73691.1| hypothetical protein OsI_08267 [Oryza sativa Indica Group]
Length = 751
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 77/159 (48%), Gaps = 8/159 (5%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG--SESSENGDRENDSNLGLKR 173
K G++ +A+ Y+ S+GI + H + LL C K G SE + DS L L +
Sbjct: 320 KMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQ-CFRKLGMTSEVIAYFLKFKDSGLHLDK 378
Query: 174 G-----FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
G ++F++M+ ++P+ T+ +A FDL+ +M G+ P +Y
Sbjct: 379 GEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTY 438
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G A+ GFC+ GN +A + + E G+ E S+++
Sbjct: 439 GIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMV 477
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
V P+ T+ + + + EM +MK F + P + ++ + D+A
Sbjct: 164 VVPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEAL 223
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
+V A M E GV P+ S+ L D +K D Y IL + V + ++ D
Sbjct: 224 QVWAEMTEMGVKPDARGYSSFLIGLCDCRKYDLAYVILQEINREKVPVEAMAYNMVMD 281
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 69/161 (42%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA +L+ + GI Y VLL + + E +E S L
Sbjct: 587 KAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHN 646
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ M +++P+ +T + E A +L +M G+ P +Y + G+
Sbjct: 647 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 706
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
C G KA ++ M + G+ P+E S L + S+ ++K+
Sbjct: 707 CSQGEISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 747
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G+ EA L ++ S+G+ Y ++ NG +N L++
Sbjct: 507 QQGNFEEACDLLENMVSDGLIPDHVTYTSII-------------NGFVKNGH---LRKAR 550
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M++ V P+ T+T + AK+ ++AF +M +P + +Y + G
Sbjct: 551 EVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGL 610
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
C D+AY+ M E G++P + + L+ S +
Sbjct: 611 CMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
ALRL + G+ Y +L+ C K G S + RGF F +M+
Sbjct: 409 ALRLKKEMTDQGLFPDIFTYTILVNGCF-KLGYVS-------------MARGF--FNEML 452
Query: 183 TDKVDPNEATFTS--VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
+ + P+ + + V + +A D +AF + ++M + G PP + +Y + C+ GN
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIA--DTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGN 510
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++A ++ +M G++P+ ++++ V + K E+ + +
Sbjct: 511 FEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEM 556
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +MI + + P+ + R+ + A ++ M+ FGI P + +Y L +C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K G D+A E+ + M E G P + + L+
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLV 257
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + ++M+ P+ T+ + + E A DL++ M S G+ P +Y +
Sbjct: 479 AFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIIN 538
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
GF K G+ KA EV M GV P + L+ + +D + ++
Sbjct: 539 GFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKM 591
>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
Length = 1014
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 19/186 (10%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
E +L H L KRG + +AL L+D R GI ++ + YN L+ CK GS
Sbjct: 373 EVTYAILIHAL---CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLIN-GYCKQGS----- 423
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
L R + M+ + + P A+++ + D A +L ++M G
Sbjct: 424 ----------LDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERG 473
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I ++ + GFCK D+A + M +S V+P E + +++ + K +
Sbjct: 474 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 533
Query: 281 EILHRL 286
++ ++
Sbjct: 534 QLYDQM 539
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+ V EA L G+ + YN L+ C +E ++ DR
Sbjct: 310 IDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALI---DKLCKNERFDDADR------- 359
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+F++M ++PNE T+ + + E A L +M+ GI + Y
Sbjct: 360 ------LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNS 413
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G+ D+A + + M + G+ P S L+
Sbjct: 414 LINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLI 450
>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 18/180 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G V +A Y RS + + +N L+ C ++G
Sbjct: 119 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACG--------QSG--------A 162
Query: 171 LKRGFEIFQQMITDK--VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M + +DP+ T ++ + + A ++ + + I Y
Sbjct: 163 VDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVY 222
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
A+ ++G+ + A +V M GVVP+E LSAL+ ++ A K+D +EI+ +
Sbjct: 223 TIAINSCSQIGDWEFACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKA 282
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 24/170 (14%)
Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
FE L+L A++ G+ Y L+ C+ K G + FE+F +
Sbjct: 62 FEVLQL---AKAVGLKADCKLYTTLISTCA-KSGKVDAM---------------FEVFHE 102
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+ V+PN T+ ++ AF M+S + P + + + G
Sbjct: 103 MVNAGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGA 162
Query: 241 TDKAYEVDAHM-GESGVV-PEEPELSALLKLSVDAKKVDK---VYEILHR 285
D+A++V A M GE+ + P+ + AL+K +A +VD+ VY ++H+
Sbjct: 163 VDRAFDVLAEMTGEAQPIDPDHITVGALIKACTNAGQVDRAQEVYNMVHK 212
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 20/174 (11%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C + V EA R ++ TLS +N+L+ VC+ +S+N
Sbjct: 20 LCRSQKAVKEAFRFCKLVQNP--TLST--FNMLMSVCA------TSQNS----------A 59
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
FE+ Q + + +T++ + F++ +M + G+ P + +YG +
Sbjct: 60 GAFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALI 119
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G + G KA+ M V P+ +AL+ + VD+ +++L +
Sbjct: 120 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEM 173
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/206 (18%), Positives = 81/206 (39%), Gaps = 16/206 (7%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C+ G V A +Y+ I + Y + + CS + GD E
Sbjct: 191 IKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCS--------QIGDWE------ 236
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++F M V P+E +++ +A + AF+++++ K+ G + Y
Sbjct: 237 --FACKVFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSS 294
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ C N K E+ + + P ++AL+ D ++ K E+L ++
Sbjct: 295 LMGACCNAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWG 354
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVL 316
+ + T+ I+ + D E G++
Sbjct: 355 LRPNTITYSILSVASERKDDLEAGLM 380
>gi|297834714|ref|XP_002885239.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
gi|297331079|gb|EFH61498.1| EMB1270 [Arabidopsis lyrata subsp. lyrata]
Length = 1429
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/196 (17%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNL 169
LD ++ G++FE ++Y ++ G + Y +++ +C K ++ ++N
Sbjct: 864 LDAFARAGNIFEVNKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANF 923
Query: 170 GL------------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ K+ +++Q++ ++P+E T+ ++ + PE +
Sbjct: 924 KVELAIWNSMLKMYTVIEDYKKTVQVYQRIKESGLEPDETTYNTLIIMYCRDRRPEEGYS 983
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L++QM++ G+ PKL +Y + F K ++A ++ + G+ + ++K+S
Sbjct: 984 LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043
Query: 272 DAKKVDKVYEILHRLR 287
D+ K ++L ++
Sbjct: 1044 DSGSDSKAEKLLQMMK 1059
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 86/206 (41%), Gaps = 29/206 (14%)
Query: 124 LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183
+ L D R++G+ YN LL CS DSN L+ ++F+ M
Sbjct: 282 VELLDMVRNSGLRPDAITYNTLLSACS--------------RDSN--LEGAVKVFEDMEA 325
Query: 184 DKVDPNEATFTSV----ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+ P+ T+ ++ R +A E + +L ++K F P +Y L+ F +
Sbjct: 326 HRCQPDLWTYNAMISVYGRCGLAAEAERLFIEL--ELKGFS--PDAVTYNSLLYAFARER 381
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV-RQVSESTF 298
NT+K EV M + G +E + ++ + ++D ++ ++ L R T+
Sbjct: 382 NTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITY 441
Query: 299 KIIEDWFD----SVDAAEIGVLNWDV 320
++ D SV+AA + DV
Sbjct: 442 TVLIDSLGKANRSVEAAALMSEMLDV 467
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 117/268 (43%), Gaps = 43/268 (16%)
Query: 55 IKQNRFSAD-LTTGLCTL------AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVL 107
++ N+ + D L GLC + + K V +S P+T T + EG
Sbjct: 253 VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN---------LIIEGHF 303
Query: 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDREND 166
RH +K+ +A RL + + GI+ + + Y+++++ +C ++G+ E
Sbjct: 304 RHH----NKK----DAFRLLSEMENAGISPNVYTYSIMIHGLC---------QSGEPEKA 346
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
S+L ++M T + PN + + + + +A ++ +M + P L
Sbjct: 347 SDL--------LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLY 398
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR- 285
Y +FG K+G +++ + A M E G++P E S L+ + ++ +++ R
Sbjct: 399 CYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRM 458
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAEI 313
L T ++ ++E +F S D ++
Sbjct: 459 LDTGLKPNDVIYIDLLESYFKSDDIEKV 486
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 20/201 (9%)
Query: 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE 164
G+L H L S G++ A R+ + NG H Y+ L+ S + DRE
Sbjct: 506 GILIHNL---SSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLI--------SGLCKTADRE 554
Query: 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
+ F I +M VDPN + ++ D A ++ + + G+ P
Sbjct: 555 --------KAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 606
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+Y + G CK+G+ A+ + M +G+ P+ S L A +++ ++
Sbjct: 607 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIE 666
Query: 285 RLRTLVRQVSESTFKIIEDWF 305
+ L S S+F + D F
Sbjct: 667 EM-FLRGHASISSFNNLVDGF 686
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
V + +D + G+ EA ++ + + G+ ++ Y+ L+ CK G
Sbjct: 224 VYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGL-CKMGQ---------- 272
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+ R + +QM+ D P+ T+ + + + AF L+ +M++ GI P +
Sbjct: 273 -----MDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNV 327
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+Y + G C+ G +KA ++ M G+ P
Sbjct: 328 YTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKP 360
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 116/278 (41%), Gaps = 40/278 (14%)
Query: 44 HMHSFTKPITDIKQNRFSAD------LTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKK 97
+M + + +++I++N D L +GLC A +K+ G + SKK
Sbjct: 517 NMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAF---------GILDEMSKKG 567
Query: 98 ARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156
P V + L D K GD+ A +++ + G+ + Y L+ SCK G
Sbjct: 568 V---DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLID-GSCKVGDI 623
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
S+ F ++ +M+ + P+ ++ + + D E A L+++M
Sbjct: 624 SN---------------AFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEM 668
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
G + S+ + GFCK G + ++ + G+VP + ++ +A K+
Sbjct: 669 FLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKL 727
Query: 277 DKVYEILHRLRTLVRQVSESTFKIIEDWF-DSVDAAEI 313
+V+ I L+ ++ SES + F D ++ +I
Sbjct: 728 SEVHTIFVELQ---QKTSESAARHFSSLFMDMINQGKI 762
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL-KRGF------ 175
A ++ + R G L+ YNVL+ C+ G+ G +++ + GL GF
Sbjct: 136 AKKVLVEMRERGCGLNTVTYNVLI-AGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALI 194
Query: 176 -------------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ +M ++ PN + ++ + + + + AF ++K+M + G+
Sbjct: 195 NGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQ 254
Query: 223 PKLRSYGPALFGFCKLGNTDKA 244
P +Y + G CK+G D+A
Sbjct: 255 PNKITYDNLVRGLCKMGQMDRA 276
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G V E+ + + + G+ ++ Y+ L++ +NGD E+ L
Sbjct: 408 SKVGRVEESTKYFAQMQERGLLPNEFTYSGLIH--------GYLKNGDLESAEQL----- 454
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
Q+M+ + PN+ + + +D E K M G+ R YG +
Sbjct: 455 ---VQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHN 511
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
GN + A+ V + + ++G VP+ S+L+ +K + IL +
Sbjct: 512 LSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEM 563
>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Brachypodium distachyon]
Length = 476
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 74/191 (38%), Gaps = 19/191 (9%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR------------ENDSNLGLKR 173
L D R+ G + YNVLL C S E+ R N GL R
Sbjct: 148 LLADMRAGGFAPTTATYNVLLK-AHCSDASAPIEDAVRLFRNIPKPDACSYNTVIDGLCR 206
Query: 174 ------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
EIF +M+ + V P T+T+V + A + +M GI P + +
Sbjct: 207 RSRRADAQEIFSEMVANGVAPTVVTYTTVINWLARDGCLDDALKMFDEMGRIGIAPNVVT 266
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
Y + G CK G A E+ M + +P S+++ ++++ E+L R+R
Sbjct: 267 YSSLIDGLCKGGRAASALELLDRMAKEAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMR 326
Query: 288 TLVRQVSESTF 298
R+ F
Sbjct: 327 LQGRKPDAGLF 337
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 25/199 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG------DRE 164
+D ++GD+ +A L+DD + I + Y++L+ C+ G G +
Sbjct: 444 IDGMCRKGDLAKANELWDDMHAREILPNHITYSILID-SHCEKGQVEDAFGFLDEMVKKG 502
Query: 165 NDSNL--------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
N N+ +K+G + Q+M D V P+ TF ++ + +E+ AF
Sbjct: 503 NLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAF 562
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
++ M+ + P +Y + GF + GN A V MG+SG+ P+ +L+
Sbjct: 563 NVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGH 622
Query: 271 VDAKKVDKVY----EILHR 285
V A + + E++HR
Sbjct: 623 VTAGNSKQAFQLHDEMIHR 641
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 59/135 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + E++ M ++ PN T++ + K E AF + +M G P +R+Y
Sbjct: 453 LAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS 512
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C+ GN K + M + V P+ + L+ + + + + + + + +
Sbjct: 513 IIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM 572
Query: 291 RQVSESTFKIIEDWF 305
+ T+ +I + F
Sbjct: 573 VRPDAVTYNMIINGF 587
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 28/244 (11%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKC-------------GSESSENGDRENDSNL 169
A R +D S+G+ + + YN+L+ + G+ N N
Sbjct: 134 ARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVA 193
Query: 170 GLKRGFEI------FQQMITDKVDPNEATFTSVAR---LAVAKEDPEMAFDLVKQMKSFG 220
R E+ M+ + PN TF S+ A ED FD +M G
Sbjct: 194 AFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFD---EMMREG 250
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ P SY + G+CK G + +A V A M + G++P+ ++L+ + A ++
Sbjct: 251 LAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAV 310
Query: 281 EILHRLRTLVRQVSESTFKIIEDWF---DSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQ 337
++ ++R Q++E TF + D F +D A + V +++ +V +G
Sbjct: 311 TLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGY 370
Query: 338 GWLG 341
+G
Sbjct: 371 CMVG 374
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
FE+ QQM+ V P+ T++S+ R+ ++ A L K M G+ P +Y +
Sbjct: 414 AFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 473
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G CK GN ++A + M ++GV+P+ S L+ + + + ++L +L
Sbjct: 474 GHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKL 526
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 24/224 (10%)
Query: 102 SPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---- 155
+P+GV + L C K G EAL ++ + GI + L++V CK G+
Sbjct: 252 APDGVSYNTLVGGYC-KAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHV-MCKAGNLEWA 309
Query: 156 -----ESSENGDRENDSNLG------LKRGFE-----IFQQMITDKVDPNEATFTSVARL 199
+ E G + N+ K+GF + M ++ P+ + ++
Sbjct: 310 VTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALING 369
Query: 200 AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ A +L+ +M++ G+ P + +Y + +CK +T A+E++ M E GV+P+
Sbjct: 370 YCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPD 429
Query: 260 EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
S+L+++ + K++ + + + L Q E T+ + D
Sbjct: 430 AITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLID 473
>gi|357145938|ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
chloroplastic-like [Brachypodium distachyon]
Length = 1084
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 24/185 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G V +A Y S + + +N L+ C E+G
Sbjct: 534 IDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG--------ESG--------A 577
Query: 171 LKRGFEIFQQMITDKVD--------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ R F++ +M + + P+ T ++ + + + A ++ K ++ + I
Sbjct: 578 VARAFDVLSEMTAEPSESKGWKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIK 637
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
Y AL G+ A ++ M + GV+P+E LSAL+ ++ A++ D +EI
Sbjct: 638 GTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVIPDEMFLSALVDVAGHARRADAAFEI 697
Query: 283 LHRLR 287
+ +R
Sbjct: 698 IKDVR 702
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 17/217 (7%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C + G A +Y + I + Y + L CS GD
Sbjct: 612 MKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSL--------TGD-------- 655
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +I++ M V P+E +++ +A + AF+++K +++ G + +Y
Sbjct: 656 LGFALKIYEDMNKIGVIPDEMFLSALVDVAGHARRADAAFEIIKDVRAKGFHVGIMAYSS 715
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ C + KA ++ + S + P P ++AL+ D +V K E+L+ L+
Sbjct: 716 FMGACCNAKDWKKALQLFEEIKISRLTPTVPMMNALITSLCDGDQVQKSIEVLNELKEFG 775
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
+ +E T+ ++ + AE+G+ ++ KV +GI
Sbjct: 776 VRPNEITYSVLCVACERNGEAELGIDLFEQLKV-DGI 811
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 26/186 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L +C+ D AL++ + G+ Y L+ C+ KCG
Sbjct: 464 LSVCAHSQDFDGALQVMMLLKEAGLKPDCKLYTTLISTCA-KCGK--------------- 507
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F +M++ ++PN T+ ++ AF M S + P R
Sbjct: 508 VDAMFEVFHEMVSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSSKKVKPD-RVVFN 566
Query: 231 ALFGFC-KLGNTDKAYEVDAHM--------GESGVVPEEPELSALLKLSVDAKKVDKVYE 281
AL C + G +A++V + M G ++P+ + AL+K + A + D+ E
Sbjct: 567 ALISACGESGAVARAFDVLSEMTAEPSESKGWKPILPDHVTVGALMKTCIQAGQADRARE 626
Query: 282 ILHRLR 287
+ L+
Sbjct: 627 VYKMLQ 632
>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g22960, mitochondrial; Flags: Precursor
gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 718
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N K ++ +M+ ++ P+ T+ + E AF +MK G+ P + +
Sbjct: 563 NGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 622
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
+ L+G CK GN D+AY M E G+ P + + L+ + D +K ++V ++
Sbjct: 623 HNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKL 677
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G EA L+DD R+ I S YN L+ C S + E R
Sbjct: 386 KMGKFVEASLLFDDLRAGDIHPSIVTYNTLI---DGLCESGNLEGAQR------------ 430
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M T + P+ T+T++ + V + MA ++ +M GI P +Y G
Sbjct: 431 -LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGE 489
Query: 236 CKLGNTDKAYEVDAHM 251
+LG++DKA+ + M
Sbjct: 490 LRLGDSDKAFRLHEEM 505
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + E +++ + P+ T+T+V R + +MA +L +M + P + +Y
Sbjct: 531 LVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFV 590
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G K G ++A++ M + GV P +ALL A +D+ Y L ++
Sbjct: 591 LIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKM 646
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
+ SENGD E ++++MI K++ N +F V A D+++
Sbjct: 132 KESENGDME-----------FVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIED 180
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE---SGVVPEEPELSALL 267
MK +G+ P + +Y + G+CK+G K Y+ DA + E G+ P E + L+
Sbjct: 181 MKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILI 235
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 18/158 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL 169
+D K +V A+R++ + + G+ + YN+L+ +CS D + D +
Sbjct: 235 IDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCS-----------DGKVDEAV 283
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L+ QM++ ++PN T + + A +L M+ G+ P +Y
Sbjct: 284 ALR------DQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYT 337
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ +CK G + A+ + M + G+ PE + L+
Sbjct: 338 TLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLI 375
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 17/132 (12%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+CS G V EA+ L D S+ + + +NVL+ NG +N + +
Sbjct: 273 LCSD-GKVDEAVALRDQMVSSDLEPNVVTHNVLI-------------NGFCKNKT---VN 315
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+F M VDPN T+T++ E AF L M GI P++ +Y +
Sbjct: 316 EAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLI 375
Query: 233 FGFCKLGNTDKA 244
G C+ G+ A
Sbjct: 376 AGLCRKGDVKAA 387
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K V EA+ L++D G+ + Y L+ CK G ++ F
Sbjct: 310 KNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDA-YCKDGR---------------MEDAF 353
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ MI + P +T+ + K D + A L+ +M S + + +Y +
Sbjct: 354 ALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSL 413
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G + KA ++ M E G+ P + L+
Sbjct: 414 CKKGESRKAVKLLDEMFEKGLNPSHVTYNTLM 445
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 20/181 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL 169
+D KRG++ EA++ ++ S + YN ++Y +C NG+ + +
Sbjct: 328 IDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCL---------NGNVDEAKRM 378
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVAR-LAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+M + + N AT TS+ + L V + + A L K+M G+ ++Y
Sbjct: 379 --------MTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHL-KEMVGLGMEADAKAY 429
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
G + +CK+G D A + M G+ P +A+ ++ V++ K DK IL +++
Sbjct: 430 GVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQ 489
Query: 289 L 289
L
Sbjct: 490 L 490
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 25/128 (19%)
Query: 110 KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
KLD ++ L + DA++ G+ ++++ CK G + +D+
Sbjct: 406 KLDDAARHLKEMVGLGMEADAKAYGVVVNEY----------CKIG--------KADDA-- 445
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+ ++M + ++P+ ++F +V R+ V + A +++QMK G P SY
Sbjct: 446 -----ISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYS 500
Query: 230 PALFGFCK 237
+ G CK
Sbjct: 501 TVIDGLCK 508
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK + A +++D RS G + YN+++ GS S L+
Sbjct: 142 SKANQIDSANQVFDRMRSRGFSPDVVTYNIMI-------GSLCSRGK---------LELA 185
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FE+ +++ D P+ T+T + + + A +L ++ S G+ P L +Y + G
Sbjct: 186 FEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRG 245
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK G D+A + H+ G P+ + LL+
Sbjct: 246 ICKEGMEDRALDFVRHLSARGCNPDVVSYNILLR 279
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 18/198 (9%)
Query: 106 VLRHKLDMCS--KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR 163
V+ H + + S + G V EA+ + + + G+T + Y+ L+ CK G
Sbjct: 306 VVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISA-FCKEGR-------- 356
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
L E ++M++D P+ + ++ ++A D+ +++ G PP
Sbjct: 357 -------LDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPP 409
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+R+Y GN KA E+ + M G+ P+E ++L+ VD+ +L
Sbjct: 410 TVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLL 469
Query: 284 HRLRTLVRQVSESTFKII 301
+ Q + +F I+
Sbjct: 470 VDMEATRFQPTVISFNIV 487
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ E+ +MI +DP+E T+ S+ + A L+ M++ P + S+ L
Sbjct: 429 KALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVL 488
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G CK + E+ M E G +P E L++
Sbjct: 489 LGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLIE 524
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 67/169 (39%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + EAL L+D+ S G+ + YN ++ CK G E R +
Sbjct: 215 GRINEALELFDELVSRGLRPDLYTYNAIIRGI-CKEGMED---------------RALDF 258
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+ + +P+ ++ + R + K E L+K M G P + ++ + FC+
Sbjct: 259 VRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCR 318
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G +A V M E G+ P+ L+ ++D E L ++
Sbjct: 319 EGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM 367
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V +AL + D G + YN L+ CK G ++ EI
Sbjct: 277 GNVNDALDIVDFMIEKGFDPDVYTYNSLIS-GMCKLGE---------------FEKAIEI 320
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
QQMI + PN T+ ++ + + E A DL + + S G+ P + ++ + G C
Sbjct: 321 LQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCL 380
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALL 267
N D A E+ M G P+E S L+
Sbjct: 381 SKNQDIAMEMFEEMKNKGCKPDEFTYSILI 410
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 19/146 (13%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGL 171
+C R + +A ++D G++ S YN L+ +C K E+S+
Sbjct: 448 LCKSR-RIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQ------------ 494
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ QMI + + P++ T+ S+ D E A D+V+ M S G P + +YG
Sbjct: 495 -----LMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTL 549
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVV 257
+ G C+ G D A ++ + G+V
Sbjct: 550 IGGLCRAGRVDVASKLLRSVQMKGIV 575
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EAL L + S+G + YN L+ C S E+ + EIF QM
Sbjct: 421 EALMLLKEMESSGCARNAVVYNTLI---DGLCKSRRIEDAE-------------EIFDQM 464
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
V + T+ ++ + E A L+ QM G+ P +Y L FC++G+
Sbjct: 465 ELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDI 524
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+KA ++ M +G P+ L+ A +VD ++L ++
Sbjct: 525 EKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQ 570
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
L+ + GI L +NVL+ CK L+ + ++M
Sbjct: 145 LHSKMVNEGIVLDVSTFNVLIKAL-CKAHQ---------------LRPAILMLEEMANHG 188
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
+ P+E TFT++ + + + D A + KQM +G S + GFCK G ++A
Sbjct: 189 LKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEAL 248
Query: 246 EVDAHMGESGVVPEEPELSALL 267
+ E G P++ ++L+
Sbjct: 249 RFVLEVSEEGFSPDQVTFNSLV 270
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 76/188 (40%), Gaps = 16/188 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V EALR + G + Q +N L+ C+ G+ ND+
Sbjct: 240 KEGRVEEALRFVLEVSEEGFSPDQVTFNSLVN-GFCRIGNV--------NDA-------L 283
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+I MI DP+ T+ S+ + E A ++++QM P +Y +
Sbjct: 284 DIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISAL 343
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK + A ++ + G++P+ + L++ +K D E+ ++ + E
Sbjct: 344 CKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDE 403
Query: 296 STFKIIED 303
T+ I+ D
Sbjct: 404 FTYSILID 411
>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 724
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ +D PN T+TS+ ++ A L +MK G+ P + +Y
Sbjct: 362 EKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTT 421
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK GN D+AYE+ M + G P +A++ + + YE+L++ +
Sbjct: 422 LINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCG 481
Query: 291 RQVSESTFKII 301
+ T+ I+
Sbjct: 482 LEADGVTYTIL 492
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K +FQ +++ + P + T+TS+ + D ++A MK G P +YG
Sbjct: 537 MKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGS 596
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
+ G CK D+A ++ M + G+ P E
Sbjct: 597 LISGLCKKSMVDEACKLYEAMIDRGLSPPE 626
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R F++MI PN FTS+ K + AF+++++M G P + ++
Sbjct: 291 VNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 350
Query: 231 ALFGFCKLGNTDKAYEV 247
+ G CK G T+KA+ +
Sbjct: 351 LIDGLCKRGWTEKAFRL 367
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 3/112 (2%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + + ++M + PN T+++V + + A+ L +QM G P L +Y L
Sbjct: 60 RAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLL 119
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD---KVYE 281
G C+ G D+AYE+ M E G+ P++ L+ K+D KV+E
Sbjct: 120 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFE 171
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M PNE T+ + A+ L+K+MK G+ P + +Y + GFC+
Sbjct: 30 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 89
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
D AY++ M E+G +P + LL +D+ YE+L +R
Sbjct: 90 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMR 139
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F++MI ++PN T+ S+ + A L+++M + G P + +Y + G
Sbjct: 273 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 332
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
CK G +A + M P+ S L+ +++D
Sbjct: 333 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERID 374
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F M+ V P+ TF+++ + A L+++M + P + +Y + GFC
Sbjct: 379 LFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFC 438
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K+G +A V M + G P +AL+ A K Y++L +
Sbjct: 439 KVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + QM++ +DP+ T+ S+ + A L+ M S P + SY L
Sbjct: 343 RALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVL 402
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G CK D A EV A M E+G P E + L++ + + E+ + L ++
Sbjct: 403 LGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAMELANSLY-IMNA 461
Query: 293 VSESTFKIIEDWFDSVDA 310
+SE +FK + F +D
Sbjct: 462 ISEDSFKRLNKTFPLLDV 479
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 174 GFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
++F++++ D P T+T + + + + A L+ +M S G+ P +Y
Sbjct: 98 ALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVIT 157
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
G CK G D+A+E + G P+ + LL+ ++ K D+
Sbjct: 158 RGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDE 203
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR ++F +M+ + + P+ AT+ ++ ++ K+ E A + ++M G P L +Y
Sbjct: 303 IKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNV 362
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G GN DKA E M G P + ++ DA V+K + ++
Sbjct: 363 VIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKM 418
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ A +++++ GI S YN ++ V C +S EN +
Sbjct: 301 GEIKRARKVFNEMVGEGILPSTATYNAMIQVL---CKKDSVENA-------------VLM 344
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M+ PN T+ V R + + A + +++MK+ G P +++Y A+ FC
Sbjct: 345 FEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCD 404
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
G+ +K + MG+ G +P + L+ KK
Sbjct: 405 AGDVEKGLSMFEKMGQ-GSLPNLDTYNVLISAMFVRKK 441
Score = 42.4 bits (98), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 63/145 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK +E F QM +V+ + T+T++ + + A + +M GI P +Y
Sbjct: 268 LKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPSTATYNA 327
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK + + A + M + G VP + +++ A +DK E + R++T
Sbjct: 328 MIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIERMKTDG 387
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGV 315
+ + T+ + +F E G+
Sbjct: 388 CEPNVQTYNVAIRYFCDAGDVEKGL 412
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 94/217 (43%), Gaps = 21/217 (9%)
Query: 60 FSADLTTGLCTLAFSKKS-TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKL---DMCS 115
F+ L+ GL F+ + V E +T + ++ P V+ + + +C
Sbjct: 448 FNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALC- 506
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G+ EA L ++ S+G+ Y ++ NG +N L++
Sbjct: 507 QQGNFEEACDLLENMVSDGLIPDHVTYTSII-------------NGFVKNGH---LRKAR 550
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M++ V P+ T+T + AK+ ++AF +M +P + +Y + G
Sbjct: 551 EVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGL 610
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
C D+AY+ M E G++P + + L+ S +
Sbjct: 611 CMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
ALRL + G+ Y +L+ C K G S + RGF F +M+
Sbjct: 409 ALRLKKEMTDQGLFPDIFTYTILVNGCF-KLGYVS-------------MARGF--FNEML 452
Query: 183 TDKVDPNEATFTS--VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
+ + P+ + + V + +A D +AF + ++M + G PP + +Y + C+ GN
Sbjct: 453 SKGLKPDRFAYNTRIVGEMKIA--DTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGN 510
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++A ++ +M G++P+ ++++ V + K E+ + +
Sbjct: 511 FEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEM 556
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +MI + + P+ + R+ + A ++ M+ FGI P + +Y L +C
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K G D+A E+ + M E G P + + L+
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLV 257
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + ++M+ P+ T+ + + E A DL++ M S G+ P +Y +
Sbjct: 479 AFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIIN 538
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
GF K G+ KA EV M GV P + L+ + +D + ++
Sbjct: 539 GFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKM 591
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFE 176
G+ ALR+ D R G + Y L +C CK ++ F
Sbjct: 644 GNTTSALRILDLMRDGGCKPDEWSYTEL--ICGFCKISK---------------MESAFG 686
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ D + PNE T+T++ E + A L++ MK G P +++Y + G
Sbjct: 687 LFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLT 746
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K N A E+ M E G+ P +A++
Sbjct: 747 KQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 777
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++F QM + +PN T++++ AFDL+++M GI P +
Sbjct: 436 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 495
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ C +G + A+ + M G P +AL+ + + + HR+
Sbjct: 496 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 551
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK +F +M D V PN T+ ++ + V + AF ++ M G+ + +Y
Sbjct: 541 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNE 600
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G+C LG+ KA V +M + G + ++K D+ IL +R
Sbjct: 601 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMR 657
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 52/111 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ + MI + + PN T+T++ +A ++ +M G P L +Y +
Sbjct: 756 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 815
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G ++A + A + G++P+E +++ + + KV+ + L R+
Sbjct: 816 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRM 866
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K+ + M+ N T+ ++ + + A ++ M+ G P SY
Sbjct: 612 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 671
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GFCK+ + A+ + M + G+ P E +AL+ +K+D +L ++
Sbjct: 672 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 727
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +++ ++ P+ T+TS+ K D + A + QM G P +Y + G C
Sbjct: 407 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 466
Query: 237 KLGNTDKAYEVDAHMGESGVVP 258
G ++A+++ M G++P
Sbjct: 467 DSGRVNEAFDLIREMILHGILP 488
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F++ ++MI + P T T E A+ L MK+ G P + +Y
Sbjct: 471 VNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTA 530
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C G A + M GV P +AL+ + V+ +++ + +L+ +
Sbjct: 531 LISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 586
>gi|297808179|ref|XP_002871973.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297317810|gb|EFH48232.1| kinase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 831
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR EI++ M+ +DP+ F+ +A+ +PE A ++ QM+ FG+ P + Y
Sbjct: 617 MKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQ 676
Query: 231 ALFGFCKLGNTDKAYEVDAHM-GESGVVP 258
+ G+C G KA +V M G G+ P
Sbjct: 677 IISGWCSAGEMKKAMQVYNKMRGSVGLSP 705
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +M V PN F S+ + + D + ++V M+ FG+ P + ++
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL- 289
+ + +G+ + E+ M E G+ P+ S L K A + +K +IL+++R
Sbjct: 607 LMNAWSSVGDMKRCEEIYRDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666
Query: 290 VRQVSESTFKIIEDW 304
VR +II W
Sbjct: 667 VRPNVVIYTQIISGW 681
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +M+ +KV PN T ++ + E A +MK G+ P L + + GF
Sbjct: 518 IIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFL 577
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKL--SV-DAKKVDKVY 280
+ + D EV M E GV P+ S L+ SV D K+ +++Y
Sbjct: 578 NINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 624
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYG 229
++ + I +M + V P+ TF ++AR A D++ +M + P +R+ G
Sbjct: 476 IEEAWNIVYKMQSFGVKPDAVTFNTLARAYSRIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C+ G ++A M E GV P ++L+K ++ +D V E++ +
Sbjct: 536 TIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEF 595
Query: 290 VRQVSESTFKIIEDWFDSV 308
+ TF + + + SV
Sbjct: 596 GVKPDVVTFSTLMNAWSSV 614
>gi|356498877|ref|XP_003518274.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 395
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 18/171 (10%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGF 175
G + EA+R + S I L Y ++L+ +CS G + D+
Sbjct: 79 EGRLDEAIRFLKNLPSYSIQLDVISYTIILHSLCS----------GGKWMDA-------M 121
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ M+ + PN TF ++ K A ++++ M G P RSY P + GF
Sbjct: 122 KLLASMLRNGFSPNVVTFNTLINFLCLKGLLGKALNVLEMMPKHGCTPNFRSYNPLIEGF 181
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
C + D+ E M G + + LL KVD EIL++L
Sbjct: 182 CNEKSADRTIEYSRIMVSRGCYLDTVTYNILLTALCKDGKVDDAIEILNQL 232
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 18/203 (8%)
Query: 86 NTGTMSNKSKKKARRESPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYN 143
NT + + +K R+ V+ + + D K G + +AL + + + GI + YN
Sbjct: 245 NTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYN 304
Query: 144 VLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK 203
L+ GS S R +D G ++ + MIT K+ PN TF+++ V +
Sbjct: 305 SLI-------GSFCSFG--RWDD-------GAQLLRDMITRKITPNVVTFSALIDSLVKE 348
Query: 204 EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL 263
A DL +M + GI P +Y ++G C D+A ++ M G P+
Sbjct: 349 GKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTY 408
Query: 264 SALLKLSVDAKKVDKVYEILHRL 286
+ L+ AK+VD + ++
Sbjct: 409 NILINGFCKAKQVDDGMRLFRKM 431
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ M+ + P+ T ++ K+ A DL+ +M + G P +YGP L
Sbjct: 181 ELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRM 240
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK GNT A ++ M + P
Sbjct: 241 CKSGNTASALDLLRKMEHRKIKP 263
>gi|388500892|gb|AFK38512.1| unknown [Medicago truncatula]
Length = 249
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 15/187 (8%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG--IPPKLRSY 228
L+ + + +M+ + P+ T+ ++AR + + A L+ +M+ + + P R+
Sbjct: 33 LEEAWNVMHKMVNSGMQPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTC 92
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
G + G+CK GN +A M E GV P ++L+K +D D V E L +
Sbjct: 93 GIIIRGYCKEGNMTEALRFLYKMKELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEE 152
Query: 289 LVRQVSESTFKII-------------EDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWH 335
+ T+ I E+ FD + AEI S + +G VR G
Sbjct: 153 FGIKPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDK 212
Query: 336 GQGWLGS 342
+ L S
Sbjct: 213 AEALLNS 219
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 6/129 (4%)
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++NG+ +N L LK Q +KV PNE T + R + + A + +MK
Sbjct: 63 AQNGETDNAERLILK------MQQYNNKVKPNERTCGIIIRGYCKEGNMTEALRFLYKMK 116
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ P + + G+ + +TD E M E G+ P+ S ++ + +D
Sbjct: 117 ELGVHPNPVVFNSLIKGYLDITDTDGVEEALTLMEEFGIKPDVVTYSTIMNAWSSSGLMD 176
Query: 278 KVYEILHRL 286
EI +
Sbjct: 177 NCEEIFDDM 185
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI PN TF ++ K E A +L+KQM G P L SY + G
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G T++A E+ M G+ P S++ +V+KV ++ ++
Sbjct: 507 GKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M+ PN TF ++ E +++ QM G P +R Y + G
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ + A E+ M G+ P + +LK A++ + E+L + + +
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356
Query: 296 STFKIIEDWF 305
TF I+ D+F
Sbjct: 357 VTFNILVDFF 366
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 51/112 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI PN TF ++ K E A +L+KQM G P L SY + G
Sbjct: 447 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 506
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G T++A E+ M G+ P S++ +V+KV ++ ++
Sbjct: 507 GKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIK 558
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 57/130 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M+ PN TF ++ E +++ QM G P +R Y + G
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ + A E+ M G+ P + +LK A++ + E+L + + +
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356
Query: 296 STFKIIEDWF 305
TF I+ D+F
Sbjct: 357 VTFNILVDFF 366
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
KRG V +A L ++ NG + + + L++ CK G +R F
Sbjct: 913 KRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGL-CKKG---------------WTERAF 956
Query: 176 EIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+F ++I +D PN T+T++ +E A L ++MK G+ P +Y + G
Sbjct: 957 RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 1016
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
CK GN KAYE+ M G P ++++ + ++ +++L+
Sbjct: 1017 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLN 1066
>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 767
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G+E+F++M + + A + S+ VA +AFDL+K + S G L Y +
Sbjct: 349 GYELFKEMKSKGHLIDRAIYGSLVESFVAGNKVGLAFDLLKDLVSSGYRADLGMYNNLIE 408
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G C L +KAY++ + G+ P+ + LL +AK++++ + +L +++ L
Sbjct: 409 GLCNLNKVEKAYKLFQVTIQEGLEPDFLSVKPLLLAYAEAKRMEEFFMLLEKMKKL---- 464
Query: 294 SESTFKIIED 303
F +I+D
Sbjct: 465 ---GFPVIDD 471
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + AL +Y+D R +G+ + +L+ CK G
Sbjct: 232 MDALVKTGHLDLALSVYNDFREDGLVEESVTFMILIKGL-CKGGK--------------- 275
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ E+ +M P+ +T++ R+ V + + + + K+MK + P + +YG
Sbjct: 276 IDEMLEVLGRMREKLCKPDVFAYTALVRIMVKEGNLDGCLRVWKEMKRDRVDPDVMAYGT 335
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G K G + YE+ M G + + +L++ V KV +++L L
Sbjct: 336 IIGGLAKGGRVSEGYELFKEMKSKGHLIDRAIYGSLVESFVAGNKVGLAFDLLKDL 391
Score = 38.5 bits (88), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 1/101 (0%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPKLRSYGPALFGFCKLGNTDKAYE 246
P+E F + R+ + + +M++ FG+ P++ Y + K G+ D A
Sbjct: 187 PSEKQFEILIRMHSDAGRGLRVYHVYDKMRNKFGVKPRVFLYNRIMDALVKTGHLDLALS 246
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
V E G+V E L+K K+D++ E+L R+R
Sbjct: 247 VYNDFREDGLVEESVTFMILIKGLCKGGKIDEMLEVLGRMR 287
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V EA +L D +S GI + Y+ L++ C + ++ EI
Sbjct: 655 GNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAK----------------EI 698
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M + + PN +T++ ++ ++ +M S GI P +Y + G+CK
Sbjct: 699 FEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCK 758
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
LGN +A E+ M +G+ P+ +AL K
Sbjct: 759 LGNMKEARELLNEMIRNGIAPDTVTYNALQK 789
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 111 LDMCS-------KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGD 162
+D+CS +R AL++ S I +S L+ +C C+ SE+ E
Sbjct: 430 MDVCSYVIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELW- 488
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
F+ + N T ++ + + E F+++KQM G+
Sbjct: 489 ---------------FKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLL 533
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
SY +FG CK G ++A+++ M + P+ + L+K D K+D V+ +
Sbjct: 534 LDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRL 593
Query: 283 LHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGV---LNWDVSKV 323
LH + + T+ ++ + + D E V N D KV
Sbjct: 594 LHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKV 637
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 16/188 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + + RL +A+ G + + Y +LL E DR D+ +
Sbjct: 585 GKIDDVHRLLHEAKEYGFVPNVYTYALLL---------EGYCKADRIEDA-------VKF 628
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ + +KV+ + + + + AF L MKS GI P +Y + G C
Sbjct: 629 FKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCC 688
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
+G D+A E+ M G++P +AL+ ++D V IL + + + ++ T
Sbjct: 689 IGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKIT 748
Query: 298 FKIIEDWF 305
+ I+ D +
Sbjct: 749 YTIMIDGY 756
>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
javanica]
Length = 431
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + PN TFT++ ++A ++ KQM S + P +Y +G
Sbjct: 233 ELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGL 292
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G+ ++A+ + M G+ P++ + L+ +D +E HR R + +
Sbjct: 293 CKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFE--HRKRMIQENI 348
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
EI++QM++ + P+ T+ ++ K D A L+ +M G+ P +Y +
Sbjct: 266 AMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLID 325
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G CK G+ D A+E M + + ++ +AL+
Sbjct: 326 GCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALI 359
>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like isoform 1 [Glycine max]
gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like isoform 2 [Glycine max]
Length = 522
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 6/146 (4%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
V PN T + R + + FD++++M G+ P + S+ + G+C G A
Sbjct: 221 VSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKGLFGLAL 280
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+V + M E+GV P + L+ +K+ + + + ++ S T+ + + +
Sbjct: 281 KVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGY 340
Query: 306 DSVDAAEIGVLNWDVSKVREGIVRGG 331
V +E+GV +V E ++R G
Sbjct: 341 GQVGDSEMGV------RVYEEMMRNG 360
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 14/167 (8%)
Query: 136 TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-LKRGF----------EIFQQMITD 184
TL + N L+ + K S ENG + N L GF +F +M
Sbjct: 265 TLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEANRVFNEMKVA 324
Query: 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
VDP+ T+ ++ D EM + ++M G+ + +Y + G CK G T KA
Sbjct: 325 NVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGLCKDGKTKKA 384
Query: 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ + +VP SAL+ ++ + I R++VR
Sbjct: 385 AGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLI---YRSMVR 428
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 21/162 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG-----DREN----DSN 168
GD +R+Y++ NG+ YN L+ + CK G G D+EN S
Sbjct: 344 GDSEMGVRVYEEMMRNGLKADILTYNALI-LGLCKDGKTKKAAGFVRELDKENLVPNAST 402
Query: 169 LGL-----------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+R F I++ M+ PN TF + ED + A +++ M
Sbjct: 403 FSALITGQCVRNNSERAFLIYRSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDML 462
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ P L + G C+ G A + + M ++P+
Sbjct: 463 GRLMSPDLSTMSELCDGLCRCGKNQLALALCSEMEVRRLLPD 504
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFE 176
G+ ALR+ D R G + Y L +C CK ++ F
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTEL--ICGFCKISK---------------MESAFG 516
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ D + PNE T+T++ E + A L++ MK G P +++Y + G
Sbjct: 517 LFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLT 576
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K N A E+ M E G+ P +A++
Sbjct: 577 KQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 607
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK +F +M D V PN T+ ++ + V + AF ++ M G P + +Y
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G+C LG+ KA V +M + G + ++K D+ IL +R
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMR 487
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++F QM + +PN T++++ AFDL+++M GI P +
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ C +G + A+ + M G P +AL+ + + + HR+
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 381
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 52/111 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ + MI + + PN T+T++ +A ++ +M G P L +Y +
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G ++A + A + G++P+E +++ + + KV+ + L R+
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRM 696
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K+ + M+ N T+ ++ + + A ++ M+ G P SY
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GFCK+ + A+ + M + G+ P E +AL+ +K+D +L ++
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 49/119 (41%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N +K F + M + PN T+ + + DP+ A ++ M G L +
Sbjct: 403 NRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT 462
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y + G+C GNT A + M + G P+E + L+ K++ + + + +
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +++ ++ P+ T+TS+ K D + A + QM G P +Y + G C
Sbjct: 237 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296
Query: 237 KLGNTDKAYEVDAHMGESGVVP 258
G ++A+++ M G++P
Sbjct: 297 DSGRVNEAFDLIREMILHGILP 318
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F++ ++MI + P T T E A+ L MK+ G P + +Y
Sbjct: 301 VNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTA 360
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C G A + M GV P +AL+ + V+ +++ + +L+ +
Sbjct: 361 LISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G V +A+ + S G + YN++L C +E E+ +
Sbjct: 240 QEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL---KGLCTAERWEDAE------------- 283
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M PN TF + K E A ++++Q+ +G P SY P L F
Sbjct: 284 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAF 343
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK DKA M G P+ + LL + +VD E+LH+L+
Sbjct: 344 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLK 395
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K E+ +M++ + P+ T++++A ++ E A +++ GI P Y
Sbjct: 420 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 479
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G CK T A ++ A+M +G +P E + L++
Sbjct: 480 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIE 516
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 47/117 (40%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
G K+ ++ +M P+ T+ V + + A + +K + S+G P SY
Sbjct: 208 GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 267
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C + A E+ MG+ G P + L+ V+ E+L ++
Sbjct: 268 IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 324
>gi|56783835|dbj|BAD81247.1| fertility restorer -like [Oryza sativa Japonica Group]
Length = 1090
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-------- 154
P VLR + + G + +A +A NG ++ Y++L+ CK G
Sbjct: 685 PVSVLREAVYTLKREGRILDACNFLKEAEQNGYSVDLAMYSILVEGL-CKSGYLEKALDL 743
Query: 155 -SESSENGDREN----DSNLG-------LKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202
E G + N +S L L F +F + + +V P T+ S+ A+
Sbjct: 744 CESMKEEGIQPNIVIHNSVLNGLCQQGCLTEAFRLFDYLESSEVLPTLVTY-SILIAALC 802
Query: 203 KED-PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+E + A +L ++M + GI P R Y + G+C G T+KA E+ +H E + P+
Sbjct: 803 REGFLDDAHELFQKMSTKGIKPTTRVYNLLISGYCNYGLTEKALELISHFEEIFLFPDAI 862
Query: 262 ELSALL 267
+ A++
Sbjct: 863 TIGAII 868
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +G + M+ + + ++T+V + E + +M P L +Y
Sbjct: 255 LMKGLREHRVMLDKGIAADVVSYTTVIDGLCRERSVEKVMGFLDEMNRRDAKPNLITYTS 314
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GFCK D A+ + + ++GVV +E S L+ +D+ + +L +
Sbjct: 315 LIGGFCKRNRLDDAFSIVRKLEQTGVVVDEYVYSILIDNLCKKGYLDRAFSLLEEM 370
>gi|297733848|emb|CBI15095.3| unnamed protein product [Vitis vinifera]
Length = 815
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 58/116 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ +F +MI + V P+ AT+ + ++ K++ E A + ++M G P +Y
Sbjct: 242 VRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNV 301
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +G +KA E A M + P + +++ DA++++K + ++
Sbjct: 302 VIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKM 357
Score = 46.2 bits (108), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 16/160 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V +A R++++ G+ S YN + V C ++ EN +
Sbjct: 240 GEVRKAQRVFNEMIGEGVLPSVATYNAFIQVL---CKKDNVENA-------------ISV 283
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M+ PN T+ V R E A + + +MK P ++ Y + FC
Sbjct: 284 FEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCD 343
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+K V MG++ +P + L+ KK D
Sbjct: 344 AEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSD 383
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK +E F QM K + + T+T+V + A + +M G+ P + +Y
Sbjct: 207 LKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNA 266
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK N + A V M G +P + +++ +++K E + R++
Sbjct: 267 FIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDE 326
Query: 291 RQVSESTFKIIEDWFDSVDAAEI 313
+ + + ++ +F DA EI
Sbjct: 327 CEPNVQIYNVVIRYF--CDAEEI 347
>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1604
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 34/96 (35%)
Query: 399 QEWLGRHGPFDAVIDGANVGLVN----QHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKG 454
+EWL + + A++DGAN+ L + FS QL
Sbjct: 692 KEWLEANKDYRAIVDGANIALYQPNFAEGGFSLTQL------------------------ 727
Query: 455 RVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDW 490
+ P N+ L++ WR GALYT+P GSNDDW
Sbjct: 728 ------MENPSNRHLIETWRTNGALYTSPSGSNDDW 757
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M + P+ T+ S+ + + A L ++ G+ P + +Y + G+C+
Sbjct: 1248 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCR 1307
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
LG+ ++A + MGE G +P + L+K S++ + + E +
Sbjct: 1308 LGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEM 1356
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA +++D + G YN+L+ G SE D ++F +M
Sbjct: 437 EARKVFDIMVNKGCAPDVLSYNILIK------GYCKSERIDEAK----------QLFDEM 480
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ PN T T++ P A +L K+M S G PP L +Y L GFCK G+
Sbjct: 481 SHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHL 540
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+A + + +S + P LL A K++ E+ L
Sbjct: 541 DEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSL 585
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
CS R + EA +L++ G + YN+L+ CK G G
Sbjct: 196 CS-RSQMDEAQKLFNIMDRKGCAPNVRSYNILIN-GHCKSGRIDEAKG------------ 241
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ +M + P+ T++++ R P+ A +L+K+M S+G+ P L +Y L
Sbjct: 242 ---LLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLD 298
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G CK G+ D+A+E+ M ES + P + L++ K++ E+ L Q
