Query 007684
Match_columns 593
No_of_seqs 426 out of 2413
Neff 9.3
Searched_HMMs 46136
Date Thu Mar 28 13:56:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.5E-45 1.2E-49 413.9 25.1 356 29-421 432-800 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.1E-43 4.7E-48 400.9 25.4 386 15-448 390-788 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.2E-42 4.7E-47 397.7 21.9 378 31-441 184-616 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.8E-41 3.9E-46 381.3 17.7 396 11-443 103-557 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 5.9E-40 1.3E-44 377.6 19.7 351 27-423 145-502 (857)
6 PLN03081 pentatricopeptide (PP 100.0 2E-39 4.3E-44 364.8 21.8 361 32-441 85-453 (697)
7 PF11977 RNase_Zc3h12a: Zc3h12 99.8 3.2E-21 6.9E-26 173.3 4.8 131 409-545 4-144 (155)
8 PRK11788 tetratricopeptide rep 99.6 9.6E-13 2.1E-17 138.4 25.0 229 48-305 54-292 (389)
9 PRK11788 tetratricopeptide rep 99.5 9E-12 2E-16 131.0 25.6 264 70-405 42-312 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.4 9.6E-12 2.1E-16 144.5 23.4 210 67-288 537-764 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.4 1.3E-11 2.9E-16 143.3 24.0 327 67-422 469-817 (899)
12 KOG4422 Uncharacterized conser 99.3 8.1E-10 1.8E-14 109.2 24.2 375 35-439 117-589 (625)
13 PF13041 PPR_2: PPR repeat fam 99.3 5.1E-12 1.1E-16 90.4 5.6 49 223-271 1-49 (50)
14 PF13041 PPR_2: PPR repeat fam 99.3 8.1E-12 1.8E-16 89.4 6.0 50 188-237 1-50 (50)
15 PRK15174 Vi polysaccharide exp 99.2 3E-09 6.5E-14 118.7 24.7 298 67-407 46-350 (656)
16 PRK15174 Vi polysaccharide exp 99.1 1.1E-08 2.4E-13 114.2 24.1 295 67-407 80-384 (656)
17 KOG4422 Uncharacterized conser 99.1 2.7E-09 5.8E-14 105.6 14.3 215 1-221 213-464 (625)
18 KOG4626 O-linked N-acetylgluco 99.0 9.4E-09 2E-13 106.1 16.4 216 166-439 297-522 (966)
19 KOG4318 Bicoid mRNA stability 98.9 3.4E-08 7.4E-13 105.9 16.6 99 208-309 187-285 (1088)
20 TIGR00990 3a0801s09 mitochondr 98.9 1.6E-07 3.4E-12 104.9 20.3 234 106-405 333-572 (615)
21 PF13429 TPR_15: Tetratricopep 98.8 7.2E-09 1.6E-13 103.7 8.3 257 67-403 12-276 (280)
22 KOG4626 O-linked N-acetylgluco 98.8 3.1E-08 6.8E-13 102.3 11.5 307 104-440 116-482 (966)
23 TIGR02521 type_IV_pilW type IV 98.8 6.5E-07 1.4E-11 85.9 20.0 188 105-312 32-220 (234)
24 PRK11447 cellulose synthase su 98.8 1.3E-06 2.8E-11 104.4 25.1 203 68-288 274-523 (1157)
25 TIGR02521 type_IV_pilW type IV 98.7 4.7E-06 1E-10 79.9 23.7 167 102-288 63-231 (234)
26 PF12854 PPR_1: PPR repeat 98.7 2.2E-08 4.7E-13 64.7 3.4 32 220-251 2-33 (34)
27 PRK11447 cellulose synthase su 98.7 1.6E-06 3.5E-11 103.5 21.7 203 70-284 358-597 (1157)
28 PF12854 PPR_1: PPR repeat 98.6 3.7E-08 7.9E-13 63.6 4.0 34 184-217 1-34 (34)
29 KOG4318 Bicoid mRNA stability 98.6 6.4E-07 1.4E-11 96.4 15.6 226 28-275 19-286 (1088)
30 TIGR00990 3a0801s09 mitochondr 98.6 2.6E-06 5.7E-11 95.1 20.9 241 50-319 315-566 (615)
31 PF13429 TPR_15: Tetratricopep 98.6 5.1E-07 1.1E-11 90.3 13.7 186 74-286 88-274 (280)
32 PRK10049 pgaA outer membrane p 98.6 3.6E-06 7.9E-11 96.1 21.0 339 67-441 53-457 (765)
33 PRK09782 bacteriophage N4 rece 98.5 1.5E-05 3.3E-10 91.9 24.6 169 103-298 476-645 (987)
34 PRK10747 putative protoheme IX 98.5 5.4E-06 1.2E-10 87.2 18.5 252 76-408 97-361 (398)
35 PRK10049 pgaA outer membrane p 98.5 1.8E-05 4E-10 90.4 22.9 312 67-405 87-457 (765)
36 COG2956 Predicted N-acetylgluc 98.4 1.6E-05 3.5E-10 76.9 17.7 221 48-296 54-285 (389)
37 PRK09782 bacteriophage N4 rece 98.4 1.4E-05 2.9E-10 92.3 20.3 195 62-288 507-705 (987)
38 PRK12370 invasion protein regu 98.4 4.1E-05 8.8E-10 84.2 23.2 180 80-288 278-469 (553)
39 PRK14574 hmsH outer membrane p 98.4 1.7E-05 3.7E-10 89.7 20.0 337 70-442 109-515 (822)
40 TIGR00540 hemY_coli hemY prote 98.4 2.2E-05 4.8E-10 83.0 19.3 189 74-289 95-292 (409)
41 PRK10747 putative protoheme IX 98.4 4.7E-05 1E-09 80.1 21.0 233 48-314 137-380 (398)
42 KOG1840 Kinesin light chain [C 98.4 2.7E-05 5.9E-10 82.5 18.8 205 67-288 203-437 (508)
43 PRK12370 invasion protein regu 98.3 3.6E-05 7.8E-10 84.6 19.6 180 78-288 319-501 (553)
44 KOG1840 Kinesin light chain [C 98.3 2.1E-05 4.5E-10 83.4 16.7 205 67-288 245-478 (508)
45 TIGR00540 hemY_coli hemY prote 98.3 9.2E-05 2E-09 78.3 21.8 226 69-319 159-394 (409)
46 COG2956 Predicted N-acetylgluc 98.3 2.5E-05 5.5E-10 75.6 14.8 226 60-312 35-266 (389)
47 PRK14574 hmsH outer membrane p 98.3 7.4E-05 1.6E-09 84.6 21.0 291 72-404 43-396 (822)
48 PRK11189 lipoprotein NlpI; Pro 98.2 0.00082 1.8E-08 67.7 24.4 226 118-409 40-269 (296)
49 KOG1129 TPR repeat-containing 98.2 0.0002 4.3E-09 69.5 18.4 229 107-405 226-459 (478)
50 TIGR00756 PPR pentatricopeptid 98.1 5.1E-06 1.1E-10 53.9 4.6 33 227-259 2-34 (35)
51 KOG1155 Anaphase-promoting com 98.1 0.0012 2.7E-08 67.1 22.3 209 53-288 251-494 (559)
52 KOG1126 DNA-binding cell divis 98.1 4.4E-05 9.5E-10 80.6 12.5 225 102-403 351-585 (638)
53 PF13812 PPR_3: Pentatricopept 98.0 9.6E-06 2.1E-10 52.3 4.3 32 192-223 3-34 (34)
54 PF08579 RPM2: Mitochondrial r 98.0 7.1E-05 1.5E-09 61.5 10.0 88 107-202 28-116 (120)
55 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.3E-10 52.3 4.5 35 191-225 1-35 (35)
56 TIGR03302 OM_YfiO outer membra 98.0 0.0014 3.1E-08 63.5 21.4 169 101-289 30-232 (235)
57 KOG1126 DNA-binding cell divis 98.0 0.0002 4.4E-09 75.7 15.8 257 67-407 357-623 (638)
58 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 51.8 4.4 34 225-258 1-34 (34)
59 PRK11189 lipoprotein NlpI; Pro 97.9 0.0017 3.6E-08 65.5 20.0 191 67-289 68-265 (296)
60 COG3063 PilF Tfp pilus assembl 97.8 0.004 8.6E-08 58.1 19.8 178 107-305 38-217 (250)
61 COG3071 HemY Uncharacterized e 97.8 0.0023 5.1E-08 64.0 19.2 194 76-294 97-297 (400)
62 PF12569 NARP1: NMDA receptor- 97.8 0.007 1.5E-07 65.1 24.4 111 192-305 196-307 (517)
63 KOG1129 TPR repeat-containing 97.8 0.0002 4.4E-09 69.4 11.2 194 67-288 227-423 (478)
64 COG3071 HemY Uncharacterized e 97.8 0.0057 1.2E-07 61.4 21.5 247 32-310 114-376 (400)
65 KOG1155 Anaphase-promoting com 97.8 0.0035 7.6E-08 63.9 20.1 211 67-288 231-460 (559)
66 KOG2002 TPR-containing nuclear 97.8 0.0009 1.9E-08 73.8 16.7 210 69-289 502-745 (1018)
67 PF08579 RPM2: Mitochondrial r 97.8 0.00037 8.1E-09 57.3 10.5 81 192-272 27-116 (120)
68 PF01535 PPR: PPR repeat; Int 97.7 3.7E-05 8E-10 48.3 3.6 29 227-255 2-30 (31)
69 KOG0547 Translocase of outer m 97.7 0.0036 7.9E-08 64.2 19.2 218 114-403 336-565 (606)
70 PF01535 PPR: PPR repeat; Int 97.6 5E-05 1.1E-09 47.7 3.1 31 191-221 1-31 (31)
71 PF04733 Coatomer_E: Coatomer 97.6 0.00092 2E-08 66.7 13.2 150 112-288 110-264 (290)
72 KOG2002 TPR-containing nuclear 97.6 0.0047 1E-07 68.4 19.2 325 67-417 311-689 (1018)
73 cd05804 StaR_like StaR_like; a 97.6 0.0068 1.5E-07 62.7 19.7 199 67-288 10-214 (355)
74 PF04733 Coatomer_E: Coatomer 97.5 0.0022 4.7E-08 64.1 14.3 185 67-288 39-229 (290)
75 COG3063 PilF Tfp pilus assembl 97.5 0.017 3.7E-07 53.9 18.9 193 67-288 39-235 (250)
76 PF10037 MRP-S27: Mitochondria 97.5 0.0016 3.4E-08 67.7 13.6 122 135-272 62-185 (429)
77 PF12569 NARP1: NMDA receptor- 97.5 0.0084 1.8E-07 64.5 19.5 196 69-288 10-222 (517)
78 KOG1128 Uncharacterized conser 97.5 0.00068 1.5E-08 72.5 10.6 217 67-304 402-632 (777)
79 KOG2003 TPR repeat-containing 97.4 0.0057 1.2E-07 61.9 15.2 135 170-309 573-708 (840)
80 PRK15359 type III secretion sy 97.4 0.0082 1.8E-07 53.3 15.0 83 169-253 38-120 (144)
81 PF06239 ECSIT: Evolutionarily 97.4 0.0014 2.9E-08 60.8 9.9 103 124-239 34-152 (228)
82 PRK10370 formate-dependent nit 97.4 0.011 2.4E-07 55.6 16.4 128 169-301 53-184 (198)
83 TIGR02552 LcrH_SycD type III s 97.3 0.0076 1.6E-07 52.6 14.3 118 177-299 5-122 (135)
84 PF10037 MRP-S27: Mitochondria 97.3 0.0038 8.2E-08 65.0 13.9 132 177-308 50-186 (429)
85 PF06239 ECSIT: Evolutionarily 97.3 0.0023 5E-08 59.3 10.4 88 187-274 44-152 (228)
86 KOG3785 Uncharacterized conser 97.2 0.0047 1E-07 60.8 12.3 254 110-405 291-553 (557)
87 PRK15359 type III secretion sy 97.2 0.01 2.2E-07 52.7 13.6 116 175-298 13-128 (144)
88 COG5010 TadD Flp pilus assembl 97.2 0.019 4.2E-07 54.6 15.8 159 108-287 70-229 (257)
89 KOG2003 TPR repeat-containing 97.2 0.023 4.9E-07 57.7 17.1 148 107-275 561-709 (840)
90 KOG1125 TPR repeat-containing 97.2 0.03 6.5E-07 58.9 18.0 64 371-439 460-523 (579)
91 PF09295 ChAPs: ChAPs (Chs5p-A 97.1 0.0098 2.1E-07 61.6 14.3 111 169-287 183-295 (395)
92 PRK15179 Vi polysaccharide bio 97.1 0.023 4.9E-07 63.6 18.1 162 98-287 80-243 (694)
93 KOG1070 rRNA processing protei 97.1 0.022 4.7E-07 65.5 17.3 205 67-295 1462-1669(1710)
94 PF09976 TPR_21: Tetratricopep 97.1 0.018 3.9E-07 51.2 14.0 115 169-286 25-144 (145)
95 COG4783 Putative Zn-dependent 97.0 0.033 7.1E-07 57.6 16.8 134 116-288 318-453 (484)
96 KOG0547 Translocase of outer m 97.0 0.011 2.4E-07 60.8 13.3 117 168-288 441-565 (606)
97 PRK10370 formate-dependent nit 97.0 0.032 7E-07 52.4 15.9 127 116-263 51-181 (198)
98 PRK15179 Vi polysaccharide bio 97.0 0.052 1.1E-06 60.8 19.7 116 169-288 100-216 (694)
99 COG5010 TadD Flp pilus assembl 97.0 0.097 2.1E-06 50.0 18.4 143 169-316 80-223 (257)
100 cd05804 StaR_like StaR_like; a 97.0 0.016 3.4E-07 60.0 14.8 158 70-253 50-214 (355)
101 TIGR03302 OM_YfiO outer membra 97.0 0.018 3.8E-07 55.8 14.3 171 67-253 37-231 (235)
102 TIGR02552 LcrH_SycD type III s 97.0 0.026 5.5E-07 49.2 13.9 94 169-266 31-124 (135)
103 PF09976 TPR_21: Tetratricopep 97.0 0.03 6.6E-07 49.7 14.5 127 104-251 12-144 (145)
104 KOG3081 Vesicle coat complex C 97.0 0.25 5.4E-06 47.4 20.5 189 67-292 45-239 (299)
105 KOG2076 RNA polymerase III tra 96.9 0.064 1.4E-06 59.3 18.8 228 54-305 196-459 (895)
106 PRK14720 transcript cleavage f 96.9 0.16 3.6E-06 57.7 22.6 163 105-288 32-197 (906)
107 PF09295 ChAPs: ChAPs (Chs5p-A 96.9 0.027 5.9E-07 58.4 15.2 120 191-317 170-290 (395)
108 KOG2076 RNA polymerase III tra 96.9 0.065 1.4E-06 59.3 18.4 194 77-296 153-352 (895)
109 KOG1173 Anaphase-promoting com 96.8 0.057 1.2E-06 56.7 16.6 134 168-305 393-532 (611)
110 KOG3081 Vesicle coat complex C 96.8 0.02 4.4E-07 54.5 12.0 155 107-288 111-270 (299)
111 cd00189 TPR Tetratricopeptide 96.7 0.024 5.2E-07 44.6 10.4 93 193-288 3-96 (100)
112 PF05843 Suf: Suppressor of fo 96.7 0.023 5E-07 56.6 12.2 116 170-288 16-135 (280)
113 PLN02789 farnesyltranstransfer 96.5 0.34 7.3E-06 49.1 19.5 215 67-307 41-267 (320)
114 KOG2376 Signal recognition par 96.5 0.12 2.5E-06 54.8 16.1 178 71-288 20-203 (652)
115 cd00189 TPR Tetratricopeptide 96.5 0.042 9E-07 43.2 10.7 83 169-253 14-96 (100)
116 KOG4340 Uncharacterized conser 96.5 0.061 1.3E-06 52.1 12.8 161 67-257 48-210 (459)
117 KOG0495 HAT repeat protein [RN 96.3 0.29 6.3E-06 52.5 18.0 31 377-407 819-849 (913)
118 PF05843 Suf: Suppressor of fo 96.3 0.096 2.1E-06 52.2 14.3 119 191-312 2-124 (280)
119 PF13170 DUF4003: Protein of u 96.3 0.35 7.5E-06 48.4 17.7 139 120-270 78-227 (297)
120 COG4783 Putative Zn-dependent 96.2 0.15 3.3E-06 52.8 15.1 155 72-270 315-472 (484)
121 KOG0985 Vesicle coat protein c 96.2 0.16 3.5E-06 56.9 15.8 104 168-286 1117-1220(1666)
122 TIGR02795 tol_pal_ybgF tol-pal 96.2 0.11 2.4E-06 43.7 12.2 97 191-289 3-105 (119)
123 PLN03088 SGT1, suppressor of 96.2 0.056 1.2E-06 55.9 12.2 96 169-269 16-112 (356)
124 PRK02603 photosystem I assembl 96.2 0.16 3.5E-06 46.5 14.0 114 190-309 35-165 (172)
125 KOG1914 mRNA cleavage and poly 96.2 0.14 3.1E-06 53.6 14.4 133 101-252 363-499 (656)
126 PF12921 ATP13: Mitochondrial 96.1 0.055 1.2E-06 46.6 9.9 98 189-306 1-99 (126)
127 KOG1915 Cell cycle control pro 96.1 0.61 1.3E-05 48.3 18.1 164 104-289 107-273 (677)
128 KOG0495 HAT repeat protein [RN 96.0 2 4.3E-05 46.5 22.3 262 106-406 518-784 (913)
129 PF12895 Apc3: Anaphase-promot 96.0 0.0095 2.1E-07 47.3 4.3 80 169-250 3-83 (84)
130 PRK10153 DNA-binding transcrip 96.0 0.41 9E-06 51.9 17.9 155 133-303 331-494 (517)
131 KOG4340 Uncharacterized conser 95.9 1.1 2.4E-05 43.7 18.3 165 103-286 143-336 (459)
132 PRK04841 transcriptional regul 95.9 0.44 9.6E-06 56.0 19.6 204 67-288 495-719 (903)
133 PRK14720 transcript cleavage f 95.9 0.28 6.2E-06 55.9 16.8 219 58-305 24-267 (906)
134 KOG1173 Anaphase-promoting com 95.9 0.12 2.7E-06 54.3 12.5 100 169-271 428-533 (611)
135 PLN02789 farnesyltranstransfer 95.8 0.68 1.5E-05 47.0 17.9 185 61-273 67-268 (320)
136 KOG3060 Uncharacterized conser 95.8 0.76 1.6E-05 43.9 16.2 161 107-288 55-219 (289)
137 TIGR02795 tol_pal_ybgF tol-pal 95.7 0.34 7.4E-06 40.6 13.3 49 170-218 54-104 (119)
138 KOG1128 Uncharacterized conser 95.7 0.14 3.1E-06 55.4 12.6 161 101-290 394-583 (777)
139 CHL00033 ycf3 photosystem I as 95.7 0.23 5E-06 45.2 12.7 115 171-286 15-139 (168)
140 PF12921 ATP13: Mitochondrial 95.7 0.14 3.1E-06 44.1 10.3 53 219-271 46-99 (126)
141 PLN03088 SGT1, suppressor of 95.5 0.34 7.3E-06 50.2 14.5 101 110-231 8-109 (356)
142 PRK02603 photosystem I assembl 95.4 0.64 1.4E-05 42.5 14.8 85 107-208 38-124 (172)
143 PRK10153 DNA-binding transcrip 95.4 0.63 1.4E-05 50.5 16.6 151 99-263 332-489 (517)
144 KOG1174 Anaphase-promoting com 95.4 0.99 2.2E-05 46.0 16.4 75 54-133 184-261 (564)
145 KOG0553 TPR repeat-containing 95.4 0.16 3.5E-06 49.5 10.6 94 169-267 95-189 (304)
146 PF12895 Apc3: Anaphase-promot 95.4 0.026 5.7E-07 44.7 4.6 80 203-285 2-83 (84)
147 KOG3616 Selective LIM binding 95.3 0.59 1.3E-05 50.7 15.3 79 197-286 739-817 (1636)
148 PF03704 BTAD: Bacterial trans 95.3 0.62 1.4E-05 41.1 13.8 73 228-301 65-142 (146)
149 KOG3941 Intermediate in Toll s 95.3 0.15 3.3E-06 49.1 9.9 89 187-275 64-173 (406)
150 PF14559 TPR_19: Tetratricopep 95.3 0.041 8.8E-07 41.5 5.2 50 168-218 4-53 (68)
151 CHL00033 ycf3 photosystem I as 95.2 0.61 1.3E-05 42.4 13.9 94 105-215 36-138 (168)
152 KOG1070 rRNA processing protei 95.2 1.4 3.1E-05 51.4 19.0 170 98-287 1524-1698(1710)
153 KOG1125 TPR repeat-containing 95.2 0.68 1.5E-05 49.1 15.3 143 120-281 410-563 (579)
154 KOG1174 Anaphase-promoting com 95.2 3.2 7E-05 42.4 19.2 82 117-216 209-292 (564)
155 PRK15363 pathogenicity island 95.1 0.37 8E-06 42.9 11.3 83 169-253 49-131 (157)
156 KOG3616 Selective LIM binding 95.1 0.16 3.4E-06 54.9 10.3 140 67-251 769-908 (1636)
157 PRK15363 pathogenicity island 95.0 0.78 1.7E-05 40.8 13.0 95 191-288 36-131 (157)
158 smart00299 CLH Clathrin heavy 95.0 1.2 2.7E-05 38.9 14.7 127 107-272 10-137 (140)
159 KOG0624 dsRNA-activated protei 94.9 4.5 9.8E-05 40.4 20.4 381 68-512 43-458 (504)
160 PF12688 TPR_5: Tetratrico pep 94.9 0.82 1.8E-05 39.0 12.6 49 169-217 15-65 (120)
161 PF14559 TPR_19: Tetratricopep 94.9 0.072 1.6E-06 40.1 5.7 50 202-253 3-53 (68)
162 PF14938 SNAP: Soluble NSF att 94.8 0.24 5.1E-06 49.5 10.5 212 67-302 39-275 (282)
163 KOG2376 Signal recognition par 94.7 1.5 3.3E-05 46.7 16.2 113 167-291 24-141 (652)
164 PF03704 BTAD: Bacterial trans 94.6 0.16 3.5E-06 45.0 8.0 72 191-263 63-139 (146)
165 COG5107 RNA14 Pre-mRNA 3'-end 94.5 0.76 1.6E-05 47.3 12.9 131 170-306 412-546 (660)
166 KOG3941 Intermediate in Toll s 94.5 0.21 4.5E-06 48.2 8.5 87 223-309 65-172 (406)
167 PF14938 SNAP: Soluble NSF att 94.5 1.9 4E-05 43.0 16.1 181 107-306 38-246 (282)
168 KOG3060 Uncharacterized conser 94.4 2 4.3E-05 41.1 14.8 188 53-271 40-233 (289)
169 KOG2053 Mitochondrial inherita 94.4 2.4 5.2E-05 47.4 17.5 134 114-272 19-156 (932)
170 PF13170 DUF4003: Protein of u 94.3 0.58 1.3E-05 46.8 11.9 130 170-301 77-223 (297)
171 KOG2047 mRNA splicing factor [ 94.2 10 0.00022 41.2 24.0 177 107-288 251-453 (835)
172 PF12688 TPR_5: Tetratrico pep 94.0 2.1 4.5E-05 36.5 13.1 91 196-288 7-103 (120)
173 PF13432 TPR_16: Tetratricopep 94.0 0.13 2.9E-06 38.2 5.2 49 169-218 11-59 (65)
174 KOG3617 WD40 and TPR repeat-co 93.8 0.45 9.8E-06 52.3 10.5 156 103-286 725-884 (1416)
175 KOG2796 Uncharacterized conser 93.8 0.48 1E-05 45.3 9.5 180 35-235 137-329 (366)
176 PF13432 TPR_16: Tetratricopep 93.7 0.33 7.2E-06 36.0 7.0 55 232-288 4-59 (65)
177 PRK04841 transcriptional regul 93.6 2.4 5.3E-05 49.8 17.6 207 67-290 535-761 (903)
178 KOG3785 Uncharacterized conser 93.5 1.2 2.6E-05 44.5 11.9 195 68-298 290-497 (557)
179 KOG1914 mRNA cleavage and poly 93.4 5.2 0.00011 42.4 16.8 115 170-288 381-500 (656)
180 PF13424 TPR_12: Tetratricopep 93.3 0.16 3.6E-06 39.3 4.9 61 191-251 6-72 (78)
181 KOG1915 Cell cycle control pro 93.3 12 0.00026 39.2 22.0 121 69-216 113-233 (677)
182 PF13281 DUF4071: Domain of un 93.2 11 0.00024 38.9 18.9 168 107-289 144-334 (374)
183 PLN03098 LPA1 LOW PSII ACCUMUL 93.2 0.84 1.8E-05 47.6 10.9 66 187-254 72-141 (453)
184 KOG2047 mRNA splicing factor [ 93.1 2.5 5.3E-05 45.7 14.2 160 107-284 550-718 (835)
185 PF13414 TPR_11: TPR repeat; P 92.9 0.4 8.7E-06 36.0 6.4 61 190-252 3-65 (69)
186 PF13281 DUF4071: Domain of un 92.8 9.1 0.0002 39.4 17.6 177 192-405 143-335 (374)
187 KOG1156 N-terminal acetyltrans 92.7 6.4 0.00014 42.6 16.7 184 76-286 20-211 (700)
188 KOG0985 Vesicle coat protein c 92.7 12 0.00025 42.9 19.1 159 101-305 1101-1259(1666)
189 PRK10803 tol-pal system protei 92.6 2.4 5.3E-05 41.6 13.0 97 190-288 143-245 (263)
190 KOG0553 TPR repeat-containing 92.3 1.6 3.4E-05 42.8 10.8 101 199-305 90-192 (304)
191 KOG2053 Mitochondrial inherita 92.1 21 0.00046 40.4 20.2 190 72-291 52-257 (932)
192 KOG4162 Predicted calmodulin-b 92.1 4.6 0.0001 44.5 15.1 207 58-288 317-541 (799)
193 KOG4162 Predicted calmodulin-b 92.1 16 0.00036 40.5 19.1 265 115-415 238-518 (799)
194 PF13371 TPR_9: Tetratricopept 92.1 1 2.2E-05 34.1 7.8 53 199-253 4-57 (73)
195 PF13424 TPR_12: Tetratricopep 91.9 0.34 7.4E-06 37.5 5.0 64 225-288 5-74 (78)
196 PF13414 TPR_11: TPR repeat; P 91.5 0.89 1.9E-05 34.1 6.8 62 225-288 3-66 (69)
197 PF13371 TPR_9: Tetratricopept 91.2 1.5 3.3E-05 33.2 7.9 66 232-301 2-68 (73)
198 KOG0548 Molecular co-chaperone 91.1 5.4 0.00012 42.2 13.9 123 163-288 306-454 (539)
199 KOG0548 Molecular co-chaperone 90.6 12 0.00025 39.8 15.7 220 107-405 227-456 (539)
200 COG5107 RNA14 Pre-mRNA 3'-end 90.5 7.4 0.00016 40.4 13.8 117 189-309 396-516 (660)
201 PRK10866 outer membrane biogen 90.4 18 0.00039 35.1 20.0 164 104-287 33-239 (243)
202 KOG1156 N-terminal acetyltrans 90.4 17 0.00037 39.5 16.9 190 73-288 51-247 (700)
