BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007684
(593 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=PRORP1 PE=1 SV=1
Length = 572
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/587 (63%), Positives = 449/587 (76%), Gaps = 19/587 (3%)
Query: 1 MLRGNFLTPSLIRTS-PFLTFLSKISLPLMHQSNCHTYRSLLCWHMHSFTKPITDIKQNR 59
MLR TPS R P + K+ +H +R +H K D +
Sbjct: 1 MLRLTCFTPSFSRACCPLFAMMLKVPSVHLHHPRFSPFRF---YHTSLLVKGTRD--RRL 55
Query: 60 FSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD 119
+ + LCTL + +S+A + +S K+KKKA ++SPE +L+ KLDMCSK+GD
Sbjct: 56 ILVERSRHLCTLPLA---AAKQSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGD 112
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNLGLKRGFEIF 178
V EALRLYD+AR NG+ LSQ+HYNVLLYVCS + +ESS N GL RGF+IF
Sbjct: 113 VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNP--------GLSRGFDIF 164
Query: 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+QMI DKV PNEATFT+ ARLAVAK+DPEMAFD+VKQMK+FGI P+LRSYGPALFGFC+
Sbjct: 165 KQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK 224
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298
G+ DKAYEVDAHM ES VVPEEPEL+ALLK+S+D K DKVY+ L RLR LVRQVS+STF
Sbjct: 225 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 284
Query: 299 KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVC 358
+IE+WF S A + GV WDV K+R+ +V GGGGWHGQGWLG+GKW V+RT++DENGVC
Sbjct: 285 DMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVC 344
Query: 359 CSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVG 418
C E+LVCIDI+P ETE FA+SL+ LAC+REV+++FN+FQEWL RHGPFDAVIDGAN+G
Sbjct: 345 KCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMG 404
Query: 419 LVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGA 478
LVNQ +FSF+QLN V R +Q+SPSKR+PLVILHK RV+GGPA PKN+ LL+ W++ GA
Sbjct: 405 LVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGA 464
Query: 479 LYTTPPGSNDDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSR- 537
LY TPPGSNDDWYWLYA V+CK LLVTNDEMRDHLFQLLG SFFPRWKEKHQ+R+SV+R
Sbjct: 465 LYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTRE 524
Query: 538 DGLNLLMPPPYSIVIQESENGSWHVPVITGDDLEAPRQWLCATRARV 584
DGL L MPPPYSIVIQESE+G+WHVP+ DDL+ RQWLCA R++
Sbjct: 525 DGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSKT 571
>sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1
Length = 576
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/494 (46%), Positives = 313/494 (63%), Gaps = 25/494 (5%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
E L L CSKR D+ AL LYD A S+ I L+Q H+ LLY+CS S +
Sbjct: 89 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQT-- 146
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-- 220
+ + RGF+IF +M++ + PNE++ T+VARLA AK D + AF LVK + + G
Sbjct: 147 ------VAIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGV 200
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
P+LR+Y PAL FC +K YEV+ HM SG+V EE E+SALLK+S + +KVY
Sbjct: 201 SVPRLRTYAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVY 260
Query: 281 EILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREGIVRGGGGWHGQG 338
L +LR V VSE T K IE+WF V A+E+ + D+ +R +++ GGGWHG G
Sbjct: 261 RYLQKLRECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLG 320
Query: 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVR------ 392
W+G GKW V++ + G C SC+E L C+D + ETE+F +SL LA +R+ +
Sbjct: 321 WVGEGKWIVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEP 380
Query: 393 -SDFNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVNRLRQMSPSKRMP 447
+DF++FQEWL +HG ++A++DGAN+GL Q+ FS QL VV L S SK+ P
Sbjct: 381 MADFSEFQEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQP 440
Query: 448 LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNCKSLLVTND 507
L++LHK RV+ + P ++ L++ W + LY TPPGSNDDWYWLYA K LLVTND
Sbjct: 441 LILLHKKRVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWYWLYAAAKLKCLLVTND 499
Query: 508 EMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQESENGSWHVPVITG 567
EMRDH+F+LL SFF +WKE+HQ+R + + L L MPPP+S+VIQESE GSWHVP+ +
Sbjct: 500 EMRDHIFELLSNSFFQKWKERHQVRFTFVKGCLKLEMPPPFSVVIQESEKGSWHVPITSQ 559
Query: 568 DDLEAPRQWLCATR 581
D E+ R W+C TR
Sbjct: 560 DKEESLRSWMCITR 573
>sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1
Length = 528
Score = 426 bits (1096), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/509 (45%), Positives = 321/509 (63%), Gaps = 27/509 (5%)
Query: 92 NKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLLYVCS 150
NK KK +R +PE L L+ CSK D+ AL LYD A S+ + LSQ H+ LLY+CS
Sbjct: 20 NKKKKVSR--NPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLCS 77
Query: 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
S + L + RGFEIF +M++ + PNEA+ TSVARLA AK + + AF
Sbjct: 78 ASITDISLQY--------LAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAF 129
Query: 211 DLVKQMKSFG--IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+VK+ S G P+LR+Y PAL FC+ +K YEV+ HM +G+ EE E+SALLK
Sbjct: 130 KVVKEFVSVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLK 189
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG--VLNWDVSKVREG 326
+S + +KVY LH+LR V VSE T KIIE+WF A E+G + DV +RE
Sbjct: 190 VSAATGRENKVYRYLHKLREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREA 249
Query: 327 IVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLA 386
++ GGGWHG GW+G GKW V++ + G C SC+E+L C+D + ET+ F SL LA
Sbjct: 250 VLNNGGGWHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALA 309
Query: 387 CQREVRSD-------FNKFQEWLGRHGPFDAVIDGANVGLVNQH----NFSFYQLNTVVN 435
R+ + + F++FQ+WL +HG ++A++DGAN+GL Q+ +FS QL +V+
Sbjct: 310 MDRKTKMNSCETNVVFSEFQDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMK 369
Query: 436 RLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYA 495
L + S + + PL++LHK RV + P ++ L++ W G LY TPPGSNDDWYWLYA
Sbjct: 370 ELYRESGNNKWPLILLHKRRVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWYWLYA 428
Query: 496 TVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPPPYSIVIQES 555
K LLVTNDEMRDH+F+LLG++FF +WKE+HQ+R + + L L MP P+S+VIQES
Sbjct: 429 AAKLKCLLVTNDEMRDHIFELLGSTFFQKWKERHQVRYTFVKGNLKLEMPSPFSVVIQES 488
Query: 556 ENGSWHVPVITGDDLEAPRQWLCATRARV 584
E GSWH PV ++ E+ R W+C +R +
Sbjct: 489 EKGSWHFPVSCENNEESSRTWMCISRQSI 517
>sp|B5DF07|MRRP3_RAT Mitochondrial ribonuclease P protein 3 OS=Rattus norvegicus
GN=Mrpp3 PE=2 SV=1
Length = 587
Score = 79.3 bits (194), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 117/531 (22%), Positives = 205/531 (38%), Gaps = 86/531 (16%)
Query: 76 KSTVNESSAPNTGTMSNKSKK--KARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133
KSTV + P +K K+ K + + V+ CS DV ++L + A++N
Sbjct: 112 KSTVQLPTKPLNSEEWDKLKEDFKGKASFEDFVISQMTRSCSSV-DVAKSLLAWVAAKNN 170
Query: 134 GITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192
GI YN+L+ Y+ C ++SE D +++ M
Sbjct: 171 GIV----GYNLLVKYLYLCVFHKQTSEVID--------------VYEIMKAKYKSLESGG 212
Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
+T + R + + A L++ +K +P K ++YG + G + + A+ + +
Sbjct: 213 YTLLIRGLIHSDRWREALLLLEDIKKVMVPSK-KNYGDCIQGALLHQDVNVAWSLYQELV 271
Query: 253 ESGVVPEEPELSALL---KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309
++P L A K D + +++ +IL LR ES I+ WF+S+
Sbjct: 272 GHNLIPLLETLKAFFDHGKDMNDDQYSNQLLDILLYLRNNQLYPGESFAHSIKTWFESIP 331
Query: 310 AAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID 369
+ W+ + T I ++G C SC + I
Sbjct: 332 GRQ--------------------------------WKGQFTTIQKSGQCSSCGRAIESIH 359
Query: 370 IDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH 423
+ P E E ++ ++ + +F+ ++ PFD VIDG NV +
Sbjct: 360 LSPEEYEFLKETIMRDVIDGGDQYKKTTPQELKRFERFVKSCPPFDIVIDGLNVAKM--- 416
Query: 424 NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTP 483
F + N L +S + L +L GR K ++ R +
Sbjct: 417 ---FPKGRESQNLLGIVSQLAQQNLQLLVLGRKHMLRPSSQWRKDEMEQVRKQAHCFFAD 473
Query: 484 PGSNDDWYWLYATVN----CKSLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVS 536
S DD + LYAT+N CK +T D +RDH L F +W++ HQ+ ++
Sbjct: 474 NISEDDPFLLYATLNSGSHCK--FITKDLLRDHKACLPDARAQRLFFKWQQGHQLAITKG 531
Query: 537 --RDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEAPRQWLCATR 581
+ L Y V+Q + + +WH+P ++ E P +WLC R
Sbjct: 532 FLKSKLTFQHILSYDTVVQTTGD-TWHIPYDEDLVPRSSCEVPTKWLCLQR 581
>sp|Q8JZY4|MRRP3_MOUSE Mitochondrial ribonuclease P protein 3 OS=Mus musculus GN=Kiaa0391
PE=2 SV=1
Length = 584
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 106/486 (21%), Positives = 184/486 (37%), Gaps = 83/486 (17%)
Query: 119 DVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
DV ++L + A++NGI YN+L+ Y+ C ++SE D +
Sbjct: 153 DVAKSLLAWVAAKNNGIV----GYNLLVKYLYLCVFHKQTSEVID--------------V 194
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++ M +T + R + + + L++ +K +P K ++YG + G
Sbjct: 195 YEIMKAKYKSLESGGYTLLIRGLIHSDRWRESLLLLEDIKKVMVPSK-KNYGDCIQGALL 253
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK---VDKVYEILHRLRTLVRQVS 294
+ + A+ + + ++P L A D DK+ +IL LR
Sbjct: 254 HQDVNTAWNLYQELIGHNLIPPLETLKAFFDYGKDINDDHYSDKLLDILLYLRNNQLYPG 313
Query: 295 ESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDE 354
ES I+ WF+S+ + W+ + T I +
Sbjct: 314 ESFAHSIKTWFESIPGRQ--------------------------------WKGQFTTIQK 341
Query: 355 NGVCCSCNERLVCIDIDPRETENFASSLSNLAC------QREVRSDFNKFQEWLGRHGPF 408
+G C C + I + P E E + ++ + +F+ ++ PF
Sbjct: 342 SGQCSGCGRTIEPIHLSPEEYEFLKEKIMRDVIDGGDQYKKTTPQELKRFESFVNSCPPF 401
Query: 409 DAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKK 468
D VIDG NV + F + N L +S + L +L GR K+
Sbjct: 402 DIVIDGLNVAKM------FPKGRESQNLLGVVSQLAQQNLQLLVLGRKHMLRPSSQWRKE 455
Query: 469 LLDIWRDGGALYTTPPGSNDDWYWLYATVN----CKSLLVTNDEMRDH---LFQLLGTSF 521
++ R + S DD + LYAT+N CK +T D +RDH L
Sbjct: 456 EMEQVRKQAHCFFADNISEDDPFLLYATLNSGNHCK--FITKDLLRDHKACLPDARTQRL 513
Query: 522 FPRWKEKHQIRL--SVSRDGLNLLMPPPYSIVIQESENGSWHVP----VITGDDLEAPRQ 575
F +W++ HQ+ + + L Y V+Q + + SWH+P ++ E P +
Sbjct: 514 FFKWQQGHQLAIMKGFQKSKLTFQHILSYDTVVQRTGD-SWHIPYDEDLVQRSSCEVPTK 572
Query: 576 WLCATR 581
WLC R
Sbjct: 573 WLCLQR 578
>sp|O15091|MRRP3_HUMAN Mitochondrial ribonuclease P protein 3 OS=Homo sapiens GN=KIAA0391
PE=1 SV=2
Length = 583
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 109/507 (21%), Positives = 199/507 (39%), Gaps = 83/507 (16%)
Query: 95 KKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKC 153
K+ + S E + ++ C DV ++L + A++NGI Y++L+ Y+ C
Sbjct: 132 KENTGKTSFESWIISQMAGCHSSIDVAKSLLAWVAAKNNGIV----SYDLLVKYLYLCVF 187
Query: 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
++SE D +F+ M ++ + R + + A L+
Sbjct: 188 HMQTSEVID--------------VFEIMKARYKTLEPRGYSLLIRGLIHSDRWREALLLL 233
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+ +K I P ++Y + G + + A+ + + +VP L A D
Sbjct: 234 EDIKKV-ITPSKKNYNDCIQGALLHQDVNTAWNLYQELLGHDIVPMLETLKAFFDFGKDI 292
Query: 274 KK---VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRG 330
K +K+ +IL LR ES I+ WF+SV
Sbjct: 293 KDDNYSNKLLDILSYLRNNQLYPGESFAHSIKTWFESVP--------------------- 331
Query: 331 GGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLAC--- 387
G W GQ T + ++G C C + + I + P E E +
Sbjct: 332 GKQWKGQF-----------TTVRKSGQCSGCGKTIESIQLSPEEYECLKGKIMRDVIDGG 380
Query: 388 ---QREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSK 444
++ + +F+ ++ PFD VIDG NV + L VV++L + +
Sbjct: 381 DQYRKTTPQELKRFENFIKSRPPFDVVIDGLNVAKMFPKVRESQLLLNVVSQLAK----R 436
Query: 445 RMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATV----NCK 500
+ L++L + + +Q +++ ++ + + + S DD + LYAT+ +C+
Sbjct: 437 NLRLLVLGRKHMLRRSSQWSRDE--MEEVQKQASCFFADDISEDDPFLLYATLHSGNHCR 494
Query: 501 SLLVTNDEMRDH---LFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMPP--PYSIVIQES 555
+T D MRDH L F +W++ HQ+ + G L Y V+Q +
Sbjct: 495 --FITRDLMRDHKACLPDAKTQRLFFKWQQGHQLAIVNRFPGSKLTFQRILSYDTVVQTT 552
Query: 556 ENGSWHVP----VITGDDLEAPRQWLC 578
+ SWH+P ++ E P +WLC
Sbjct: 553 GD-SWHIPYDEDLVERCSCEVPTKWLC 578
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 77/192 (40%), Gaps = 27/192 (14%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK----- 172
G V EAL+L D+ S G+ YN ++ CK E + E NL LK
Sbjct: 242 GGVDEALKLMDEMLSRGLKPDMFTYNTIIR-GMCK---EGMVDRAFEMVRNLELKGCEPD 297
Query: 173 ------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
G ++ +M ++K DPN T++ + E A +L+K
Sbjct: 298 VISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLK 357
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
MK G+ P SY P + FC+ G D A E M G +P+ + +L
Sbjct: 358 LMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNG 417
Query: 275 KVDKVYEILHRL 286
K D+ EI +L
Sbjct: 418 KADQALEIFGKL 429
Score = 52.8 bits (125), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 19/145 (13%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
R + +M+++ +DP+E T+ S+ + + AF+L+ M+S P + +Y L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVL 515
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL-------------LKLSVDAKKVDKV 279
GFCK + A V M +G P E + L ++L+ D ++D +
Sbjct: 516 LGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLVRIDAI 575
Query: 280 YEI----LHRLRTL--VRQVSESTF 298
E LHR L V Q S TF
Sbjct: 576 SEYSFKRLHRTFPLLNVLQRSSQTF 600
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 16/160 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K + +A R+ D RS + YN+++ GS S L
Sbjct: 170 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMI-------GSLCSRGK---------LDLAL 213
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ Q+++D P T+T + + + + A L+ +M S G+ P + +Y + G
Sbjct: 214 KVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGM 273
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
CK G D+A+E+ ++ G P+ + LL+ ++ K
Sbjct: 274 CKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGK 313