Sbjct: 299 GLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQP 358
Query: 294 SESTFKII 301
+ T+ ++
Sbjct: 359 TVVTYTVM 366
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 64/159 (40%), Gaps = 25/159 (15%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS----CKCGSESSENGDRENDSN 168
+CSK + +A++L+D+ G H +V+ Y CK G+ +
Sbjct: 20 LCSK-AKIMDAVKLFDEMVKMG-----HEPDVITYSTIINGLCKMGNTT----------- 62
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
++ ++M PN + ++ A D +M GIPP + +Y
Sbjct: 63 ----MALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTY 118
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
L GFC LG ++A + M E V+P + + L+
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILI 157
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 168 NLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
NLG + +F+QM+ V PN+ TFT + K A+ + + M G+ P +
Sbjct: 127 NLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVY 186
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+Y + G+C D+A ++ M G P + L+ + ++D+ +L +
Sbjct: 187 TYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEM 246
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 55/127 (43%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F+ M ++P+ T+ ++ ++ + A L M G P +RSY + G C
Sbjct: 172 VFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHC 231
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G D+A + A M + P+ S L++ + + E+L + + +
Sbjct: 232 KSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLI 291
Query: 297 TFKIIED 303
T+ I+ D
Sbjct: 292 TYSIVLD 298
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 82/199 (41%), Gaps = 16/199 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G + +A RL++ G H N ++Y + +G +E+
Sbjct: 462 IDGLGKKGKIDDAYRLFEKMLDAG-----HDANPIIYTSLIR---NFFMHGRKED----- 508
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
G +I+++MI P+ + + E + + MKSFG P +RSY
Sbjct: 509 ---GHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSI 565
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K G + + M + G + +A++ + KVDK YE+L ++
Sbjct: 566 LIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKH 625
Query: 291 RQVSESTFKIIEDWFDSVD 309
+ +T+ I D +D
Sbjct: 626 VHPTVATYGSIVDGLAKID 644
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 19/196 (9%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+L H L +K G E ++ G L YN ++ CK G
Sbjct: 565 ILIHGL---TKAGQARETSNIFQAMSQQGFALDARAYNAVVDGL-CKSGK---------- 610
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+ + +E+ ++M V P AT+ S+ + + A+ L ++ KS GI +
Sbjct: 611 -----VDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNV 665
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
Y + GF K+G D+AY + M + G+ P ++L+ V +++D+
Sbjct: 666 ILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQS 725
Query: 286 LRTLVRQVSESTFKII 301
++ + + T+ I+
Sbjct: 726 MKEMKCSPNTYTYSIL 741
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 18/168 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-LKRGFEIFQQ 180
EA L+++A+S GI L NV+LY + + +G + + I ++
Sbjct: 648 EAYMLFEEAKSKGIEL-----NVILY------------SSLIDGFGKVGRIDEAYLILEE 690
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+ + PN T+ S+ V E+ + A + MK P +Y + G C++
Sbjct: 691 MMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQK 750
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+KA+ M + G++P + ++ + Y + R +T
Sbjct: 751 YNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKT 798
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
FQ M K PN T++ + + AF ++M+ G+ P + +Y + G K
Sbjct: 723 FQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAK 782
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+GN AY + +G +P+ +AL++ +A + + Y++ R
Sbjct: 783 VGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETR 832
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/197 (18%), Positives = 77/197 (39%), Gaps = 6/197 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++G IF+ M + P+ +++ + ++ + M G R+Y
Sbjct: 541 VEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNA 600
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G DKAYEV M V P +++ ++D+ Y + ++
Sbjct: 601 VVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKG 660
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERT 350
+++ + + D F V + L + E +++ G + W V+
Sbjct: 661 IELNVILYSSLIDGFGKVGRIDEAYL------ILEEMMKKGLTPNVYTWNSLMDALVKTE 714
Query: 351 QIDENGVCCSCNERLVC 367
+IDE +C + + C
Sbjct: 715 EIDEALICFQSMKEMKC 731
>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like, partial [Glycine max]
Length = 594
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 36/230 (15%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRG 174
K G + EA R+ D+ G+ N +L+ +C K E+ E + KRG
Sbjct: 255 KAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKAR------KRG 308
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ + +E T+ ++ + + A L ++MK GI P + SY P + G
Sbjct: 309 YIL-----------DEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRG 357
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR--------- 285
C G TD+A + + E G+VP+E + ++ VDK ++ ++
Sbjct: 358 LCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKPD 417
Query: 286 -------LRTLVR-QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKV-REG 326
LR L R + E FK+ W ++ ++ N +S + +EG
Sbjct: 418 IFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEG 467
>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
Length = 454
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Query: 169 LGLKRGFE----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
LG +RGF+ + Q+M V PN T+T+ + ++ A+ ++M GI P
Sbjct: 294 LGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPD 353
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ +Y + GFCK D A ++ +M +SG+ P + L+ KV+ + E+LH
Sbjct: 354 MVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLH 413
Query: 285 RLRTLVRQVSESTFK-IIEDWF--DSVDAAEIGVLNWDVSK 322
+ + RQ +T+ ++ F VDAA LN +S+
Sbjct: 414 TMVSRGRQPDVATWSTLVAGLFRVGQVDAA-YSFLNLAMSQ 453
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 16/169 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V +A L+ GIT S Y L+ V C E++ +
Sbjct: 88 KNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETA----------------Y 131
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ Q M + K P ++ S+ + A+ L ++MK G P +Y + G
Sbjct: 132 GLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGL 191
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
C +A ++ M E+ P++ +AL++ ++ + + +
Sbjct: 192 CVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQ 240
Score = 42.0 bits (97), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F M + P++ T+T++ + E A+ L++ M S P + SY + G C
Sbjct: 98 LFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLC 157
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKKVDKVYEILHRLRTLVRQVSE 295
K D+AY++ M +G P+ + L+ L V + LH + L+ + E
Sbjct: 158 KNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQR--------LHEAKDLLTVMVE 209
Query: 296 STFK 299
++F+
Sbjct: 210 NSFQ 213
>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 907
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G E+ +M+ + P+EA +S+ + E A +LVK++ FG+ P + Y +
Sbjct: 316 GLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALID 375
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK N D+A + MG+ G+ P + S L+ + K+D L +
Sbjct: 376 SLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEM 428
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+DM +RG + AL + G+ S + YN L+ CK G S+
Sbjct: 409 IDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLIN-GHCKFGDISAAE---------- 457
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ +MI K++P T+TS+ +K A L +M GI P + ++
Sbjct: 458 -----SLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTT 512
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G + G A ++ M E V P + +++ + + K +E L+ +
Sbjct: 513 LLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEM 568
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 77/188 (40%), Gaps = 17/188 (9%)
Query: 100 RESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS 158
R SP E + ++ KRG V EAL L G++ + YN L+ +S
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALI---------DSL 377
Query: 159 ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
G +++ L +F +M + PN+ T++ + + + + A + +M
Sbjct: 378 CKGRNFDEAEL-------LFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMID 430
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
G+ P + Y + G CK G+ A + A M + P ++L+ K++K
Sbjct: 431 MGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINK 490
Query: 279 VYEILHRL 286
+ H +
Sbjct: 491 ALRLYHEM 498
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 19/132 (14%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
CSK G + +ALRLY + GI S + + LL GL R
Sbjct: 483 CSK-GKINKALRLYHEMTGKGIVPSIYTFTTLL-----------------SGLFRAGLIR 524
Query: 174 -GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
++F +M V PN T+ + + + AF+ + +M GI P SY P +
Sbjct: 525 DAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLI 584
Query: 233 FGFCKLGNTDKA 244
G C G +A
Sbjct: 585 HGLCLTGQASEA 596
Score = 43.1 bits (100), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ E+ +MI D V P+ T+T++ + D + A +L M GI P +Y
Sbjct: 803 MEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNT 862
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G C G KA E+ M G+ P
Sbjct: 863 LIHGCCVAGEMGKATELRNEMLRQGLKP 890
>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Glycine max]
Length = 794
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 17/188 (9%)
Query: 102 SPEGVLRHKLDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
+P+ + L C + G ++E AL L+++ + G YN LL V
Sbjct: 247 APDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYG---------- 296
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+ K E+ +QM ++ P+ T+ S+ V E A L ++M G
Sbjct: 297 ------KSRRPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKG 350
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I P + +Y L GF G + A EV M + G P +AL+K+ D K +++
Sbjct: 351 IKPDVYTYTTLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMV 410
Query: 281 EILHRLRT 288
++ ++
Sbjct: 411 KVFKEIKV 418
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA R++ + + GI + + Y++++ C+ G + R
Sbjct: 1294 RAGNISEAERVFGEMKMAGIXPNVYTYSIVIDAL-CRSGQ---------------ITRAH 1337
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +MI DPN TF ++ R+ V E + QMK G PP +Y +
Sbjct: 1338 DVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESH 1397
Query: 236 CKLGNTDKAYEV 247
C+ N ++A ++
Sbjct: 1398 CRDDNLEEAVKI 1409
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F + D+ +P+ +TS+ + A + +MK GI P + +Y + C+
Sbjct: 1270 FFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCR 1329
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
G +A++V + M + G P + L+++ V A + +KV ++ ++++ L
Sbjct: 1330 SGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRL 1381
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S LG + +F +M K PN T+ + R+ K+ +M L K+M I P
Sbjct: 1432 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 1491
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSVDAKKVDKVYEILH 284
+Y + FC +G+ + AY M E + P P +L+ A ++ K E++
Sbjct: 1492 NTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVE 1551
Query: 285 RL 286
++
Sbjct: 1552 KM 1553
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V EA++ +DD + NG+ + Y+V++ C C +E +E G E F
Sbjct: 580 VEEAIQFWDDCKRNGMLPDVYTYSVMIDGC---CKAERTEEGQ-------------EFFD 623
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M++ V PN + + R MA +L + MK GI P +Y + G +
Sbjct: 624 EMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 683
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
++A + M G+ P +AL+
Sbjct: 684 RVEEAKLLFEEMRMEGLEPNVFHYTALI 711
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 32/260 (12%)
Query: 95 KKKARRESPEGVLRHK--LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K+ ++ P V+ + +D + G + +A+ + D S G++L+ YN L+
Sbjct: 343 KEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI---KGY 399
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQ------------------------QMITDKVDP 188
C + ++N +R L + GF + Q +M+ + P
Sbjct: 400 CKNGQADNAERLLKEMLSI--GFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP 457
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
T++ A +L Q + G R+ L G C+ G D+A+ +
Sbjct: 458 GGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQ 517
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
+ G V + + L+ KK+D+ + L + + T+ I+ ++
Sbjct: 518 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNM 577
Query: 309 DAAEIGVLNWDVSKVREGIV 328
+ E + WD K R G++
Sbjct: 578 NKVEEAIQFWDDCK-RNGML 596
>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
Length = 716
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G EA +L + S GI+ YN+ L CK G+ LK + +
Sbjct: 491 GSTSEAFQLTEVMISRGISSDTVTYNIFLDGL-CKSGN---------------LKDAYVL 534
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+ +M++D + P+ T+T + + A D+ M G+PP +Y + +C+
Sbjct: 535 WMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCR 594
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
GN AY M E GV P E + L+ + + Y+ H + ++ T
Sbjct: 595 RGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYT 654
Query: 298 FKIIED 303
+ ++ D
Sbjct: 655 YTLLID 660
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 16/153 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG + EA ++D +G+ S Y V ++ C+ G+ S G
Sbjct: 559 ERGRLREARDIFDGMLVSGLPPSAVTYTVFIHA-YCRRGNLYSAYG-------------- 603
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
FQ+M+ + V PNE T+ + +A+ +M G+ P +Y + G
Sbjct: 604 -WFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGN 662
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK GN ++A + + M + G+ P+ +AL K
Sbjct: 663 CKEGNWEEAIRLYSEMHQHGIHPDHCTHNALFK 695
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 25/190 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENGDREND 166
K G++ EAL L+ D + G+ S YN+LL C+ G E E G + +
Sbjct: 384 KAGNLKEALWLFGDLKRAGLAPSVLTYNILL-DGYCRLGDLEEARRFKQEMVEQGCQPDV 442
Query: 167 S-------------NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
S NL + R E F +M++ + P+ + + + AF L
Sbjct: 443 STYTILMNGSRKVRNLAMVR--EFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLT 500
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ M S GI +Y L G CK GN AY + M G+ P+ + L+ +
Sbjct: 501 EVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCER 560
Query: 274 KKVDKVYEIL 283
++ + +I
Sbjct: 561 GRLREARDIF 570
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ E RL +++G+ + ++VL+ CK ES + +D+N
Sbjct: 183 KIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGL-CK---ES-----KMDDAN------- 226
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ + + PN TFT++ ++A ++ +QM S + P L +Y ++G
Sbjct: 227 ELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGL 286
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ + ++ M G+ P++ + L+ + ++ +E R+
Sbjct: 287 CKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRM 337
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 77/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++ CK
Sbjct: 90 RLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHN-FCK 148
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G ++ +F + + P+ +F ++ + D + F L
Sbjct: 149 EGE---------------IRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + ++ + G CK D A E+ M ++G+VP + L+
Sbjct: 194 KSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 NGRVDLAMEIYRQM 267
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFE 176
G+ ALR+ D R G + Y L +C CK ++ F
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTEL--ICGFCKISK---------------MESAFG 516
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ D + PNE T+T++ E + A L++ MK G P +++Y + G
Sbjct: 517 LFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLT 576
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K N A E+ M E G+ P +A++
Sbjct: 577 KQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 607
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK +F +M D V PN T+ ++ + V + AF ++ M G P + +Y
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G+C LG+ KA V +M + G + ++K D+ IL +R
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMR 487
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++F QM + +PN T++++ AFDL+++M GI P +
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ C +G + A+ + M G P +AL+ + + + HR+
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRM 381
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 52/111 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ + MI + + PN T+T++ +A ++ +M G P L +Y +
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G ++A + A + G++P+E +++ + + KV+ + L R+
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRM 696
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K+ + M+ N T+ ++ + + A ++ M+ G P SY
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GFCK+ + A+ + M + G+ P E +AL+ +K+D +L ++
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 49/119 (41%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N +K F + M + PN T+ + + DP+ A ++ M G L +
Sbjct: 403 NRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT 462
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y + G+C GNT A + M + G P+E + L+ K++ + + + +
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +++ ++ P+ T+TS+ K D + A + QM G P +Y + G C
Sbjct: 237 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296
Query: 237 KLGNTDKAYEVDAHMGESGVVP 258
G ++A+++ M G++P
Sbjct: 297 DSGRVNEAFDLIREMILHGILP 318
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F++ ++MI + P T T E A+ L MK+ G P + +Y
Sbjct: 301 VNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTA 360
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C G A + M GV P +AL+ + V+ +++ + +L+ +
Sbjct: 361 LISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416
>gi|242078465|ref|XP_002444001.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
gi|241940351|gb|EES13496.1| hypothetical protein SORBIDRAFT_07g005650 [Sorghum bicolor]
Length = 824
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 84/184 (45%), Gaps = 17/184 (9%)
Query: 104 EGVLRH-KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
+GVL + +D K G++ EA++L ++ + G+ + HY L+ + G+
Sbjct: 403 DGVLYNITMDAYCKLGNMNEAVKLLNEMMAGGLVPDKIHYTCLI--------NGYCLKGE 454
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
EN +++F+QM+ + P+ T+ +A +DL++ M G+
Sbjct: 455 TEN--------AWQVFEQMLKANIKPDVVTYNILASGYSRNGAVIKVYDLLEHMVDQGLE 506
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P +YG A+ FC+ GN +A + + E G+ E S+++ + + D Y +
Sbjct: 507 PNSLTYGVAIACFCREGNLSEAEVLFNILEEKGIDNIEVLYSSMVCGYLYSGWTDHAYTL 566
Query: 283 LHRL 286
R+
Sbjct: 567 FLRV 570
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
++ + L K G V E + + R G+ L YN+ + CK G+
Sbjct: 371 IVGYLLQCLKKLGMVSEVIVYFQKFRDLGLHLDGVLYNITMDA-YCKLGN---------- 419
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+ ++ +M+ + P++ +T + K + E A+ + +QM I P +
Sbjct: 420 -----MNEAVKLLNEMMAGGLVPDKIHYTCLINGYCLKGETENAWQVFEQMLKANIKPDV 474
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+Y G+ + G K Y++ HM + G+ P
Sbjct: 475 VTYNILASGYSRNGAVIKVYDLLEHMVDQGLEP 507
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ QMI PN TF +V K E A +L+KQM G P L SY + G
Sbjct: 456 DLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDGL 515
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G TD+A E+ M G+ P S++ ++++V ++ ++
Sbjct: 516 GKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQ 567
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 113 MCSKRGDVFEALRLYDD-ARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL 171
+C + G V EALRL D S G YN +L G ++ R D
Sbjct: 198 VCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLK------GLCMAKRWGRVQD----- 246
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ ++M+ PN TF ++ E ++ QM G P +R Y
Sbjct: 247 -----LMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATV 301
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
L G CK G+ + A+E+ M G+ P + +LK A++ ++ E+L +
Sbjct: 302 LDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDC 361
Query: 292 QVSESTFKIIEDWF 305
+ + TF I+ D+F
Sbjct: 362 PLDDVTFNILVDFF 375
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKED-PEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+ M+ + PN ++S+A A++KE + ++ I Y +
Sbjct: 524 ALELLNVMVNKGMSPNTIIYSSIAS-ALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVI 582
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G TD+A E A+M SG +P E + L++ V + E+L L
Sbjct: 583 SSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTEL 636
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 18/151 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFE 176
G+ ALR+ D R G + Y L +C CK ++ F
Sbjct: 474 GNTTSALRILDLMRDGGCKPDEWSYTEL--ICGFCKISK---------------MESAFG 516
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M+ D + PNE T+T++ E + A L++ MK G P +++Y + G
Sbjct: 517 LFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLT 576
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K N A E+ M E G+ P +A++
Sbjct: 577 KQNNFSGAEELCKVMIEEGIFPNVVTYTAMI 607
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK +F +M D V PN T+ ++ + V + AF ++ M G P + +Y
Sbjct: 371 LKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNE 430
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G+C LG+ KA V +M + G + ++K D+ IL +R
Sbjct: 431 MIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMR 487
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 48/116 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++F QM + +PN T++++ AFDL+++M GI P +
Sbjct: 266 LDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTG 325
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ C +G + A+ + M G P +AL+ + + + HR+
Sbjct: 326 PIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 381
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 52/111 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ + MI + + PN T+T++ +A ++ +M G P L +Y +
Sbjct: 586 ELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G ++A + A + G++P+E +++ + + KV+ + L R+
Sbjct: 646 GQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRM 696
Score = 42.4 bits (98), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K+ + M+ N T+ ++ + + A ++ M+ G P SY
Sbjct: 442 KKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTEL 501
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GFCK+ + A+ + M + G+ P E +AL+ +K+D +L ++
Sbjct: 502 ICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMK 557
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +++ ++ P+ T+TS+ K D + A + QM G P +Y + G C
Sbjct: 237 IMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLC 296
Query: 237 KLGNTDKAYEVDAHMGESGVVP 258
G ++A+++ M G++P
Sbjct: 297 DSGRVNEAFDLIREMILHGILP 318
Score = 40.4 bits (93), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 49/119 (41%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N +K F + M + PN T+ + + DP+ A ++ M G L +
Sbjct: 403 NRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVT 462
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y + G+C GNT A + M + G P+E + L+ K++ + + + +
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEM 521
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F++ ++MI + P T T E A+ L MK+ G P + +Y
Sbjct: 301 VNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTA 360
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C G A + M GV P +AL+ + V+ +++ + +L+ +
Sbjct: 361 LISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLM 416
>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Glycine max]
Length = 903
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
+L +++ F+++ +MI + + PN TFT++ + A +L ++ I P +
Sbjct: 483 DLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVT 542
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y + G+C+ G DKA+E+ M + G+VP+ L+ +V K + + L
Sbjct: 543 YNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDL 601
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 18/149 (12%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIF 178
V +A +LY+ NGIT + + + L+ +CS +E+SE +F
Sbjct: 486 VQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASE-----------------LF 528
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+++ K+ P E T+ + + AF+L++ M G+ P +Y P + G C
Sbjct: 529 DELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCST 588
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALL 267
G KA + + + V E SALL
Sbjct: 589 GRVSKAKDFIDDLHKQNVKLNEMCYSALL 617
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 34/131 (25%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
K+ FE + M+T++ PN T+T++ + + A L K+M++ +PP +YG
Sbjct: 696 FKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGC 755
Query: 231 AL----------------------------------FGFCKLGNTDKAYEVDAHMGESGV 256
L GFCKLG +A +V + M E+G+
Sbjct: 756 FLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGI 815
Query: 257 VPEEPELSALL 267
P+ S L+
Sbjct: 816 FPDCVTYSTLI 826
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 26/195 (13%)
Query: 116 KRGDVFEALRLYDDA-----RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
K GD+ +A LY + R NGIT S +L C+ G
Sbjct: 377 KGGDLDKAELLYSNMSLMNLRPNGITYS------ILIDSFCRSGR--------------- 415
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L F +MI D + + S+ D A L +M + G+ P ++
Sbjct: 416 LDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTS 475
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK KA+++ M ++G+ P +AL+ K+ + E+ L
Sbjct: 476 LISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERK 535
Query: 291 RQVSESTFKIIEDWF 305
+ +E T+ ++ + +
Sbjct: 536 IKPTEVTYNVLIEGY 550
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD +K G++ EA+ L+ A G+ + +N+++ CK G
Sbjct: 757 LDNLTKEGNMKEAIGLHH-AMLKGLLANTVTHNIIIR-GFCKLGR--------------- 799
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ +M + + P+ T++++ + + L M + G+ P L +Y
Sbjct: 800 FHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNL 859
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL 263
++G C G DKA+E+ M G++P+ L
Sbjct: 860 LIYGCCVNGELDKAFELRDDMLRRGIIPDNKYL 892
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 34/176 (19%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL- 169
+D K +V EA L+ + S G+ YN L++ C CK GD E NL
Sbjct: 636 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGC-CK-------EGDMEKAMNLF 687
Query: 170 --GLKRGF-----------------------EIFQQMITDKVDPNEATFTSVARLAVAKE 204
L++GF ++FQ+MI ++ P+ T+T+V
Sbjct: 688 REMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAG 747
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
E A L K+M+ + +Y ++G+ KLG + + + + M GV P+E
Sbjct: 748 KMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDE 803
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GD+ E LR+ D S GI ++ YNVL++ CK G
Sbjct: 251 IDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGL-CKFGK--------------- 294
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ EI + MIT PN TF + + + A +L+ +M+ + P SYG
Sbjct: 295 MEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 354
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G C + A ++ M SG+ P S L+ ++++ +L
Sbjct: 355 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLL 407
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G+V +A L+D+ GI + YN L+ CK G ++R
Sbjct: 571 KQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGL-CKSGD---------------IQRAR 614
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F M ++P+ T++++ E+ AF L +M S G+ P Y + G
Sbjct: 615 KLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGC 674
Query: 236 CKLGNTDKAYEVDAHMGESG 255
CK G+ +KA + M + G
Sbjct: 675 CKEGDMEKAMNLFREMLQKG 694
Score = 46.2 bits (108), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 62/144 (43%), Gaps = 16/144 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G + EA + +D+ +G+ + Y VL+ NG + + L
Sbjct: 465 SKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI-------------NGHFKAGN---LMEA 508
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
IF+ + V P+ T ++ + + A + ++K G+ P + +Y + G
Sbjct: 509 LSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 568
Query: 235 FCKLGNTDKAYEVDAHMGESGVVP 258
FCK G +KA+E+ M G+ P
Sbjct: 569 FCKQGEVEKAFELHDEMCLKGIAP 592
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 56/116 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++F ++ + P+ T++S+ + + E AF+L +M GI P + Y
Sbjct: 540 VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 599
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK G+ +A ++ M E G+ P+ S ++ ++ V + + + H +
Sbjct: 600 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM 655
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V EAL+++ + + G+ Y+ L+ CK G +++ F
Sbjct: 536 KNGRVQEALKVFSELKEKGLVPDVFTYSSLIS-GFCKQGE---------------VEKAF 579
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M + PN + ++ D + A L M G+ P +Y + G+
Sbjct: 580 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 639
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK N +A+ + M GV P +AL+
Sbjct: 640 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 671
Score = 42.0 bits (97), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
F +F++M+ V P+E T+ V +++ AF L ++ G+ K + +
Sbjct: 788 FALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITA 847
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK + +A ++ MGE G+ P S L++ +A K+D+ + +++L
Sbjct: 848 LCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSL 902
Score = 40.4 bits (93), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 74/188 (39%), Gaps = 21/188 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---------ESSENGDREN 165
+ G + EA RL D +G+ YN ++ C K G E G + +
Sbjct: 395 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS-CLSKAGKMEEASTYLLEIQGRGLKPD 453
Query: 166 DSNLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
G + + F +M+ + PN +T + + A + +
Sbjct: 454 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR 513
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+ + G+ P +++ + G K G +A +V + + E G+VP+ S+L+
Sbjct: 514 HLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG 573
Query: 275 KVDKVYEI 282
+V+K +E+
Sbjct: 574 EVEKAFEL 581
>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 686
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 99 RRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
R+ SP V + L + K G FEA LYD+ GI + YN ++
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI----------- 365
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+G + D L ++F M T P+ TFT++ + + +L+ +M
Sbjct: 366 --DGFCKQDR---LDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 420
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ +Y + GFC +G+ + A ++ M SGV P+ + LL D K+
Sbjct: 421 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 480
Query: 278 KVYEILHRLR 287
E+ ++
Sbjct: 481 DALEMFKAMQ 490
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ Q+M+ K+ PN T+ ++ V + A +L +M GI P +Y + GFC
Sbjct: 310 LLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFC 369
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K D A ++ M G P+ + L+ AK++D E+LH +
Sbjct: 370 KQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V EA++ +DD + NG+ + Y+V++ C C +E +E G E F
Sbjct: 591 VEEAIQFWDDCKRNGMLPDVYTYSVMIDGC---CKAERTEEGQ-------------EFFD 634
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M++ V PN + + R MA +L + MK GI P +Y + G +
Sbjct: 635 EMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 694
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
++A + M G+ P +AL+
Sbjct: 695 RVEEAKLLFEEMRMEGLEPNVFHYTALI 722
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 32/260 (12%)
Query: 95 KKKARRESPEGVLRHK--LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K+ ++ P V+ + +D + G + +A+ + D S G++L+ YN L+
Sbjct: 354 KEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI---KGY 410
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQ------------------------QMITDKVDP 188
C + ++N +R L + GF + Q +M+ + P
Sbjct: 411 CKNGQADNAERLLKEMLSI--GFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP 468
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
T++ A +L Q + G R+ L G C+ G D+A+ +
Sbjct: 469 GGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQ 528
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
+ G V + + L+ KK+D+ + L + + T+ I+ ++
Sbjct: 529 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNM 588
Query: 309 DAAEIGVLNWDVSKVREGIV 328
+ E + WD K R G++
Sbjct: 589 NKVEEAIQFWDDCK-RNGML 607
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GDV A +L+ + G S YNVLL+ CG + G
Sbjct: 360 RTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGL-LLCGRAKAAMG-------------- 404
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M +V P T+ +V V E A ++++M+S G+ P + P + GF
Sbjct: 405 -VMRRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGF 463
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CKLG D+A V M +G+ P SA++
Sbjct: 464 CKLGEVDRASRVWDTMVAAGIKPNVVLYSAMI 495
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 28/178 (15%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS----CKCGSESSENGDRENDSNLGL 171
K G+V A R++D + GI NV+LY +CG + ++ L
Sbjct: 465 KLGEVDRASRVWDTMVAAGI-----KPNVVLYSAMIDGLARCG--------KMTEAEL-- 509
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+F++MI K PN T++S+ R D A + M G P +Y
Sbjct: 510 -----LFREMIEAKCVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVL 564
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK----VYEILHR 285
+ G C +G + A V HM G VP+ ++++K + VD Y++L R
Sbjct: 565 INGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLAR 622
>gi|356544457|ref|XP_003540667.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 711
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K V EA L+ + ++ GI ++ +N+L+Y S K E E
Sbjct: 381 MDAYCKSNRVEEAEGLFIEMKTKGIKHTEATFNILMYAYSRKMQPEIVE----------- 429
Query: 171 LKRGFEIFQQMITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
++ +M + PN ++T ++ K +MA D +MK GI P SY
Sbjct: 430 -----KLMAEMQDAGLKPNAKSYTCLISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYT 484
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL---KLSVDAKKVDKVYEILHRL 286
+ + G +KAY +M G+ P +ALL + + D + + K+++++ R
Sbjct: 485 ALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRY 544
Query: 287 RTLVRQVSESTFKIIEDWF 305
+ + + TF + D F
Sbjct: 545 KV---EGTRVTFNTLVDGF 560
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V EA++ +DD + NG+ + Y+V++ C C +E +E G E F
Sbjct: 604 VEEAIQFWDDCKRNGMLPDVYTYSVMIDGC---CKAERTEEGQ-------------EFFD 647
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M++ V PN + + R MA +L + MK GI P +Y + G +
Sbjct: 648 EMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 707
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
++A + M G+ P +AL+
Sbjct: 708 RVEEAKLLFEEMRMEGLEPNVFHYTALI 735
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 32/260 (12%)
Query: 95 KKKARRESPEGVLRHK--LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K+ ++ P V+ + +D + G + +A+ + D S G++L+ YN L+
Sbjct: 367 KEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI---KGY 423
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQ------------------------QMITDKVDP 188
C + ++N +R L + GF + Q +M+ + P
Sbjct: 424 CKNGQADNAERLLKEMLSI--GFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP 481
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
T++ A +L Q + G R+ L G C+ G D+A+ +
Sbjct: 482 GGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQ 541
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
+ G V + + L+ KK+D+ + L + + T+ I+ ++
Sbjct: 542 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNM 601
Query: 309 DAAEIGVLNWDVSKVREGIV 328
+ E + WD K R G++
Sbjct: 602 NKVEEAIQFWDDCK-RNGML 620
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F +M+ PN T++S+ + ++A ++ +M P + Y
Sbjct: 330 LDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTE 389
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G CK+G TD+AY + M E G P +A++ A +VD+ E+L + +
Sbjct: 390 MVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTS 447
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + + ++M++ P+ +T++ V E AF L ++MK GI P + +Y
Sbjct: 103 FEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTT 162
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L FCK+G ++A M + G P +AL+ + +K+ + EI +
Sbjct: 163 LLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMM 218
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V +A +L+ + + NGIT + Y LL DR L +++ F
Sbjct: 138 VEKAFQLFQEMKRNGITPDVYTYTTLL---------------DRFCKVGL-IEQARNWFD 181
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M D PN T+T++ + A ++ + M S G P + +Y + G CK G
Sbjct: 182 EMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAG 241
Query: 240 NTDKAYEVDAHMGESGV-VPE 259
T+KA ++ A M V +P+
Sbjct: 242 ETEKACQIYARMKNDKVDIPD 262
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 172 KRGFEIFQQMITDKVD-----------------PNEATFTSVARLAVAKEDPEMAFDLVK 214
++ +I+ +M DKVD PN T+ ++ + A DL++
Sbjct: 244 EKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLE 303
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
M G P Y + GFCK+G D+A EV M G P S+L+ K
Sbjct: 304 TMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDK 363
Query: 275 KVDKVYEILHRL 286
++D ++L ++
Sbjct: 364 RLDLALKVLTKM 375
>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 17/195 (8%)
Query: 165 NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
N+S+L LK ++ + ++PN TF+ + R K+DP A ++ QM G P
Sbjct: 155 NESDLVLK----LYSGLSCYSLEPNSWTFSIMVRCHCKKKDPGEAKRVLDQMMQKGFNPN 210
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ + + FCK+G ++V M G P + LLK ++D+ +E++
Sbjct: 211 VATLTILINSFCKMGQLQNTFQVFEVMDRIGCKPNIQTYNCLLKGMCYVGRIDEAFELME 270
Query: 285 RLRTLVRQVSESTFKIIEDWFDSV-----------DAAEIGVLNWDVS--KVREGIVRGG 331
++ + T+ + D F V +A E+G+ V+ + +G + G
Sbjct: 271 DIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNEAMEMGLAPNVVTFNTLLDGYAKEG 330
Query: 332 GGWHGQGWLGSGKWR 346
G G L K R
Sbjct: 331 RPLKGFGVLKLMKQR 345
>gi|326527577|dbj|BAK08063.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 368
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 27/205 (13%)
Query: 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
+P L D C +RGD E +L +G+ H YN L+ C S+S G
Sbjct: 138 APRPALLALADACCRRGDPREIGQLLPVLADHGVRADAHVYNALM---KAHC-SDSDTAG 193
Query: 162 ---------DRENDSNL--------GLKRGFEIFQQ------MITDKVDPNEATFTSVAR 198
D D +L GL R + + M + + P+ T+TS+
Sbjct: 194 LLGVLRRMKDDGVDPDLVTYNTLVYGLARAGLVAKARTYPGAMAAEGLFPDVITYTSLMN 253
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
K D A L+ +M++ G P R+Y L G CK D A EV + +G+
Sbjct: 254 GMCVKGDALGALKLLDEMEANGCEPNDRTYNTLLMGLCKNRKLDNAVEVYKSIVGAGMKL 313
Query: 259 EEPELSALLKLSVDAKKVDKVYEIL 283
E P + ++ A +V YE+
Sbjct: 314 EPPAYATFIRALCRAGRVPDAYEVF 338
>gi|125569816|gb|EAZ11331.1| hypothetical protein OsJ_01195 [Oryza sativa Japonica Group]
Length = 943
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 23/186 (12%)
Query: 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-------- 154
P VLR + + G + +A +A NG ++ Y++L+ CK G
Sbjct: 538 PVSVLREAVYTLKREGRILDACNFLKEAEQNGYSVDLAMYSILVEGL-CKSGYLEKALDL 596
Query: 155 -SESSENGDREN----DSNLG-------LKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202
E G + N +S L L F +F + + +V P T+ S+ A+
Sbjct: 597 CESMKEEGIQPNIVIHNSVLNGLCQQGCLTEAFRLFDYLESSEVLPTLVTY-SILIAALC 655
Query: 203 KED-PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+E + A +L ++M + GI P R Y + G+C G T+KA E+ +H E + P+
Sbjct: 656 REGFLDDAHELFQKMSTKGIKPTTRVYNLLISGYCNYGLTEKALELISHFEEIFLFPDAI 715
Query: 262 ELSALL 267
+ A++
Sbjct: 716 TIGAII 721
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +G + M+ + + ++T+V + E + +M P L +Y
Sbjct: 108 LMKGLREHRVMLDKGIAADVVSYTTVIDGLCRERSVEKVMGFLDEMNRRDAKPNLITYTS 167
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GFCK D A+ + + ++GVV +E S L+ +D+ + +L +
Sbjct: 168 LIGGFCKRNRLDDAFSIVRKLEQTGVVVDEYVYSILIDNLCKKGYLDRAFSLLEEM 223
>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
Length = 683
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 17/190 (8%)
Query: 99 RRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
R+ SP V + L + K G FEA LYD+ GI + YN ++
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI----------- 365
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+G + D L ++F M T P+ TFT++ + + +L+ +M
Sbjct: 366 --DGFCKQDR---LDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMP 420
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ +Y + GFC +G+ + A ++ M SGV P+ + LL D K+
Sbjct: 421 RRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLK 480
Query: 278 KVYEILHRLR 287
E+ ++
Sbjct: 481 DALEMFKAMQ 490
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ Q+M+ K+ PN T+ ++ V + A +L +M GI P +Y + GFC
Sbjct: 310 LLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFC 369
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K D A ++ M G P+ + L+ AK++D E+LH +
Sbjct: 370 KQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEM 419
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM--KSFGIPPKLRSY 228
L+ E++Q+++ D + P+ T+ +V + + A +L+++M + + P + +Y
Sbjct: 367 LEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTY 426
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G K+G ++A+++ A M ++GV+P+ ++L++ A KV + E+L +
Sbjct: 427 SMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEM 484
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 22/168 (13%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSE---NGDRENDS---------- 167
EAL LY +GI S YN ++ +C K E+ E R +
Sbjct: 369 EALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSM 428
Query: 168 ------NLGLK-RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+G++ R F++ +MI + V P+ T+TS+ + A +L+++M G
Sbjct: 429 IIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAG 488
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
I P +YG + C+ + D A+++ M +G P E A+ K
Sbjct: 489 IFPDDHTYGTLVQILCR-SDVDAAWDLLQEMMRNGHTPNEFTFKAVEK 535
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A+ L + S G+T YN LL + C + SE EIF+ M
Sbjct: 559 AIELVNRMWSQGMTPDVITYNTLL---NGLCKTAKSE-------------EVMEIFKAMT 602
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
PN T+ ++ + A DL+ +MKS G+ P + S+G + GFCK+G+ D
Sbjct: 603 EKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLD 662
Query: 243 KAY 245
AY
Sbjct: 663 GAY 665
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 15/167 (8%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V EA+ L + +S G+T + L+ CK G + D GL RG E +
Sbjct: 626 VNEAVDLLGEMKSKGLTPDVVSFGTLI-TGFCKVG---------DLDGAYGLFRGME--K 673
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
Q V AT+ + + + +MA L +MK G P +Y + GFCK G
Sbjct: 674 QY---DVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTG 730
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
N ++ Y+ E G +P +L KV + I+H +
Sbjct: 731 NVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLM 777
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 75/173 (43%), Gaps = 16/173 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G + AL+L ++ G YN+++ CK G S N
Sbjct: 482 QQGLILPALQLMNEMAEKGCKPDIWTYNLIINGL-CKMGCLSDAN--------------- 525
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ IT P+ T+ ++ + + A +LV +M S G+ P + +Y L G
Sbjct: 526 HLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGL 585
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
CK +++ E+ M E G P + +++ ++KKV++ ++L +++
Sbjct: 586 CKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKS 638
>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Brachypodium distachyon]
Length = 534
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 7/181 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E+ QMI PN ATF ++ R V E + QM+ G P + +Y
Sbjct: 290 VPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPDIITYNF 349
Query: 231 ALFGFCKLG--NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ C G N D A ++ M G P+ + +LKL V VD +++ R++
Sbjct: 350 LMETHCGKGQSNLDAAMKLLLKMIAKGCTPDCHTFNPMLKLVVVLGNVDAAHKLYERMQE 409
Query: 289 LVRQVSESTFKIIEDWF---DSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW 345
L + + T+ ++ F S+D + D V + G + + G G W
Sbjct: 410 LQCKPNVITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALI--ETFCGRGNW 467
Query: 346 R 346
+
Sbjct: 468 K 468
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+++++M + PN T+ + +L + +M + K M + G+ P + +YG + F
Sbjct: 402 KLYERMQELQCKPNVITYNLLMKLFGKDKSMDMVLRIKKDMDAQGVEPNVNTYGALIETF 461
Query: 236 CKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
C GN +AY M E + P++P +L L A ++ K E++
Sbjct: 462 CGRGNWKRAYATLREMLEVKSLKPKKPVYDMVLVLLRKAGQLRKHEELV 510
>gi|297798436|ref|XP_002867102.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297312938|gb|EFH43361.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 1094
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G V +A Y RS + + +N L+ C ++G
Sbjct: 549 IDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACG--------QSG--------A 592
Query: 171 LKRGFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M T +DP+ T ++ + E A ++ + + +GI Y
Sbjct: 593 VDRAFDVLAEMKAETHPIDPDHITIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVY 652
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
A+ K G+ D A + M E V P+E SAL+ ++ AK +D+ + IL ++
Sbjct: 653 TIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKS 712
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V EA RL+D+ + GI + N ++ G + N + ND
Sbjct: 553 GLVSEAFRLWDEMKEKGIKPTLVTCNTIIK------GYLRAGNLSKAND----------F 596
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
MI++ V P+ T+ ++ V +E+ + AF L+ M+ G+ P L +Y L GF +
Sbjct: 597 LNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSR 656
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
G +A V M + G+ P++ ++L+ V + + + +
Sbjct: 657 HGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRV 701
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ DV AL++ ++ G + YN LL + C + ++ D
Sbjct: 411 RNDDVSGALKMRNEMVERGCVMDVVTYNTLL---NGLCRGKMLDDAD------------- 454
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F++M+ V P+ T T++ + A L + M + P + +Y + GF
Sbjct: 455 ELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGF 514
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK+G +KA E+ M + P S L+
Sbjct: 515 CKVGEMEKAKELWYDMISREIFPSYISFSILI 546
Score = 39.3 bits (90), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG V EA L D G+ YN L+ + C S E R D LG+
Sbjct: 271 RRGLVSEAFGLVDCMAGKGLKPGLFTYNALI---NGLCKEGSYERAKRVLDEMLGVG--- 324
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ PN ATF + + KED A + +M G+ P L S+ + F
Sbjct: 325 ----------LCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVF 374
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G +A M G+VP+ + L+
Sbjct: 375 SRNGELGRALAYFEKMKGVGLVPDTVIYTILI 406
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ +AL L++ + YN L+ CK G +++
Sbjct: 481 KDGNMTKALSLFETMTLRSLKPDVVTYNTLMD-GFCKVGE---------------MEKAK 524
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E++ MI+ ++ P+ +F+ + + AF L +MK GI P L + + G+
Sbjct: 525 ELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGY 584
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GN KA + M GV P+ + L+ V + D+ + +++ +
Sbjct: 585 LRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNM 635
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 84/196 (42%), Gaps = 19/196 (9%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+L H L +K G E ++ + G L YN ++ CK G
Sbjct: 571 ILIHGL---TKAGQARETSSIFHAMKQQGFALDARAYNAVVD-GFCKSGK---------- 616
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
L + +E+ ++M +V P AT+ S+ + + A+ L ++ KS GI +
Sbjct: 617 -----LDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNV 671
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
Y + GF K+G D+AY + M + G+ P ++L+ V A+++++
Sbjct: 672 IVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQS 731
Query: 286 LRTLVRQVSESTFKII 301
++ + + T+ I+
Sbjct: 732 MKEMKCSPNTYTYSIL 747
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 83/199 (41%), Gaps = 16/199 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G+V +A RL+++ G H+ N ++Y + +G +E+
Sbjct: 468 IDGLGKKGNVDDAYRLFENMLDTG-----HNANPVVYTSLIR---NFFMHGRKED----- 514
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
G +IF++M P+ + D E + + +K +G P +RSY
Sbjct: 515 ---GHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSI 571
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K G + + M + G + +A++ + K+DK YE+L ++
Sbjct: 572 LIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKR 631
Query: 291 RQVSESTFKIIEDWFDSVD 309
+ +T+ I D +D
Sbjct: 632 VPPTVATYGSIIDGLAKID 650
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 17/191 (8%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
++ G V AL L D+ + + + YNV + C K G+ +
Sbjct: 228 AREGRVEGALALVDEVKGSCLEPDIVLYNVCID-CFGKAGN---------------VDMA 271
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ F ++ + + P++ ++TS+ + A +L QM++ P +Y + G
Sbjct: 272 WKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMG 331
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
+ G + AY++ + E G +P +++L +KVD+ + ++ + +
Sbjct: 332 YGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDA-EPN 390
Query: 295 ESTFKIIEDWF 305
ST+ II D
Sbjct: 391 SSTYNIIIDML 401
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 72/177 (40%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + EA + ++ G+T + + +N L+ ++ + N++ +
Sbjct: 678 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLM---------DALVKAEEINEALI- 727
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
FQ M K PN T++ + + AF ++M+ G+ P + +Y
Sbjct: 728 ------CFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTT 781
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G K+GN A + +G P+ +AL++ A + + Y + R
Sbjct: 782 MIAGLAKVGNITDACSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETR 838
Score = 38.9 bits (89), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+R E+ +QM + FT++ R + E A LV ++K + P + Y
Sbjct: 199 ERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVC 258
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ F K GN D A++ + G+ P++ ++++ + A ++ + E+ ++ T
Sbjct: 259 IDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMET 315
Score = 38.5 bits (88), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 76/194 (39%), Gaps = 22/194 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG--SESSE-NGDRENDS 167
+D K G+V A + + + +S G+ Y +++V CK G SE+ E G E +
Sbjct: 259 IDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVL-CKAGRLSEAEELFGQMETER 317
Query: 168 NL-----------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
+ + +++ Q+ P+ +F S+ K + A
Sbjct: 318 AVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEAL 377
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
L + MK P +Y + C G ++AY + M +G+ P ++ ++
Sbjct: 378 TLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRL 436
Query: 271 VDAKKVDKVYEILH 284
AKK + YE+
Sbjct: 437 CKAKKFEPAYEMFE 450
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 100/236 (42%), Gaps = 28/236 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDREND--- 166
LD+ K G+ F AL L++D + G S + +N ++ C + E+ E +R +
Sbjct: 471 LDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGF 530
Query: 167 --------------SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
LG ++ F++ ++M + + P+ + S+ + D
Sbjct: 531 EPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREVMD 590
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L+ +M G+ P + +YG + G+C G DKA+ M E G P S ++
Sbjct: 591 LLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLY 650
Query: 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
++D+ +L ++ V+ F + +FD + A+ G N D K+ + +
Sbjct: 651 RLGRIDEANMLLQKM------VNLDVF-LDHGYFDRLHKADDG--NLDSQKIADTL 697
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + +M+ + PN T+ ++ + + A L ++ G+ P + SY +
Sbjct: 763 AFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILID 822
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G+CK GNT +A ++ M + G+ P SAL+ + K +L +R L
Sbjct: 823 GYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQ 882
Query: 294 SESTF-KIIE 302
+ + F K++E
Sbjct: 883 NIAKFVKLVE 892
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS---------ENGDREND 166
K GD+ EA RL ++ ++G+ + + L+ C CK G S E G +D
Sbjct: 400 KVGDLKEARRLVNEMTASGLKPDKITFTTLIDGC-CKDGDMESALEIKRRMVEEGIELDD 458
Query: 167 SNL-----GLKRGFEIFQ--QMITDKVD----PNEATFTSVARLAVAKEDPEMAFDLVKQ 215
GL R + +M+TD + P++ T+T V K D +M F L+K+
Sbjct: 459 VAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKE 518
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
M+S G P + +Y + G CK G A + M GV P + + LL
Sbjct: 519 MQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILL 570
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 84/212 (39%), Gaps = 21/212 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK--------------CGSESSE 159
C K GDV E RL S G+ ++ L+ CK CG
Sbjct: 293 CCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGL-CKEGRLDEGSLLFDEMCGRGLVP 351
Query: 160 NGDRENDSNLGLKRGFEI------FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
NG G +G ++ FQ M+ V P+ T+ ++ D + A LV
Sbjct: 352 NGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLV 411
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+M + G+ P ++ + G CK G+ + A E+ M E G+ ++ +AL+
Sbjct: 412 NEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCRE 471
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+V +L + + + + T+ ++ D F
Sbjct: 472 GRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCF 503
>gi|156083863|ref|XP_001609415.1| pentatricopeptide repeat domain containing protein [Babesia bovis
T2Bo]
gi|154796666|gb|EDO05847.1| pentatricopeptide repeat domain containing protein [Babesia bovis]
Length = 1067
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A+ +YD S G+ + YN ++ C+ R D +K + ++M+
Sbjct: 787 AMSIYDMMVSEGVMRNTVTYNSIIDACA------------RVGD----MKAAAALLEEMM 830
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
++V+P+ TF+++ + + + + +F L+ M GI P Y L G K G
Sbjct: 831 MNQVEPDLITFSTIIKGYCVQCNMDQSFQLLSIMYERGIKPDGILYNSLLEGCVKSGRLW 890
Query: 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++ M G+ P L+ L+K+ + ++DKV++++ RL
Sbjct: 891 LCEKLWEQMRIHGIAPSNFTLTILIKMYGRSGQLDKVFDLVERL 934
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 56/109 (51%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N L+R I+ M+++ V N T+ S+ D + A L+++M + P L +
Sbjct: 781 NRQLQRAMSIYDMMVSEGVMRNTVTYNSIIDACARVGDMKAAAALLEEMMMNQVEPDLIT 840
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
+ + G+C N D+++++ + M E G+ P+ ++LL+ V + ++
Sbjct: 841 FSTIIKGYCVQCNMDQSFQLLSIMYERGIKPDGILYNSLLEGCVKSGRL 889
>gi|218200036|gb|EEC82463.1| hypothetical protein OsI_26904 [Oryza sativa Indica Group]
Length = 346
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
PN ++T + R A + A L++ M+S G+ + +YG + G C DKA E+
Sbjct: 113 PNAVSYTVLMRALCADRRADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 248 DAHMGESGVVPEEPELSALLK 268
M ESG+ P S+LL+
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQ 193
Score = 42.0 bits (97), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
DR D +GL R M + V + T+ ++ R + + A +L+ +M G
Sbjct: 127 ADRRADQAVGLLR------SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 180
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I P + Y L G+CK G + +V M E G+ P+ + L+ K K +
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240
Query: 281 EIL 283
++
Sbjct: 241 GVM 243
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSE-------NGD 162
L+ KR +A++L D+ G YNV+L +C ++ E G
Sbjct: 208 LEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGC 267
Query: 163 REN--DSNLGLKRGF---------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
N N+ LK F ++ ++M PN TF + + E A +
Sbjct: 268 EPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAME 327
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
+++QM +G P SY P L FCK KA E M G P+ + LL
Sbjct: 328 VLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALC 387
Query: 272 DAKKVDKVYEILHRLR 287
+VD E+LH+L+
Sbjct: 388 RNGEVDVAIELLHQLK 403
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 2/180 (1%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ +QM PN ++ + ++ A + V+ M S G P + SY L
Sbjct: 325 AMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLT 384
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C+ G D A E+ + + G P + ++ A K + E+L + + Q
Sbjct: 385 ALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQP 444
Query: 294 SESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQID 353
T+ I D E V + KV++ +R + LG K R ID
Sbjct: 445 DIITYSTIASGLCREDRIEEAVRTF--CKVQDMGIRPTAALYNAILLGLCKRRETHNAID 502
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K E+ +M + + P+ T++++A ++ E A +++ GI P Y