203 PF04840 Vps16_C: Vps16, C-ter 90.3 10 0.00023 38.4 15.1 98 169-286 191-288 (319)
204 PRK10803 tol-pal system protei 89.9 6.2 0.00013 38.8 12.7 95 106-218 145-245 (263)
205 PF09205 DUF1955: Domain of un 89.6 13 0.00028 32.1 12.5 119 169-291 16-151 (161)
206 KOG0624 dsRNA-activated protei 89.5 7.8 0.00017 38.8 12.7 128 72-218 115-251 (504)
207 KOG3617 WD40 and TPR repeat-co 89.4 5.4 0.00012 44.4 12.5 147 72-251 737-884 (1416)
208 COG4235 Cytochrome c biogenesi 89.4 12 0.00025 37.0 13.8 114 101-232 153-267 (287)
209 KOG3777 Uncharacterized conser 89.3 0.21 4.6E-06 51.7 2.0 102 407-515 12-123 (443)
210 KOG1538 Uncharacterized conser 89.2 3.6 7.7E-05 44.4 10.8 203 52-288 623-845 (1081)
211 PF04053 Coatomer_WDAD: Coatom 88.9 5.5 0.00012 42.4 12.3 161 70-286 268-428 (443)
212 PLN03098 LPA1 LOW PSII ACCUMUL 88.9 3.5 7.6E-05 43.1 10.4 63 225-289 75-141 (453)
213 PF07035 Mic1: Colon cancer-as 88.8 18 0.00038 32.8 13.8 134 124-288 14-148 (167)
214 PF04840 Vps16_C: Vps16, C-ter 88.5 13 0.00028 37.7 14.2 122 107-270 180-301 (319)
215 PF13929 mRNA_stabil: mRNA sta 88.0 24 0.00052 34.8 14.9 176 131-306 104-289 (292)
216 KOG1127 TPR repeat-containing 87.9 6.7 0.00015 44.7 12.3 176 106-286 494-697 (1238)
217 PRK11906 transcriptional regul 87.4 18 0.00039 38.1 14.5 158 118-285 272-432 (458)
218 KOG1538 Uncharacterized conser 87.0 15 0.00032 40.0 13.6 123 107-249 559-694 (1081)
219 COG3629 DnrI DNA-binding trans 86.8 5.8 0.00013 39.1 10.1 81 226-307 154-239 (280)
220 COG3898 Uncharacterized membra 84.9 39 0.00084 34.7 14.7 166 107-293 121-296 (531)
221 PRK10866 outer membrane biogen 84.7 39 0.00084 32.8 14.8 56 196-253 38-97 (243)
222 PF10300 DUF3808: Protein of u 84.5 30 0.00064 37.3 15.2 167 107-288 191-375 (468)
223 PF13762 MNE1: Mitochondrial s 84.3 3.2 7E-05 36.5 6.3 112 33-152 13-128 (145)
224 PF13176 TPR_7: Tetratricopept 84.2 2.2 4.8E-05 27.4 4.1 23 193-215 2-24 (36)
225 COG4235 Cytochrome c biogenesi 84.2 27 0.00059 34.4 13.2 115 171-290 138-257 (287)
226 PF04184 ST7: ST7 protein; In 84.0 63 0.0014 34.4 17.7 71 196-267 265-338 (539)
227 PF13929 mRNA_stabil: mRNA sta 83.9 36 0.00078 33.6 13.8 136 119-268 143-286 (292)
228 PF09205 DUF1955: Domain of un 83.3 29 0.00063 30.0 14.0 140 108-257 4-152 (161)
229 COG4700 Uncharacterized protei 83.3 37 0.00081 31.2 19.1 126 136-281 86-214 (251)
230 COG3629 DnrI DNA-binding trans 83.0 11 0.00024 37.1 10.2 79 190-269 153-236 (280)
231 PRK15331 chaperone protein Sic 82.9 29 0.00063 31.2 11.8 88 199-288 46-133 (165)
232 smart00299 CLH Clathrin heavy 82.7 31 0.00067 29.9 15.9 114 169-305 21-135 (140)
233 KOG4555 TPR repeat-containing 82.5 20 0.00043 30.9 9.9 90 199-291 52-146 (175)
234 KOG2297 Predicted translation 82.4 53 0.0011 32.6 14.1 65 205-279 270-340 (412)
235 KOG2796 Uncharacterized conser 81.2 56 0.0012 31.8 18.2 127 169-300 191-324 (366)
236 PF13176 TPR_7: Tetratricopept 81.2 2.9 6.3E-05 26.8 3.7 23 228-250 2-24 (36)
237 PF08631 SPO22: Meiosis protei 81.1 60 0.0013 32.1 20.8 170 114-296 3-193 (278)
238 KOG1127 TPR repeat-containing 80.7 54 0.0012 37.8 15.2 74 206-283 474-549 (1238)
239 PF10300 DUF3808: Protein of u 80.4 15 0.00032 39.6 11.0 128 107-252 232-374 (468)
240 PF09613 HrpB1_HrpK: Bacterial 79.4 47 0.001 29.8 12.1 86 169-259 24-111 (160)
241 KOG0543 FKBP-type peptidyl-pro 78.8 18 0.00039 37.2 10.2 122 164-288 217-354 (397)
242 TIGR02561 HrpB1_HrpK type III 78.4 47 0.001 29.3 11.5 75 169-248 24-99 (153)
243 PF10602 RPN7: 26S proteasome 78.4 19 0.00041 33.0 9.6 97 191-287 37-140 (177)
244 PF07079 DUF1347: Protein of u 78.2 51 0.0011 34.6 13.1 138 167-309 18-181 (549)
245 PF07035 Mic1: Colon cancer-as 77.0 57 0.0012 29.5 14.7 128 98-255 23-150 (167)
246 COG4105 ComL DNA uptake lipopr 76.5 42 0.00092 32.5 11.5 30 385-414 177-206 (254)
247 PF13374 TPR_10: Tetratricopep 76.4 6.2 0.00013 25.7 4.4 27 191-217 3-29 (42)
248 KOG4570 Uncharacterized conser 76.0 12 0.00025 37.2 7.6 104 98-219 58-164 (418)
249 KOG2280 Vacuolar assembly/sort 74.3 26 0.00057 38.9 10.4 96 169-283 698-793 (829)
250 PF09613 HrpB1_HrpK: Bacterial 74.2 66 0.0014 28.9 13.2 113 191-309 8-124 (160)
251 PF10602 RPN7: 26S proteasome 73.4 25 0.00055 32.2 9.0 70 226-295 37-108 (177)
252 PF13428 TPR_14: Tetratricopep 72.2 8 0.00017 26.0 4.1 27 192-218 3-29 (44)
253 COG3118 Thioredoxin domain-con 72.0 98 0.0021 30.7 12.8 137 169-309 148-286 (304)
254 KOG4555 TPR repeat-containing 71.7 66 0.0014 27.8 10.4 86 169-255 57-145 (175)
255 PF13762 MNE1: Mitochondrial s 71.4 72 0.0016 28.1 12.3 101 179-279 26-134 (145)
256 PRK15331 chaperone protein Sic 71.0 80 0.0017 28.5 16.3 83 169-253 51-133 (165)
257 KOG0543 FKBP-type peptidyl-pro 70.7 62 0.0014 33.4 11.6 128 107-253 211-354 (397)
258 PF02284 COX5A: Cytochrome c o 69.6 59 0.0013 26.7 9.0 60 243-303 28-87 (108)
259 PF00637 Clathrin: Region in C 69.6 1.2 2.5E-05 39.2 -0.7 53 162-214 14-66 (143)
260 PRK11906 transcriptional regul 69.0 1.6E+02 0.0035 31.2 14.7 137 170-309 273-422 (458)
261 KOG0550 Molecular chaperone (D 68.9 58 0.0012 33.8 10.8 165 72-252 178-348 (486)
262 KOG4570 Uncharacterized conser 68.6 26 0.00055 34.9 8.0 47 240-286 115-161 (418)
263 COG4649 Uncharacterized protei 67.3 1E+02 0.0022 28.2 15.1 136 103-259 58-201 (221)
264 cd00923 Cyt_c_Oxidase_Va Cytoc 67.2 30 0.00065 28.1 6.8 30 186-215 38-67 (103)
265 KOG1585 Protein required for f 66.6 34 0.00074 32.9 8.2 91 192-283 152-250 (308)
266 PF13431 TPR_17: Tetratricopep 66.0 8 0.00017 24.5 2.9 24 187-210 10-33 (34)
267 PF13374 TPR_10: Tetratricopep 65.8 11 0.00024 24.4 3.7 27 226-252 3-29 (42)
268 PF02284 COX5A: Cytochrome c o 65.7 32 0.00069 28.2 6.7 60 173-233 28-87 (108)
269 PF00515 TPR_1: Tetratricopept 65.7 15 0.00032 22.8 4.2 27 192-218 3-29 (34)
270 PHA02875 ankyrin repeat protei 65.5 17 0.00036 38.4 7.0 106 176-294 116-229 (413)
271 KOG1550 Extracellular protein 65.2 2.2E+02 0.0048 31.4 15.9 168 114-301 259-438 (552)
272 PF02259 FAT: FAT domain; Int 64.9 1.6E+02 0.0035 29.7 15.0 64 225-288 146-212 (352)
273 COG1729 Uncharacterized protei 64.6 1.5E+02 0.0032 29.1 12.4 102 191-297 143-250 (262)
274 PF11207 DUF2989: Protein of u 63.9 48 0.001 30.9 8.6 73 207-280 123-198 (203)
275 PF11207 DUF2989: Protein of u 63.7 62 0.0013 30.2 9.2 74 171-245 122-198 (203)
276 PF00637 Clathrin: Region in C 63.5 5.5 0.00012 34.8 2.4 87 195-288 12-98 (143)
277 PF13512 TPR_18: Tetratricopep 63.3 1.1E+02 0.0023 27.0 11.7 20 114-133 20-39 (142)
278 PF07163 Pex26: Pex26 protein; 63.2 62 0.0013 31.8 9.4 86 196-283 89-181 (309)
279 PF04184 ST7: ST7 protein; In 63.2 55 0.0012 34.9 9.7 72 168-240 272-346 (539)
280 PF13428 TPR_14: Tetratricopep 63.0 15 0.00032 24.7 4.0 28 106-133 3-30 (44)
281 cd00923 Cyt_c_Oxidase_Va Cytoc 62.7 61 0.0013 26.4 7.7 44 244-287 26-69 (103)
282 COG0457 NrfG FOG: TPR repeat [ 61.3 1.2E+02 0.0027 27.1 18.6 198 67-288 63-264 (291)
283 KOG2114 Vacuolar assembly/sort 60.9 1.1E+02 0.0024 34.7 12.0 175 67-286 338-516 (933)
284 KOG2610 Uncharacterized conser 60.7 71 0.0015 32.2 9.5 154 74-250 114-272 (491)
285 PF13431 TPR_17: Tetratricopep 60.7 3.1 6.7E-05 26.4 0.2 30 366-395 4-33 (34)
286 PF11663 Toxin_YhaV: Toxin wit 60.1 9.2 0.0002 32.9 3.0 35 234-270 104-138 (140)
287 PF13174 TPR_6: Tetratricopept 60.0 22 0.00048 21.5 4.2 28 379-406 4-31 (33)
288 KOG0276 Vesicle coat complex C 60.0 2.7E+02 0.0059 30.6 14.6 26 189-214 665-690 (794)
289 COG4700 Uncharacterized protei 59.9 1.5E+02 0.0032 27.5 13.3 117 185-305 84-203 (251)
290 COG1729 Uncharacterized protei 59.1 1.8E+02 0.004 28.4 12.1 88 166-253 152-243 (262)
291 cd08819 CARD_MDA5_2 Caspase ac 56.9 59 0.0013 25.8 6.7 14 239-252 50-63 (88)
292 PF04053 Coatomer_WDAD: Coatom 56.7 1.1E+02 0.0024 32.6 11.1 130 67-251 299-428 (443)
293 COG3898 Uncharacterized membra 56.4 2.5E+02 0.0055 29.1 17.9 176 106-304 190-371 (531)
294 PF07721 TPR_4: Tetratricopept 56.3 18 0.0004 21.1 3.1 22 193-214 4-25 (26)
295 PF11848 DUF3368: Domain of un 55.7 41 0.00089 23.3 5.2 31 272-302 14-44 (48)
296 PF07079 DUF1347: Protein of u 55.5 2.8E+02 0.0061 29.4 19.9 143 73-238 16-180 (549)
297 PF11848 DUF3368: Domain of un 54.7 41 0.00088 23.3 5.0 39 231-269 8-46 (48)
298 COG3118 Thioredoxin domain-con 54.6 2.3E+02 0.005 28.2 13.3 151 113-284 143-296 (304)
299 KOG1130 Predicted G-alpha GTPa 54.5 1.2E+02 0.0025 31.6 10.1 64 225-288 195-263 (639)
300 KOG0276 Vesicle coat complex C 54.5 99 0.0022 33.7 9.9 45 201-251 648-692 (794)
301 PF07719 TPR_2: Tetratricopept 53.3 33 0.0007 20.9 4.2 26 193-218 4-29 (34)
302 PRK10564 maltose regulon perip 52.0 33 0.00072 34.0 5.7 37 106-142 259-295 (303)
303 PF13525 YfiO: Outer membrane 51.9 2E+02 0.0044 26.7 16.6 146 109-289 10-170 (203)
304 KOG1550 Extracellular protein 51.7 3.7E+02 0.008 29.7 14.8 150 120-290 228-394 (552)
305 PF10579 Rapsyn_N: Rapsyn N-te 51.3 32 0.00069 26.7 4.3 45 202-246 18-64 (80)
306 COG0457 NrfG FOG: TPR repeat [ 50.8 1.8E+02 0.004 25.9 20.0 166 104-288 59-230 (291)
307 PF00515 TPR_1: Tetratricopept 50.7 43 0.00093 20.6 4.4 29 105-133 2-30 (34)
308 PF07719 TPR_2: Tetratricopept 49.8 45 0.00096 20.3 4.4 28 106-133 3-30 (34)
309 TIGR03504 FimV_Cterm FimV C-te 49.5 37 0.0008 23.1 4.0 22 231-252 5-26 (44)
310 TIGR03504 FimV_Cterm FimV C-te 49.2 36 0.00077 23.2 3.9 37 265-301 4-40 (44)
311 KOG1920 IkappaB kinase complex 49.2 5.4E+02 0.012 30.8 15.5 104 187-306 932-1041(1265)
312 TIGR02561 HrpB1_HrpK type III 49.1 1.9E+02 0.0042 25.6 11.4 61 191-255 8-74 (153)
313 PF08631 SPO22: Meiosis protei 48.8 2.8E+02 0.006 27.4 22.0 188 107-310 39-254 (278)
314 KOG2610 Uncharacterized conser 48.5 2E+02 0.0042 29.2 10.3 115 169-286 117-235 (491)
315 PF13181 TPR_8: Tetratricopept 48.3 44 0.00095 20.4 4.2 27 192-218 3-29 (34)
316 TIGR00305 probable toxin-antit 47.8 15 0.00032 30.8 2.4 22 486-507 86-108 (114)
317 KOG2041 WD40 repeat protein [G 46.6 4.4E+02 0.0096 29.6 13.3 24 105-128 853-876 (1189)
318 COG2351 Transthyretin-like pro 46.4 12 0.00027 31.1 1.6 28 538-565 81-112 (124)
319 PF13934 ELYS: Nuclear pore co 44.0 3E+02 0.0064 26.3 11.0 112 141-282 78-198 (226)
320 PF10366 Vps39_1: Vacuolar sor 43.9 1.3E+02 0.0028 25.0 7.3 26 263-288 42-67 (108)
321 KOG3040 Predicted sugar phosph 43.8 33 0.00071 32.0 4.0 132 368-512 65-212 (262)
322 KOG2280 Vacuolar assembly/sort 43.3 3.1E+02 0.0067 30.9 11.8 112 104-250 684-795 (829)
323 COG4455 ImpE Protein of avirul 43.2 1.7E+02 0.0036 27.9 8.4 17 194-210 39-55 (273)
324 PRK10564 maltose regulon perip 43.1 42 0.00092 33.3 4.9 29 228-256 260-288 (303)
325 PF11663 Toxin_YhaV: Toxin wit 42.5 23 0.0005 30.6 2.6 31 168-200 108-138 (140)
326 TIGR02508 type_III_yscG type I 41.8 2E+02 0.0043 23.7 8.0 79 170-255 20-98 (115)
327 PF11846 DUF3366: Domain of un 41.7 86 0.0019 29.0 6.8 51 202-252 120-171 (193)
328 PF13512 TPR_18: Tetratricopep 41.5 2.5E+02 0.0053 24.7 12.2 70 169-240 24-97 (142)
329 COG4785 NlpI Lipoprotein NlpI, 41.4 3.2E+02 0.007 26.0 16.3 189 77-305 79-276 (297)
330 PRK13342 recombination factor 41.4 2.8E+02 0.0061 29.2 11.4 104 172-277 154-282 (413)
331 COG1747 Uncharacterized N-term 41.2 4.9E+02 0.011 28.1 17.2 164 101-288 63-233 (711)
332 COG4752 Uncharacterized protei 41.0 39 0.00085 29.4 3.8 61 428-490 89-150 (190)
333 PF06844 DUF1244: Protein of u 40.7 10 0.00022 27.9 0.3 37 492-532 20-56 (68)
334 KOG2114 Vacuolar assembly/sort 40.5 6.3E+02 0.014 29.1 17.0 165 107-303 337-501 (933)
335 PF13525 YfiO: Outer membrane 39.0 3.2E+02 0.007 25.3 14.5 50 169-218 19-70 (203)
336 KOG1585 Protein required for f 38.5 3.8E+02 0.0083 26.1 14.2 79 206-287 74-157 (308)
337 KOG4648 Uncharacterized conser 36.1 1.3E+02 0.0028 30.5 7.0 48 163-211 105-152 (536)
338 PF11846 DUF3366: Domain of un 35.9 1.2E+02 0.0025 28.1 6.7 59 230-288 113-172 (193)
339 PF09797 NatB_MDM20: N-acetylt 35.8 97 0.0021 32.0 6.7 106 169-284 197-310 (365)
340 COG4785 NlpI Lipoprotein NlpI, 35.5 1.3E+02 0.0029 28.5 6.6 78 201-281 76-154 (297)
341 KOG4077 Cytochrome c oxidase, 35.4 1.6E+02 0.0035 25.3 6.5 35 218-252 77-111 (149)
342 cd08819 CARD_MDA5_2 Caspase ac 35.0 2.3E+02 0.0051 22.5 7.3 68 173-246 20-87 (88)
343 COG4455 ImpE Protein of avirul 34.7 1.7E+02 0.0037 27.9 7.1 79 192-271 3-83 (273)
344 KOG2908 26S proteasome regulat 33.8 3.3E+02 0.0072 27.7 9.4 88 194-281 79-178 (380)
345 TIGR02508 type_III_yscG type I 33.7 2.7E+02 0.0059 22.9 7.5 54 232-291 46-99 (115)
346 KOG2297 Predicted translation 33.7 83 0.0018 31.3 5.2 69 170-247 270-343 (412)
347 PF14669 Asp_Glu_race_2: Putat 33.3 88 0.0019 28.9 5.0 56 195-250 137-206 (233)
348 COG4105 ComL DNA uptake lipopr 33.3 4.6E+02 0.01 25.5 21.2 169 102-288 32-232 (254)
349 PF07163 Pex26: Pex26 protein; 33.1 69 0.0015 31.5 4.6 95 67-178 87-181 (309)
350 COG3947 Response regulator con 33.1 1.6E+02 0.0034 29.3 7.0 71 192-263 281-356 (361)
351 PF10579 Rapsyn_N: Rapsyn N-te 32.8 1.3E+02 0.0029 23.4 5.2 47 237-283 18-66 (80)
352 KOG1464 COP9 signalosome, subu 32.1 5E+02 0.011 25.5 11.3 170 166-335 38-241 (440)
353 KOG1130 Predicted G-alpha GTPa 32.0 5.6E+02 0.012 26.9 10.8 129 160-288 200-343 (639)
354 KOG2041 WD40 repeat protein [G 31.9 5.8E+02 0.013 28.7 11.4 65 67-133 696-763 (1189)
355 COG2909 MalT ATP-dependent tra 31.6 7.8E+02 0.017 28.5 12.8 201 72-294 424-652 (894)
356 KOG1920 IkappaB kinase complex 31.6 3.5E+02 0.0076 32.3 10.4 48 195-250 1004-1051(1265)
357 PRK13341 recombination factor 31.5 4.8E+02 0.011 29.9 11.7 105 170-277 169-310 (725)
358 COG0735 Fur Fe2+/Zn2+ uptake r 31.3 2E+02 0.0044 25.2 7.0 59 247-306 8-66 (145)
359 KOG4077 Cytochrome c oxidase, 30.8 2.3E+02 0.005 24.4 6.6 59 173-232 67-125 (149)
360 PF11838 ERAP1_C: ERAP1-like C 30.3 5.6E+02 0.012 25.5 12.5 89 169-260 144-237 (324)
361 COG5187 RPN7 26S proteasome re 29.8 5.7E+02 0.012 25.5 11.6 111 105-233 116-235 (412)
362 KOG4648 Uncharacterized conser 29.7 1.6E+02 0.0035 29.8 6.5 88 198-288 105-193 (536)
363 PRK12402 replication factor C 29.2 4.3E+02 0.0093 26.5 10.2 57 380-439 257-314 (337)
364 PF13470 PIN_3: PIN domain 28.7 47 0.001 27.8 2.5 23 486-508 95-118 (119)
365 COG0735 Fur Fe2+/Zn2+ uptake r 28.4 2.4E+02 0.0052 24.8 7.0 64 211-275 7-70 (145)
366 PF14689 SPOB_a: Sensor_kinase 28.2 84 0.0018 23.1 3.4 47 170-218 5-51 (62)
367 COG2178 Predicted RNA-binding 28.1 4.7E+02 0.01 24.4 8.7 75 171-254 19-98 (204)
368 smart00777 Mad3_BUB1_I Mad3/BU 28.1 2.4E+02 0.0052 24.2 6.6 41 244-284 82-123 (125)
369 COG3947 Response regulator con 28.0 6.3E+02 0.014 25.3 11.0 71 227-298 281-356 (361)
370 PF12796 Ank_2: Ankyrin repeat 27.7 1.4E+02 0.003 23.0 5.0 8 199-206 32-39 (89)
371 COG4649 Uncharacterized protei 27.2 5E+02 0.011 23.9 15.1 126 169-294 72-201 (221)
372 PF08311 Mad3_BUB1_I: Mad3/BUB 26.6 3.8E+02 0.0083 22.8 7.8 42 208-249 81-123 (126)
373 COG5108 RPO41 Mitochondrial DN 26.5 3.5E+02 0.0075 30.2 8.7 77 195-274 33-117 (1117)
374 PRK15180 Vi polysaccharide bio 26.4 3.7E+02 0.0081 28.7 8.7 116 168-286 302-417 (831)
375 PF11817 Foie-gras_1: Foie gra 26.1 2.2E+02 0.0048 27.5 7.0 57 230-286 183-244 (247)
376 PF12796 Ank_2: Ankyrin repeat 25.7 1.7E+02 0.0036 22.6 5.1 81 199-294 3-86 (89)
377 PF05991 NYN_YacP: YacP-like N 25.5 1.3E+02 0.0027 27.3 4.8 109 410-528 1-129 (166)
378 smart00028 TPR Tetratricopepti 24.6 1.3E+02 0.0027 16.7 3.4 25 193-217 4-28 (34)
379 PF14689 SPOB_a: Sensor_kinase 24.5 1.1E+02 0.0023 22.6 3.4 47 205-253 5-51 (62)
380 PRK14956 DNA polymerase III su 23.9 9.4E+02 0.02 26.0 14.1 101 172-296 183-284 (484)
381 PF06552 TOM20_plant: Plant sp 23.6 5.9E+02 0.013 23.5 9.6 114 171-291 7-138 (186)
382 KOG1941 Acetylcholine receptor 22.8 6.5E+02 0.014 26.0 9.3 119 168-287 135-273 (518)
383 PHA02875 ankyrin repeat protei 22.7 4.6E+02 0.0099 27.3 9.2 100 177-281 50-153 (413)
384 KOG4567 GTPase-activating prot 22.6 4.6E+02 0.01 26.4 8.1 74 173-251 261-344 (370)
385 PF12926 MOZART2: Mitotic-spin 22.5 4E+02 0.0087 21.2 8.4 43 176-218 29-71 (88)
386 KOG2066 Vacuolar assembly/sort 22.4 7.1E+02 0.015 28.4 10.3 45 103-151 391-435 (846)
387 PF12926 MOZART2: Mitotic-spin 22.4 4E+02 0.0088 21.2 7.3 43 246-288 29-71 (88)
388 KOG0550 Molecular chaperone (D 22.0 9.5E+02 0.021 25.3 15.7 20 71-90 91-110 (486)
389 PF08870 DUF1832: Domain of un 22.0 3.5E+02 0.0076 22.7 6.4 88 172-274 6-96 (113)
390 KOG4234 TPR repeat-containing 21.9 6.8E+02 0.015 23.6 8.7 92 114-218 105-196 (271)
391 PF02847 MA3: MA3 domain; Int 21.3 2.2E+02 0.0048 23.3 5.3 22 195-216 7-28 (113)
392 PRK11639 zinc uptake transcrip 21.3 3.7E+02 0.0079 24.3 7.0 28 278-305 43-70 (169)
393 PRK05707 DNA polymerase III su 21.0 3.7E+02 0.008 27.4 7.7 93 402-504 66-160 (328)
394 PF08780 NTase_sub_bind: Nucle 20.8 3.9E+02 0.0085 22.7 6.7 100 119-252 5-108 (124)
395 TIGR03581 EF_0839 conserved hy 20.8 2.8E+02 0.0061 26.2 5.9 82 170-252 136-235 (236)
396 COG1569 Predicted nucleic acid 20.7 1.7E+02 0.0037 25.5 4.3 43 466-508 63-113 (142)
397 PRK09857 putative transposase; 20.5 5.3E+02 0.011 25.7 8.5 56 237-293 218-273 (292)
398 COG5187 RPN7 26S proteasome re 20.3 8.7E+02 0.019 24.3 13.4 98 189-288 114-220 (412)
399 COG5159 RPN6 26S proteasome re 20.1 3.7E+02 0.008 26.7 6.8 53 234-286 12-71 (421)
400 TIGR03059 psaOeuk photosystem 20.1 58 0.0013 24.7 1.2 29 468-497 30-58 (82)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-45 Score=413.90 Aligned_cols=356 Identities=16% Similarity=0.169 Sum_probs=326.3
Q ss_pred ccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCC
Q 007684 29 MHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRES 102 (593)
Q Consensus 29 ~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (593)
|..||..+|+.+|.+|+.. +..++..|.+.|+.||..+ +.||.+|++.|++++|..+|.+|. +.+..+
T Consensus 432 M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~------~~Gv~P 505 (1060)
T PLN03218 432 IRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV------NAGVEA 505 (1060)
T ss_pred cCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH------HcCCCC
Confidence 4559999999999999955 7899999999999999999 999999999999999999997665 456677
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..|||+||.+|.+. |++++|.++|++|.