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/186 (19%), Positives = 72/186 (38%), Gaps = 16/186 (8%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + EA+ L + G+T + Y+ L+ C+ G L
Sbjct: 345 RDGKIEEAMNLLKLMKEKGLTPDAYSYDPLI-AAFCREGR---------------LDVAI 388
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E + MI+D P+ + +V + A ++ ++ G P SY
Sbjct: 389 EFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
G+ +A + M +G+ P+E ++++ VD+ +E+L +R+ S
Sbjct: 449 WSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSV 508
Query: 296 STFKII 301
T+ I+
Sbjct: 509 VTYNIV 514
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 56/129 (43%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ EIF ++ PN +++ ++ + D A ++ +M S GI P +Y +
Sbjct: 421 QALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMI 480
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
C+ G D+A+E+ M P + +L A +++ +L + +
Sbjct: 481 SCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCR 540
Query: 293 VSESTFKII 301
+E+T+ ++
Sbjct: 541 PNETTYTVL 549
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG----- 170
+ GD +A L+D+ ++GI +Q Y L+YV C + D + +G
Sbjct: 409 QHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVL---CRKNKTREADELFEKVVGKGMKP 465
Query: 171 -----------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
+ R F + ++M ++P++ T+ + R + E A +L+
Sbjct: 466 DLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELM 525
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
+MK GI P SY + G+ K G+T A+ V M G P +ALLK
Sbjct: 526 GEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKN 585
Query: 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310
++ + E+L +++ ++S+F + + ++DA
Sbjct: 586 QEGELAEELLREMKSEGIVPNDSSFCSVIEAMSNLDA 622
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 19/193 (9%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE-NDSNLGL- 171
CS GD+ A D+ G+ + + YN L++ + E++E RE + + L
Sbjct: 337 CSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLD 396
Query: 172 -----------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214
K+ F + +M+TD + P + T+TS+ + K A +L +
Sbjct: 397 SVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFE 456
Query: 215 QMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
++ G+ P L + G C +GN D+A+ + M + P++ + L++
Sbjct: 457 KVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEG 516
Query: 275 KVDKVYEILHRLR 287
K ++ E++ ++
Sbjct: 517 KFEEARELMGEMK 529
Score = 42.4 bits (98), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 19/160 (11%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168
H L + S+ + A Y D I + + +N+++ V CK G G
Sbjct: 195 HILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVL-CKEGKLKKAKG------F 247
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
LG+ E+F + P T+ ++ + + E A ++ +MKS G P +++Y
Sbjct: 248 LGI---MEVF------GIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTY 298
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
P L C N +A EV M E G+VP+ + L++
Sbjct: 299 NPILSWMC---NEGRASEVLREMKEIGLVPDSVSYNILIR 335
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCS-CKCGSESSENGDRENDSNL 169
+D + GDV AL + + NGI L + ++ L VC CK G R D+
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSAL--VCGMCKEG--------RVIDAER 471
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L+ +M+ + P++ T+T + K D + F L+K+M+S G P + +Y
Sbjct: 472 ALR-------EMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYN 524
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L G CKLG A + M GVVP++ + LL+
Sbjct: 525 VLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLLE 563
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E +Q+M++ + P+ + ++ D A ++V M G+ P +Y + GF
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGF 425
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL-KLSVDAKKVDKVYEILHRLRTLVRQVS 294
C+ G+ + A E+ M ++G+ + SAL+ + + + +D + LR ++
Sbjct: 426 CRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKP-D 484
Query: 295 ESTFKIIEDWFDSVDAAEIG 314
+ T+ ++ D F A+ G
Sbjct: 485 DVTYTMMMDAFCKKGDAQTG 504
Score = 35.8 bits (81), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+F +M + PN+ FT++ + ++ + ++M S G+ P + Y + GFC
Sbjct: 332 LFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFC 391
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
K G+ A + M G+ P++ + L+ V+ EI
Sbjct: 392 KNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEI 437
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
D + FD ++ + P + S+ + G+CK+GN D+ + + M +S P+ S
Sbjct: 258 DAQKVFD---EITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYS 314
Query: 265 ALLKLSVDAKKVDKVYEILHRL 286
AL+ K+D + + +
Sbjct: 315 ALINALCKENKMDGAHGLFDEM 336
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ L+ ++F +M V PN T+ ++ + D EMAF + M GI + +Y
Sbjct: 322 MKLQEASKVFGEMKAVNVAPNTVTYNTLINGYSQQGDHEMAFRFYEDMVCNGIQRDILTY 381
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+FG CK T KA + + + +VP SAL+ K D+ +E+ ++
Sbjct: 382 NALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFEL---YKS 438
Query: 289 LVR---QVSESTFKIIEDWF 305
++R +E TF ++ F
Sbjct: 439 MIRSGCHPNEQTFNMLVSAF 458
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 19/132 (14%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL---- 169
S++GD A R Y+D NGI YN L++ +C ++++ + NL
Sbjct: 354 SQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNS 413
Query: 170 --------------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
RGFE+++ MI PNE TF + ED + A ++++
Sbjct: 414 STFSALIMGQCVRKNADRGFELYKSMIRSGCHPNEQTFNMLVSAFCRNEDFDGASQVLRE 473
Query: 216 MKSFGIPPKLRS 227
M IP R+
Sbjct: 474 MVRRSIPLDSRT 485
Score = 35.8 bits (81), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 47/116 (40%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+++M K+ PN T V + +L++ M+ G SY +
Sbjct: 222 ALRFYREMRRCKISPNPYTLNMVMSGYCRSGKLDKGIELLQDMERLGFRATDVSYNTLIA 281
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
G C+ G A ++ MG+SG+ P + L+ A K+ + ++ ++ +
Sbjct: 282 GHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAV 337
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD+ EA +L+ + G+ + L+ CK G +K F +
Sbjct: 400 GDMVEAGKLFHEMFCKGLEPDSVTFTELIN-GYCKAGH---------------MKDAFRV 443
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
MI PN T+T++ + D + A +L+ +M G+ P + +Y + G CK
Sbjct: 444 HNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 503
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
GN ++A ++ +G+ + + L+ + ++DK EIL + Q + T
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563
Query: 298 FKIIEDWFDSVDAAEIG--VLNWDVSK 322
F ++ + F E G +LNW ++K
Sbjct: 564 FNVLMNGFCLHGMLEDGEKLLNWMLAK 590
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ F +M + + P+ T+T++ D A L +M G+ P ++ + G+
Sbjct: 372 KFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGY 431
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK G+ A+ V HM ++G P + L+ +D E+LH +
Sbjct: 432 CKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM 482
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ G ++ M+ + PN TF S+ + + + + A + K M S G+ P ++Y
Sbjct: 577 LEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYEN 636
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G CK N +A+ + M G S L+K + KK + E+ ++R
Sbjct: 637 LVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMR 693
Score = 36.2 bits (82), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 67/171 (39%), Gaps = 18/171 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA R+++ + G+ LS NV L S C ++ +F++
Sbjct: 193 EARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTAT---------------AIIVFREF 237
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
V N A++ V + A L+ M+ G P + SY + G+C+ G
Sbjct: 238 PEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGEL 297
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
DK +++ M G+ P +++ L ++ K+ E ++RQ
Sbjct: 298 DKVWKLIEVMKRKGLKPNSYIYGSIIGLLC---RICKLAEAEEAFSEMIRQ 345
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 21/213 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + +A++ Y D R G+ +++ Y L+ +CK G+ S +G
Sbjct: 374 VDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA-NCKIGNLSDAFRLGNEMLQVG 432
Query: 171 --------------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
+K E+F +M T V PN A++ ++ V ++ + A
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
+L+ ++K GI P L YG ++G C L + A V M E G+ + L+
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303
+ + +L ++ L +V+ TF ++ D
Sbjct: 553 FKSGNPTEGLHLLDEMKELDIEVTVVTFCVLID 585
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 84/233 (36%), Gaps = 58/233 (24%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL------------------------- 145
+D K GDV A L+++ + G+ YN +
Sbjct: 269 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 328
Query: 146 ---------LYVCSCKCGS---------ESSENGDRENDSNLG------LKRGFEIFQQM 181
L C CK G E NG + N + K G + QQ
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEG--MMQQA 386
Query: 182 ITDKVD-------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I VD PNE T+TS+ + AF L +M G+ + +Y + G
Sbjct: 387 IKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDG 446
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
C +A E+ M +GV+P +AL+ V AK +D+ E+L+ L+
Sbjct: 447 LCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELK 499
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 16/147 (10%)
Query: 142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAV 201
YN L+ C CK G L G E +++M + + PN +++++
Sbjct: 335 YNALIN-CFCKFGK---------------LPIGLEFYREMKGNGLKPNVVSYSTLVDAFC 378
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ + A M+ G+ P +Y + CK+GN A+ + M + GV
Sbjct: 379 KEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVV 438
Query: 262 ELSALLKLSVDAKKVDKVYEILHRLRT 288
+AL+ DA+++ + E+ ++ T
Sbjct: 439 TYTALIDGLCDAERMKEAEELFGKMDT 465
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 20/155 (12%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+K G + R + D G + YN+++ C CK G + G
Sbjct: 238 AKLGKTDDVKRFFKDMIGAGARPTVFTYNIMID-CMCKEGDVEAARG------------- 283
Query: 175 FEIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+F++M + P+ T+ S+ V + D + F ++MK P + +Y +
Sbjct: 284 --LFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCF--FEEMKDMCCEPDVITYNALI 339
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
FCK G E M +G+ P S L+
Sbjct: 340 NCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLV 374
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 75/191 (39%), Gaps = 28/191 (14%)
Query: 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL 126
GLC+L + + V + G +N + +D K G+ E L L
Sbjct: 516 GLCSLEKIEAAKVVMNEMKECGIKANSL-----------IYTTLMDAYFKSGNPTEGLHL 564
Query: 127 YDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185
D+ + I ++ + VL+ +C K S++ + +R ++ + GL+ IF MI
Sbjct: 565 LDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISN-DFGLQANAAIFTAMIDGL 623
Query: 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
N+ E A L +QM G+ P +Y + G K GN +A
Sbjct: 624 CKDNQV---------------EAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEAL 668
Query: 246 EVDAHMGESGV 256
+ M E G+
Sbjct: 669 ALRDKMAEIGM 679
>sp|Q9SNB7|PP264_ARATH Pentatricopeptide repeat-containing protein At3g46610
OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1
Length = 665
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS--------ENGD 162
L SKRG +RL + G+ + H+N +L CS + ++ +NG+
Sbjct: 430 LSAASKRGIWRWGVRLLNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMVDNGE 489
Query: 163 RENDSNLG-----LKRG------FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ + G L++G F ++ MI ++PN +T++A + ++ +
Sbjct: 490 KPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDT 549
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L+K+M S GI P + ++ + G + G + AYE M V P E L++
Sbjct: 550 LLKEMASKGIEPSVVTFNAVISGCARNGLSGVAYEWFHRMKSENVEPNEITYEMLIEALA 609
Query: 272 DAKKVDKVYEI 282
+ K YE+
Sbjct: 610 NDAKPRLAYEL 620
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 58/161 (36%), Gaps = 25/161 (15%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNG-------ITLSQHHYNVLLYVCSCKCGSESS 158
V H + + K + AL +Y+D G L H+N+LL S +
Sbjct: 383 VCNHLIWLMGKAKKWWAALEIYEDLLDEGPEPNNLSYELVVSHFNILLSAASKR------ 436
Query: 159 ENGDRENDSNLGLKR-GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
G+ R G + +M + P + +V + A + K M
Sbjct: 437 -----------GIWRWGVRLLNKMEDKGLKPQRRHWNAVLVACSKASETTAAIQIFKAMV 485
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258
G P + SYG L K D+A+ V HM + G+ P
Sbjct: 486 DNGEKPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEP 526
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K F+ F++M+ ++PNE T+ + R + D + + L +MK G+ P L +Y
Sbjct: 511 IKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNA 570
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ FCK+ KA E+ M G+ P+ S L+K
Sbjct: 571 TIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIK 608
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 37/198 (18%)
Query: 133 NGITLSQHHYNVLLYVCSCKCGSESSENG--------DRENDSNL--------------G 170
+G+ S + YN V C C + EN DR NL
Sbjct: 419 DGLLSSVYSYNA---VIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGD 475
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ + ++++ P+ TF+ + ++ + AFD K+M +GI P +Y
Sbjct: 476 VKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNEITYNI 535
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL---- 286
+ C G+TD++ ++ A M E+G+ P+ +A ++ +KV K E+L +
Sbjct: 536 LIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIG 595