Sbjct: 428 KEALELLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAI 487
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L G CK T A ++ A+M SG +P E + L++
Sbjct: 488 LLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVE 524
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 16/144 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG V A+ + + G T + YN LL+ CK + +
Sbjct: 318 RRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHA-FCK---------------QKKIHKAM 361
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E + M++ P+ ++ ++ + ++A +L+ Q+K G P L SY + G
Sbjct: 362 EFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGL 421
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
K G T +A E+ M G+ P+
Sbjct: 422 TKAGKTKEALELLDEMTSKGLQPD 445
>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
[Vitis vinifera]
gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF M+ ++P+ F+ +A+ V +PE A L+ M G+ P + + + G+
Sbjct: 373 EIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGW 432
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
C G + A V M E G+ P L+ +AK+ K E+L + +
Sbjct: 433 CSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQKAEELLQIMEQKGVAPVK 492
Query: 296 STFKIIEDWFDSVDAA 311
ST +++ D + ++ A
Sbjct: 493 STIQLVADAWHALGLA 508
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 82/214 (38%), Gaps = 20/214 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLY---------VCSCKCGSESSENGDREN 165
S+ G+V EA++++ + G + +N L+ C S E + N
Sbjct: 152 SESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPN 211
Query: 166 DSNLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
D + + + +M + P+ T+ ++AR + A ++
Sbjct: 212 DRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMIL 271
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+M++ + P R+ G + G+CK G A M GV P ++L+K +D
Sbjct: 272 EMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDIT 331
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
D V E L + + TF I + + SV
Sbjct: 332 DTDGVDEALTLMEEFGVKPDVVTFSTIMNAWSSV 365
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 16/170 (9%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
RG V +AL L DD G + Y VLL CK N G ++
Sbjct: 155 RGRVADALSLLDDMLRRGCQPNVVTYTVLLEA-MCK---------------NSGFEQAMA 198
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M PN T+ + + + A DL+ ++ S+G P SY L G C
Sbjct: 199 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLC 258
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D E+ A M E +P E L++ V++ ++L ++
Sbjct: 259 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQM 308
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 18/171 (10%)
Query: 100 RESPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES 157
R+ P V+ + + ++G + EA+ L + +G T + YN L + C SE
Sbjct: 483 RDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSED 542
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+ E+ +++ V P+ TF+S+ + ++ E A + +
Sbjct: 543 A----------------LELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQ 586
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G+ PK Y L G CK D A + A+M +G +P E L++
Sbjct: 587 DIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIE 637
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G V +A + ++ S G Y +L + +R ND+
Sbjct: 329 KQGRVDDAFKFLNNMGSYGCNPDTISYTTVL---------KGLCRAERWNDAK------- 372
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M+ + PNE TF + + K E A L++QM+ G + +Y + GF
Sbjct: 373 ELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGF 432
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK----VYEILHR 285
C G+ D A E+ M P + LL +A+++D V E+LHR
Sbjct: 433 CVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHR 483
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 55/132 (41%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ M+ PN T+T + E A ++ +M++ G P + +Y +
Sbjct: 161 ALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIIN 220
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G C+ G D A ++ + G P+ + LLK +K+ D V E+ +
Sbjct: 221 GMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMP 280
Query: 294 SESTFKIIEDWF 305
+E TF ++ +F
Sbjct: 281 NEVTFDMLIRFF 292
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+ +M+ PN TF + K + A +LV+QM G P L +Y
Sbjct: 470 LDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNT 529
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
G K +++ A E+ + GV P+ S+++ + +V++ ++ H
Sbjct: 530 LFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFH 583
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 23/195 (11%)
Query: 95 KKKARRESPEGVLRHKLDMC--SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K+ R P + +C ++G + +A+ L + + +G T+ YN L+
Sbjct: 376 KEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALV------ 429
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
NG + E+F+ M PN T+T++ E + A +L
Sbjct: 430 -------NGFCVQGH---IDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAEL 476
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSV 271
V +M PP + ++ + FC+ G D+A E+ M E G P + L ++
Sbjct: 477 VAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITK 536
Query: 272 DAKKVDKVYEILHRL 286
D D + E+LH L
Sbjct: 537 DCSSEDAL-ELLHGL 550
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F +M+ PNE TF + R E A +++QM +
Sbjct: 268 ELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSI 327
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G D A++ +MG G P+ + +LK A++ + E+L +
Sbjct: 328 CKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEM 378
>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 827
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 19/216 (8%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDS 167
+ LD + G EAL L +D + +G L+ H YN ++Y +C + E R
Sbjct: 571 YILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAIIYKLCKEGYPERALELLPRMLKR 630
Query: 168 NL------------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA 209
N+ KR +F +M+ + N AT+T + + A
Sbjct: 631 NVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEA 690
Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
+ + K+MK G+ SY + GFC KA+ + M G P + ++
Sbjct: 691 YGIFKEMKERGLCLDQISYTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDG 750
Query: 270 SVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
+ ++D + ++ T+ ++ DW+
Sbjct: 751 FCKSNRIDLATWVFDKMNRDSVIPDVVTYTVLIDWY 786
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
KRG+VFEAL++ ++ +S+GI + Y++L+ + CG GD + +
Sbjct: 403 KRGEVFEALQVLEEMKSSGILPDVYSYSILI---NAFCG-----KGD--------VMKCL 446
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ ++M ++ P+ ++TS+ K + A D+ + + Y + GF
Sbjct: 447 DLMEEMEHSQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSIGASSCKYDSTVYETLIDGF 506
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
C G+ D A ++ M + +VP +L++ D+ E+ + +
Sbjct: 507 CMQGDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAM 557
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/163 (17%), Positives = 68/163 (41%), Gaps = 14/163 (8%)
Query: 125 RLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183
R++++ + G + + + Y +++ + CS + + G+++ I ++
Sbjct: 303 RVFEELKDRGPSPNIYTYTIMMNFYCS-------------DVGCDAGMRQAAVILGKIYR 349
Query: 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK 243
P T+++ + E A L++ + P S+ ++GFCK G +
Sbjct: 350 SGEKPTVVTYSTYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFE 409
Query: 244 AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
A +V M SG++P+ S L+ V K +++ +
Sbjct: 410 ALQVLEEMKSSGILPDVYSYSILINAFCGKGDVMKCLDLMEEM 452
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 34/96 (35%)
Query: 399 QEWLGRHGPFDAVIDGANVGLVN----QHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKG 454
+EWL + + A++DGAN+ L + FS QL
Sbjct: 692 KEWLEANKDYRAIVDGANIALYQPNFAEGGFSLTQL------------------------ 727
Query: 455 RVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDW 490
+ P N+ L++ WR GALYT+P GSNDDW
Sbjct: 728 ------MENPSNRHLIETWRTNGALYTSPSGSNDDW 757
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG + EA +++++ S+G+ S + V+++ C+ G+ L +
Sbjct: 1447 ERGLLREARKIFNNMISDGLLPSAVTFTVIIHA-YCRRGN---------------LYSAY 1490
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
F++M+ + V+PNE T+ + ++A +M G+ +Y + G
Sbjct: 1491 GWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGN 1550
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK+GN + A M ++G+ P+ ALLK
Sbjct: 1551 CKVGNWEDAMRFYFEMHQNGIHPDYLTHKALLK 1583
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 81/206 (39%), Gaps = 21/206 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENGDREND 166
K G++ EAL L+ D R G+ + YN+L+ C+ G E E G N
Sbjct: 1272 KAGNLKEALLLFGDLRRAGLAPTVLTYNILI-DGYCRLGDLEEARILKEEMGEQGCLPNV 1330
Query: 167 SNL-----------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
L E F +M++ + P+ + + + D AF+L +
Sbjct: 1331 CTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREV 1390
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
+ GI +Y + G CK GN A E+ M +G+ P+ + L+ +
Sbjct: 1391 LMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGL 1450
Query: 276 VDKVYEILHRLRTLVRQVSESTFKII 301
+ + +I + + + S TF +I
Sbjct: 1451 LREARKIFNNMISDGLLPSAVTFTVI 1476
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 16/150 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ A L + GI+ YN+L++ CK G+ LK E+
Sbjct: 1379 GDIARAFELREVLMLEGISSDTVTYNILIHGL-CKTGN---------------LKDAKEL 1422
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+M+++ + P+ T+T + + A + M S G+ P ++ + +C+
Sbjct: 1423 QMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCR 1482
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALL 267
GN AY M E GV P E + L+
Sbjct: 1483 RGNLYSAYGWFRKMLEEGVEPNEITYNVLI 1512
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 51/109 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M + P+ T+ S+ + + A L ++ G+ P + +Y + G+C+
Sbjct: 1248 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCR 1307
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
LG+ ++A + MGE G +P + L+K S++ + + E +
Sbjct: 1308 LGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEM 1356
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 113/291 (38%), Gaps = 44/291 (15%)
Query: 25 SLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTT------GLCTLAFSKKST 78
+L ++ S CH R + +H F K I + F D+ T GLC +
Sbjct: 98 TLHILINSFCHLNRGKIGEALHLFDKMIGE----GFRPDVVTYGTLINGLCKVG------ 147
Query: 79 VNESSAPNT-GTMSNKSKKKARRESPEGVLRHK--LDMCSKRGDVFEALRLYDDARSNGI 135
N S+A G+M K+ + V + +D K V EA L+ + + GI
Sbjct: 148 -NTSAAIRLLGSMVQKNCQP-------NVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGI 199
Query: 136 TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS 195
+ YN L++ C K + +M+ K+ P+ +F +
Sbjct: 200 SPDIFTYNSLIHALCNLCE----------------WKHVATLLNEMVDSKIMPDVVSFNT 243
Query: 196 VARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254
V + A D+V K ++ G P + SY + G+CK+ DKA + M
Sbjct: 244 VVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQ 303
Query: 255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
++P+ S L+ +++ + H + + + T++I+ D+
Sbjct: 304 ELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYL 354
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ E++++M+ + + P+ TF+++ + D E L+++M+S G+ P + +Y
Sbjct: 211 REALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEMESLGLKPNIYTYTIC 270
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ + G D+A + M + G P+ + L+ A K+D E+ +++
Sbjct: 271 IRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSH 330
Query: 292 QVSESTFKIIEDWFDSVDAAEIG 314
+ T+ + D F D ++G
Sbjct: 331 KPDRVTYITMLDKFS--DCGDLG 351
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 16/168 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ EA L D R G+ + H YN L+ +R +D+
Sbjct: 381 KAGNIDEAFHLLDVMRKQGVLPNLHTYNTLI---------SGLLRVNRLDDA-------L 424
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F M T V P T+ + A + ++MK GI P + + +L+
Sbjct: 425 DLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSL 484
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
++G +A + + +G+ P+ + ++K A +VD+ E+L
Sbjct: 485 AEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELL 532
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FE+++QMI PN T + V + A DL + S P +YGP L G
Sbjct: 845 FELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDG 904
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K G ++A E+ M + G P + L+ V+ E+ R+
Sbjct: 905 LLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRM 956
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 50/117 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L R E + +M D P+ TFT + + + AF L+ M+ G+ P L +Y
Sbjct: 350 LGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNT 409
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G ++ D A ++ +M GVVP + + + DK E +++
Sbjct: 410 LISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMK 466
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 85/208 (40%), Gaps = 17/208 (8%)
Query: 95 KKKARRESPEGV-LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKC 153
K K R +P V L ++ G + EA +++ +SNG+ YN+++ KC
Sbjct: 464 KMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMM-----KC 518
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
S++ + + E+ M ++ +P+ S+ + A+ +
Sbjct: 519 YSKAGQ-----------VDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMF 567
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
++K + P + +Y + G K G +A E+ A M +G P + +L
Sbjct: 568 CRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKN 627
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKII 301
+VD ++L+++ T+ TF I
Sbjct: 628 DEVDLALKMLYKMTTMNCMPDVLTFNTI 655
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/154 (18%), Positives = 67/154 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F +M P+ T+ ++ D + +M++ G P + ++
Sbjct: 315 LDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTI 374
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK GN D+A+ + M + GV+P + L+ + ++D ++ + + TL
Sbjct: 375 LVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLG 434
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR 324
+ T+ + D++ ++ + ++ K+R
Sbjct: 435 VVPTAYTYILFIDFYGKSGRSDKALETFEKMKIR 468
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 64/154 (41%), Gaps = 26/154 (16%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG----LKR 173
G V +AL ++ + G+ L YN+++ LG ++
Sbjct: 979 GRVDDALHYFEKLKQTGLYLDSIAYNLMI--------------------DGLGRSHRIEE 1018
Query: 174 GFEIFQQMITDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
++ +M + ++P+ T+ S + L VA E A L ++++ G+ P + +Y +
Sbjct: 1019 ALTLYDEMQSRGINPDLFTYNSLILNLGVAGM-VEQAGKLYEELQFIGLEPNVFTYNALI 1077
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266
G+ GN+D AY V M G P + L
Sbjct: 1078 RGYSMSGNSDSAYAVYKRMMVGGCSPNTGTFAQL 1111
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPA 231
R E+ +QM PN T+ +V ++ + A D++++M+ G I P +YG
Sbjct: 506 RALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTV 561
Query: 232 LFGFCKLGNTDKAYEV-DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK+G D+A +V D + + V PE +AL+ D K+D +L+R R +
Sbjct: 562 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA--LLYRDRMVE 619
Query: 291 RQVS 294
R V+
Sbjct: 620 RGVA 623
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK+G V E +L+D+A GI YN L+ + S +G+ + R
Sbjct: 707 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALI--------NSHSTSGN--------IDRA 750
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FEI +M ++ P++ T+ ++ R + A L+ +M GI P L +Y + G
Sbjct: 751 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 810
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ A + M G P +AL++
Sbjct: 811 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 844
Score = 46.2 bits (108), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G+V +AL ++++ G+ + Y L+Y S K + ++
Sbjct: 673 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD---------------- 716
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F + + + P+ + ++ + + AF+++ +M+ I P +Y + G
Sbjct: 717 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 776
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
C LG D+A ++ M E G+ P+
Sbjct: 777 CLLGRVDEARKLIDEMTERGIQPD 800
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 19/181 (10%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+L H L M RG EA L ++ G+ YN+L+ CK G+
Sbjct: 631 LLVHALFM-DGRGT--EAYELVEEMGGKGLAPDVFTYNILIN-GHCKEGN---------- 676
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+K+ EIF+ M V T+T++ K + L + GI P L
Sbjct: 677 -----VKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 731
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
Y + GN D+A+E+ M + + P++ + L++ +VD+ +++
Sbjct: 732 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDE 791
Query: 286 L 286
+
Sbjct: 792 M 792
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 19/203 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNL----------- 169
EAL+ +++ NGI + + Y VL+ Y C E E + L
Sbjct: 313 EALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI 372
Query: 170 --GLKRGFE-----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
KRG + M +KV PN T+ + K+ + A L+ +M +
Sbjct: 373 DGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLS 432
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P L +Y + G CK D A+ + M + G VP++ A + KV++ +++
Sbjct: 433 PNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQV 492
Query: 283 LHRLRTLVRQVSESTFKIIEDWF 305
L+ + +E + + D +
Sbjct: 493 FESLKEKHAEANEFLYTALIDGY 515
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F+ M+ D V+PN +F ++ + +A + FG +Y + G+C
Sbjct: 177 LFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYC 236
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K+ AY+V M + G + E + L+ + K+D+ E+ +++
Sbjct: 237 KIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMK 287
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +++F+ M + NE ++T++ + A +L QMK G P + +Y
Sbjct: 241 LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTV 300
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ FC++G +A + M E+G+ P + L+ K+D+ E+L
Sbjct: 301 LVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEML 353
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D KRG + +A+ + D + N + + YN L+ CG ++ D
Sbjct: 372 IDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELI------CGFCRKKSMD-------- 417
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
R + +M +K+ PN T+ ++ + A+ L M G P R++
Sbjct: 418 --RAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCA 475
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ CK+G ++A++V + E E +AL+ A+K + + R+
Sbjct: 476 FIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRM 531
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F++M+ PN T++ + + E +AF L MK GI P + L C
Sbjct: 728 LFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCC 787
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
KLG ++A + M E + L+ + +K EI L + E
Sbjct: 788 KLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEV 847
Query: 297 TFKIIED 303
+K++ D
Sbjct: 848 VWKVLLD 854
Score = 38.5 bits (88), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 12/163 (7%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL---K 172
++G + EA + + GI L Y+VL+ C G S G + G +
Sbjct: 622 RQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGC-IGQLDSAFGVLIRMFDTGCEPSR 680
Query: 173 RGFEIF-QQMITDKVDPN------EATFTSVARLAVAK-EDPEMAFDLVKQMKSFGIPPK 224
+ + I + +I +K + +T SV + K D E+ L ++M G P
Sbjct: 681 QTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPN 740
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ +Y + G CK+ + A+ + HM ESG+ P E ++LL
Sbjct: 741 VNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLL 783
>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 575
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
++ K G +A +++D+ R G++ + YN L+ G E + N++N
Sbjct: 275 MNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLI-------GGLCREM--KANEAN-- 323
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ QM + ++PN T+ ++ + A L + +KS G+ P L +Y
Sbjct: 324 -----KVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNV 378
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFC+ G+T A ++ M E G+ P + + L+
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 21/217 (9%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP V+ L D C K+G++ +A L+ + G+ ++ Y VL++ +N
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIH--------GLFKN 246
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
G + K+GFE++++M V PN T+ V + AF + +M+ G
Sbjct: 247 GIK--------KQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERG 298
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ + +Y + G C+ ++A +V M + P + L+ K+ K
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKAL 358
Query: 281 EILHRLRTLVRQVSESTFKIIEDWF----DSVDAAEI 313
+ L++ S T+ ++ F D+ AA++
Sbjct: 359 SLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKM 395
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 16/143 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + +AL L D +S G++ S YNVL+ S C R+ D++ K +
Sbjct: 352 GKLGKALSLCRDLKSRGLSPSLVTYNVLV---SGFC---------RKGDTSGAAK----M 395
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M + P++ T+T + ++ E A L M+ G+ P + +Y + GFC
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCI 455
Query: 238 LGNTDKAYEVDAHMGESGVVPEE 260
G ++A + M E + P E
Sbjct: 456 KGQMNEASRLFKSMVEKMLEPNE 478
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 16/195 (8%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C + G++ ++ L + R G + + Y L+ C CK G +++
Sbjct: 173 CCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGC-CKKGE---------------IEK 216
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
++F +M + NE T+T + + F++ ++M+ G+ P L +Y +
Sbjct: 217 AKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMN 276
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G T A++V M E GV + L+ K ++ +++ ++++ V
Sbjct: 277 QLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINP 336
Query: 294 SESTFKIIEDWFDSV 308
+ T+ + D F SV
Sbjct: 337 NLITYNTLIDGFCSV 351
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++ + +A + +D GI S Y +++ + GSE +
Sbjct: 394 IDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPK----------- 442
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+IF +MI ++P+ T+T R + E A ++ QM G+ P L +Y
Sbjct: 443 -----KIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNT 497
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI-----LHR 285
+ G+ LG +A+ M G P E + LL+L V D +I +
Sbjct: 498 LIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKD 557
Query: 286 LRTLVRQVSESTFKIIEDWF 305
L+ L+ ++E + D +
Sbjct: 558 LQVLLEDITERQLPLAADIY 577
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ F + M T+ + PN+ TF+ + +E E A + + G+ Y
Sbjct: 298 LQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G D A E+ M G VP+ S+L+ KK+ + +L +
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417
Query: 291 RQVSESTFKIIED 303
Q S T+ II D
Sbjct: 418 IQASPVTYTIIID 430
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++F+ M ++ PN T+T + E A L +M G+ P + +Y
Sbjct: 228 MEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTA 287
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C G+ A+ + M +G+VP + S L+ +KV++ L L
Sbjct: 288 LIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKG 347
Query: 291 RQVSESTFKIIEDWF---DSVDAAE 312
+V+E + + D +DAA+
Sbjct: 348 VKVNEVVYTSLIDGLCKTGKIDAAD 372
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFE 176
G V EA+ ++ R++ H Y +++ +C E+ + E + GFE
Sbjct: 156 GMVREAMAVFVGMRADSCAPDTHVYATMVHGLC------EAGRTEEAEVLLEEAMSNGFE 209
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
PN + ++ + E A + + M P +R+Y + G C
Sbjct: 210 -----------PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLC 258
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G ++A + + M E+G+ P +AL++ + + + +LH + T ++
Sbjct: 259 KSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDW 318
Query: 297 TFKIIED 303
TF ++ D
Sbjct: 319 TFSVLID 325
>gi|302810233|ref|XP_002986808.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
gi|300145462|gb|EFJ12138.1| hypothetical protein SELMODRAFT_41291 [Selaginella moellendorffii]
Length = 587
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCG-----------SESSENG 161
C + G + + +Y + RS G +S +N L VC CK G S S
Sbjct: 111 CCRSGRLDTCVEIYQEMRSRGFRVSHLAFNSL--VCGLCKAGRTDEAWDVLGKSRPSACA 168
Query: 162 DRENDSNL-------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
D S + R E+ + M +V PN T+TSV + A L++
Sbjct: 169 DAVTLSTVIHALCSSDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQ 228
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
QM++ G P +Y + CK G + A+ + M G P
Sbjct: 229 QMQAAGCSPNTVTYNCLIHSLCKAGKLEDAFALLRSMPSKGCTP 272
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ +D PN T+TS+ ++ A L +MK G+ P + +Y
Sbjct: 339 EKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTT 398
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G+ +AYE+ MG+ G +P +A + + + YE+L++ +
Sbjct: 399 LINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCG 458
Query: 291 RQVSESTFKII 301
+ T+ I+
Sbjct: 459 LEADGVTYTIL 469
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K +FQ +++ + P + T+TS+ + D ++A MK G P +YG
Sbjct: 514 MKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGS 573
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
+ G CK D+A ++ M + G+ P E
Sbjct: 574 LISGLCKKSMVDEACKLYEAMIDRGLSPPE 603
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R F++MI PN FTS+ K + AF+++++M G P + ++
Sbjct: 268 VNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 327
Query: 231 ALFGFCKLGNTDKAYEV 247
+ G CK G T+KA+ +
Sbjct: 328 LIDGLCKRGWTEKAFRL 344
>gi|428671933|gb|EKX72848.1| pentatricopeptide repeat domain containing protein [Babesia equi]
Length = 1104
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 15/147 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
+A+RL++D +S G + N ++Y K ++ + L + ++F M
Sbjct: 786 DAVRLFEDMKSQG----KVKPNTIMYTTLIKGYGQNKQ-----------LDKALKMFNMM 830
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
++ V N T+ S+ D A L++ M + I P L ++ + G+C N
Sbjct: 831 CSENVAANTVTYNSIIDACARVGDMNGAASLLEDMLNNNIEPDLITFSTIIKGYCVQSNM 890
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLK 268
DK++++ + M E G++P+ ++LL+
Sbjct: 891 DKSFQLLSIMYERGIMPDVILYNSLLE 917
>gi|357138495|ref|XP_003570827.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Brachypodium distachyon]
Length = 381
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 26/205 (12%)
Query: 102 SPEGVLRHKLDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
+P L D C +RGD E +L +G+ H YN L+ C + E
Sbjct: 150 APRPALLALADACCRRGDPREIGQQLLPVLADHGVRADAHVYNALM---KAHCAASDPEG 206
Query: 161 ---------GD-------RENDSNLGLKRGFEIFQQ------MITDKVDPNEATFTSVAR 198
GD N GL R + + M + P+ T+TS+
Sbjct: 207 VLGVLRRMKGDGVDPDLVTYNTLVFGLARAGMVAKARTYVDAMAAEGHFPDVITYTSLMN 266
Query: 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
K D A L+++M++ G P R+Y L G CK DKA EV M + +
Sbjct: 267 GMCVKGDALGALKLLEEMEAKGCEPNARTYNTLLMGLCKNRKLDKAVEVYRSMVGAAMKL 326
Query: 259 EEPELSALLKLSVDAKKVDKVYEIL 283
E P ++ ++ A +V YE+
Sbjct: 327 ETPAYASFIRALCRAGRVPDAYEVF 351
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 42/290 (14%)
Query: 83 SAPNTGTMSNKSKKKARRESPEGV------LRHKLDMCSKRGDVFEALRLYDDARSNGIT 136
+A TG ++ AR+ + +GV ++ K GD ALRL+++ +++G T
Sbjct: 272 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 331
Query: 137 LSQHHYNVLL-YVCSC-KCGSESSENGDRENDS-----------------NLGLKRGFEI 177
+ YN L+ +CS K G D E+ + ++ E+
Sbjct: 332 PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV 391
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F QM + N TF ++ + + AF+L+ QM S G+ P +Y L +CK
Sbjct: 392 FDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 451
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL-VRQVSES 296
G+ KA ++ M +G + L+ A + ++L +R +R ++
Sbjct: 452 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 511
Query: 297 TFKIIEDWF------DSV----DAAEIG----VLNWDVSKVREGIVRGGG 332
+++ F D++ + AE+G L + + V G+ RGGG
Sbjct: 512 YNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKI--VFRGLCRGGG 559
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V AL++ D G YN+++ C CK G G I
Sbjct: 210 VGHALKVMDVMVQEGHDPDVFTYNIVVN-CLCKNGQLEEAKG---------------ILN 253
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
QM+ P+ TF ++ E A DL +Q+ G+ P + ++ + CK+G
Sbjct: 254 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 313
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
+ A + M SG P+E + L+ K+ K ++L + + S T+
Sbjct: 314 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 373
Query: 300 IIED 303
I D
Sbjct: 374 TIID 377
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G E+F++M + N T+T++ + D +MA ++ K+M S G+PP + +Y L
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLD 474
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G CK G +KA V ++ S + P + +++ A KV+ +++ L
Sbjct: 475 GLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 90/209 (43%), Gaps = 21/209 (10%)
Query: 105 GVLRHK--LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
GVL + +D K + +AL L+ + + GI + Y+ L+ SC C N
Sbjct: 255 GVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLI---SCLC------NYG 305
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
R +D++ + MI K++P+ TF+++ V + A L +M I
Sbjct: 306 RWSDAS-------RLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P + +Y + GFC D+A ++ M P+ S L+K AK+VD+ E+
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMEL 418
Query: 283 LHRL--RTLVRQVSESTFKIIEDWFDSVD 309
+ R LV T +I+ F + D
Sbjct: 419 FREMSQRGLVGNTVTYT-TLIQGLFQAGD 446
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + QM PN TF ++ A L+ +M + G P L +YG
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGV 226
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G CK G+TD A+ + M + + P
Sbjct: 227 VVNGLCKRGDTDLAFILLNKMEQGKLEP 254
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 79/200 (39%), Gaps = 31/200 (15%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD A ++ + S+G+ + YN LL CK G L++ +
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL-CKNGK---------------LEKAMVV 488
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ + K++P T+ + E +DL + G+ P + +Y + GFC+
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G+ ++A + M E G +P + L++ RLR R+ S
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLIR---------------ARLRDGDREASAEL 593
Query: 298 FKIIEDWFDSVDAAEIGVLN 317
K + + DA+ IG++
Sbjct: 594 IKEMRSCGFAGDASTIGLVT 613
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 10/191 (5%)
Query: 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP-EM 208
S K + E R S L L +F +M+ + P+ F+ + A+AK + ++
Sbjct: 41 SGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLS-AIAKMNKFDV 99
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L +QM++ G+P +Y + FC+ A V M + G P LS+LL
Sbjct: 100 VISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLN 159
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFK-IIEDWFDSVDAAE-IGVLNWDVSK---- 322
+K++ + ++ ++ Q + TF +I F A+E + +++ V+K
Sbjct: 160 GYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQP 219
Query: 323 --VREGIVRGG 331
V G+V G
Sbjct: 220 DLVTYGVVVNG 230
>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 624
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 51/112 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +MI PN TF ++ K E A +L+KQM G P L SY + G
Sbjct: 427 ELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGL 486
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G T++A E+ M G+ P S++ ++DKV ++ ++
Sbjct: 487 GKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQMFDNIQ 538
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 28/201 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRG 174
+ G ALR+ + + G TL + N+++ +C C E G
Sbjct: 163 RSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDE-----------------G 205
Query: 175 FEIFQQMITDKVDPNEATFTSVAR-LAVAK---EDPEMAFDLVK------QMKSFGIPPK 224
E+ +++ + + ++ +V + L AK + E+ ++VK QM G P
Sbjct: 206 LEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPD 265
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+R Y + G CK G+ + A E+ + M G+ P + +LK A + +K E+L
Sbjct: 266 IRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLT 325
Query: 285 RLRTLVRQVSESTFKIIEDWF 305
+ + + TF I+ D+F
Sbjct: 326 EMYQKNCPLDDVTFNILVDFF 346
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS---- 227
+ E+ MI + PN T++S+A A+A+E D V QM +RS
Sbjct: 493 EEALELLNVMINKGITPNVITYSSMA-FALAREG---RIDKVIQMFDNIQDATIRSDAVL 548
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
Y + CK TD A + A+M +G +P E +AL+K
Sbjct: 549 YNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIK 589
>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
Length = 651
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++ GD A ++++D S G+ YN+L++ CK G D LG
Sbjct: 332 MDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAF-CKAG---------RMDKALG 381
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + +++ P T+TS+ V + + A ++ ++K+ G+ P + SY
Sbjct: 382 ------VLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNS 435
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
L G K + A + M +GVVP E +AL + V+K + + R++
Sbjct: 436 LLSGLAKARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMK 492
Score = 48.1 bits (113), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + +I ++M V PN+ + + D AF + + M S G+ P + Y
Sbjct: 306 MAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNI 365
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ FCK G DKA V ++ + ++P +++L V + K E+ R++T
Sbjct: 366 LVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKT 423
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K G++ +AL ++D ++ G+ YN LL S L
Sbjct: 402 LDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLL--------------------SGLA 441
Query: 171 LKRGFE----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
R E + +M+ + V P+E +T++ D E AF + ++MK + +
Sbjct: 442 KARQMENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIV 501
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGV 256
+YG L C G A EV + ++G+
Sbjct: 502 AYGALLKACCNSGAMHGAAEVFQQITDAGL 531
>gi|224034665|gb|ACN36408.1| unknown [Zea mays]
Length = 168
Score = 52.4 bits (124), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 44/96 (45%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ T+TS+ K D A L+++M+ G P R+Y L G CK DKA EV
Sbjct: 43 PDVVTYTSLMNGMCVKGDALGALKLLEEMQGKGCQPNERTYSTLLMGLCKNKKLDKAVEV 102
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
M +G E P ++ ++ + V YE+
Sbjct: 103 YKSMAAAGTKLESPAYASFVRALCRSGSVADAYEVF 138
>gi|384253088|gb|EIE26563.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
Length = 908
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+ A + + + G++ ++ Y LL+ C+ + G+ K +
Sbjct: 349 GNADAAFERFREMQGMGLSTNKSTYGSLLHCCA-QVGNH---------------KSAARV 392
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPE---MAFDLVKQMKSFGIPPKLRSYGPALFG 234
Q M + P +TS+ V P+ AF + ++M+ G+ P +YG L
Sbjct: 393 MQMMRYAGIQPTVEAYTSLMDACVKTGTPDSLSQAFQVFEEMQQEGVEPTAVTYGCLLVA 452
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
+LG+ ++A+++ E G+VP + + L+ + +VD+ E++ L R +
Sbjct: 453 CEQLGDVERAFQLYKQACERGIVPTDECHNILINVCAATGRVDEALELVKELARSHRAMQ 512
Query: 295 ESTFKII 301
++ +
Sbjct: 513 AASLNSV 519
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 79/195 (40%), Gaps = 17/195 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GDV +A L + S G + +YN +L C E + D
Sbjct: 240 IDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVL---KGFCSIERWVDAD-------- 288
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
EI +M+ + PNEAT + K + +++M G + +Y
Sbjct: 289 -----EILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNA 343
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C+ GN D A E+ ++M G P+ + +LK A + + E++ ++
Sbjct: 344 VISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQND 403
Query: 291 RQVSESTFK-IIEDW 304
R STF II W
Sbjct: 404 RLPDNSTFNTIISFW 418
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 65/171 (38%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG V +AL + D G YN+LL +CK G ++
Sbjct: 175 ERGRVADALVVLDGMLCRGCAPDVVTYNILLQA-ACK---------------GRGYRQAL 218
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ M + +PN T+ + + D + A +L+ + S G P +Y L GF
Sbjct: 219 ELIDFMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGF 278
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
C + A E+ M P E L+ ++ + KV L ++
Sbjct: 279 CSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKM 329
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 87/227 (38%), Gaps = 54/227 (23%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSE------NGDREN 165
MC ++G+V AL L + +S G YN +L +CS ++ E DR
Sbjct: 348 MC-EQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLP 406
Query: 166 DSNL-----------GLK-RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
D++ GL + FE+F+QM +PN T++++ E A +L+
Sbjct: 407 DNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELL 466
Query: 214 KQM--KSF--------------------------------GIPPKLRSYGPALFGFCKLG 239
+M K F GI P+ Y L G C+ G
Sbjct: 467 NEMANKGFNTDKMYRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNG 526
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
TD A +V A M G +P+E L++ + E+L RL
Sbjct: 527 KTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRL 573
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 34/176 (19%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL- 169
+D K +V EA L+ + S G+ YN L++ C CK GD E NL
Sbjct: 725 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGC-CK-------EGDMEKAMNLF 776
Query: 170 --GLKRGF-----------------------EIFQQMITDKVDPNEATFTSVARLAVAKE 204
L++GF ++FQ+MI ++ P+ T+T+V
Sbjct: 777 REMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAG 836
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
E A L K+M+ + +Y ++G+ KLG + + + + M GV P+E
Sbjct: 837 KMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDE 892
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 16/173 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GD+ E LR+ D S GI ++ YNVL++ CK G
Sbjct: 340 IDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGL-CKFGK--------------- 383
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ EI + M+T PN TF + + + A +L+ +M+ + P SYG
Sbjct: 384 MEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGA 443
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G C + A ++ M SG+ P S L+ ++++ +L
Sbjct: 444 MINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLL 496
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G + EA + +D+ +G+ + Y VL+ NG + + L
Sbjct: 554 SKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLI-------------NGHFKAGN---LMEA 597
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
IF+++ V P+ T ++ + + A + ++K G+ P + +Y + G
Sbjct: 598 LSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 657
Query: 235 FCKLGNTDKAYEVDAHMGESGVVP 258
FCK G +KA+E+ M G+ P
Sbjct: 658 FCKQGEVEKAFELHDEMCLKGIAP 681
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G+V +A L+D+ GI + YN L+ CK G ++R
Sbjct: 660 KQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGL-CKSGD---------------IQRAR 703
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F M ++P+ T++++ E+ AF L +M S G+ P Y + G
Sbjct: 704 KLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGC 763
Query: 236 CKLGNTDKAYEVDAHMGESG 255
CK G+ +KA + M + G
Sbjct: 764 CKEGDMEKAMNLFREMLQKG 783
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 56/116 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++F ++ + P+ T++S+ + + E AF+L +M GI P + Y
Sbjct: 629 VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNA 688
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK G+ +A ++ M E G+ P+ S ++ ++ V + + + H +
Sbjct: 689 LVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEM 744
Score = 42.0 bits (97), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V EAL+++ + + G+ Y+ L+ S + G+ E + F
Sbjct: 625 KNGRVQEALKVFSELKEKGLVPDVFTYSSLI--------SGFCKQGEVE--------KAF 668
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +M + PN + ++ D + A L M G+ P +Y + G+
Sbjct: 669 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 728
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK N +A+ + M GV P +AL+
Sbjct: 729 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 760
Score = 40.4 bits (93), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
F +F++M+ V P+E T+ V +++ AF L ++ G+ K + +
Sbjct: 877 FALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITA 936
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
CK + +A ++ MGE G+ P + L++ +A K+D+ + +++L
Sbjct: 937 LCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEATRVFEGVKSL 991
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 75/188 (39%), Gaps = 21/188 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---------ESSENGDREN 165
+ G + EA RL D +G+ YN ++ C K G E G + +
Sbjct: 484 ASEGRIEEARRLLDGMSCSGVAPDIFCYNAII-SCLSKAGKMEEASTYLLEIQGRGLKPD 542
Query: 166 DSNLG-----------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
G + + F +M+ + PN +T + + A + +
Sbjct: 543 AVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFR 602
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
++ + G+ P +++ + G K G +A +V + + E G+VP+ S+L+
Sbjct: 603 RLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQG 662
Query: 275 KVDKVYEI 282
+V+K +E+
Sbjct: 663 EVEKAFEL 670
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+++ M+ K+ + T+T + D A ++ +M G+ P Y + G
Sbjct: 214 KVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGM 273
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
C++G+ D+A E+ MGE G+VP
Sbjct: 274 CQVGDIDEAVELKRSMGEKGLVP 296
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 24/240 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G + EALRL + + G + N+ + S C S E R
Sbjct: 370 MDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNI---IASGFCRSNRREEAKR------- 419
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ M V PN +F+ + + +++ A L K M+ G P + +Y
Sbjct: 420 ------LLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNA 473
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ +CK G ++AY++ M E G++P+ ++L+ + VD+ E+ + + L
Sbjct: 474 FIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLG 533
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGW-------HGQGWLGSG 343
+ T+ +I A+ +D +EGIV G + H G L SG
Sbjct: 534 LNRNVVTYTVIISGLSKDGRADEAFKLYDEMN-KEGIVPDDGIYSSLIASLHKVGPLVSG 592
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 16/195 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G+V A L D+ G S YN LL NG E G
Sbjct: 195 VDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLL-------------NGYIEIKDVGG 241
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ EI M + VD N T+T + E A L +M GI P + Y
Sbjct: 242 VN---EILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTS 298
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK GN +A+ + M E +VP AL+ + A ++ +++ +++
Sbjct: 299 IINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKG 358
Query: 291 RQVSESTFKIIEDWF 305
V+ F + D +
Sbjct: 359 VDVNRVIFNTLMDGY 373
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S+ + EA +L+D+ GI + Y ++ +CK G+ +KR
Sbjct: 269 SRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIIN-WNCKFGN---------------MKRA 312
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
F +F +M ++ PN T+ ++ A + + A +V M+S G+ + + G
Sbjct: 313 FVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDG 372
Query: 235 FCKLGNTDKAYEVDAHMGESG 255
+CK G D+A + M + G
Sbjct: 373 YCKKGMIDEALRLQNIMQQKG 393
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 61/131 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + ++M P+ T+TS+ ++D + + L+ +M+ PP + +Y
Sbjct: 1606 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 1665
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ K G T +A + + E GV P+ ++L+ + A +++ Y ++ +RT
Sbjct: 1666 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 1725
Query: 291 RQVSESTFKII 301
+ +TF +
Sbjct: 1726 IAPNVTTFNTL 1736
Score = 48.9 bits (115), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 18/205 (8%)
Query: 99 RRESPEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156
+R P V+ + + M K G EAL +D + +G+ YN L+Y+ + G
Sbjct: 1653 KRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILG-RAGR- 1710
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
L+ + + ++M T + PN TF ++ A E A L+ +M
Sbjct: 1711 --------------LEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 1756
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
+ P +++Y P L CK + HM + P+ + L+ KV
Sbjct: 1757 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 1816
Query: 277 DKVYEILHRLRTLVRQVSESTFKII 301
+ L + + + TF ++
Sbjct: 1817 AQSCLFLEEMVSKGFAPKQETFDLV 1841
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 61/131 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + ++M P+ T+TS+ ++D + + L+ +M+ PP + +Y
Sbjct: 1565 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 1624
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ K G T +A + + E GV P+ ++L+ + A +++ Y ++ +RT
Sbjct: 1625 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 1684
Query: 291 RQVSESTFKII 301
+ +TF +
Sbjct: 1685 IAPNVTTFNTL 1695
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 79/205 (38%), Gaps = 18/205 (8%)
Query: 99 RRESPEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156
+R P V+ + + M K G EAL +D + +G+ YN L+Y+ + G
Sbjct: 1612 KRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILG-RAGR- 1669
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
L+ + + ++M T + PN TF ++ A E A L+ +M
Sbjct: 1670 --------------LEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 1715
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
+ P +++Y P L CK + HM + P+ + L+ KV
Sbjct: 1716 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPDFSTYTLLVSWLCRNGKV 1775
Query: 277 DKVYEILHRLRTLVRQVSESTFKII 301
+ L + + + TF ++
Sbjct: 1776 AQSCLFLEEMVSKGFAPKQETFDLV 1800
>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
Length = 1302
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ +D PN T+TS+ ++ A L +MK G+ P + +Y
Sbjct: 940 EKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTT 999
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G+ +AYE+ MG+ G +P +A + + + YE+L++ +
Sbjct: 1000 LINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCG 1059
Query: 291 RQVSESTFKII 301
+ T+ I+
Sbjct: 1060 LEADGVTYTIL 1070
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K +FQ +++ + P + T+TS+ + D ++A MK G P +YG
Sbjct: 1115 MKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGS 1174
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
+ G CK D+A ++ M + G+ P E
Sbjct: 1175 LISGLCKKSMVDEACKLYEAMIDRGLSPPE 1204
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R F++MI PN FTS+ K + AF+++++M G P + ++
Sbjct: 869 VNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 928
Query: 231 ALFGFCKLGNTDKAYEV 247
+ G CK G T+KA+ +
Sbjct: 929 LIDGLCKRGWTEKAFRL 945
>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
1270; Flags: Precursor
gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1440
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/196 (17%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNL 169
LD ++ G++FE ++Y ++ G + Y +++ +C K ++ ++N
Sbjct: 864 LDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANF 923
Query: 170 GL------------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ K+ +++Q++ ++P+E T+ ++ + PE +
Sbjct: 924 KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L++QM++ G+ PKL +Y + F K ++A ++ + G+ + ++K+S
Sbjct: 984 LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043
Query: 272 DAKKVDKVYEILHRLR 287
D+ K ++L ++
Sbjct: 1044 DSGSDSKAEKLLQMMK 1059
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A+ L D R++G+ YN LL CS DSN L ++F+ M
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACS--------------RDSN--LDGAVKVFEDME 324
Query: 183 TDKVDPNEATFTSV----ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+ P+ T+ ++ R +A E + +L ++K F P +Y L+ F +
Sbjct: 325 AHRCQPDLWTYNAMISVYGRCGLAAEAERLFMEL--ELKGFF--PDAVTYNSLLYAFARE 380
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
NT+K EV M + G +E + ++ + ++D ++ ++ L
Sbjct: 381 RNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 78/185 (42%), Gaps = 17/185 (9%)
Query: 103 PEGVLRHKLDMC-SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+ V+ + L C K+G V EAL L +D GI YN+++ V S CG
Sbjct: 150 PDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLS-SCGR------ 202
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
++ + F M K P+ T+ ++ + A DL +M++
Sbjct: 203 ---------YEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKC 253
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P L ++G + K G + A E A + + G VP +AL+ + +VDK YE
Sbjct: 254 MPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSGQVDKGYE 313
Query: 282 ILHRL 286
+ +
Sbjct: 314 LFQDM 318
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ +G+E+FQ MI P+ T+T + + MA +L+++M G P L +Y
Sbjct: 308 VDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNV 367
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
+ G + AY + M G P+ SAL LS K V
Sbjct: 368 LIRSLSMAGQVEDAYTLFKEMIAKGFNPDMQTYSALPNLSTPNKSV 413
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 171 LKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK ++F +MI + PN T+ S+ + A +L+++M G P + +Y
Sbjct: 140 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 199
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GFCKL D AY++ M G+ P ++L+ ++ IL +R
Sbjct: 200 TLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRK 259
Query: 290 VRQVSESTFKIIEDWFDSVDAAE 312
+ T+ I D + V+ E
Sbjct: 260 SCSPTVYTYNTILDGYCRVNQLE 282
>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
Length = 1429
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/196 (17%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNL 169
LD ++ G++FE ++Y ++ G + Y +++ +C K ++ ++N
Sbjct: 864 LDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANF 923
Query: 170 GL------------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ K+ +++Q++ ++P+E T+ ++ + PE +
Sbjct: 924 KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L++QM++ G+ PKL +Y + F K ++A ++ + G+ + ++K+S
Sbjct: 984 LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043
Query: 272 DAKKVDKVYEILHRLR 287
D+ K ++L ++
Sbjct: 1044 DSGSDSKAEKLLQMMK 1059
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A+ L D R++G+ YN LL CS DSN L ++F+ M
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACS--------------RDSN--LDGAVKVFEDME 324
Query: 183 TDKVDPNEATFTSV----ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+ P+ T+ ++ R +A E + +L ++K F P +Y L+ F +
Sbjct: 325 AHRCQPDLWTYNAMISVYGRCGLAAEAERLFMEL--ELKGFF--PDAVTYNSLLYAFARE 380
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
NT+K EV M + G +E + ++ + ++D ++ ++ L
Sbjct: 381 RNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431
>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 703
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K V EA L+ + ++ GI ++ +N+L+Y S K E E
Sbjct: 373 MDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKMQPEIVE----------- 421
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSV-ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
++ +M + PN ++T + + K +MA D +MK GI P SY
Sbjct: 422 -----KLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSYT 476
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL---KLSVDAKKVDKVYEILHRL 286
+ + G +KAY +M G+ P +ALL + + D + + K+++++ R
Sbjct: 477 ALIHAYSVSGWHEKAYAAFENMQREGIKPSIETYTALLDAFRRAGDTQTLMKIWKLMRRE 536
Query: 287 RTLVRQVSESTFKIIEDWF 305
+ + + TF + D F
Sbjct: 537 KV---EGTRVTFNTLVDGF 552
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 17/186 (9%)
Query: 103 PEGVLRHKLDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+ + L C +RG ++E A +++D +S G + YN LL V
Sbjct: 102 PDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYG----------- 150
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+ +K E+ ++M + P+ T+ S+ E A +L QM GI
Sbjct: 151 -----KSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGI 205
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
+ +Y L GF + G + A V M +G P +AL+K+ + K ++ +
Sbjct: 206 KLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMK 265
Query: 282 ILHRLR 287
+ ++
Sbjct: 266 VFEEIK 271
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EI M P+ AT+ S+ + E+ E + +++K++ + GI P + SY +F +
Sbjct: 475 EILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDIISYNTVIFAY 534
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
C+ G +A + + M ESG++P+
Sbjct: 535 CRNGRMKEASHIFSEMRESGLIPD 558
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 70/163 (42%), Gaps = 16/163 (9%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
L++ ++ GI ++ YN L + C+ GS E +F+ M +
Sbjct: 91 LFEGMKNAGILPDEYTYNTL--ITCCRRGSLYEEAA--------------AVFEDMKSMG 134
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
P++ T+ ++ + + A +++++M+ G P + +Y + + + G ++A
Sbjct: 135 FVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAM 194
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
E+ M E G+ + +A+L V K + + +RT
Sbjct: 195 ELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRT 237
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168
H L M + GD A + + R G+ +N+L+ C+CG
Sbjct: 364 HALFMEGRMGD---ADNMIKEMREKGMMPDAVTHNILIN-GYCRCGDA------------ 407
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
KR F + +M+ + P T+TS+ + + + A L +++ G+ P + +
Sbjct: 408 ---KRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVF 464
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G C GN D+A+++ M V+P+E + L++ KV++ ++L ++
Sbjct: 465 NALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMK 523
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%)
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
+N + R F++ ++M KV P+E T+ ++ + + E A L+ +MK GI P
Sbjct: 473 ANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHI 532
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
SY + G+ K G+ A+ V M +G P +AL++ ++ + E+L +
Sbjct: 533 SYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEM 592
Query: 287 RTLVRQVSESTFKIIEDWFDSVDAAE 312
+ +ST+ I + ++VD E
Sbjct: 593 VSKGITPDDSTYLSIIEAMETVDDLE 618
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 16/155 (10%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
LY + I S + +N+++ V CK G LK+ E M T
Sbjct: 203 LYAEMFRMNIRSSLYTFNIMINVL-CKEGK---------------LKKAKEFIGHMETLG 246
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
V PN T+ ++ + + A + + MK G+ P +Y + G CK G ++A
Sbjct: 247 VKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEAS 306
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ M E G+VP +AL+ + +DK Y
Sbjct: 307 GLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAY 341
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD A L D+ GI + Y L+YV N +E D+ +
Sbjct: 405 GDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLG-------KRNRMKEADA---------L 448
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F ++ + + P+ F ++ A + + AF L+K+M + + P +Y + G+C+
Sbjct: 449 FSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCR 508
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G ++A ++ M G+ P+ + L+
Sbjct: 509 EGKVEEARQLLDEMKRRGIKPDHISYNTLI 538
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 42/290 (14%)
Query: 83 SAPNTGTMSNKSKKKARRESPEGV------LRHKLDMCSKRGDVFEALRLYDDARSNGIT 136
+A TG ++ AR+ + +GV ++ K GD ALRL+++ +++G T
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423
Query: 137 LSQHHYNVLL-YVCSC-KCGSESSENGDRENDS-----------------NLGLKRGFEI 177
+ YN L+ +CS K G D E+ + ++ E+
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV 483
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F QM + N TF ++ + + AF+L+ QM S G+ P +Y L +CK
Sbjct: 484 FDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 543
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL-VRQVSES 296
G+ KA ++ M +G + L+ A + ++L +R +R ++
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603
Query: 297 TFKIIEDWF------DSV----DAAEIG----VLNWDVSKVREGIVRGGG 332
+++ F D++ + AE+G L + + V G+ RGGG
Sbjct: 604 YNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKI--VFRGLCRGGG 651
Score = 46.6 bits (109), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V AL++ D G YN+++ C CK G G I
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVN-CLCKNGQLEEAKG---------------ILN 345
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
QM+ P+ TF ++ E A DL +Q+ G+ P + ++ + CK+G
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
+ A + M SG P+E + L+ K+ K ++L + + S T+
Sbjct: 406 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465
Query: 300 IIED 303
I D
Sbjct: 466 TIID 469
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 87/184 (47%), Gaps = 21/184 (11%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