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~----------------G~~deA~~lf~eM~ 569 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS----------------GAVDRAFDVLAEMK 569 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999997 59999999999998
Q ss_pred h--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 007684 183 T--DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260 (593)
Q Consensus 183 ~--~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 260 (593)
. .|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 6 68999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccc
Q 007684 261 PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL 340 (593)
Q Consensus 261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~ 340 (593)
.+|++||.+|++.|+.++|.+++++|.+.|+.|+..+|+.|+.+|++.+..+.+ ..+.+.|.+.|..++-.+
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA------~~lf~eM~~~g~~Pdvvt-- 721 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA------LELYEDIKSIKLRPTVST-- 721 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH------HHHHHHHHHcCCCCCHHH--
Confidence 999999999999999999999999999999999999999999999988765543 456667777776555443
Q ss_pred cCCceEEEEecccCCCCcCcccccccccCC-----CHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeecc
Q 007684 341 GSGKWRVERTQIDENGVCCSCNERLVCIDI-----DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGA 415 (593)
Q Consensus 341 ~~~~~~v~~~~i~~~g~c~~~~~al~~~~l-----~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~ 415 (593)
.+++|+.+.+++..++|++.++. -.|+..+|..+|.+|++.|++++|.++|++|++.|..||.++.+.
T Consensus 722 -------yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 722 -------MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred -------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 36889999999999999999882 237789999999999999999999999999999999999998888
Q ss_pred ceeccc
Q 007684 416 NVGLVN 421 (593)
Q Consensus 416 nv~~~~ 421 (593)
.++++.
T Consensus 795 LIglc~ 800 (1060)
T PLN03218 795 ITGLCL 800 (1060)
T ss_pred HHHHHH
Confidence 887654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.1e-43 Score=400.92 Aligned_cols=386 Identities=12% Similarity=0.109 Sum_probs=330.2
Q ss_pred CchhHHHhhhccccccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCccc
Q 007684 15 SPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTG 88 (593)
Q Consensus 15 ~~~~~~~~~~~~~~~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~ 88 (593)
..+|..|.+. -...|+..+++.++.++... +..++..|.. |+..+ +.+|.+|++.|++++|..++..
T Consensus 390 l~Lfd~M~~~---gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 390 IDLLEDMEKR---GLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred HHHHHHHHhC---CCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 3444444442 22345666677777777643 5566666654 88888 9999999999999999999966
Q ss_pred ccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCccccc
Q 007684 89 TMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN 168 (593)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~ 168 (593)
+. +.+..++..+|+.||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.
T Consensus 463 M~------~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~---------------- 520 (1060)
T PLN03218 463 VQ------EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA---------------- 520 (1060)
T ss_pred HH------HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC----------------
Confidence 55 46677778889999999999999999999999999999999999999999999987
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCChhHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS--FGIPPKLRSYGPALFGFCKLGNTDKAYE 246 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~ 246 (593)
|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|++
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999999999999999999999999999999999999999999976 6899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHh
Q 007684 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREG 326 (593)
Q Consensus 247 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~ 326 (593)
+|++|.+.|+.|+..+|++||.+|++.|++++|.++|++|.+.|+.|+..||+.++.+|++.+..+. +..+.+.
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee------A~~l~~e 674 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK------AFEILQD 674 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH------HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988776553 3566777
Q ss_pred hhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCC-----HHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 007684 327 IVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDID-----PRETENFASSLSNLACQREVRSDFNKFQEW 401 (593)
Q Consensus 327 ~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~-----~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~ 401 (593)
|.+.|..+... +.+++|+.+.+|+..++|++.|+.. .|+..+|+.+|.+|++.|++++|+++|++|
T Consensus 675 M~k~G~~pd~~---------tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 675 ARKQGIKLGTV---------SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHcCCCCCHH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77777655533 4578999999999999999999822 478999999999999999999999999999
Q ss_pred HHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhCCCCCceE
Q 007684 402 LGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPL 448 (593)
Q Consensus 402 l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~~~~~~~l 448 (593)
.+.|..||.++....+..+.+.+ .++.+.+.+.+|...+-.|-
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G----~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKD----DADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHcCCCCC
Confidence 99999999999888887776653 35555555555544454443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-42 Score=397.68 Aligned_cols=378 Identities=12% Similarity=0.097 Sum_probs=259.3
Q ss_pred CCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH
Q 007684 31 QSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE 104 (593)
Q Consensus 31 ~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 104 (593)
.||.+||+++|.+++.. ...++..|.+.|+.|+..+ +.||.+|++.|++++|..+|+.+. .++.
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----------~~d~ 253 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----------RRDC 253 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----------CCCc
Confidence 45555665555555422 3455556666666677777 888889999999999999997665 3455
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCC-------------------CCCCcc
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSE-------------------NGDREN 165 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~-------------------~~~~~~ 165 (593)
.+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|...+..+.++ .++++|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999876433222 122445
Q ss_pred cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 007684 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAY 245 (593)
Q Consensus 166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 245 (593)
+++|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.
T Consensus 334 ~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 409 (857)
T PLN03077 334 LSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV 409 (857)
T ss_pred HhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence 55555666666665554 35555566666666666666666666666655555566666666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------------------------cCCCCH
Q 007684 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL------------------------------VRQVSE 295 (593)
Q Consensus 246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~------------------------------~~~~~~ 295 (593)
++++.|.+.|+.|+..+|++||++|++.|++++|.++|++|.+. +..|+.
T Consensus 410 ~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~ 489 (857)
T PLN03077 410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNS 489 (857)
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCH
Confidence 66666665566666666666666666666666666655555331 122333
Q ss_pred HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHH
Q 007684 296 STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRET 375 (593)
Q Consensus 296 ~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~ 375 (593)
.||..++.+|++.+..+.+ ..+...+.+.|... +-.+.+++|++|.+|+..++|.+.|+..+++.
T Consensus 490 ~t~~~lL~a~~~~g~l~~~------~~i~~~~~~~g~~~---------~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~ 554 (857)
T PLN03077 490 VTLIAALSACARIGALMCG------KEIHAHVLRTGIGF---------DGFLPNALLDLYVRCGRMNYAWNQFNSHEKDV 554 (857)
T ss_pred hHHHHHHHHHhhhchHHHh------HHHHHHHHHhCCCc---------cceechHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence 3333333333332222211 12333333344332 23467899999999999999999999668999
Q ss_pred HHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhC
Q 007684 376 ENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMS 441 (593)
Q Consensus 376 ~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~ 441 (593)
.+|+.+|.+|++.|+.++|+++|++|.+.|..||.++....+..+...+ .++++.+.|.+|.
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g----~v~ea~~~f~~M~ 616 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG----MVTQGLEYFHSME 616 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC----hHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888887776653 4677777777665
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=381.34 Aligned_cols=396 Identities=12% Similarity=0.040 Sum_probs=325.6
Q ss_pred ccccCchhHHHhhhccccccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCC
Q 007684 11 LIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSA 84 (593)
Q Consensus 11 ~~r~~~~~~~~~~~~~~~~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~ 84 (593)
+..|..+|..+... -...||..+|+++|.++.+. +..++..|.+.|+.|+..+ +.||.+|++.|++++|..
T Consensus 103 ~~~Al~~f~~m~~~---~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 103 HREALELFEILEAG---CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred HHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHH
Confidence 34445566666542 12348999999999999865 6788899999999999999 999999999999999999
Q ss_pred CcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCC-------
Q 007684 85 PNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSES------- 157 (593)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~------- 157 (593)
+|+++. .++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|...+..+.
T Consensus 180 lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 180 LFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 997776 246667999999999999999999999999999988888888777766665433221
Q ss_pred ----------------------------C---------------CCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHH
Q 007684 158 ----------------------------S---------------ENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT 194 (593)
Q Consensus 158 ----------------------------~---------------~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 194 (593)
+ ..++.+|+++|+.++|+++|++|.+.|+.||..||+
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~ 329 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1 123466788899999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 274 (593)
++|.+|++.|++++|.+++++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|
T Consensus 330 ~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999964 79999999999999999
Q ss_pred CHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhc-CCCcccccccccCCceEEEEeccc
Q 007684 275 KVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVR-GGGGWHGQGWLGSGKWRVERTQID 353 (593)
Q Consensus 275 ~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~g~~~~g~~~~~~~~~~v~~~~i~ 353 (593)
+.++|.++|++|.+.|+.|+..||..++.+|+..+..+.+. .+.+.|.+ .|..+. .....++|+
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~------~~f~~m~~~~g~~p~---------~~~y~~li~ 470 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGW------EIFQSMSENHRIKPR---------AMHYACMIE 470 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHH------HHHHHHHHhcCCCCC---------ccchHhHHH
Confidence 99999999999999999999999999999999888776554 45555543 344333 234578999
Q ss_pred CCCCcCcccccccccCCC--HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHH
Q 007684 354 ENGVCCSCNERLVCIDID--PRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLN 431 (593)
Q Consensus 354 ~~g~c~~~~~al~~~~l~--~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~ 431 (593)
.+++++..++|.+.++-. .|+..+|..++.+|+..|+++.+...++++++.. |.++....+.+..|...| +++
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G----~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSG----RQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCC----CHH
Confidence 999999999999999833 3678899999999999999999999999987543 334444455555555554 345
Q ss_pred HHHHHHHhhCCC
Q 007684 432 TVVNRLRQMSPS 443 (593)
Q Consensus 432 ~vv~~l~~~~~~ 443 (593)
++.+.+++|...
T Consensus 546 ~A~~v~~~m~~~ 557 (697)
T PLN03081 546 EAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHHc
Confidence 555555444433
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-40 Score=377.55 Aligned_cols=351 Identities=15% Similarity=0.096 Sum_probs=313.7
Q ss_pred ccccCCCcccHHHHHHHHHHh-----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcC
Q 007684 27 PLMHQSNCHTYRSLLCWHMHS-----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARR 100 (593)
Q Consensus 27 ~~~~~pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 100 (593)
..|..||+++||++|.+|++. +..++.+|...|+.||..| +.+|.+|++.+.+..+.+++..+. +.+.
T Consensus 145 ~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~------~~g~ 218 (857)
T PLN03077 145 GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV------RFGF 218 (857)
T ss_pred hcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH------HcCC
Confidence 456689999999999999855 7888999999999999999 999999999999999888886655 4677
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
.++..+||+||.+|++.|++++|.++|++|. .||.++||+||.+|.+. |+.++|+++|++
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~----------------g~~~eAl~lf~~ 278 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFEN----------------GECLEGLELFFT 278 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhC----------------CCHHHHHHHHHH
Confidence 7777889999999999999999999999997 46889999999999987 699999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 007684 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260 (593)
Q Consensus 181 M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 260 (593)
|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||.+|.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4889
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccc
Q 007684 261 PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWL 340 (593)
Q Consensus 261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~ 340 (593)
.+|++||.+|++.|+.++|.++|++|.+.++.|+..||..++.+|++.+..+.+ ..+.+.+.+.|....
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a------~~l~~~~~~~g~~~~----- 423 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG------VKLHELAERKGLISY----- 423 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH------HHHHHHHHHhCCCcc-----
Confidence 999999999999999999999999999999999999999999999888766644 456666777765433
Q ss_pred cCCceEEEEecccCCCCcCcccccccccC-CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceec
Q 007684 341 GSGKWRVERTQIDENGVCCSCNERLVCID-IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGL 419 (593)
Q Consensus 341 ~~~~~~v~~~~i~~~g~c~~~~~al~~~~-l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~ 419 (593)
..+.+++|++|++|+..++|.+.|+ +.+++..+|+.+|.+|+..|+.++|+++|++|+. +.+||.+.....+..
T Consensus 424 ----~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 424 ----VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 3356789999999999999999999 6667889999999999999999999999999986 578888877777665
Q ss_pred ccCC
Q 007684 420 VNQH 423 (593)
Q Consensus 420 ~~~~ 423 (593)
+...
T Consensus 499 ~~~~ 502 (857)
T PLN03077 499 CARI 502 (857)
T ss_pred Hhhh
Confidence 5443
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-39 Score=364.83 Aligned_cols=361 Identities=13% Similarity=0.081 Sum_probs=323.5
Q ss_pred CCcccHHHHHHHHHHh-----CCChhhHHhhcC-Cccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH
Q 007684 32 SNCHTYRSLLCWHMHS-----FTKPITDIKQNR-FSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE 104 (593)
Q Consensus 32 pd~~~~~~ll~~~~~~-----~~~~~~~m~~~g-~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 104 (593)
++..+|+++|.++... +..++..|...+ +.|+..+ +.++.+|++.++++.+..++..+. +.+..++.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~------~~g~~~~~ 158 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVE------SSGFEPDQ 158 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HhCCCcch
Confidence 3556899999999854 778899998765 7899999 999999999999999998885554 46777788
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
.+||.+|.+|++.|++++|.++|++|.+ ||..+||+||.+|.+. |++++|+++|++|.+.
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~----------------g~~~~A~~lf~~M~~~ 218 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDA----------------GNYREAFALFREMWED 218 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHC----------------cCHHHHHHHHHHHHHh
Confidence 8899999999999999999999999974 7999999999999997 6999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 264 (593)
|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++|.. +|..+||
T Consensus 219 g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n 294 (697)
T PLN03081 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWN 294 (697)
T ss_pred CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999964 6899999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCc
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGK 344 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~ 344 (593)
+||.+|++.|+.++|.++|++|.+.|+.|+..||..++.+|++.+..+.+ ..+.+.|.+.|...+
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a------~~i~~~m~~~g~~~d--------- 359 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA------KQAHAGLIRTGFPLD--------- 359 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH------HHHHHHHHHhCCCCC---------
Confidence 99999999999999999999999999999999999999999888765533 466777777775443
Q ss_pred eEEEEecccCCCCcCcccccccccC-CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCC
Q 007684 345 WRVERTQIDENGVCCSCNERLVCID-IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQH 423 (593)
Q Consensus 345 ~~v~~~~i~~~g~c~~~~~al~~~~-l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~ 423 (593)
..+.+++|++|++|+..++|.+.|+ +..++..+|+.+|.+|++.|+.++|+++|++|.+.|..||.++....+..+...
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 4577899999999999999999999 556889999999999999999999999999999999999999988888777665
Q ss_pred CCChhhHHHHHHHHHhhC
Q 007684 424 NFSFYQLNTVVNRLRQMS 441 (593)
Q Consensus 424 ~~~~~~l~~vv~~l~~~~ 441 (593)
+ .++++.+.|..|.
T Consensus 440 g----~~~~a~~~f~~m~ 453 (697)
T PLN03081 440 G----LSEQGWEIFQSMS 453 (697)
T ss_pred C----cHHHHHHHHHHHH
Confidence 3 4677777777664
No 7
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=99.83 E-value=3.2e-21 Score=173.29 Aligned_cols=131 Identities=28% Similarity=0.434 Sum_probs=97.6
Q ss_pred CeeeeccceecccCC--CCChhhHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcchHHHHHHHHhCCcEEeCCCCC
Q 007684 409 DAVIDGANVGLVNQH--NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGS 486 (593)
Q Consensus 409 d~vidg~nv~~~~~~--~~~~~~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 486 (593)
-+||||+|||+...+ .|++.+|..++++|++ .|..+++++...+........+.+++.+++|.+.+.+++||.++
T Consensus 4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~ 80 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS 80 (155)
T ss_dssp -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence 379999999874333 5888999999999998 46778888776664333445777889999999999999999999
Q ss_pred C--------ChHHHHHHHHhCCcEEEecchhhccccccccccchhhhhcccEeEEEeecCceeeeCC
Q 007684 487 N--------DDWYWLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIRLSVSRDGLNLLMP 545 (593)
Q Consensus 487 ~--------DD~~~lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~~~~~~~~~~~~~p 545 (593)
+ ||||||++|...+++|||||+||||.+ ....|.+|.++|+++|+|..+.+.+...
T Consensus 81 ~~g~~~~~ydD~~il~~A~~~~a~IVSND~frD~~~---~~~~~~~~~~~~~i~~tf~~~~~~~~~d 144 (155)
T PF11977_consen 81 NYGSRSRNYDDRYILYYAEEKDAVIVSNDRFRDHIF---ENPELRRWIERRLIRFTFVGDEFMPPPD 144 (155)
T ss_dssp ETTEEEEB-HHHHHHHHHHHTT-EEE-S---HHHHH---H-HHHHHHHHHHEE--EEETTEEE--SS
T ss_pred CCCCcccccchHHHHHHHHHcCCEEEeCchHHHHhh---cchHHHHHHHHeeeeEEEECCEEEcCCC
Confidence 8 999999999999999999999999999 6678999999999999998776655444
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.55 E-value=9.6e-13 Score=138.37 Aligned_cols=229 Identities=13% Similarity=0.057 Sum_probs=132.0
Q ss_pred CCChhhHHhhcCCccccc-h-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC---HHHHHHHHHHHHcCCCHHH
Q 007684 48 FTKPITDIKQNRFSADLT-T-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP---EGVLRHKLDMCSKRGDVFE 122 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 122 (593)
+...+..+.+.. |+.. + ..+...|...|++++|...++.++. .....+ ...+..+...|.+.|++++
T Consensus 54 A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 54 AIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLS------RPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 444444554432 3322 2 5566666777777777766654441 111111 1236666667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCH----HHHHHHHH
Q 007684 123 ALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNE----ATFTSVAR 198 (593)
Q Consensus 123 A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~----~ty~~li~ 198 (593)
|+.+|+++.+.. ..+..+++.+..++... |++++|.+.++.+.+.+..++. ..+..+..
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQE----------------KDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHh----------------chHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 777777766542 23455666666666654 4777777777777655422221 23445566
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007684 199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277 (593)
Q Consensus 199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 277 (593)
.+.+.|++++|.++++++.+.. |+ ...+..+...|.+.|+.++|.++++++.+.+-.....+++.+..+|.+.|+.+
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 6667777777777777776532 33 34556666777777777777777777665432222344666677777777777
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 278 KVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 278 ~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
+|...++++.+. .|+...+..+...+
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 777777776653 34444444444444
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.49 E-value=9e-12 Score=130.98 Aligned_cols=264 Identities=14% Similarity=0.084 Sum_probs=192.9
Q ss_pred HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 007684 70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS---QHHYNVLL 146 (593)
Q Consensus 70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~ll 146 (593)
...+...|++++|...|.+++ ...+.....+..+...+...|++++|..+++.+.+.+..++ ...+..+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEML-------KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHH-------hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345678899999999997776 33334455688999999999999999999999987643222 24556666
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL- 225 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~- 225 (593)
..|... |++++|.++|+++.+.. +.+..+++.++..+.+.|++++|.++++.+.+.+-.+..
T Consensus 115 ~~~~~~----------------g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (389)
T PRK11788 115 QDYLKA----------------GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV 177 (389)
T ss_pred HHHHHC----------------CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence 677665 69999999999998764 567889999999999999999999999999875432221
Q ss_pred ---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 007684 226 ---RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE 302 (593)
Q Consensus 226 ---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~ 302 (593)
..|..+...+.+.|+.++|...|+++.+.. +.+...+..+...+.+.|+.++|.++++++.+........++..+.
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 245667788899999999999999998643 2235567888899999999999999999998743222234566666
Q ss_pred HHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHH
Q 007684 303 DWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSL 382 (593)
Q Consensus 303 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i 382 (593)
..|...+..+.+. ...+.+.+ ..| +...+..++
T Consensus 257 ~~~~~~g~~~~A~------~~l~~~~~----------------------------------------~~p-~~~~~~~la 289 (389)
T PRK11788 257 ECYQALGDEAEGL------EFLRRALE----------------------------------------EYP-GADLLLALA 289 (389)
T ss_pred HHHHHcCCHHHHH------HHHHHHHH----------------------------------------hCC-CchHHHHHH
Confidence 6665444322211 11111111 112 223446677
Q ss_pred HHHhhhhhhHHhHHHHHHHHHhc
Q 007684 383 SNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 383 ~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
..+...|+.++|...|+++++..
T Consensus 290 ~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 290 QLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC
Confidence 78888999999999999988864
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.43 E-value=9.6e-12 Score=144.50 Aligned_cols=210 Identities=10% Similarity=0.010 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...+.+.|+.++|...+.+.. ...+.....+..+...|.+.|++++|..+++.+.+.. +.+..+|..+.
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAA-------ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-------HhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 555555666666666666554433 1122233334555555555555555555555555432 22344455554
Q ss_pred HHHHccCCCCCCCCC------------------CCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 007684 147 YVCSCKCGSESSENG------------------DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~------------------~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 208 (593)
.+|...+..+.+... ...+...|++++|.++|+++.+.. +.+..++..++..+...|++++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 687 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTES 687 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 444443200000000 000001135555555555554433 3334455555555555555555
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 209 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
|.++++.+.+... ++...+..+...+.+.|++++|.+.|+.+...+ |+..++..+..++.+.|+.++|.+.++++.+
T Consensus 688 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 688 AKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555544321 233444445555555555555555555554332 3334444455555555555555555555544
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.43 E-value=1.3e-11 Score=143.32 Aligned_cols=327 Identities=9% Similarity=0.029 Sum_probs=188.7
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...|...|++++|...|.+.+ ...+.....+..+...+...|++++|.++|+++.+.+ +.+..++..+.