Query: 287 --------RTLVRQVSES 296
TL++ +SES
Sbjct: 596 LKPDNFTYSTLIKALSES 613
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F Q+ + P+ + +V V ++A+ +QM+S G P +Y + G
Sbjct: 166 DVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGV 225
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK G D+A + M + G P + L+ + A +VD+ + L +R +E
Sbjct: 226 CKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRKLNPNE 285
Query: 296 STFK 299
+T +
Sbjct: 286 ATIR 289
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 167 SNLGLKR---GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
SNL KR + F + D+ +P+ +T++ R + A + K+MK GI P
Sbjct: 229 SNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEP 288
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ +Y + C+ G +A++V A M +SG P + L+++ V A + +KV ++
Sbjct: 289 NVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVY 348
Query: 284 HRLRTL 289
++++ L
Sbjct: 349 NQMKKL 354
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 16/132 (12%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G++ EA +++ + + GI + + Y++++ C+CG + R
Sbjct: 267 RAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDAL-CRCGQ---------------ISRAH 310
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F M+ PN TF ++ R+ V E + QMK G P +Y +
Sbjct: 311 DVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAH 370
Query: 236 CKLGNTDKAYEV 247
C+ N + A +V
Sbjct: 371 CRDENLENAVKV 382
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++ +M+ K +PN T+ + R+ V + +M + K+M + P + +Y + FC
Sbjct: 417 MYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFC 476
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELS 264
+G+ + AY++ M E + P LS
Sbjct: 477 GMGHWNNAYKLFKEMVEEKCLT--PSLS 502
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 16/143 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + L++Y+ + G YN L+ C E+ EN
Sbjct: 337 KAGRTEKVLQVYNQMKKLGCEPDTITYNFLI---EAHCRDENLENA-------------V 380
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ MI K + N +TF ++ R K D A + +M P +Y + F
Sbjct: 381 KVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMF 440
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
+TD ++ M + V P
Sbjct: 441 VGSKSTDMVLKMKKEMDDKEVEP 463
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 1/139 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+KR EI+ M+ +DP+ F+ +A+ +PE A ++ QM+ FG+ P + Y
Sbjct: 617 MKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQ 676
Query: 231 ALFGFCKLGNTDKAYEVDAHM-GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C G KA +V M G G+ P L+ +AK+ K E+L +
Sbjct: 677 IISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGK 736
Query: 290 VRQVSESTFKIIEDWFDSV 308
+ T ++I D + S+
Sbjct: 737 NVVPTRKTMQLIADGWKSI 755
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +M V PN F S+ + + D + ++V M+ FG+ P + ++
Sbjct: 547 MEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFST 606
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL- 289
+ + +G+ + E+ M E G+ P+ S L K A + +K +IL+++R
Sbjct: 607 LMNAWSSVGDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFG 666
Query: 290 VRQVSESTFKIIEDW 304
VR +II W
Sbjct: 667 VRPNVVIYTQIISGW 681
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
I +M+ +KV PN T ++ + E A +MK G+ P L + + GF
Sbjct: 518 IIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFL 577
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKL--SV-DAKKVDKVY 280
+ + D EV M E GV P+ S L+ SV D K+ +++Y
Sbjct: 578 NINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVGDMKRCEEIY 624
Score = 40.4 bits (93), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYG 229
++ + I +M + V P+ TF ++A+ A D++ +M + P +R+ G
Sbjct: 476 IEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCG 535
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+C+ G ++A M E GV P ++L+K ++ +D V E++ +
Sbjct: 536 TIVNGYCEEGKMEEALRFFYRMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEF 595
Query: 290 VRQVSESTFKIIEDWFDSV 308
+ TF + + + SV
Sbjct: 596 GVKPDVVTFSTLMNAWSSV 614
Score = 36.6 bits (83), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/190 (17%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 103 PEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG 161
P+ +L + + + S+ G++ +A+++++ + +G + +N L+ + G
Sbjct: 387 PDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLI--------KGYGKIG 438
Query: 162 DRENDSNLGLKRGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
E S L M+ D+ + PN+ T + + + E A+++V +M+S+G
Sbjct: 439 KLEESSRL--------LDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYG 490
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYE-VDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
+ P + ++ + ++G+T A + + M + V P ++ + K+++
Sbjct: 491 VKPDVVTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEA 550
Query: 280 YEILHRLRTL 289
+R++ L
Sbjct: 551 LRFFYRMKEL 560
Score = 34.7 bits (78), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 151 CKCGSESSENGDRENDSNLGLKRG-----FEIFQQMITDKVDPNEATFTSVARLAVAKED 205
C G+ + R N ++RG IF +I + P+ T+T++ ++
Sbjct: 310 CSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKH 369
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
L+ +++ G+ P + + + GN D+A ++ M ESG P +
Sbjct: 370 FHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNT 429
Query: 266 LLK 268
L+K
Sbjct: 430 LIK 432
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 111 LDMCSKRGDVFEAL-RLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
+D C K G F+ + + +D+ + NG+ + +N LL VCS E++ N
Sbjct: 310 IDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARN--------- 360
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+F +M +++ + ++ ++ ++AF+++ QM I P + SY
Sbjct: 361 -------LFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYS 413
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ GF K G D+A + M G+ + + LL + + ++ +IL + ++
Sbjct: 414 TVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASV 473
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 79/193 (40%), Gaps = 19/193 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+ +++ + G+ + YN ++ C K G E K+ + F +M
Sbjct: 286 EAISVFNSMKEYGLRPNLVTYNAVIDACG-KGGME--------------FKQVAKFFDEM 330
Query: 182 ITDKVDPNEATFTSVARLAVAKEDP--EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+ V P+ TF S+ LAV E A +L +M + I + SY L CK G
Sbjct: 331 QRNGVQPDRITFNSL--LAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGG 388
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
D A+E+ A M ++P S ++ A + D+ + +R L + ++
Sbjct: 389 QMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYN 448
Query: 300 IIEDWFDSVDAAE 312
+ + V +E
Sbjct: 449 TLLSIYTKVGRSE 461
Score = 37.0 bits (84), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 26/162 (16%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K G EAL L+ + R GI L + YN LL + + SE + + RE S +G
Sbjct: 416 IDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMAS-VG 474
Query: 171 LKRGFEIFQQMI-----TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+K+ + ++ K D + FT +MK + P L
Sbjct: 475 IKKDVVTYNALLGGYGKQGKYDEVKKVFT--------------------EMKREHVLPNL 514
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+Y + G+ K G +A E+ +G+ + SAL+
Sbjct: 515 LTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K GD+ A+ LY + R ++L+ Y L+ CK G
Sbjct: 205 IDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALID-GFCKKGE--------------- 248
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R E++ +M+ D+V+PN +T++ + D + A + +M + G+ + +YG
Sbjct: 249 MQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDITAYGV 308
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ G C G +A E+ M +S +VP+ + ++ + ++ + H+L
Sbjct: 309 IISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ + F M D + PN TFT + D E+A L K+M+ + + +Y
Sbjct: 179 LQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTA 238
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ GFCK G +A E+ + M E V P
Sbjct: 239 LIDGFCKKGEMQRAEEMYSRMVEDRVEP 266
Score = 34.3 bits (77), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
+SN G+ + +++ P+ ++F SV + A D+V M FG P +
Sbjct: 33 NSNCGI-LSLKFLAYLVSRGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDV 91
Query: 226 RSYGPALFGFCKLGNTDKA 244
SY + G C+ G+ A
Sbjct: 92 ISYNSLIDGHCRNGDIRSA 110
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 23/209 (11%)
Query: 97 KARRESPEG----VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
KARR P+ +L H L K G E L+ + G L YN+++ CK
Sbjct: 544 KARRFVPDARSYSILIHGL---IKAGFANETYELFYSMKEQGCVLDTRAYNIVI-DGFCK 599
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
CG + + +++ ++M T +P T+ SV + + A+ L
Sbjct: 600 CGK---------------VNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
++ KS I + Y + GF K+G D+AY + + + G+ P ++LL V
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKII 301
A+++++ ++ L ++ T+ I+
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGIL 733
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 26/219 (11%)
Query: 111 LDMCSKRGDVFEALRLYD-----DARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN 165
+D K G V +A ++Y+ D R+N I + N N R+
Sbjct: 454 IDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFF--------------NHGRKE 499
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225
D G +I++ MI P+ + +PE + +++K+ P
Sbjct: 500 D-------GHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDA 552
Query: 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
RSY + G K G ++ YE+ M E G V + + ++ KV+K Y++L
Sbjct: 553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612
Query: 286 LRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR 324
++T + + T+ + D +D + + ++ +K +
Sbjct: 613 MKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSK 651
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+FQQM +P FT++ R + + A L+ +MKS + + Y + F
Sbjct: 190 LFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFG 249
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
K+G D A++ + +G+ P+E ++++ + A ++D+ E+ L
Sbjct: 250 KVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL 299
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/196 (18%), Positives = 80/196 (40%), Gaps = 6/196 (3%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++G +F+++ + P+ +++ + + ++L MK G R+Y
Sbjct: 534 EKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIV 593
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ GFCK G +KAY++ M G P +++ ++D+ Y + ++
Sbjct: 594 IDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRI 653
Query: 292 QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQ 351
+++ + + D F V + L + E +++ G + W V+ +
Sbjct: 654 ELNVVIYSSLIDGFGKVGRIDEAYL------ILEELMQKGLTPNLYTWNSLLDALVKAEE 707
Query: 352 IDENGVCCSCNERLVC 367
I+E VC + L C
Sbjct: 708 INEALVCFQSMKELKC 723
Score = 41.2 bits (95), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 52/128 (40%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+ G+++ Q M K P + +T++ A +M L +QM+ G P + +
Sbjct: 149 LREGYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTT 208
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GF K G D A + M S + + + + KVD ++ H +
Sbjct: 209 LIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANG 268
Query: 291 RQVSESTF 298
+ E T+
Sbjct: 269 LKPDEVTY 276
Score = 39.7 bits (91), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 17/169 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G EA L + R+ G S YN +L C K G + ++
Sbjct: 322 GKFDEAYSLLERQRAKGSIPSVIAYNCIL-TCLRKMGK---------------VDEALKV 365
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F++M D PN +T+ + + + AF+L M+ G+ P +R+ + CK
Sbjct: 366 FEEMKKDAA-PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCK 424
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+A + M P+E +L+ +VD Y++ ++
Sbjct: 425 SQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKM 473
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 18/179 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D +K + EA L+++A+S I L+ Y+ L+ + +G
Sbjct: 629 IDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLI-----------------DGFGKVG 671
Query: 171 -LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+ + I ++++ + PN T+ S+ V E+ A + MK P +YG
Sbjct: 672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ G CK+ +KA+ M + G+ P + ++ A + + + R +
Sbjct: 732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKA 790
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 16/173 (9%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
+K G V AL L D+ +S+ + YNV C + G +
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNV--------CIDSFGKVGK--------VDMA 257
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++ F ++ + + P+E T+TS+ + + A ++ + ++ P +Y + G
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMG 317
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ G D+AY + G +P + +L KVD+ ++ ++
Sbjct: 318 YGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMK 370
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 20/218 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + EA + ++ G+T + + +N LL ++ + N++
Sbjct: 664 IDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLL---------DALVKAEEINEA--- 711
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
FQ M K PN+ T+ + AF ++M+ G+ P SY
Sbjct: 712 ----LVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTT 767
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K GN +A + +G VP+ +A+++ + + + + R
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRG 827
Query: 291 RQVSESTFKIIEDWFDSVD----AAEIGVLNWDVSKVR 324
+ T ++ D D AA +G + + K R
Sbjct: 828 LPIHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETGKAR 865