A ++DD G++L+ +NVL+ Y K L+ + ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGK------------------LEDALGMLER 229
Query: 181 MITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
M+++ KV+P+ T+ ++ + K +L+ MK G+ P +Y ++G+CKLG
Sbjct: 230 MVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLG 289
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
+ +A+++ M ++ V+P+ + L+ +A + + E++ +++L Q T+
Sbjct: 290 SLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYN 349
Query: 300 IIED 303
+ D
Sbjct: 350 TLID 353
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 102 SPEGVLRHKLDMCS-KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP+ V H L K GD+ AL + + GI ++ N +L CK +
Sbjct: 413 SPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDAL-CK----ERKL 467
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+ N N KRGF + +E T+ ++ +E E A ++ +MK
Sbjct: 468 DEAHNLLNSAHKRGFIV-----------DEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I P + ++ + G C G T+ A E + ESG++P++ ++++ +V+K +
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAF 576
Query: 281 E 281
E
Sbjct: 577 E 577
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 91/238 (38%), Gaps = 27/238 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK-RGFE 176
G + E L L D +S + YN L+ C LGL +
Sbjct: 324 GSMREGLELMDAMKSLKLQPDVVTYNTLIDGCF-----------------ELGLSLEARK 366
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGPALFGF 235
+ +QM D V N+ T + +E E VK++ G P + +Y + +
Sbjct: 367 LMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAY 426
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
K+G+ A E+ MG+ G+ L+ +L +K+D+ + +L+ V E
Sbjct: 427 LKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDE 486
Query: 296 STFKIIEDWFDSVDAAEIGVLNWD-VSKVRE-------GIVRGGGGWHGQGWLGSGKW 345
T+ + F + E + WD + KV+ + GG HG+ L K+
Sbjct: 487 VTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKF 544
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L SK+G + + L D + NG+ ++ YN L+Y CK GS
Sbjct: 247 LKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVY-GYCKLGS--------------- 290
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK F+I + M V P+ T+ + +L+ MKS + P + +Y
Sbjct: 291 LKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNT 350
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGV 256
+ G +LG + +A ++ M GV
Sbjct: 351 LIDGCFELGLSLEARKLMEQMENDGV 376
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 42/290 (14%)
Query: 83 SAPNTGTMSNKSKKKARRESPEGV------LRHKLDMCSKRGDVFEALRLYDDARSNGIT 136
+A TG ++ AR+ + +GV ++ K GD ALRL+++ +++G T
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423
Query: 137 LSQHHYNVLL-YVCSC-KCGSESSENGDRENDS-----------------NLGLKRGFEI 177
+ YN L+ +CS K G D E+ + ++ E+
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV 483
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F QM + N TF ++ + + AF+L+ QM S G+ P +Y L +CK
Sbjct: 484 FDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCK 543
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL-VRQVSES 296
G+ KA ++ M +G + L+ A + ++L +R +R ++
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603
Query: 297 TFKIIEDWF------DSV----DAAEIG----VLNWDVSKVREGIVRGGG 332
+++ F D++ + AE+G L + + V G+ RGGG
Sbjct: 604 YNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKI--VFRGLCRGGG 651
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V AL++ D G YN+++ C CK G G I
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVN-CLCKNGQLEEAKG---------------ILN 345
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
QM+ P+ TF ++ E A DL +Q+ G+ P + ++ + CK+G
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
+ A + M SG P+E + L+ K+ K ++L + + S T+
Sbjct: 406 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465
Query: 300 IIED 303
I D
Sbjct: 466 TIID 469
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLG------ 170
G V +A +++ + R GI YN+L+ +C K E+ + + N L
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336
Query: 171 --LKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
L GF +F Q+ + + P T+ ++ E+ A DLVK+M+
Sbjct: 337 NILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
I P +Y + F +L T+KA E+ + M +SG+VP+ S L+
Sbjct: 397 RCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLI 445
Score = 46.6 bits (109), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 52/115 (45%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+GF + + + PN +T++ + +A +L +M G+ P +Y +
Sbjct: 176 KGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLM 235
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
GF K G + +++ +M SG+VP + L+ + VDK +++ +R
Sbjct: 236 NGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMR 290
Score = 45.4 bits (106), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 19/189 (10%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP V+ L D C K G+V A L+ G+ + H Y+VL+ N
Sbjct: 190 SPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLM-------------N 236
Query: 161 GDRENDSNLGLKR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
G + GL+R GF++++ M + PN + + + AF + +M+
Sbjct: 237 GFFKQ----GLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREK 292
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
GI + +Y + G C+ +A ++ + + G+ P + L+ D K+D
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTA 352
Query: 280 YEILHRLRT 288
+ ++L++
Sbjct: 353 VRLFNQLKS 361
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 81/202 (40%), Gaps = 16/202 (7%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C + G + RL G++ + Y L+ C CK G N+ L +
Sbjct: 168 CCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGC-CKYG-------------NVMLAK 213
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F +M + PN T++ + + F + + MK GI P +Y +
Sbjct: 214 --NLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLIS 271
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
+C G DKA++V A M E G+ + L+ KK + +++H++ +
Sbjct: 272 EYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSP 331
Query: 294 SESTFKIIEDWFDSVDAAEIGV 315
+ T+ I+ + F V + V
Sbjct: 332 NIVTYNILINGFCDVGKMDTAV 353
>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 21/210 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS----ENGDREN--DSNL 169
K G + +A++++++ S GI+ + YN L+ + C+ G +S +N R ++N+
Sbjct: 228 KSGKLEKAVQVFEEMESVGISPNDTSYNTLI-MGYCRKGLLNSAVKLKNSMRAKGVEANV 286
Query: 170 ----GLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
L GF ++F +M V PN T+ ++ + EM L ++
Sbjct: 287 VTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEE 346
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M G+ + +Y + G CK G T KA + + + +VP SAL+
Sbjct: 347 MSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNN 406
Query: 276 VDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
D+ +++ + + +E TF ++ F
Sbjct: 407 SDRAFQLYKSMVRIGCHPNEQTFNMLVSAF 436
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 16/152 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S+ G+ RLY++ NG+ YN L+ + CK G K+
Sbjct: 332 SQMGNSEMGRRLYEEMSRNGVKADILTYNALI-LGLCKEGKT---------------KKA 375
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +++ + + PN +TF+++ + + + AF L K M G P +++ +
Sbjct: 376 AYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSA 435
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266
FCK + + A+ V M E P LS +
Sbjct: 436 FCKNEDFEGAFLVLMEMFERCFTPGSDVLSEI 467
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/141 (19%), Positives = 59/141 (41%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+++M ++ PN T V R E A + ++M+S GI P SY +
Sbjct: 200 ALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIM 259
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G+C+ G + A ++ M GV ++L+ K+ + ++ ++ L
Sbjct: 260 GYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAP 319
Query: 294 SESTFKIIEDWFDSVDAAEIG 314
+ T+ + + + +E+G
Sbjct: 320 NTITYNTLINGHSQMGNSEMG 340
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M+ PN TF ++ E +++ QM G P +R Y + G
Sbjct: 285 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 344
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ + A+E+ M G+ P + LLK A++ ++ E+L + + +
Sbjct: 345 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 404
Query: 296 STFKIIEDWF 305
TF I+ D+F
Sbjct: 405 VTFNILVDFF 414
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ QMI N TF ++ K E A +L+KQM G P L SY + G
Sbjct: 495 DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 554
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G TD+A E+ M G+ P S++ +++KV ++ ++
Sbjct: 555 GKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQ 606
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 45/113 (39%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ M+ + PN ++S+A + + ++ I Y +
Sbjct: 563 ALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS 622
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G T++A E A+M SG VP E + L++ V + E+L L
Sbjct: 623 SLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 675
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA R++ + + GI + + Y++++ C+ G + R
Sbjct: 227 RAGNISEAERVFGEMKMAGIQPNVYTYSIVIDAL-CRSGQ---------------ITRAH 270
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +MI DPN TF ++ R+ V E + QMK G PP +Y +
Sbjct: 271 DVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESH 330
Query: 236 CKLGNTDKAYEV 247
C+ N ++A ++
Sbjct: 331 CRDDNLEEAVKI 342
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 81/190 (42%), Gaps = 22/190 (11%)
Query: 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
SPE + +D+ K G EA+ ++ G + ++V++ S K
Sbjct: 145 SPEPYME-MIDLAGKAGLAAEAVHAFNRMEDYGCKPDKIAFSVVISSLSKK--------- 194
Query: 162 DRENDSNLGLKRGFEI--FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219
+R E F + D+ +P+ +TS+ + A + +MK
Sbjct: 195 ----------RRAIEAQSFFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMA 244
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
GI P + +Y + C+ G +A++V + M + G P + L+++ V A + +KV
Sbjct: 245 GIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKV 304
Query: 280 YEILHRLRTL 289
++ ++++ L
Sbjct: 305 LQVYNQMKRL 314
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S LG + +F +M K PN T+ + R+ K+ +M L K+M I P
Sbjct: 365 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 424
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSVDAKKVDKVYEILH 284
+Y + FC +G+ + AY M E + P P +L+ A ++ K E++
Sbjct: 425 NTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVE 484
Query: 285 RL 286
++
Sbjct: 485 KM 486
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 16/132 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA R++ + + GI + + Y++++ C+ G + R
Sbjct: 262 RAGNISEAERVFGEMKMAGIQPNVYTYSIVIDAL-CRSGQ---------------ITRAH 305
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +MI DPN TF ++ R+ V E + QMK G PP +Y +
Sbjct: 306 DVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIESH 365
Query: 236 CKLGNTDKAYEV 247
C+ N ++A ++
Sbjct: 366 CRDDNLEEAVKI 377
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F + D+ +P+ +TS+ + A + +MK GI P + +Y + C+
Sbjct: 238 FFDSLKDRFEPDVVVYTSLVHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCR 297
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
G +A++V + M + G P + L+++ V A + +KV ++ ++++ L
Sbjct: 298 SGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRL 349
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 167 SNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
S LG + +F +M K PN T+ + R+ K+ +M L K+M I P
Sbjct: 400 SKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNA 459
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-PEEPELSALLKLSVDAKKVDKVYEILH 284
+Y + FC +G+ + AY M E + P P +L+ A ++ K E++
Sbjct: 460 NTYRVLISTFCGIGHWNNAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVE 519
Query: 285 RL 286
++
Sbjct: 520 KM 521
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPKLRSYGPA 231
R E+ +QM PN T+ +V ++ + A D++++M+ GI P +YG
Sbjct: 501 RALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTV 556
Query: 232 LFGFCKLGNTDKAYEV-DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK+G D+A +V D + + V PE +AL+ D K+D +L+R R +
Sbjct: 557 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA--LLYRDRMVE 614
Query: 291 RQVS 294
R V+
Sbjct: 615 RGVA 618
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK+G V E +L+D+A GI YN L+ + S +G+ + R
Sbjct: 702 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALI--------NSHSTSGN--------IDRA 745
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FEI +M ++ P++ T+ ++ R + A L+ +M GI P L +Y + G
Sbjct: 746 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 805
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ A + M G P +AL++
Sbjct: 806 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 839
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G+V +AL ++++ G+ + Y L+Y S K + ++
Sbjct: 668 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD---------------- 711
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F + + + P+ + ++ + + AF+++ +M+ I P +Y + G
Sbjct: 712 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 771
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
C LG D+A ++ M E G+ P+
Sbjct: 772 CLLGRVDEARKLIDEMTERGIQPD 795
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 19/181 (10%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+L H L M RG EA L ++ G+ YN+L+ CK G+
Sbjct: 626 LLVHALFM-DGRGT--EAYELVEEMGGKGLAPDVFTYNILIN-GHCKEGN---------- 671
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+K+ EIF+ M V T+T++ K + L + GI P L
Sbjct: 672 -----VKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDL 726
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
Y + GN D+A+E+ M + + P++ + L++ +VD+ +++
Sbjct: 727 VLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDE 786
Query: 286 L 286
+
Sbjct: 787 M 787
>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK E+F+ M++D + PN T T + + AF + +++ FG+ P L +Y
Sbjct: 439 LKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPSLCTYRV 498
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK+ + + + A M + G VP+ S ++ V A + + + + +++
Sbjct: 499 IIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKM 554
Score = 43.5 bits (101), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+GDV + + NGIT + Y+ LL+ C+ G
Sbjct: 325 VDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGL-CRAGR--------------- 368
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ FE+F+++ + ++ V D E+ +DL M P +Y
Sbjct: 369 VELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSS 428
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
++ +C+ +A EV M G+ P + L+ + + + + L ++R
Sbjct: 429 LIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFG 488
Query: 291 RQVSESTFKII 301
S T+++I
Sbjct: 489 VVPSLCTYRVI 499
Score = 42.7 bits (99), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V +A+ ++D + G H Y++L+ + GD + G+ +
Sbjct: 297 GQVHKAIEVFDGMKKCGFVPDVHSYSILV--------DGLCKQGD--------VLTGYYM 340
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+M + + PN +++S+ E+AF+L K++K G Y L G C+
Sbjct: 341 LVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQ 400
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ + Y++ M VP+ S+L+ +++ + E+
Sbjct: 401 HLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVF 446
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M+ PN TF ++ E +++ QM G P +R Y + G
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGI 307
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ + A+E+ M G+ P + LLK A++ ++ E+L + + +
Sbjct: 308 CKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367
Query: 296 STFKIIEDWF 305
TF I+ D+F
Sbjct: 368 VTFNILVDFF 377
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ QMI N TF ++ K E A +L+KQM G P L SY + G
Sbjct: 458 DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 517
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G TD+A E+ M G+ P S++ +++KV ++ ++
Sbjct: 518 GKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQ 569
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 45/113 (39%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ M+ + PN ++S+A + + ++ I Y +
Sbjct: 526 ALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS 585
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G T++A E A+M SG VP E + L++ V + E+L L
Sbjct: 586 SLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 638
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 21/200 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++ + +A + +D GI S Y +++ + GSE +
Sbjct: 394 IDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPK----------- 442
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+IF +MI ++P+ T+T R + E A ++ QM G+ P L +Y
Sbjct: 443 -----KIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNT 497
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI-----LHR 285
+ G+ LG +A+ M G P E + LL+L V D +I +
Sbjct: 498 LIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKD 557
Query: 286 LRTLVRQVSESTFKIIEDWF 305
L+ L+ ++E + D +
Sbjct: 558 LQVLLEDITERQLPLAADIY 577
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ F + M T+ + PN+ TF+ + +E E A + + G+ Y
Sbjct: 298 LQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTS 357
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G D A E+ M G VP+ S+L+ KK+ + +L +
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417
Query: 291 RQVSESTFKIIED 303
Q S T+ II D
Sbjct: 418 IQASPVTYTIIID 430
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++F+ M ++ PN T+T + E A L +M G+ P + +Y
Sbjct: 228 MEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTA 287
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G C G+ A+ + M +G+VP + S L+ +KV++ L L
Sbjct: 288 LIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKG 347
Query: 291 RQVSESTFKIIEDWF---DSVDAAE 312
+V+E + + D +DAA+
Sbjct: 348 VKVNEVVYTSLIDGLCKTGKIDAAD 372
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFE 176
G V EA+ ++ R++ H Y +++ +C E+ + E + GFE
Sbjct: 156 GMVREAMTVFVGMRADSCAPDTHVYATMVHGLC------EAGRTEEAEVLLEEAMSNGFE 209
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
PN + ++ + E A + + M P +R+Y + G C
Sbjct: 210 -----------PNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLC 258
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G ++A + + M E+G+ P +AL++ + + + +LH + T ++
Sbjct: 259 KSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDW 318
Query: 297 TFKIIED 303
TF ++ D
Sbjct: 319 TFSVLID 325
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+++ + P ++T++ R A+ A L++ M++ G+ P + +YG + G C
Sbjct: 103 RVMAHETRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAA 162
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYE 281
+ DKA E+ M ESG+ P S LL+ A + V KV+E
Sbjct: 163 DVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFE 207
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
MC K G V EA+ L ++ G+ L YN L+ + +G E D +GL
Sbjct: 263 MC-KEGSVKEAMSLRNNMLEKGVALDAVTYNTLI----------TGLSGVLEMDEAMGL- 310
Query: 173 RGFEIFQQMITDK--VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++MI + V+PN TF SV AF + M G L ++
Sbjct: 311 -----LEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNL 365
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G ++ KA E+ M SG+ P+ S L+ +VD+ +L ++R
Sbjct: 366 LIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMR 422
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G + +A +Y++ S G + Y+ L++ S R++D +
Sbjct: 204 RKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLA----------RKHD------QAH 247
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F+ MI+ PN T+ + + P+ A +L ++M G P +Y L+GF
Sbjct: 248 ELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGF 307
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
C +G ++A EV M G P+ + LLK
Sbjct: 308 CNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLK 340
Score = 46.2 bits (108), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++++MI+ P+ T++++ + A +L + M S G P +Y L G C
Sbjct: 214 VYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLC 273
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K D+A+E+ M E G P++ + LL + K+++ E+ +
Sbjct: 274 KESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFDEM 323
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 16/199 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G V +A RLY+ + + Y L+ KCG R+ D
Sbjct: 484 IDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIK-SFFKCG--------RKED---- 530
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
G +IF++MI P+ + + L +++KS G P + SY
Sbjct: 531 ---GHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSI 587
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K G + YE+ M E G V + + + + KV+K Y++L ++T
Sbjct: 588 LIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKG 647
Query: 291 RQVSESTFKIIEDWFDSVD 309
RQ + T+ + D +D
Sbjct: 648 RQPTVVTYGSVIDGLAKID 666
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 80/196 (40%), Gaps = 19/196 (9%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+L H L K G E L+ + G L H YN + CK G
Sbjct: 587 ILIHGL---VKAGFARETYELFYAMKEQGCVLDTHAYNTFI-DGFCKSGK---------- 632
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+ + +++ ++M T P T+ SV + + A+ L ++ KS G+ +
Sbjct: 633 -----VNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNV 687
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
Y + GF K+G D+AY + + + G+ P + LL V A+++++
Sbjct: 688 VIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQN 747
Query: 286 LRTLVRQVSESTFKII 301
++ L + T+ I+
Sbjct: 748 MKNLKGTPNHITYSIL 763
Score = 38.9 bits (89), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 72/177 (40%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + EA + ++ G+T + + +N LL ++ + N++
Sbjct: 694 IDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLL---------DALVKAEEINEA--- 741
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
FQ M K PN T++ + AF ++M+ G+ P +Y
Sbjct: 742 ----LVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTT 797
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G K GN +A + +G VP+ +A+++ +++ + Y+I R
Sbjct: 798 MIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETR 854
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPA 231
R E+ +QM PN T+ +V ++ + A D++++M+ G I P +YG
Sbjct: 59 RALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTV 114
Query: 232 LFGFCKLGNTDKAYEV-DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK+G D+A +V D + + V PE +AL+ D K+D +L+R R +
Sbjct: 115 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA--LLYRDRMVE 172
Query: 291 RQVS 294
R V+
Sbjct: 173 RGVA 176
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK+G V E +L+D+A GI YN L+ + S +G+ + R
Sbjct: 260 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALI--------NSHSTSGN--------IDRA 303
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FEI +M ++ P++ T+ ++ R + A L+ +M GI P L +Y + G
Sbjct: 304 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISG 363
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ A + M G P +AL++
Sbjct: 364 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 397
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G+V +AL ++++ G+ + Y L+Y S K + ++
Sbjct: 226 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD---------------- 269
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F + + + P+ + ++ + + AF+++ +M+ I P +Y + G
Sbjct: 270 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 329
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
C LG D+A ++ M + G+ P+
Sbjct: 330 CLLGRVDEARKLIDEMTKRGIQPD 353
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA L ++ G+ YN+L+ CK G+ +K+ EIF+ M
Sbjct: 197 EAYELVEEMGGKGLAPDVFTYNILIN-GHCKEGN---------------VKKALEIFENM 240
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
V T+TS+ K + L + GI P L Y + GN
Sbjct: 241 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 300
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+A+E+ M + + P++ + L++ +VD+ +++ +
Sbjct: 301 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 345
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 22/174 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR-- 173
K G V +A + D R GI + H YN L+ L L+R
Sbjct: 379 KSGKVDQAFDMLDVMRVRGIVPNLHTYNTLI-------------------SGLLNLRRLD 419
Query: 174 -GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+F M + V P ++ DPE A D ++MK GI P + + +L
Sbjct: 420 EALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASL 479
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ ++G +A ++ + G+ P+ + ++K A ++DK ++L +
Sbjct: 480 YSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEM 533
Score = 42.4 bits (98), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 65/336 (19%), Positives = 133/336 (39%), Gaps = 57/336 (16%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
++ G + EA +++D + G++ YN+++ KC S++ + + +
Sbjct: 483 AEMGRIREAKDIFNDIHNCGLSPDSVTYNMMM-----KCYSKAGQ-----------IDKA 526
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ +M+++ +P+ S+ + A+ + ++K + P + +Y + G
Sbjct: 527 TKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITG 586
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL----- 289
K G KA ++ M ESG P +ALL VD ++ R+ +
Sbjct: 587 LGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPD 646
Query: 290 VRQVSESTFKIIED-------WF----------DSVDAAEI-------GVLNWDVSKVRE 325
V + + +I++ WF D V + G + + V E
Sbjct: 647 VLTYNTIIYGLIKEGRAGYAFWFYHQMKKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVME 706
Query: 326 GIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNL 385
+ + G Q W + + +I+E S E LVC I + +N L +
Sbjct: 707 FVHQSGLQTSNQVWGELMECILIEAEIEE---AISFAEGLVCNSI--CQDDNLILPLIRV 761
Query: 386 ACQREVRSD----FNKFQEWLGRH---GPFDAVIDG 414
C+++ D F+KF + LG H ++ ++DG
Sbjct: 762 LCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDG 797
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D G + +A LY R+ S H +++ Y+ S+ GD E
Sbjct: 304 IDALCAAGKLDKAKELYTKMRA-----SSHKPDLVTYI---TLMSKFGNYGDLET----- 350
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR + +M D P+ T+T + + AFD++ M+ GI P L +Y
Sbjct: 351 VKR---FWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNT 407
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G L D+A E+ +M GV P
Sbjct: 408 LISGLLNLRRLDEALELFNNMESLGVAP 435
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/154 (18%), Positives = 69/154 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + E++ +M P+ T+ ++ D E +M++ G P + +Y
Sbjct: 313 LDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTI 372
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK G D+A+++ M G+VP + L+ ++ +++D+ E+ + + +L
Sbjct: 373 LVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLG 432
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR 324
+ ++ + D++ + E + ++ K R
Sbjct: 433 VAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKR 466
Score = 39.3 bits (90), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 16/138 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EAL++Y S G+ S Y+ L+ G R + + ++ ++M
Sbjct: 210 EALKVYKRMISEGLKPSMKTYSALMVAL-----------GRRRDTGTI-----MDLLEEM 253
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
T + PN T+T R+ + A+ ++K M+ G P + +Y + C G
Sbjct: 254 ETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKL 313
Query: 242 DKAYEVDAHMGESGVVPE 259
DKA E+ M S P+
Sbjct: 314 DKAKELYTKMRASSHKPD 331
>gi|297827231|ref|XP_002881498.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327337|gb|EFH57757.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 756
Score = 52.4 bits (124), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 23/171 (13%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
ALR +DD ++ GI+ YN ++ C K E+ + +F +M
Sbjct: 273 ALRFFDDMKTRGISPDAVTYNTIINGYCRFKKMDEAEK-----------------LFVEM 315
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ +P+ T+T++ + ++ + + + ++M+SFGI P +Y L G C +G
Sbjct: 316 KGNNSEPSVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFGIEPNATTYSTLLPGLCDVGKM 375
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY---EILHRLRTL 289
+A + +M + P++ S LKL V K + E+L + TL
Sbjct: 376 VEAKNILKNMMAKHIAPKDN--SIFLKLLVSQSKAGDMAAATEVLKAMATL 424
Score = 42.7 bits (99), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 26/191 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V E+++++ + G+ + YN L V L+RG
Sbjct: 196 KAGIVQESVKIFQKMKDLGVERTIKSYNTLFKVI---------------------LRRGR 234
Query: 176 EI-----FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F +M+++ V+P T+ + E A MK+ GI P +Y
Sbjct: 235 YMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFDDMKTRGISPDAVTYNT 294
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C+ D+A ++ M + P + ++K + +VD I +R+
Sbjct: 295 IINGYCRFKKMDEAEKLFVEMKGNNSEPSVVTYTTMIKGYLSVDRVDDGLRIFEEMRSFG 354
Query: 291 RQVSESTFKII 301
+ + +T+ +
Sbjct: 355 IEPNATTYSTL 365
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 98/240 (40%), Gaps = 24/240 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G + EALRL + + G + N+ + S C S E R
Sbjct: 374 MDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNI---IASGFCRSNRREEAKR------- 423
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ M V PN +F+ + + +++ A L K M+ G P + +Y
Sbjct: 424 ------LLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNA 477
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ +CK G ++AY++ M E G++P+ ++L+ + VD+ E+ + + L
Sbjct: 478 FIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLG 537
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGW-------HGQGWLGSG 343
+ T+ +I A+ +D +EGIV G + H G L SG
Sbjct: 538 LNRNVVTYTVIISGLSKDGRADEAFKLYDEMN-KEGIVPDDGIYSSLIASLHKVGPLVSG 596
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 76/195 (38%), Gaps = 16/195 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G+V A L D+ G S YN LL NG E G
Sbjct: 199 VDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLL-------------NGYIEIKDVGG 245
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ EI M + VD N T+T + E A L +M GI P + Y
Sbjct: 246 VN---EILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTS 302
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK GN +A+ + M E +VP AL+ + A ++ +++ +++
Sbjct: 303 IINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKG 362
Query: 291 RQVSESTFKIIEDWF 305
V+ F + D +
Sbjct: 363 VDVNRVIFNTLMDGY 377
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 16/141 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S+ + EA +L+D+ GI + Y ++ +CK G+ +KR
Sbjct: 273 SRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIIN-WNCKFGN---------------MKRA 316
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
F +F +M ++ PN T+ ++ A + + A +V M+S G+ + + G
Sbjct: 317 FVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDG 376
Query: 235 FCKLGNTDKAYEVDAHMGESG 255
+CK G D+A + M + G
Sbjct: 377 YCKKGMIDEALRLQNIMQQKG 397
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 24/205 (11%)
Query: 111 LDMCSKRGDVFE-ALRLYDDARSNGITLSQHHYNVLLYVCSCKCG------SESSENGDR 163
+D C K G F+ L ++D+ NG+ + +N LL VCS K G S S E +R
Sbjct: 154 IDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCS-KGGLWEAARSLSCEMVNR 212
Query: 164 ENDSNL--------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMA 209
D ++ L FEI +M + PN T++++ + A
Sbjct: 213 GIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDA 272
Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
+L +MK GI SY L + KLG ++A +V M SG+ + +ALL
Sbjct: 273 RNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGG 332
Query: 270 SVDAKKVDKVYEILHRLRTLVRQVS 294
K D V ++ ++ R VS
Sbjct: 333 YGKQYKYDVVRKVFEEMKA--RHVS 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA++++ + G+ + YN ++ C K G E KR EIF +M
Sbjct: 130 EAIKIFYSMKDYGLKPNLVTYNAVIDACG-KGGVE--------------FKRVLEIFDEM 174
Query: 182 ITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+ + + P+ TF S+ LAV + E A L +M + GI + +Y L CK G
Sbjct: 175 LRNGMQPDRITFNSL--LAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGG 232
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
D A+E+ + M ++P S ++ A ++D + + ++ L
Sbjct: 233 QLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFL 282
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 54/131 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G +I M+ PN TF S+ + E AF L+ M S GI P YG
Sbjct: 454 VAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGT 513
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK G D A V M GV P + +L A++ ++ H +
Sbjct: 514 LVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESG 573
Query: 291 RQVSESTFKII 301
VS T+ ++
Sbjct: 574 TTVSIQTYGVV 584
Score = 42.0 bits (97), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ +E+F +MI V P+ T+ S+ ++ + +++QM GI P ++Y +
Sbjct: 175 KAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLI 234
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVP 258
+G+ G ++ V M SG++P
Sbjct: 235 YGYSTAGMWKESVRVFKEMSSSGLIP 260
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
PE+A + ++ G+ P + SY + GF K G DKAYE+ M E V P+ ++
Sbjct: 138 PELALAVFGRLLRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNS 197
Query: 266 LLKLSVDAKKVDKVYEILHRL 286
L+ K++ K +L ++
Sbjct: 198 LIDGLCKTKEMVKSERVLEQM 218
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 19/215 (8%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCS-------CKCGSESSENGDRENDSN 168
RG V EAL +++ G + YN L++ +CS S+ NG N S
Sbjct: 332 RGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVST 391
Query: 169 LG-LKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
G L GF EI+ +M+T+ PN +TS+ + A+ L+++M
Sbjct: 392 YGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMS 451
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ PP ++ + G C G + A + M + G P + +L + ++
Sbjct: 452 TDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIK 511
Query: 278 KVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE 312
+ E++ + +++ T+ I F +V E
Sbjct: 512 EALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFE 546
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 60/146 (41%), Gaps = 16/146 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K GD+ A +++ +NG NV++Y SS
Sbjct: 396 IDGFAKAGDLVGASEIWNKMMTNGCI-----PNVVVYTSMVNVLCRSSM----------- 439
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + + ++M TD PN TF + + E A +L QM+ +G P +++Y
Sbjct: 440 FSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNE 499
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGV 256
L G K +A E+ M E G+
Sbjct: 500 VLDGLLKENRIKEALELVTEMEEKGM 525
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ Q+M+ K++PN T++++ V + A +L +M GI P +Y + GFC
Sbjct: 306 LLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFC 365
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K D A + M G P+ + L+ AK++D E+LH +
Sbjct: 366 KQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM 415
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K FEA LYD+ GI + YN ++ + ++N L
Sbjct: 331 KERKFFEAEELYDEMLPRGIIPNTITYNSMI------------DGFCKQNR----LDAAE 374
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F M T P+ TF ++ + + +L+ +M G+ +Y + GF
Sbjct: 375 HMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGF 434
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
C +G+ + A ++ M SGV P+ + LL D K+ E+ ++
Sbjct: 435 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 486
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E++++M + PN T++S+ + + A + M S P + ++ + G+
Sbjct: 526 ELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGY 585
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
CK G D E+ MG G+V +
Sbjct: 586 CKAGRVDDGLELFCEMGRRGIVAD 609
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 49/117 (41%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
GL+ ++F M+ + P+ F + + V E P++ L ++M+ IP + S+
Sbjct: 57 GLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFN 116
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FC A + + G P+ S LL +V + ++ H++
Sbjct: 117 ILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM 173
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++++MI K+ PN TF +V A D+V MK +G P + +Y + G+C
Sbjct: 217 VYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYC 276
Query: 237 KLGNTDKAYEVDA---HMGESGVVPEEPELSALL 267
K+G K Y+ DA M E+ V P + L+
Sbjct: 277 KMGRVGKMYKADAILKEMVENKVSPNSVTFNVLI 310
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 93/204 (45%), Gaps = 19/204 (9%)
Query: 100 RESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSES 157
+ SP V + L D K ++ AL+++++ +S G+ + YN L+ +C
Sbjct: 298 KVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLC-------- 349
Query: 158 SENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
N + N++ + + +M++ + PN T+ ++ K+ E A +L +
Sbjct: 350 --NEGKLNEAKV-------LLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIG 400
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ P + ++ L G+CK G ++A+ + M E G +P + L+ K++
Sbjct: 401 KQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKME 460
Query: 278 KVYEILHRLRTLVRQVSESTFKII 301
+V +L+ ++ + T+ I+
Sbjct: 461 EVKNLLNEMQCRGVKADTVTYNIL 484
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I ++M+ +KV PN TF + E+ A + ++M+S G+ P + +Y + G C
Sbjct: 290 ILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLC 349
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G ++A + M S + P +AL+ K +++ E+ +
Sbjct: 350 NEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNI 399
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + EA ++ A S G+ L + Y +L+ +E + G +
Sbjct: 404 KKGKIQEAYKVLRMATSQGLHLDKVTYTILI--------TEHCKQGH--------ITCAL 447
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F+QM P+ T+T++ + + E + L + S G+ P ++Y + G+
Sbjct: 448 DLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGY 507
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C+LG A +V M + G +P+ AL+
Sbjct: 508 CRLGKLTSALKVFERMVQHGCLPDSITYGALI 539
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 171 LKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
++R F +F +++ + PN T+T + + A L+ +M G+ P +Y
Sbjct: 302 MERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYT 361
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G CK G+ D+A+E+ M G +P +A++ K+ + Y++L +
Sbjct: 362 TLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQ 421
Query: 290 VRQVSESTFKII 301
+ + T+ I+
Sbjct: 422 GLHLDKVTYTIL 433
>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1071
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G AL L D S GI YN+L+ ++ + N S +G+
Sbjct: 215 KKGRYKAALELIDQMGSKGIEADACTYNMLV------------DDLCKNNRS----AKGY 258
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M + PNE T+ S+ V + A + ++M + P +Y + G
Sbjct: 259 LLLKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGH 318
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
C GN ++A + M +G P E SALL K + IL R+R
Sbjct: 319 CHDGNFEQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMR 370
Score = 47.4 bits (111), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M+ +V P+ +TF + + + + A L+K+M+ G P + +Y L +CK
Sbjct: 156 FKEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCK 215
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G A E+ MG G+ + + L+ + K Y +L ++R + +E T
Sbjct: 216 KGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEIT 275
Query: 298 FKIIEDWFDSVDAAEIG 314
+ I + F V +IG
Sbjct: 276 YNSIINGF--VKEGKIG 290
>gi|356571194|ref|XP_003553764.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g04760, chloroplastic-like [Glycine max]
Length = 531
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 17/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ MC + G V A + S G L YN+LL R +
Sbjct: 201 IXMC-REGYVDRAFEVISSISSKGYALDVITYNILL----------------RSLXNQGK 243
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ GFE+ M+ + N T++ + E L+K MK G+ P Y P
Sbjct: 244 WEAGFELMSDMVAKGCEANVVTYSVLISSLCRDGKVEEGVGLLKDMKKKGLEPDGYCYDP 303
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ CK G D A EV M G VP+ + +L K+ D+ I +L
Sbjct: 304 LIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKL 359
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 81/201 (40%), Gaps = 30/201 (14%)
Query: 93 KSKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC 151
K KK E P+G L + K G V A+ + D S+G +YN +L C C
Sbjct: 287 KDMKKKGLE-PDGYCYDPLIAVLCKEGRVDLAIEVLDVMISDGCVPDIVNYNTIL-ACLC 344
Query: 152 K----------------CGSESSENGDRENDSNLGLK----RGFEIFQQMITDKVDPNEA 191
K G + + S LG R + +M+ D VDP+
Sbjct: 345 KQKRADEALSIFEKLGEVGCSPNASSYNTVFSALGSSGHKVRALGMILEML-DXVDPDVI 403
Query: 192 TFTSV----ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
+ S+ R + E E+ D+ +M+S P + SY L G C++G A EV
Sbjct: 404 AYNSLISCLCRDGMVDEAIELLVDM--EMESSECKPSVVSYNIVLLGLCRVGRVSDATEV 461
Query: 248 DAHMGESGVVPEEPELSALLK 268
A M + G +P E + L++
Sbjct: 462 LAAMVDKGCLPNETTYTFLIE 482
>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Glycine max]
Length = 693
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ ++ PN T+T++ E A L+ +MK G+ P +Y
Sbjct: 324 EKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTT 383
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G CK GN ++AYE+ M E G P +A++ +V + Y++L
Sbjct: 384 LIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVL 436
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 74/171 (43%), Gaps = 22/171 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G V EA ++ NG+ + Y +L+ SE + +
Sbjct: 420 VDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILI--------SEHCKQAE-------- 463
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE---DPEMAFDLVKQMKSFGIPPKLRS 227
+K+ +F +M+ + P+ ++T++ + ++ + EM F+ + FG+ P ++
Sbjct: 464 IKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFE---EAVRFGLVPTNKT 520
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
Y + G+C+ GN A + M + G + AL+ K+D+
Sbjct: 521 YTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQSKLDE 571
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL-VKQMKSFGIPPKLRSYG 229
+K+ FE+ ++M+ PN T T++ K E AF L +K ++S P + +Y
Sbjct: 288 VKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYT 347
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ G+C+ ++A + + M E G+ P + L+ A ++ YE+++
Sbjct: 348 AMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMN 402
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K E+ +M + P+ T V ++ E A +L +M + G+ P SY
Sbjct: 148 VKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRV 207
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+CKLGN ++ M E G V + LS +++
Sbjct: 208 MVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVR 245
>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 83/204 (40%), Gaps = 23/204 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C K GD+ AL + D GI L + L+ S C + +R
Sbjct: 408 MDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALI---SGLCRDGRVRDAER------- 457
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + M++ P++ T+T V K D +M L+K+M+ G P + +Y
Sbjct: 458 ------MLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNA 511
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LSVDAKKVDKVYEILH 284
+ GFCK G A + M VVP + + LL SVD K + ++
Sbjct: 512 LMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVDFKIFNGEKGLVS 571
Query: 285 RLRTLVRQVSESTFKIIEDWFDSV 308
+ V+ES KI +D SV
Sbjct: 572 DYASYTALVNES-IKISKDQLKSV 594
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 78/193 (40%), Gaps = 25/193 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG-------------- 161
K GDV A ++D+ G+ S +N L+ S C S++ E G
Sbjct: 238 KIGDVMNARMVFDEISRRGLRPSVVSFNTLI---SGYCRSKNVEEGFVLKSVMESERISP 294
Query: 162 DRENDSNL--GL------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
D S L GL + +F +M + PN TFT++ ++A
Sbjct: 295 DVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNF 354
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ MK GI P L +Y + G C+ G+ +A ++ M +G P++ + L+
Sbjct: 355 EIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKD 414
Query: 274 KKVDKVYEILHRL 286
+D EI R+
Sbjct: 415 GDMDSALEIKDRM 427
>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 585
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 63/133 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F ++ + + + +F + E A++L +++ G+ P + +Y
Sbjct: 428 LFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCI 487
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFCK G D A + M E+G P SALL K+++V ++LH++
Sbjct: 488 MINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKD 547
Query: 291 RQVSESTFKIIED 303
++ S + I+ED
Sbjct: 548 VSLAASIYTIVED 560
Score = 42.0 bits (97), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ + M+ + P+ TFTS+ D + A +L M S G P + SY ++G+
Sbjct: 293 KFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGY 352
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
CK N ++A ++ M G P+ LLK A KV
Sbjct: 353 CKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKV 393
>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01030, mitochondrial; Flags: Precursor
gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 768
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + +M + + P+ T+ S+A PE A D++ +MK G+ P + S+
Sbjct: 307 LKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTA 366
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
G K GN A +V M E GV P +S LLK+
Sbjct: 367 IFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKI 405
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 17/165 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ EA RL+ + G T S YNV++ + K +E +E + K+GF
Sbjct: 434 KDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEME-----KKGF 488
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
P+ T+ S+ ++A L ++MK G P + +Y + G
Sbjct: 489 V-----------PDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 537
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL-KLSVDAKKVDKV 279
K G ++ A+++ M ++G++P++ SAL+ L D +K KV
Sbjct: 538 AKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKDVKV 582
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 40/236 (16%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++G V +AL++ G+ L + YN L CG D
Sbjct: 359 IDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTL------ACGLCRVNRLDEAK----- 407
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ MI V PN T+T++ + D A L ++M G P + +Y
Sbjct: 408 -----TLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNV 462
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR--- 287
+ G+ K G+ +A M + G VP+ ++L+ KVD ++ ++
Sbjct: 463 MIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRG 522
Query: 288 ---------TLVRQV-----SESTFKIIEDWF-------DSVDAAEIGVLNWDVSK 322
L+ + SE+ F++ +D DS+ +A +G L+ D K
Sbjct: 523 TEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRK 578
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V +A RL DD +G++L+ YN LL C ++G
Sbjct: 184 VDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLL-----DCYVRQKDDG--------- 229
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
R EI + M + ++ T+T + D L +MK+ + + Y
Sbjct: 230 --RVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTA 287
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ +C+ GN +A +V +GV P E L+
Sbjct: 288 VINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLI 324
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ ++M + P+ T+ S+ E A L++ M + P L +Y
Sbjct: 189 LSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNT 248
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
++G+CK G T A+++ M +SG P+ ++L+ K+DK E+LH ++
Sbjct: 249 LIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMK 305
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 21/205 (10%)
Query: 86 NTGTMSNKSK--KKARRESPEGVLRHKL--DMCSKRGDVFEALRLYDDARSNGITLSQHH 141
NTG +S + +++ +P+ VL + L +C K + EA ++ ++ GI
Sbjct: 152 NTGNLSRAMQYFRESVECAPDSVLFNILVHGLC-KANQLSEARQMIEEMSERGIVPDVVT 210
Query: 142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
YN L+ C S E ++ + M+ KV PN T+ ++
Sbjct: 211 YNSLI---DGLCKSYRMEEAR-------------QLLETMVKRKVRPNLVTYNTLIYGYC 254
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+A L+++M G P + ++ + GFC+ DKA EV M + P
Sbjct: 255 KTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLV 314
Query: 262 ELSALLKLSVDAKKVDKVYEILHRL 286
+ L+ DA + ++ E+L +
Sbjct: 315 TYNVLISGLCDAGRANEACELLSEM 339
Score = 43.5 bits (101), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 52/107 (48%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ ++MI P+ TF S+ K + A +++ MK P L +Y + G
Sbjct: 264 QLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGL 323
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
C G ++A E+ + M G++P+ ++L+ + ++++ ++I
Sbjct: 324 CDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQI 370
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 22/174 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + EA+ L + S + YN L+Y CK G
Sbjct: 536 IDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGV-CKEGK--------------- 579
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ G + + M V P AT+T + + + D + A + QM SFG P + +Y
Sbjct: 580 VQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTA 639
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL------LKLSVDAKKVDK 278
+ +C GN +A + A M E+GV+P+ + L L L+ DA V K
Sbjct: 640 FIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAFNVLK 693
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 84/191 (43%), Gaps = 17/191 (8%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
MC +R + E+ R+ ++ G+ S YN L+ C+ G ++
Sbjct: 364 MCKER-KLDESRRILNEMMEKGLVPSVVTYNALIR-GYCEEGR---------------IE 406
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
EI M ++ PNE T+ + ++ A L+ +M + P L +Y +
Sbjct: 407 AALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLI 466
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
CK G+ D AY++ + E+G+VP++ S + +K++++ ++ + L+ +
Sbjct: 467 HVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIK 526
Query: 293 VSESTFKIIED 303
+E + + D
Sbjct: 527 ANEVMYTALID 537
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 48/113 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ G +F++M D P T+T + + DL +M+ P + +Y
Sbjct: 300 IDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTV 359
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ CK D++ + M E G+VP +AL++ + +++ EIL
Sbjct: 360 MVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEIL 412
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 93/236 (39%), Gaps = 23/236 (9%)
Query: 52 ITDIKQNRFSAD-LTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHK 110
++ I Q S D T L + + + VN S+ M NK + R E + H
Sbjct: 237 VSKIFQAGLSPDSFTYTSLILGYCRNNDVN-SAYKVFNMMPNKGCR--RNEVSYTTIIHG 293
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L + G + E + L+ R + + Y V+++ ND NL
Sbjct: 294 L---CEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALF-------------GNDRNL- 336
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
G ++F +M +PN T+T + + + + ++ +M G+ P + +Y
Sbjct: 337 --EGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNA 394
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G+C+ G + A E+ M + P E + L+ K V K +L ++
Sbjct: 395 LIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKM 450
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + AL + SN ++ YN L+ CG ++ + +
Sbjct: 401 EEGRIEAALEILGLMESNNCRPNERTYNELI------CGFSKRKH----------VHKAM 444
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ +M+ K+ P+ T+ S+ + + A+ L+ +K G+ P +Y +
Sbjct: 445 TLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTL 504
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
CK ++A ++ + E G+ E +AL+ A K+D+ +L R+ +
Sbjct: 505 CKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHS 557
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 16/187 (8%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SKR V +A+ L + +T S YN L++V CK G S
Sbjct: 435 SKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHV-QCKAGHFDS---------------A 478
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+++ + + + P++ T++ + E A DL +K GI Y + G
Sbjct: 479 YKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDG 538
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
CK G D+A + M +P ++L+ KV + ++ + + + +
Sbjct: 539 HCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPT 598
Query: 295 ESTFKII 301
+T+ I+
Sbjct: 599 VATYTIL 605
>gi|5262157|emb|CAB45786.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7267600|emb|CAB80912.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 500
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + +M + + P+ T+ S+A PE A D++ +MK G+ P + S+
Sbjct: 39 LKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTA 98
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
G K GN A +V M E GV P +S LLK+
Sbjct: 99 IFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKI 137
>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
Group]
gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 543
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 21/243 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + EA R++ + + G+T NV Y + + + R
Sbjct: 261 RSGRLNEAERVFAEMQQAGVT-----PNVYTYTAVIDAMYRAGQ-----------VPRAQ 304
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI PN ATF ++ R V E + QM+ G P + +Y +
Sbjct: 305 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETH 364
Query: 236 CKLG--NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C G N D A ++ M G +P+ + +LKL + V+ ++ R++ L +
Sbjct: 365 CGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKP 424
Query: 294 SESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHG--QGWLGSGKWRVERTQ 351
+ T+ ++ F+ + ++ VL +G+ + + + G G W+
Sbjct: 425 NVVTYNLLMRLFNLEKSMDM-VLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMT 483
Query: 352 IDE 354
+ E
Sbjct: 484 LRE 486
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 72/154 (46%), Gaps = 2/154 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F++ M+ V PN T+T+++ + D + A +L+ +M + G+ +Y
Sbjct: 450 MAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNS 509
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G D+A A M +G+ P+ + L+ + ++D+ +++L +
Sbjct: 510 LINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNG 569
Query: 291 RQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSK 322
+ + T+ ++ + F E G +L W + K
Sbjct: 570 IKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEK 603
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 77/190 (40%), Gaps = 16/190 (8%)
Query: 112 DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL 171
D K+GDV A L + + G+ L+ YN L+ CK G L
Sbjct: 477 DGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGL-CKAGY---------------L 520
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ M + P+ T+T++ + + A DL+++M GI P + +Y
Sbjct: 521 DQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVL 580
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GFC G + ++ M E + P ++L+K + EI + +
Sbjct: 581 MNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNV 640
Query: 292 QVSESTFKII 301
+ +E+T+ I+
Sbjct: 641 EPNENTYNIL 650
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 71/177 (40%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G++ A L + NGI + YNVL+ + C S E G +
Sbjct: 546 IDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLM---NGFCMSGRVEGGKK------- 595
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + M+ + PN T+ S+ + + + ++ K M S + P +Y
Sbjct: 596 ------LLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNI 649
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK + +A M E G SAL++L KK + ++ H +R
Sbjct: 650 LIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMR 706
Score = 39.3 bits (90), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 53/135 (39%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ ++ M+ V+PN +TSV L K A +V+ M + Y
Sbjct: 310 LENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTT 369
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L GFC G+ A M G+ + + L+ A ++ + ++L +
Sbjct: 370 VLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARR 429
Query: 291 RQVSESTFKIIEDWF 305
V E T+ ++ D +
Sbjct: 430 LDVDEVTYTVLVDGY 444
>gi|302771776|ref|XP_002969306.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
gi|300162782|gb|EFJ29394.1| hypothetical protein SELMODRAFT_61378 [Selaginella moellendorffii]
Length = 587
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 21/164 (12%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCG-----------SESSENG 161
C + G + + +Y + RS G +S +N L VC CK G S S
Sbjct: 111 CCRSGRLDTCVEIYQEMRSRGFRVSHLAFNSL--VCGLCKAGRTDEAWDVLGKSRPSACA 168
Query: 162 DRENDSNL-------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
D S + R E+ + M +V PN T+TSV + A L++
Sbjct: 169 DAVTLSTVIHALCSSDCDRALELMRAMQAQRVPPNVVTYTSVIDGLCKAGRRDAAMVLLQ 228
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
QM++ G P +Y + CK G + A+ + M G P
Sbjct: 229 QMQAAGCSPNTVTYNCLIHSLCKAGKLEDAFALLRGMPSKGCTP 272
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 74/180 (41%), Gaps = 25/180 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +RG + A+ GI ++ + YN L+ CK G+ S+ + + G
Sbjct: 408 IDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLIN-GHCKLGNLSAAVSFFDEMIDKG 466