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~-------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 540 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKAL-------SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALA 540 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-------hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 555566666666666666664443 2222233345555555555566666666666555442 12344444444
Q ss_pred HHHHccCCCCCCCC------------------CCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 007684 147 YVCSCKCGSESSEN------------------GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208 (593)
Q Consensus 147 ~~~~~~~~~~~~~~------------------~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 208 (593)
..+...+..+.+.. +...+.+.|+.++|.++++.+.... +.+..+|..+..++...|++++
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 619 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNK 619 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 44443321111000 0011223467888888888877654 5566778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 209 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
|...++++.+..- .+...+..+..+|.+.|+.++|.++++++.+.. +.+..++..+...+...|+.++|..+++.+.+
T Consensus 620 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 697 (899)
T TIGR02917 620 AVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK 697 (899)
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8888888776431 235567777788888888888888888877532 23456677788888888888888888888876
Q ss_pred ccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCccccccccc
Q 007684 289 LVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCI 368 (593)
Q Consensus 289 ~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~ 368 (593)
.. ..+...+..+...+...+..+.+ ......+....... . +.......+...+..+++.+.+
T Consensus 698 ~~-~~~~~~~~~~~~~~~~~g~~~~A------~~~~~~~~~~~~~~--~---------~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 698 QH-PKAALGFELEGDLYLRQKDYPAA------IQAYRKALKRAPSS--Q---------NAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred hC-cCChHHHHHHHHHHHHCCCHHHH------HHHHHHHHhhCCCc--h---------HHHHHHHHHHHCCCHHHHHHHH
Confidence 43 23444555555555443322211 12222222111100 0 1112223334445555565544
Q ss_pred C----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccC
Q 007684 369 D----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQ 422 (593)
Q Consensus 369 ~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~ 422 (593)
. ..|.+...+..+...|...|+.++|.+.|+++++..++...+..++...+...
T Consensus 760 ~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 760 EAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4 55677778888888899999999999999999987765444444433333333
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=8.1e-10 Score=109.24 Aligned_cols=375 Identities=16% Similarity=0.112 Sum_probs=240.6
Q ss_pred ccHHHHHHHHHHh----CCChhhHHhhcCCccccch-HHHHH--HHhcCCCcccCCC-CcccccchH------Hh-----
Q 007684 35 HTYRSLLCWHMHS----FTKPITDIKQNRFSADLTT-GLCTL--AFSKKSTVNESSA-PNTGTMSNK------SK----- 95 (593)
Q Consensus 35 ~~~~~ll~~~~~~----~~~~~~~m~~~g~~~~~~~-~~li~--~~~~~g~~~~a~~-~~~~~~~~~------~~----- 95 (593)
.+=|.|+...+.. +--++..|.+.|.++.... -.|+. .|-....+--|+. .|-++-+.. ++
T Consensus 117 ~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 117 ETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred cchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3447788777744 5567889999998887777 33333 3433333322211 111111000 00
Q ss_pred --hhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHH
Q 007684 96 --KKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173 (593)
Q Consensus 96 --~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 173 (593)
.-+-.+..+.+|.+||.+.||-...+.|.+++++-.....+.+..+||.+|.+-+-. .
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~--------------------~ 256 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS--------------------V 256 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh--------------------c
Confidence 012234456779999999999999999999999999888899999999999854432 2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH-HHHHH
Q 007684 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM----AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK-AYEVD 248 (593)
Q Consensus 174 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-A~~l~ 248 (593)
..++..+|....+.||..|||+++++.++.|+++. |.+++.+|++.|+.|.+.+|..+|.-+++.++..+ |..+.
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 37899999999999999999999999999998765 56889999999999999999999999999888744 34444
Q ss_pred HHHHh----CCCC-------------------------------------------CCHH---HHHHHHHHHHhcCCHHH
Q 007684 249 AHMGE----SGVV-------------------------------------------PEEP---ELSALLKLSVDAKKVDK 278 (593)
Q Consensus 249 ~~m~~----~g~~-------------------------------------------p~~~---t~~~Ll~~~~~~g~~~~ 278 (593)
.++.. +.++ |+.. -|..++.+.|.....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44331 1111 1111 13445555555566788
Q ss_pred HHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHH---------Hhhhc--CCCcccccccccCCceEE
Q 007684 279 VYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVR---------EGIVR--GGGGWHGQGWLGSGKWRV 347 (593)
Q Consensus 279 a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~--~g~~~~g~~~~~~~~~~v 347 (593)
.+..|+.|.-+-.-|...+...++.+....+..+.-.+.|...... +.|.. ...+.|..+- .
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp-------~ 489 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTP-------E 489 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCCh-------H
Confidence 8899999999999999999999999999999999888999763222 22221 1123332210 0
Q ss_pred EEecccCCCCcCc--------ccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCc-Ceeeecccee
Q 007684 348 ERTQIDENGVCCS--------CNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPF-DAVIDGANVG 418 (593)
Q Consensus 348 ~~~~i~~~g~c~~--------~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~-d~vidg~nv~ 418 (593)
...+-....+|-. ..+-++..+++ ...++....-+.+.|+.++|.++|.-++++|... -.-.-++.+-
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~---~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQDWP---ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCC---hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 0001111122210 00111111111 2345555666889999999999999998765321 1111112222
Q ss_pred cccCC--CCChhhHHHHHHHHHh
Q 007684 419 LVNQH--NFSFYQLNTVVNRLRQ 439 (593)
Q Consensus 419 ~~~~~--~~~~~~l~~vv~~l~~ 439 (593)
++... ..++.|.-.+++....
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 22111 3366777777777754
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=5.1e-12 Score=90.45 Aligned_cols=49 Identities=22% Similarity=0.493 Sum_probs=24.2
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271 (593)
Q Consensus 223 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~ 271 (593)
||..+||++|.+|++.|++++|+++|++|.+.|++||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444445555555555555555555555544445555555555544443
No 14
>PF13041 PPR_2: PPR repeat family
Probab=99.27 E-value=8.1e-12 Score=89.37 Aligned_cols=50 Identities=30% Similarity=0.467 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 007684 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK 237 (593)
Q Consensus 188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 237 (593)
||..+||++|++|++.|++++|+++|++|++.|+.||..||+.+|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.20 E-value=3e-09 Score=118.69 Aligned_cols=298 Identities=9% Similarity=-0.021 Sum_probs=203.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~l 145 (593)
-.++..+.+.|+.++|..++...+ ...+.+...+..++.++...|++++|...|+++.+. .|+. ..+..+
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l-------~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~l 116 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRV-------LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLV 116 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHH-------HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 567778899999999999997777 555666666777778888899999999999999887 4544 444444
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
-.++... |+.++|.+.|++..+.. +.+...+..+..++...|+.++|...++++.... |+.
T Consensus 117 a~~l~~~----------------g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~ 177 (656)
T PRK15174 117 ASVLLKS----------------KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPR 177 (656)
T ss_pred HHHHHHc----------------CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCC
Confidence 4466665 69999999999998764 4567788899999999999999999999887643 433
Q ss_pred -ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007684 226 -RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDW 304 (593)
Q Consensus 226 -~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~ 304 (593)
..+.. +..+.+.|+.++|.++++.+....-.++...+..+..++...|+.++|...+++..+... -+...+..+-..
T Consensus 178 ~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLA 255 (656)
T ss_pred HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 23332 345888999999999999987654334455566667888899999999999999987432 233344444444
Q ss_pred Hhcchhhhhccccchhh-hHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHH
Q 007684 305 FDSVDAAEIGVLNWDVS-KVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFA 379 (593)
Q Consensus 305 ~~~~~~~~~~~~~~d~~-~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~ 379 (593)
+...+...... -.+. .+.+++...-. + ..+...+...+..-+..++|+..++ +.|.+...+.
T Consensus 256 l~~~G~~~eA~--~~A~~~~~~Al~l~P~--~---------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 256 YYQSGRSREAK--LQAAEHWRHALQFNSD--N---------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred HHHcCCchhhH--HHHHHHHHHHHhhCCC--C---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44333222100 0011 11222211100 0 0011112222223344555555544 6777777777
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684 380 SSLSNLACQREVRSDFNKFQEWLGRHGP 407 (593)
Q Consensus 380 ~~i~~l~~~~~~~~a~~~f~~~l~~~~~ 407 (593)
.+...|...|+.++|+..|++.++.++.
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 7888899999999999999999987553
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.11 E-value=1.1e-08 Score=114.24 Aligned_cols=295 Identities=8% Similarity=-0.011 Sum_probs=189.3
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~l 145 (593)
..+..+....|++++|...+++.+ ...+.....+..+...+.+.|++++|...++++.+. .|+ ...+..+
T Consensus 80 ~~l~~~~l~~g~~~~A~~~l~~~l-------~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~l 150 (656)
T PRK15174 80 RRWVISPLASSQPDAVLQVVNKLL-------AVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALH 150 (656)
T ss_pred HHHhhhHhhcCCHHHHHHHHHHHH-------HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 556667778999999999997766 444555667888888999999999999999998876 444 4566666
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
..++... |+.++|.+.++.+..... .+...+..+ ..+...|++++|..+++.+.+..-.++.
T Consensus 151 a~~l~~~----------------g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~ 212 (656)
T PRK15174 151 LRTLVLM----------------DKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQ 212 (656)
T ss_pred HHHHHHC----------------CChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcch
Confidence 6677776 588888888888766542 233333333 3477788888888888887664322344
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHccCCCC-HHHHHH
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK----VYEILHRLRTLVRQVS-ESTFKI 300 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~----a~~~l~~m~~~~~~~~-~~t~~~ 300 (593)
..+..+..++.+.|+.++|.+.+++..+.. .-+...+..+...+...|+.++ |...+++..+. .|+ ...+..
T Consensus 213 ~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~ 289 (656)
T PRK15174 213 ESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTL 289 (656)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHH
Confidence 455556677888888888888888887643 2245557778888888888775 77888887663 343 334444
Q ss_pred HHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHH
Q 007684 301 IEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETE 376 (593)
Q Consensus 301 l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~ 376 (593)
+-..+...+..+.+. ..+.+++...-. +.. +...+...+...+..++|++.++ ..|.+..
T Consensus 290 lg~~l~~~g~~~eA~-----~~l~~al~l~P~--~~~---------a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 290 YADALIRTGQNEKAI-----PLLQQSLATHPD--LPY---------VRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHHHHCCCHHHHH-----HHHHHHHHhCCC--CHH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 444443333222111 122222221110 100 01112222333455566666665 4555444
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684 377 NFASSLSNLACQREVRSDFNKFQEWLGRHGP 407 (593)
Q Consensus 377 ~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~ 407 (593)
.+......+...|+.++|.+.|++.++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 4444556788999999999999999987654
No 17
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=2.7e-09 Score=105.63 Aligned_cols=215 Identities=12% Similarity=0.117 Sum_probs=129.6
Q ss_pred CCccccccccccccCchhHHHhhhccccccCCCcccHHHHHHHHHHh-CCChhhHHhhcCCccccch-HHHHHHHhcCCC
Q 007684 1 MLRGNFLTPSLIRTSPFLTFLSKISLPLMHQSNCHTYRSLLCWHMHS-FTKPITDIKQNRFSADLTT-GLCTLAFSKKST 78 (593)
Q Consensus 1 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~pd~~~~~~ll~~~~~~-~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~ 78 (593)
||+|-|.-.++-||-.++.-.-.. ..+-+.-+||.+|.+-+-. -.+++.+|.+....||..| |.++++.++.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~----k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAA----KGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh----hheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 455666656666665555532221 1233445556666544432 4566677777777777777 777777777777
Q ss_pred cccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHC--C--CCC----CHHHHHHHHHHH
Q 007684 79 VNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFE-ALRLYDDARSN--G--ITL----SQHHYNVLLYVC 149 (593)
Q Consensus 79 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~--g--~~p----~~~ty~~ll~~~ 149 (593)
++.|...+.+++.+++. -|..|.-..|..+|..+++.++..+ |..++.++... | ++| |..-|-+-+..|
T Consensus 289 F~~ar~aalqil~EmKe--iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKE--IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred hHHHHHHHHHHHHHHHH--hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 77777776666632222 4445555557777777666665533 44444444322 2 222 234444556666
Q ss_pred HccCCCCCCCCCC--------------------------CcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684 150 SCKCGSESSENGD--------------------------RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK 203 (593)
Q Consensus 150 ~~~~~~~~~~~~~--------------------------~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 203 (593)
....+.+.+.+++ +..|.....+.....|+.|.-.-+-|+..+..-++++..-.
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~ 446 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA 446 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence 6554444333221 11233345667777888887777778889999999999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 007684 204 EDPEMAFDLVKQMKSFGI 221 (593)
Q Consensus 204 g~~~~A~~l~~~m~~~g~ 221 (593)
+.++-.-+++.+|+..|-
T Consensus 447 ~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 447 NRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred CcchhHHHHHHHHHHhhh
Confidence 999998888888887763
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.01 E-value=9.4e-09 Score=106.09 Aligned_cols=216 Identities=12% Similarity=0.081 Sum_probs=151.5
Q ss_pred cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHH
Q 007684 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKA 244 (593)
Q Consensus 166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A 244 (593)
..+|.++.|++.|++..+.. +--..+|++|..++-..|++.+|.+.+++... +.|+ ..+.+.|...|...|.+++|
T Consensus 297 yeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred eccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHH
Confidence 34589999999999988764 33457899999999999999999999998877 3465 56778899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhH
Q 007684 245 YEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKV 323 (593)
Q Consensus 245 ~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~ 323 (593)
..+|....+ +.|+... .+.|...|-..|+.++|...+++..+ +.|+. ...+.+.|+..
T Consensus 374 ~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f------Ada~~NmGnt~----------- 432 (966)
T KOG4626|consen 374 TRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF------ADALSNMGNTY----------- 432 (966)
T ss_pred HHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH------HHHHHhcchHH-----------
Confidence 999998774 4566544 88999999999999999999988865 44432 12222222111
Q ss_pred HHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccc----cccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 007684 324 REGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERL----VCIDIDPRETENFASSLSNLACQREVRSDFNKFQ 399 (593)
Q Consensus 324 ~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al----~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~ 399 (593)
+. -+....|+ +.|.+.|.-.+.++.+-+.|-..|.+.+|+..|+
T Consensus 433 -ke-------------------------------~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 433 -KE-------------------------------MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred -HH-------------------------------hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 00 01122232 3455778878889999999999999999999999
Q ss_pred HHHHhcCCcCeeeeccceecccCC---CCCh-hhHHHHHHHHHh
Q 007684 400 EWLGRHGPFDAVIDGANVGLVNQH---NFSF-YQLNTVVNRLRQ 439 (593)
Q Consensus 400 ~~l~~~~~~d~vidg~nv~~~~~~---~~~~-~~l~~vv~~l~~ 439 (593)
+-++-.+.| -=-+.|....-|- .-+. ...+++++..++
T Consensus 481 ~aLklkPDf--pdA~cNllh~lq~vcdw~D~d~~~~kl~sivrd 522 (966)
T KOG4626|consen 481 TALKLKPDF--PDAYCNLLHCLQIVCDWTDYDKRMKKLVSIVRD 522 (966)
T ss_pred HHHccCCCC--chhhhHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 998765543 2234444433322 1111 144555555555
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.91 E-value=3.4e-08 Score=105.91 Aligned_cols=99 Identities=17% Similarity=-0.022 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 208 MAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 208 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
-..++....+...-.|+..+|..++.+-..+|+++.|..++.+|++.|+..+..-|..||-+ .+...-+..+++-|.
T Consensus 187 pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq 263 (1088)
T KOG4318|consen 187 PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ 263 (1088)
T ss_pred hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH
Confidence 34444444443222588899999999999999999999999999999998888888888766 777788888889999
Q ss_pred HccCCCCHHHHHHHHHHHhcch
Q 007684 288 TLVRQVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 288 ~~~~~~~~~t~~~l~~~~~~~~ 309 (593)
+.|++|+.+|+..-.--+.+++
T Consensus 264 e~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 264 EKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HhcCCCCcchhHHHHHhhhcch
Confidence 9999999999865444443343
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.85 E-value=1.6e-07 Score=104.90 Aligned_cols=234 Identities=14% Similarity=0.010 Sum_probs=159.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
.++.+...+...|++++|+..|++..+. .|+ ...|..+-..+... |++++|.+.|++..+.
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~----------------g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLEL----------------GDPDKAEEDFDKALKL 394 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHh
Confidence 4777778888889999999999988776 444 34555555555554 5899999999988776
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL 263 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 263 (593)
. +-+..+|..+...+...|++++|...|++..+. .|+ ...+..+...+.+.|+.++|+..|++..... .-+...+
T Consensus 395 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~ 470 (615)
T TIGR00990 395 N-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVY 470 (615)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 5 456778888888899999999999999988774 354 5567777888888999999999999887532 2235668
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCC
Q 007684 264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSG 343 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~ 343 (593)
+.+..++...|++++|.+.|++..+....... ++..+..++..........+
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~-~~~~~~~l~~~a~~~~~~~~--------------------------- 522 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKP-MYMNVLPLINKALALFQWKQ--------------------------- 522 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCcccc-ccccHHHHHHHHHHHHHHhh---------------------------
Confidence 88888888999999999999888764322111 11111111110000000000
Q ss_pred ceEEEEecccCCCCcCcccccccc----cCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 344 KWRVERTQIDENGVCCSCNERLVC----IDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 344 ~~~v~~~~i~~~g~c~~~~~al~~----~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
...+|++. +.+.|.+...+..+...+...|+.++|++.|++.++..
T Consensus 523 ----------------~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 523 ----------------DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred ----------------hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 11111111 22455566678888899999999999999999987654
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.84 E-value=7.2e-09 Score=103.75 Aligned_cols=257 Identities=14% Similarity=0.132 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARR--ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNV 144 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 144 (593)
-.+...+.+.|++++|.+++.... ... ..+...+..+...+-..++.+.|...++++.+.+.. +...+..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~-------~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~ 83 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAA-------QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 344667889999999999995443 122 223334666666777789999999999999877543 5566666
Q ss_pred HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 007684 145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPP 223 (593)
Q Consensus 145 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p 223 (593)
++..+ .. ++.++|.++++...+.. ++...+..++..+...++++++.+++++..... ..+
T Consensus 84 l~~l~-~~----------------~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 144 (280)
T PF13429_consen 84 LIQLL-QD----------------GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD 144 (280)
T ss_dssp -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred ccccc-cc----------------ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence 76663 32 48899999988776543 566677888888999999999999999987532 335
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 007684 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIE 302 (593)
Q Consensus 224 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~ 302 (593)
+...|..+...+.+.|+.++|.+.+++..+.. |+ ....+.++..+...|+.+++.+++....+.. ..++..+..+.
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la 221 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALA 221 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 56778888888999999999999999988643 65 5568889999999999999888888887643 33344444555
Q ss_pred HHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHH
Q 007684 303 DWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENF 378 (593)
Q Consensus 303 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~ 378 (593)
..+...+.. ++|+..++ ..|.|...+
T Consensus 222 ~~~~~lg~~--------------------------------------------------~~Al~~~~~~~~~~p~d~~~~ 251 (280)
T PF13429_consen 222 AAYLQLGRY--------------------------------------------------EEALEYLEKALKLNPDDPLWL 251 (280)
T ss_dssp HHHHHHT-H--------------------------------------------------HHHHHHHHHHHHHSTT-HHHH
T ss_pred HHhcccccc--------------------------------------------------ccccccccccccccccccccc
Confidence 444333322 22333222 345677777
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHH
Q 007684 379 ASSLSNLACQREVRSDFNKFQEWLG 403 (593)
Q Consensus 379 ~~~i~~l~~~~~~~~a~~~f~~~l~ 403 (593)
......+...|+.++|..+.++...
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 7788888888888888888876543
No 22
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.80 E-value=3.1e-08 Score=102.31 Aligned_cols=307 Identities=9% Similarity=0.039 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCC-----------------------
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSE----------------------- 159 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~----------------------- 159 (593)
.++|..+-+.+-..|++++|+.+|+.|.+. +| .+..|.-+-.++..++..+.+-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 445777777777777777777777777765 33 2334444444444444433221
Q ss_pred -----------------------------CCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007684 160 -----------------------------NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210 (593)
Q Consensus 160 -----------------------------~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 210 (593)
.+-.-+-.+|+..+|+..|++..... +--.-+|-+|-..|...+.+|.|.
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHH
Confidence 00011123577888888888777543 222357888888888888888888
Q ss_pred HHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 211 DLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 211 ~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+.+... ..|+ ...|..|...|-.+|.+|.|++.|++..+ +.|+. ..|+.|..++-..|++.+|...+.+...
T Consensus 273 s~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 273 SCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 88877665 4566 57788888888899999999999998875 44554 4599999999999999999999998876
Q ss_pred ccCCCCH-HHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccc
Q 007684 289 LVRQVSE-STFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVC 367 (593)
Q Consensus 289 ~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~ 367 (593)
..|+. ...+-|-+.|...+.++.+-+ ...+++.-.-. --...+.+...+..-+..++|+..
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~-----ly~~al~v~p~-----------~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATR-----LYLKALEVFPE-----------FAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHH-----HHHHHHhhChh-----------hhhhhhhHHHHHHhcccHHHHHHH
Confidence 23322 222333333322222221111 11111110000 000123344445555666777665
Q ss_pred cC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhh
Q 007684 368 ID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM 440 (593)
Q Consensus 368 ~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~ 440 (593)
+. +.|.-...|..+.+.|-..|++.+|...|.+.+.-++.|-....++-+.|- +.+-+.++++.++..
T Consensus 411 YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k-----DsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 411 YKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK-----DSGNIPEAIQSYRTA 482 (966)
T ss_pred HHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh-----ccCCcHHHHHHHHHH
Confidence 44 788777888888899999999999999999888777666444433333332 224567777777663
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.79 E-value=6.5e-07 Score=85.91 Aligned_cols=188 Identities=15% Similarity=0.046 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
..+..+...+...|++++|...++++.+.. +.+...+..+...+... |++++|.+.|++..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~----------------~~~~~A~~~~~~al~~ 94 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQL----------------GELEKAEDSFRRALTL 94 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHhh
Confidence 346667777777777777777777776552 12344444444555554 4777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL 263 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 263 (593)
. +.+...+..+...+...|++++|.+.+++.......|. ...+..+...+...|+.++|...+++.....- .+...+
T Consensus 95 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 172 (234)
T TIGR02521 95 N-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESL 172 (234)
T ss_pred C-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHH
Confidence 4 34556667777777777777777777777765322222 34555566777777777777777777665321 234456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhh
Q 007684 264 SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAE 312 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~ 312 (593)
..+...+...|+.++|...+++..+. ...+...+..+...+...++.+
T Consensus 173 ~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 220 (234)
T TIGR02521 173 LELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVA 220 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHH
Confidence 66777777777777777777777664 2233444444444444444333
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.76 E-value=1.3e-06 Score=104.36 Aligned_cols=203 Identities=14% Similarity=0.066 Sum_probs=141.8
Q ss_pred HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHH
Q 007684 68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LSQHHYNVLL 146 (593)
Q Consensus 68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~ll 146 (593)
..-.++...|++++|+..|++.+ ...+.+...+..+...+.+.|++++|+..|++..+..-. ++...|..++
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL-------~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAV-------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 34556778999999999997776 334556677889999999999999999999998876321 1222232222
Q ss_pred HH--HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 147 YV--CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 147 ~~--~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
.. |.... ..-+.+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. |+
T Consensus 347 ~~~~~~~~~------~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~ 417 (1157)
T PRK11447 347 KVNRYWLLI------QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PG 417 (1157)
T ss_pred HhhhHHHHH------HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CC
Confidence 10 00000 00001112368999999999988765 4566778888899999999999999999887632 33
Q ss_pred -cccHH------------------------------------------HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H
Q 007684 225 -LRSYG------------------------------------------PALFGFCKLGNTDKAYEVDAHMGESGVVPE-E 260 (593)
Q Consensus 225 -~~ty~------------------------------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 260 (593)
...+. .+...+...|+.++|.+.|++..+.. |+ .
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSV 495 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence 22221 22334556789999999999887643 54 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 261 PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+..+...|.+.|+.++|...++++.+
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567788899999999999999999876
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.73 E-value=4.7e-06 Score=79.87 Aligned_cols=167 Identities=11% Similarity=-0.001 Sum_probs=132.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
.....+..+...+...|++++|.+.+++..+..- .+...+..+-..+... |++++|.+.|++.