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + A L+++ GIT + YN+L+ N R +D
Sbjct: 270 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILI---------GGFCNAGRWDD---- 316
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
G ++ + MI K++PN TF+ + V + A +L K+M GI P +Y
Sbjct: 317 ---GAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ GFCK + DKA ++ M G P + L+ A ++D E+ ++
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKM 429
Score = 40.0 bits (92), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 52/131 (39%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + ++ M++ DPN TF + + +L ++M G+ +Y
Sbjct: 384 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 443
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ GFC+LG + A E+ M V P LL D + +K EI ++
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSK 503
Query: 291 RQVSESTFKII 301
++ + II
Sbjct: 504 MELDIGIYNII 514
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 58/134 (43%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ EIF+++ K++ + + + + A+DL + G+ P +++Y
Sbjct: 490 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIM 549
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
+ G CK G +A + M E G P+ + L++ + K +++ L+
Sbjct: 550 IGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGF 609
Query: 292 QVSESTFKIIEDWF 305
V ST K++ D
Sbjct: 610 SVDASTIKMVIDML 623
Score = 37.0 bits (84), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 2/133 (1%)
Query: 174 GFEIFQQMITDKVDPNEATF-TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
E+ +M+ P+ T T V L ++ ++ E A L+ +M +G P +YGP L
Sbjct: 177 ALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAE-AMLLIDKMVEYGCQPNAVTYGPVL 235
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292
CK G T A E+ M E + + + S ++ +D + + + +
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGIT 295
Query: 293 VSESTFKIIEDWF 305
+ T+ I+ F
Sbjct: 296 TNIITYNILIGGF 308
Score = 36.6 bits (83), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+FQ+M++ KV PN T+ + + E A ++ ++++ + + Y + G
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
C D A+++ + GV P
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKP 541
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
++++MI K+ PN TF V A D+++ MK +G P + SY + G+C
Sbjct: 210 VYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYC 269
Query: 237 KLGNTDKAYEVDA---HMGESGVVPEEPELSALL 267
KLG K Y+ DA M E+ V P + L+
Sbjct: 270 KLGGNGKMYKADAVLKEMVENDVSPNLTTFNILI 303
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M++ V PN T+ ++ + + A D+ +K G P R Y + +CKLG
Sbjct: 356 KMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLG 415
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
D + + M G+VP+ + L+
Sbjct: 416 KIDDGFALKEEMEREGIVPDVGTYNCLI 443
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
++F++M+ V PN ++ S+ A + +M S G+ P L +Y + G
Sbjct: 316 MKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALING 375
Query: 235 FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
FCK +A ++ + G VP + L+ K+D
Sbjct: 376 FCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKID 418
Score = 37.7 bits (86), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 17/141 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K G + + L ++ GI YN L+ + NG+ E L
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI--------AGLCRNGNIEAAKKL- 458
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
F Q+ T K P+ TF + K + A L+K+M G+ P+ +Y
Sbjct: 459 -------FDQL-TSKGLPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNI 510
Query: 231 ALFGFCKLGNTDKAYEVDAHM 251
+ G+CK GN A + M
Sbjct: 511 VMKGYCKEGNLKAATNMRTQM 531
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 55/139 (39%), Gaps = 16/139 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + EA+ + D S G+ + YN L+ NG +ND LK ++
Sbjct: 345 GKISEAISMRDKMVSAGVQPNLITYNALI-------------NGFCKNDM---LKEALDM 388
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F + P + + + F L ++M+ GI P + +Y + G C+
Sbjct: 389 FGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCR 448
Query: 238 LGNTDKAYEVDAHMGESGV 256
GN + A ++ + G+
Sbjct: 449 NGNIEAAKKLFDQLTSKGL 467
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
++ K G +A +++D+ R G++ + YN L+ G E +
Sbjct: 275 MNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLI-------GGLCRE---------MK 318
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L ++ QM +D ++PN T+ ++ A L + +KS G+ P L +Y
Sbjct: 319 LNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNI 378
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
+ GFC+ G+T A ++ M E G+ P + + L+ + ++K ++
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQL 430
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 21/217 (9%)
Query: 102 SPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP V+ L D C K+G++ +A L+ + G+ ++ Y VL+ N
Sbjct: 195 SPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLI-------------N 241
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
G +N K+GFE++++M D V PN T+ V + AF + +M+ G
Sbjct: 242 GLFKNGVK---KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERG 298
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
+ + +Y + G C+ ++A +V M G+ P + L+ K+ K
Sbjct: 299 VSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Query: 281 EILHRLRTLVRQVSESTFKIIEDWF----DSVDAAEI 313
+ L++ S T+ I+ F D+ AA++
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKM 395
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G + +AL L D +S G++ S YN+L+ S C R+ D++ K +
Sbjct: 352 GKLGKALSLCRDLKSRGLSPSLVTYNILV---SGFC---------RKGDTSGAAK----M 395
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
++M + P++ T+T + ++ E A L M+ G+ P + +Y + GFC
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCI 455
Query: 238 LGNTDKAYEVDAHMGESGVVPEE 260
G ++A + M E P E
Sbjct: 456 KGQMNEASRLFKSMVEKNCEPNE 478
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
+ E +FDL+ ++ FG P + Y + G CK G +KA ++ MG+ G+V E +
Sbjct: 178 EIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYT 237
Query: 265 ALL 267
L+
Sbjct: 238 VLI 240
Score = 39.3 bits (90), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+++ F++ ++ PN +T++ K + E A DL +M G+ R+Y
Sbjct: 179 IEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTV 238
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G K G + +E+ M E GV P
Sbjct: 239 LINGLFKNGVKKQGFEMYEKMQEDGVFP 266
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEM-AFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F+ M+ +PNE + ++ L KE A L+K+M+ + P + SY +
Sbjct: 465 LFKSMVEKNCEPNEVIYNTMI-LGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVL 523
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
CK + +A + M +SG+ P LS + + D+
Sbjct: 524 CKERKSKEAERLVEKMIDSGIDPSTSILSLISRAKNDS 561
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 16/162 (9%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EA+ +Y + G+ Q YN L++ S K G R ++ + LK M
Sbjct: 283 EAVGVYKKMKEEGVEPDQITYNTLIFGLS-KAG--------RVEEARMYLK-------TM 326
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ +P+ AT+TS+ K + A L+++M++ G P +Y L G CK
Sbjct: 327 VDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLM 386
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
DK E+ M SGV E + L++ V + KV + YE+
Sbjct: 387 DKGMELYEMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVF 428
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 67/175 (38%), Gaps = 22/175 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFE 176
G V EA L + + YN LL ++C CK L +E
Sbjct: 173 GRVDEAKDLMKELTEKHSPPDTYTYNFLLKHLCKCK-----------------DLHVVYE 215
Query: 177 IFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+M D V P+ +FT + ++ A LV ++ + G P Y + GF
Sbjct: 216 FVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGF 275
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
C L +A V M E GV P++ + L+ K +V E L+T+V
Sbjct: 276 CTLSKGSEAVGVYKKMKEEGVEPDQITYNTLI---FGLSKAGRVEEARMYLKTMV 327
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 62/135 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F +F+ M+ + + P+ + ++ + + A VK+M+ P R++ P +
Sbjct: 538 AFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIH 597
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
G+ K G+ ++ EV M G VP + L+ V+ ++++K EIL +
Sbjct: 598 GYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSA 657
Query: 294 SESTFKIIEDWFDSV 308
+E T+ I + SV
Sbjct: 658 NEHTYTKIMQGYASV 672
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 16/135 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D ++RGDV+EA L + G+ H Y + C S+ GD
Sbjct: 736 IDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISAC--------SKAGD-------- 779
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R + ++M V PN T+T++ + PE A ++MK+ GI P Y
Sbjct: 780 MNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHC 839
Query: 231 ALFGFCKLGNTDKAY 245
L + +AY
Sbjct: 840 LLTSLLSRASIAEAY 854
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 78/199 (39%), Gaps = 22/199 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR---- 173
GD +A + ++ G+ + Y LL C CK G S + S + R
Sbjct: 673 GDTGKAFEYFTRLQNEGLDVDIFTYEALLKAC-CKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 174 ----------------GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217
++ QQM + V P+ T+TS D A +++M+
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
+ G+ P +++Y + G+ + +KA M G+ P++ LL + +
Sbjct: 792 ALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIA 851
Query: 278 KVYEILHRLRTLVRQVSES 296
+ Y I + T+ +++ E+
Sbjct: 852 EAY-IYSGVMTICKEMVEA 869
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 16/142 (11%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174
SK G A +D+A+ TL+ Y ++Y C E +E RE + G+
Sbjct: 390 SKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEE-GIDAP 448
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG 234
I+ M+ +T VA D + + K++K G P + +YG +
Sbjct: 449 IAIYHTMMDG--------YTMVA-------DEKKGLVVFKRLKECGFTPTVVTYGCLINL 493
Query: 235 FCKLGNTDKAYEVDAHMGESGV 256
+ K+G KA EV M E GV
Sbjct: 494 YTKVGKISKALEVSRVMKEEGV 515
Score = 40.4 bits (93), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 43/98 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++R E+F M P TF + V K E A +++ +M G+ +Y
Sbjct: 605 MRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTK 664
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G+ +G+T KA+E + G+ + ALLK
Sbjct: 665 IMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLK 702
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E F++M + P +TS+ D + A V++MK GI L +Y
Sbjct: 325 MHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSV 384
Query: 231 ALFGFCKLGNTDKA 244
+ GF K G+ + A
Sbjct: 385 IVGGFSKAGHAEAA 398
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 65/132 (49%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
E++++MI + P+ T++S+ + D + L+K+M++ G+ P + ++ +
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIR 266
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
+ G ++AYE+ M + G P+ + L+ A+K+D E+ +++T +
Sbjct: 267 VLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKP 326
Query: 294 SESTFKIIEDWF 305
T+ + D F
Sbjct: 327 DRVTYITLLDRF 338
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 91/217 (41%), Gaps = 33/217 (15%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRE-----N 165
+D K G+ EA D R GI + H YN L+ CG D N
Sbjct: 370 VDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLI------CGLLRVHRLDDALELFGN 423
Query: 166 DSNLGLK--------------------RGFEIFQQMITDKVDPN-EATFTSVARLAVAKE 204
+LG+K E F++M T + PN A S+ LA A
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGR 483
Query: 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264
D E A + +K G+ P +Y + + K+G D+A ++ + M E+G P+ ++
Sbjct: 484 DRE-AKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVN 542
Query: 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+L+ A +VD+ +++ R++ + + + T+ +
Sbjct: 543 SLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTL 579
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 7/164 (4%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ E+F+ M+ PN TF ++ ++ +A ++ +M G P + +Y
Sbjct: 589 IQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNT 648
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+FG K G +A H + V P+ L LL V A ++ Y+I+ L
Sbjct: 649 IIFGLVKNGQVKEAM-CFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNF--LY 705
Query: 291 RQVSESTFKIIEDWFDSVDAAEIGVLN---WDVSKVREGIVRGG 331
+ ED S+ AE G+ N + V GI R G
Sbjct: 706 NCADQPANLFWEDLIGSI-LAEAGIDNAVSFSERLVANGICRDG 748
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/141 (20%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+F++M T + P+ T+ ++ D + +M+ G P + ++ +
Sbjct: 314 EVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDAL 373
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
CK GN +A++ M + G++P + L+ + ++D E+ + +L + +
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433
Query: 296 STFKIIEDWF----DSVDAAE 312
T+ + D++ DSV A E
Sbjct: 434 YTYIVFIDYYGKSGDSVSALE 454
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 6/117 (5%)
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
R+ DS +GL ++M T + PN TFT R+ A++++K+M G
Sbjct: 237 RDIDSVMGL------LKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCG 290
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
P + +Y + C D A EV M P+ LL D + +D V
Sbjct: 291 PDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSV 347
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++F+ M+ PN A + + + + A L K+M G+ P L++Y +
Sbjct: 912 QLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCL 971