Query: 171 LK--------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
LK F ++ +M + PN TFT++ AF
Sbjct: 467 LKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAF 526
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE----EPELSAL 266
L +M + P +Y + G CK GNT KA+E+ M + G+VP+ P +S+L
Sbjct: 527 RLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSL 586
Score = 45.8 bits (107), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 47/113 (41%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G + +MI P EA +S+ K AFDLV ++K G P L Y +
Sbjct: 315 GAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALIN 374
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G D+A + MGE G+ + S L+ K+D L ++
Sbjct: 375 SLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKM 427
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 17/156 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD ++ G + +A++L++D G+ + YN+L+ CK G
Sbjct: 758 LDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVR-GFCKLGR--------------- 800
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ ++ +MI + + P+ T++++ + + + A + M + G+ P +Y
Sbjct: 801 VEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLAYNF 860
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266
++G C G KA+E+ M GV P + +L
Sbjct: 861 LIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSL 896
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 17/166 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+CS G V EA + DD L++ Y+ LL+ CK G L+
Sbjct: 586 LCST-GRVCEAKKFIDDLHREHFKLNEMCYSALLH-GYCKEGR---------------LR 628
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ ++M+ VD + + + + ++D F L+K M + P Y +
Sbjct: 629 DALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMI 688
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
G+ K G+ KA+ + M + G P + L+ A +DK
Sbjct: 689 DGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDK 734
>gi|115455091|ref|NP_001051146.1| Os03g0728200 [Oryza sativa Japonica Group]
gi|50428716|gb|AAT77067.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108710874|gb|ABF98669.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113549617|dbj|BAF13060.1| Os03g0728200 [Oryza sativa Japonica Group]
Length = 601
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 17/169 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+K G V A +L ++ + + LS HY LLY C+ G L
Sbjct: 172 AKTGHVAVAEQLVEELQPR-LPLSLRHYTALLY-GWCRMGK---------------LDEA 214
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +M +V P+ F ++ VA E AF+L ++M+ G PP SY + G
Sbjct: 215 KHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQG 274
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G D+A V M G P+ L+ A ++ + YE L
Sbjct: 275 LGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFL 323
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
FE+ ++M PN ++T++ + A+ + A + +M+ G P +YG +
Sbjct: 249 AFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVT 308
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
FCK G + YE M G+ + +++++ E++ R+R
Sbjct: 309 AFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMR 362
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 94 SKKKARRESPEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC 151
+++ RR P + + M RG V EA+R++ + R G Y L+ C
Sbjct: 253 AREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLV-TAFC 311
Query: 152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
K G + +G+E M + + + + KE E +
Sbjct: 312 KAGR---------------ISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLE 356
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
L+++M+ PP L Y + CKLG T +A
Sbjct: 357 LMERMRECRCPPDLSIYNVVIRLACKLGETKQA 389
>gi|125544731|gb|EAY90870.1| hypothetical protein OsI_12477 [Oryza sativa Indica Group]
Length = 601
Score = 52.0 bits (123), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 17/169 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+K G V A +L ++ + + LS HY LLY C+ G L
Sbjct: 172 AKTGHVAVAEQLVEELQPR-LPLSLRHYTALLY-GWCRMGK---------------LDEA 214
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +M +V P+ F ++ VA E AF+L ++M+ G PP SY + G
Sbjct: 215 KHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQG 274
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G D+A V M G P+ L+ A ++ + YE L
Sbjct: 275 LGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFL 323
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
FE+ ++M PN ++T++ + A+ + A + +M+ G P +YG +
Sbjct: 249 AFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVT 308
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
FCK G + YE M G+ + +++++ E++ R+R
Sbjct: 309 AFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMR 362
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 94 SKKKARRESPEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC 151
+++ RR P + + M RG V EA+R++ + R G Y L+ C
Sbjct: 253 AREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLV-TAFC 311
Query: 152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
K G + +G+E M + + + + KE E +
Sbjct: 312 KAGR---------------ISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLE 356
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
L+++M+ PP L Y + CKLG T +A
Sbjct: 357 LMERMRECRCPPDLSIYNVVIRLACKLGETKQA 389
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G V +A+ S G + YN++L C +E E+ ++
Sbjct: 234 QEGRVDDAMEFLKSLPSYGCEPNTVSYNIVL---KGLCTAERWEDAEK------------ 278
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ +M PN TF + + E A +++ Q+ +G P SY P L F
Sbjct: 279 -LMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAF 337
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK D+A M SG P+ + LL +VD E+LH+L+
Sbjct: 338 CKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 389
Score = 42.0 bits (97), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ E+ +M+T + P+ T+++++ + E A +++ GI P Y
Sbjct: 414 EEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAI 473
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L G CK T A ++ +M +G +P E + L++
Sbjct: 474 LLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIE 510
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 85/212 (40%), Gaps = 20/212 (9%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
R +V AL L+ + +GI ++ Y VL+ C ++ + R+ L FE
Sbjct: 310 RQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTGQGLLPSTFE 369
Query: 177 -------------------IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
+F++M D P+ T+ ++ A +L +MK
Sbjct: 370 LSLVLKGLLNDRRWKDAVCLFEEM-ADSGLPDVFTYNNLIHWHCQAHKLREALNLFDRMK 428
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G+ P + +Y L G+CK G D+A ++ + M G P L++ + K D
Sbjct: 429 KAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFD 488
Query: 278 KVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309
Y +L ++ ++ T+ ++ + VD
Sbjct: 489 NAYALLDEMKQNGVSCNDYTYNVLINGICMVD 520
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 22/169 (13%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EAL L+D + G+ S + YN LL + CK G + +++ +M
Sbjct: 419 EALNLFDRMKKAGVKPSINTYNSLL-MGYCKKGC---------------MDEAVKLYSEM 462
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ PN T+ ++ R +AK+D + A+ L+ +MK G+ +Y + G C +
Sbjct: 463 PMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMV--- 519
Query: 242 DKAYEVDAHMG---ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
D+ EVD + G +P ++++ V A + + + ++R
Sbjct: 520 DRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMR 568
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 22/187 (11%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLL-------YVCSCKCGSES-----------S 158
+ D A L D+ + NG++ + + YNVL+ VC +S +
Sbjct: 484 KKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMT 543
Query: 159 ENGDRENDSNLGLK-RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
N G+ F ++QQM + PN T+TS +MA ++ ++
Sbjct: 544 YNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVR 603
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD---AK 274
G+ P + +Y + GFC+ GN A ++ + + G+ P ++L+ + K
Sbjct: 604 RRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMK 663
Query: 275 KVDKVYE 281
+V K YE
Sbjct: 664 EVSKFYE 670
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE 253
T++ R +++ A +L K+ GI P YG + G ++G T KAYE+ M
Sbjct: 301 TTLMRGYCLRQEVGNALNLFKETLKDGIVPTKVMYGVLIRGCDQVGMTQKAYELCRQMTG 360
Query: 254 SGVVPEEPELSALLK 268
G++P ELS +LK
Sbjct: 361 QGLLPSTFELSLVLK 375
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ FQQM++ P+ T+T+ + + + A D+V +MK G+ P L +Y +
Sbjct: 621 AYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIK 680
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
G+ LG T+ A+ V M ++G P + +L+K ++ K
Sbjct: 681 GYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMK 721
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ ++F +M D P T+T + + E A +LVK+M+ GI P + +Y
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTV 363
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ C +KA E+ M E G++P +AL+
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALI 400
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + ++M+ + P +T T + + D + A+ +QM S G P +Y
Sbjct: 583 LKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTT 642
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ +C+ G A ++ A M E+GV P+ S+L+K D + + + +L R+
Sbjct: 643 FIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTG 702
Query: 291 RQVSESTF-----KIIEDWFDSVDAAEIGV 315
+ S+ TF ++E + V E GV
Sbjct: 703 CEPSQHTFLSLIKHLLEMKYGKVKGGEPGV 732
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 54/201 (26%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLL-YVCS-CKCGSESSENGDRENDSNLGLKRGFEIFQ 179
EAL L + GI + H Y VL+ +CS CK L++ E+
Sbjct: 341 EALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCK------------------LEKARELLG 382
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL- 238
QM+ + PN T+ ++ + E A D+V+ M+S + P R+Y + G+CK
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN 442
Query: 239 ---------------------------------GNTDKAYEVDAHMGESGVVPEEPELSA 265
GN D AY + + M + G+VP+ ++
Sbjct: 443 VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTS 502
Query: 266 LLKLSVDAKKVDKVYEILHRL 286
++ +K+V++ ++ L
Sbjct: 503 MIDSLCKSKRVEEACDLFDSL 523
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 100/259 (38%), Gaps = 51/259 (19%)
Query: 64 LTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEA 123
L GLCT K++T+ E S + +L H+L K GD A
Sbjct: 573 LIHGLCTDGKLKEATLLEEKMVKIDLQPTVST--------DTILIHRL---LKDGDFDHA 621
Query: 124 LRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENG---DRENDSNLGL 171
R + S+G H Y + C+ G ++ ENG D S+L
Sbjct: 622 YRRFQQMLSSGTKPDAHTYTTFIQT-YCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIK 680
Query: 172 KRG--------FEIFQQMITDKVDPNEATFTSVARL--------------AVAKEDPEMA 209
G F + ++M +P++ TF S+ + V M
Sbjct: 681 GYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMME 740
Query: 210 FDLV----KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELS 264
FD+V ++M G+ P +SY + G C++GN A +V HM + G+ P E +
Sbjct: 741 FDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFN 800
Query: 265 ALLKLSVDAKKVDKVYEIL 283
ALL +K ++ +++
Sbjct: 801 ALLSCCCKLEKHNEAAKVV 819
>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Vitis vinifera]
Length = 450
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 58/116 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ +F +MI + V P+ AT+ + ++ K++ E A + ++M G P +Y
Sbjct: 250 VRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNV 309
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +G +KA E A M + P + +++ DA++++K + ++
Sbjct: 310 VIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIEKGLNVFEKM 365
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 16/160 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V +A R++++ G+ S YN + V C ++ EN +
Sbjct: 248 GEVRKAQRVFNEMIGEGVLPSVATYNAFIQVL---CKKDNVENA-------------ISV 291
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M+ PN T+ V R E A + + +MK P ++ Y + FC
Sbjct: 292 FEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCD 351
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+K V MG++ +P + L+ KK D
Sbjct: 352 AEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSD 391
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 61/145 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK +E F QM K + + T+T+V + A + +M G+ P + +Y
Sbjct: 215 LKEAWEFFLQMKKRKCEIDVVTYTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNA 274
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK N + A V M G +P + +++ +++K E + R++
Sbjct: 275 FIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDE 334
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGV 315
+ + + ++ +F + E G+
Sbjct: 335 CEPNVQIYNVVIRYFCDAEEIEKGL 359
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M+ PN TF ++ E +++ QM G P +R Y + G
Sbjct: 248 ELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI 307
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ A+E+ M G+ P + LLK A++ ++ E+L + + +
Sbjct: 308 CKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDD 367
Query: 296 STFKIIEDWF 305
TF I+ D+F
Sbjct: 368 VTFNILVDFF 377
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ QMI N TF ++ K E A +L+KQM G P L SY + G
Sbjct: 458 DLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 517
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G TD+A E+ M G+ P S++ +++KV ++ ++
Sbjct: 518 GKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQ 569
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 45/113 (39%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ M+ + PN ++S+A + + ++ I Y +
Sbjct: 526 ALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVIS 585
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G T++A E A+M SG VP E + L++ V + E+L L
Sbjct: 586 SLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTEL 638
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 80/187 (42%), Gaps = 18/187 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V EA +Y D GI + YN ++ + DR ND+ KR
Sbjct: 158 KEGKVSEAEEIYGDMLRRGIFPTTITYNSMI---------DGFCKQDRLNDA----KR-- 202
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ M + P+ TF+++ + + ++ +M GI +Y + GF
Sbjct: 203 -MLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGF 261
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT--LVRQV 293
C++G+ D A ++ M SGV P ++L K++ K + IL L+ + ++
Sbjct: 262 CQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCPRI 321
Query: 294 SESTFKI 300
++ FKI
Sbjct: 322 VQAKFKI 328
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ + MI +++P+ TF+++ V + A ++ M GI P +Y + GF
Sbjct: 132 QLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGF 191
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI---LHRLRTLVRQ 292
CK + A + M P+ S L+ AK+VD EI +HR +
Sbjct: 192 CKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANT 251
Query: 293 VSESTF 298
V+ +T
Sbjct: 252 VTYTTL 257
>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g25630-like [Glycine max]
Length = 632
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ EI+ M+ V P+ ++ +A+ V ++ E A +++ M G+ P + +
Sbjct: 369 LEKCKEIYNNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTT 428
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C +G D A V MGE GV P L+ +AK+ K +L +
Sbjct: 429 VISGWCSVGRMDNAMRVFDKMGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFH 488
Query: 291 RQVSESTFKII-EDW 304
Q +ST ++ E W
Sbjct: 489 VQPKKSTILLVAEAW 503
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 68/172 (39%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G V +A+ S+G + YN++L C +E E+ ++
Sbjct: 238 QEGRVDDAIEFLKSLPSHGCEPNTVSYNIVL---KGLCTAERWEDAEK------------ 282
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ +M PN TF + + E A +++ Q+ +G P SY P L F
Sbjct: 283 -LMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAF 341
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK D+A M G P+ + LL +VD E+LH+L+
Sbjct: 342 CKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLK 393
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K E+ +M+T + P+ T+++++ ++ E A +++ GI P Y
Sbjct: 418 KEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAI 477
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G CK T A ++ +M +G +P E + L++ V + E+L L
Sbjct: 478 LLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGEL 532
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
+ A ++DD G++L +NVL+ Y K L+ +
Sbjct: 185 IASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGK------------------LEDALGM 226
Query: 178 FQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++M+++ V+P+ T+ ++ + K DL+ MK G+ P +Y ++G+C
Sbjct: 227 LERMVSEFNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYC 286
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
KLG+ +A+++ M ++ ++P+ + L+ +A + + E++ +++L Q
Sbjct: 287 KLGSLKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVV 346
Query: 297 TFKIIED 303
T+ + D
Sbjct: 347 TYNTLID 353
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 17/181 (9%)
Query: 102 SPEGVLRHKLDMCS-KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP+ V H L K GD+ AL + + GI ++ N +L C +
Sbjct: 413 SPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTIL---DALCKERKVDE 469
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
DS KRG+ + +E T+ ++ +E E AF++ +MK
Sbjct: 470 AHNLLDS--AHKRGYIV-----------DEVTYGTLIMGYFREEKVEKAFEMWDEMKRIK 516
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I P + ++ + G C G T+ A E + ESG++P++ ++++ +V+K +
Sbjct: 517 ITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGRVEKAF 576
Query: 281 E 281
E
Sbjct: 577 E 577
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 31/240 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK-RGFE 176
G + E L L D +S + YN L+ C LGL +
Sbjct: 324 GSIREGLELMDVMKSLKLQPDVVTYNTLIDGCF-----------------ELGLSLEAKK 366
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGPALFGF 235
+ +QM D V PN+ T + +E E VK++ G P + +Y + +
Sbjct: 367 LMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAY 426
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL---HRLRTLVRQ 292
K+G+ A E+ MG+ G+ L+ +L +KVD+ + +L H+ +V +
Sbjct: 427 LKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDE 486
Query: 293 VSESTFKI-------IEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW 345
V+ T + +E F+ D + + V+ I GG HG+ L K+
Sbjct: 487 VTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLI--GGLCHHGKTELAMEKF 544
Score = 42.7 bits (99), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 16/150 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L SK+G + + L D + NG+ ++ YN L+Y CK GS
Sbjct: 247 LKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVY-GYCKLGS--------------- 290
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK F+I + M + P+ T+ + +L+ MKS + P + +Y
Sbjct: 291 LKEAFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNT 350
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
+ G +LG + +A ++ M GV P +
Sbjct: 351 LIDGCFELGLSLEAKKLMEQMENDGVKPNQ 380
>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
herrerae]
Length = 395
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL----- 169
+ GD+ E RL + ++G+ + Y+VL+ +C +++E D D L
Sbjct: 170 RLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 229
Query: 170 -------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
+ EI++QM++ + P+ T+ ++ K D + A DL+ +M
Sbjct: 230 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEM 289
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LS 270
G+ P +Y + G CK G+ + A+E M + + ++ +AL+ S
Sbjct: 290 SMKGLKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRS 349
Query: 271 VDAKKV 276
VDA+K+
Sbjct: 350 VDAEKM 355
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 76/170 (44%), Gaps = 17/170 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
KRG V +A L ++ NG + + + L++ CK G +R F
Sbjct: 326 KRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGL-CKKGWT---------------ERAF 369
Query: 176 EIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+F ++I +D PN T+T++ +E A L ++MK G+ P +Y + G
Sbjct: 370 RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 429
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
CK GN KAYE+ M G P ++++ + ++ +++L+
Sbjct: 430 HCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLN 479
>gi|167998422|ref|XP_001751917.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697015|gb|EDQ83352.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1216
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 33/244 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ GDV +A +Y + + + +N L+ C + G+
Sbjct: 666 IDGCARAGDVPKAFGIYKKMLNQEVEPDRVIFNTLITACG-RAGA--------------- 709
Query: 171 LKRGFEIFQQMITDKVDP---NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
R FE+ M D P + T+ ++ + E A ++ K+M+S +
Sbjct: 710 FLRAFEVLADM-RDAPQPIALDHITYGALIAACSRAGEVERALEVYKRMRSSKVSGTTEC 768
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
Y A+ G + A + M E GV P+E A++ ++ A K+D + IL ++
Sbjct: 769 YTAAVHACSHKGYLNIALSIYDDMREDGVQPDEVFFCAMMDVAGHAGKIDVAFAILQEMK 828
Query: 288 TLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG-------GGWHGQGWL 340
+ + S T+ + VD AE + +V E I G G Q W
Sbjct: 829 NIGTKPSPVTYNTLMVACSKVDDAE------NAMRVYEEIKALGLRPILFLLGLSSQRWS 882
Query: 341 GSGK 344
G+G+
Sbjct: 883 GAGR 886
>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
Length = 1139
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 19/199 (9%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
E +L H L KRG + +AL L+D R GI ++ + YN L+ CK GS
Sbjct: 373 EVTYAILIHAL---CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLIN-GYCKQGS----- 423
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
L R + M+ + + P A+++ + D +L ++M G
Sbjct: 424 ----------LDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERG 473
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I ++ + GFCK D+A + M +S V+P E + +++ + K +
Sbjct: 474 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 533
Query: 281 EILHRLRTLVRQVSESTFK 299
++ ++ + + T++
Sbjct: 534 QLYDQMVEMGLKPDNYTYR 552
Score = 45.1 bits (105), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+ V EA L G+ + YN L+ C +E ++ DR
Sbjct: 310 IDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALI---DKLCKNERFDDADR------- 359
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+F++M ++PNE T+ + + E A L +M+ GI + Y
Sbjct: 360 ------LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNS 413
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G+ D+A + + M + G+ P S L+
Sbjct: 414 LINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLI 450
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L +C K G V +A L++D + G Y+ L++ CS GS
Sbjct: 654 LGLC-KLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSAS-GS--------------- 696
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F + +M++ ++ PN T+ S+ + A L +++S GI P +Y
Sbjct: 697 IDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNT 756
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G CK GNT +A+++ M + G+ P
Sbjct: 757 LIDGHCKDGNTTEAFKLKQKMIKEGIQP 784
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 17/152 (11%)
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
CK G R NLG E+F IT L +AK+ ++
Sbjct: 491 CKLGDLGRATQIRIEMENLGFVPSVEMFNSFITG--------------LFIAKQSGKVN- 535
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
D+ +M + G+ P +YG + G+CK GN A + M E G+ P S L+
Sbjct: 536 DIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCF 595
Query: 271 VDAKKVDKVYEILHRL--RTLVRQVSESTFKI 300
KVD+ +L +L +++ S ST I
Sbjct: 596 YREGKVDEANLVLQKLADTDMIQDCSASTLNI 627
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 53/111 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+FQQM P++ T +A+ A D +K+M+ G+ L +Y + G+C
Sbjct: 151 VFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYC 210
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
++G T+ A ++ + G+ P + L+K ++++ +++ ++
Sbjct: 211 RIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIK 261
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K +V A+ L++ +S GI+ + YN L+ CK G+ + F
Sbjct: 728 KSCNVSRAVSLFNKLQSKGISPNAITYNTLID-GHCKDGNTT---------------EAF 771
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ Q+MI + + P T+T + + E A L+ QM + P +Y + G+
Sbjct: 772 KLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGY 831
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
+ GN ++ M G++P
Sbjct: 832 ARCGNMKAITKLYNEMHICGLLP 854
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
LD K V E +L++ R+ G + ++ L++ C+ G
Sbjct: 227 LDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGL-CRTGE--------------- 270
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ E+F M+ PN+ T+T++ E A +L ++M IPP +Y
Sbjct: 271 LEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 330
Query: 231 ALFGFCKLGNTDKAYEVDAHM-GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+CK G+ D+A ++ M G +G+ P + L+ K+ + E++ + T
Sbjct: 331 LIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 390
Query: 290 VRQVSESTFKII 301
T++I+
Sbjct: 391 GLAADSCTYRIL 402
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
+ N T++S+ + V + PE ++ ++++M + G P + ++ + GF + N +KA
Sbjct: 6 IAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAR 65
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
EV HM ESG P+ L+ K+D+ +IL +
Sbjct: 66 EVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEM 106
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPKLRSYGPALFG 234
E+F++M + P+ + S+ + + A L ++M G+ P + ++ + G
Sbjct: 311 ELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDG 370
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
FCKLG +A E+ A MG G+ + L+ A K+D+ E+ ++R
Sbjct: 371 FCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMR 423
Score = 46.2 bits (108), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 19/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL 169
L +C + G V +A + +G + YNVLL+ +CS +G E + L
Sbjct: 158 LGLC-QAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCS---------SGQLEQANTL 207
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
F +M + P+ T+ ++ E L + M++ G P + ++
Sbjct: 208 --------FAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFS 259
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C+ G +KA EV M E+G P + + L+ A+KV + E+ ++
Sbjct: 260 TLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKM 316
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 48/103 (46%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+++ ++M+ +P+ F V + + E A ++ + M G P SY + G
Sbjct: 30 YKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHG 89
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
K+G D++ ++ + M G P S+L++ A++VD
Sbjct: 90 LAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVD 132
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 25/186 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL----- 169
K GD+ E RL + +++G+ + Y+VL+ +C +++E D D+ L
Sbjct: 183 KLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGV 242
Query: 170 -------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
+ EI++QM++ + P+ T+ ++ K D + A DL+ +M
Sbjct: 243 TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 302
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LS 270
G+ P +Y + G CK G+ + A+E M + + ++ +AL+ S
Sbjct: 303 SMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRS 362
Query: 271 VDAKKV 276
VDA+K+
Sbjct: 363 VDAEKM 368
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 76/194 (39%), Gaps = 23/194 (11%)
Query: 100 RESPEGVLRHKLDMCSKRGDVFEALR-------LYDDARSNGITLSQHHYNVLLYVCSCK 152
R + E R D C K + L+ Y+++ G S + +N+L++
Sbjct: 90 RLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMH----- 144
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
S E R S +F + + P+ +F ++ + D + F L
Sbjct: 145 --SFVKEGEIRLAQS---------VFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRL 193
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
M++ G+ P + +Y + G CK D A E+ M ++G+VP + L+
Sbjct: 194 KNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCK 253
Query: 273 AKKVDKVYEILHRL 286
+VD EI ++
Sbjct: 254 NGRVDLAMEIYKQM 267
>gi|356498649|ref|XP_003518162.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g06400, mitochondrial-like [Glycine max]
Length = 1034
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
++G + EAL D + NGIT + H + L+ + +E +++
Sbjct: 869 RKGRLEEALAKVDVMKQNGITPTIHVFTSLIV------------HFFKEKQ----VEKAI 912
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E F++M+ +P T++++ R + P A+D+ +MK G P ++Y L
Sbjct: 913 ETFEEMLHSGYEPTIVTYSALIRGYMNVGRPIDAWDIFYRMKLKGPFPDFKTYSMFLTCL 972
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK+G +++ + + M +SG+VP
Sbjct: 973 CKVGKSEEGMRLISEMLDSGIVP 995
Score = 40.0 bits (92), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 79/207 (38%), Gaps = 20/207 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG--SESSENGDRENDSNL------ 169
G + EAL L + +S + L +Y L+ CK G +++ E D ++
Sbjct: 344 GSIEEALELIRELKSKDLDLEPENYETLVRGL-CKAGRITDALEIVDIMKRRDMVDGRVH 402
Query: 170 -----------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
+ R E+FQ M P +T+T + + E A L +M
Sbjct: 403 GIIINGYLGRNDVDRALEVFQCMKESGCVPTISTYTELMLHLFRLDRYEEACMLYDEMLG 462
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
GI P + + + G + A+++ M G+ P + +K A + D
Sbjct: 463 KGIKPDVVAITAMVAGHVSQNHISDAWKMFKSMECQGIKPTWKSFAVFIKELCKASQTDD 522
Query: 279 VYEILHRLRTLVRQVSESTFKIIEDWF 305
+ ++LH ++ ++ + ++ W
Sbjct: 523 IVKVLHEMQASKSRIQDKVLDLVITWM 549
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 78/197 (39%), Gaps = 21/197 (10%)
Query: 111 LDMCSKRG-DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
+ +C ++G V +AL++Y + S G + L C C+ G ++ N
Sbjct: 759 IALCGRKGRKVDDALKIYGEMISAGYVPDKELIETYLG-CLCEVGRVLDARRCTDSLQNF 817
Query: 170 G-------------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
G ++ + +++ +K ++ TF S+ + K E A
Sbjct: 818 GYTVPLSYSLFIRALCRAGKVEEALALHEEVGEEKFIIDQLTFGSIVHGLLRKGRLEEAL 877
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
V MK GI P + + + F K +KA E M SG P SAL++
Sbjct: 878 AKVDVMKQNGITPTIHVFTSLIVHFFKEKQVEKAIETFEEMLHSGYEPTIVTYSALIRGY 937
Query: 271 VDAKKVDKVYEILHRLR 287
++ + ++I +R++
Sbjct: 938 MNVGRPIDAWDIFYRMK 954
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ E++ +MI+ K+ PN ++ + AF L +M GI P L +
Sbjct: 481 MEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNT 540
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+C+ G+ KA E M GV P+ + L+ V + +DK + +++++ T
Sbjct: 541 VIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKG 600
Query: 291 RQVSESTFKIIEDWF 305
Q T+ +I + F
Sbjct: 601 LQPDVVTYNVILNGF 615
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 20/157 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G A ++++ S G++ YN LL V SC+ N++ L K
Sbjct: 267 KKGRYVRAKGVFNEMLSIGLSPDTTTYNTLL-VESCR------------NNNFLEAK--- 310
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+IF M+ V P+ +F+S+ ++ + A + MK+ G+ P Y + G+
Sbjct: 311 DIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGY 370
Query: 236 CKLGNTDKAYEVDAHMGESG----VVPEEPELSALLK 268
C+ G +A E+ M E G VV L+ L K
Sbjct: 371 CRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCK 407
>gi|147828617|emb|CAN73046.1| hypothetical protein VITISV_008668 [Vitis vinifera]
Length = 477
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 16/175 (9%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C G + ALR++ + + G + Y L+ C+ G +
Sbjct: 165 LCKNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGL-CRLGK---------------IG 208
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+F++M T P T+ S+ +D + A L+++M S GI P + +Y +
Sbjct: 209 EAKELFKEMETKACSPTVVTYXSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLM 268
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G CK G + +A E+ M +P S L+ K+ + EIL R++
Sbjct: 269 DGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMK 323
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 80/193 (41%), Gaps = 22/193 (11%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178
D+ A+RL ++ S GI + Y+ L+ CK G S R E+
Sbjct: 241 DLDSAIRLLEEMASKGIKPNVFTYSSLMDG-HCKSGCSS---------------RALELL 284
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
M++ + PN T++++ + + A +++ +MK G+ P YG + GFC +
Sbjct: 285 DMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAGLYGKIISGFCDI 344
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKL------SVDAKKVDKVYEILHRLRTLVRQ 292
+A M G+ P S +++ + + ++ +++ +RT
Sbjct: 345 CKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGIS 404
Query: 293 VSESTFKIIEDWF 305
+ TF + ++F
Sbjct: 405 IDAKTFDSLVNYF 417
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F++M + +P++ ++ +V + V + ++A + M+ GIPP + S + C
Sbjct: 107 VFRKMKEYECEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALC 166
Query: 237 K-LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
K G D A + M G P L+ K+ + E+ + T
Sbjct: 167 KNSGTMDAALRIFREMPNRGCPPHSYTYGTLIXGLCRLGKIGEAKELFKEMET 219
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 6/113 (5%)
Query: 178 FQQMITDKVDPNEATFTSVARL------AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+M+ + PN T++ R+ + E P AF L M++ GI +++
Sbjct: 354 LDEMVLGGISPNRLTWSLHVRIHNIVVQGLCTEHPNRAFQLYLSMRTRGISIDAKTFDSL 413
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ FC G+ KA + M G +P+E +A++ D +KV + E++
Sbjct: 414 VNYFCNKGDLHKAAHLVDEMVLDGCIPDEXTWNAVVCAFWDRRKVRESAELVQ 466
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGL 171
MC + GDV +AL L + S+G S +YN +L +CS +R D++
Sbjct: 87 MCGE-GDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS----------AERWGDAD--- 132
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
E+ +M+ + PNEATF V K + A L+++M G + +Y
Sbjct: 133 ----ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAI 188
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G C+ N D A + + M G P+ + LLK
Sbjct: 189 INGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 225
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + E+F +M +P++ + +A + E A V++++ GI P Y
Sbjct: 303 LDQALELFNEMGHKGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNA 361
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C+ G T+ A ++ A+M SG +P++ L++ +++ E+L +L
Sbjct: 362 ILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 417
Score = 44.3 bits (103), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG V +AL + DD G YN+LL +CK G ++
Sbjct: 19 ERGQVRDALSVLDDMLCRGCAPDVVTYNILLEA-TCK---------------GRGYRQAM 62
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ M + PN T+ + + D + A +L++ + S G P +Y L G
Sbjct: 63 ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C A E+ M P E + ++
Sbjct: 123 CSAERWGDADELVTEMLRENCPPNEATFNVVI 154
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C RG +A+ L D R+ G T + YNVL+ CG GD ++
Sbjct: 53 CKGRG-YRQAMELIDLMRAEGCTPNNVTYNVLM---DGMCGE-----GDVDD-------- 95
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ + + + P+ + +V + + E A +LV +M PP ++ ++
Sbjct: 96 ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 155
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
C+ G +A ++ M + G +A++ + + VD +L ++++
Sbjct: 156 SLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKS 210
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 17/148 (11%)
Query: 121 FEAL-RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
FE L R+Y++ SNG++ S + L+ C R+ D L R E+F
Sbjct: 163 FELLWRIYEEMISNGLSPSVITFGTLIDGCC------------RQGD----LLRAQEMFD 206
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M + P +T + R + E A + + M+ G+ P + +Y + G+CKL
Sbjct: 207 EMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLA 266
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
N +A + M G+VP+ L+
Sbjct: 267 NAKQALRLYQDMLGEGLVPDVVTFGILI 294
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K + +ALRLY D G+ + +L+ CK G
Sbjct: 259 MDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGL-CKFGE--------------- 302
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K +F MI V PN A + S+ D A L +++ F + P + +Y
Sbjct: 303 MKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSI 362
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C + T++A + M + G++ ++L+ K+DK EI ++
Sbjct: 363 LIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQM 418
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 30/256 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C ++GD+ A ++D+ R GI + Y +L+ S+N E +S
Sbjct: 189 IDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIR-------GLCSDNKIEEAES--- 238
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSV----ARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
+ + M V PN T+ ++ +LA AK+ A L + M G+ P +
Sbjct: 239 ------MHRAMREVGVYPNVYTYNTLMDGYCKLANAKQ----ALRLYQDMLGEGLVPDVV 288
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G + G CK G A + +M + V P ++L+ V + + L
Sbjct: 289 TFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLEL 348
Query: 287 RTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHG--QGWLGSGK 344
T+ I+ SV E N +EGI+ ++ G GK
Sbjct: 349 ERFEVSPDVFTYSILIRGLCSVSRTE-EAGNIFEKMTKEGILANSVTYNSLIDGCCKEGK 407
Query: 345 WRVER---TQIDENGV 357
+Q+ ENGV
Sbjct: 408 MDKALEICSQMTENGV 423
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 17/191 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA + + A++ G+ L Q Y++ +++ K S
Sbjct: 170 QEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNS----------------GYAL 213
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M P E TFTSV V + + A L M + G L + G+
Sbjct: 214 SLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGY 273
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL-VRQVS 294
C GN A + + ESG+VP + S L+ ++K +E ++T +R
Sbjct: 274 CMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSV 333
Query: 295 ESTFKIIEDWF 305
S I+E +
Sbjct: 334 YSLNSILEGYL 344
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 80/193 (41%), Gaps = 21/193 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSN 168
+D C K G++ +A Y + ++ GI S + N +L Y+ KC S
Sbjct: 305 IDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYL---KCQS------------- 348
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ F +F + + N TF ++ + A +L ++ + GI P + SY
Sbjct: 349 --WQNAFTMFNDALESGL-ANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSY 405
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G C+ N + A +V M ++G P + L+ ++ + I HR++
Sbjct: 406 NNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKD 465
Query: 289 LVRQVSESTFKII 301
+++T II
Sbjct: 466 ANILPTDTTLGII 478
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 76/191 (39%), Gaps = 19/191 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYN-VLLYVC-------SCKCGSESSENGDRENDS 167
K G + EA L+D+ + GI+ + YN ++L C +CK E +NG N
Sbjct: 379 KEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAV 438
Query: 168 NLGL------KRG-----FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
+ K+G F IF +M + P + T + + DL +
Sbjct: 439 TFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKF 498
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
S G P Y + GF K GN + A V M E G+ P ++L+ +
Sbjct: 499 VSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNI 558
Query: 277 DKVYEILHRLR 287
D ++L+ ++
Sbjct: 559 DLALKLLNDMK 569
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G FE L++ S G + YN ++ + +E + NL
Sbjct: 484 KAGRSFEGRDLFNKFVSQGFVPTCMPYNTII------------DGFIKEGNINLA----S 527
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++++M + P+ T+TS+ + ++A L+ MK G+ +++YG + GF
Sbjct: 528 NVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGF 587
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
CK + A+E+ + +G+ P ++++ K ++ V E + + +V +
Sbjct: 588 CKRRDMKSAHELLNELRGAGLSPNRFIYNSMI---TGFKNMNNVEEAIDLYKKMVNE 641
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K ++ AL+L +D + G+ + Y L+ + + D
Sbjct: 549 IDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLI------------DGFCKRRD---- 592
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K E+ ++ + PN + S+ + E A DL K+M + GIP L++Y
Sbjct: 593 MKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTS 652
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G K G A ++ M G++P++ + L+ + + + +IL +
Sbjct: 653 LIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDM 708
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
PN ++T + R A + A L++ M+S G+ + +YG + G C DKA E+
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 248 DAHMGESGVVPEEPELSALLK 268
M ESG+ P S+LL+
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQ 193
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 18/197 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G +A + D G+ + YNVL+ C CK GS
Sbjct: 227 IDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLIN-CMCKEGS--------------- 270
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVAR-LAVAKEDPEMAFDLVKQMKSFGI-PPKLRSY 228
+K + ++M V P+ T+ ++ + L+ E E + L + ++ I P + ++
Sbjct: 271 VKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTF 330
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G C +G +A++V A M E+G + + L+ + KV K E++ + +
Sbjct: 331 NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS 390
Query: 289 LVRQVSESTFKIIEDWF 305
L + T+ I+ F
Sbjct: 391 LGLEPDSFTYSILIKGF 407
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
DR D +GL R M + V + T+ ++ R + + A +L+ +M G
Sbjct: 127 ADRLADQAVGLLR------SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 180
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I P + Y L G+CK G + +V M E G+ P+ + L+ K K +
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240
Query: 281 EIL 283
++
Sbjct: 241 GVM 243
Score = 38.5 bits (88), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 176 EIFQQMITDKVDPNEATFT----SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++F +M ++P+ +T S+ ++ AK+ A ++ M G+ P + +Y
Sbjct: 206 KVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKK----AHGVMDMMVRRGLEPNVVTYNVL 261
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ CK G+ +A V M E GV P+ + L+K D ++D+ +L +
Sbjct: 262 INCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEM 316
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 16/199 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G V EA RL++ G H+ N ++Y + +G +E+
Sbjct: 199 IDGLGKKGQVDEAYRLFEKMLDAG-----HNANPVVYTSLIR---NFFIHGRKED----- 245
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
G +IF+++I P+ + + E + + ++S+G P +RSY
Sbjct: 246 ---GHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSI 302
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K G + + M + G + +A++ + KV K YEIL ++
Sbjct: 303 LIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC 362
Query: 291 RQVSESTFKIIEDWFDSVD 309
Q + +T+ I D +D
Sbjct: 363 VQPTVATYGAIVDGLAKID 381
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 19/196 (9%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+L H L +K G E ++ + G L YN ++ CK G
Sbjct: 302 ILIHGL---TKAGQARETSNIFHAMKQQGFALDARAYNAVV-DGFCKSGK---------- 347
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+ + +EI ++M V P AT+ ++ + + A+ L ++ KS GI +
Sbjct: 348 -----VHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNV 402
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
Y + GF K+G D+AY + M + G+ P ++LL V A+++++
Sbjct: 403 VLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQS 462
Query: 286 LRTLVRQVSESTFKII 301
++ + + T+ I+
Sbjct: 463 MKEMKCPPNTYTYSIL 478
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 68/168 (40%), Gaps = 18/168 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG-LKRGFEIFQQ 180
EA L+++A+S GI L+ Y+ L+ + +G + + I ++
Sbjct: 385 EAYMLFEEAKSKGIELNVVLYSSLI-----------------DGFGKVGRIDEAYLILEE 427
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+ + PN T+ S+ V E+ A + MK PP +Y + G C++
Sbjct: 428 MMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQK 487
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+KA+ M + G+VP + ++ + Y + R +
Sbjct: 488 YNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKA 535
Score = 42.7 bits (99), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + EA + ++ G+T + + +N LL ++ + N++
Sbjct: 409 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLL---------DALVKAEEINEA--- 456
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
FQ M K PN T++ + + AF + M+ G+ P + +Y
Sbjct: 457 ----LVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 512
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
+ G K+GN AY + +G +P+ +AL++ +A + + Y+
Sbjct: 513 MISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQ 563
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 6/157 (3%)
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
++ MK G R+Y + GFCK G KAYE+ M E V P A++
Sbjct: 318 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 377
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
++D+ Y + ++ +++ + + D F V + L + E +++
Sbjct: 378 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL------ILEEMMKK 431
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC 367
G + W V+ +I+E VC + + C
Sbjct: 432 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKC 468
>gi|357469235|ref|XP_003604902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505957|gb|AES87099.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 449
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G + ++M ++ P+ + V +L + D EM L+K M GI P L +Y +
Sbjct: 124 GLWVLRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGEKLMKDMSLNGICPDLITYMTMIE 183
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G C G ++AYE+ M +G P LSA+L +++ E+L +
Sbjct: 184 GLCSAGRLEEAYEMVKVMRGNGCSPNSVVLSAVLDGLCRLDSMERALELLDEM 236
>gi|222625312|gb|EEE59444.1| hypothetical protein OsJ_11623 [Oryza sativa Japonica Group]
Length = 589
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 17/169 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+K G V A +L ++ + + LS HY LLY C+ G L
Sbjct: 160 AKTGHVAVAEQLVEELQPR-LPLSLRHYTALLY-GWCRMGK---------------LDEA 202
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +M +V P+ F ++ VA E AF+L ++M+ G PP SY + G
Sbjct: 203 KHVLARMKAAEVAPDVVVFNTLLAGFVADGRFEDAFELAREMERRGCPPNAVSYTTLMQG 262
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
G D+A V M G P+ L+ A ++ + YE L
Sbjct: 263 LGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVTAFCKAGRISQGYEFL 311
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
FE+ ++M PN ++T++ + A+ + A + +M+ G P +YG +
Sbjct: 237 AFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLVT 296
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
FCK G + YE M G+ + +++++ E++ R+R
Sbjct: 297 AFCKAGRISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLELMERMR 350
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 59/153 (38%), Gaps = 18/153 (11%)
Query: 94 SKKKARRESPEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC 151
+++ RR P + + M RG V EA+R++ + R G Y L+ C
Sbjct: 241 AREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYGTLV-TAFC 299
Query: 152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
K G + +G+E M + + + + KE E +
Sbjct: 300 KAGR---------------ISQGYEFLDVMAREGLRVDAGVYLGFFVAHEKKEQLEECLE 344
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
L+++M+ PP L Y + CKLG T +A
Sbjct: 345 LMERMRECRCPPDLSIYNVVIRLACKLGETKQA 377
>gi|226505250|ref|NP_001147833.1| GTP binding protein [Zea mays]
gi|195614010|gb|ACG28835.1| GTP binding protein [Zea mays]
gi|413952711|gb|AFW85360.1| GTP binding protein [Zea mays]
Length = 547
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F++ +M KV PN T+ + + + E A+++ ++M G P+L +Y
Sbjct: 387 FQHAFKMVDEMRKCKVGPNSRTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLNTYTM 446
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ FC G D A +V MGE GV+P SAL+
Sbjct: 447 MVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALI 483
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 63/158 (39%), Gaps = 12/158 (7%)
Query: 139 QHHYNVLLYVCSCKCGSESSENGDRENDSNL-------GLKRGFEIFQQMITDKVDPNEA 191
QH + ++ + CK G S R D L + + IFQ+M D +P
Sbjct: 388 QHAFKMVDEMRKCKVGPNS-----RTYDVILHYLIKSQKFEEAYNIFQRMGIDGCEPQLN 442
Query: 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251
T+T + + + +MA + KQM G+ P + + + G C ++A M
Sbjct: 443 TYTMMVGMFCSNGRVDMALKVWKQMGEKGVLPCMHMFSALINGLCFENRLEEACVYFQEM 502
Query: 252 GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+ P S L + V ++ E+ +L +
Sbjct: 503 LDKGIRPPGQLFSNLKEALVQGGRISLAQEVALKLDAI 540
>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
Length = 544
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 21/243 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + EA R++ + + G+T NV Y + + + R
Sbjct: 262 RSGRLDEAERVFAEMQQAGVT-----PNVYTYTAVIDAMYRAGQ-----------VPRAQ 305
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ QMI PN ATF ++ R V E + QM+ G P + +Y +
Sbjct: 306 ELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETH 365
Query: 236 CKLG--NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C G N D A ++ M G +P+ + +LKL + V+ ++ R++ L +
Sbjct: 366 CGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKP 425
Query: 294 SESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHG--QGWLGSGKWRVERTQ 351
+ T+ ++ F+ + ++ VL +G+ + + + G G W+
Sbjct: 426 NVVTYNLLMRLFNLEKSMDM-VLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHMT 484
Query: 352 IDE 354
+ E
Sbjct: 485 LRE 487
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGL 171
MC + GDV +AL L + S+G S +YN +L +CS +R D++
Sbjct: 247 MCGE-GDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS----------AERWGDAD--- 292
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
E+ +M+ + PNEATF V K + A L+++M G + +Y
Sbjct: 293 ----ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAI 348
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G C+ N D A + + M G P+ + LLK
Sbjct: 349 INGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLK 385
Score = 44.7 bits (104), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG V +AL + DD G YN+LL +CK G ++
Sbjct: 179 ERGQVRDALSVLDDMLCRGCAPDVVTYNILLEA-TCK---------------GRGYRQAM 222
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ M + PN T+ + + D + A +L++ + S G P +Y L G
Sbjct: 223 ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 282
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C A E+ M P E + ++
Sbjct: 283 CSAERWGDADELVTEMLRENCPPNEATFNVVI 314
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + E+F +M +P++ + +A + E A V++++ GI P Y
Sbjct: 463 LDQALELFNEMGHKGFNPDK-IYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNA 521
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C+ G T+ A ++ A+M SG +P++ L++ +++ E+L +L
Sbjct: 522 ILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 577
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 17/175 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C RG +A+ L D R+ G T + YNVL+ CG GD ++
Sbjct: 213 CKGRG-YRQAMELIDLMRAEGCTPNNVTYNVLM---DGMCGE-----GDVDD-------- 255
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ + + + P+ + +V + + E A +LV +M PP ++ ++
Sbjct: 256 ALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIY 315
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
C+ G +A ++ M + G +A++ + + VD +L ++++
Sbjct: 316 SLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKS 370
>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
Length = 728
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK E+F+ MI D + PN T T + + AF + +++ FG+ P L +Y
Sbjct: 439 LKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPNLCTYRV 498
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK+ + + + A M + G VP+ S ++ V A + + + + +++
Sbjct: 499 IINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYYKM 554
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 77/183 (42%), Gaps = 21/183 (11%)
Query: 126 LYDDARSNGITLSQHHYNVLL--YVCSCK-CGSESSE-------NGDRENDSNLG----- 170
L+DD + +G + + + Y+VL+ Y K C E+ E G R N + G
Sbjct: 198 LFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYG 257
Query: 171 LKRGFEI-----FQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
L R ++ F QM+ + P N F +V A ++ MK G P
Sbjct: 258 LCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPD 317
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ SY + G CK G+ Y + M +G+ P S+LL A +V+ +E+
Sbjct: 318 VHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFK 377
Query: 285 RLR 287
RL+
Sbjct: 378 RLK 380
Score = 42.4 bits (98), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V +A+ ++D + G H Y++L+ + GD + G+ +
Sbjct: 297 GQVHKAVEVFDGMKKCGFVPDVHSYSILV--------DGLCKQGD--------VLTGYYM 340
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+M + + PN +++S+ E+AF+L K++K G Y L G C+
Sbjct: 341 LVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQ 400
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ + Y++ M VP+ S+L+ +++ + E+
Sbjct: 401 HLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQLKEALEVF 446
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE----------------- 164
+A L+D+ ++GI ++ Y LL+V S K + +++ ++
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALI 473
Query: 165 --NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ SN +K FE+ + M KV P+E TF ++ + + E A +L +MK GI
Sbjct: 474 DGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P S+ + G+ + G+ A+ V M ++G P +AL++ ++ D E+
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEEL 593
Query: 283 LHRL 286
L +
Sbjct: 594 LKEM 597
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGL 171
MC K+G + EA +++++ G+ S YN L+ C N NL +
Sbjct: 301 MC-KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFC---------------NKGNLDM 344
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ +M+ + P +T+ S+ ++ + A ++K+++ GI P +Y
Sbjct: 345 ASAYK--DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+C+ N KA+ + M SG+ P + ++LL
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL 438
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
L H L M +R D EA + + + GI+ YN+L+ C+C +
Sbjct: 367 LIHALFM-EQRTD--EAECMIKEIQEKGISPDAITYNILIN-GYCRCANA---------- 412
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
K+ F + +M+ + P + T+TS+ + K + A DL K++ S G+ P
Sbjct: 413 -----KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAI 467
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ + G C N A+E+ M V P+E + +++ KV++ E+ +
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527
Query: 287 R 287
+
Sbjct: 528 K 528
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK+ + M T V PN T+ ++ + E A ++ MK I P +YG
Sbjct: 237 LKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGS 296
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G CK G ++A ++ M + G+ P
Sbjct: 297 LISGMCKQGRLEEASKIFEEMVQKGLRP 324
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + EA + +A++ G+ L Y++++ K S ++ LGL R
Sbjct: 236 REGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAA----------LGLLR-- 283
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+M P+E FT V + + + A + +M S G P + + G+
Sbjct: 284 ----EMRDKGWVPHEVIFTRVIGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGY 339
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G+ D A E+ M E+G+ P + +++ +DK YEI ++++ + +S
Sbjct: 340 CKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKN--KDISP 397
Query: 296 STFKI 300
+ F +
Sbjct: 398 TVFNV 402
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 73/206 (35%), Gaps = 50/206 (24%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ AL L+D NGI + Y V++ C CK G+ + + +
Sbjct: 341 KQGDLDSALELFDKMNENGICPNNVTYAVIIEWC-CKNGN---------------MDKAY 384
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV---------------------- 213
EI+ QM + P S+ R + PE A L
Sbjct: 385 EIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWLC 444
Query: 214 ------------KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
++M G+ P + SY + G C+ G+ D A V M E G+ P
Sbjct: 445 KEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLI 504
Query: 262 ELSALLKLSVDAKKVDKVYEILHRLR 287
S L+ + + + R+R
Sbjct: 505 TYSVLMDGYFKKGDTEYAFGLYDRMR 530
Score = 47.0 bits (110), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND--------- 166
K+GD A LYD R I S N+++ CK G +SE+ DR
Sbjct: 515 KKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGL-CKAG-RTSESQDRLKKLVQEGFIPT 572
Query: 167 ------------SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
+ ++ +M V PN T+T++ + ++A ++
Sbjct: 573 CMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMD 632
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+MK+ GI + Y + GFC+ G+ A ++ + + E G+ P + S+++ +
Sbjct: 633 EMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMIS---GFR 689
Query: 275 KVDKVYEILHRLRTLVRQ 292
K+ + LH + ++ +
Sbjct: 690 KLQNMEAALHLHKRMINE 707
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA +++ G+ S YN ++ + C+ G S NG
Sbjct: 445 KEGKMSEACSIWEKMVRKGVRPSVVSYNNMI-LGHCQQGDMDSANG-------------- 489
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ + PN T++ + K D E AF L +M+ I P + + G
Sbjct: 490 -VFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGL 548
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
CK G T ++ + + + G +P