T Consensus 63 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~----------------g~~~~A~~~~~~~ 125 (234)
T TIGR02521 63 DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQ----------------GKYEQAMQQFEQA 125 (234)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc----------------ccHHHHHHHHHHH
Confidence 3445688888999999999999999999887642 2444555555566554 6999999999999
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684 182 ITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259 (593)
Q Consensus 182 ~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 259 (593)
..... ......+..+...+...|++++|.+.+++..+.. |+ ...+..+...+...|+.++|.+.+++.... ...+
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~ 202 (234)
T TIGR02521 126 IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQT 202 (234)
T ss_pred HhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Confidence 87532 2344567778889999999999999999998743 43 567888899999999999999999998876 3345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 260 EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 260 ~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
...+..+...+...|+.++|..+.+.+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 203 AESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66677888888899999999998888765
No 26
>PF12854 PPR_1: PPR repeat
Probab=98.66 E-value=2.2e-08 Score=64.70 Aligned_cols=32 Identities=34% Similarity=0.735 Sum_probs=14.9
Q ss_pred CCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 220 GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 220 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.65 E-value=1.6e-06 Score=103.49 Aligned_cols=203 Identities=10% Similarity=-0.038 Sum_probs=128.0
Q ss_pred HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684 70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149 (593)
Q Consensus 70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~ 149 (593)
-..+.+.|++++|+..+.+.+ ...+.+...+..+...+.+.|++++|++.|+++.+.. +.+...+..+..++
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al-------~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQAR-------QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345778999999999997766 3334455667888999999999999999999998763 12344555554455
Q ss_pred HccCCCCCCCCC---------------------------CCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684 150 SCKCGSESSENG---------------------------DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202 (593)
Q Consensus 150 ~~~~~~~~~~~~---------------------------~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 202 (593)
...+ .+.+... ...+...|++++|.+.|++..+.. +-+...+..+...|.+
T Consensus 430 ~~~~-~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 RQQS-PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HhcC-HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3321 1111000 011223578888888888877655 3355667777778888
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHh
Q 007684 203 KEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP---------ELSALLKLSVD 272 (593)
Q Consensus 203 ~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~Ll~~~~~ 272 (593)
.|++++|...++++.+. .|+ ...+-.+...+.+.|+.++|.+.++.+......++.. .+..+...+..
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888888887652 243 2233333344556777778877777654322222211 12234556667
Q ss_pred cCCHHHHHHHHH
Q 007684 273 AKKVDKVYEILH 284 (593)
Q Consensus 273 ~g~~~~a~~~l~ 284 (593)
.|+.++|.++++
T Consensus 586 ~G~~~eA~~~l~ 597 (1157)
T PRK11447 586 SGKEAEAEALLR 597 (1157)
T ss_pred CCCHHHHHHHHH
Confidence 777777777766
No 28
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=3.7e-08 Score=63.64 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=32.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 217 (593)
+|+.||..|||+||.+||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4889999999999999999999999999999984
No 29
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.64 E-value=6.4e-07 Score=96.42 Aligned_cols=226 Identities=15% Similarity=0.140 Sum_probs=152.6
Q ss_pred cccCCCcccHHHHHHHHHHh----CCChhhHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCC
Q 007684 28 LMHQSNCHTYRSLLCWHMHS----FTKPITDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRES 102 (593)
Q Consensus 28 ~~~~pd~~~~~~ll~~~~~~----~~~~~~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 102 (593)
..++||-+||.++|..||.. +-.++.-|+-+.++.+... +.++.+...+++.+.+. .+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------------ep 81 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------------EP 81 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC-----------------CC
Confidence 45778889999999999844 3337888888888888888 88888888777776665 34
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHC-------CCCCCHHHHHHHHHHHHccCCCCCCC---------------
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDD-ARSN-------GITLSQHHYNVLLYVCSCKCGSESSE--------------- 159 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~-------g~~p~~~ty~~ll~~~~~~~~~~~~~--------------- 159 (593)
-.++|..|+.+|...||+.. ++..++ |... |+---...+-..+++|... .-+...
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~-lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHS-LPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCccc-chhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999876 333333 2211 2111111111111111111 000000
Q ss_pred CCC--Cc-ccccc-----------cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 160 NGD--RE-NDSNL-----------GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 160 ~~~--~~-~~~~g-----------~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
+++ -+ +...+ ...-..++.+..+.-.-.|+..+|.+++.....+|+.+.|..++.+|++.|+..+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 000 00 00011 11122233333322111599999999999999999999999999999999998888
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 275 (593)
.-|-++|-+ .++...++.+.+-|.+.|+.|+..|+..-+..+.++|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888999888 88999999999999999999999999888877777554
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.62 E-value=2.6e-06 Score=95.08 Aligned_cols=241 Identities=10% Similarity=-0.054 Sum_probs=163.6
Q ss_pred ChhhHHhhcC-Cccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 007684 50 KPITDIKQNR-FSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRL 126 (593)
Q Consensus 50 ~~~~~m~~~g-~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 126 (593)
..+....+.+ ..|+... ..+-..+...|++++|...+.+.+ ...+.....|..+...+...|++++|...
T Consensus 315 ~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal-------~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 315 RAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI-------ELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344444433 3344333 666777888999999999986665 33344455688888888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 007684 127 YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP 206 (593)
Q Consensus 127 ~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~ 206 (593)
|+++.+.. +-+...|..+-.++... |++++|.+.|++..+.. +.+...+..+..++.+.|++
T Consensus 388 ~~~al~~~-p~~~~~~~~lg~~~~~~----------------g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 388 FDKALKLN-SEDPDIYYHRAQLHFIK----------------GEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence 99887763 22456666666666665 58888999888887765 44567777888888888999
Q ss_pred HHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHH
Q 007684 207 EMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV-----PEEP-ELSALLKLSVDAKKVDKV 279 (593)
Q Consensus 207 ~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~Ll~~~~~~g~~~~a 279 (593)
++|+..+++..+. .|+ ...|+.+...+...|++++|.+.|+...+..-. .+.. .++..+..+...|++++|
T Consensus 450 ~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 450 ASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 9999888888763 354 567888888888888898898888887653211 1111 122233334446888888
Q ss_pred HHHHHHHHHccCCCCH-HHHHHHHHHHhcchhhhhccccch
Q 007684 280 YEILHRLRTLVRQVSE-STFKIIEDWFDSVDAAEIGVLNWD 319 (593)
Q Consensus 280 ~~~l~~m~~~~~~~~~-~t~~~l~~~~~~~~~~~~~~~~~d 319 (593)
.+++++..+. .|+. ..+..+...+...+..+.+...++
T Consensus 528 ~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 528 ENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888887663 2333 345666666766666665555444
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.62 E-value=5.1e-07 Score=90.34 Aligned_cols=186 Identities=13% Similarity=0.093 Sum_probs=70.8
Q ss_pred hcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcc
Q 007684 74 SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG-ITLSQHHYNVLLYVCSCK 152 (593)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~ll~~~~~~ 152 (593)
...+++++|..+..... +.. .....+...+..+.+.++++++.++++.+.+.. .+.+...|..+-..+.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~-------~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAY-------ERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccccccccccccccccc-------ccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 45566666665553333 111 122334555555666666666666666655332 223334444444444443
Q ss_pred CCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH
Q 007684 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232 (593)
Q Consensus 153 ~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 232 (593)
|+.++|.+.|++..+.. +-|....+.++..+...|+.+++.++++...+.. ..|...+..+.
T Consensus 160 ----------------G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la 221 (280)
T PF13429_consen 160 ----------------GDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALA 221 (280)
T ss_dssp ----------------CHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 46666666666665543 2245555556666666666666666665555432 23344555566
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 233 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
.+|...|+.++|..+|++..... +.|......+.+++...|+.++|.++.++.
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 66666666666666666655422 123444555556666666666666655544
No 32
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.58 E-value=3.6e-06 Score=96.06 Aligned_cols=339 Identities=10% Similarity=0.015 Sum_probs=195.9
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+..++.+.|++++|...+++.+ ...+.....+..+...+...|+.++|+..++++.+. .|+...+..+-
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al-------~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la 123 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKAL-------SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALA 123 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 677778899999999999986665 333445566778888888999999999999998877 44433355554
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH----------------
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF---------------- 210 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~---------------- 210 (593)
.++... |+.++|+..++++.+.. +-+...+..+..++...++.++|+
T Consensus 124 ~~l~~~----------------g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l 186 (765)
T PRK10049 124 YVYKRA----------------GRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDL 186 (765)
T ss_pred HHHHHC----------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHH
Confidence 566654 58888998888888765 335555555666666555555444
Q ss_pred ------------------------------HHHHHHHhC-CCCCCcc-cHH----HHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 211 ------------------------------DLVKQMKSF-GIPPKLR-SYG----PALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 211 ------------------------------~l~~~m~~~-g~~p~~~-ty~----~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
+.++.+.+. ...|+.. .+. ..+.++...|+.++|.+.|+.+.+.
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 344444331 1223321 111 1134556779999999999999876
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC---CHHHHHHHHHHHhcchhhhhccccchh-hhHHHhhhc
Q 007684 255 GVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV---SESTFKIIEDWFDSVDAAEIGVLNWDV-SKVREGIVR 329 (593)
Q Consensus 255 g~~-p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~---~~~t~~~l~~~~~~~~~~~~~~~~~d~-~~~~~~~~~ 329 (593)
+-. |+... ..+..+|...|++++|...|+++.+..... .......+...+...+ .+++ ......+..
T Consensus 267 ~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g-------~~~eA~~~l~~~~~ 338 (765)
T PRK10049 267 GQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE-------NYPGALTVTAHTIN 338 (765)
T ss_pred CCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc-------cHHHHHHHHHHHhh
Confidence 532 44322 225678899999999999999987632111 1122233333332222 2222 222222222
Q ss_pred CCCcc-ccc---ccccCCce-EEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 007684 330 GGGGW-HGQ---GWLGSGKW-RVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQE 400 (593)
Q Consensus 330 ~g~~~-~g~---~~~~~~~~-~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~ 400 (593)
.-... ... .-.+...| .+.......+..-+..++|++.++ ..|.+...+..+...+...|+.++|++.+++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11000 000 00000000 000011112223345566666655 5677777888888888899999999999999
Q ss_pred HHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhC
Q 007684 401 WLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMS 441 (593)
Q Consensus 401 ~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~ 441 (593)
.++..+.--.+.-..-..+...+ .+.+.+.+++.+.+..
T Consensus 419 al~l~Pd~~~l~~~~a~~al~~~--~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 419 AEVLEPRNINLEVEQAWTALDLQ--EWRQMDVLTDDVVARE 457 (765)
T ss_pred HHhhCCCChHHHHHHHHHHHHhC--CHHHHHHHHHHHHHhC
Confidence 88865432112222222333333 4566666666666533
No 33
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.54 E-value=1.5e-05 Score=91.91 Aligned_cols=169 Identities=11% Similarity=-0.014 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
....|..+..++.. ++..+|...|.+.... .|+......+...+... |++++|...|+++.
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~----------------Gr~eeAi~~~rka~ 536 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQV----------------EDYATALAAWQKIS 536 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHC----------------CCHHHHHHHHHHHh
Confidence 34557777777766 8899999988887766 46654322222233343 69999999999976
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 007684 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 261 (593)
.. +|+...+..+..++.+.|+.++|...+++..+.. |+. ..+..+.....+.|+.++|...+++..+. .|+..
T Consensus 537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~ 610 (987)
T PRK09782 537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSAN 610 (987)
T ss_pred cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHH
Confidence 54 4555667777888999999999999999998754 443 33333334444569999999999998854 46778
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684 262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298 (593)
Q Consensus 262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~ 298 (593)
.|..+..++.+.|+.++|...+++..+ ..|+...+
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a 645 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNY 645 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 899999999999999999999999877 34554433
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.51 E-value=5.4e-06 Score=87.23 Aligned_cols=252 Identities=8% Similarity=-0.036 Sum_probs=162.6
Q ss_pred CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHccC
Q 007684 76 KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL--YVCSCKC 153 (593)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll--~~~~~~~ 153 (593)
.|+++.|+....... .....|...|-.......+.|+++.|..++.++.+. .|+...+-.++ ..+...
T Consensus 97 eGd~~~A~k~l~~~~-------~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~- 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNA-------DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR- 166 (398)
T ss_pred CCCHHHHHHHHHHHH-------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC-
Confidence 588888775442111 111223333444445557889999999999998876 55654443222 245544
Q ss_pred CCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-------c
Q 007684 154 GSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-------R 226 (593)
Q Consensus 154 ~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ 226 (593)
|+.+.|.+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .
T Consensus 167 ---------------g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~ 230 (398)
T PRK10747 167 ---------------NENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQ 230 (398)
T ss_pred ---------------CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 58999999999998877 556778888999999999999999999999886654322 2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD 306 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~ 306 (593)
+|..++....+..+.+...++++.+.. ..+.+......+..++...|+.++|.+++++..+ ..+++... ..+.
T Consensus 231 a~~~l~~~~~~~~~~~~l~~~w~~lp~-~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~----~l~~ 303 (398)
T PRK10747 231 AWIGLMDQAMADQGSEGLKRWWKNQSR-KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV----LLIP 303 (398)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHhCCH-HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH----HHHh
Confidence 333444444455555666666666532 2234666788888899999999999999988876 34454222 1111
Q ss_pred cchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCccccccccc----CCCHHHHHHHHHHH
Q 007684 307 SVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCI----DIDPRETENFASSL 382 (593)
Q Consensus 307 ~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~----~l~~~~~~~~~~~i 382 (593)
... . +.-.++++.. ...|.+...+...-
T Consensus 304 ~l~---~---------------------------------------------~~~~~al~~~e~~lk~~P~~~~l~l~lg 335 (398)
T PRK10747 304 RLK---T---------------------------------------------NNPEQLEKVLRQQIKQHGDTPLLWSTLG 335 (398)
T ss_pred hcc---C---------------------------------------------CChHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 100 0 0111112211 23456666677777
Q ss_pred HHHhhhhhhHHhHHHHHHHHHhcCCc
Q 007684 383 SNLACQREVRSDFNKFQEWLGRHGPF 408 (593)
Q Consensus 383 ~~l~~~~~~~~a~~~f~~~l~~~~~~ 408 (593)
..+...+++++|.+.|++.++..+..
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 88888999999999999998875443
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.47 E-value=1.8e-05 Score=90.36 Aligned_cols=312 Identities=9% Similarity=0.016 Sum_probs=186.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~l 145 (593)
..+..++...|+.++|...+.+.+ ...+.... +..+..++...|+.++|+..++++.+. .|+. ..+..+
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l-------~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~l 156 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLV-------SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEY 156 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 777788999999999999997666 33444555 888888899999999999999999987 4443 333334
Q ss_pred HHHHHccCCCCCCCCCC---------------------------CcccccccH---HHHHHHHHHHHhC-CCCCCHH-HH
Q 007684 146 LYVCSCKCGSESSENGD---------------------------RENDSNLGL---KRGFEIFQQMITD-KVDPNEA-TF 193 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~---------------------------~~~~~~g~~---~~a~~l~~~M~~~-g~~p~~~-ty 193 (593)
..++...+..+.+-..+ ......+++ ++|++.++.+.+. ...|+.. .+
T Consensus 157 a~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~ 236 (765)
T PRK10049 157 VQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY 236 (765)
T ss_pred HHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH
Confidence 44444433222110000 011122334 6788888888753 2223221 11
Q ss_pred H----HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHH
Q 007684 194 T----SVARLAVAKEDPEMAFDLVKQMKSFGI-PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP---EEPELSA 265 (593)
Q Consensus 194 ~----~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ 265 (593)
. ..+.++...|+.++|...|+++.+.+- .|+..- -.+...|...|++++|..+|+++....-.. .......
T Consensus 237 ~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 237 QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 1 113345677899999999999887652 133211 124668888999999999999877533111 1344666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcc-----------CCCCHH---HHHHHHHHHhcchhhhhccccchhhhHHHhhhcCC
Q 007684 266 LLKLSVDAKKVDKVYEILHRLRTLV-----------RQVSES---TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGG 331 (593)
Q Consensus 266 Ll~~~~~~g~~~~a~~~l~~m~~~~-----------~~~~~~---t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g 331 (593)
|..++.+.|+.++|.++++++.+.. ..|+.. .+..+...+...+..+.+....+ +.+...-
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~-----~al~~~P 390 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR-----ELAYNAP 390 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH-----HHHHhCC
Confidence 7778889999999999999887642 223432 22333344444443333222211 1111110
Q ss_pred CcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 332 GGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 332 ~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
. +.. +...+...+..-+...+|++.++ +.|.+...+......+...|++++|+..++++++..
T Consensus 391 ~--n~~---------l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 391 G--NQG---------LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred C--CHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 0 000 00111112222223344444444 677777877788888999999999999999998864
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=1.6e-05 Score=76.89 Aligned_cols=221 Identities=13% Similarity=0.061 Sum_probs=163.7
Q ss_pred CCChhhHHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHH----HHHHHHHHHHcCCCHH
Q 007684 48 FTKPITDIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG----VLRHKLDMCSKRGDVF 121 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~ 121 (593)
+.++|-+|.+- .|.... -.|=+.|.+.|.++.|..+....+ .....+.. +.-.|-.-|..+|-++
T Consensus 54 AvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-------~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 54 AVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-------ESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHh-------cCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 66677777662 233333 666678899999999999986665 22222221 1445666688999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHH----HHHHHH
Q 007684 122 EALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEA----TFTSVA 197 (593)
Q Consensus 122 ~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~----ty~~li 197 (593)
.|..+|..+.+.|. .-....--|+..|-..+ +|++|+++-+++.+.+-.+... -|.-|.
T Consensus 125 RAE~~f~~L~de~e-fa~~AlqqLl~IYQ~tr----------------eW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 125 RAEDIFNQLVDEGE-FAEGALQQLLNIYQATR----------------EWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HHHHHHHHHhcchh-hhHHHHHHHHHHHHHhh----------------HHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 99999999988652 23344566788888764 8999999999988776444332 456667
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007684 198 RLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276 (593)
Q Consensus 198 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 276 (593)
..+....+.+.|..++++..+.+ |+ ++.--.+-..+...|++++|.+.++...+.+...-..+...|..+|...|+.
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 188 QQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 77777899999999999987744 44 4444456678889999999999999999888666667789999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHH
Q 007684 277 DKVYEILHRLRTLVRQVSES 296 (593)
Q Consensus 277 ~~a~~~l~~m~~~~~~~~~~ 296 (593)
++....+.++.+....++..
T Consensus 266 ~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 266 AEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHHHHccCCccHH
Confidence 99999999998865555543
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.43 E-value=1.4e-05 Score=92.31 Aligned_cols=195 Identities=9% Similarity=0.046 Sum_probs=136.3
Q ss_pred cccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH
Q 007684 62 ADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH 140 (593)
Q Consensus 62 ~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 140 (593)
|+... ..+...+.+.|++++|...++++. .. .+....+..+...+.+.|+.++|..++++..+.. |+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~-------~~-~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~ 576 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKIS-------LH-DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDN 576 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHh-------cc-CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccH
Confidence 44333 334444567788888877775433 11 1222334555667777888888888888877663 3322
Q ss_pred -HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007684 141 -HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219 (593)
Q Consensus 141 -ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 219 (593)
.+..+....... |++++|...|++..+.. |+...|..+..++.+.|+.++|...+++....
T Consensus 577 ~l~~~La~~l~~~----------------Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 577 ALYWWLHAQRYIP----------------GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHHHHHHhC----------------CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 221111122222 58999999999887654 57788888889999999999999999988874
Q ss_pred CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 220 GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 220 g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.|+ ...++.+..++...|+.++|.+++++..+.. |+ ...+..+..++...|+.++|...+++..+
T Consensus 639 --~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 639 --EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 365 4567777788889999999999999887643 43 45578888888999999999999998876
No 38
>PRK12370 invasion protein regulator; Provisional
Probab=98.42 E-value=4.1e-05 Score=84.23 Aligned_cols=180 Identities=10% Similarity=-0.019 Sum_probs=128.0
Q ss_pred ccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHH---------cCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 007684 80 NESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCS---------KRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVC 149 (593)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~ 149 (593)
++|...+++.+ ...+.....|..+-.++. ..+++++|...++++.+. .| +...+..+-.++
T Consensus 278 ~~A~~~~~~Al-------~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~ 348 (553)
T PRK12370 278 QQALKLLTQCV-------NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHHHH-------hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 45566664444 222333444555544333 335689999999998887 34 445555544455
Q ss_pred HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccH
Q 007684 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSY 228 (593)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty 228 (593)
... |++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+. .|+. ..+
T Consensus 349 ~~~----------------g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 349 TIH----------------SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred HHc----------------cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 554 59999999999998876 556678888999999999999999999999874 3553 233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..++..+...|+.++|.+.+++..+.. .|+. ..+..+..++...|+.++|...+.++..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 445556777899999999999987543 2443 3467777888899999999999988754
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.40 E-value=1.7e-05 Score=89.70 Aligned_cols=337 Identities=10% Similarity=0.015 Sum_probs=186.6
Q ss_pred HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684 70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149 (593)
Q Consensus 70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~ 149 (593)
...|...|++++|.+++++++ ...+.....+..++..+.+.++.++|++.++.+... .|+...|-.++.++
T Consensus 109 A~ly~~~gdyd~Aiely~kaL-------~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~ 179 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSL-------KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLN 179 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHH
Confidence 446666677777777776555 333444455556666677777777777777776655 44545553333333
Q ss_pred HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH--------------
Q 007684 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ-------------- 215 (593)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-------------- 215 (593)
... ++..+|++.++++.+.. +-+...+..++.++.+.|-...|.++.++
T Consensus 180 ~~~----------------~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~ 242 (822)
T PRK14574 180 RAT----------------DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLE 242 (822)
T ss_pred Hhc----------------chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHH
Confidence 322 35556999999998876 55666777777777776665555444432
Q ss_pred ----------------------------------HHh-CCCCCC-----cccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684 216 ----------------------------------MKS-FGIPPK-----LRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255 (593)
Q Consensus 216 ----------------------------------m~~-~g~~p~-----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 255 (593)
+.. -+-.|. .+..-..+-++...|+.+++.+.|+.|...|
T Consensus 243 ~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 243 RDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 111 111132 2233456788889999999999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-----CCCHHHHHHHHHHHhcchhhhhccccch-hhhHHHhhhc
Q 007684 256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR-----QVSESTFKIIEDWFDSVDAAEIGVLNWD-VSKVREGIVR 329 (593)
Q Consensus 256 ~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~-----~~~~~t~~~l~~~~~~~~~~~~~~~~~d-~~~~~~~~~~ 329 (593)
.+.-...-.++.++|...+..++|..+++.+....- .++......|.-.+-.. +.++ +..+.+.+.+
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~-------e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES-------EQLDKAYQFAVNYSE 395 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc-------ccHHHHHHHHHHHHh
Confidence 764555788899999999999999999999966331 11222123333333222 2222 2344444443
Q ss_pred CCCcc-----cccccccCCceEEEE-ecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 007684 330 GGGGW-----HGQGWLGSGKWRVER-TQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQ 399 (593)
Q Consensus 330 ~g~~~-----~g~~~~~~~~~~v~~-~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~ 399 (593)
.- ++ .+.+-.+..+|.-.. ..+..+..-+...+|.+.++ ..|.+......+-..+...|...+|++.++
T Consensus 396 ~~-p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 396 QT-PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cC-CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11 10 000001223332110 11111222334445555444 455555555555556666666666666665
Q ss_pred HHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhCC
Q 007684 400 EWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSP 442 (593)
Q Consensus 400 ~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~~ 442 (593)
..+...+..-.+--|.-..+..++ .+.+.+.+++.+..+.+
T Consensus 475 ~a~~l~P~~~~~~~~~~~~al~l~--e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 475 AVESLAPRSLILERAQAETAMALQ--EWHQMELLTDDVISRSP 515 (822)
T ss_pred HHhhhCCccHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhhCC
Confidence 554442221111123333333333 45677777777766554
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.38 E-value=2.2e-05 Score=82.98 Aligned_cols=189 Identities=11% Similarity=0.022 Sum_probs=129.4
Q ss_pred hcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHc
Q 007684 74 SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH--HYNVLLYVCSC 151 (593)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--ty~~ll~~~~~ 151 (593)
...|+++.|+....... ...+.|...+-....++.+.|+.+.|..++.+..+. .|+.. .--.....+..
T Consensus 95 ~~~g~~~~A~~~l~~~~-------~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNA-------DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLA 165 (409)
T ss_pred HhCCCHHHHHHHHHHHh-------hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHH
Confidence 35788888888874333 223334444555566688889999999999998765 34432 22222334455
Q ss_pred cCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH-H
Q 007684 152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG-P 230 (593)
Q Consensus 152 ~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~-~ 230 (593)
. |+.+.|.+.++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++ ++...+. .
T Consensus 166 ~----------------~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~-~~~~~~~~l 227 (409)
T TIGR00540 166 Q----------------NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL-FDDEEFADL 227 (409)
T ss_pred C----------------CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 4 58999999999999887 55677888999999999999999999999998876 3333332 1
Q ss_pred ---HHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 231 ---ALFGFCKLGNTDKAYEVDAHMGESG---VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 231 ---li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
...++...+..+++.+.+..+.... .+.+...+..+...+...|+.++|.+++++..+.
T Consensus 228 ~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 228 EQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 1122233333333344554444322 1136777888999999999999999999998773
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.36 E-value=4.7e-05 Score=80.13 Aligned_cols=233 Identities=9% Similarity=-0.001 Sum_probs=161.2
Q ss_pred CCChhhHHhhcCCccccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHH
Q 007684 48 FTKPITDIKQNRFSADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEAL 124 (593)
Q Consensus 48 ~~~~~~~m~~~g~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 124 (593)
+...+..+. ...|+... -.....+...|+++.|...++... +..+.+..++..+...|.+.|++++|.