Query: 236 CKLGNTDKAYEVDAHMGESGVVPE 259
C +G D+ + ESG+ P+
Sbjct: 972 CMVGRVDEGLHYFKELKESGLNPD 995
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273
K K G+ PKL +Y + G + + A +V + +G +P+ + LL +
Sbjct: 774 KFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKS 833
Query: 274 KKVDKVYEILHRLRT 288
K+D+++E+ + T
Sbjct: 834 GKIDELFELYKEMST 848
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 177 IFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+F++ D V P T+ + + + E+A D+ Q+KS G P + +Y L +
Sbjct: 771 LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAY 830
Query: 236 CKLGNTDKAYEV----DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
K G D+ +E+ H E+ + +S L+K +D Y+++
Sbjct: 831 GKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLM 882
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 84/223 (37%), Gaps = 19/223 (8%)
Query: 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL 126
G C A S + + SS G + + R E V ++ K D A L
Sbjct: 211 GCCPDAVSYTTVI--SSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFEL 268
Query: 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186
+ GI+ + Y+ L+ V C G ++ F QM+
Sbjct: 269 MREMVEKGISPNVISYSTLINVL-CNSGQ---------------IELAFSFLTQMLKRGC 312
Query: 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYGPALFGFCKLGNTDKAY 245
PN T +S+ + + A DL QM + FG+ P + +Y + GFC GN KA
Sbjct: 313 HPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAV 372
Query: 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
V +HM E G P +L+ +D I +++ T
Sbjct: 373 SVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLT 415
Score = 40.0 bits (92), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 48/119 (40%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
+R E+F ++ DP+ + V + + +M + + + MK G P + +Y
Sbjct: 128 ERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVL 187
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
L CK D A ++ M G P+ + ++ + V + E+ R +V
Sbjct: 188 LKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVV 246
Score = 39.3 bits (90), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 26/183 (14%)
Query: 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK------------- 152
+ H LD + +Y D + +G + YNVLL CK
Sbjct: 148 IYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKAL-CKNNKVDGAKKLLVE 206
Query: 153 ------CGSESSENGDRENDSNLGL-KRGFEIFQQMITDKVDPNEATFTSVARLAVAKED 205
C S + +GL K G E + ++ +P + + ++ + D
Sbjct: 207 MSNKGCCPDAVSYTTVISSMCEVGLVKEGRE-----LAERFEPVVSVYNALINGLCKEHD 261
Query: 206 PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265
+ AF+L+++M GI P + SY + C G + A+ M + G P LS+
Sbjct: 262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSS 321
Query: 266 LLK 268
L+K
Sbjct: 322 LVK 324
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 174 GFEIFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+++ QMI + PN + ++ + + + A + M+ G P +R+YG +
Sbjct: 335 ALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLI 394
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVP 258
GF K G+ D A + M SG P
Sbjct: 395 NGFAKRGSLDGAVYIWNKMLTSGCCP 420
Score = 33.1 bits (74), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 78/209 (37%), Gaps = 21/209 (10%)
Query: 114 CSKRGDVFEALRLYDDA-RSNGITLSQHHYNVLL--------YVCSCKCGSESSENGDRE 164
C RG F+AL L++ R G+ + YN L+ V + S E G
Sbjct: 326 CFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSP 385
Query: 165 NDSNLG-LKRGFE----------IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
N G L GF I+ +M+T PN +T++ + A L+
Sbjct: 386 NIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLI 445
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVD 272
+ M P + ++ + G C G D A +V M + P + LL
Sbjct: 446 EIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAK 505
Query: 273 AKKVDKVYEILHRLRTLVRQVSESTFKII 301
A ++++ Y + + + S ST+ +
Sbjct: 506 ANRIEEAYGLTREIFMRGVEWSSSTYNTL 534
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 53.5 bits (127), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227
N K ++ +M+ ++ P+ T+ + E AF +MK G+ P + +
Sbjct: 563 NGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMT 622
Query: 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
+ L+G CK GN D+AY M E G+ P + + L+ + D +K ++V ++
Sbjct: 623 HNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKL 677
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G EA L+DD R+ I S YN L+ C S + E R
Sbjct: 386 KMGKFVEASLLFDDLRAGDIHPSIVTYNTLI---DGLCESGNLEGAQR------------ 430
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M T + P+ T+T++ + V + MA ++ +M GI P +Y G
Sbjct: 431 -LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGE 489
Query: 236 CKLGNTDKAYEVDAHM 251
+LG++DKA+ + M
Sbjct: 490 LRLGDSDKAFRLHEEM 505
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L + E +++ + P+ T+T+V R + +MA +L +M + P + +Y
Sbjct: 531 LVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFV 590
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
++G K G ++A++ M + GV P +ALL A +D+ Y L ++
Sbjct: 591 LIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKM 646
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 17/170 (10%)
Query: 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGL--- 171
SK G + EA R + D R +G ++ + +N L+ CK G G + N G+
Sbjct: 284 SKNGKMEEARRFHGDMRRSGFAVTPYSFNPLI-EGYCKQGLFDDAWGVTDEMLNAGIYPT 342
Query: 172 KRGFEIFQQMITD--KVDPNEATFTSVARLAVAKEDPEM-----------AFDLVKQMKS 218
+ I+ + D ++D +S+A V + M A L +++
Sbjct: 343 TSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDDLRA 402
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
I P + +Y + G C+ GN + A + M + P+ + L+K
Sbjct: 403 GDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVK 452
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L+R +I+ +M ++ +E T+ + E A M+ G S+ P
Sbjct: 254 LERVDKIWLEMKRRNIEFSEVTYNILINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNP 313
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
+ G+CK G D A+ V M +G+ P + + D ++D E+L
Sbjct: 314 LIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELL 366
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179
V EA++ +DD + NG+ + Y+V++ C C +E +E G E F
Sbjct: 604 VEEAIQFWDDCKRNGMLPDVYTYSVMIDGC---CKAERTEEGQ-------------EFFD 647
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M++ V PN + + R MA +L + MK GI P +Y + G +
Sbjct: 648 EMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 707
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALL 267
++A + M G+ P +AL+
Sbjct: 708 RVEEAKLLFEEMRMEGLEPNVFHYTALI 735
Score = 40.0 bits (92), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 44/106 (41%)
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
++ V P+ FT+ E A L +M+ G+ P + ++ + G G
Sbjct: 264 VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGR 323
Query: 241 TDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
D+A+ M E G+ P S L+K AK++ Y +L +
Sbjct: 324 YDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEM 369
Score = 38.9 bits (89), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 32/260 (12%)
Query: 95 KKKARRESPEGVLRHK--LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K+ ++ P V+ + +D + G + +A+ + D S G++L+ YN L+
Sbjct: 367 KEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI---KGY 423
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQ------------------------QMITDKVDP 188
C + ++N +R L + GF + Q +M+ + P
Sbjct: 424 CKNGQADNAERLLKEMLSI--GFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSP 481
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
T++ A +L Q + G R+ L G C+ G D+A+ +
Sbjct: 482 GGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQ 541
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308
+ G V + + L+ KK+D+ + L + + T+ I+ ++
Sbjct: 542 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNM 601
Query: 309 DAAEIGVLNWDVSKVREGIV 328
+ E + WD K R G++
Sbjct: 602 NKVEEAIQFWDDCK-RNGML 620
Score = 37.0 bits (84), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/125 (19%), Positives = 55/125 (44%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
F ++M+ ++P T++ + + + A+ ++K+M G PP + Y +
Sbjct: 327 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLID 386
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293
F + G+ +KA E+ M G+ + L+K + D +L + ++ V
Sbjct: 387 SFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNV 446
Query: 294 SESTF 298
++ +F
Sbjct: 447 NQGSF 451
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 172 KRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ F +F +++ +D PN T+TS+ ++ A L +MK G+ P + +Y
Sbjct: 339 EKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTT 398
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G CK G+ +AYE+ MG+ G +P +A + + + YE+L++ +
Sbjct: 399 LINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCG 458
Query: 291 RQVSESTFKII 301
+ T+ I+
Sbjct: 459 LEADGVTYTIL 469
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K +FQ +++ + P + T+TS+ + D ++A MK G P +YG
Sbjct: 514 MKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGS 573
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260
+ G CK D+A ++ M + G+ P E
Sbjct: 574 LISGLCKKSMVDEACKLYEAMIDRGLSPPE 603
Score = 39.3 bits (90), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R F++MI PN FTS+ K + AF+++++M G P + ++
Sbjct: 268 VNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 327
Query: 231 ALFGFCKLGNTDKAYEV 247
+ G CK G T+KA+ +
Sbjct: 328 LIDGLCKRGWTEKAFRL 344
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 33/183 (18%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D K+ EA L + A S G+ Y +L+ + ++ND N
Sbjct: 435 IDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILI------------QEQCKQNDINQA 482
Query: 171 L-------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
L K GFE ++ N + R KE E F LV S G+ P
Sbjct: 483 LAFFCRMNKTGFEADMRL-------NNILIAAFCRQKKMKES-ERLFQLVV---SLGLIP 531
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD---KVY 280
+Y + +CK G+ D A + +M G VP+ +L+ VD K+Y
Sbjct: 532 TKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLY 591
Query: 281 EIL 283
E +
Sbjct: 592 EAM 594
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/196 (17%), Positives = 89/196 (45%), Gaps = 19/196 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNL 169
LD ++ G++FE ++Y ++ G + Y +++ +C K ++ ++N
Sbjct: 864 LDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANF 923
Query: 170 GL------------------KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211
+ K+ +++Q++ ++P+E T+ ++ + PE +
Sbjct: 924 KVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYL 983
Query: 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271
L++QM++ G+ PKL +Y + F K ++A ++ + G+ + ++K+S
Sbjct: 984 LMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISR 1043
Query: 272 DAKKVDKVYEILHRLR 287
D+ K ++L ++
Sbjct: 1044 DSGSDSKAEKLLQMMK 1059
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 24/171 (14%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182
A+ L D R++G+ YN LL CS DSN L ++F+ M
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACS--------------RDSN--LDGAVKVFEDME 324
Query: 183 TDKVDPNEATFTSV----ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238
+ P+ T+ ++ R +A E + +L ++K F P +Y L+ F +
Sbjct: 325 AHRCQPDLWTYNAMISVYGRCGLAAEAERLFMEL--ELKGFF--PDAVTYNSLLYAFARE 380
Query: 239 GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
NT+K EV M + G +E + ++ + ++D ++ ++ L
Sbjct: 381 RNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGL 431
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 87/184 (47%), Gaps = 21/184 (11%)
Query: 123 ALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180
A ++DD G++L+ +NVL+ Y K L+ + ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGK------------------LEDALGMLER 229
Query: 181 MITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
M+++ KV+P+ T+ ++ + K +L+ MK G+ P +Y ++G+CKLG
Sbjct: 230 MVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLG 289
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299
+ +A+++ M ++ V+P+ + L+ +A + + E++ +++L Q T+
Sbjct: 290 SLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYN 349
Query: 300 IIED 303
+ D
Sbjct: 350 TLID 353
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 17/181 (9%)
Query: 102 SPEGVLRHKLDMCS-KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSEN 160
SP+ V H L K GD+ AL + + GI ++ N +L CK +
Sbjct: 413 SPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDAL-CK----ERKL 467
Query: 161 GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220
+ N N KRGF + +E T+ ++ +E E A ++ +MK
Sbjct: 468 DEAHNLLNSAHKRGFIV-----------DEVTYGTLIMGFFREEKVEKALEMWDEMKKVK 516
Query: 221 IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVY 280
I P + ++ + G C G T+ A E + ESG++P++ ++++ +V+K +
Sbjct: 517 ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAF 576
Query: 281 E 281
E
Sbjct: 577 E 577
Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 91/238 (38%), Gaps = 27/238 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK-RGFE 176
G + E L L D +S + YN L+ C LGL +
Sbjct: 324 GSMREGLELMDAMKSLKLQPDVVTYNTLIDGCF-----------------ELGLSLEARK 366
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGPALFGF 235
+ +QM D V N+ T + +E E VK++ G P + +Y + +
Sbjct: 367 LMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAY 426
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295
K+G+ A E+ MG+ G+ L+ +L +K+D+ + +L+ V E
Sbjct: 427 LKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDE 486
Query: 296 STFKIIEDWFDSVDAAEIGVLNWD-VSKVRE-------GIVRGGGGWHGQGWLGSGKW 345
T+ + F + E + WD + KV+ + GG HG+ L K+