Sbjct: 549 CKAGRTSESQDRLKKLVQEGFIP 571
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
AL++ D+ ++ GI L Y C GD N S L ++
Sbjct: 627 ALKVMDEMKNKGIELDVTVY--------CALIDGFCRKGDMVNASQL--------LSELQ 670
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
+ PN+ ++S+ ++ E A L K+M + GIP L+ Y + G K G
Sbjct: 671 EVGLSPNKVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLL 730
Query: 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
A E+ A M G++P+ S L+ + +++ +IL +
Sbjct: 731 FASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDM 774
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC--------KCGSESSENGD 162
LD ++ G++FE ++Y ++ G + H Y V+ + S SE E G
Sbjct: 890 LDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAMLSEMEEAGF 949
Query: 163 REN----DSNLGL-------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ + +S L + ++ +++Q++ D ++P+E T+ ++ + PE F
Sbjct: 950 KPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFS 1009
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255
L+ +M+ G+ PKL +Y + F K ++A E+ + G
Sbjct: 1010 LMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSKG 1053
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 23/203 (11%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN----------GDRENDSNLGL 171
+A +L++D S G YN LLY + + E + G E N +
Sbjct: 379 KAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMI 438
Query: 172 ----KRG-----FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
K+G ++++ M + +P+ T+T + A ++ +M + G+
Sbjct: 439 HMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVK 498
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV---DAKKVDKV 279
P L++Y + G+ K G +A E M SG+ P+ S +L + + + K+ +
Sbjct: 499 PTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMTL 558
Query: 280 Y-EILHRLRTLVRQVSESTFKII 301
Y E+LH TL + E + +
Sbjct: 559 YKEMLHDGITLDHSLYELMLRTL 581
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 46/113 (40%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G+E+ M+ + N T++ + E L+K MK G+ P Y P +
Sbjct: 285 GYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIA 344
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G D A EV M G VP+ + +L K+ D+ I +L
Sbjct: 345 ALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALSIFEKL 397
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 52/113 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E Q++ + P T+T + + + + A L+ +M + P + +Y
Sbjct: 177 LDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNS 236
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G C+ G D+A+++ + + G P+ + LL+ ++ K + YE++
Sbjct: 237 IIRGMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELM 289
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSV----ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
R + +M+ VDP+ T+ S+ R + E E+ D+ +M+S P + SY
Sbjct: 424 RALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDM--EMESSECKPSVVSY 481
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L G CK+ A EV A M + G P E + L++
Sbjct: 482 NIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLIE 521
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F +MI PN T++ V + + A L+ +M S G P L +Y P
Sbjct: 218 LADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTP 277
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GF G D A + M G +P+ + ++ +VD +EI L
Sbjct: 278 LVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 333
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C++ G + EA +L D+ + + YN L + C S+ SE
Sbjct: 323 LCNE-GRIEEAFKLRDEMENLKLLPDVVSYNTL--INGCLEWSKISE------------- 366
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
F++ ++M V PN T + + + + A + + +M+ G P +Y +
Sbjct: 367 -AFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLI 425
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G+CK GN +A+ MG + + L+ +L+ KK+++ Y++L R
Sbjct: 426 NGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYF 485
Query: 293 VSESTF-KIIEDWFD--SVDAAEIGVLNWDVSKVREGI 327
+ E ++ +I +F +VD A + WD K +E I
Sbjct: 486 IDEVSYGTLIVGYFKDGNVDRA---LKLWDEMKEKEII 520
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 102 SPEGVLRHK-LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP+ V + LD K+G + +A L D +S G+ +++ YN+L+Y CK G
Sbjct: 240 SPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVY-GYCKMG------ 292
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
LK + + M + + P+ T+ + + E AF L +M++
Sbjct: 293 ---------WLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLK 343
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ P + SY + G + +A+++ M E GV P + ++K K+D
Sbjct: 344 LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMD 400
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 96/244 (39%), Gaps = 28/244 (11%)
Query: 31 QSNCHTYRSLLCWH-----MHSFTKPITDIKQNRFSAD-LTTGLCTLAFSKKSTVNESSA 84
+ N T+ ++ W+ M + IT ++++ FS D +T + K + E+
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439
Query: 85 PNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNV 144
TM +K + +S L L + + EA +L AR G + + Y
Sbjct: 440 ----TMDEMGRKNMKMDSV--TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGT 493
Query: 145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE 204
L+ G N DR +++ +M ++ P+ T+ +
Sbjct: 494 LI------VGYFKDGNVDR----------ALKLWDEMKEKEIIPSTVTYNCIIGGLCQCG 537
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
E A + ++ G+ P +Y L G+C+ G+ +KA++ M E+ P+ +
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597
Query: 265 ALLK 268
LL+
Sbjct: 598 ILLR 601
Score = 42.4 bits (98), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
++DA GI + + +N+++Y EN K E M
Sbjct: 196 FNDAIKLGIVPNVNTFNIVIY-------GYCLENK---------FKDAVEFLNVMGKYNC 239
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
P+ T+ ++ K A DL+ MKS G+ P +Y ++G+CK+G +A
Sbjct: 240 SPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAAN 299
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI---LHRLRTLVRQVSESTF 298
V M ++ ++P+ + L+ + ++++ +++ + L+ L VS +T
Sbjct: 300 VIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTL 354
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E + M++ P+ T+ ++ + A +++ Q+ S G P L +Y
Sbjct: 399 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNT 458
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K+G T+ A E+ M G+ P+ S LL+ KVD+ +I H + L
Sbjct: 459 VIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLS 518
Query: 291 RQVSESTFKII 301
+ S T+ I
Sbjct: 519 IKPSAVTYNAI 529
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 79/222 (35%), Gaps = 22/222 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C+ G V +A++L D+ R G YNVL+ CK G N + G K
Sbjct: 254 CNDSG-VGQAMKLLDEMRKKGCKPDVVTYNVLINGI-CKEGRLDEAIKFLNNMPSYGCKP 311
Query: 174 GF--------------------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
+ M+ P+ TF + K A D++
Sbjct: 312 NVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVL 371
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
++M G P SY P L GFC+ D+A E M G P+ + LL
Sbjct: 372 EKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 431
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGV 315
KVD EIL++L + T+ + D V E V
Sbjct: 432 GKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAV 473
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ G + ++MI P+ TS+ R + A +++ +++ G P + +Y
Sbjct: 122 LEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNV 181
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+ G+CK G DKA EV M V P+ + +L+ D+ K+ + E+L R
Sbjct: 182 LIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDR 233
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E+ ++M + P+ T++++ R + + A + M+ I P +Y +
Sbjct: 472 AVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIML 531
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G CK T +A + A+M E G P E + L++
Sbjct: 532 GLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIE 566
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N + I MI V PN + S+ + E AF LV++MKS G+ + +
Sbjct: 488 NGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFT 547
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y L G CK D+A E+ ++ G+ P+ + ++ + D+ E+L +
Sbjct: 548 YNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEM 606
Score = 46.2 bits (108), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 76/177 (42%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
D ++ GD L L+ ++ G+ + + ++LL CK G
Sbjct: 307 FDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGL-CKDGK--------------- 350
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + ++ + ++ + P A + ++ D + AF + +QMKS I P +Y
Sbjct: 351 VAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNA 410
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK+ +A ++ M +SGV P + L+ A +++K + +L ++
Sbjct: 411 LINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQ 467
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ F IF+QM + + P+ T+ ++ E A DLV +M+ G+ P + ++
Sbjct: 386 LQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNT 445
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ + + G +K + V + M + G+ +++K K+ + IL
Sbjct: 446 LIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAIL 498
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 16/148 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + G +A L + +S+G++ S YN+LL CK N
Sbjct: 517 IDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGL-CK---------------NSQ 560
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ E+ + + P+ ++ ++ K D + A +L+++M + I P LR+Y P
Sbjct: 561 IDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHP 620
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
L G + HM V P
Sbjct: 621 LLSALGSAGRVHDMECLYQHMVHKNVEP 648
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ +M VDP+ TF ++ E F ++ M+ GI + S+G + F
Sbjct: 426 DLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAF 485
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G +A + M VVP ++++ +++ ++ + ++ ++++ S
Sbjct: 486 CKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASI 545
Query: 296 STFKIIEDWF---DSVDAAEIGVLNWDVSKVREGIV 328
T+ ++ +D AE + N +R +V
Sbjct: 546 FTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVV 581
>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
Length = 1003
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 19/199 (9%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
E +L H L KRG + +AL L+D R GI ++ + YN L+ CK GS
Sbjct: 373 EVTYAILIHAL---CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLIN-GYCKQGS----- 423
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
L R + M+ + + P A+++ + D +L ++M G
Sbjct: 424 ----------LDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERG 473
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I ++ + GFCK D+A + M +S V+P E + +++ + K +
Sbjct: 474 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 533
Query: 281 EILHRLRTLVRQVSESTFK 299
++ ++ + + T++
Sbjct: 534 QLYDQMVEMGLKPDNYTYR 552
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+ V EA L G+ + YN L+ C +E ++ DR
Sbjct: 310 IDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALI---DKLCKNERFDDADR------- 359
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+F++M ++PNE T+ + + E A L +M+ GI + Y
Sbjct: 360 ------LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNS 413
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G+ D+A + + M + G+ P S L+
Sbjct: 414 LINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLI 450
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPA 231
R E+ +QM PN T+ +V ++ + A D++++M+ G I P +YG
Sbjct: 132 RALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTV 187
Query: 232 LFGFCKLGNTDKAYEV-DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK+G D+A +V D + + V PE +AL+ D K+D +L+R R +
Sbjct: 188 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA--LLYRDRMVE 245
Query: 291 RQVS 294
R V+
Sbjct: 246 RGVA 249
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK+G V E +L+D+A GI YN L+ + S +G+ + R
Sbjct: 333 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALI--------NSHSTSGN--------IDRA 376
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FEI +M ++ P++ T+ ++ R + A L+ +M GI P L +Y + G
Sbjct: 377 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISG 436
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ A + M G P +AL++
Sbjct: 437 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 470
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G+V +AL ++++ G+ + Y L+Y S K + ++
Sbjct: 299 KEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETD---------------- 342
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F + + + P+ + ++ + + AF+++ +M+ I P +Y + G
Sbjct: 343 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 402
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
C LG D+A ++ M E G+ P+
Sbjct: 403 CLLGRVDEARKLIDEMTERGIQPD 426
Score = 39.3 bits (90), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 16/165 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA L ++ G+ YN+L+ CK G+ +K+ EIF+ M
Sbjct: 270 EAYELVEEMGGKGLAPDVFTYNILIN-GHCKEGN---------------VKKALEIFENM 313
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
V T+T++ K + L + GI P L Y + GN
Sbjct: 314 SRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 373
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+A+E+ M + + P++ + L++ +VD+ +++ +
Sbjct: 374 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 418
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 16/174 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK+G V +AL+L D +G + YN L+ CK G S NG
Sbjct: 402 SKQGLVLQALQLMKDMMEHGCSPDIWTYN-LVVNGLCKMGCLSDANG------------- 447
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I I P+ TF ++ + + + A +++ M S GI P + +Y L G
Sbjct: 448 --ILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNG 505
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
CK D + M E G P + L++ +KV + E+ ++T
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT 559
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+ ++ +A+ + D S+GIT YN LL + C + +N
Sbjct: 468 IDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL---NGLCKARKLDN---------- 514
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F+ M+ PN T+ + A +L K+MK+ G+ P + +
Sbjct: 515 ---VVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCT 571
Query: 231 ALFGFCKLGNTDKAYEV 247
+ G C G DKAYE+
Sbjct: 572 LICGLCSNGELDKAYEL 588
Score = 39.7 bits (91), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
EA L+D+ GI +N L++V K + SE ++F +
Sbjct: 198 IEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESE----------------KLFSK 241
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
++ V PN TF + K + A L++ + S G+ P + SY + GFCK
Sbjct: 242 VMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK 301
Query: 241 TDKAYEVDAHMGESGVVPEE 260
+A M SGV P E
Sbjct: 302 LVEAECYLHKMVNSGVEPNE 321
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 169 LGLKRGFE----IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
LG +RGF+ + Q+M V PN T+T+ + ++ A+ ++M GI P
Sbjct: 319 LGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPD 378
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ +Y + GFCK D A ++ +M +SG+ P + L+ KV+ + E+LH
Sbjct: 379 MVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLH 438
Query: 285 RLRTLVRQVSEST 297
+ + RQ +T
Sbjct: 439 TMVSRGRQPDVAT 451
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 16/169 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V +A L+ GIT S Y L+ V C E++ +
Sbjct: 113 KNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETA----------------Y 156
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ Q M + K P ++ S+ + A+ L ++MK G P +Y + G
Sbjct: 157 GLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGL 216
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
C +A ++ M E+G P++ +AL++ ++ + + +
Sbjct: 217 CVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQ 265
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ +D PN T+T + +E A L+ +MK G+ P +Y
Sbjct: 350 EKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTC 409
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+ G CK GN +AYE+ MG+ G P +A++ + + Y++L R
Sbjct: 410 LIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRR 464
Score = 45.8 bits (107), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL-VKQMKSFGIPPKLRSYG 229
+K+ FE+ ++M+ PN T T++ K E AF L +K ++S P + +Y
Sbjct: 314 IKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYT 373
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+CK ++A + M E G+VP + L+ A + YE++
Sbjct: 374 CMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELM 427
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 16/160 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ A +++D G+ S YN + V C ++ +N I
Sbjct: 289 GEIKRARKVFDTMVKKGVLPSVATYNAFIQVL---CKKDNVDNA-------------IVI 332
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M+ PN T+ V R + + E A + + +MK G P +++Y + FC
Sbjct: 333 FEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCD 392
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
G DKA ++ M +P + L+ KK D
Sbjct: 393 EGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSD 432
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR ++F M+ V P+ AT+ + ++ K++ + A + ++M G P +Y
Sbjct: 291 IKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNL 350
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C G ++A E M + G P + +++ D ++DK ++ ++
Sbjct: 351 VIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKM 406
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F+ MI+ PN T+ + + P+ A +L ++M G P +Y L+GF
Sbjct: 573 ELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGF 632
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
C +G ++A EV M G P+ + LLK
Sbjct: 633 CNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLK 665
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++++M+ P+ T++++ + A +L + M S G P +Y L G C
Sbjct: 539 VYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLC 598
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K D+A+E+ M E G P+ + LL + K+++ E+ +
Sbjct: 599 KESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEM 648
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPA 231
R E+ +QM PN T+ +V ++ + A D++++M+ G I P +YG
Sbjct: 172 RALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTV 227
Query: 232 LFGFCKLGNTDKAYEV-DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G+CK+G D+A +V D + + V PE +AL+ D K+D +L+R R +
Sbjct: 228 ISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTA--LLYRDRMVE 285
Query: 291 RQVS 294
R V+
Sbjct: 286 RGVA 289
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK+G V E +L+D+A GI YN L+ + S +G+ + R
Sbjct: 373 SKKGQVQETDKLFDEAVRRGIRPDLVLYNALI--------NSHSTSGN--------IDRA 416
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
FEI +M ++ P++ T+ ++ R + A L+ +M GI P L +Y + G
Sbjct: 417 FEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISG 476
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ A + M G P +AL++
Sbjct: 477 YSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQ 510
Score = 43.5 bits (101), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 16/165 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA L ++ G+ L YN+L+ CK G+ +K+ EIF+ M
Sbjct: 310 EAYELVEEMGGKGLALDVFTYNILIN-GHCKEGN---------------VKKALEIFENM 353
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
V T+TS+ K + L + GI P L Y + GN
Sbjct: 354 SRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNI 413
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+A+E+ M + + P++ + L++ +VD+ +++ +
Sbjct: 414 DRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEM 458
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G+V +AL ++++ G+ + Y L+Y S K + ++
Sbjct: 339 KEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETD---------------- 382
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F + + + P+ + ++ + + AF+++ +M+ I P +Y + G
Sbjct: 383 KLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGL 442
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
C LG D+A ++ M + G+ P+
Sbjct: 443 CLLGRVDEARKLIDEMTKRGIQPD 466
>gi|115481316|ref|NP_001064251.1| Os10g0181200 [Oryza sativa Japonica Group]
gi|113638860|dbj|BAF26165.1| Os10g0181200, partial [Oryza sativa Japonica Group]
Length = 1021
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G V +A Y S + + +N L+ C E+G
Sbjct: 470 IDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG--------ESG--------A 513
Query: 171 LKRGFEIFQQMITDKVD--------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ R F++ +M + + P+ T ++ + + + A ++ K ++ + I
Sbjct: 514 VARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIK 573
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
Y AL G+ A ++ M + GV P+E LSAL+ ++ A++ D +EI
Sbjct: 574 GTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEI 633
Query: 283 LHRLRTLVRQV 293
+ R QV
Sbjct: 634 MKDARAKGYQV 644
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L +C+ D AL++ + G+ Y L+ C+ KCG
Sbjct: 400 LSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCA-KCGK--------------- 443
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F +M++ ++PN T++++ AF M S + P R
Sbjct: 444 VDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPD-RVVFN 502
Query: 231 ALFGFC-KLGNTDKAYEVDAHM--------GESGVVPEEPELSALLKLSVDAKKVDKVYE 281
AL C + G +A++V + M G ++P+ + AL+K + A + D+ E
Sbjct: 503 ALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRARE 562
Query: 282 ILHRLR 287
+ L+
Sbjct: 563 VYKMLQ 568
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L E+F +MI PN T++ V + + A L+ +M S G P L +Y P
Sbjct: 168 LADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTP 227
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GF G D A + M G +P+ + ++ +VD +EI L
Sbjct: 228 LVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 283
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ EA+ L++ N + YN+L+ C E ++G +
Sbjct: 149 KLGNMDEAVVLFNQMLENSCSPDVFTYNILI---DGYCKQERPQDGAK------------ 193
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ Q+M+ +PN T+ ++ V AF+L + M P ++ + F
Sbjct: 194 -LLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMF 252
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK+G D AYE+ M + G +P+ + ++ + A ++D ++L R+
Sbjct: 253 CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERM 303
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + Q M+ P+ TF + + ++A++L + M G P + +Y +
Sbjct: 226 AFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMIS 285
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G C+ D A ++ M E+G P+ ++++ A +VD+ YE+ LR
Sbjct: 286 GACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR 339
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +E+FQ M P+ T+ + A + A L+++M G PP + +Y
Sbjct: 258 LDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNS 317
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK D+AYEV + G + S L+ ++++D ++L +
Sbjct: 318 IVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 373
>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
Length = 586
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 22/223 (9%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESS----------ENGDRENDSNLG----- 170
L+D+ G+ L H YN L+ C+ G +S +G N + G
Sbjct: 253 LFDEMVERGVELDVHVYNALIDAL-CRGGDITSAQEQLSNMQKSHGLVPNAATYGPFLHA 311
Query: 171 ------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224
++ + +M T + PN T+ +V RL + A++++ ++ + G P
Sbjct: 312 ACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGEKPD 371
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ SY L CKL +KA + + M + P+ + LLK+ + + D E+
Sbjct: 372 VWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLIGVGRFDTAIEVWD 431
Query: 285 RLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
+ +T+ ++ S ++ V V EGI
Sbjct: 432 GMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGI 474
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 60/132 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F ++QQM + PN T+TS ++A ++ ++ G+ P + +Y ++
Sbjct: 545 AFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIY 604
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
GFC+ GN A +V M + G++P ++ + + K +++ ++ +
Sbjct: 605 GFCQEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDL 664
Query: 294 SESTFKIIEDWF 305
+T+ + D F
Sbjct: 665 DTATYTTLIDGF 676
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 83/193 (43%), Gaps = 21/193 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE--------- 164
C +R +V +AL ++++ +G+ + Y VL+ C+ + E + R+
Sbjct: 293 CLQR-EVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPS 351
Query: 165 -NDSNL---GL------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
N+ N+ GL K +F++M D P+ T+ + + A +L +
Sbjct: 352 TNEFNMVIKGLLNDKLWKDAVSLFKEM-ADSGIPDAFTYNILIHWLCQRRKIREALNLWE 410
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+M G+ P + +Y L +C G D+A ++ M G P + L+K ++
Sbjct: 411 KMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKA 470
Query: 275 KVDKVYEILHRLR 287
DK Y +L ++
Sbjct: 471 AFDKAYALLAEMK 483
Score = 42.4 bits (98), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D+ K G + EAL + D+ + G +S L++ + RE
Sbjct: 254 VDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQ----------RE------ 297
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ +IF++ + D + P + T+T + R + PE A++L +QM+ G+ P +
Sbjct: 298 VRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNM 357
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGV 256
+ G A + M +SG+
Sbjct: 358 VIKGLLNDKLWKDAVSLFKEMADSGI 383
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 76/185 (41%), Gaps = 20/185 (10%)
Query: 103 PEGVLRHKLDMC-SKRGDVFEALRLYDDARSNGIT--------LSQHHYNVLLYVCSCKC 153
P V H L +C G + EA++LY + G T L + H N + +
Sbjct: 419 PYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYAL 478
Query: 154 GSESSENGDRENDSNLG-LKRGF----------EIFQQMITDKVDPNEATFTSVARLAVA 202
+E +NG ND L G E+ ++ T+ P T+ S+ +
Sbjct: 479 LAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIK 538
Query: 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262
AF + +QM + GIPP + +Y + G+CK D A ++ + G+ P+
Sbjct: 539 AGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAA 598
Query: 263 LSALL 267
++L+
Sbjct: 599 YNSLI 603
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 16/148 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EALR Y+ GI L Y L+ + ++ + LK ++ +M
Sbjct: 649 EALRFYEKMIKEGIDLDTATYTTLI------------DGFSKDGNVTFALK----LYSEM 692
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ P+ TFT++ D + A L+ +M I P + Y + G+ + G
Sbjct: 693 VAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKL 752
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKL 269
+A+ + M E ++P++ L+ +
Sbjct: 753 QEAFRLHDEMLERKIMPDDTTYDILVGM 780
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/174 (18%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C +R + EAL L++ G+ Y+ LL +C C G +
Sbjct: 396 LCQRR-KIREALNLWEKMNETGVKPYIVTYHSLL-LCYCVNGC---------------MD 438
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+++ +M PN T+T++ + + K + A+ L+ +MK G+ +Y +
Sbjct: 439 EAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLI 498
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G C +G + E+ G VP ++++ + A + + + ++
Sbjct: 499 NGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQM 552
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 59/131 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E + M++ P+ T+ ++ + A +++ Q+ S G P L +Y
Sbjct: 400 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNT 459
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K+G T+ A E+ M G+ P+ S LL+ KVD+ +I H + L
Sbjct: 460 VIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLS 519
Query: 291 RQVSESTFKII 301
+ S T+ I
Sbjct: 520 IKPSAVTYNAI 530
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ M+ P+ TF + K A D++++M G P SY P L GFC
Sbjct: 336 LLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFC 395
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ D+A E M G P+ + LL K D EIL++L
Sbjct: 396 QEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQL 445
Score = 43.5 bits (101), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ G + ++MI P+ TS+ R A +++ +++ G P + +Y
Sbjct: 123 LEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNV 182
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+ G+CK G DKA +V M V P+ + +L+ D+ K+ + E+L R
Sbjct: 183 LIGGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDR 234
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 43/93 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++M + P+ T++++ R + + A + M+ I P +Y + G
Sbjct: 475 ELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGL 534
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
CK T +A + A+M E G P + + L++
Sbjct: 535 CKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567
>gi|297817780|ref|XP_002876773.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322611|gb|EFH53032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 79/176 (44%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GD+ + LY++ R ++L+ Y L+ CK G
Sbjct: 205 IDGYCKAGDLEVVVSLYEEMRRVRMSLNVVTYTALIDG-FCKKGE--------------- 248
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R ++ +M+ D+V+PN +T++ + D + A + +M + G+ + +YG
Sbjct: 249 MQRAGGMYLRMLEDRVEPNSLVYTTIINGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGV 308
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C +G +A E+ M + +VP+ + ++ + ++ + H+L
Sbjct: 309 IISGLCGIGKLKEATEIVEDMEKGDLVPDMMIFTTMMNAYFKSGRMKAAVNMYHKL 364
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 70/174 (40%), Gaps = 16/174 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK+G V +AL+L D +G + YN L+ CK G S NG
Sbjct: 402 SKQGLVLQALQLMKDMMEHGCSPDIWTYN-LVVNGLCKMGCLSDANG------------- 447
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I I P+ TF ++ + + + A +++ M S GI P + +Y L G
Sbjct: 448 --ILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNG 505
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
CK D + M E G P + L++ +KV + E+ ++T
Sbjct: 506 LCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKT 559
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+ ++ +A+ + D S+GIT YN LL + C + +N
Sbjct: 468 IDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLL---NGLCKARKLDN---------- 514
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F+ M+ PN T+ + A +L K+MK+ G+ P + +
Sbjct: 515 ---VVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCT 571
Query: 231 ALFGFCKLGNTDKAYEV 247
+ G C G DKAYE+
Sbjct: 572 LICGLCSNGELDKAYEL 588
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 121 FEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
EA L+D+ GI +N L++V K + SE ++F +
Sbjct: 198 IEAYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESE----------------KLFSK 241
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
++ V PN TF + K + A L++ + S G+ P + SY + GFCK
Sbjct: 242 VMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK 301
Query: 241 TDKAYEVDAHMGESGVVPEE 260
+A M SGV P E
Sbjct: 302 LVEAECYLHKMVNSGVEPNE 321
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 19/171 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G E L D+ G+ +S + + VL+ +NG L E+
Sbjct: 234 GKFLEGFGLVDEMIRRGLDVSVYVFTVLI--------DGLCKNG--------MLVEAREM 277
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M+ +PN T T++ K + +MA +L + +G + +Y + G+CK
Sbjct: 278 FDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCK 337
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI---LHR 285
+G A V M GVVP ++L+ A +V +EI +HR
Sbjct: 338 VGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHR 388
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 18/179 (10%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
+G+V A L+D G YNV ++ CK G ++
Sbjct: 303 KGNVDMARELFDAIGEWGFKRDVWTYNVFIHG-YCKVGR---------------VRDAVR 346
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M + V PN T+ S+ + A+++VK M G+ P + + L G C
Sbjct: 347 VFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLC 406
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH--RLRTLVRQV 293
K D+A + + ESG+ P+ + L+ ++++ + +L L+ LV +
Sbjct: 407 KSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHI 465
>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+ A +++D+ R + YN LL CK G S +++
Sbjct: 227 GESVSACKVFDEMREQQCAVDVLAYNSLLEA-FCKGGKVSE---------------AYKM 270
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M ++ + P+ TF+ R D +A+ ++ +MK + + P + +Y + CK
Sbjct: 271 FREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRVLDEMKRYDLVPNVFTYNCMIKKLCK 330
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++AY++ + E P+ +A+L + +V+ ++ R+
Sbjct: 331 KEKVEEAYQLLNEIIERSGQPDAWSYNAILAYHCEHSEVNSATRLISRM 379
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 16/172 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L+ K G V EA +++ + SNGI +++ + C + ND +L
Sbjct: 255 LEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFI---RAYCEA---------NDIHLA 302
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + +M + PN T+ + + KE E A+ L+ ++ P SY
Sbjct: 303 ----YRVLDEMKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSGQPDAWSYNA 358
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
L C+ + A + + M + +P++ + LLKL + + D+ E+
Sbjct: 359 ILAYHCEHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEV 410
>gi|298204688|emb|CBI25186.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 75/209 (35%), Gaps = 51/209 (24%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV-------------------------- 148
SK G++F++LRL+DD + G YN L+YV
Sbjct: 293 SKFGNLFDSLRLFDDMKKRGWIPGLEVYNSLIYVLTHENCLTEALKILGKIKEMGLQLDS 352
Query: 149 ----------CSCKCGSESSENGDRENDSNLG--------------LKRGFEIFQQMITD 184
C K E+ NLG + FE+ + + T
Sbjct: 353 ASYNCMIRPLCKAKKLEEARTILAAMIGENLGPTTETYHAFLEGASYEETFEVLKNLRTA 412
Query: 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
PN TF + + PE A + +MK F + P Y + G K G KA
Sbjct: 413 GFGPNGDTFLLILDNLFKLDQPENALKIWVEMKQFDVVPGSEHYKVLIEGLTKFGWLVKA 472
Query: 245 YEVDAHMGESGVVPEEPELSALLKLSVDA 273
E+ A M G + ++P+L LLK V+
Sbjct: 473 RELYAEMRSKGFL-DDPKLKKLLKDPVEG 500
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+DM +RG + AL + G+ LS + YN L+ CK G S+ G
Sbjct: 409 IDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLIN-GHCKFGDISAAEG--------- 458
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+MI K++P T+TS+ +K A L +M GI P + ++
Sbjct: 459 ------FMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTT 512
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G + G A ++ M E V P + +++ + + K +E L +
Sbjct: 513 LLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 19/132 (14%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
CSK G + +ALRLY + GI S + + LL GL R
Sbjct: 483 CSK-GKINKALRLYHEMTGKGIAPSIYTFTTLL-----------------SGLFRAGLIR 524
Query: 174 -GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
++F +M V PN T+ + + D AF+ +K+M GI P SY P +
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584
Query: 233 FGFCKLGNTDKA 244
G C G +A
Sbjct: 585 HGLCLTGQASEA 596
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G E+ +M+ + P+EA +S+ + E A +LVK++ FG+ P L Y +
Sbjct: 316 GLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALID 375
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK +A + MG+ G+ P + S L+ + K+D L +
Sbjct: 376 SLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEM 428
Score = 45.4 bits (106), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +MI D V P+ T+T++ + D + A +L M GI P +Y + G
Sbjct: 808 ELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGC 867
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
C G KA E+ M G++P
Sbjct: 868 CVAGEMGKATELRNEMLRQGLIP 890
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 17/188 (9%)
Query: 100 RESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS 158
R SP E + ++ KRG + EAL L G++ + YN L+ +S
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALI---------DSL 377
Query: 159 ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
G + +++ L +F +M + PN+ T++ + + + + A + +M
Sbjct: 378 CKGRKFHEAEL-------LFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVD 430
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
G+ + Y + G CK G+ A A M + P ++L+ K++K
Sbjct: 431 TGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINK 490
Query: 279 VYEILHRL 286
+ H +
Sbjct: 491 ALRLYHEM 498
Score = 39.7 bits (91), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 174 GFEIFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
G +F+ MIT + P T +++ V +A +L M S GI P + Y +
Sbjct: 175 GVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVI 234
Query: 233 FGFCKLGNTDKAYEVDAHMGESG----VVPEEPELSALLK 268
C+L + +A E+ AHM +G +VP + L K
Sbjct: 235 RSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCK 274
>gi|224144893|ref|XP_002325452.1| predicted protein [Populus trichocarpa]
gi|222862327|gb|EEE99833.1| predicted protein [Populus trichocarpa]
Length = 864
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 4/133 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ + QM+ + V P T+ + +A A++++ +MK G+ P Y
Sbjct: 661 IEKALATYTQMLNEGVSPGIRTYNLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYNT 720
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K+GN +A + M G+VP+ + L++ K+D+ E+L+ ++ V
Sbjct: 721 LISGHGKIGNKKEAIKFYCEMVTKGLVPKTSTYNVLIEDFAKVGKMDQARELLNEMQ--V 778
Query: 291 RQV--SESTFKII 301
R+V + ST+ I+
Sbjct: 779 RRVPPNSSTYDIL 791
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 18/161 (11%)
Query: 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS 167
R L+ CSK L+++ G+ ++ YN L+ V CG
Sbjct: 579 RALLNACSKCERADTILQMHKRLVGMGLKANREVYNSLITVL---CG------------- 622
Query: 168 NLGL-KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
LG+ KR + M + + + T+ ++ E A QM + G+ P +R
Sbjct: 623 -LGMTKRATLVLNNMTKEGISADTVTYNALIHGHFKSSHIEKALATYTQMLNEGVSPGIR 681
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+Y L G G KAYE+ + M +SG+ P+ + L+
Sbjct: 682 TYNLLLGGLLAAGLMSKAYEILSKMKDSGLDPDASLYNTLI 722
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 16/199 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+G V EA RL++ G H+ N ++Y + +G +E+
Sbjct: 465 IDGLGKKGQVDEAYRLFEKMLDAG-----HNANPVVYTSLIR---NFFIHGRKED----- 511
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
G +IF+++I P+ + + E + + ++S+G P +RSY
Sbjct: 512 ---GHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSI 568
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K G + + M + G + +A++ + KV K YEIL ++
Sbjct: 569 LIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC 628
Query: 291 RQVSESTFKIIEDWFDSVD 309
Q + +T+ I D +D
Sbjct: 629 VQPTVATYGAIVDGLAKID 647
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 19/196 (9%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+L H L +K G E ++ + G L YN ++ CK G
Sbjct: 568 ILIHGL---TKAGQARETSNIFHAMKQQGFALDARAYNAVVD-GFCKSGK---------- 613
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+ + +EI ++M V P AT+ ++ + + A+ L ++ KS GI +
Sbjct: 614 -----VHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNV 668
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
Y + GF K+G D+AY + M + G+ P ++LL V A+++++
Sbjct: 669 VLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQS 728
Query: 286 LRTLVRQVSESTFKII 301
++ + + T+ I+
Sbjct: 729 MKEMKCPPNTYTYSIL 744
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 74/177 (41%), Gaps = 16/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + EA + ++ G+T + + +N LL ++ + N++
Sbjct: 675 IDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLL---------DALVKAEEINEA--- 722
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
FQ M K PN T++ + + AF + M+ G+ P + +Y
Sbjct: 723 ----LVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTT 778
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G K+GN AY + +G +P+ +AL++ +A + + Y++ R
Sbjct: 779 MISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEETR 835
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 63/157 (40%), Gaps = 6/157 (3%)
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
++ MK G R+Y + GFCK G KAYE+ M E V P A++
Sbjct: 584 NIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 643
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
++D+ Y + ++ +++ + + D F V + L + E +++
Sbjct: 644 AKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYL------ILEEMMKK 697
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC 367
G + W V+ +I+E VC + + C
Sbjct: 698 GLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKC 734
Score = 40.0 bits (92), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 81/191 (42%), Gaps = 17/191 (8%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
++ G V +AL L D+ + + + YNV + C K G+ +
Sbjct: 225 AREGQVADALALVDEVKGSCLEPDIVLYNVCID-CFGKAGN---------------VDMA 268
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ F ++ + P++ ++TS+ + A +L QM++ P +Y + G
Sbjct: 269 WKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMG 328
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294
+ G + AY++ + E G +P +++L +KVD+ + ++ + +
Sbjct: 329 YGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDA-EPN 387
Query: 295 ESTFKIIEDWF 305
ST+ II D
Sbjct: 388 SSTYNIIIDML 398
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE----------------- 164
+A L+D+ ++GI ++ Y LL+V S K + +++ ++
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALI 473
Query: 165 --NDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ SN +K FE+ + M KV P+E TF ++ + + E A +L +MK GI
Sbjct: 474 DGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIK 533
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P S+ + G+ + G+ A+ V M ++G P +AL++ ++ D E+
Sbjct: 534 PDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEEL 593
Query: 283 LHRL 286
L +
Sbjct: 594 LKEM 597
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 19/181 (10%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
L H L M +R D EA + + + GI+ YN+L+ C+C +
Sbjct: 367 LIHALFM-EQRTD--EAECMIKEIQEKGISPDAITYNILIN-GYCRCANA---------- 412
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
K+ F + +M+ + P + T+TS+ + K + A DL K++ S G+ P +
Sbjct: 413 -----KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVI 467
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ + G C N A+E+ M V P+E + +++ KV++ E+ +
Sbjct: 468 MFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEM 527
Query: 287 R 287
+
Sbjct: 528 K 528
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGL 171
MC K+G + EA +++++ G+ S YN L+ C N NL +
Sbjct: 301 MC-KQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFC---------------NKGNLDM 344
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ +M+ + P +T+ S+ ++ + A ++K+++ GI P +Y
Sbjct: 345 ASAYK--DEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNIL 402
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+C+ N KA+ + M SG+ P + ++LL
Sbjct: 403 INGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLL 438
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK+ + M T V PN T+ ++ + E A ++ MK I P +YG
Sbjct: 237 LKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGS 296
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G CK G ++A ++ M + G+ P
Sbjct: 297 LISGMCKQGRLEEASKIFEEMVQKGLRP 324
>gi|422294671|gb|EKU21971.1| hypothetical protein NGA_2006000, partial [Nannochloropsis gaditana
CCMP526]
Length = 472
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ ++M+ + P+ TF ++ VA+ + A +V M+ G+ + +Y L G+
Sbjct: 44 QVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAEKMVAYMQEHGVLADVVTYSQLLQGY 103
Query: 236 C-KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
K G+ KA EV M GV P + L++ V A ++D ++L R+RT+
Sbjct: 104 ATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAGEMDWAEDVLERMRTV 158
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 69/171 (40%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GDV A + D + GI + H YN ++ CG + L
Sbjct: 387 KSGDVDRAFDMLDVMTTKGIFPNLHTYNTMI------CGLLKARR----------LDEAL 430
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ + M + V P ++ DP A D + MK GI P + + +L+
Sbjct: 431 ELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTL 490
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G +A ++ + + G+ P+ + L+K A ++DK ++L +
Sbjct: 491 AETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEM 541
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
+AL L++D +S G + YN+LL ++ R N + ++++ +M
Sbjct: 814 KALELFEDMKSAGTHPNNFTYNLLL---------DAHGKSKRIN-------KLYDLYSEM 857
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ +PN T + V + A DL ++ S P +YGP + G K G +
Sbjct: 858 RSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRS 917
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++A ++ M + G P + L+ + ++D E+ ++
Sbjct: 918 EQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKM 962
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/135 (18%), Positives = 62/135 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + E++ +M P+ T+ ++ D E +M+ G P + +Y
Sbjct: 321 LDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTI 380
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ CK G+ D+A+++ M G+ P + ++ + A+++D+ E+L + +L
Sbjct: 381 LIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLG 440
Query: 291 RQVSESTFKIIEDWF 305
+ + ++ + D++
Sbjct: 441 VKPTAFSYVLFIDYY 455
Score = 39.3 bits (90), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
D + FD K K+ GI P L SY + G T+KA E+ M +G P +
Sbjct: 778 DAQNVFD--KFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYN 835
Query: 265 ALLKLSVDAKKVDKVYEILHRLRT 288
LL +K+++K+Y++ +R+
Sbjct: 836 LLLDAHGKSKRINKLYDLYSEMRS 859
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 23/218 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C++ G + EA +L D+ + + YN L + C S+ SE
Sbjct: 323 LCNE-GRIEEAFKLRDEMENLKLLPDVVSYNTL--INGCLEWSKISE------------- 366
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
F++ ++M V PN T + + + + A + + +M+ G P +Y +
Sbjct: 367 -AFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLI 425
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G+CK GN +A+ MG + + L+ +L+ KK+++ Y++L R
Sbjct: 426 NGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYF 485
Query: 293 VSESTF-KIIEDWFD--SVDAAEIGVLNWDVSKVREGI 327
+ E ++ +I +F +VD A + WD K +E I
Sbjct: 486 IDEVSYGTLIVGYFKDGNVDRA---LKLWDEMKEKEII 520
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 17/177 (9%)
Query: 102 SPEGVLRHK-LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP+ V + LD K+G + +A L D +S G+ +++ YN+L+Y CK G
Sbjct: 240 SPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVY-GYCKMG------ 292
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
LK + + M + + P+ T+ + + E AF L +M++
Sbjct: 293 ---------WLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLK 343
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ P + SY + G + +A+++ M E GV P + ++K K+D
Sbjct: 344 LLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMD 400
Score = 43.9 bits (102), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 96/244 (39%), Gaps = 28/244 (11%)
Query: 31 QSNCHTYRSLLCWH-----MHSFTKPITDIKQNRFSAD-LTTGLCTLAFSKKSTVNESSA 84
+ N T+ ++ W+ M + IT ++++ FS D +T + K + E+
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439
Query: 85 PNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNV 144
TM +K + +S L L + + EA +L AR G + + Y
Sbjct: 440 ----TMDEMGRKNMKMDSV--TLNTILRTLCREKKLEEAYKLLSSARKRGYFIDEVSYGT 493
Query: 145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE 204
L+ G N DR +++ +M ++ P+ T+ +
Sbjct: 494 LI------VGYFKDGNVDR----------ALKLWDEMKEKEIIPSTVTYNCIIGGLCQCG 537
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
E A + ++ G+ P +Y L G+C+ G+ +KA++ M E+ P+ +
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCN 597
Query: 265 ALLK 268
LL+
Sbjct: 598 ILLR 601
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 75/175 (42%), Gaps = 19/175 (10%)
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
++DA GI + + +N+++Y EN K E M
Sbjct: 196 FNDAIKLGIVPNVNTFNIVIY-------GYCLENK---------FKDAVEFLNVMGKYNC 239
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
P+ T+ ++ K A DL+ MKS G+ P +Y ++G+CK+G +A
Sbjct: 240 SPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAAN 299
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI---LHRLRTLVRQVSESTF 298
V M ++ ++P+ + L+ + ++++ +++ + L+ L VS +T
Sbjct: 300 VIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTL 354
>gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana]
Length = 1089
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G V +A Y RS + + +N L+ C ++G
Sbjct: 544 IDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACG--------QSG--------A 587
Query: 171 LKRGFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M T +DP+ + ++ + E A ++ + + +GI Y
Sbjct: 588 VDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVY 647
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
A+ K G+ D A + M E V P+E SAL+ ++ AK +D+ + IL ++
Sbjct: 648 TIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKS 707
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ +C+ D+ A + + +G+T Y L+ C+ K G
Sbjct: 474 MSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCA-KSGK--------------- 517
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F QM V+ N TF ++ AF ++S + P R
Sbjct: 518 VDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPD-RVVFN 576
Query: 231 ALFGFC-KLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVDK---VYEILH 284
AL C + G D+A++V A M + P+ + AL+K +A +V++ VY+++H
Sbjct: 577 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIH 636
Query: 285 R 285
+
Sbjct: 637 K 637
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C G V A +Y GI + Y + + CS ++GD +
Sbjct: 616 MKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCS--------KSGDWD------ 661
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
I++ M V P+E F+++ +A + + AF +++ KS GI SY
Sbjct: 662 --FACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSS 719
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ C + KA E+ + + P ++AL+ + ++ K E L ++TL
Sbjct: 720 LMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLG 779
Query: 291 RQVSESTFKII 301
+ + T+ ++
Sbjct: 780 LKPNTITYSML 790
>gi|387219093|gb|AFJ69255.1| hypothetical protein NGATSA_2006000, partial [Nannochloropsis
gaditana CCMP526]
Length = 479
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ ++M+ + P+ TF ++ VA+ + A +V M+ G+ + +Y L G+
Sbjct: 51 QVLKRMVQAGLSPDTYTFNTLIAAFVARREVRAAEKMVAYMQEHGVLADVVTYSQLLQGY 110
Query: 236 C-KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
K G+ KA EV M GV P + L++ V A ++D ++L R+RT+
Sbjct: 111 ATKEGDMGKAEEVLERMARDGVAPNSYTYNYLIEGYVKAGEMDWAEDVLERMRTV 165
>gi|115436822|ref|NP_001043145.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|56201654|dbj|BAD73118.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113532676|dbj|BAF05059.1| Os01g0505500 [Oryza sativa Japonica Group]
gi|125570544|gb|EAZ12059.1| hypothetical protein OsJ_01942 [Oryza sativa Japonica Group]
Length = 540
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A ++ D+ R +GI + Y+++L N +++ ++ + +FQ+M
Sbjct: 383 AFKMVDEMRKSGIGPNTRTYDIIL-------------NHLIKSEK---IEEAYNLFQRME 426
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
D +P T+T + + + E +MA + KQMK G+ P + + + G C +
Sbjct: 427 RDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFENRLE 486
Query: 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+A M + G+ P S L + V+ ++ E+ RL L R
Sbjct: 487 EACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLRR 535
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
L F++ +M + PN T+ + + E E A++L ++M+ G P+L +Y
Sbjct: 378 LEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTY 437
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ FC D A +V M E GV+P SAL+
Sbjct: 438 TMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALI 476
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V EA+ ++ S G+ YN L+ + S + +K+ IF+
Sbjct: 204 VKEAVETFEKMSSFGLKTDLSDYNWLIDILS----------------KSKQVKKAHAIFK 247
Query: 180 QMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+M + P+ T+T + ++D M + ++M GI P + +YG + FCK
Sbjct: 248 EMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKS 307
Query: 239 GNTDKAYEVDAHMGESGVVP 258
G D+A +V M ESG +P
Sbjct: 308 GKCDEAIKVFHEMEESGCMP 327
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ EA+ L + S ++ Y +L+ + C + +R
Sbjct: 351 KSGNMLEAVGLLSEMESLNLSPDVFTYTILI---NGLCIEDQVAEANR------------ 395
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+FQ+M +++ P+ AT+ S+ + + E A DL +M + G+ P + ++ + G+
Sbjct: 396 -LFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGY 454
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C + + A + M G+VP+ +AL+
Sbjct: 455 CNVRDIKAAMGLYFEMTIKGIVPDVVTYTALI 486
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
Y S G+ H Y VL + C K G S + + ++LG+K I+ I D
Sbjct: 187 YQLMISRGLVPDVHIYFVL-FQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLC 245
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
N+ E+ E F+L MK G+ P L +Y + G+CK GN +AY
Sbjct: 246 RDNKM------------EEAEKMFEL---MKKHGVLPNLYTYSAMIDGYCKTGNVRQAYG 290
Query: 247 VDAHMGESGVVP 258
+ + + ++P
Sbjct: 291 LYKEILVAELLP 302
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
PN ++T + R A + A L++ M+S G+ + +YG + G C DKA E+
Sbjct: 113 PNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVEL 172
Query: 248 DAHMGESGVVPEEPELSALLK 268
M ESG+ P S+LL+
Sbjct: 173 MGEMCESGIEPNVVVYSSLLQ 193
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 18/197 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G +A + D G+ + YNVL+ C CK GS
Sbjct: 227 IDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLIN-CMCKEGS--------------- 270
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVAR-LAVAKEDPEMAFDLVKQMKSFGI-PPKLRSY 228
+K + ++M V P+ T+ ++ + L+ E E + L + ++ I P + ++
Sbjct: 271 VKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTF 330
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G C +G +A++V A M E+G + + L+ + KV K E++ + +
Sbjct: 331 NSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS 390
Query: 289 LVRQVSESTFKIIEDWF 305
L + T+ I+ F
Sbjct: 391 LGLEPDSFTYSILIKGF 407
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 6/126 (4%)
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
DR D +GL R M + V + T+ ++ R + + A +L+ +M G
Sbjct: 127 ADRLADQAVGLLR------SMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 180
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I P + Y L G+CK G + +V M E G+ P+ + L+ K K +
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240
Query: 281 EILHRL 286
++ +
Sbjct: 241 GVMDMM 246
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 26/196 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG----DREND 166
+D +RG + EALRL GI YN+L NG R ++
Sbjct: 399 MDGYCRRGKMDEALRLQAIMEKKGINADVFTYNIL-------------ANGLCKLHRYDE 445
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
+ I M+ V PN TFT + + + A L + M+ G P +
Sbjct: 446 AKC-------ILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNII 498
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH-- 284
+Y + +CK +A+++ + M G++P+ S+L+ +VD+ ++ +
Sbjct: 499 TYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEM 558
Query: 285 RLRTLVRQVSESTFKI 300
RL+ + R V+ T I
Sbjct: 559 RLKGITRNVATYTSMI 574
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 16/142 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
S GD+ EA +++++ R I + + Y+ ++ S S G+ +KR
Sbjct: 298 SSSGDIEEAEKIFEEMREKNIEMDVYVYSSMI--------SWSRRLGN--------MKRA 341
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
F +F +M + PN T+ ++ E A L+ +M+S G+ L + + G
Sbjct: 342 FALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDG 401
Query: 235 FCKLGNTDKAYEVDAHMGESGV 256
+C+ G D+A + A M + G+
Sbjct: 402 YCRRGKMDEALRLQAIMEKKGI 423
Score = 45.8 bits (107), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+++ K G++ EA RL+ D G + YN L+ C E
Sbjct: 469 IEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLI---DAYCKKEK------------- 512
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ +I +MI + P+ T++S+ + A L +M+ GI + +Y
Sbjct: 513 VKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTS 572
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G K G D+A+++ M + G++P++ ++L+
Sbjct: 573 MISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLV 609
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 56/114 (49%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R ++ + ++ P+ T++ +A + + AF+LVK+M G P L +Y
Sbjct: 347 VDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNT 406
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
+ G CK T+KAYE+ + SG VP+ + ++ ++DK +++
Sbjct: 407 LIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVE 460
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+R + M P+ T+ ++ +++ + A DLV + S G P + +Y
Sbjct: 312 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI 371
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
G CK G D+A+E+ M G P + L+ A K +K YE+L L +
Sbjct: 372 LADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSG 431