T Consensus 137 A~~~l~~A~--~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~-------~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 137 ANQHLERAA--ELADNDQLPVEITRVRIQLARNENHAARHGVDKLL-------EVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHHHHHH--hcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 334444443 24455543 233667888999999999886655 555667778999999999999999999
Q ss_pred HHHHHHHHCCCCCCH-------HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684 125 RLYDDARSNGITLSQ-------HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVA 197 (593)
Q Consensus 125 ~l~~~m~~~g~~p~~-------~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li 197 (593)
+++..+.+.+..++. .+|..++..-... .+.+...++++.+-.. .+.+......+.
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~----------------~~~~~l~~~w~~lp~~-~~~~~~~~~~~A 270 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD----------------QGSEGLKRWWKNQSRK-TRHQVALQVAMA 270 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh----------------cCHHHHHHHHHhCCHH-HhCCHHHHHHHH
Confidence 999999988654222 1222223222221 1344455555554322 245777888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCH
Q 007684 198 RLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKV 276 (593)
Q Consensus 198 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~ 276 (593)
.++...|+.++|.+++++..+. .|+. --.++.+.+..++.+++.+..+.+.+.. |+... +.++-..+.+.|++
T Consensus 271 ~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~ 344 (398)
T PRK10747 271 EHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEW 344 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999888773 3443 1224555556789999999999888543 55544 77888899999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhc
Q 007684 277 DKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIG 314 (593)
Q Consensus 277 ~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~ 314 (593)
++|.+.|+.+.+ ..|+..++..+...+...+..+.+
T Consensus 345 ~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 345 QEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999977 568888888888888766654433
No 42
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.35 E-value=2.7e-05 Score=82.48 Aligned_cols=205 Identities=13% Similarity=0.056 Sum_probs=142.9
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHC---CC-CCCHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGV--LRHKLDMCSKRGDVFEALRLYDDARSN---GI-TLSQH 140 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~---g~-~p~~~ 140 (593)
..|...|...|+++.|+..+.+.+.. ..+..+...+... .+.+-..|...+++++|..+|+++... .. .-+..
T Consensus 203 ~~La~~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 203 RNLAEMYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 67889999999999999999888833 3333343333322 666777899999999999999998744 11 11232
Q ss_pred ---HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-----CCC-CCCHH-HHHHHHHHHHhcCChHHHH
Q 007684 141 ---HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-----DKV-DPNEA-TFTSVARLAVAKEDPEMAF 210 (593)
Q Consensus 141 ---ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-----~g~-~p~~~-ty~~li~~~~~~g~~~~A~ 210 (593)
+++.|-.+|.+. |++++|.+.++...+ .|. .|... -++.++..|+..+++++|.
T Consensus 282 va~~l~nLa~ly~~~----------------GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQ----------------GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK 345 (508)
T ss_pred HHHHHHHHHHHHhcc----------------CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence 333333366665 577776666554322 222 23333 5778888999999999999
Q ss_pred HHHHHHHh---CCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhC----C--CCCC-HHHHHHHHHHHHhcCCH
Q 007684 211 DLVKQMKS---FGIPPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGES----G--VVPE-EPELSALLKLSVDAKKV 276 (593)
Q Consensus 211 ~l~~~m~~---~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g--~~p~-~~t~~~Ll~~~~~~g~~ 276 (593)
.+++...+ .-..++ ..+|+.|-..|-..|++++|++++++.... + ..+. -..++.|-..|.+.+..
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~ 425 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY 425 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc
Confidence 99987643 112222 258999999999999999999999987632 1 2233 34478888889888899
Q ss_pred HHHHHHHHHHHH
Q 007684 277 DKVYEILHRLRT 288 (593)
Q Consensus 277 ~~a~~~l~~m~~ 288 (593)
++|.++|.+...
T Consensus 426 ~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 426 EEAEQLFEEAKD 437 (508)
T ss_pred chHHHHHHHHHH
Confidence 999988887644
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=98.31 E-value=3.6e-05 Score=84.64 Aligned_cols=180 Identities=6% Similarity=-0.037 Sum_probs=130.2
Q ss_pred CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCC
Q 007684 78 TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSE 156 (593)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~ 156 (593)
+.++|...+++.+ ...+.+...+..+-..+...|++++|...|+++.+. .|+ ...+..+-.++...
T Consensus 319 ~~~~A~~~~~~Al-------~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~---- 385 (553)
T PRK12370 319 AMIKAKEHAIKAT-------ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMA---- 385 (553)
T ss_pred HHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC----
Confidence 3566776665554 444556667888888899999999999999999887 455 44555554566665
Q ss_pred CCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHH
Q 007684 157 SSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGF 235 (593)
Q Consensus 157 ~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~ 235 (593)
|+.++|.+.+++..+... .+...+..++..+...|++++|...+++..+.. .|+ ...+..+..+|
T Consensus 386 ------------G~~~eAi~~~~~Al~l~P-~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l 451 (553)
T PRK12370 386 ------------GQLEEALQTINECLKLDP-TRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFL 451 (553)
T ss_pred ------------CCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHH
Confidence 699999999999988762 233344445556777899999999999987643 254 34567788888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 236 CKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 236 ~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
...|+.++|.+.++++... .|+... .+.|...|+..| +++...++.+.+
T Consensus 452 ~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9999999999999987543 344333 555666777777 588887777765
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.31 E-value=2.1e-05 Score=83.40 Aligned_cols=205 Identities=12% Similarity=0.100 Sum_probs=149.8
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC-CCC
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG--VLRHKLDMCSKRGDVFEALRLYDDARSN-----GI-TLS 138 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~ 138 (593)
+.+-..|...+++++|..+|...++.... -.|...|.. +++.|-.+|++.|++++|..++++..+. |. .|.
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~-~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREE-VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 66778999999999999999988844433 333344433 3899999999999999999999886533 21 233
Q ss_pred HHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHhcCChHHHH
Q 007684 139 QHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT---DKVDPN----EATFTSVARLAVAKEDPEMAF 210 (593)
Q Consensus 139 ~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~---~g~~p~----~~ty~~li~~~~~~g~~~~A~ 210 (593)
+.+..+-+. .|... +.+++|..+++...+ .-..++ ..+|+.|...|-..|++++|.
T Consensus 324 v~~~l~~~~~~~~~~----------------~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 324 VAAQLSELAAILQSM----------------NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred HHHHHHHHHHHHHHh----------------cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 333333333 55554 488899888886543 112232 358999999999999999999
Q ss_pred HHHHHHHhC------CCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHhcCCHH
Q 007684 211 DLVKQMKSF------GIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE----SGV-VPE-EPELSALLKLSVDAKKVD 277 (593)
Q Consensus 211 ~l~~~m~~~------g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~-~~t~~~Ll~~~~~~g~~~ 277 (593)
+++++..+. +..+. -..++.|-..|-+.+...+|.++|.+-.. .|. .|+ ..+|..|..+|...|+++
T Consensus 388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 999998531 11222 35678889999999999999999988652 232 234 355999999999999999
Q ss_pred HHHHHHHHHHH
Q 007684 278 KVYEILHRLRT 288 (593)
Q Consensus 278 ~a~~~l~~m~~ 288 (593)
+|.++.+....
T Consensus 468 ~a~~~~~~~~~ 478 (508)
T KOG1840|consen 468 AAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHH
Confidence 99999888753
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.30 E-value=9.2e-05 Score=78.31 Aligned_cols=226 Identities=11% Similarity=0.036 Sum_probs=152.9
Q ss_pred HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-H
Q 007684 69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-Y 147 (593)
Q Consensus 69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll-~ 147 (593)
....+...|+++.|...++... ...+.+..++..+...+.+.|++++|.+++..+.+.+.. +...+..+- .
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~-------~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~ 230 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLL-------EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQK 230 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 4666777888888888775555 334555567888888888888888888888888887643 333332221 1
Q ss_pred HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 148 VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV---DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~---~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
++... ...+..+++.+.+..+..... +.+...+..+...+...|+.++|.+++++..+.. |+
T Consensus 231 a~~~~-------------l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd 295 (409)
T TIGR00540 231 AEIGL-------------LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GD 295 (409)
T ss_pred HHHHH-------------HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC
Confidence 11110 000122333445555554431 1378889999999999999999999999998743 55
Q ss_pred ccc---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684 225 LRS---YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP---ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298 (593)
Q Consensus 225 ~~t---y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~ 298 (593)
... ...........++.+++.+.++...+. .|+.. ...++...+.+.|++++|.+.|++.......|+...+
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 432 122223334467888899998887753 34444 4668888999999999999999976666678999988
Q ss_pred HHHHHHHhcchhhhhccccch
Q 007684 299 KIIEDWFDSVDAAEIGVLNWD 319 (593)
Q Consensus 299 ~~l~~~~~~~~~~~~~~~~~d 319 (593)
..+...+...+..+.+...|.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHH
Confidence 888888877776665555555
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=2.5e-05 Score=75.56 Aligned_cols=226 Identities=13% Similarity=0.109 Sum_probs=159.8
Q ss_pred Cccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 007684 60 FSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL 137 (593)
Q Consensus 60 ~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 137 (593)
++-+-.+ |+|+ +.+.++|...|.+++ ........+--+|-+.|-+.|.++.|+++...+.+. |
T Consensus 35 lsr~Yv~GlNfLL-----s~Q~dKAvdlF~e~l-------~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---p 99 (389)
T COG2956 35 LSRDYVKGLNFLL-----SNQPDKAVDLFLEML-------QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---P 99 (389)
T ss_pred ccHHHHhHHHHHh-----hcCcchHHHHHHHHH-------hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---C
Confidence 5555555 7666 578899999998887 333333444667888899999999999999998875 3
Q ss_pred CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684 138 SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 138 ~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 217 (593)
|..----++..+.-+ ..|...|-+++|.++|..+...| ..-+.+.--|+..|-...+|++|.++-+++.
T Consensus 100 dlT~~qr~lAl~qL~----------~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 100 DLTFEQRLLALQQLG----------RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred CCchHHHHHHHHHHH----------HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 332222222222211 12344579999999999999866 5566778889999999999999999999998
Q ss_pred hCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684 218 SFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293 (593)
Q Consensus 218 ~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~ 293 (593)
+.+-.+.. .-|--+...+....+.++|.+++.+..+.+-+ .+..=-.+-+.....|++++|.+.++...+.....
T Consensus 169 k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 169 KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 85543322 12333333444467899999999988764421 22223345667889999999999999999877777
Q ss_pred CHHHHHHHHHHHhcchhhh
Q 007684 294 SESTFKIIEDWFDSVDAAE 312 (593)
Q Consensus 294 ~~~t~~~l~~~~~~~~~~~ 312 (593)
-+.+...+...|...+...
T Consensus 248 l~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHHHHHHHHHHHHhCCHH
Confidence 7778888888887666443
No 47
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.27 E-value=7.4e-05 Score=84.60 Aligned_cols=291 Identities=8% Similarity=0.026 Sum_probs=176.0
Q ss_pred HHhcCCCcccCCCCcccccchHHhhhhcCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---H
Q 007684 72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL---Y 147 (593)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll---~ 147 (593)
...+.|+++.|...+.+.+ ...+.. ..++ .++..+...|+.++|+.++++.. .|+...+..++ .
T Consensus 43 i~~r~Gd~~~Al~~L~qaL-------~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEES-------KAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHHhCCCHHHHHHHHHHHH-------hhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 4778888888888886666 222222 2344 78888888899999999988877 33333333333 3
Q ss_pred HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 007684 148 VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227 (593)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 227 (593)
.|... |++++|+++|+++.+.. +-|...+..++..+...++.++|++.++++... .|+...
T Consensus 111 ly~~~----------------gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 111 AYRNE----------------KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred HHHHc----------------CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 55554 58899999999988776 445677778888888899999999999888763 466666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------------
Q 007684 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLR------------------- 287 (593)
Q Consensus 228 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~------------------- 287 (593)
|-.++..+...++..+|++.++++.+.. |+ ...+..+..++.+.|-...|.++..+-.
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHH
Confidence 6444334434556656888888888654 54 4446777777778777766665554311
Q ss_pred -HccCCCC---HHHHHHHHHHHhcchhhhh-------------------------ccccchhhhHHHhhhcCCCcccccc
Q 007684 288 -TLVRQVS---ESTFKIIEDWFDSVDAAEI-------------------------GVLNWDVSKVREGIVRGGGGWHGQG 338 (593)
Q Consensus 288 -~~~~~~~---~~t~~~l~~~~~~~~~~~~-------------------------~~~~~d~~~~~~~~~~~g~~~~g~~ 338 (593)
+....++ .+-|..+-..+.....+.. ..+.-++....+.+...|.+++.+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y- 328 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDY- 328 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHH-
Confidence 0000011 1112222222222221111 011111233344455555433322
Q ss_pred cccCCceEEEEecccCCCCcCcccccccccC--C--------CHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHh
Q 007684 339 WLGSGKWRVERTQIDENGVCCSCNERLVCID--I--------DPRETENFASSLSNLACQREVRSDFNKFQEWLGR 404 (593)
Q Consensus 339 ~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~--l--------~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~ 404 (593)
+.....+.|-.-+.-.+|+..+. + .+.+......++-+|...++.++|..+.+++.+.
T Consensus 329 --------~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 329 --------ARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred --------HHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 22334444444444555555555 1 1234444578889999999999999999999874
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.17 E-value=0.00082 Score=67.71 Aligned_cols=226 Identities=10% Similarity=0.020 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHH
Q 007684 118 GDVFEALRLYDDARSNG-ITLSQ--HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFT 194 (593)
Q Consensus 118 g~~~~A~~l~~~m~~~g-~~p~~--~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~ 194 (593)
+..+.++.-+.++.+.. ..|+. ..|..+-.++... |+.++|...|++..+.. +.+...|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~----------------g~~~~A~~~~~~Al~l~-P~~~~a~~ 102 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL----------------GLRALARNDFSQALALR-PDMADAYN 102 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 35666777777766542 23322 2333333345554 68999999999988876 55678999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~ 273 (593)
.+...+...|++++|.+.|++..+ +.|+ ..+|..+..++...|+.++|.+.|+...+. .|+..........+...
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~ 178 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESK 178 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHcc
Confidence 999999999999999999999987 4466 467788888899999999999999998764 35544322223334456
Q ss_pred CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEeccc
Q 007684 274 KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQID 353 (593)
Q Consensus 274 g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~ 353 (593)
++.++|...+.+..... .++... ..+...+ .+.++.....+.+.+.
T Consensus 179 ~~~~~A~~~l~~~~~~~-~~~~~~-~~~~~~~---------lg~~~~~~~~~~~~~~----------------------- 224 (296)
T PRK11189 179 LDPKQAKENLKQRYEKL-DKEQWG-WNIVEFY---------LGKISEETLMERLKAG----------------------- 224 (296)
T ss_pred CCHHHHHHHHHHHHhhC-CccccH-HHHHHHH---------ccCCCHHHHHHHHHhc-----------------------
Confidence 78999999997654322 222111 1122111 0011111111111100
Q ss_pred CCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcC
Q 007684 354 ENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFD 409 (593)
Q Consensus 354 ~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d 409 (593)
.-....+.|...+.|..+...+...|+.++|+..|++.++.. |||
T Consensus 225 ----------~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 225 ----------ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred ----------CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 001112344566788899999999999999999999988644 444
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=0.0002 Score=69.51 Aligned_cols=229 Identities=13% Similarity=0.094 Sum_probs=173.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
-+.+-.+|.+-|.+.+|.+.++.-.+. .|-+.||-.|-+.|.+-. ..+.|+.+|.+-...-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~rid----------------QP~~AL~~~~~gld~f- 286 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRID----------------QPERALLVIGEGLDSF- 286 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhc----------------cHHHHHHHHhhhhhcC-
Confidence 355667788899999999999988777 667778887888998874 8999999999877653
Q ss_pred CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 187 DPNEAT-FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265 (593)
Q Consensus 187 ~p~~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 265 (593)
|-.+| ..-+.+.+-..++.++|.++++...+..- .++....++..+|...++++.|+..|+.+...|+. +...|+.
T Consensus 287 -P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~N 363 (478)
T KOG1129|consen 287 -PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCN 363 (478)
T ss_pred -CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhh
Confidence 55555 45688889999999999999999987432 45677888889999999999999999999999985 5667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCce
Q 007684 266 LLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW 345 (593)
Q Consensus 266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~ 345 (593)
+--+|.-.+++|-++.-|.+....-.+|+... --||
T Consensus 364 igLCC~yaqQ~D~~L~sf~RAlstat~~~~aa----DvWY---------------------------------------- 399 (478)
T KOG1129|consen 364 IGLCCLYAQQIDLVLPSFQRALSTATQPGQAA----DVWY---------------------------------------- 399 (478)
T ss_pred HHHHHHhhcchhhhHHHHHHHHhhccCcchhh----hhhh----------------------------------------
Confidence 88888899999999999998877555554321 0122
Q ss_pred EEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 346 RVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 346 ~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
++....|+. |...-|-++|+ -++.+.+.++.+-.--.+.|++++|..+++...+..
T Consensus 400 Nlg~vaV~i----GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 400 NLGFVAVTI----GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred ccceeEEec----cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 011111111 22333444455 345677888888888889999999999999876543
No 50
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5.1e-06 Score=53.89 Aligned_cols=33 Identities=33% Similarity=0.652 Sum_probs=23.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 259 (593)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777665
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0012 Score=67.07 Aligned_cols=209 Identities=10% Similarity=0.042 Sum_probs=141.6
Q ss_pred hHHhhcCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcC-CCCHHHHHH---------------------
Q 007684 53 TDIKQNRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARR-ESPEGVLRH--------------------- 109 (593)
Q Consensus 53 ~~m~~~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------- 109 (593)
......|++..... +....+.-...+++.|++.|+.+..+ ... ..+-.+|..
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-----DPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i 325 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-----DPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI 325 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-----CCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh
Confidence 34556677766666 66666677788899999998766621 111 111222333
Q ss_pred ----------HHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHH
Q 007684 110 ----------KLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178 (593)
Q Consensus 110 ----------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~ 178 (593)
+-+-|+-.++.++|..+|+...+. .|.. ..|+.+=+-|...+ +...|++-|
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmK----------------Nt~AAi~sY 387 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMK----------------NTHAAIESY 387 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhc----------------ccHHHHHHH
Confidence 334455556777888888877766 3333 34444444777664 667788888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257 (593)
Q Consensus 179 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 257 (593)
+...+-. +.|--.|-.|-.+|.-.+...-|+-.|++..+ +.|+ .+.|.+|..+|.+.+++++|+.-|......|-.
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 8777666 66777788888888888888888888887766 3454 678888888888888888888888877765533
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 258 PEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 258 p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+...|..|.+.|-+-++.++|..++.+-.+
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456678888888888888888777776554
No 52
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=4.4e-05 Score=80.61 Aligned_cols=225 Identities=13% Similarity=0.026 Sum_probs=145.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNG--ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
....+...+-.+|-.-+++++|.++|+.+++.. ..-+...|.+.|-..-+. -++..+.
T Consensus 351 nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--------------------v~Ls~La 410 (638)
T KOG1126|consen 351 NTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--------------------VALSYLA 410 (638)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--------------------HHHHHHH
Confidence 334667777888888899999999999888662 122567777776544331 2233332
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (593)
+-.-.--+-...||.++-+.|+-.++.+.|++.|++..+ +.| ...+|+.+-.-+....++|+|+.-|+..+ ..
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~ 484 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GV 484 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cC
Confidence 211111134557888888888888888889888888877 446 36788877788888888888888888765 34
Q ss_pred CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCccc
Q 007684 259 EEPELSA---LLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWH 335 (593)
Q Consensus 259 ~~~t~~~---Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~ 335 (593)
|...|++ |.-.|.+.++.+.|+-.|++..+ +.|.... |+..+
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsv---i~~~~------------------------------ 529 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSV---ILCHI------------------------------ 529 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchh---HHhhh------------------------------
Confidence 5555655 45567788888888888888766 3443321 22111
Q ss_pred ccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 007684 336 GQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLG 403 (593)
Q Consensus 336 g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~ 403 (593)
...+.+++.-++|++.++ ++|.+.-.--.....+...++.++|+..+++..+
T Consensus 530 ----------------g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 530 ----------------GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred ----------------hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 011123344455555555 5666555555566666677777788888877554
No 53
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=9.6e-06 Score=52.32 Aligned_cols=32 Identities=31% Similarity=0.625 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 223 (593)
||+++|++|++.|+++.|+++|++|++.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 54
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.00 E-value=7.1e-05 Score=61.48 Aligned_cols=88 Identities=22% Similarity=0.311 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGI-TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
--..|..|...+++.....+|+.+++.|+ .|++.+|+.+|.+-.+.. +|...-.+++-..+.+|++|...+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~--------lD~~~ie~kl~~LLtvYqDiL~~~ 99 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRE--------LDSEDIENKLTNLLTVYQDILSNK 99 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHcc--------ccchhHHHHHHHHHHHHHHHHHhc
Confidence 34566777778999999999999999999 999999999999666643 222223457788999999999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 007684 186 VDPNEATFTSVARLAVA 202 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~ 202 (593)
++|+..||+.++..+.+
T Consensus 100 lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 100 LKPNDETYNIVLGSLLK 116 (120)
T ss_pred cCCcHHHHHHHHHHHHH
Confidence 99999999999998765
No 55
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.00 E-value=1.1e-05 Score=52.33 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
.|||++|++|++.|++++|.++|++|++.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 56
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.99 E-value=0.0014 Score=63.45 Aligned_cols=169 Identities=14% Similarity=0.052 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 176 (593)
......+-.+...+.+.|++++|...|+++.+. .|+. .++..+-.++... |++++|.+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~----------------~~~~~A~~ 91 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKS----------------GDYAEAIA 91 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhc----------------CCHHHHHH
Confidence 344556777888899999999999999998876 3332 2334444455554 59999999
Q ss_pred HHHHHHhCCCCCCH--HHHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCcc-cH-----------------
Q 007684 177 IFQQMITDKVDPNE--ATFTSVARLAVAK--------EDPEMAFDLVKQMKSFGIPPKLR-SY----------------- 228 (593)
Q Consensus 177 l~~~M~~~g~~p~~--~ty~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-ty----------------- 228 (593)
.|+++.+..-.... .++..+..++... |+.++|.+.++++.+.. |+.. .+
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999875422111 2444555555554 78899999999997642 4432 11
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 229 GPALFGFCKLGNTDKAYEVDAHMGESGV-VP-EEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
-.+...|.+.|+.++|...+++.....- .| ....+..+..++.+.|+.++|..+++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1345667889999999999999885421 23 3466889999999999999999999988763
No 57
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=0.0002 Score=75.72 Aligned_cols=257 Identities=13% Similarity=0.043 Sum_probs=178.4
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCC-CCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE-SPEGVLRHKLDMCSKRG-DVFEALRLYDDARSNGITLSQHHYNV 144 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~ 144 (593)
.-+-.+|...+.+++|+.+|+ ..++++... ...+.|.+.+=-+-+.= ---.|..+.+.+ +-.+.+|.+
T Consensus 357 ~q~GrayFEl~~Y~~a~~~F~-----~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca 426 (638)
T KOG1126|consen 357 SQLGRAYFELIEYDQAERIFS-----LVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCA 426 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHH
Confidence 777789999999999999994 333333333 33445777665443311 111223333322 335689998
Q ss_pred HHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 145 LLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 145 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
+=++|+-+ ++.+.|++.|++..+.. +-...+|+.+-.-+.....+|.|...|+.... .|
T Consensus 427 ~GNcfSLQ----------------kdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~ 485 (638)
T KOG1126|consen 427 LGNCFSLQ----------------KDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD 485 (638)
T ss_pred hcchhhhh----------------hHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence 88888886 49999999999988765 34778999999999999999999999986654 67
Q ss_pred cccHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 007684 225 LRSYGPA---LFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300 (593)
Q Consensus 225 ~~ty~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~ 300 (593)
.+.||++ ...|.|.++.+.|+-.|+...+.+ | +.+....+...+-+.|+.|+|+.++++.......-...-|..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 7788764 456789999999999999987544 4 445577778888899999999999999876333222223322
Q ss_pred HHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCcccccccccC----CCHHHHH
Q 007684 301 IEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNERLVCID----IDPRETE 376 (593)
Q Consensus 301 l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~ 376 (593)
..-.|+.. +-.+|++.++ +.|.|..
T Consensus 564 ~~il~~~~---------------------------------------------------~~~eal~~LEeLk~~vP~es~ 592 (638)
T KOG1126|consen 564 ASILFSLG---------------------------------------------------RYVEALQELEELKELVPQESS 592 (638)
T ss_pred HHHHHhhc---------------------------------------------------chHHHHHHHHHHHHhCcchHH
Confidence 22222111 1112222222 5677888
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684 377 NFASSLSNLACQREVRSDFNKFQEWLGRHGP 407 (593)
Q Consensus 377 ~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~ 407 (593)
.|..+...|.+.|+.+.|+..|--+.+-.++
T Consensus 593 v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 593 VFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 8888999999999999999999887775443
No 58
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.98 E-value=1.2e-05 Score=51.83 Aligned_cols=34 Identities=32% Similarity=0.509 Sum_probs=31.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (593)
+.+|+.+|.+|++.|+++.|+++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 0489999999999999999999999999999988
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.88 E-value=0.0017 Score=65.49 Aligned_cols=191 Identities=12% Similarity=0.011 Sum_probs=131.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~l 145 (593)
..+-..|...|+.++|...|.+.+ ...+.....|+.+-..+...|++++|...|+...+. .|+ ..+|..+
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al-------~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~l 138 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQAL-------ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-------HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 444456888999999999886666 444556778999999999999999999999999876 454 4455544
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
-.++... |+.++|.+.|+...+.. |+..........+...++.++|.+.+++.... ..|+.