Sbjct: 487 VTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKF 544
Score = 41.2 bits (95), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 16/146 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
L SK+G + + L D + NG+ ++ YN L+Y CK GS
Sbjct: 247 LKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVY-GYCKLGS--------------- 290
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK F+I + M V P+ T+ + +L+ MKS + P + +Y
Sbjct: 291 LKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNT 350
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGV 256
+ G +LG + +A ++ M GV
Sbjct: 351 LIDGCFELGLSLEARKLMEQMENDGV 376
Score = 33.9 bits (76), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 84/203 (41%), Gaps = 16/203 (7%)
Query: 97 KARRESPEGVLRHKL-DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155
K+ + P+ V + L D C + G EA +L + ++G+ +Q +N+ L C
Sbjct: 337 KSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISL---KWLCKE 393
Query: 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215
E E R+ + + GF P+ T+ ++ + + D A +++++
Sbjct: 394 EKREAVTRKVKELVDM-HGF-----------SPDIVTYHTLIKAYLKVGDLSGALEMMRE 441
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
M GI + L CK D+A+ + + G + +E L+ +K
Sbjct: 442 MGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEK 501
Query: 276 VDKVYEILHRLRTLVRQVSESTF 298
V+K E+ ++ + + STF
Sbjct: 502 VEKALEMWDEMKKVKITPTVSTF 524
>sp|Q9SV26|PP297_ARATH Pentatricopeptide repeat-containing protein At4g01030,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H65 PE=3
SV=2
Length = 768
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + +M + + P+ T+ S+A PE A D++ +MK G+ P + S+
Sbjct: 307 LKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEKGVAPNVVSWTA 366
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
G K GN A +V M E GV P +S LLK+
Sbjct: 367 IFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKI 405
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 16/176 (9%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+DM +RG + AL + G+ LS + YN L+ CK G S+ G
Sbjct: 409 IDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLIN-GHCKFGDISAAEG--------- 458
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+MI K++P T+TS+ +K A L +M GI P + ++
Sbjct: 459 ------FMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTT 512
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G + G A ++ M E V P + +++ + + K +E L +
Sbjct: 513 LLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM 568
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 54/132 (40%), Gaps = 19/132 (14%)
Query: 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173
CSK G + +ALRLY + GI S + + LL GL R
Sbjct: 483 CSK-GKINKALRLYHEMTGKGIAPSIYTFTTLL-----------------SGLFRAGLIR 524
Query: 174 -GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
++F +M V PN T+ + + D AF+ +K+M GI P SY P +
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584
Query: 233 FGFCKLGNTDKA 244
G C G +A
Sbjct: 585 HGLCLTGQASEA 596
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
G E+ +M+ + P+EA +S+ + E A +LVK++ FG+ P L Y +
Sbjct: 316 GLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALID 375
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK +A + MG+ G+ P + S L+ + K+D L +
Sbjct: 376 SLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEM 428
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
E+ +MI D V P+ T+T++ + D + A +L M GI P +Y + G
Sbjct: 808 ELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGC 867
Query: 236 CKLGNTDKAYEVDAHMGESGVVP 258
C G KA E+ M G++P
Sbjct: 868 CVAGEMGKATELRNEMLRQGLIP 890
Score = 40.8 bits (94), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 17/188 (9%)
Query: 100 RESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS 158
R SP E + ++ KRG + EAL L G++ + YN L+ +S
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALI---------DSL 377
Query: 159 ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218
G + +++ L +F +M + PN+ T++ + + + + A + +M
Sbjct: 378 CKGRKFHEAEL-------LFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVD 430
Query: 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278
G+ + Y + G CK G+ A A M + P ++L+ K++K
Sbjct: 431 TGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINK 490
Query: 279 VYEILHRL 286
+ H +
Sbjct: 491 ALRLYHEM 498
Score = 39.7 bits (91), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 174 GFEIFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
G +F+ MIT + P T +++ V +A +L M S GI P + Y +
Sbjct: 175 GVLVFKMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVI 234
Query: 233 FGFCKLGNTDKAYEVDAHMGESG----VVPEEPELSALLK 268
C+L + +A E+ AHM +G +VP + L K
Sbjct: 235 RSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCK 274
Score = 37.0 bits (84), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 19/171 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNL----- 169
+ GD+ +A + GI + Y L++ +C SE+ D + N
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEI 613
Query: 170 ---GLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216
GL GF + Q+M+ VD + + + ++ +D ++ F L+K+M
Sbjct: 614 CYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEM 673
Query: 217 KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
G+ P Y + K G+ +A+ + M G VP E +A++
Sbjct: 674 HDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVI 724
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 69/169 (40%), Gaps = 20/169 (11%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+ G + EAL + + G+ L Y VL+ S ++ DR K F
Sbjct: 624 REGKLEEALSVCQEMVQRGVDLDLVCYGVLI--------DGSLKHKDR--------KLFF 667
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+ ++M + P++ +TS+ D + AF + M + G P +Y + G
Sbjct: 668 GLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGL 727
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPE----LSALLKLSVDAKKVDKVY 280
CK G ++A + + M VP + L L K VD +K +++
Sbjct: 728 CKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELH 776
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 42/95 (44%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
N AT+ + R + E A +L+ +M G+ P +Y + C+ + KA E+
Sbjct: 785 ANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIEL 844
Query: 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
M E G+ P+ + L+ A ++ K E+
Sbjct: 845 WNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATEL 879
>sp|Q9FLJ4|PP440_ARATH Pentatricopeptide repeat-containing protein At5g61400
OS=Arabidopsis thaliana GN=At5g61400 PE=2 SV=1
Length = 654
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G++ EA+ L + S ++ Y +L+ + C + +R
Sbjct: 351 KSGNMLEAVGLLSEMESLNLSPDVFTYTILI---NGLCIEDQVAEANR------------ 395
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
+FQ+M +++ P+ AT+ S+ + + E A DL +M + G+ P + ++ + G+
Sbjct: 396 -LFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGY 454
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
C + + A + M G+VP+ +AL+
Sbjct: 455 CNVRDIKAAMGLYFEMTIKGIVPDVVTYTALI 486
Score = 39.3 bits (90), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/153 (19%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 109 HKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKCGSESSENGDREND 166
+ LD+C + + EA ++++ + +G+ + + Y+ ++ Y CK G+
Sbjct: 240 YILDLC-RDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGY---CKTGN----------- 284
Query: 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226
+++ + ++++++ ++ PN F ++ + A L M FG+ P L
Sbjct: 285 ----VRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLY 340
Query: 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
Y + G CK GN +A + + M + P+
Sbjct: 341 VYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPD 373
>sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830,
chloroplastic OS=Arabidopsis thaliana
GN=At4g34830/At4g34820 PE=2 SV=2
Length = 1089
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 18/180 (10%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C++ G V +A Y RS + + +N L+ C ++G
Sbjct: 544 IDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACG--------QSG--------A 587
Query: 171 LKRGFEIFQQMI--TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY 228
+ R F++ +M T +DP+ + ++ + E A ++ + + +GI Y
Sbjct: 588 VDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVY 647
Query: 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
A+ K G+ D A + M E V P+E SAL+ ++ AK +D+ + IL ++
Sbjct: 648 TIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKS 707
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 23/181 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ +C+ D+ A + + +G+T Y L+ C+ K G
Sbjct: 474 MSVCASSQDIEGARGVLRLVQESGMTADCKLYTTLISSCA-KSGK--------------- 517
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ FE+F QM V+ N TF ++ AF ++S + P R
Sbjct: 518 VDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPD-RVVFN 576
Query: 231 ALFGFC-KLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLSVDAKKVDK---VYEILH 284
AL C + G D+A++V A M + P+ + AL+K +A +V++ VY+++H
Sbjct: 577 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACCNAGQVERAKEVYQMIH 636
Query: 285 R 285
+
Sbjct: 637 K 637
Score = 39.3 bits (90), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+ C G V A +Y GI + Y + + CS ++GD +
Sbjct: 616 MKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCS--------KSGDWD------ 661
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
I++ M V P+E F+++ +A + + AF +++ KS GI SY
Sbjct: 662 --FACSIYKDMKEKDVTPDEVFFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSS 719
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ C + KA E+ + + P ++AL+ + ++ K E L ++TL
Sbjct: 720 LMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLG 779
Query: 291 RQVSESTFKII 301
+ + T+ ++
Sbjct: 780 LKPNTITYSML 790
Score = 36.2 bits (82), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 37/79 (46%)
Query: 210 FDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269
F++ QM + G+ L ++G + G + G KA+ + V P+ +AL+
Sbjct: 522 FEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRSKNVKPDRVVFNALISA 581
Query: 270 SVDAKKVDKVYEILHRLRT 288
+ VD+ +++L ++
Sbjct: 582 CGQSGAVDRAFDVLAEMKA 600
Score = 34.7 bits (78), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+K F F ++I ++P +TF + + + +D E A +++ ++ G+ + Y
Sbjct: 451 AVKEAFR-FTKLI---LNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTADCKLYT 506
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ K G D +EV M SGV AL+ A +V K + LR+
Sbjct: 507 TLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAYGILRS 565
Score = 34.3 bits (77), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNL----------- 169
EA + DA+S GI L Y+ L+ C+ K ++ E ++ L
Sbjct: 697 EAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKIKSIKLRPTISTMNALI 756
Query: 170 -------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
L + E ++ T + PN T++ + + K+D E++F L+ Q K G+
Sbjct: 757 TALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQAKGDGVS 816
Query: 223 PKL 225
P L
Sbjct: 817 PNL 819
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ F + ++MI P+ +T++ V E+AF L ++MK G+ + +Y
Sbjct: 465 EKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ FCK G ++A + M E G P +AL+ + AKKV E+ +
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETM 579
Score = 40.0 bits (92), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 25/199 (12%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG---------SESSENG 161
LD K V EA +L D G +Q Y+ L+ CK G +E SE+G
Sbjct: 646 LDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL-CKVGKLDEAQEVKTEMSEHG 704
Query: 162 DREN--------DSNLGLKR---GFEIFQQMITDKVDPNEATFTSV--ARLAVAKEDPEM 208
D +KR ++ +M+ + PN +T + V K D
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDE-- 762
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
A+ L++ M+ G P + +Y + GF +G + E+ MG GV P L+
Sbjct: 763 AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLID 822
Query: 269 LSVDAKKVDKVYEILHRLR 287
+D + +L ++
Sbjct: 823 HCCKNGALDVAHNLLEEMK 841
Score = 39.3 bits (90), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F +M PN T+T++ + + A +L + M S G P + +Y + G CK
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600
Query: 238 LGNTDKAYEVDAHMGESGVVPE 259
G +KA ++ M S VP+
Sbjct: 601 AGQVEKACQIFERMCGSKDVPD 622
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 44/109 (40%)
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+Q + PN T+ ++ E A L+ M G P Y + G CK
Sbjct: 627 FKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCK 686
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+G D+A EV M E G S+L+ K+ D ++L ++
Sbjct: 687 VGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKM 735
Score = 33.9 bits (76), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 21/171 (12%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDREN-------DSNLG 170
G + L L + S G+ + Y VL+ C CK G+ + E G
Sbjct: 793 GKIETCLELLERMGSKGVAPNYVTYRVLIDHC-CKNGALDVAHNLLEEMKQTHWPTHTAG 851
Query: 171 LKRGFEIFQQMITDKV-------DPNEATFTSVARLAV----AKEDPEMAFDLVKQMKSF 219
++ E F + + + + A F SV RL + + EMA L++++ +F
Sbjct: 852 YRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATF 911
Query: 220 G--IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ +Y + C + A+++ + M + GV+PE +L+K
Sbjct: 912 SATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIK 962
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
L++ FE+F+ V PN ++ + + +D +A+ L +M + P + SY
Sbjct: 171 LQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKI 230
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
+ GFC+ G + A E+ M G VP+ + LL ++ + Y++L R++
Sbjct: 231 LIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMK 287