Query: 291 RQVSESTFKIIED 303
T+ II D
Sbjct: 432 FVPDVVTYTIIVD 444
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+ ++M PN T+ ++ E A++L++ + S G P + +Y
Sbjct: 382 IDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTI 441
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK G DKA ++ M + G P +AL++ +VD+ + I +
Sbjct: 442 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEM 497
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK EIF+ + + P+ + ++ K D + A + +K+M + P + +Y
Sbjct: 211 LKDALEIFRNIPS----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNI 266
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G CK TDKA E+ M + GV P+ ++++ A K ++ + +L
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLL 319
Score = 43.5 bits (101), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 69/176 (39%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + E +++D G + YN+++ CK G
Sbjct: 545 MDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGL-CKHGK--------------- 588
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F + M + P+ ++ + P+ A ++ QM GIPP +Y
Sbjct: 589 VDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNT 648
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK D A + +M ++GV P+ + L+ ++ YE++H +
Sbjct: 649 LMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEM 704
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 112 DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL 171
D KRG + EA L + G T + YN L+ C + +E
Sbjct: 374 DGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLI---DGLCKASKTE------------ 418
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ +E+ + +++ P+ T+T + + + A +V+ M G P + +Y
Sbjct: 419 -KAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTAL 477
Query: 232 LFGFCKLGNTDKAYEVDAHM 251
+ G C+ G D+A+ + M
Sbjct: 478 MEGLCRTGRVDEAHHIFKEM 497
>gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana]
Length = 1089
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G V +A Y RS + + +N L+ C ++G
Sbjct: 544 IDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACG--------QSG--------A 587
Query: 171 LKRGFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M T +DP+ + ++ + E A ++ + + +GI Y
Sbjct: 588 VDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVY 647
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
A+ K G+ D A + M E V P+E SAL+ ++ AK +D+ + IL ++
Sbjct: 648 TIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKS 707
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ +C+ D+ A + + +G+T Y L+ C+ K G
Sbjct: 474 MSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCA-KSGK--------------- 517
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F QM V+ N TF ++ AF ++S + P R
Sbjct: 518 VDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPD-RVVFN 576
Query: 231 ALFGFC-KLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVDK---VYEILH 284
AL C + G D+A++V A M + P+ + AL+K +A +V++ VY+++H
Sbjct: 577 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIH 636
Query: 285 R 285
+
Sbjct: 637 K 637
Score = 39.3 bits (90), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C G V A +Y GI + Y + + CS ++GD +
Sbjct: 616 MKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCS--------KSGDWD------ 661
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
I++ M V P+E F+++ +A + + AF +++ KS GI SY
Sbjct: 662 --FACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSS 719
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ C + KA E+ + + P ++AL+ + ++ K E L ++TL
Sbjct: 720 LMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLG 779
Query: 291 RQVSESTFKII 301
+ + T+ ++
Sbjct: 780 LKPNTITYSML 790
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V EAL ++++ GI YN+L+ CK G L ++
Sbjct: 374 GRVDEALGMFEEMVKKGIEHDVITYNILIQGL-CKAGR---------------LSEAIQV 417
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++Q+++ ++P+ +TFT + + + A +L+K M + G+ P R + GFCK
Sbjct: 418 YEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCK 477
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ A M + + P E ++L++L + +VD +L+ +
Sbjct: 478 ARRPEDGMAWLAGMLKKNLKPREHTFNSLVELLSSSGRVDDALLVLNTM 526
Score = 43.1 bits (100), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 21/194 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
EALR++++ + G + Y + +C C E+ + I+ +
Sbjct: 273 EALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQ-----------------IWNE 315
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+ ++PNE + S+ D EMA + +M G+ S + GFC G
Sbjct: 316 MVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGR 375
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300
D+A + M + G+ + + L++ A ++ + ++ +L + + S STF
Sbjct: 376 VDEALGMFEEMVKKGIEHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTP 435
Query: 301 IEDWF---DSVDAA 311
+ D VDAA
Sbjct: 436 LIDTMCEEGQVDAA 449
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M PN T++S+ + ++A ++ +M P + Y + G C
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K+G TD+AY + + M E G P +A++ A KVDK E++ ++
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM 802
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + I ++M++ P+ +T++ V L + AF L ++MKS + P + +Y
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK+G +A + M G P +AL+ + A+K+ E+ +
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMM 576
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A L+++ +SN + Y +L+ CK G L++ + F +M+
Sbjct: 499 AFLLFEEMKSNHVVPDVFTYTILI-DSFCKVGL---------------LQQARKWFDEMV 542
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
D PN T+T++ + A +L + M S G P + +Y + G CK G +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Query: 243 KAYEVDAHMGESGVVPE 259
KA ++ A M + +P+
Sbjct: 603 KACQIYARMRGNADIPD 619
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 48/117 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ +M+ + PN +T + + A+ L+ M+ G P + +Y
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GF K G DK E+ MG G P L+ A +D +++L ++
Sbjct: 782 MIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
DPN T+ ++ + A DL+ M G P Y + GFCK+G D+A
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
V M E G P S+L+ K++D ++L R+
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRM 732
>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 59/145 (40%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+++F++M + P+ TFT + + K +A L+ QM G+ P Y +
Sbjct: 344 AYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTIID 403
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
CK G + A+ + M E G+ P+ +AL+ +V + + ++
Sbjct: 404 HLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYP 463
Query: 294 SESTFKIIEDWFDSVDAAEIGVLNW 318
E T+K+I I + W
Sbjct: 464 DEVTYKLIIGGLIEEKKISIACMVW 488
>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
Length = 551
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 115/274 (41%), Gaps = 40/274 (14%)
Query: 176 EIFQQMITDKV---DPNEATFTSVARLAVAKED-PEMAFDLVKQMKSFGIPPKLRSYGPA 231
E+F+ M T+ + P T+ S+ +A+AK D E F+L+ M++ G P + +Y
Sbjct: 307 ELFEFMRTEGLTVSSPTAKTY-SIMIVALAKADRMEECFELLSDMRTCGCMPDVTTYKDL 365
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ G C +G D AY V MG +G P+ + L + + D E+ R+
Sbjct: 366 IEGMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVLCSLRNADDALELCERMIEAHC 425
Query: 292 QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQ 351
+ S T+ ++ F + A + D+ WL K +R
Sbjct: 426 EPSVHTYNMLMMMFFEMGEAHRAL---DI------------------WLEMDKRGCQRA- 463
Query: 352 IDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAV 411
ID E ++ D ETE +A++L + R+++ + KF + R AV
Sbjct: 464 IDT-------YEIMIYGLFDCGETE-YATALLDEVINRDMKLSYKKFDAIMLR---LSAV 512
Query: 412 IDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKR 445
+ + +++H FY N ++R ++ K+
Sbjct: 513 GNLGAIHRLSEHMRKFY--NVAMSRRFAITQKKK 544
>gi|125531299|gb|EAY77864.1| hypothetical protein OsI_32907 [Oryza sativa Indica Group]
Length = 1089
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G V +A Y S + + +N L+ C E+G
Sbjct: 538 IDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG--------ESG--------A 581
Query: 171 LKRGFEIFQQMITDKVD--------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ R F++ +M + + P+ T ++ + + + A ++ K ++ + I
Sbjct: 582 VARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIK 641
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
Y AL G+ A ++ M + GV P+E LSAL+ ++ A++ D +EI
Sbjct: 642 GTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEI 701
Query: 283 LHRLRTLVRQV 293
+ R QV
Sbjct: 702 MKDARAKGYQV 712
Score = 45.4 bits (106), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L +C+ D AL++ + G+ Y L+ C+ KCG
Sbjct: 468 LSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCA-KCGK--------------- 511
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F +M++ ++PN T++++ AF M S + P R
Sbjct: 512 VDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPD-RVVFN 570
Query: 231 ALFGFC-KLGNTDKAYEVDAHM--------GESGVVPEEPELSALLKLSVDAKKVDKVYE 281
AL C + G +A++V + M G ++P+ + AL+K + A + D+ E
Sbjct: 571 ALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRARE 630
Query: 282 ILHRLR 287
+ L+
Sbjct: 631 VYKMLQ 636
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ F + ++MI P+ +T++ V E+AF L ++MK G+ + +Y
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK G ++A + M E G P +AL+ + AKKV E+ +
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579
Score = 40.0 bits (92), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 25/199 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENG 161
LD K V EA +L D G +Q Y+ L+ CK G +E SE+G
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL-CKVGKLDEAQEVKTEMSEHG 704
Query: 162 DREN--------DSNLGLKR---GFEIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEM 208
D +KR ++ +M+ + PN +T + V K D
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE-- 762
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A+ L++ M+ G P + +Y + GF +G + E+ MG GV P L+
Sbjct: 763 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID 822
Query: 269 LSVDAKKVDKVYEILHRLR 287
+D + +L ++
Sbjct: 823 HCCKNGALDVAHNLLEEMK 841
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M PN T+T++ + + A +L + M S G P + +Y + G CK
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 238 LGNTDKAYEVDAHMGESGVVPE 259
G +KA ++ M S VP+
Sbjct: 601 AGQVEKACQIFERMCGSKDVPD 622
Score = 38.5 bits (88), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+Q + PN T+ ++ E A L+ M G P Y + G CK
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+G D+A EV M E G S+L+ K+ D ++L ++
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 909
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 84/199 (42%), Gaps = 19/199 (9%)
Query: 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
E +L H L KRG + +AL L+D R GI ++ + YN L+ CK GS
Sbjct: 396 EVTYAILIHAL---CKRGMIEDALCLFDKMRDKGIKVTVYPYNSLIN-GYCKQGS----- 446
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
L R + M+ + + P A+++ + D +L ++M G
Sbjct: 447 ----------LDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERG 496
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I ++ + GFCK D+A + M +S V+P E + +++ + K +
Sbjct: 497 IAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAF 556
Query: 281 EILHRLRTLVRQVSESTFK 299
++ ++ + + T++
Sbjct: 557 QLYDQMVEMGLKPDNYTYR 575
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 16/157 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+ V EA L G+ + YN L+ C +E ++ DR
Sbjct: 333 IDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALI---DKLCKNERFDDADR------- 382
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+F++M ++PNE T+ + + E A L +M+ GI + Y
Sbjct: 383 ------LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNS 436
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ G+CK G+ D+A + + M + G+ P S L+
Sbjct: 437 LINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLI 473
>gi|18642701|gb|AAL76193.1|AC092173_5 Putative crp1 protein [Oryza sativa Japonica Group]
Length = 1089
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G V +A Y S + + +N L+ C E+G
Sbjct: 538 IDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG--------ESG--------A 581
Query: 171 LKRGFEIFQQMITDKVD--------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ R F++ +M + + P+ T ++ + + + A ++ K ++ + I
Sbjct: 582 VARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIK 641
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
Y AL G+ A ++ M + GV P+E LSAL+ ++ A++ D +EI
Sbjct: 642 GTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEI 701
Query: 283 LHRLRTLVRQV 293
+ R QV
Sbjct: 702 MKDARAKGYQV 712
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L +C+ D AL++ + G+ Y L+ C+ KCG
Sbjct: 468 LSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCA-KCGK--------------- 511
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F +M++ ++PN T++++ AF M S + P R
Sbjct: 512 VDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPD-RVVFN 570
Query: 231 ALFGFC-KLGNTDKAYEVDAHM--------GESGVVPEEPELSALLKLSVDAKKVDKVYE 281
AL C + G +A++V + M G ++P+ + AL+K + A + D+ E
Sbjct: 571 ALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRARE 630
Query: 282 ILHRLR 287
+ L+
Sbjct: 631 VYKMLQ 636
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ EA+ L++ N + YN+L+ C E ++G +
Sbjct: 283 KLGNMDEAVVLFNQMLENSCSPDVFTYNILI---DGYCKQERPQDGAK------------ 327
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ Q+M+ +PN T+ ++ V AF+L + M P ++ + F
Sbjct: 328 -LLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMF 386
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK+G D AYE+ M + G +P+ + ++ + A ++D ++L R+
Sbjct: 387 CKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERM 437
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F + Q M+ P+ TF + + ++A++L + M G P + +Y +
Sbjct: 360 AFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMIS 419
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G C+ D A ++ M E+G P+ ++++ A +VD+ YE+ LR
Sbjct: 420 GACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLR 473
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L +E+FQ M P+ T+ + A + A L+++M G PP + +Y
Sbjct: 392 LDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNS 451
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK D+AYEV + G + S L+ ++++D ++L +
Sbjct: 452 IVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREM 507
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 53/118 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ G + + M+ V P+ +TSV + + A++L K MK G P + +Y
Sbjct: 567 VRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNV 626
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ CK+ D+A + M G +P+ +++ + + DK + + +++
Sbjct: 627 LVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKS 684
Score = 40.8 bits (94), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 11/133 (8%)
Query: 201 VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
V K+ + A+DL K + P +Y + GFCK + +AY + M + G+VP
Sbjct: 143 VRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHN 202
Query: 261 PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES--TFKIIEDWFDSVDAAEIGVLNW 318
+ ++K D +VD L R + R + S T+ I+ D +A I
Sbjct: 203 AVYNTIIKGLCDNGRVDSA---LVHYRDMQRNCAPSVITYTILVDAL--CKSARIS---- 253
Query: 319 DVSKVREGIVRGG 331
D S + E ++ G
Sbjct: 254 DASLILEDMIEAG 266
>gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g34830, chloroplastic; Flags: Precursor
gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1089
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G V +A Y RS + + +N L+ C ++G
Sbjct: 544 IDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACG--------QSG--------A 587
Query: 171 LKRGFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M T +DP+ + ++ + E A ++ + + +GI Y
Sbjct: 588 VDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVY 647
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
A+ K G+ D A + M E V P+E SAL+ ++ AK +D+ + IL ++
Sbjct: 648 TIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKS 707
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ +C+ D+ A + + +G+T Y L+ C+ K G
Sbjct: 474 MSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCA-KSGK--------------- 517
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F QM V+ N TF ++ AF ++S + P R
Sbjct: 518 VDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPD-RVVFN 576
Query: 231 ALFGFC-KLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVDK---VYEILH 284
AL C + G D+A++V A M + P+ + AL+K +A +V++ VY+++H
Sbjct: 577 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIH 636
Query: 285 R 285
+
Sbjct: 637 K 637
Score = 39.3 bits (90), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C G V A +Y GI + Y + + CS ++GD +
Sbjct: 616 MKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCS--------KSGDWD------ 661
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
I++ M V P+E F+++ +A + + AF +++ KS GI SY
Sbjct: 662 --FACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSS 719
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ C + KA E+ + + P ++AL+ + ++ K E L ++TL
Sbjct: 720 LMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLG 779
Query: 291 RQVSESTFKII 301
+ + T+ ++
Sbjct: 780 LKPNTITYSML 790
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 120/290 (41%), Gaps = 42/290 (14%)
Query: 83 SAPNTGTMSNKSKKKARRESPEGV------LRHKLDMCSKRGDVFEALRLYDDARSNGIT 136
+A TG ++ AR+ + +GV ++ K GD ALRL+++ +++G T
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCT 423
Query: 137 LSQHHYNVLL-YVCSC-KCGSESSENGDRENDS-----------------NLGLKRGFEI 177
+ YN L+ +CS K G D E+ + ++ E+
Sbjct: 424 PDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEV 483
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F QM + N TF ++ + + AF L+ QM S G+ P +Y L +CK
Sbjct: 484 FDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCK 543
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL-VRQVSES 296
G+ KA ++ M +G + L+ A + ++L +R +R ++
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKA 603
Query: 297 TFKIIEDWF------DSV----DAAEIG----VLNWDVSKVREGIVRGGG 332
+++ F D++ + AE+G L + + V G+ RGGG
Sbjct: 604 YNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKI--VFRGLCRGGG 651
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 16/184 (8%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V AL++ D G YN+++ C CK G G I
Sbjct: 302 VGHALKVMDVMVQEGHDPDVFTYNIVVN-CLCKNGQLEEAKG---------------ILN 345
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
QM+ P+ TF ++ E A DL +Q+ G+ P + ++ + CK+G
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
+ A + M SG P+E + L+ K+ K ++L + + S T+
Sbjct: 406 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYN 465
Query: 300 IIED 303
I D
Sbjct: 466 TIID 469
>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+E F + R+ + + + ++MK FGI P++ Y + G K G+ D A V
Sbjct: 185 PSEKQFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSV 244
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
E G+V E L+K A ++D+V E+L R+R
Sbjct: 245 YEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMR 284
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 23/186 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G++ LR++++ R + + Y L+ + C NG+R + GFE+
Sbjct: 306 GNLDGCLRVWEEMRKDKVEPDVMAYTTLV---AALC------NGNR-------VGEGFEL 349
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M K + A + S+ V E A DL+K + G L Y + G C
Sbjct: 350 FKEMKQKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCN 409
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
+ DKAY++ + P + +L + K++D +L +++ L
Sbjct: 410 VKQVDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKL-------G 462
Query: 298 FKIIED 303
F +I+D
Sbjct: 463 FPVIDD 468
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M PN T++S+ + ++A ++ +M P + Y + G C
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K+G TD+AY + + M E G P +A++ A KVDK E++ ++
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM 802
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + I ++M++ P+ +T++ V L + AF L ++MKS + P + +Y
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK+G +A + M G P +AL+ + A+K+ E+ +
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMM 576
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A L+++ +SN + Y +L+ CK G L++ + F +M+
Sbjct: 499 AFLLFEEMKSNHVVPDVFTYTILI-DSFCKVGL---------------LQQARKWFDEMV 542
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
D PN T+T++ + A +L + M S G P + +Y + G CK G +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Query: 243 KAYEVDAHMGESGVVPE 259
KA ++ A M + +P+
Sbjct: 603 KACQIYARMRGNADIPD 619
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 48/117 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ +M+ + PN +T + + A+ L+ M+ G P + +Y
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTA 781
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GF K G DK E+ MG G P L+ A +D +++L ++
Sbjct: 782 MIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
DPN T+ ++ + A DL+ M G P Y + GFCK+G D+A
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
V M E G P S+L+ K++D ++L R+
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRM 732
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 61/131 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + ++M P+ T+TS+ ++D + + L+ +M+ PP + +Y
Sbjct: 345 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 404
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ K G T +A + + E GV P+ ++L+ + A +++ Y ++ +RT
Sbjct: 405 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 464
Query: 291 RQVSESTFKII 301
+ +TF +
Sbjct: 465 IAPNVTTFNTL 475
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 18/163 (11%)
Query: 99 RRESPEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156
+R P V+ + + M K G EAL +D + +G+ YN L+Y+ + G
Sbjct: 392 KRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILG-RAGR- 449
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
L+ + + ++M T + PN TF ++ A E A L+ +M
Sbjct: 450 --------------LEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 495
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ P +++Y P L CK + HM + P+
Sbjct: 496 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPD 538
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 19/207 (9%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLL---------------YVCSCKCG---SESSE 159
G + EA++L + G+TLS +N L+ Y +CG S S+
Sbjct: 436 GRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTC 495
Query: 160 NGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
N G L+ + +M+ N+ +T + + E A L K+MK
Sbjct: 496 NSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKE 555
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
GI P ++ + G K GN ++AYEV M G VP ++L++ D +V +
Sbjct: 556 RGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTE 615
Query: 279 VYEILHRLRTLVRQVSESTFKIIEDWF 305
++ +R TF II D F
Sbjct: 616 ALKLEKEMRQKGLLSDTFTFNIIIDGF 642
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 20/193 (10%)
Query: 95 KKKARRESPEGV-LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSC- 151
+ K R P+ V +D SK G+V EA ++ + + G + YN L+ +C C
Sbjct: 552 EMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCG 611
Query: 152 ------KCGSESSENGDRENDSNLG-----------LKRGFEIFQQMITDKVDPNEATFT 194
K E + G + +K E F M + P+ TF
Sbjct: 612 RVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFN 671
Query: 195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254
+ D A ++V +M S G+ P + +Y + G+C++ ++A + + +
Sbjct: 672 ILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISA 731
Query: 255 GVVPEEPELSALL 267
G+VP+ + +L
Sbjct: 732 GIVPDTVTYNTML 744
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 171 LKRGFEIFQQMITDK---VDPNEATF-TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
L G +FQ+M + K PN T+ V L AK+ E A +LV +M ++G+ P +
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDE-AQELVNEMANYGLSPDVV 375
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+Y + G CKLG D+A ++ M + GV P+ +++L A KVD L +
Sbjct: 376 TYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETM 435
Query: 287 RT 288
+
Sbjct: 436 KA 437
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 25/229 (10%)
Query: 73 FSKKSTVNESSAPNTGTMS-NKSKKKARRESPEGVLRHKL---DMCSKRGDVFEALRLYD 128
F+ ++ + N G ++ K ++ RR P + + +C K G++ +A L
Sbjct: 39 FTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLC-KAGELDKAKELLG 97
Query: 129 DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK-VD 187
R +G+ L+ Y+V++ C CK R +D+ EIF+ M +
Sbjct: 98 QLRESGVKLNVITYSVVIDGC-CK--------ASRVDDA-------LEIFKTMSSGGGCV 141
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ TF S+ + + E AF L + M G P + SY L G CK G D+A +
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
M E V P+L A K ++V E R +V + S++
Sbjct: 202 WEEMVEKSCV---PDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKA 247
Score = 48.1 bits (113), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 151 CKCG-SESSENGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE---- 204
CK G +E ++N E+ G L + F++MI+ P+ F ++ AV K
Sbjct: 260 CKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIH-AVCKSKRLP 318
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
D + F +K MK F PP L +Y + CK D+A E+ M G+ P+ S
Sbjct: 319 DGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378
Query: 265 ALLKLSVDAKKVDKVYEILHRL 286
AL+ K+D+ ++L +
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEM 400
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 26/219 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGS------------- 155
+D K V EA RL+D G++ + Y+VL+ Y CK G
Sbjct: 369 IDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGY---CKVGKVDEAGCLFEKMLS 425
Query: 156 -ESSENGDREND------SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
S N N S LK +F QM+ + P TF + + + D +
Sbjct: 426 KNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDD 485
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A +++M S G P R+Y + +C G +A ++ M E GV P++ ++L+K
Sbjct: 486 AHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIK 545
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTF-KIIEDWFD 306
+++L + + S TF +I+ FD
Sbjct: 546 AYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFD 584
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 17/164 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+CS G++ EAL L+D G+ + + +N+L+ + GD ++
Sbjct: 442 LCSA-GNLKEALSLFDQMVKMGLKPTVYTFNILI--------GRMLKQGDFDD------- 485
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ Q+M++ P T+ + + + + A D++ QMK G+PP +Y +
Sbjct: 486 -AHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLI 544
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276
+ KLG T A++V M ++ P +L+K D + V
Sbjct: 545 KAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYV 588
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ +F +M D PN T+T++ + + +++ A L+ +M + P L +Y
Sbjct: 274 IDEAVSLFVRMKDDCCYPNVYTYTALIK-GLCRKNVHKAMGLLDEMLERNLVPDLITYNS 332
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C+ G+ D AY + + M E G+VP++ + + +V++ + L
Sbjct: 333 LIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSL 388
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M PN T++S+ + ++A ++ +M P + Y + G C
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLC 752
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K+G TD+AY + + M E G P +A++ A KVDK E++ ++
Sbjct: 753 KVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQM 802
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ + I ++M++ P+ +T++ V L + AF L ++MKS + P + +Y
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK+G +A + M G P +AL+ + A+K+ E+ +
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMM 576
Score = 45.1 bits (105), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
L ++ +M+ + PN +T + V K D A+ L+ M+ G P + +Y
Sbjct: 722 LDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDE--AYRLMSMMEEKGCHPNVVTY 779
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GF K G DK E+ MG G P L+ A +D +++L ++
Sbjct: 780 TAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMK 838
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A L+++ +SN + Y +L+ CK G L++ + F +M+
Sbjct: 499 AFLLFEEMKSNHVVPDVFTYTILIDS-FCKVGL---------------LQQARKWFDEMV 542
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
D PN T+T++ + A +L + M S G P + +Y + G CK G +
Sbjct: 543 RDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIE 602
Query: 243 KAYEVDAHMGESGVVPE 259
KA ++ A M + +P+
Sbjct: 603 KACQIYARMRGNADIPD 619
Score = 44.3 bits (103), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%)
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
DPN T+ ++ + A DL+ M G P Y + GFCK+G D+A
Sbjct: 633 DPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQM 692
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
V M E G P S+L+ K++D ++L R+
Sbjct: 693 VFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRM 732
>gi|222612526|gb|EEE50658.1| hypothetical protein OsJ_30888 [Oryza sativa Japonica Group]
Length = 869
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 24/196 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G V +A Y S + + +N L+ C E+G
Sbjct: 318 IDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG--------ESG--------A 361
Query: 171 LKRGFEIFQQMITDK--------VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ R F++ +M + + P+ T ++ + + + A ++ K ++ + I
Sbjct: 362 VARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIK 421
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
Y AL G+ A ++ M + GV P+E LSAL+ ++ A++ D +EI
Sbjct: 422 GTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEI 481
Query: 283 LHRLRTLVRQVSESTF 298
+ R QV +
Sbjct: 482 MKDARAKGYQVGTIAY 497
Score = 45.8 bits (107), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L +C+ D AL++ + G+ Y L+ C+ KCG +
Sbjct: 248 LSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCA-KCGKVDAM----------- 295
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
FE+F +M++ ++PN T++++ AF M S + P R
Sbjct: 296 ----FEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPD-RVVFN 350
Query: 231 ALFGFC-KLGNTDKAYEVDAHM--------GESGVVPEEPELSALLKLSVDAKKVDKVYE 281
AL C + G +A++V + M G ++P+ + AL+K + A + D+ E
Sbjct: 351 ALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRARE 410
Query: 282 ILHRLR 287
+ L+
Sbjct: 411 VYKMLQ 416
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ F + ++MI P+ +T++ V E+AF L ++MK G+ + +Y
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK G ++A + M E G P +AL+ + AKKV E+ +
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579
Score = 40.0 bits (92), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 25/199 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENG 161
LD K V EA +L D G +Q Y+ L+ CK G +E SE+G
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL-CKVGKLDEAQEVKTEMSEHG 704
Query: 162 DREN--------DSNLGLKR---GFEIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEM 208
D +KR ++ +M+ + PN +T + V K D
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE-- 762
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A+ L++ M+ G P + +Y + GF +G + E+ MG GV P L+
Sbjct: 763 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID 822
Query: 269 LSVDAKKVDKVYEILHRLR 287
+D + +L ++
Sbjct: 823 HCCKNGALDVAHNLLEEMK 841
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M PN T+T++ + + A +L + M S G P + +Y + G CK
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 238 LGNTDKAYEVDAHMGESGVVPE 259
G +KA ++ M S VP+
Sbjct: 601 AGQVEKACQIFERMCGSKDVPD 622
Score = 38.5 bits (88), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+Q + PN T+ ++ E A L+ M G P Y + G CK
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+G D+A EV M E G S+L+ K+ D ++L ++
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/198 (18%), Positives = 85/198 (42%), Gaps = 16/198 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ GD+ EA ++ + + GI+ + + Y++++ C+ G + R
Sbjct: 264 RAGDISEAESVFREMKMAGISPNVYTYSIVIDAL-CRSGQ---------------ITRAH 307
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M+ +PN TF ++ R+ + E + QMK L +Y +
Sbjct: 308 DVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRLRCAADLITYNFLIETH 367
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK N +A +V M ++ P + + + ++ V+ + + R++ + + +
Sbjct: 368 CKDDNLGEAIKVLNSMAKNDCTPNASSFNPIFRCIAKSQDVNGAHRMFARMKEVGCKPNT 427
Query: 296 STFKIIEDWFDSVDAAEI 313
T+ I+ F +A++
Sbjct: 428 VTYNILMRMFAVPKSADM 445
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F + K +P+ +TS+ D A + ++MK GI P + +Y + C+
Sbjct: 240 FFDNLKHKFEPDVIVYTSLVHGWCRAGDISEAESVFREMKMAGISPNVYTYSIVIDALCR 299
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
G +A++V A M ++G P + L+++ + A + +KV ++ ++++ L
Sbjct: 300 SGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQVYNQMKRL 351
>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
Length = 551
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 176 EIFQQMITDKV---DPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRSYGPA 231
E+F+ M T+ + P T+ S+ +A+AK D E F+L+ M++ G P + +Y
Sbjct: 307 ELFEFMRTEGLTVSSPTAKTY-SIMIVALAKADRMEECFELLSDMRTCGCMPDVTTYKDL 365
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ G C +G D AY V MG +G P+ + L + + D E+ R+
Sbjct: 366 IEGMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVLCSLRNADDALELCERMIEAHC 425
Query: 292 QVSESTFKIIEDWFDSVDAAEIGVLNW 318
+ S T+ ++ F + A + W
Sbjct: 426 EPSVHTYNMLMMMFFEMGEAHRALDIW 452
>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 6/153 (3%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G A R D GI + YNVLL C+ S E + ++
Sbjct: 215 KIGRFEMAERFLKDMVERGIEPNVVTYNVLLNGV-CRRASLHPEGRFEKT-----IRHAE 268
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M ++P+ +F+ V + PE++ D +KQMK GI P + +Y +
Sbjct: 269 KVFDEMRKRGIEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCL 328
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
C G + + M SG+ P + K
Sbjct: 329 CSCGRLEDGENLIEEMVRSGISPSPTTYNCFFK 361
>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 58/112 (51%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F + DK +P+ +T++ R + A + +MK GI P + +Y + C+
Sbjct: 239 FFDSLKDKFEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCR 298
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
G +A++V A M ++G P ++L+++ V A + +KV ++ ++++ L
Sbjct: 299 CGQITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRL 350
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 16/122 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA R++ + + GI + + Y++++ C+CG + R
Sbjct: 263 RAGNISEAERVFGEMKVAGIKPNVYTYSIVIDSL-CRCGQ---------------ITRAH 306
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F +M+ PN T+ S+ R+ V E + QMK G P +Y +
Sbjct: 307 DVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIETH 366
Query: 236 CK 237
CK
Sbjct: 367 CK 368
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N + I MI V PN + S+ + D E A LV++MK+ G+ + +
Sbjct: 487 NGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVT 546
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
Y L G C+ D+A E+ + G+ P+ + ++ + DK E+L +
Sbjct: 547 YNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEM 605
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+G L D ++ G+ L L+ ++ G+ L + ++LL CK G
Sbjct: 297 PDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGL-CKDGK------ 349
Query: 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
+ + ++F+ ++ + P + ++ D AF + +QMKS I
Sbjct: 350 ---------VAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHI 400
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P +Y + G CKL KA ++ M +SGV P + L+ A +++K +
Sbjct: 401 RPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFT 460
Query: 282 ILHRLR 287
+L ++
Sbjct: 461 VLSDMQ 466
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 52/113 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ F IF+QM + + P+ T+ ++ E A DLV +M+ G+ P + ++
Sbjct: 385 LRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNT 444
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ + G +K + V + M + G+ + +++K K+ + IL
Sbjct: 445 LIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAIL 497
Score = 42.0 bits (97), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 20/192 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKR 173
K G + EA+ + DD + + YN ++ Y+ E+GD E +
Sbjct: 486 KNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYI----------ESGDTE--------Q 527
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ ++M V + T+ + + + A +L+ +++ G+ P + SY +
Sbjct: 528 ALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIIS 587
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
C G+TDKA E+ M + G+ P L+ A +V + + ++ +
Sbjct: 588 ACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEP 647
Query: 294 SESTFKIIEDWF 305
S S + I+ D +
Sbjct: 648 SSSIYGIMVDAY 659
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 52 ITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHK 110
++D++Q +D+ + G AF K + E+ A + A+ V
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQ------VYNSI 515
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D + GD +AL L + +++G++ S YN+LL K SS+ + E
Sbjct: 516 IDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLL-----KGLCRSSQIDEAE------ 564
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
E+ + + P+ ++ ++ K D + A +L+++M +GI P LR+
Sbjct: 565 -----ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRT 616
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
EIF+ M PN T+ + + A DL+ +MKS G+ P + S+G G
Sbjct: 490 MEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTG 549
Query: 235 FCKLGNTDKAYEV 247
FCK+G+ D AY++
Sbjct: 550 FCKIGDIDGAYQL 562
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 18/175 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKR 173
S++G + AL+L ++ NG + YN+++ +C C S++S
Sbjct: 376 SQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASH-------------- 421
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ I P+ T+ ++ + + A ++V +M S G+ P + +Y L
Sbjct: 422 ---LVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLN 478
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
G CK G +++ E+ M E G P + ++ AKKV++ ++L +++
Sbjct: 479 GLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKS 533
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVAR-LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+KR +++M + P + + + L +E E AF L ++M + G P +YG
Sbjct: 136 VKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYG 195
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CKLG +A E+ M E G+ P ++L+ + +D+ E+L +
Sbjct: 196 TLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEM 252
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 16/175 (9%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
+C V A RL+ + + G + Y L+ CK G +
Sbjct: 165 LCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGL-CKLGK---------------IS 208
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ E+ +M + P+ ++TS+ + + A +L+++M GI P + +Y +
Sbjct: 209 QAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLM 268
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
G CK G++ +A E+ M ++P S L+ K + EIL R+R
Sbjct: 269 DGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMR 323
Score = 45.4 bits (106), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 23/175 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G EA+ + D R G+ Y ++ C + + N
Sbjct: 308 KEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEAAN--------------- 352
Query: 176 EIFQQMITDKVDPNEATFT-------SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+M + PN A++T V + DP AF L M++ GI ++ ++
Sbjct: 353 -FIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTF 411
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ FCK G+ +KA + M G +P+E + L+ D KKV + E+L
Sbjct: 412 DCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRKKVRETTELL 466
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 16/144 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + +A L D+ G++ S Y L++ G S N L
Sbjct: 203 KLGKISQAKELLDEMEEKGLSPSVVSYTSLIH------GLCQSNN----------LDEAI 246
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ ++MI + ++PN T++S+ A +L++ M + P + +Y + G
Sbjct: 247 ELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGL 306
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
CK G +A E+ M G+ P+
Sbjct: 307 CKEGKHREAVEILDRMRLQGLKPD 330
>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 521
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD+ EA RL+ + G T S Y+V+++ + K +E +E + K+GF
Sbjct: 372 KDGDMVEARRLFREMAEKGATPSVLTYSVMIHGYAKKGRIREAERFRKEME-----KKGF 426
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
P+ T+ S+ ++A L ++MK G P + +Y + G
Sbjct: 427 V-----------PDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGL 475
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL-KLSVDAKKVDKV 279
K G ++ A+++ M ++G++P++ SAL+ L D +K KV
Sbjct: 476 AKEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKDVKV 520
Score = 42.7 bits (99), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 16/158 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V +A RL DD +G++L+ YN LL C ++G
Sbjct: 138 VDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLL-----DCYVRQKDDG--------- 183
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
R EI + M + ++ T+T + D L +MK+ + + Y
Sbjct: 184 --RVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTA 241
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ +C+ GN +A +V +GV P E L+K
Sbjct: 242 VINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIK 279
>gi|299473414|emb|CBN77812.2| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 1130
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178
DV ALRL ++ ++ GI++ Y + C CG D L L ++
Sbjct: 944 DVRTALRLLEEMKTKGISIDVVSYTSAI----CACGP----------DWLLAL----DVL 985
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
++M D V PN +FT+ E+P ++ +MK+ G+ P LR+Y A+
Sbjct: 986 EEMDKDGVAPNLLSFTAAMGACFKGEEPREVINVFNRMKAAGVAPDLRAYNLAIMAHDAD 1045
Query: 239 GNTDKAYEVDAHMGESGVVPEEPE 262
N ++A + E+G+ ++ E
Sbjct: 1046 ENHYGRASLEAELTEAGLSLQDKE 1069
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 111 LDMCSKRGDVFEALR-LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
+ C G F +R L D+ GI ++ HHY +C + E
Sbjct: 866 MKACDGEG-AFSIMRSLMDEMEQRGIPMTVHHYT------TCIDAANRME---------- 908
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
G G+E+++QM V+PN ++++ A D A L+++MK+ GI + SY
Sbjct: 909 GTGMGWELWRQMGVKGVEPNNYAYSAIITTAAIDRDVRTALRLLEEMKTKGISIDVVSYT 968
Query: 230 PALFGFCKLG-NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
A+ C G + A +V M + GV P +A + ++ +V + +R++
Sbjct: 969 SAI---CACGPDWLLALDVLEEMDKDGVAPNLLSFTAAMGACFKGEEPREVINVFNRMKA 1025
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 74/184 (40%), Gaps = 16/184 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V A +YDD R GI S YN LL VC + N R F+I
Sbjct: 698 GEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVC----------------EKNKEWDRAFKI 741
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+M + P+ +F + + A L+ +M+ GI P L+ + + G
Sbjct: 742 LDEMSELAIKPDIVSFGAAISACGKGLEWRRALALLVRMQHDGIEPNLQCFNNVIHGLGL 801
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G +A + + ++G+VP+ +++ A + D ++L + Q + T
Sbjct: 802 AGEWKRAEAMMEVIHKTGLVPDSYTYNSMAMAYASAGESDMALDVLDTMEKNGVQPDKVT 861
Query: 298 FKII 301
+ +
Sbjct: 862 YGTL 865
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV-ARLAVAKEDPEMAFDLVKQMKSFGI 221
R+ + +R E+ ++ +++ +E++F +V L A E ++AF + M+ GI
Sbjct: 657 RDAERGANWERSMELLREAQENELPISESSFQTVMTDLGFAGE-VDLAFSIYDDMRMAGI 715
Query: 222 PPKLRSYGPALFGFCKLGNT-DKAYEVDAHMGESGVVPE 259
PP L +Y L G C+ D+A+++ M E + P+
Sbjct: 716 PPSLDTYN-RLLGVCEKNKEWDRAFKILDEMSELAIKPD 753
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R E+ +++ +DP+E T+ S+ + A +L+ M+S P + SY L
Sbjct: 436 RALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIIL 495
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G CK+ + A EV A M E G P E L++
Sbjct: 496 LGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIE 531
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L EIF++++ D +P T+T + + ++A L+ +M S G+ P +Y
Sbjct: 189 LDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNA 248
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G CK DKA+E+ + G P+ + LL+
Sbjct: 249 IIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLR 286
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G ++ +MI+ PN T + + E A +L++ MK G+ P Y P +
Sbjct: 297 GEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIA 356
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
GFC+ G D A E +M G +P+ + ++ K D+ E+ +L
Sbjct: 357 GFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKL 409
>gi|224115776|ref|XP_002332054.1| predicted protein [Populus trichocarpa]
gi|222831940|gb|EEE70417.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 51/216 (23%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK-CGSESSENGDRENDS 167
H + SK G++F++LRLYD + G YN L+Y+ + + C E+ + D+ ++
Sbjct: 200 HMISCFSKVGNLFDSLRLYDGMKKRGWVPGIEVYNSLVYILTRENCFKEALKILDKMKET 259
Query: 168 NL------------------GLKRGFEIFQQMITDKVDPN-------------EATFTSV 196
L L+ + MI + V P E TF +
Sbjct: 260 GLQRDSATYNSMIRPLCEAKKLEDARSLMAAMIEENVSPTIETYHAFLQGIVFEETFEVL 319
Query: 197 ARLAVA------------------KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
R+ +A E PE A + +MK + + L Y + G +
Sbjct: 320 DRMKIAGLGPTEDTFLLLLAKFFKLEQPENALKIWVEMKQYEVASNLTHYTVMVEGLARC 379
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
G KA E A M +G ++P++ +LK+ V K
Sbjct: 380 GLLTKAREYYAEMRSNG-YSDDPKIQKMLKVPVQDK 414
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
++F+ +I P+ T+ S+ K + + A ++ K+M G P +Y L
Sbjct: 205 EAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVL 264
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G C++GN + E+ M E P+ +A++ + AKKVD +++L + +
Sbjct: 265 SGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAV 324
Query: 293 VSESTFKIIEDWF 305
T+ I+ D
Sbjct: 325 PDVVTYNILLDGL 337
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E++++M + P+ +V + + + A ++++M G P + +Y
Sbjct: 273 MARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNI 332
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL--RT 288
L G CK DKA+E+ + M ++G P+ S +L KV + R+ R
Sbjct: 333 LLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK 392
Query: 289 LVRQVSESTFKIIEDWF 305
LV V TF I+ D
Sbjct: 393 LVPDV--VTFNILMDGL 407
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%)
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M G P + +Y + G CK G +A E+ M E GV P+ + ++ A K
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 276 VDKVYEILHRL 286
VD+ E+ H++
Sbjct: 61 VDEADELFHKM 71
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 171 LKRGFEIFQQMITDK---VDPNEATF-TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
L G +FQ+M + K PN T+ V L AK+ E A +LV +M ++G+ P +
Sbjct: 317 LPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDE-AQELVNEMANYGLSPDVV 375
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+Y + G CKLG D+A ++ M + GV P+ +++L A KVD L +
Sbjct: 376 TYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETM 435
Query: 287 RT 288
+
Sbjct: 436 KA 437
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 96/229 (41%), Gaps = 25/229 (10%)
Query: 73 FSKKSTVNESSAPNTGTMS-NKSKKKARRESPEGVLRHKL---DMCSKRGDVFEALRLYD 128
F+ ++ + N G ++ K ++ RR P + + +C K G++ +A L
Sbjct: 39 FTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGLC-KAGELDKAKELLG 97
Query: 129 DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK-VD 187
R +G+ L+ Y+V++ C CK R +D+ EIF+ M
Sbjct: 98 QLRESGVKLNVITYSVVIDGC-CK--------ASRVDDA-------LEIFKTMSAGGGCV 141
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ TF S+ + + E AF L + M G P + SY L G CK G D+A +
Sbjct: 142 PDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAGRLDEACRL 201
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
M E V P+L A K ++V E R +V + S++
Sbjct: 202 WEEMVEKSCV---PDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKA 247
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 7/142 (4%)
Query: 151 CKCG-SESSENGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE---- 204
CK G +E ++N E+ G L + F++MI+ P+ F ++ AV K
Sbjct: 260 CKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIH-AVCKSKRLP 318
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
D + F +K MK F PP L +Y + CK D+A E+ M G+ P+ S
Sbjct: 319 DGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYS 378
Query: 265 ALLKLSVDAKKVDKVYEILHRL 286
AL+ K+D+ ++L +
Sbjct: 379 ALVDGLCKLGKLDRACDLLEEM 400
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R +++F QM++D + P++ T++ V + A ++++ M G P +YG
Sbjct: 517 VDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGT 576
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFCK GN DKA E+ + G P+ S +
Sbjct: 577 LIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFI 613
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Query: 171 LKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L ++F++M + P+ T++++ V + A LV+ M S G P + +Y
Sbjct: 200 LDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYS 259
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L G CK G D+A + M SG P + ++ ++D+ Y +L +
Sbjct: 260 SLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDG 319
Query: 290 VRQVSESTFKIIEDWFDSVDAAE--IGVLNWDVSK 322
Q + T+ ++ D F AE IG++ V K
Sbjct: 320 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK 354
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 16/172 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK + +A+RL ++ NG + YN +L+ C + EN
Sbjct: 55 SKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHG---FCKANRVENA------------- 98
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
+ +QM+ P+ ++T+V + + A ++ +M G P + +YG + G
Sbjct: 99 LWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDG 158
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
FC++G+ D A E+ M E G P + ++ +K+D ++ +
Sbjct: 159 FCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEM 210
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 66/172 (38%), Gaps = 16/172 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA L ++ G + Y VLL CKCG G
Sbjct: 302 KLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA-FCKCGKAEDAIG-------------- 346
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ + M+ PN T+ S+ + K++ E A L+ M G P + SY + G
Sbjct: 347 -LVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
CK + + M + VP+ + ++ +VD YE+ + ++
Sbjct: 406 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQ 457
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G + +QM+++ P+ TF ++ ++A++L ++ G P L +Y +
Sbjct: 414 GVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVH 473
Query: 234 GFCKLGNTDKA-YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
G CK D+A Y + + G P+ + ++ +K+VD+ Y++ ++ +
Sbjct: 474 GLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLA 533
Query: 293 VSESTFKII 301
+ T+ I+
Sbjct: 534 PDDVTYSIV 542
Score = 39.3 bits (90), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 6/153 (3%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M + P+ T+ ++ + + A L+++M G P + SY L GFCK
Sbjct: 33 FREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCK 91
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
+ A + M G P+ + ++ +VD+ ++ ++ Q + T
Sbjct: 92 ANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVIT 151
Query: 298 FKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
+ + D F +G L+ V VR+ RG
Sbjct: 152 YGTLVDGF-----CRVGDLDGAVELVRKMTERG 179
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYGPAL 232
+E+F + PN T+ S+ + A L+++M + G P + +Y +
Sbjct: 449 AYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVI 508
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G CK D+AY++ M G+ P++ S ++
Sbjct: 509 DGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVI 543
>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1072
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 21/163 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL---- 171
+ G + EAL L D+ + TL Q+ Y L++ K G + E+ G+
Sbjct: 872 RSGRLEEALSLLDEVGTERSTLDQYTYGTLVHGLLRK-GRQEEALAKIESMKEAGINPTV 930
Query: 172 ----------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
++ +IF++M D +P T++++ R + E + A+ ++
Sbjct: 931 HVYTSLIVHFFKEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNH 990
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+K G P ++Y + CK G +++A ++ + M E G+VP
Sbjct: 991 LKLKGPKPDFKTYSMFISCLCKAGKSEEALQLLSRMLEDGIVP 1033
Score = 43.1 bits (100), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 55/117 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ + ++ T++ ++ T+ ++ + K E A ++ MK GI P + Y
Sbjct: 876 LEEALSLLDEVGTERSTLDQYTYGTLVHGLLRKGRQEEALAKIESMKEAGINPTVHVYTS 935
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ F K +KA ++ M + G P SAL++ ++ ++ D + +L+ L+
Sbjct: 936 LIVHFFKEKQIEKAMQIFEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNHLK 992
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 72/190 (37%), Gaps = 16/190 (8%)
Query: 78 TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL 137
T SS G + + + R + V +D K G + A++L + NG+
Sbjct: 218 TTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV-- 275
Query: 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA 197
NV+ Y C S ++ F +F QM D N TFT +
Sbjct: 276 ---DPNVVSYSCIINSLCVSGN-----------VELAFALFAQMFLRGCDANIHTFTPLI 321
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
+ + A DL K M G P + +Y + G C G+ ++A +V M SG +
Sbjct: 322 KGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCL 381
Query: 258 PEEPELSALL 267
P S L+
Sbjct: 382 PNVTTYSILI 391
Score = 42.0 bits (97), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 24/236 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL--- 169
C RG ++EAL L+ +G + YN L++ +CS E+ + D+ S
Sbjct: 324 CFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPN 383
Query: 170 -----GLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
L GF E + +MI+ PN T+T + + + A LV+
Sbjct: 384 VTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVE 443
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+M G P ++ + G C G + A ++ M G +P + LL
Sbjct: 444 KMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMN 503
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K ++ + + + Q + T+ + F + G++ + + +VRG
Sbjct: 504 KYEEAFGLFQEIEARNLQPNLVTYNTVLYGF-----SRAGMMGEALQLFGKALVRG 554
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+F++M + P+ T++S+ A LV QM G+PP +R+Y L
Sbjct: 383 EAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSIL 442
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
CK+ DKA + + + G+ P S L+K + K++ ++ L
Sbjct: 443 DALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHN 502
Query: 293 VSESTFKIIEDWF 305
++ T+ I+ F
Sbjct: 503 LNVDTYTIMIQGF 515
Score = 47.0 bits (110), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K G +F M+ + PN T+ S+ ++ A + M G+ P ++SY
Sbjct: 311 MKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSI 370
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFCK+ D+A + M ++P+ S+L+
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLI 407
Score = 45.4 bits (106), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 16/151 (10%)
Query: 117 RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176
+G + +A +D + G Q Y L++ CK G + +
Sbjct: 168 KGQIQQAFLFHDKVVALGFHFDQISYGTLIHGL-CKVGET---------------RAALD 211
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ Q++ + V PN + ++ + AFDL +M S GI P + +Y + GFC
Sbjct: 212 LLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFC 271
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
LG + A ++ M + P+ + L+
Sbjct: 272 ILGKLNDAIDLFNKMILENIKPDVYTFNILV 302
>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
lyrata]
Length = 863
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 17/196 (8%)
Query: 111 LDMCSKRGDVFEALR-LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
++ C++ G +E L L+ + R GI YN LL C+ + + +E
Sbjct: 218 INACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE---------- 267
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+F+ M + P+ T++ + E DL+ +M S G P + SY
Sbjct: 268 ------MVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVSDLLSEMASGGSLPDITSYN 321
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L + K G+ +A V M +G P S LL L + + D V ++ +++
Sbjct: 322 VLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS 381
Query: 290 VRQVSESTFKIIEDWF 305
+T+ I+ + F
Sbjct: 382 NTDPDAATYNILIEVF 397
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/249 (22%), Positives = 97/249 (38%), Gaps = 19/249 (7%)
Query: 68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKL-DMCSKRGDVFEALRL 126
L +F ++T ES + ++ + K + P+ V + L + K G + EA++
Sbjct: 82 LSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSK--PDVVTYNVLINGICKEGRLDEAIKF 139
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
++ S G + +N++L S + R D+ ++ M+
Sbjct: 140 LNNMPSYGCQPNVITHNIIL---------RSMCSTGRWMDAE-------KLLSDMLRKGC 183
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