T Consensus 139 g~~l~~~----------------g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~ 199 (296)
T PRK11189 139 GIALYYG----------------GRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQ 199 (296)
T ss_pred HHHHHHC----------------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccc
Confidence 4455554 59999999999988764 43332222233345678899999999776532 22332
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhC---CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGES---GV--VPE-EPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
|. ....+...|+.+++ +.++.+.+. .. .|+ ...|..+...+.+.|+.++|...|++..+.
T Consensus 200 --~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 200 --WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred --cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 22 22333446666554 355555421 11 122 246888999999999999999999999874
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.84 E-value=0.004 Score=58.07 Aligned_cols=178 Identities=14% Similarity=-0.023 Sum_probs=139.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
.--|--.|...|+...|..-+++..+. .|+. .+|.++-..|... |..+.|.+.|++.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~----------------Ge~~~A~e~YrkAlsl~ 99 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKL----------------GENDLADESYRKALSLA 99 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHc----------------CChhhHHHHHHHHHhcC
Confidence 556677899999999999999999987 4444 4555555577665 69999999999988765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 264 (593)
+-+-...|+.---+|..|++++|...|++....-.-|. ..||.++.-+..+.|+.+.|.+.|++-.+..-. ...+..
T Consensus 100 -p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l 177 (250)
T COG3063 100 -PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALL 177 (250)
T ss_pred -CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHH
Confidence 44566788888889999999999999999886433233 478999999999999999999999998865422 234567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
.+.+...+.|++-.|..++++....+- ++.+..-.-+..-
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iria 217 (250)
T COG3063 178 ELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIA 217 (250)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHH
Confidence 788888899999999999998877555 6666555444443
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.82 E-value=0.0023 Score=64.05 Aligned_cols=194 Identities=9% Similarity=-0.013 Sum_probs=142.3
Q ss_pred CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCC
Q 007684 76 KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155 (593)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~ 155 (593)
.|++..|+...... .+-...|...|-.-..+.-+.||.+.|-.+..+..+.--.++...+-+.-......
T Consensus 97 eG~~~qAEkl~~rn-------ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~--- 166 (400)
T COG3071 97 EGDFQQAEKLLRRN-------AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR--- 166 (400)
T ss_pred cCcHHHHHHHHHHh-------hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC---
Confidence 57777777766332 24455566667777788888999999999999988774344555555555555555
Q ss_pred CCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc-------ccH
Q 007684 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL-------RSY 228 (593)
Q Consensus 156 ~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty 228 (593)
|+...|.+-.+++.+.+ +-+........++|.+.|++.....++.+|.+.|+--+. .+|
T Consensus 167 -------------~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~ 232 (400)
T COG3071 167 -------------RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAW 232 (400)
T ss_pred -------------CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHH
Confidence 48889998888888877 567778899999999999999999999999998874443 356
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 007684 229 GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 229 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~ 294 (593)
..++.-....+..+.-...+++... ..+-+...-.+++.-+.+.|+.++|.++..+..+.+..|.
T Consensus 233 ~glL~q~~~~~~~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 233 EGLLQQARDDNGSEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred HHHHHHHhccccchHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 6666666555555554455555432 2344556667788888899999999999988887666655
No 62
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.81 E-value=0.007 Score=65.10 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 270 (593)
++..+...|-..|+.++|++++++..+. .|+ ...|..-...|-..|++++|.+.+++...... -|-..=+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHH
Confidence 5566677788999999999999988874 477 46788888888899999999999999886554 2555556677788
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 271 VDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 271 ~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
.++|+.++|.+++......+..|......+=..||
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 89999999999988887665555555554444555
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.0002 Score=69.41 Aligned_cols=194 Identities=8% Similarity=0.014 Sum_probs=147.7
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
+-+-++|.+.|.+.+|+..+.+.+ ...+..++|-.|-.+|.+..+...|+.+|.+-.+. -|-.+||-.=+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL--------~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ 296 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSL--------TQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQ 296 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHh--------hcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhh
Confidence 678889999999999999886655 22455678999999999999999999999987766 67777765443
Q ss_pred H-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 147 Y-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
. .+... +..++|.++|+...+.. +-+..+..++...|.-.+++|.|++.++++.+.|+ -+.
T Consensus 297 ARi~eam----------------~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~sp 358 (478)
T KOG1129|consen 297 ARIHEAM----------------EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSP 358 (478)
T ss_pred HHHHHHH----------------HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CCh
Confidence 3 34333 46788888888877654 55666777788888888888888888888888887 667
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE--LSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..|+.+--+|...+.+|.+..-|+.....--.|+... |-.|-...+..|+...|.+.|+-...
T Consensus 359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 7888888888888888888888887775544455433 66666666777888888877776655
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.80 E-value=0.0057 Score=61.37 Aligned_cols=247 Identities=15% Similarity=0.078 Sum_probs=157.2
Q ss_pred CCcccHHHHHHHHHHh-CCChh---hHHhhcCCc-cccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC
Q 007684 32 SNCHTYRSLLCWHMHS-FTKPI---TDIKQNRFS-ADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP 103 (593)
Q Consensus 32 pd~~~~~~ll~~~~~~-~~~~~---~~m~~~g~~-~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (593)
-+.+..+-++.+..+. +.+.. ..|.+.--. +|... -.........|+.+.|..-..+.+ +-.+.+
T Consensus 114 ~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll-------~~~pr~ 186 (400)
T COG3071 114 GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLL-------EMTPRH 186 (400)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHH-------HhCcCC
Confidence 4555666677766655 22111 223222222 23333 444456778888899888887776 555678
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-------QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 176 (593)
..+.+....+|.+.|++.+...+...|.+.|+--+ ..+|+.+|.-+...+ ..+.-..
T Consensus 187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~----------------~~~gL~~ 250 (400)
T COG3071 187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN----------------GSEGLKT 250 (400)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc----------------cchHHHH
Confidence 88899999999999999999999999999986544 357777777555542 2222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hCC
Q 007684 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-ESG 255 (593)
Q Consensus 177 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g 255 (593)
.++..- ...+-+...-.+++.-+.++|+.++|.++.++-.+.+..|++ ..+-.+.+-++...-.+..++.. ..+
T Consensus 251 ~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 251 WWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 333221 122334455556777777888888888888877776665652 22334445566666665555544 345
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchh
Q 007684 256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDA 310 (593)
Q Consensus 256 ~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~ 310 (593)
..| -.+.+|-..|.+.+.+.+|.+.|+... ..+|+.++|..+-..|...+.
T Consensus 326 ~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~ 376 (400)
T COG3071 326 EDP--LLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGE 376 (400)
T ss_pred CCh--hHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCC
Confidence 445 446777777778888888888777443 366777777777777755543
No 65
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0035 Score=63.87 Aligned_cols=211 Identities=10% Similarity=0.040 Sum_probs=119.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHCC-CC-CCHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMC-SKRGDVFEALRLYDDARSNG-IT-LSQHHYN 143 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g-~~-p~~~ty~ 143 (593)
-++..++-...+.+++..-..... ..+.+....+-+.+.++ -...|+++|+++|++++++. .. -|..+|+
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~-------~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLS-------SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 445555554444444443332222 22223333344444444 44589999999999999883 11 1567777
Q ss_pred HHHHHHHccCC----------CCCCC-----CCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 007684 144 VLLYVCSCKCG----------SESSE-----NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEM 208 (593)
Q Consensus 144 ~ll~~~~~~~~----------~~~~~-----~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~ 208 (593)
-+|..-..... ++..+ -+.+-|+-.+..++|...|+...+.+ +-....++.+-.-|....+...
T Consensus 304 N~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 76653333110 00000 00111222356666777777666655 4455566666666777777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 209 AFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 209 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
|.+-++...+..- -|-+.|=-+..+|.-.+...=|.-.|++... ++| |...|.+|.++|.+.++.++|...|.+..
T Consensus 383 Ai~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 383 AIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7777776665321 3345666666777766666666666666553 333 44557777777777777777777776665
Q ss_pred H
Q 007684 288 T 288 (593)
Q Consensus 288 ~ 288 (593)
.
T Consensus 460 ~ 460 (559)
T KOG1155|consen 460 L 460 (559)
T ss_pred h
Confidence 5
No 66
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.0009 Score=73.76 Aligned_cols=210 Identities=11% Similarity=0.054 Sum_probs=147.0
Q ss_pred HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 007684 69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLY 147 (593)
Q Consensus 69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~ 147 (593)
+...+-..++.+.|.+.|.+++ ...+.-...|-.+..+.-..+...+|..++.+..+. .-.|+..++ +=.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Il-------kehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl--~G~ 572 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSIL-------KEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSL--LGN 572 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHH-------HHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHH--HHH
Confidence 3344445567888888887777 333333344666665555567777777777776644 233444332 111
Q ss_pred HHHccCCCCCCCC--------------------------------CCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 148 VCSCKCGSESSEN--------------------------------GDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS 195 (593)
Q Consensus 148 ~~~~~~~~~~~~~--------------------------------~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 195 (593)
.+.....+..+.. ..+.-...+..++|+++|.+..... +-|..+-|.
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccc
Confidence 3332222221110 0111122467889999999998876 678889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~g 274 (593)
+.-.++..|++++|..+|.+..+... -...+|-.+..+|..+|++-.|+++|+.... ..-.-+....+.|.+++-+.|
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~ 730 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAG 730 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999998654 3456788899999999999999999998664 444456677999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 007684 275 KVDKVYEILHRLRTL 289 (593)
Q Consensus 275 ~~~~a~~~l~~m~~~ 289 (593)
.+.+|.+.+...+..
T Consensus 731 ~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 731 KLQEAKEALLKARHL 745 (1018)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999988877663
No 67
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.76 E-value=0.00037 Score=57.32 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCC--------hhHHHHHHHHHHhCCCCCCHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGI-PPKLRSYGPALFGFCKLGN--------TDKAYEVDAHMGESGVVPEEPE 262 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~--------~~~A~~l~~~m~~~g~~p~~~t 262 (593)
|-..-|.-|...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +-.++.+|++|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445667777777999999999999999999 8999999999999987642 3356788999998889999999
Q ss_pred HHHHHHHHHh
Q 007684 263 LSALLKLSVD 272 (593)
Q Consensus 263 ~~~Ll~~~~~ 272 (593)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998888765
No 68
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.7e-05 Score=48.30 Aligned_cols=29 Identities=38% Similarity=0.752 Sum_probs=16.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESG 255 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g 255 (593)
|||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 69
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.0036 Score=64.17 Aligned_cols=218 Identities=12% Similarity=0.116 Sum_probs=156.1
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH
Q 007684 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF 193 (593)
Q Consensus 114 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 193 (593)
+.-.|+..+|..-|+...+....++.- |--+-.+|...+ +-++....|++....+ +-|..+|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~----------------~~~~~~~~F~~A~~ld-p~n~dvY 397 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADEN----------------QSEKMWKDFNKAEDLD-PENPDVY 397 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhh----------------ccHHHHHHHHHHHhcC-CCCCchh
Confidence 444689999999999999886554432 444445666653 7789999999988776 5566778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684 194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272 (593)
Q Consensus 194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 272 (593)
.--...+.-.+++++|..=|++.+. +.|. ...|--+-.+.-|.+.+++++..|++.++ .++--...|+-....+..
T Consensus 398 yHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 398 YHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTD 474 (606)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhh
Confidence 8777788888999999999999887 4455 45666666777789999999999999876 344445568889999999
Q ss_pred cCCHHHHHHHHHHHHHcc-----CCCCHHHH--HHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCce
Q 007684 273 AKKVDKVYEILHRLRTLV-----RQVSESTF--KIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW 345 (593)
Q Consensus 273 ~g~~~~a~~~l~~m~~~~-----~~~~~~t~--~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~ 345 (593)
.+++++|.+.|+...+.. +.++..++ ..++- -.|.
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~------------~qwk-------------------------- 516 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV------------LQWK-------------------------- 516 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh------------hchh--------------------------
Confidence 999999999999887621 11222111 11110 0011
Q ss_pred EEEEecccCCCCcCcccccc----cccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHH
Q 007684 346 RVERTQIDENGVCCSCNERL----VCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLG 403 (593)
Q Consensus 346 ~v~~~~i~~~g~c~~~~~al----~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~ 403 (593)
+....++ +.+.++|.-...+..|-.-...+|++++|+++|++-..
T Consensus 517 -------------~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 -------------EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred -------------hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1111222 23447787788899999999999999999999998653
No 70
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=5e-05 Score=47.69 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGI 221 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 221 (593)
+|||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 71
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.61 E-value=0.00092 Score=66.73 Aligned_cols=150 Identities=17% Similarity=0.126 Sum_probs=104.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHH
Q 007684 112 DMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEA 191 (593)
Q Consensus 112 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ 191 (593)
..+...|++++|++++..- -+.......+.+|... ++++.|.+.++.|.+.. +..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~----------------~R~dlA~k~l~~~~~~~---eD~ 164 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKM----------------NRPDLAEKELKNMQQID---EDS 164 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHT----------------T-HHHHHHHHHHHHCCS---CCH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHc----------------CCHHHHHHHHHHHHhcC---CcH
Confidence 4466679999998888642 2445555556666665 48999999999998753 345
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 007684 192 TFTSVARLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALL 267 (593)
Q Consensus 192 ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll 267 (593)
+.+.|+.++.. .+.+.+|+-+|+++.+. ..++..+.|.+..++...|++++|++++.+..+.+ .-+..++..++
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNli 242 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 55666666554 34688999999998764 44677788888888889999999999988876543 23456677788
Q ss_pred HHHHhcCCH-HHHHHHHHHHHH
Q 007684 268 KLSVDAKKV-DKVYEILHRLRT 288 (593)
Q Consensus 268 ~~~~~~g~~-~~a~~~l~~m~~ 288 (593)
.++...|+. +.+.+++.+++.
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCChhHHHHHHHHHHH
Confidence 888888876 667788888876
No 72
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.0047 Score=68.36 Aligned_cols=325 Identities=12% Similarity=0.039 Sum_probs=177.6
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGV--LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNV 144 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 144 (593)
-.+-.+|-..|++++|...|.+.. +. .++..+ +--|..+|.+.|+++.|...|+..... .||..--..
T Consensus 311 Y~~gRs~Ha~Gd~ekA~~yY~~s~------k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~ 380 (1018)
T KOG2002|consen 311 YQLGRSYHAQGDFEKAFKYYMESL------KA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMK 380 (1018)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH------cc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHH
Confidence 456667778888888877773333 11 111112 455677777888888888877777665 444433333
Q ss_pred HHH-HHHccCC-C---CCC--------CCCC---Ccc------cccccHHHHHHHHHH----HHhCCCCCCHHHHHHHHH
Q 007684 145 LLY-VCSCKCG-S---ESS--------ENGD---REN------DSNLGLKRGFEIFQQ----MITDKVDPNEATFTSVAR 198 (593)
Q Consensus 145 ll~-~~~~~~~-~---~~~--------~~~~---~~~------~~~g~~~~a~~l~~~----M~~~g~~p~~~ty~~li~ 198 (593)
+|. +|+..+. - +.+ +... +++ .-.++...++..|.. |...+..+-....|++..
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 333 4544310 0 000 0000 000 012344444555543 344555677788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhC---CCCCCcc-------cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHH
Q 007684 199 LAVAKEDPEMAFDLVKQMKSF---GIPPKLR-------SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALL 267 (593)
Q Consensus 199 ~~~~~g~~~~A~~l~~~m~~~---g~~p~~~-------ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll 267 (593)
.+...|++++|...|++.+.. ...++.. -|| +-..+-..++.+.|.++|..+.... |.-+. |-.|.
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~ 537 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLG 537 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhh
Confidence 999999999999999988654 1223331 455 5555566778899999999987532 44333 55554
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccchh--hhHHHhhhcCCCcccccccccCCce
Q 007684 268 KLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWDV--SKVREGIVRGGGGWHGQGWLGSGKW 345 (593)
Q Consensus 268 ~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~g~~~~g~~~~~~~~~ 345 (593)
......+...+|...+.+... ...-++...+.+=.|+-.. ..|.. ........+.-...+.++.+..|..
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~-~d~~np~arsl~G~~~l~k-------~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALN-IDSSNPNARSLLGNLHLKK-------SEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHh-cccCCcHHHHHHHHHHHhh-------hhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 333445677788888877765 2223333444444455322 22322 1111111111111222222222210
Q ss_pred EEEEecccCCC--------CcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC-CcCeee
Q 007684 346 RVERTQIDENG--------VCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG-PFDAVI 412 (593)
Q Consensus 346 ~v~~~~i~~~g--------~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~-~~d~vi 412 (593)
.+...+ .-+.-.+|++.+. ..|.+...-+.+-..++..|++.+|..+|.+..+... -+|+.|
T Consensus 610 -----~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~l 684 (1018)
T KOG2002|consen 610 -----YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWL 684 (1018)
T ss_pred -----HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceee
Confidence 010000 1122345555544 5566665555566678889999999999999988876 566666
Q ss_pred eccce
Q 007684 413 DGANV 417 (593)
Q Consensus 413 dg~nv 417 (593)
--+++
T Consensus 685 Nlah~ 689 (1018)
T KOG2002|consen 685 NLAHC 689 (1018)
T ss_pred eHHHH
Confidence 54444
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.57 E-value=0.0068 Score=62.68 Aligned_cols=199 Identities=9% Similarity=-0.047 Sum_probs=126.5
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~l 145 (593)
..+...+...|+.+++...+.... +.......+..........+...|++++|.+++++..+. .|+ ...++.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAA----QALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHH----HHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 344445555666666644443222 111111222233334455567789999999999998876 343 333332
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN-EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
...+...+ ...|....+.+.++. .....|+ ......+...+...|++++|.+.+++..+.. |+
T Consensus 83 ~~~~~~~~------------~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~ 146 (355)
T cd05804 83 HLGAFGLG------------DFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD 146 (355)
T ss_pred hHHHHHhc------------ccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC
Confidence 11111110 001355556666654 2222344 3455567778899999999999999998843 54
Q ss_pred -cccHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 225 -LRSYGPALFGFCKLGNTDKAYEVDAHMGESGV-VPEE--PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 225 -~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
...+..+...|...|++++|...+++.....- .|+. ..|..+...+...|+.++|..++++...
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 56677888899999999999999999875322 2333 3456788889999999999999999854
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.51 E-value=0.0022 Score=64.05 Aligned_cols=185 Identities=9% Similarity=0.032 Sum_probs=115.9
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKR-GDVFEALRLYDDARSNGITLSQHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~ty~~l 145 (593)
-++.++|...|+.+.+..-. .....++......+ ..|.+. ++-+.++.-+++....+...+..++..+
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei----------~~~~~~~l~av~~l-a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~ 107 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEI----------KKSSSPELQAVRLL-AEYLSSPSDKESALEELKELLADQAGESNEIVQLL 107 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-----------TTSSCCCHHHHHH-HHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHH
T ss_pred HHHHHHHHHcCChhHHHHHh----------ccCCChhHHHHHHH-HHHHhCccchHHHHHHHHHHHHhccccccHHHHHH
Confidence 67888888888876544322 12223333334444 444444 5555555555444333333233333333
Q ss_pred HH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 146 LY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 146 l~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
.. .+.. .|++++|++++..- .+.......+..|.+.+++|.|.+.++.|.+.. .|
T Consensus 108 ~A~i~~~----------------~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD 163 (290)
T PF04733_consen 108 AATILFH----------------EGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED 163 (290)
T ss_dssp HHHHHCC----------------CCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC
T ss_pred HHHHHHH----------------cCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence 32 3333 36999999888642 456777788899999999999999999998742 34
Q ss_pred cccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 225 LRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 225 ~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
. +-..+..++.. .+.+.+|+-+|+++.+ ...++..+++.+..+....|++++|.+++.+..+
T Consensus 164 ~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 164 S-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp H-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred H-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3 33335554443 3468999999999865 4567888899999999999999999998887644
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.51 E-value=0.017 Score=53.93 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=151.8
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHH-YNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-y~~l 145 (593)
--|--.|...|+...|...++..+ +..+....++..+-..|-+.|..+.|.+-|+...+. .|+.-. .|--
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL-------~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNY 109 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKAL-------EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-------HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhh
Confidence 345558999999999999887666 444556667999999999999999999999998877 444322 1111
Q ss_pred H-HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007684 146 L-YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223 (593)
Q Consensus 146 l-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 223 (593)
= -+|.+ |++++|...|++....-. .--..||.++.-+..+.|+.+.|...|++-.+.. |
T Consensus 110 G~FLC~q-----------------g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p 170 (250)
T COG3063 110 GAFLCAQ-----------------GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--P 170 (250)
T ss_pred hHHHHhC-----------------CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--c
Confidence 1 15665 589999999999876422 2223578899888899999999999999998743 4
Q ss_pred C-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 224 K-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 224 ~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+ ..+.-.+.....+.|+.-.|...++.....+. ++..++-..|+.-...|+.+.+.++=..+..
T Consensus 171 ~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 171 QFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred CCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4 45677788888999999999999999887666 8888888889988899999988887777655
No 76
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.51 E-value=0.0016 Score=67.72 Aligned_cols=122 Identities=16% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007684 135 ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD--KVDPNEATFTSVARLAVAKEDPEMAFDL 212 (593)
Q Consensus 135 ~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l 212 (593)
..-+......+++.+.... +++++.+++...+.. ....-..|.+++|+.|.+.|..+.+..+
T Consensus 62 ~~vS~~dld~fvn~~~~~~----------------~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~ 125 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKD----------------DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLEL 125 (429)
T ss_pred CCCcHHHHHHHHhhcCCHh----------------HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHH
Confidence 3445556666666665542 666777777666643 2222234455777777777777777777
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684 213 VKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD 272 (593)
Q Consensus 213 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~ 272 (593)
++.=...|+-||..|||.+|+.+.+.|++..|.++..+|...+...+..|+.--+.+|.+
T Consensus 126 L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 126 LKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777666665565665554444433
No 77
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.50 E-value=0.0084 Score=64.51 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=107.2
Q ss_pred HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007684 69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV 148 (593)
Q Consensus 69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~ 148 (593)
....+...|++++|+....... .........+......+.+.|+.++|..+|..+.+. .|+...|-..+..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~-------~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~ 80 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNE-------KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhh-------hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHH
Confidence 3456788899999998873332 222333445888889999999999999999999998 5677777777665
Q ss_pred HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCccc
Q 007684 149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDP-EMAFDLVKQMKSFGIPPKLRS 227 (593)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t 227 (593)
|..... -......+...++|+++...- |...+.--+.-.+..-..+ ..+..++..+...|+ |+ +
T Consensus 81 ~~g~~~----------~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv-Ps--l 145 (517)
T PF12569_consen 81 ALGLQL----------QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV-PS--L 145 (517)
T ss_pred HHhhhc----------ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC-ch--H
Confidence 542110 000124556666666665543 2222222221111111111 233444455555665 42 4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 228 YGPALFGFCKLGNTDKAYEVDAHMGES----G----------VVPEEP--ELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 228 y~~li~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~~--t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
|+.+-..|......+-..+++..+... + -.|... ++.-|-..|-..|+.++|++++++..+
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 555555555444444444444444321 1 112222 223344455566677777766666655
No 78
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.48 E-value=0.00068 Score=72.54 Aligned_cols=217 Identities=12% Similarity=0.027 Sum_probs=155.8
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+...+...|-...|..++.. ...+.-.|..|+..|+..+|..+..+..++ +|+...|..+.
T Consensus 402 ~~laell~slGitksAl~I~Er---------------lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFER---------------LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHh---------------HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 6777788888888888888721 234677778888888888888887776664 66777776664
Q ss_pred HHHHccCC----CCCCCCC--------CCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684 147 YVCSCKCG----SESSENG--------DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 147 ~~~~~~~~----~~~~~~~--------~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 214 (593)
..-.+..- ++.++.+ -.....+++++++.+.|+.-.+.+ +.-..+|-.+-.++.+.++++.|.+.|.
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 42222110 1111100 011233578999999998766554 5566788888888889999999999999
Q ss_pred HHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-C
Q 007684 215 QMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR-Q 292 (593)
Q Consensus 215 ~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~-~ 292 (593)
.... +.|+ ...||++-.+|.+.|+-.+|+..+.+..+.+ .-+...|..-+-...+.|.+++|.+.++++..... .
T Consensus 544 rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 544 RCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 9887 5577 5789999999999999999999999999877 45666788888888999999999999999876322 2
Q ss_pred CCHHHHHHHHHH
Q 007684 293 VSESTFKIIEDW 304 (593)
Q Consensus 293 ~~~~t~~~l~~~ 304 (593)
-+...-..++..