Score = 39.3 bits (90), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 19/174 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVL---------LYVCSCKCGSESSENGDR 163
+ S RG + +A L+ +R +G+ + YN+L L + G +
Sbjct: 164 LVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVP 223
Query: 164 ENDSNLGLKRGF----------EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV 213
+ DS L +GF E+ M+ P+ ++T++ K A+ L+
Sbjct: 224 DVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLL 283
Query: 214 KQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
+MK G P L Y + GFC+ A +V M +G P L+
Sbjct: 284 CRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLI 337
>sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040,
mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2
SV=1
Length = 517
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ + +F++M + N T+TS+ + + + + +A L+ QM G+ P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291
L CK GN DKAY V M E + P+ ++L+ + +V + ++ ++
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDMKGKEC 461
Query: 292 QVSESTFKII 301
E TFK I
Sbjct: 462 CPDELTFKFI 471
Score = 41.2 bits (95), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 20/182 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
+A RL+++ R G+ ++ Y L+ + RE +S++ K + QM
Sbjct: 343 KAYRLFEEMRQKGMVMNVVTYTSLI------------KAFLREGNSSVAKK----LLDQM 386
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
+ P+ +T++ + + A+ + M I P SY + G C+ G
Sbjct: 387 TELGLSPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGRV 446
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR----TLVRQVSEST 297
+A ++ M P+E ++ + KK+ Y++ ++ TL R VS++
Sbjct: 447 TEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKVWDQMMDKGFTLDRDVSDTL 506
Query: 298 FK 299
K
Sbjct: 507 IK 508
Score = 39.7 bits (91), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 176 EIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLV-KQMKSFGIPPKLRSYGPALF 233
EI+ MI V P N+A V L A++ ++A+++V +++KS + Y +
Sbjct: 170 EIWNAMIRSGVSPDNKACAALVVGLCHARK-VDLAYEMVAEEIKSARVKLSTVVYNALIS 228
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
GFCK G +KA + ++M + G P+ + LL D
Sbjct: 229 GFCKAGRIEKAEALKSYMSKIGCEPDLVTYNVLLNYYYD 267
Score = 37.0 bits (84), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD-LVKQMKSFGIPPK 224
D+N+ LKR + +M+ + + ++ + + P+ ++ +VK+M+ G
Sbjct: 267 DNNM-LKRAEGVMAEMVRSGIQLDAYSYNQLLKRHCRVSHPDKCYNFMVKEMEPRGFCDV 325
Query: 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL-------SVDAKKVD 277
+ SY + FC+ NT KAY + M + G+V ++L+K SV K +D
Sbjct: 326 V-SYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLD 384
Query: 278 KVYEI 282
++ E+
Sbjct: 385 QMTEL 389
Score = 34.3 bits (77), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279
G P + SY + G + G A E+ M SGV P+ +AL+ A+KVD
Sbjct: 144 GREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSPDNKACAALVVGLCHARKVDLA 203
Query: 280 YEIL 283
YE++
Sbjct: 204 YEMV 207
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 173 RGFEIFQQMITDKVDPNEATFTS-VARLAVAKE--DPEMAFDLVKQMKSFGIPPKLRSYG 229
+G E+F +M D++ P+ + + L K D E FD +M + + P L +Y
Sbjct: 197 KGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFD---EMLARRLLPSLITYN 253
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
+ G+CK GN +K+++V M + P + LLK A V+ +L ++ L
Sbjct: 254 TLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDL 313
Query: 290 VRQVSESTFKIIEDWFDSVDAAEIGVLNWDVS 321
TF I+ D + S + AE + ++ +
Sbjct: 314 GFVPDAFTFSILFDGYSSNEKAEAALGVYETA 345
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
++ F++ ++M D ++P+ TF ++ + E A +++K+MK G P ++
Sbjct: 266 EKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSIL 325
Query: 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
G+ + A V +SGV S LL K++K EIL R
Sbjct: 326 FDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGR 379
Score = 37.4 bits (85), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 25/146 (17%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+V + LY++ + +GI + Y++L+ +C+ K G E+
Sbjct: 613 GNVQRCIALYEEMKRSGIKPTLKTYHLLISLCT---------------------KEGIEL 651
Query: 178 FQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+++ + + P+ + V D E AF+L KQM I +Y + G
Sbjct: 652 TERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQL 711
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPE 262
K+G K EV + + E EPE
Sbjct: 712 KVG---KLCEVRSLIDEMNAREMEPE 734
Score = 34.3 bits (77), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 16/156 (10%)
Query: 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDR 163
E + +D ++GD+ A + G+ YN L+ C+ G EN ++
Sbjct: 389 EVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRF-CELGE--MENAEK 445
Query: 164 ENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223
E +M V P+ T+ + K + + FD++K+M+ G P
Sbjct: 446 E-------------VNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMP 492
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259
+ SYG + CK +A V M + GV P+
Sbjct: 493 NVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPK 528
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ-MKSFGIPPKLRSYGPALF 233
F+I ++M + PN ++ ++ + K + +VK+ M+ G+ PK+R Y +
Sbjct: 479 FDILKEMEDNGTMPNVVSYGTLIN-CLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLID 537
Query: 234 GFCKLGNTDKAYEVDAHMGESGV 256
G C G + A+ M + G+
Sbjct: 538 GCCSKGKIEDAFRFSKEMLKKGI 560
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 81/211 (38%), Gaps = 25/211 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D C +G + +A R + GI L+ YN L+ S +E+ E S G
Sbjct: 536 IDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLE-ISRKG 594
Query: 171 LK--------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
LK R ++++M + P T+ + L KE E+
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLC-TKEGIELTE 653
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270
L +M + P L Y L + G+ +KA+ + M E + ++ ++L+
Sbjct: 654 RLFGEM---SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQ 710
Query: 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+ K+ +V ++ + + T+ II
Sbjct: 711 LKVGKLCEVRSLIDEMNAREMEPEADTYNII 741
>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230
OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
Length = 757
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 16/171 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
+RG A R ++ S G+ ++H YN++L+ +L L+
Sbjct: 232 RRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFL----------------SLRLETAL 275
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
F+ M T + P++ATF ++ + + A L +MK I P + SY + G+
Sbjct: 276 RFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGY 335
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ D + M SG+ P S LL DA K+ + IL +
Sbjct: 336 LAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNM 386
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 26/178 (14%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G V E+++++ + G+ + YN L V L+RG
Sbjct: 197 KAGIVQESVKIFQKMKDLGVERTIKSYNSLFKVI---------------------LRRGR 235
Query: 176 EI-----FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ F +M+++ V+P T+ + E A + MK+ GI P ++
Sbjct: 236 YMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNT 295
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
+ GFC+ D+A ++ M + + P + ++K + +VD I +R+
Sbjct: 296 MINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRS 353
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 80/196 (40%), Gaps = 17/196 (8%)
Query: 111 LDMCSKRGDVFEALR-LYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL 169
++ C++ G +E L L+ + R GI YN LL C+ + + +E
Sbjct: 218 INACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAE---------- 267
Query: 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
+F+ M + P+ T++ + E DL+ +M S G P + SY
Sbjct: 268 ------MVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYN 321
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289
L + K G+ +A V M +G P S LL L + + D V ++ +++
Sbjct: 322 VLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS 381
Query: 290 VRQVSESTFKIIEDWF 305
+T+ I+ + F
Sbjct: 382 NTDPDAATYNILIEVF 397
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ G E+F++M + N T+ ++ + D +MA + K+M S G+PP + +Y
Sbjct: 411 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSI 470
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277
L G CK G +KA V ++ +S + P+ + +++ A KV+
Sbjct: 471 LLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVE 517
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 80/194 (41%), Gaps = 16/194 (8%)
Query: 93 KSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152
K +K + E+ + +D +V +AL L+ + + GI + YN L+ C C
Sbjct: 244 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR-CLCN 302
Query: 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDL 212
G R +D++ + MI K++PN TF+++ V + A L
Sbjct: 303 YG--------RWSDAS-------RLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKL 347
Query: 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272
+M I P + +Y + GFC D+A + M P + L+K
Sbjct: 348 YDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCK 407
Query: 273 AKKVDKVYEILHRL 286
AK+V++ E+ +
Sbjct: 408 AKRVEEGMELFREM 421
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 33/81 (40%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + QM + PN TF ++ A L+ +M + G P L +YG
Sbjct: 166 ISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 225
Query: 231 ALFGFCKLGNTDKAYEVDAHM 251
+ G CK G+ D A + M
Sbjct: 226 VVNGLCKRGDIDLALSLLKKM 246
Score = 36.6 bits (83), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD A +++ S+G+ Y++LL CK G L++ +
Sbjct: 444 GDCDMAQKIFKKMVSDGVPPDIITYSILLDGL-CKYGK---------------LEKALVV 487
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ + K++P+ T+ + E +DL + G+ P + Y + GFC+
Sbjct: 488 FEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCR 547
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G ++A + M E G +P + L++
Sbjct: 548 KGLKEEADALFREMKEDGTLPNSGTYNTLIR 578
Score = 36.6 bits (83), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLV----KQMKSFGIPP 223
+L L ++F +M+ + P+ F + A+AK + FDLV ++M++ I
Sbjct: 58 DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLS-AIAKMNK---FDLVISLGERMQNLRISY 113
Query: 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283
L SY + FC+ A V M + G P+ LS+LL K++ + ++
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 173
Query: 284 HRLRTLVRQVSESTF 298
++ + Q + TF
Sbjct: 174 DQMFVMEYQPNTVTF 188
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 16/173 (9%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGF 175
K G + EA++ +D S+G + +N++L C G R D+
Sbjct: 286 KEGRLDEAIKFLNDMPSSGCQPNVITHNIILR-SMCSTG--------RWMDAE------- 329
Query: 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235
++ M+ P+ TF + K A D++++M G P SY P L GF
Sbjct: 330 KLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGF 389
Query: 236 CKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288
CK D+A E M G P+ + +L KV+ EIL++L +
Sbjct: 390 CKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 56/131 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ R E ++M++ P+ T+ ++ E A +++ Q+ S G P L +Y
Sbjct: 395 MDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNT 454
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ G K G T KA ++ M + P+ S+L+ KVD+ + H +
Sbjct: 455 VIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514
Query: 291 RQVSESTFKII 301
+ + TF I
Sbjct: 515 IRPNAVTFNSI 525
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK+ E+ +M+ P+ T+T + A L+ +M+ G P + +Y
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G CK G D+A + M SG P
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQP 307
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/114 (19%), Positives = 46/114 (40%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ ++ +M + P+ T++S+ + + A + + GI P ++ +
Sbjct: 467 KAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIM 526
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
G CK TD+A + M G P E + L++ + E+L+ L
Sbjct: 527 LGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNEL 580
Score = 36.6 bits (83), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%)
Query: 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257
R V + E F ++ M G P + + GFC+LG T KA ++ + SG V
Sbjct: 110 RQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAV 169
Query: 258 PEEPELSALLKLSVDAKKVDKVYEILHRL 286
P+ + ++ A +++ +L R+
Sbjct: 170 PDVITYNVMISGYCKAGEINNALSVLDRM 198
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
++ G E+F++M + N T+ + + D +MA ++ K+M S G+PP + +Y
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
L G CK G +KA V ++ S + P + +++ A KV+ +++ L
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL 527
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 37/88 (42%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ + QM PN TF ++ A L+ +M + G P L +YG
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVP 258
+ G CK G+TD A+ + M + + P
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGKLEP 254
Score = 41.6 bits (96), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 18/184 (9%)
Query: 105 GVLRHK--LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGD 162
GVL + +D K + +AL L+ + + GI + Y+ L+ SC C N
Sbjct: 255 GVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI---SCLC------NYG 305
Query: 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
R +D++ + MI K++P+ TF+++ V + A L +M I
Sbjct: 306 RWSDAS-------RLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P + +Y + GFC D+A ++ M P+ + L+K K+V++ E+