P+ TF + + A D++++M G P SY P L GFCK D+A E
Sbjct: 184 SPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIE 243
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD 306
M G P+ + LL KVD EIL++L + T+ + D
Sbjct: 244 YLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 303
Query: 307 SVDAAEIGV 315
V E +
Sbjct: 304 KVGKTERAI 312
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E M++ P+ T+ ++ ++A +++ Q+ S G P L +Y
Sbjct: 238 MDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNT 297
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G K+G T++A ++ M G+ P+ S+L+ KVD+ + H L L
Sbjct: 298 VIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGL 356
>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 178 FQQMITDKVDPNEATFT----SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
FQQM D P+ T+ V ++ V E A LVKQM+ FG + +Y ++
Sbjct: 77 FQQMSADNCKPDRFTYNMLIHGVCKIGVVDE----ALRLVKQMEGFGYSANVYTYTNLIY 132
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
GFC D+A+ V M V P E + +L+
Sbjct: 133 GFCNAKRVDEAFRVFETMKLRNVNPNEATIRSLV 166
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M+ + PN T+ + R D + L+K M+ GI P + S+ + FC+
Sbjct: 392 FSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFCR 451
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+G +KA ++ M G++P AL+K + + D+ ++ +
Sbjct: 452 MGKVEKAEKMFVSMSTLGLIPNNYTYGALVKALFELGRCDEAKKMFFSMEV 502
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 54/124 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF Q+ + P+ + +V V ++A+ +QM + P +Y + G
Sbjct: 40 EIFGQISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNMLIHGV 99
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK+G D+A + M G + L+ +AK+VD+ + + ++ +E
Sbjct: 100 CKIGVVDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEAFRVFETMKLRNVNPNE 159
Query: 296 STFK 299
+T +
Sbjct: 160 ATIR 163
>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
Length = 579
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 22/226 (9%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS----------ENGDRENDSNLG-- 170
A L+D+ G+ L H YN L+ C+ G +S +G N + G
Sbjct: 243 ARSLFDEMVKRGVELDVHVYNALIDAL-CRGGDITSAQEQLSNMQKSHGLVPNAATYGPF 301
Query: 171 ---------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221
++ + +M T + PN T+ +V RL + A++++ ++ + G
Sbjct: 302 LHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILDEITTQGE 361
Query: 222 PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281
P + SY L CKL +KA + + M + P+ + LLK+ + + D E
Sbjct: 362 KPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLISVGRFDTAIE 421
Query: 282 ILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGI 327
+ + +T+ ++ S ++ V V EGI
Sbjct: 422 VWDGMEKRGFHPGAATYAVMIHGLASKKGRAEDACSYFVRMVDEGI 467
>gi|215694797|dbj|BAG89988.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 930
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G V +A Y S + + +N L+ C E+G
Sbjct: 379 IDGCAKAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACG--------ESG--------A 422
Query: 171 LKRGFEIFQQMITDKVD--------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
+ R F++ +M + + P+ T ++ + + + A ++ K ++ + I
Sbjct: 423 VARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIK 482
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
Y AL G+ A ++ M + GV P+E LSAL+ ++ A++ D +EI
Sbjct: 483 GTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEI 542
Query: 283 LHRLRTLVRQV 293
+ R QV
Sbjct: 543 MKDARAKGYQV 553
Score = 45.4 bits (106), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L +C+ D AL++ + G+ Y L+ C+ KCG +
Sbjct: 309 LSVCANSQDFDGALQVMVLLKEAGLKPDCKLYTTLISTCA-KCGKVDAM----------- 356
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
FE+F +M++ ++PN T++++ AF M S + P R
Sbjct: 357 ----FEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAKAFGAYGIMSSKKVKPD-RVVFN 411
Query: 231 ALFGFC-KLGNTDKAYEVDAHM--------GESGVVPEEPELSALLKLSVDAKKVDKVYE 281
AL C + G +A++V + M G ++P+ + AL+K + A + D+ E
Sbjct: 412 ALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDHVTVGALMKTCIQAGQADRARE 471
Query: 282 ILHRLR 287
+ L+
Sbjct: 472 VYKMLQ 477
>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01400, mitochondrial; Flags: Precursor
gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
Length = 466
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ FE+F+ V PN ++ + + +D +A+ L +M + P + SY
Sbjct: 171 LQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKI 230
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GFC+ G + A E+ M G VP+ + LL ++ + Y++L R++
Sbjct: 231 LIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMK 287
Score = 39.3 bits (90), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 19/174 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVL---------LYVCSCKCGSESSENGDR 163
+ S RG + +A L+ +R +G+ + YN+L L + G +
Sbjct: 164 LVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVP 223
Query: 164 ENDSNLGLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
+ DS L +GF E+ M+ P+ ++T++ K A+ L+
Sbjct: 224 DVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLL 283
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+MK G P L Y + GFC+ A +V M +G P L+
Sbjct: 284 CRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLI 337
>gi|167997213|ref|XP_001751313.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697294|gb|EDQ83630.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 144
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
+ D G+ + +N+LL S R ND++ R E F+QM
Sbjct: 1 FQDMHGQGVQANTSTFNILLLGYS------------RVNDTD----RVMETFKQMEQYGW 44
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246
PN TF V R V A + +M FG P +Y + G CK G+ ++A+
Sbjct: 45 SPNAFTFKCVIRSLVWSGRALEALSIYPKMMEFGYVPDNFTYNGLIEGLCKAGHVNEAFV 104
Query: 247 VDAHMGESGVVPEEPELSALLKLSVDAK-KVDKVYEILHRL 286
+ M + G+ P+ +AL+K +D K ++D+ + +
Sbjct: 105 IFQEMEDRGLSPDAIAHAALIK-GLDTKGRIDEACRMFQEM 144
>gi|297839849|ref|XP_002887806.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333647|gb|EFH64065.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 541
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 20/174 (11%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168
H + SK G++F++LRLYD+ + G+ YN LLYV + REN +
Sbjct: 293 HMISCFSKVGNLFDSLRLYDEMKKRGLAPGIVVYNSLLYVLT------------RENCFH 340
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+K + ++M + + P T+ S+ R ++A +++ M S + P + ++
Sbjct: 341 EAMK----LLEKMDEEGLKPGSVTYNSMIRPLCEAGKLDVARNVLATMISENLSPTVDTF 396
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
F + N D EV M SG+ P E +L K+ + +I
Sbjct: 397 ----HAFLEAVNFDTNLEVLGQMKVSGLGPTEDTFLLILGKLFKGKQPENALKI 446
>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
Length = 1070
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ G+ IF QM + P+E T+ S+ ++DP+ A DL+++M++ G PP +++
Sbjct: 491 LEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTE 550
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ C G +A + M + G +P+ SA + + +VD + LH R +
Sbjct: 551 MVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVD---DALHLFRDI 606
Score = 38.9 bits (89), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 49/242 (20%)
Query: 123 ALRLYDDARSN-GITLSQHHYNVLLYVCS----------------CKCGSESSE------ 159
A+R +D AR++ G T + + YN LL + +CG S +
Sbjct: 157 AVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLREMVARCGDGSVDKYTLTS 216
Query: 160 ------NGDRENDSNLGLKRGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDL 212
N R +D+N ++FQ+M VD + T VA K D A +L
Sbjct: 217 LLRCYCNAGRPDDAN-------DVFQRMSELGWVDEHVLTTLMVAFSKWGKVDG--AVEL 267
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
+ M++ G+ ++ + GF K G DKA ++ A M G V + S L++
Sbjct: 268 LGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQ 327
Query: 273 AKKVDKVYEILHRLRTL-----VRQVSESTFKIIEDWFDSVDAAEIG-VLNWDVSKVREG 326
K + + ++ +++ VR + K+IE + D A IG +N + ++ G
Sbjct: 328 QKDIARAVKLFKEMKSSGVAPDVRLLK----KVIEAFCREGDFAVIGPFINENAEYLKSG 383
Query: 327 IV 328
V
Sbjct: 384 SV 385
>gi|449483905|ref|XP_004156728.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Cucumis sativus]
Length = 636
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
LY++ G+ + + +N+L YV C+ G + NG ++M +
Sbjct: 247 LYEEMGRIGVHSNAYTFNILTYVL-CRDGDVNKING---------------FLEKMEEEG 290
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
DP+ T+ ++ V + E AF L K M G+ P L SY + G C+LG +A+
Sbjct: 291 FDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAH 350
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++ M + G+ P+ + L+ + + +LH +
Sbjct: 351 QLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEM 391
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 80/186 (43%), Gaps = 16/186 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G E +L+ + + G+ L YN ++ CK G + + +
Sbjct: 599 KAGFSRETYKLFYEMKEQGLHLDVLAYNTVID-GFCKSGK---------------VDKAY 642
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ ++M T + P T+ SV + + A+ L ++ KS G+ + Y + GF
Sbjct: 643 QLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGF 702
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
K+G D+AY + + + G+ P + LL V A+++D+ ++ L +
Sbjct: 703 GKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNA 762
Query: 296 STFKII 301
T+ I+
Sbjct: 763 MTYSIM 768
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 24/203 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC----KCGSESSENGDREND 166
+D +RG V +A LY+ S NV++Y KCG R+ D
Sbjct: 489 IDGLGRRGRVDDAYSLYEKMLD-----SDQIPNVVVYTSLIQNFFKCG--------RKED 535
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
G +I+++M+ P+ S + E L +++K+ G+ P +R
Sbjct: 536 -------GHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVR 588
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
SY + G K G + + Y++ M E G+ + + ++ + KVDK Y++L +
Sbjct: 589 SYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEM 648
Query: 287 RTLVRQVSESTFKIIEDWFDSVD 309
+T Q + T+ + D +D
Sbjct: 649 KTKGLQPTVVTYGSVVDGLAKID 671
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F QM + N FT++ R+ + + A L+ +MKS L Y + F
Sbjct: 225 LFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFG 284
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K+G D A++ M G+VP++ + L+ + A+++D+ E+ L
Sbjct: 285 KVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEEL 334
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 83/197 (42%), Gaps = 6/197 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++G +F+++ + P+ +++ + V + L +MK G+ + +Y
Sbjct: 568 VEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNT 627
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFCK G DKAY++ M G+ P +++ ++D+ Y + +++
Sbjct: 628 VIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIG 687
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERT 350
++ + + D F V + L + E +++ G + W V+
Sbjct: 688 VDLNVVIYSSLIDGFGKVGRIDEAYL------ILEELMQKGLTPNSYTWNCLLDALVKAE 741
Query: 351 QIDENGVCCSCNERLVC 367
+IDE VC + L C
Sbjct: 742 EIDEAQVCFQNMKNLKC 758
Score = 39.3 bits (90), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 87/216 (40%), Gaps = 20/216 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + EA + ++ G+T + + +N LL ++ + +++ +
Sbjct: 699 IDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLL---------DALVKAEEIDEAQV- 748
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
FQ M K PN T++ + AF ++M+ G+ P +Y
Sbjct: 749 ------CFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTT 802
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K GN +A + SG VP+ +A+++ A K Y + R
Sbjct: 803 MIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKG 862
Query: 291 RQVSESTFKIIEDWFDSVD----AAEIGVLNWDVSK 322
+V+ T ++ D D AA +G + +++K
Sbjct: 863 CRVNSKTCVVLLDALHKADCLEQAAIVGAVLREMAK 898
Score = 39.3 bits (90), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
++ G + AL L D+ +SN T YNV + C K G +
Sbjct: 249 AREGRIDAALSLLDEMKSNSFTADLVLYNVCID-CFGKVGK---------------VDMA 292
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ F +M + P++ T+T++ + + A +L +++ P + +Y + G
Sbjct: 293 WKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMG 352
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G D+AY + G +P + +L KV++ I +R
Sbjct: 353 YGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR 405
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 23/216 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS---------ESSENG 161
+D +K + EA+ L + +NG T + YN LL CK G + +NG
Sbjct: 41 VDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNG-LCKMGRLEEAIDLLRKIVDNG 99
Query: 162 ---DRENDSNL--GL---KRGFE---IFQQMITDKVDPNEATFTSVAR-LAVAKEDPEMA 209
D ++L GL KR FE +F++M + + + +T++ R L A + P+ A
Sbjct: 100 CTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQ-A 158
Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
+ K M S G P + + + G CK G A + M G+ P E SAL+
Sbjct: 159 SSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG 218
Query: 270 SVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305
A+K+D E+L +++ T+ I+ D
Sbjct: 219 LCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 254
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 17/177 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GDV A +D+ G + YN+L+ CK G+ + G
Sbjct: 251 IDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISG-FCKAGNTDAACG--------- 300
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+F M + + PN T+ ++ + A + MK G PP Y
Sbjct: 301 ------VFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSS 354
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK G + + M SGV + + L A +VD+ + + +R
Sbjct: 355 LVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHL-CKANRVDEAVSLFNAIR 410
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Query: 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREND 166
L +D K G + A+R++ + G+ ++ Y+ L++ CK R+ D
Sbjct: 177 LSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHG-LCK---------ARKMD 226
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
L E+ QM P+ T+ + D A +M G P +
Sbjct: 227 CAL------EMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVY 280
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+Y + GFCK GNTD A V M S P
Sbjct: 281 TYNILISGFCKAGNTDAACGVFDDMSSSRCSP 312
>gi|449450197|ref|XP_004142850.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g40400-like [Cucumis sativus]
Length = 632
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 16/161 (9%)
Query: 126 LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
LY++ G+ + + +N+L YV C+ G + NG ++M +
Sbjct: 243 LYEEMGRIGVHSNAYTFNILTYVL-CRDGDVNKING---------------FLEKMEEEG 286
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
DP+ T+ ++ V + E AF L K M G+ P L SY + G C+LG +A+
Sbjct: 287 FDPDVVTYNTLIDSYVRRGRLEDAFYLYKIMYRRGVMPDLVSYTSLMRGLCRLGRVREAH 346
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++ M + G+ P+ + L+ + + +LH +
Sbjct: 347 QLFHRMIDRGMDPDVVLYNTLIGAYCKDGMLQEARSLLHEM 387
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 20/172 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G V EA RL+D GI + N V C S S D E
Sbjct: 447 GHVSEAFRLWDVMIEKGIKPTLVTCNT---VIKGYCRSGDSSKAD-------------EF 490
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+MI V P+ ++ ++ V +++ + AF + +M+ G+ P + +Y + GFC+
Sbjct: 491 LGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCR 550
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY----EILHR 285
G +A V M E G+ P+ +AL+ V +++ + E+L R
Sbjct: 551 QGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQR 602
Score = 47.4 bits (111), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 16/167 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EAL++ D+ G L YN +L + C + + D+
Sbjct: 305 RNGNMLEALKIRDEMLEQGCVLDVIAYNTIL---NGLCKEKMLTDADK------------ 349
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F +M+ P+ TFT++ + A L M I P + +Y + GF
Sbjct: 350 -LFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGF 408
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
CK+G +KA E+ M + P L+ V + + +
Sbjct: 409 CKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRL 455
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ E++ MI+ K+ PN T+ + + AF L M GI P L +
Sbjct: 414 MEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNT 473
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ G+C+ G++ KA E M GV P+ + L+ V +DK +
Sbjct: 474 VIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAF 523
Score = 45.8 bits (107), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
EIF +M+ V P+ +F+S+ + + A + MK FG+ P Y + G+
Sbjct: 244 EIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY 303
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL------KLSVDAKKV 276
C+ GN +A ++ M E G V + + +L K+ DA K+
Sbjct: 304 CRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKL 350
>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g13040, mitochondrial; Flags: Precursor
gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ + +F++M + N T+TS+ + + + + +A L+ QM G+ P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
L CK GN DKAY V M E + P+ ++L+ + +V + ++ ++
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKEC 461
Query: 292 QVSESTFKII 301
E TFK I
Sbjct: 462 CPDELTFKFI 471
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
+A RL+++ R G+ ++ Y L+ + RE +S++ K + QM
Sbjct: 343 KAYRLFEEMRQKGMVMNVVTYTSLI------------KAFLREGNSSVAKK----LLDQM 386
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ P+ +T++ + + A+ + M I P SY + G C+ G
Sbjct: 387 TELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRV 446
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR----TLVRQVSEST 297
+A ++ M P+E ++ + KK+ Y++ ++ TL R VS++
Sbjct: 447 TEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTL 506
Query: 298 FK 299
K
Sbjct: 507 IK 508
Score = 39.7 bits (91), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 176 EIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYGPALF 233
EI+ MI V P N+A V L A++ ++A+++V +++KS + Y +
Sbjct: 170 EIWNAMIRSGVSPDNKACAALVVGLCHARK-VDLAYEMVAEEIKSARVKLSTVVYNALIS 228
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
GFCK G +KA + ++M + G P+ + LL D
Sbjct: 229 GFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYD 267
>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 344
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+E++ +MI +K+ P+ ATF S+ + AF L QM I P + ++ +
Sbjct: 36 AYELYSEMIAEKISPDVATFNSLIYGFCIIGQLKDAFGLFSQMVLKNINPSVYTFTILVD 95
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ- 292
G CK G +A V A M + GV+P +++++ +V+K H RT+ R
Sbjct: 96 GLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTK---HVFRTISRMG 152
Query: 293 VSEST--FKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
V+ +T + I+ + F +I ++N + +E RG
Sbjct: 153 VAPNTQSYNIMINGF-----CKIKIVNEALILFKEMCCRG 187
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K + M+ D V PN T+TS+ + + + + G+ P +SY
Sbjct: 103 MKEAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNI 162
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ GFCK+ ++A + M G+VP S+L+
Sbjct: 163 MINGFCKIKIVNEALILFKEMCCRGIVPITVTYSSLI 199
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK F +F QM+ ++P+ TFT + + + A ++ M G+ P + +Y
Sbjct: 68 LKDAFGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTS 127
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G+C + +K V + GV P
Sbjct: 128 IMEGYCLVNEVNKTKHVFRTISRMGVAP 155
>gi|302769928|ref|XP_002968383.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
gi|300164027|gb|EFJ30637.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
Length = 532
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
CSK V + L++Y D G T + YN LL C S+ + RE ++ +
Sbjct: 360 CSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRILA 419
Query: 174 GFEIFQQ--MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
G E+ + + ++ V P+ + ++ R + P+ A ++++M S G+ P RS+
Sbjct: 420 GIEVQDESVIFSEWVRPDSVAYNTMMR--ACDKLPKQAEAVMQEMVSSGLRPDKRSWCIL 477
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+ + G+ A + MG+SG++ + +A++K+ +K ++ HR
Sbjct: 478 INSYGCNGDKQGAVQAFQRMGKSGIIADVVAYTAIIKVRFKSKISFVLHVFCHR 531
Score = 43.1 bits (100), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 74/172 (43%), Gaps = 18/172 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C + GD +A +++ G L+ +YVC+ S N N
Sbjct: 219 IDACGRCGDTEKATAIFEGLLKAGTVLN-------VYVCN------SMMNAHAGN----- 260
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ +++QM + + T+ V + ++P +A L +++K+ I + SYG
Sbjct: 261 IQHVLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKLNVLSYGT 320
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
+ F + D+ +++ M +G+VP ++L+ V+K ++
Sbjct: 321 LIQIFGEAKMLDRVFQMKRDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQV 372
>gi|255543335|ref|XP_002512730.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547741|gb|EEF49233.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 552
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 94/247 (38%), Gaps = 62/247 (25%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK-CGSESSENGDRENDS 167
H + SK G++F++LRLYD+ + G YN L+YV + + C E+ D+ +
Sbjct: 299 HMISCFSKVGNLFDSLRLYDEMKKRGWLPGMEVYNSLIYVLTRENCFKEALRFLDKMKEV 358
Query: 168 NL------------------GLKRGFEIFQQMITDKVDPN---------------EATFT 194
L L + MI + + P EAT
Sbjct: 359 GLQPDSTTYNSMIRPLCEGKKLVEARSVLATMIEENISPTMETYHALLEVENSDFEATLE 418
Query: 195 SVARLAVAK------------------EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ R+ VA E E A + +MK + + P L Y + G
Sbjct: 419 VLNRMTVAGLAPTDDTFLLVLAKFFKLEQAENALKMWIEMKQYEVTPNLTHYKILVEGLV 478
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK---------KVDKVYEILHRLR 287
+ G KA E A M +G ++P+L +LK V + +V + + H+ R
Sbjct: 479 RCGLLAKARECYADMRSNGFT-DDPKLQKMLKEPVRGQNSKEKLCKGQVKRDGHVNHKRR 537
Query: 288 TLVRQVS 294
++VR+ S
Sbjct: 538 SIVRRKS 544
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 72/190 (37%), Gaps = 16/190 (8%)
Query: 78 TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL 137
T SS G + + + R + V +D K G + A++L + NG+
Sbjct: 218 TTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV-- 275
Query: 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA 197
NV+ Y C S ++ F +F QM D N TFT +
Sbjct: 276 ---DPNVVSYSCIINSLCVSGN-----------VELAFALFAQMFLRGCDANIHTFTPLI 321
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
+ + A DL K M G P + +Y + G C G+ ++A +V M SG +
Sbjct: 322 KGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCL 381
Query: 258 PEEPELSALL 267
P S L+
Sbjct: 382 PNVTTYSILI 391
Score = 42.4 bits (98), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 91/236 (38%), Gaps = 24/236 (10%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL--- 169
C RG ++EAL L+ +G + YN L++ +CS E+ + D+ S
Sbjct: 324 CFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPN 383
Query: 170 -----GLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
L GF E + +MI+ PN T+T + + + A LV+
Sbjct: 384 VTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVE 443
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
+M G P ++ + G C G + A ++ M G +P + LL
Sbjct: 444 KMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMN 503
Query: 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K ++ + + + Q + T+ + F + G++ + + +VRG
Sbjct: 504 KYEEAFGLFQEIEARNLQPNLVTYNTVLYGF-----SRAGMMGEALQLFGKALVRG 554
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 173 RGFEIFQQMITDKVDPNEATFTS-VARLAVAKE--DPEMAFDLVKQMKSFGIPPKLRSYG 229
+G E+F +M D++ P+ + + L K D E FD +M + + P L +Y
Sbjct: 197 KGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFD---EMLARRLLPSLITYN 253
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+CK GN +K+++V M + P + LLK A V+ +L ++ L
Sbjct: 254 TLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDL 313
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVS 321
TF I+ D + S + AE + ++ +
Sbjct: 314 GFVPDAFTFSILFDGYSSNEKAEAALGVYETA 345
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLY-VC-------SCKCGSESSENGDREN--DSNL 169
V +A++L D+ R G T YNVL+ +C + K ++ +G + N N+
Sbjct: 255 VGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNI 314
Query: 170 GLKR---------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
L+ ++ M+ P+ TF + K A D++++M G
Sbjct: 315 ILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG 374
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
P SY P L GFCK D+A E M G P+ + +L KV+
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAV 434
Query: 281 EILHRL 286
EIL++L
Sbjct: 435 EILNQL 440
Score = 45.1 bits (105), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E ++M++ P+ T+ ++ E A +++ Q+ S G P L +Y
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K G T KA ++ M + P+ S+L+ KVD+ + H +
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514
Query: 291 RQVSESTFKII 301
+ + TF I
Sbjct: 515 VRPNAVTFNSI 525
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK+ E+ +M+ P+ T+T + A L+ +M+ G P + +Y
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNV 279
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G CK G D+A + M SG P
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQP 307
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K G++ EA+R Y GI+ + +N L+Y CK G
Sbjct: 514 IDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIY-GFCKKGK--------------- 557
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ + + P T+T++ + D FD++ +M++ I P +Y
Sbjct: 558 LAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTV 617
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G ++ ++ +M G+ P++ + +++ A + K +++ +++
Sbjct: 618 VVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHS 677
Query: 291 RQVSESTFKII 301
Q S T+ ++
Sbjct: 678 LQPSPVTYNVL 688
Score = 46.6 bits (109), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + EA++L D + +G+ + Y L+ + E GD + F
Sbjct: 554 KKGKLAEAVKLLDTIKVHGLVPTSVTYTTLM--------NGYCEEGD--------MHSMF 597
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ +M + P + T+T V + + + L+K M + G+ P +Y + F
Sbjct: 598 DMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSF 657
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK + KA+++ M + + P + L+
Sbjct: 658 CKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLI 689
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 109/247 (44%), Gaps = 34/247 (13%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG-FE 176
G + EAL +D ++G+ YN+L NG R LGL G ++
Sbjct: 319 GSMEEALEFTNDMENHGVEPDIVTYNIL-------------ANGFRI----LGLISGAWK 361
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ Q+M+ + ++P+ T+T + + E +F L ++M S G+ + +Y L C
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC 421
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G D+A + + E V+ +P+L L+ V++ E+ + + +++ +
Sbjct: 422 KSGRIDEAVIL---LHEMEVIGLKPDL-----LTYSRGAVEEAIELYEEMCS--KRIYPN 471
Query: 297 TF---KIIEDWFD--SVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGS-GKWRVERT 350
+F II F+ ++ A++ + S V E I+ G LG+ G+
Sbjct: 472 SFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYK 531
Query: 351 QIDENGV 357
QI E G+
Sbjct: 532 QIIEKGI 538
Score = 39.7 bits (91), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V A + G+ + YN+LL+ C GS ++
Sbjct: 282 KMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGL-CVAGS---------------MEEAL 325
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E M V+P+ T+ +A A+ +V++M G+ P L +Y + G
Sbjct: 326 EFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGH 385
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
C++GN ++++++ M G+ + LL + ++D+ +LH + +
Sbjct: 386 CQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVI 439
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ MI PN TF ++ K E A +L+KQM G P L SY + G
Sbjct: 419 ELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGL 478
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
K G T++A E+ M G+ P S++ + DK+ ++ ++
Sbjct: 479 GKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQ 530
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 51/116 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E+ +QM+ P+ T+T+V + + A L+K M + G P SY
Sbjct: 344 VDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTI 403
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G C+ A E+ +HM + G +P + L+ ++ E+L ++
Sbjct: 404 VLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQM 459
Score = 43.9 bits (102), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNL 169
L+ + G A+R + G TL + N+++ +C C E
Sbjct: 150 LEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDE------------- 196
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVAR-LAVAK---EDPEMAFDLVK------QMKSF 219
G E+ +++ + +P+ ++ +V + L +AK + E+ ++V+ QM
Sbjct: 197 ----GVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEH 252
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
G P LR Y + G CK G+ + A ++ + M G+ P + +LK A++ ++
Sbjct: 253 GCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEA 312
Query: 280 YEILHRLRTLVRQVSESTFKIIEDWF 305
++L + + + TF I+ D+F
Sbjct: 313 EDLLAEMFQEDCPLDDVTFNILVDFF 338
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ-MKSFGIPPKLRSYG 229
+ ++ F MI + +P+ FT++ P++ L+ Q +K F P + Y
Sbjct: 71 MDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF--RPDVFLYT 128
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G+CK G+ D +++ M +G +P+ L+ +VD+ YE+ R+R
Sbjct: 129 SVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMR 186
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F+QM+ P+ T+T++ + A L+ M + G P +YG + GF
Sbjct: 454 KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGF 513
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CKL ++A EV A M E G P ++LL + + ++ Y++L +
Sbjct: 514 CKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEM 564
Score = 48.5 bits (114), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 19/188 (10%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V +A +YD ++GI + +NVL++ D + D R F +F+
Sbjct: 659 VDQAFGVYDRMVASGIKPNAVTFNVLMH----------GLFKDGKTD------RAFSLFK 702
Query: 180 QMI-TDKVDPNEATFTS-VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+M+ D+V P ++T + L A E AF ++M GI P+ +Y ++ K
Sbjct: 703 EMLEKDEVPPTLVSYTILIDGLGKAGRVSE-AFSQFQEMIDRGIIPECHTYTSLIYSLAK 761
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G +A ++ M + GV P+ SAL+ +D+ VD +++ + +E T
Sbjct: 762 AGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVT 821
Query: 298 FKIIEDWF 305
+K++ F
Sbjct: 822 YKVLRRGF 829
Score = 43.9 bits (102), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 59/130 (45%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+ +++ +M P+ +TS+ L + A + M G P +YG
Sbjct: 555 EEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTI 614
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ F K+GN + A E+ M +SGV P+ ++L+ V ++VD+ + + R+
Sbjct: 615 IQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGI 674
Query: 292 QVSESTFKII 301
+ + TF ++
Sbjct: 675 KPNAVTFNVL 684
Score = 41.6 bits (96), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 21/199 (10%)
Query: 94 SKKKARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
++ AR +P+ +L L D+ G V EA ++D G Y ++
Sbjct: 562 TEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTII------ 615
Query: 153 CGSESSENGDRENDSNLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+N S +G ++ EI + M V P+ + S+ V E + AF
Sbjct: 616 -----------QNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFG 664
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
+ +M + GI P ++ + G K G TD+A+ + M E VP P L + L
Sbjct: 665 VYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVP--PTLVSYTILID 722
Query: 272 DAKKVDKVYEILHRLRTLV 290
K +V E + + ++
Sbjct: 723 GLGKAGRVSEAFSQFQEMI 741
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ +TSV D + F ++++M + G P +Y + CKLG D+AYE+
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYEL 181
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
M +SG + + L++ + K+D+ E+ +
Sbjct: 182 FERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREM 220
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/191 (19%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K G++ EA+R Y GI+ + +N L+Y CK G
Sbjct: 522 IDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIY-GFCKKGK--------------- 565
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ + + P T+T++ + D FD++ +M++ I P +Y
Sbjct: 566 LAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTV 625
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G ++ ++ +M G+ P++ + +++ A + K +++ +++
Sbjct: 626 VVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHS 685
Query: 291 RQVSESTFKII 301
Q S T+ ++
Sbjct: 686 LQPSPVTYNVL 696
Score = 46.6 bits (109), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+G + EA++L D + +G+ + Y L+ + E GD + F
Sbjct: 562 KKGKLAEAVKLLDTIKVHGLVPTSVTYTTLM--------NGYCEEGD--------MHSMF 605
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ +M + P + T+T V + + + L+K M + G+ P +Y + F
Sbjct: 606 DMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSF 665
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK + KA+++ M + + P + L+
Sbjct: 666 CKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLI 697
Score = 45.1 bits (105), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 107/247 (43%), Gaps = 26/247 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG-FE 176
G + EAL +D ++G+ YN+L NG R LGL G ++
Sbjct: 319 GSMEEALEFTNDMENHGVEPDIVTYNIL-------------ANGFRI----LGLISGAWK 361
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ Q+M+ + ++P+ T+T + + E +F L ++M S G+ + +Y L C
Sbjct: 362 VVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLC 421
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296
K G D+A + M G+ P+ S L+ V++ E+ + + +++ +
Sbjct: 422 KSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCS--KRIYPN 479
Query: 297 TF---KIIEDWFD--SVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGS-GKWRVERT 350
+F II F+ ++ A++ + S V E I+ G LG+ G+
Sbjct: 480 SFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYK 539
Query: 351 QIDENGV 357
QI E G+
Sbjct: 540 QIIEKGI 546
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 16/174 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V A + G+ + YN+LL+ C GS ++
Sbjct: 282 KMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGL-CVAGS---------------MEEAL 325
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E M V+P+ T+ +A A+ +V++M G+ P L +Y + G
Sbjct: 326 EFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGH 385
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
C++GN ++++++ M G+ + LL + ++D+ +LH + +
Sbjct: 386 CQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVI 439
>gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1129
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 27/183 (14%)
Query: 111 LDMCSKRGD---VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS 167
+ +CS D FE LRL A+ G+ Y L+ C+ K G
Sbjct: 513 MSVCSSSQDSDGAFEVLRL---AQGAGLKADCKLYTTLISTCA-KSGK------------ 556
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
+ FE+F +M+ V+PN T+ S+ AF ++S + P
Sbjct: 557 ---VDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAKAFGAYGILRSKNVKPDRVV 613
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVDK---VYEI 282
+ + + G D+A++V A MG + P+ + AL+K A +VD+ VY +
Sbjct: 614 FNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGALMKACAKAGQVDRAKEVYNM 673
Query: 283 LHR 285
LH+
Sbjct: 674 LHK 676
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 77/181 (42%), Gaps = 20/181 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C+K G + +A Y RS + + +N L+ C ++G
Sbjct: 583 IDGCAKAGQMAKAFGAYGILRSKNVKPDRVVFNALITACG--------QSG--------A 626
Query: 171 LKRGFEIFQQM--ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M T +DP+ T ++ + + A ++ + + I Y
Sbjct: 627 VDRAFDVLAEMGAETHPIDPDHITVGALMKACAKAGQVDRAKEVYNMLHKYNIKGTPEVY 686
Query: 229 GPALFGFC-KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
A+ FC + G+ + A V M GV P+E LSAL+ ++ A VD +E L R
Sbjct: 687 TIAV-NFCSQTGDWEFARSVYDDMTRKGVAPDEMFLSALVDVAGHAGLVDIAFETLQEAR 745
Query: 288 T 288
T
Sbjct: 746 T 746
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
+N+L+ VCS SS++ D FE+ + + + +T++
Sbjct: 509 FNMLMSVCS------SSQDSDG----------AFEVLRLAQGAGLKADCKLYTTLISTCA 552
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ F++ +M + G+ P + +YG + G K G KA+ + V P+
Sbjct: 553 KSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAKAFGAYGILRSKNVKPDRV 612
Query: 262 ELSALLKLSVDAKKVDKVYEILHRL 286
+AL+ + VD+ +++L +
Sbjct: 613 VFNALITACGQSGAVDRAFDVLAEM 637
>gi|125526112|gb|EAY74226.1| hypothetical protein OsI_02107 [Oryza sativa Indica Group]
Length = 540
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 16/169 (9%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A ++ D+ R +GI + Y+++L N +++ ++ + +FQ+M
Sbjct: 383 AFKMVDEMRKSGIGPNTRTYDIIL-------------NHLIKSEK---IEEAYNLFQRME 426
Query: 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242
D +P T+T + + + E +MA + KQMK G+ P + + + G C +
Sbjct: 427 RDGCEPELNTYTMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALINGLCFDNRLE 486
Query: 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+A M + G+ P S L + V+ ++ E+ RL L R
Sbjct: 487 EACVYFQEMLDKGIRPPGQLFSNLKEALVEGGRITLAQEVTQRLEMLRR 535
Score = 46.2 bits (108), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
L F++ +M + PN T+ + + E E A++L ++M+ G P+L +Y
Sbjct: 378 LEFHHAFKMVDEMRKSGIGPNTRTYDIILNHLIKSEKIEEAYNLFQRMERDGCEPELNTY 437
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+ FC D A +V M E GV+P SAL+
Sbjct: 438 TMMVGMFCSNERVDMALKVWKQMKEKGVLPCMHMFSALI 476
Score = 43.1 bits (100), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V EA+ ++ S G+ YN L+ + S + +K+ IF+
Sbjct: 204 VKEAVETFEKMSSFGLKTDLSDYNWLIDILS----------------KSKQVKKAHAIFK 247
Query: 180 QMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+M + P+ T+T + ++D M + ++M GI P + +YG + FCK
Sbjct: 248 EMKRKGRFIPDLKTYTVLMEGWGHEKDLLMLKAVYQEMLDAGIKPDVVAYGMLISAFCKS 307
Query: 239 GNTDKAYEVDAHMGESGVVP 258
G D+A +V M ESG +P
Sbjct: 308 GKCDEAIKVFHEMEESGCMP 327
>gi|412992186|emb|CCO19899.1| predicted protein [Bathycoccus prasinos]
Length = 871
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 10/170 (5%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG-DRENDS-NLGLKRGFEIFQQ 180
A+R+ +D G TLS ++ LL K + G DR+ S L R +F++
Sbjct: 366 AMRVKEDIEEQGWTLSPKVFDQLL-----KLTIDVDMPGEDRKGRSPKARLVRACVLFEE 420
Query: 181 MIT-DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
M + V+P+ F ++ A ++P++ +M S G+ P + AL + G
Sbjct: 421 MTSKSNVEPSPVAFNALLVGAARAKEPQLVAQTFDEMTSQGVSPSRETCEIALKALAEGG 480
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK--KVDKVYEILHRLR 287
K+ V A M + G+ P + +AL+ AK K D+ +EI +RLR
Sbjct: 481 ELAKSLNVFAVMRQRGLAPRKSTYTALILSCAKAKEPKCDEAFEIFYRLR 530
Score = 40.0 bits (92), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 15/119 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L ++ G++ ++L ++ R G+ + Y L+ C+ + E
Sbjct: 473 LKALAEGGELAKSLNVFAVMRQRGLAPRKSTYTALILSCAKAKEPKCDE----------- 521
Query: 171 LKRGFEIFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
FEIF ++ + V+PN A F ++ A+ AFD MK IPP + +Y
Sbjct: 522 ---AFEIFYRLREEGSVEPNRAMFAALIDCAIRAGKESYAFDAFDAMKEANIPPTMATY 577
>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g61400-like [Glycine max]
Length = 498
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDS-------- 167
K GD+ EA+ L + GI YN+L+ C E + + D
Sbjct: 182 KAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSV 241
Query: 168 ----------NLG-LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
+G +++ E+ QM + ++PN TF+ + K + A L +M
Sbjct: 242 XFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEM 301
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK-LSVDAKK 275
GI P + +Y + G CK+GNT +A+ + M ++G+ P +S ++ L D +
Sbjct: 302 VIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRT 361
Query: 276 VDKVYEILHR 285
D + L +
Sbjct: 362 NDAIKMFLEK 371
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 39/231 (16%)
Query: 98 ARRESPE----GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKC 153
+RR SP G+L ++ C +GD A +++D+ GI NV++Y
Sbjct: 32 SRRFSPTVITYGIL---MNCCCAQGDFSNAQKVFDEMLERGI-----EPNVVIY------ 77
Query: 154 GSESSENGD----REND----------------SNLG-LKRGFEIFQQMITDKVDPNEAT 192
G G RE+ S +G +KR F ++ M+ + P+ T
Sbjct: 78 GQMGEAEGVFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGLYPDVVT 137
Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
F ++ + D + A + M F + P +Y + G+CK G+ +A + M
Sbjct: 138 FATLIDVLRKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLEME 197
Query: 253 ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
G+ + + L+K D ++++ ++ ++ + + F ++ D
Sbjct: 198 RCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVXFNVVID 248
>gi|255575578|ref|XP_002528689.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531861|gb|EEF33678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 271
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P+ TF+ V R + D + A ++ +M G+ P + ++ + FCK G KAYEV
Sbjct: 120 PDSWTFSIVIRCHCKRNDADEAKRVLDRMLENGLNPNVVTFTTLINSFCKKGKLQKAYEV 179
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDS 307
M G P + LLK KV++ YEIL ++ + T+ + D F
Sbjct: 180 IDVMNTIGCQPNVQTYNCLLKGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGFCK 239
Query: 308 VDAAE 312
V +E
Sbjct: 240 VGRSE 244
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 16/132 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
KR D EA R+ D NG+ + + L+ CK G L++ +
Sbjct: 134 KRNDADEAKRVLDRMLENGLNPNVVTFTTLIN-SFCKKGK---------------LQKAY 177
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ M T PN T+ + + E A+++++ +K I P + +Y + GF
Sbjct: 178 EVIDVMNTIGCQPNVQTYNCLLKGLCYIGKVEEAYEILEDIKKSSIEPDIYTYTAMMDGF 237
Query: 236 CKLGNTDKAYEV 247
CK+G +++A ++
Sbjct: 238 CKVGRSEEAMQL 249
>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K GD +A L+D G + YN LL CK G E D ND
Sbjct: 225 KIGDSGKARELFDAMLEQGCHVDLLAYNNLLEAL-CK-GGHVDEAMDFLND--------- 273
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
M++ KV+P+ T++ R + AF ++ +M+ + P + +Y +
Sbjct: 274 -----MLSKKVEPDAFTYSIFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRL 328
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK+ ++AY++ M SG+ P+ +A+ D +V++ +++ R+
Sbjct: 329 CKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAYHCDHCEVNRALKLISRM 379
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 79/187 (42%), Gaps = 17/187 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA L ++ R GI+ + + Y++++ C+ G +G + +QM
Sbjct: 436 EAFLLLNEMRKGGISPNVYTYSIIINGL-CQIGESERASG---------------LLEQM 479
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
I D + PN + + + +A + +K+M + P L Y + G +G
Sbjct: 480 IADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKM 539
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF-KI 300
D+A E M E G P + L+ A ++K ++LH++ ++ + +I
Sbjct: 540 DEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQI 599
Query: 301 IEDWFDS 307
+E +F S
Sbjct: 600 LEGYFKS 606
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 80/188 (42%), Gaps = 17/188 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
C R D+ A ++ ++ R G +L+ YN L+ C+ G+ G ++ + GL
Sbjct: 254 CKVR-DLESAKKVVEEMRETGCSLNVVTYNTLIGGL-CRAGAIEEAFGYKKEMEDYGLV- 310
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
P+ T+ ++ + P+ A L+ +M G+ P + Y +
Sbjct: 311 --------------PDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLID 356
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
GF + GN D+A+++ M +GV P + L++ ++ + IL ++ +
Sbjct: 357 GFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMA 416
Query: 294 SESTFKII 301
T+ ++
Sbjct: 417 DTMTYNLV 424
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 63/344 (18%), Positives = 134/344 (38%), Gaps = 55/344 (15%)
Query: 1 MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKP-----ITDI 55
++RG + R S L ++KI + ++ TY ++ H+ K + ++
Sbjct: 389 LIRGLCKLGRMGRASRILKQMTKIG----YMADTMTYNLVIEGHLRQHNKEEAFLLLNEM 444
Query: 56 KQNRFSADLTT------GLCTLAFSKKST------VNESSAPN---------------TG 88
++ S ++ T GLC + S++++ + + PN +
Sbjct: 445 RKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSF 504
Query: 89 TMSNKSKKKARRE--SPEGVLRHKLDM-CSKRGDVFEALRLYDDARSNGITLSQHHYNVL 145
+++ ++ KK RE +P+ + L + S G + EA+ YD+ G + Y L
Sbjct: 505 SLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGL 564
Query: 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED 205
++ S E +E ++ QM+ ++PN+ + + ++
Sbjct: 565 IHGYSMAGNLEKAE----------------QLLHQMLNSGLNPNDFIYAQILEGYFKSDN 608
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
E +K M G+ P R YG + G+ A V + + ++G+VP+ +
Sbjct: 609 LEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGS 668
Query: 266 LLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309
L+ A ++K +L + + S + + D F D
Sbjct: 669 LISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSD 712
>gi|170586474|ref|XP_001898004.1| hypothetical protein Bm1_32800 [Brugia malayi]
gi|158594399|gb|EDP32983.1| hypothetical protein Bm1_32800 [Brugia malayi]
Length = 591
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 486 SNDDWYWLYATVNC--KSLLVTNDEMRDH--LFQLLGTSFFPRWKEKHQIRLSVSRDGLN 541
S+DD + L A + + +TND +H + G S F +W EK +RL D +
Sbjct: 490 SSDDLFVLLAVMELGRNAFFLTNDFFMNHRNMLTTSGQSLFDKWVEKRAVRL----DDKD 545
Query: 542 LLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATR 581
++MP ++ Q++ENG +H+PV T + A +LC +
Sbjct: 546 IIMPSKFASYAQKTENG-YHIPVKTINKSIALHSFLCVRK 584
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ F + ++MI P+ +T++ V E+AF L ++MK G+ + +Y
Sbjct: 424 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 483
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK G ++A + M E G P +AL+ + AKKV E+ +
Sbjct: 484 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 538
Score = 40.0 bits (92), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 25/199 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENG 161
LD K V EA +L D G +Q Y+ L+ CK G +E SE+G
Sbjct: 605 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL-CKVGKLDEAQEVKTEMSEHG 663
Query: 162 DREN--------DSNLGLKR---GFEIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEM 208
D +KR ++ +M+ + PN +T + V K D
Sbjct: 664 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE-- 721
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A+ L++ M+ G P + +Y + GF +G + E+ MG GV P L+
Sbjct: 722 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID 781
Query: 269 LSVDAKKVDKVYEILHRLR 287
+D + +L ++
Sbjct: 782 HCCKNGALDVAHNLLEEMK 800
Score = 38.9 bits (89), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M PN T+T++ + + A +L + M S G P + +Y + G CK
Sbjct: 500 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 559
Query: 238 LGNTDKAYEVDAHMGESGVVPE 259
G +KA ++ M S VP+
Sbjct: 560 AGQVEKACQIFERMCGSKDVPD 581
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL----- 169
+ GD+ E RL ++G+ + Y+VL+ +C +++E D D L
Sbjct: 187 RLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGV 246
Query: 170 -------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
+ E+++QM++ + P+ T+ ++ K D + A DL+ +M
Sbjct: 247 TFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEM 306
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK------LS 270
+ G+ P SY + G CK G+ + A+E M + + ++ +AL+ S
Sbjct: 307 RMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRS 366
Query: 271 VDAKKV 276
+DA+K+
Sbjct: 367 IDAEKM 372
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 49/116 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ +F + + P+ +F ++ + D + F L M + G+ P + +Y
Sbjct: 156 IRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 215
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK D A E+ M + G+VP + L+ +VD E+ ++
Sbjct: 216 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQM 271
Score = 40.8 bits (94), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K+GD+ +A L D+ R G+ + Y L+ C CK G L+ F
Sbjct: 292 KKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGC-CKEGD---------------LETAF 335
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E ++MI + + ++ +T++ + A ++++M S G+ P +Y + F
Sbjct: 336 EHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEF 395
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
CK G+ ++ M G VP + L+
Sbjct: 396 CKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 427
>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Glycine max]
Length = 729
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
++PN T+T++ R K++ E A ++++M S G+ P + +Y + G C+ DK
Sbjct: 287 LNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMK 346
Query: 246 EVDAHM-GESGVVPEEPELSALLKLSVDAKKVD---KVYEILHRLR---------TLVRQ 292
+V M + G P+ + ++ L A +D KV+E + + R TL+R
Sbjct: 347 DVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRS 406
Query: 293 VSES-TFKIIEDWFDSVDAAEI 313
+ + + + E FD + EI
Sbjct: 407 LCQKGDYDMAEQLFDELFEKEI 428
>gi|225443152|ref|XP_002263537.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Vitis vinifera]
Length = 537
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 75/209 (35%), Gaps = 51/209 (24%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV-------------------------- 148
SK G++F++LRL+DD + G YN L+YV
Sbjct: 293 SKFGNLFDSLRLFDDMKKRGWIPGLEVYNSLIYVLTHENCLTEALKILGKIKEMGLQLDS 352
Query: 149 ----------CSCKCGSESSENGDRENDSNLG--------------LKRGFEIFQQMITD 184
C K E+ NLG + FE+ + + T
Sbjct: 353 ASYNCMIRPLCKAKKLEEARTILAAMIGENLGPTTETYHAFLEGASYEETFEVLKNLRTA 412
Query: 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244
PN TF + + PE A + +MK F + P Y + G K G KA
Sbjct: 413 GFGPNGDTFLLILDNLFKLDQPENALKIWVEMKQFDVVPGSEHYKVLIEGLTKFGWLVKA 472
Query: 245 YEVDAHMGESGVVPEEPELSALLKLSVDA 273
E+ A M G + ++P+L LLK V+
Sbjct: 473 RELYAEMRSKGFL-DDPKLKKLLKDPVEG 500
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV-CSCKCGSESSEN------ 160
R L+ SK G L++++ G+ ++Q YN L+ V C + +++
Sbjct: 661 RVLLNASSKSGKANAVLQMHEQLVDMGLKINQEAYNNLIVVFCRLRMTKKATSVLKYMIR 720
Query: 161 ----GDRENDSNL--------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208
D + L +K+ + QM+ + V PN T+ + +
Sbjct: 721 DGFVADTVTYNALIRGYCESSHVKKALATYTQMLNEGVSPNIVTYNLLLGGLLGAGLMAE 780
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+L +MK G+ P +Y + G+ K+GN ++ + M G VP+ + L+
Sbjct: 781 RDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLIS 840
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQV--SESTFKII 301
K+D+ E+L+ ++ VR V S ST+ I+
Sbjct: 841 DFAKVGKMDQARELLNEMQ--VRGVPPSSSTYDIL 873
Score = 41.2 bits (95), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R + Q+M ++PN T++S+ K + A +++K+M I P Y
Sbjct: 394 MERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAI 453
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+CK G + A ++ M SG+ L+ K++D+ E+L
Sbjct: 454 LIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRGKRMDEAEELL 506
Score = 40.4 bits (93), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 73/183 (39%), Gaps = 17/183 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G AL + ++ I YNVL+ NG E+ G
Sbjct: 530 KAGKESAALNMVEEMTEKSIPFDVVTYNVLI-------------NGLLEH----GKYEAK 572
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ MI + PN+AT+ + + + + + A +L +MKS I P + + G
Sbjct: 573 SVYSGMIEMGLAPNQATYNIMIKAYCKQGELDNALELWNEMKSHKIMPSSITCNTLVVGL 632
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
+ G +KA V M G+ P LL S + K + V ++ +L + ++++
Sbjct: 633 SEAGEIEKAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKANAVLQMHEQLVDMGLKINQ 692
Query: 296 STF 298
+
Sbjct: 693 EAY 695
>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 87/217 (40%), Gaps = 25/217 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL--------LYVCSCKCGSESSENGD 162
L K G + +A+ + + S GIT + YN L L + K + +NG
Sbjct: 206 LSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGL 265
Query: 163 RENDSNL-GLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
N L GF F +M V PN T+ ++ + MA
Sbjct: 266 EPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGK 325
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
+ ++M G+ + +Y + G CK G T KA + + + +VP SAL+
Sbjct: 326 VYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQC 385
Query: 272 DAKKVDKVYEILHRLRTLVR---QVSESTFKIIEDWF 305
K D+ +++ +++VR +E TFK++ F
Sbjct: 386 ARKNSDRAFQL---YKSMVRSGCHPNEQTFKMLTSAF 419
Score = 46.6 bits (109), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+++M ++ PN TF V E A +++++M+S GI P + SY +
Sbjct: 183 ALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLIA 242
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G C G A ++ MG++G+ P ++L+ K+ + ++ +
Sbjct: 243 GHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTP 302
Query: 294 SESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG 331
+ T+ + + + V + + KV E ++R G
Sbjct: 303 NTVTYNTLINGYGQVGNSNMA------GKVYEEMMRNG 334
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 22/191 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG-DRENDSNLGLKRG 174
K G + EA R + + + +T + YN L+ NG + +SN+ K
Sbjct: 281 KEGKLHEANRFFSEMKVMNVTPNTVTYNTLI-------------NGYGQVGNSNMAGK-- 325
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKE-DPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
++++M+ + V + T+ ++ L + KE + A LVK++ + P +Y +
Sbjct: 326 --VYEEMMRNGVKADILTYNALI-LGLCKEGKTKKAAFLVKELDKENLVPNASTYSALIS 382
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G C N+D+A+++ M SG P E L V + + + +L + R +
Sbjct: 383 GQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVL--MDMFARSM 440
Query: 294 SESTFKIIEDW 304
+ + ++E +
Sbjct: 441 ASDSNTLLEIY 451
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R F++++ M+ PNE TF + V ED E AF+++ M + + +
Sbjct: 392 RAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNTLLEIY 451
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPE 259
G C+ G + A ++ M ++PE
Sbjct: 452 DGLCQCGKENLAMKLCHEMEARRLIPE 478
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 61/131 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + ++M P+ T+TS+ ++D + + L+ +M+ PP + +Y
Sbjct: 286 LKEALDTMEEMKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTI 345
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ K G T +A + + E GV P+ ++L+ + A +++ Y ++ +RT
Sbjct: 346 LMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTG 405
Query: 291 RQVSESTFKII 301
+ +TF +
Sbjct: 406 IAPNVTTFNTL 416
Score = 47.4 bits (111), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 18/163 (11%)
Query: 99 RRESPEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156
+R P V+ + + M K G EAL +D + +G+ YN L+Y+ + G
Sbjct: 333 KRRCPPNVVTYTILMHALGKAGRTREALDTFDKLKEDGVAPDASFYNSLIYILG-RAGR- 390
Query: 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
L+ + + ++M T + PN TF ++ A E A L+ +M
Sbjct: 391 --------------LEDAYSVVEEMRTTGIAPNVTTFNTLISAACDHSQAENALKLLVKM 436
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ P +++Y P L CK + HM + P+
Sbjct: 437 EEQSCNPDIKTYTPLLKLCCKRQWVKILLFLVCHMFRKDISPD 479
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 116 KRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
KRG A ++D+ S G+T + +N+L+ R N + G
Sbjct: 203 KRGRTNMAQSVFDEMLSTYGVTPDTYTFNILI----------------RGFCKNSMVDEG 246
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM--KSFGIPPKLRSYGPAL 232
F F++M K DP+ T+ ++ +A ++V M KS + P + +Y +
Sbjct: 247 FRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLV 306
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284
G+C D+A V M G+ P E + L+K + +K+DK+ +I
Sbjct: 307 RGYCMKHEIDEALVVFEEMVSKGLKPNEITYNTLIKGLCEVQKIDKIKQIFE 358
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 171 LKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
LK ++F +MI + PN T+ S+ + A +L+++M G P + +Y
Sbjct: 201 LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYT 260
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GFCKL D AY++ M G+ P+ ++L+ ++ IL +R
Sbjct: 261 TLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRK 320
Query: 290 VRQVSESTFKIIEDWF 305
+ T+ I D +
Sbjct: 321 SCSPTVYTYNTILDGY 336
Score = 38.9 bits (89), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 76/177 (42%), Gaps = 18/177 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G V EA+ L R + + + +++ +C + SE+
Sbjct: 88 IDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEA------------- 134
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ ++M+ P+ T+T++ + + A + +Q+ + G P + +Y
Sbjct: 135 ----YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSC 190
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESG-VVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G CK G +A ++ M +SG +P ++L+ K+D+ +L R+
Sbjct: 191 LIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERM 247
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,781,816,074
Number of Sequences: 23463169
Number of extensions: 425304988
Number of successful extensions: 1126942
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2286
Number of HSP's successfully gapped in prelim test: 1151
Number of HSP's that attempted gapping in prelim test: 1102141
Number of HSP's gapped (non-prelim): 20657
length of query: 593
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 445
effective length of database: 8,886,646,355
effective search space: 3954557627975
effective search space used: 3954557627975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)