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Query: 283 LHRL 286
+
Sbjct: 419 FREM 422
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 31/199 (15%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
GD A ++ + S+G+ + YN LL CK G L++ +
Sbjct: 445 GDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL-CKNGK---------------LEKAMVV 488
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
F+ + K++P T+ + E +DL + G+ P + +Y + GFC+
Sbjct: 489 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCR 548
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297
G+ ++A + M E G +P + L++ RLR R+ S
Sbjct: 549 KGSKEEADALFKEMKEDGTLPNSGCYNTLIR---------------ARLRDGDREASAEL 593
Query: 298 FKIIEDWFDSVDAAEIGVL 316
K + + DA+ IG++
Sbjct: 594 IKEMRSCGFAGDASTIGLV 612
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
Query: 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP-EM 208
S K + E R S L L +F +M+ + P+ F+ + A+AK + ++
Sbjct: 41 SGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLS-AIAKMNKFDV 99
Query: 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
L +QM++ GIP +Y + FC+ A V M + G P LS+LL
Sbjct: 100 VISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLN 159
Query: 269 LSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301
+K++ + ++ ++ Q + TF +
Sbjct: 160 GYCHSKRISEAVALVDQMFVTGYQPNTVTFNTL 192
Score = 40.4 bits (93), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 41/91 (45%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC 236
+ +M+ P+ T+ V + D ++AF+L+ +M+ + P + Y + G C
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 267
Query: 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
K + D A + M G+ P S+L+
Sbjct: 268 KYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298
>sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420,
mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2
SV=1
Length = 509
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 6/193 (3%)
Query: 133 NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192
+GI + YNVLL C+ S E N N ++F +M ++P+ +
Sbjct: 236 SGIEPNVVTYNVLLNGI-CRTASLHPEERFERNVRN-----AEKVFDEMRQRGIEPDVTS 289
Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
F+ V + E+ D +K MK+ GI P + +Y + C G ++A E+ M
Sbjct: 290 FSIVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMV 349
Query: 253 ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE 312
ESG+ P + K K + + +++ + + S T+ ++ F ++ E
Sbjct: 350 ESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKME 409
Query: 313 IGVLNWDVSKVRE 325
WD K E
Sbjct: 410 TVKEIWDDLKASE 422
Score = 32.7 bits (73), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN 240
M+ + P+ AT+ + ++D A +L ++MK+ P ++Y L F LG
Sbjct: 348 MVESGISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGK 407
Query: 241 TDKAYEV--DAHMGESG 255
+ E+ D E+G
Sbjct: 408 METVKEIWDDLKASETG 424
>sp|Q9ZU29|PP139_ARATH Pentatricopeptide repeat-containing protein At2g01390
OS=Arabidopsis thaliana GN=At2g01390/At2g01380 PE=2 SV=2
Length = 577
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 22/151 (14%)
Query: 114 CSKRGDVFEALRLYDDARSNG---ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
S GDV A+RL+++ R NG +S Y +L+ +G E +
Sbjct: 167 VSSSGDVDGAMRLWEEMRDNGCEPTVVSYTAYMKMLFA-----------DGRVEEAT--- 212
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
E++++M+ +V PN T+T + VA E A D+ +M+ G+ P +
Sbjct: 213 -----EVYKEMLRSRVSPNCHTYTVLMEYLVATGKCEEALDIFFKMQEIGVQPDKAACNI 267
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+ K G T V +M E+GVV P
Sbjct: 268 LIAKALKFGETSFMTRVLVYMKENGVVLRYP 298
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+ ++F +M D+ P T+T + + E A +LVK+M+ GI P + +Y
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ C +KA E+ M E G++P +AL+ ++ +++ + +
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMES-- 421
Query: 291 RQVSESTF---KIIEDWFDSVDAAEIGVLN 317
R++S +T ++I+ + S +GVLN
Sbjct: 422 RKLSPNTRTYNELIKGYCKSNVHKAMGVLN 451
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESS--------ENGDRENDS------ 167
EAL L + GI + H Y VL+ +C E + E G N
Sbjct: 341 EALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALI 400
Query: 168 NLGLKRGF-----EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222
N KRG ++ + M + K+ PN T+ + + K + A ++ +M +
Sbjct: 401 NGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIK-GYCKSNVHKAMGVLNKMLERKVL 459
Query: 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282
P + +Y + G C+ GN D AY + + M + G+VP++ ++++ +K+V++ ++
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519
Query: 283 LHRL 286
L
Sbjct: 520 FDSL 523
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+ FQQM++ P+ T+T+ + + A D++ +M+ G+ P L +Y +
Sbjct: 621 AYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIK 680
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274
G+ LG T+ A++V M ++G P + +L+K ++ K
Sbjct: 681 GYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMK 721
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
LK + ++M+ + P +T T + + D + A+ +QM S G P +Y
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLV 290
+ +C+ G A ++ A M E+GV P+ S+L+K D + + +++L R+R
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702
Query: 291 RQVSESTF 298
+ S+ TF
Sbjct: 703 CEPSQHTF 710
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 19/129 (14%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVAR----LAVAKE---DPE-------MAFD----LVKQ 215
F++ ++M +P++ TF S+ + + K+ +PE M FD L+++
Sbjct: 691 AFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEK 750
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES-GVVPEEPELSALLKLSVDAK 274
M + P +SY + G C++GN A +V HM + G+ P E +ALL K
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLK 810
Query: 275 KVDKVYEIL 283
K ++ +++
Sbjct: 811 KHNEAAKVV 819
Score = 38.9 bits (89), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 49/94 (52%), Gaps = 4/94 (4%)
Query: 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252
S+AR + E ++ ++++ + P + +Y + G+CKLGN ++A + + +
Sbjct: 190 LNSLARFGLVDEMKQVYMEMLED----KVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245
Query: 253 ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
E+G+ P+ ++L+ K +D +++ + +
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEM 279
Score = 38.9 bits (89), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247
P++ T+TS+ + E A DL ++ G+ P + Y + G+CK G D+A+ +
Sbjct: 495 PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLM 554
Query: 248 DAHMGESGVVPEEPELSALLK-LSVDAK 274
M +P +AL+ L D K
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCADGK 582
Score = 38.5 bits (88), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVAR-LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229
L F++F +M NE +T + L VA+ E A DL +MK P +R+Y
Sbjct: 269 LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE-AMDLFVKMKDDECFPTVRTYT 327
Query: 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
+ C +A + M E+G+ P + L+ K +K E+L ++
Sbjct: 328 VLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQM 384
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%)
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ + +M+ KV P+ T+ S+ + + A+ L+ M G+ P +Y +
Sbjct: 445 KAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMI 504
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
CK ++A ++ + + GV P +AL+ A KVD+ + +L ++
Sbjct: 505 DSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 21/177 (11%)
Query: 111 LDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLG 170
+D S++G + EA R+ + NG + S YN L+ C G E+ G
Sbjct: 387 VDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALIN-GHCVTGKMEDAIAVLEDMKEKG 445
Query: 171 LK--------------------RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210
L + ++M+ + P+ T++S+ + + + A
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505
Query: 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267
DL ++M G+PP +Y + +C G+ +KA ++ M E GV+P+ S L+
Sbjct: 506 DLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLI 562
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 67/156 (42%), Gaps = 17/156 (10%)
Query: 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172
MC K G++ A+ D R G+ ++ Y L+ S+ G +
Sbjct: 355 MC-KAGNMNRAMEFLDQMRVRGLCPNERTYTTLV--------DGFSQKG--------YMN 397
Query: 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232
+ + ++M + P+ T+ ++ E A +++ MK G+ P + SY L
Sbjct: 398 EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVL 457
Query: 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
GFC+ + D+A V M E G+ P+ S+L++
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Score = 41.6 bits (96), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%)
Query: 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239
+M+ + P+ T+TS+ + A + + QM+ G+ P R+Y + GF + G
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287
++AY V M ++G P +AL+ K++ +L ++
Sbjct: 395 YMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK 442
Score = 35.8 bits (81), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
+F +M T PN T+ ++ + F L++ M G+ P L SY +
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
G C+ G + V M G +E + L+K
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIK 318
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 202 AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261
+K + A ++ K+M + P + +Y + GFC GN D A + M G +P
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241
Query: 262 ELSALLKLSVDAKKVDKVYEILHRL 286
+ L+ +K+D +++L +
Sbjct: 242 TYNTLIDGYCKLRKIDDGFKLLRSM 266
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/98 (20%), Positives = 43/98 (43%)
Query: 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248
+E T+ ++ + + + A + +M G+ P + +Y + CK GN ++A E
Sbjct: 309 DEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFL 368
Query: 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286
M G+ P E + L+ +++ Y +L +
Sbjct: 369 DQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 172 KRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231
K +++++M+ + P+E T+T++ + D E A L +M G+ P + +Y
Sbjct: 502 KEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVL 561
Query: 232 LFGFCKLGNTDKA 244
+ G K T +A
Sbjct: 562 INGLNKQSRTREA 574
>sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610
OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1
Length = 559
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLG---- 170
+RG++ E + S+G+ L+ YN LL+ +CS + E E + ++
Sbjct: 291 RRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYCPTVI 350
Query: 171 --------------LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKED-PEMAFDLVKQ 215
L R + F QM+ K P+ T+ +V A++KE + A +L+
Sbjct: 351 TYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLG-AMSKEGMVDDAIELLGL 409
Query: 216 MKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275
+K+ PP L +Y + G K G KA E+ M ++G+ P++ +L+ A
Sbjct: 410 LKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRANL 469
Query: 276 VDKVYEILHRLRTLVRQVSESTFKII 301
V++ ++L + ST++++
Sbjct: 470 VEEAGQVLKETSNRGNGIRGSTYRLV 495
Score = 38.1 bits (87), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/172 (19%), Positives = 66/172 (38%), Gaps = 20/172 (11%)
Query: 118 GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177
G+ +A+R + D NG Y VL+ + CGS R E+
Sbjct: 223 GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGS----------------ARAIEV 266
Query: 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237
+ M + P+ T+ S+ + + E +++ + S G+ +Y L C
Sbjct: 267 LEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCS 326
Query: 238 LGNTDKAYEVDAHMGESGVVPEEPE----LSALLKLSVDAKKVDKVYEILHR 285
D+ E+ M ++ P ++ L K + ++ +D Y++L +
Sbjct: 327 HEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQ 378
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 45/98 (45%)
Query: 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230
+K+ E++ QM+ + P++ T S+ E A ++K+ + G + +Y
Sbjct: 435 MKKALELYHQMLDAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRL 494
Query: 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268
+ G CK + A EV M G P+E +A++K
Sbjct: 495 VIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYTAIVK 532
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181
EAL ++++ G+ + YN+LL + E ++ +F+ M
Sbjct: 332 EALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT----------------VFKSM 375
Query: 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT 241
D++ P+ ++T++ V D E A K++K G P + +YG + G+ K +
Sbjct: 376 RRDRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDV 435
Query: 242 DKAYEVDAHMGESGVVPEEPELSALLKLS 270
+K EV M SG+ + L+ ++ S
Sbjct: 436 EKMMEVYEKMRLSGIKANQTILTTIMDAS 464
Score = 39.3 bits (90), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 177 IFQQMITDKVDPNEATFTSVARLAVAKE---DPEMAFDLVKQMKSFGIPPKLRSYGPALF 233
IF++M + +P+ T+ + + V + + E F+ + K + P + Y ++
Sbjct: 196 IFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIY 255
Query: 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHR 285
+ K GN +KA +V + M GV ++L+ K+V K+Y+ + R
Sbjct: 256 MYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYKEVSKIYDQMQR 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,587,421
Number of Sequences: 539616
Number of extensions: 10025905
Number of successful extensions: 26041
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 24487
Number of HSP's gapped (non-prelim): 1254
length of query: 593
length of database: 191,569,459
effective HSP length: 123
effective length of query: 470
effective length of database: 125,196,691
effective search space: 58842444770
effective search space used: 58842444770
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)