T Consensus 621 ~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 621 KDDEVLLIIVRT 632 (777)
T ss_pred ccchhhHHHHHH
Confidence 244444444433
No 79
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.39 E-value=0.0057 Score=61.91 Aligned_cols=135 Identities=10% Similarity=0.126 Sum_probs=99.4
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
+...|++++.+.... ++-|....+.|...|-+.|+-..|++.+-+--.. ++-+..|..-|..-|....-.++|...|+
T Consensus 573 d~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~e 650 (840)
T KOG2003|consen 573 DPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFE 650 (840)
T ss_pred CHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455566665444322 4567788888888999999988888877654332 33456777767777778888889999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684 250 HMGESGVVPEEPELSALLKLSV-DAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 250 ~m~~~g~~p~~~t~~~Ll~~~~-~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~ 309 (593)
+.. =+.|+..-|..||..|. +.|++.+|++++++..+ ...-+......|+..+...+
T Consensus 651 kaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 651 KAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence 764 46799999999988765 68999999999999865 34456677788888776555
No 80
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.38 E-value=0.0082 Score=53.31 Aligned_cols=83 Identities=8% Similarity=-0.046 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|.+.|+...... +.+..++..+..++...|++++|...|++.....- .+...+..+..++.+.|+.++|.+.|
T Consensus 38 g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~g~~~eAi~~~ 115 (144)
T PRK15359 38 GDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMMGEPGLAREAF 115 (144)
T ss_pred CCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 46666666666666554 44555666666666666666666666666665321 23455555666666666666666666
Q ss_pred HHHHh
Q 007684 249 AHMGE 253 (593)
Q Consensus 249 ~~m~~ 253 (593)
+...+
T Consensus 116 ~~Al~ 120 (144)
T PRK15359 116 QTAIK 120 (144)
T ss_pred HHHHH
Confidence 66553
No 81
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0014 Score=60.82 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=66.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684 124 LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK 203 (593)
Q Consensus 124 ~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 203 (593)
...|+..... ..|..+|..++..|.+.. --+.|..+-...-+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~--~k~K~~F~~~V~~f~~~~-----------~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg 100 (228)
T PF06239_consen 34 EELFERAPGQ--AKDKATFLEAVDIFKQRD-----------VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG 100 (228)
T ss_pred HHHHHHHhhc--cccHHHHHHHHHHHHhcC-----------CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC
Confidence 3445544222 447788888888887641 123478888999999999999999999999999987652
Q ss_pred ----------------CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 007684 204 ----------------EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG 239 (593)
Q Consensus 204 ----------------g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 239 (593)
.+-+-|.+++++|...|+.||..|+..++..|++.+
T Consensus 101 ~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 101 KFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred CcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 112344455555555555555555555555554444
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.37 E-value=0.011 Score=55.64 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=102.0
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHH-HhcCC--hhHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGF-CKLGN--TDKA 244 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~-~~~g~--~~~A 244 (593)
++.+++...++...+.. +.|...|..+...|...|++++|...+++..+. .|+ ...+..+..++ ...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 47788888888877776 778899999999999999999999999999874 354 56777777764 67777 5999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301 (593)
Q Consensus 245 ~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l 301 (593)
.+++++..+.+-. +...+..|...+.+.|++++|...++++.+. ..|+..-+.+|
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~~i 184 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHHHH
Confidence 9999999875532 4566888888999999999999999999873 33455555555
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.34 E-value=0.0076 Score=52.61 Aligned_cols=118 Identities=7% Similarity=-0.018 Sum_probs=89.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 007684 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256 (593)
Q Consensus 177 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 256 (593)
.|+...... +.+......+...+...|+.++|.+.++.....+- .+...+..+...|.+.|+.++|...++.....+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 445555433 22445677788888999999999999999987542 356788888999999999999999999887654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHH
Q 007684 257 VPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFK 299 (593)
Q Consensus 257 ~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~ 299 (593)
..+...+..+...+...|+.++|...+++..+ ..|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHH
Confidence 33556677788899999999999999998877 345554443
No 84
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.34 E-value=0.0038 Score=64.98 Aligned_cols=132 Identities=10% Similarity=0.040 Sum_probs=111.0
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 177 IFQQMIT---DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF--GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 177 l~~~M~~---~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
++..|.+ .+.+.+......++..+....++|.+..++-+.... .......|..++|+.|.+.|..++|.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 445678889999999999999999999999998764 22222346679999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcc
Q 007684 252 GESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSV 308 (593)
Q Consensus 252 ~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~ 308 (593)
...|+-||..++|.||+.+.+.|++..|.++.-.|.......++.|+..-+..|.+.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998888888888887777766555
No 85
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.29 E-value=0.0023 Score=59.34 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC----------------ChhHHH
Q 007684 187 DPNEATFTSVARLAVA-----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLG----------------NTDKAY 245 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g----------------~~~~A~ 245 (593)
..|-.+|..+|..+.+ .|.++-....++.|.+.|+.-|+.+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 5788999999999986 4778999999999999999999999999999987622 235577
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 246 EVDAHMGESGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 274 (593)
+++++|+..|+-||..|+..|++.+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 88888888888888888888888876655
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.0047 Score=60.81 Aligned_cols=254 Identities=14% Similarity=0.111 Sum_probs=155.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN 189 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~ 189 (593)
|+.-|.+.+++.+|..+.+++.-. ..|..++.+........+.+ ....++-|...|+..-+.+..-|
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt------tP~EyilKgvv~aalGQe~g-------SreHlKiAqqffqlVG~Sa~ecD 357 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT------TPYEYILKGVVFAALGQETG-------SREHLKIAQQFFQLVGESALECD 357 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC------ChHHHHHHHHHHHHhhhhcC-------cHHHHHHHHHHHHHhcccccccc
Confidence 455688899999999998765422 22334454333321111110 01256677888877766665544
Q ss_pred HH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-HH
Q 007684 190 EA-TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA-LL 267 (593)
Q Consensus 190 ~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-Ll 267 (593)
+. ---++.+.+.-.-++|+++-.++.++..-..-|...|| +..+++..|+..+|+++|-.+....++ |..+|-+ |.
T Consensus 358 TIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LA 435 (557)
T KOG3785|consen 358 TIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLA 435 (557)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHH
Confidence 43 23455666667778999999999998876656677777 889999999999999999887654444 5566654 56
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCCCCHH--HHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCce
Q 007684 268 KLSVDAKKVDKVYEILHRLRTLVRQVSES--TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGKW 345 (593)
Q Consensus 268 ~~~~~~g~~~~a~~~l~~m~~~~~~~~~~--t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~~ 345 (593)
++|.+.+..+.|++++-++.. |++. ....|.+-|...+.+..+ .+-+..+....-
T Consensus 436 rCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyya------aKAFd~lE~lDP------------- 492 (557)
T KOG3785|consen 436 RCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYA------AKAFDELEILDP------------- 492 (557)
T ss_pred HHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHH------HHhhhHHHccCC-------------
Confidence 788999999999988877754 3222 335566666544433333 233333332221
Q ss_pred EEEEecccCCCCcCcccccccccC---CCHHHHHHHHHHHHHHhhhhhh--HHhHHHHHHHHHhc
Q 007684 346 RVERTQIDENGVCCSCNERLVCID---IDPRETENFASSLSNLACQREV--RSDFNKFQEWLGRH 405 (593)
Q Consensus 346 ~v~~~~i~~~g~c~~~~~al~~~~---l~~~~~~~~~~~i~~l~~~~~~--~~a~~~f~~~l~~~ 405 (593)
+.-...|+-|.|..-.+.+- -.|.-..+...++.-+...+.. +-.+++.++|.+.+
T Consensus 493 ----~pEnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa~~~ 553 (557)
T KOG3785|consen 493 ----TPENWEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWAETH 553 (557)
T ss_pred ----CccccCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHHHhc
Confidence 11122344455544333332 4444456677777666665543 44567777777654
No 87
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.21 E-value=0.01 Score=52.71 Aligned_cols=116 Identities=10% Similarity=-0.048 Sum_probs=90.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 175 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
.++|++..+. .|+ .+..+...+...|++++|...|+......- .+...|..+..++.+.|++++|...|+.....
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555533 244 355678888999999999999999987432 35678888999999999999999999999864
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHH
Q 007684 255 GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTF 298 (593)
Q Consensus 255 g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~ 298 (593)
+ ..+...+..+..++...|+.++|...|++..+ ..|+...+
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~ 128 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASW 128 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHH
Confidence 3 23566788899999999999999999999876 44544433
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.019 Score=54.64 Aligned_cols=159 Identities=8% Similarity=-0.078 Sum_probs=104.9
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCC
Q 007684 108 RHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVD 187 (593)
Q Consensus 108 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~ 187 (593)
..+-..+.-.|+-+.+..+........ .-|....+.+...-.+. |++.+|...|++..... +
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~----------------g~~~~A~~~~rkA~~l~-p 131 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRN----------------GNFGEAVSVLRKAARLA-P 131 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHh----------------cchHHHHHHHHHHhccC-C
Confidence 334444555666666666665533221 22333333344444443 57888888888877655 7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 188 PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266 (593)
Q Consensus 188 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 266 (593)
+|..+|+.+--+|.+.|+.++|..-|.+..+. .|+ ...+|++...|.-.|+.+.|..++.+....+- -|...-..|
T Consensus 132 ~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NL 208 (257)
T COG5010 132 TDWEAWNLLGAALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNL 208 (257)
T ss_pred CChhhhhHHHHHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHH
Confidence 77788888888888888888888888877763 333 46677788888888888888888887766543 255556667
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 007684 267 LKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 267 l~~~~~~g~~~~a~~~l~~m~ 287 (593)
.-+....|++++|..+...-+
T Consensus 209 Al~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 209 ALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHhhcCChHHHHhhccccc
Confidence 777777888888877655443
No 89
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.20 E-value=0.023 Score=57.74 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=104.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
+-.+.+.|-...+...|++++-+..+. ++-|+.....|-.+|-+. |+-..|+..+-+-.. -.
T Consensus 561 l~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqe----------------gdksqafq~~ydsyr-yf 622 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQE----------------GDKSQAFQCHYDSYR-YF 622 (840)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcc----------------cchhhhhhhhhhccc-cc
Confidence 333334444444444444444332222 222444445555555554 688888887765543 34
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF-CKLGNTDKAYEVDAHMGESGVVPEEPELSA 265 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 265 (593)
+-|..|..-|...|....-+++|..+|++..- +.|+..-|-.||..| .+.|++.+|+++|++..+ .+.-|...+.-
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkf 699 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKF 699 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHH
Confidence 77889999999999999999999999998765 779999999888554 578999999999999865 56667788888
Q ss_pred HHHHHHhcCC
Q 007684 266 LLKLSVDAKK 275 (593)
Q Consensus 266 Ll~~~~~~g~ 275 (593)
|++.+...|.
T Consensus 700 lvri~~dlgl 709 (840)
T KOG2003|consen 700 LVRIAGDLGL 709 (840)
T ss_pred HHHHhccccc
Confidence 8888887774
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.03 Score=58.89 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHh
Q 007684 371 DPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQ 439 (593)
Q Consensus 371 ~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~ 439 (593)
.|.|...|+.+...++...+..+|++.|++.++-.+.|--+-.++-|++++. +-.++++++|..
T Consensus 460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl-----G~ykEA~~hlL~ 523 (579)
T KOG1125|consen 460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL-----GAYKEAVKHLLE 523 (579)
T ss_pred CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh-----hhHHHHHHHHHH
Confidence 4567788999999999999999999999999998887766666666666655 345677777765
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.13 E-value=0.0098 Score=61.61 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=80.9
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l 247 (593)
++++.|.++|+++.+.. |+. ...|++.+...++-.+|.+++++..+.. | +......-...+.+.++.+.|.++
T Consensus 183 ~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 183 QRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred ccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47888888888888765 553 3457777777888888888888877532 3 233334444556788888888888
Q ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 248 DAHMGESGVVPEEP-ELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 248 ~~~m~~~g~~p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
.+++.+ ..|+.. +|..|..+|...|+++.|+..++.+-
T Consensus 257 Ak~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 257 AKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888874 346654 68888888888888888888887764
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.12 E-value=0.023 Score=63.61 Aligned_cols=162 Identities=12% Similarity=0.034 Sum_probs=122.2
Q ss_pred hcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684 98 ARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCSCKCGSESSENGDRENDSNLGLKRGFE 176 (593)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll-~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 176 (593)
.........+..|-....+.|..++|..+++...+. .|+....-..+ ..+.+. +++++|..
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~----------------~~~eeA~~ 141 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQ----------------QGIEAGRA 141 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHh----------------ccHHHHHH
Confidence 344556777889999999999999999999999887 77765544444 355554 59999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684 177 IFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255 (593)
Q Consensus 177 l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 255 (593)
.+++..... +-+....+.+..++.+.|+.++|..+|++....+ |+ ..++...-.++-+.|+.++|...|+...+.
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~- 217 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA- 217 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999999876 5566778888889999999999999999999733 55 577888888999999999999999998752
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 256 VVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 256 ~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
..|....|+.++. +...-..+++++.
T Consensus 218 ~~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 218 IGDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred hCcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 2244455555433 2333444555553
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.09 E-value=0.022 Score=65.47 Aligned_cols=205 Identities=11% Similarity=0.065 Sum_probs=140.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
---|....+.+..++|.+++++.+. ....++ ...-...|-++++.-.--|.-+...++|+++.+.. -....|..|+
T Consensus 1462 I~YMaf~LelsEiekAR~iaerAL~-tIN~RE-eeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1462 IRYMAFHLELSEIEKARKIAERALK-TINFRE-EEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLL 1537 (1710)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhh-hCCcch-hHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHH
Confidence 3344455667777777777766551 110000 00011236666666666677778888888887752 1234566667
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 226 (593)
..|... +..++|-++|+.|.+.- .-....|...+..+.+..+-+.|..++++..+ ..|...
T Consensus 1538 ~iy~k~----------------ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~e 1598 (1710)
T KOG1070|consen 1538 GIYEKS----------------EKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQE 1598 (1710)
T ss_pred HHHHHh----------------hcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhh
Confidence 777776 48899999999998754 25667888889999999999999999998876 336632
Q ss_pred c---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH
Q 007684 227 S---YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295 (593)
Q Consensus 227 t---y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~ 295 (593)
. -.-.+..-.+.|+.+.+..+|+.....-- -....|+..|+.-.++|..+.+..+|++..+.+..|..
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 2 22223333468999999999998875332 23456999999999999999999999999987776654
No 94
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.09 E-value=0.018 Score=51.18 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=85.6
Q ss_pred ccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHHhcCChhH
Q 007684 169 LGLKRGFEIFQQMITDKVDPN---EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL--RSYGPALFGFCKLGNTDK 243 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~ty~~li~~~~~~g~~~~ 243 (593)
++...+.+.++.+.... +.+ ....-.+...+...|++++|...|+........|.. ...-.+...+...|++++
T Consensus 25 ~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 47889999999998865 333 223334557788899999999999999986633332 233446778888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 244 AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 244 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
|...++......+ ....+..+.+.|.+.|+.++|...|++.
T Consensus 104 Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999977543333 3345667888999999999999998763
No 95
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.04 E-value=0.033 Score=57.57 Aligned_cols=134 Identities=17% Similarity=0.146 Sum_probs=75.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCC-HHHH
Q 007684 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPN-EATF 193 (593)
Q Consensus 116 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~-~~ty 193 (593)
..|++++|+..++.+... .||..-|..+.. .+... ++..+|.+.++.+.... |+ ....
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~----------------nk~~~A~e~~~kal~l~--P~~~~l~ 377 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEA----------------NKAKEAIERLKKALALD--PNSPLLQ 377 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----------------CChHHHHHHHHHHHhcC--CCccHHH
Confidence 445666666666666655 555555555544 44444 36666666666665543 33 3344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684 194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273 (593)
Q Consensus 194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~ 273 (593)
-++..++.+.|++.+|..+++..... .+-|...|..|-.+|...|+..+|.....++ |.-.
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~ 438 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALA 438 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhC
Confidence 44555666666666666666665543 2234556666666666666666555554443 2345
Q ss_pred CCHHHHHHHHHHHHH
Q 007684 274 KKVDKVYEILHRLRT 288 (593)
Q Consensus 274 g~~~~a~~~l~~m~~ 288 (593)
|+++.|...+.+..+
T Consensus 439 G~~~~A~~~l~~A~~ 453 (484)
T COG4783 439 GRLEQAIIFLMRASQ 453 (484)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666655544
No 96
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.011 Score=60.79 Aligned_cols=117 Identities=10% Similarity=0.133 Sum_probs=78.0
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHH----HHhcC
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL----RSYGPALFG----FCKLG 239 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~----~~~~g 239 (593)
++++++++..|++.+++- +--...||.....+...++++.|.+.|+..++ +.|+. ..-.++|.- +-=.+
T Consensus 441 ~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qwk~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--LEPREHLIIVNAAPLVHKALLVLQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--hccccccccccchhhhhhhHhhhchhh
Confidence 357888888888877665 44556788888888888888888888887765 22331 011111111 11237
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 240 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
++..|..++++..+..-+ .+..|..|...-...|+.++|+++|++-..
T Consensus 518 d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 518 DINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788888888877654321 345588888888888888888888887654
No 97
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.04 E-value=0.032 Score=52.42 Aligned_cols=127 Identities=7% Similarity=0.061 Sum_probs=97.5
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 116 KRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTS 195 (593)
Q Consensus 116 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~ 195 (593)
..++.+++...++...+.. +.|...|..|-..|... |+.++|.+.|++..+.. +-+...+..
T Consensus 51 ~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~----------------g~~~~A~~a~~~Al~l~-P~~~~~~~~ 112 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWR----------------NDYDNALLAYRQALQLR-GENAELYAA 112 (198)
T ss_pred CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC----------------CCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3667788887887766653 34666777766677776 59999999999988876 557778888
Q ss_pred HHHHH-HhcCC--hHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 007684 196 VARLA-VAKED--PEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPEL 263 (593)
Q Consensus 196 li~~~-~~~g~--~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 263 (593)
+..++ ...|+ .++|.+++++..+.. | +...+..+...+.+.|++++|...|+++.+.. .|+..-+
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 88864 67777 599999999998844 5 46788889999999999999999999998643 3444333
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.03 E-value=0.052 Score=60.79 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=99.9
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l 247 (593)
|..++|..+++...+.. +-+......++..+.+.+++|+|....++..... |+ ......+-.++.+.|+.++|.++
T Consensus 100 g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 100 HRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred CCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 69999999999999875 4566788899999999999999999999998843 66 45677778888999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
|++....+ .-+...+..+-.++...|+.++|...|++..+
T Consensus 177 y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 177 FERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999733 23467788999999999999999999999876
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.01 E-value=0.097 Score=49.96 Aligned_cols=143 Identities=9% Similarity=0.018 Sum_probs=98.6
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|+-+....+........ +-|....+..+....+.|++..|...+.+..... ++|...|+.+--+|-+.|+.+.|..-|
T Consensus 80 G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay 157 (257)
T COG5010 80 GDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAY 157 (257)
T ss_pred ccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHH
Confidence 35556666655544332 4455666778888899999999999999887643 367889999999999999999999888
Q ss_pred HHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccc
Q 007684 249 AHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVL 316 (593)
Q Consensus 249 ~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~ 316 (593)
.+..+ +.|+. ..+|.|.-.|.-.|+.+.|..++......+...+. .-+-+.-.....++...++.
T Consensus 158 ~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~-v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 158 RQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR-VRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH-HHHHHHHHHhhcCChHHHHh
Confidence 88775 33433 34788888888889999999988888765443332 22333333444454444443
No 100
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.00 E-value=0.016 Score=59.95 Aligned_cols=158 Identities=8% Similarity=-0.067 Sum_probs=107.0
Q ss_pred HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH---KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
...+...|++++|...+.+.+ ...+.+...+.. ........+....+.+.++. .....|+......++
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l-------~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~ 120 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLL-------DDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHH-------HHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHH
Confidence 345678899999988886666 333444444442 12222234555555555554 222344443333333
Q ss_pred H-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC
Q 007684 147 Y-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGI-PPK 224 (593)
Q Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~ 224 (593)
. .+... |++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.....- .|+
T Consensus 121 a~~~~~~----------------G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~ 183 (355)
T cd05804 121 AFGLEEA----------------GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSM 183 (355)
T ss_pred HHHHHHc----------------CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcc
Confidence 3 44443 69999999999999876 55677888999999999999999999999876321 133
Q ss_pred c--ccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 225 L--RSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 225 ~--~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
. ..|-.+...+...|+.++|.+++++...
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 2 2455688889999999999999999864
No 101
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.00 E-value=0.018 Score=55.76 Aligned_cols=171 Identities=18% Similarity=0.071 Sum_probs=116.2
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CCH-HH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP---EGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT-LSQ-HH 141 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t 141 (593)
-.+...+.+.|++++|...+.+.. ...+.+ ...+..+...+.+.|++++|...++++.+..-. |.. .+
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALE-------SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 555567889999999999986665 222222 235677888999999999999999999876321 111 12
Q ss_pred HHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHhcC
Q 007684 142 YNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF-----------------TSVARLAVAKE 204 (593)
Q Consensus 142 y~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty-----------------~~li~~~~~~g 204 (593)
+..+-..+... +.......|+.++|.+.|+.+...... +.... -.+...+.+.|
T Consensus 110 ~~~~g~~~~~~--------~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g 180 (235)
T TIGR03302 110 YYLRGLSNYNQ--------IDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG 180 (235)
T ss_pred HHHHHHHHHHh--------cccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22222233321 011122346899999999999876422 22121 14556778899
Q ss_pred ChHHHHHHHHHHHhCCC-CC-CcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 205 DPEMAFDLVKQMKSFGI-PP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~-~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
++++|...+++..+..- .| ....+..+..++.+.|+.++|...++.+..
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999986421 12 246788899999999999999999988864
No 102
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.98 E-value=0.026 Score=49.22 Aligned_cols=94 Identities=21% Similarity=0.184 Sum_probs=77.6
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|+.++|.+.|+.....+ +.+...+..+...+...|++++|..++++..+.+ +.+...+..+...|...|+.++|...|
T Consensus 31 ~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 108 (135)
T TIGR02552 31 GRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKAL 108 (135)
T ss_pred ccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 69999999999998876 5678889999999999999999999999987754 234677777888999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHH
Q 007684 249 AHMGESGVVPEEPELSAL 266 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~L 266 (593)
+...+.. |+...+..+
T Consensus 109 ~~al~~~--p~~~~~~~~ 124 (135)
T TIGR02552 109 DLAIEIC--GENPEYSEL 124 (135)
T ss_pred HHHHHhc--cccchHHHH
Confidence 9988643 665554443
No 103
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.98 E-value=0.03 Score=49.69 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH---HHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ-HHYNVLL---YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll---~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
...|..++..+. .++...+...++.+.+.. |+. ...-..| ..+... |++++|.+.|+
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~----------------g~~~~A~~~l~ 72 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQ----------------GDYDEAKAALE 72 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHC----------------CCHHHHHHHHH
Confidence 345888888884 899999999999998873 332 2222222 234443 69999999999
Q ss_pred HHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 180 QMITDKVDPNE--ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 180 ~M~~~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
........|+. ...-.|...+...|++++|+..++....... ....+......|.+.|+.++|...|+..
T Consensus 73 ~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 73 KALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99987633332 2444577888999999999999977544332 3346667789999999999999999863
No 104
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.25 Score=47.39 Aligned_cols=189 Identities=10% Similarity=0.043 Sum_probs=111.4
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHCCCCCCHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEAL-RLYDDARSNGITLSQHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~ty~~l 145 (593)
..+-++|...|+......-. +.+..+|-.....+-......+..++-+ ++.+.+......-|. ++-.+
T Consensus 45 ~y~~raylAlg~~~~~~~eI----------~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~-i~~l~ 113 (299)
T KOG3081|consen 45 VYMYRAYLALGQYQIVISEI----------KEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNL-IDLLL 113 (299)
T ss_pred HHHHHHHHHccccccccccc----------ccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhH-HHHHH
Confidence 77778888888777655544 2444344444544444444455544443 444444444332221 22211
Q ss_pred -HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 007684 146 -LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK 224 (593)
Q Consensus 146 -l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 224 (593)
...|... |++++|++...... ..+....+ +..+.+..+.|.|.+.+++|.+- -+
T Consensus 114 aa~i~~~~----------------~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 114 AAIIYMHD----------------GDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred hhHHhhcC----------------CChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 1244443 58888887776511 23333333 33345667788888888888762 23
Q ss_pred cccHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC
Q 007684 225 LRSYGPALFGFCK----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292 (593)
Q Consensus 225 ~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~ 292 (593)
..|-+-|..++.+ .+.+.+|+-+|++|-+ ...|+..+.+-...++...|++++|..+++......-.
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 4455555555543 4567788888888864 25577788888888888888888888888887764433
No 105
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.94 E-value=0.064 Score=59.28 Aligned_cols=228 Identities=9% Similarity=0.046 Sum_probs=135.0
Q ss_pred HHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 007684 54 DIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDAR 131 (593)
Q Consensus 54 ~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 131 (593)
.+..+.+.|.... ..+-....+.|.++.|.-.|...+ ...+..-..+---+..|-+.|+...|.+-|.+|.
T Consensus 196 ~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI-------~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~ 268 (895)
T KOG2076|consen 196 WLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAI-------QANPSNWELIYERSSLYQKTGDLKRAMETFLQLL 268 (895)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHH-------hcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 4444555554444 556666666666666666665444 1122222233445566777788888888888877
Q ss_pred HCCCCCCHHHHHHHH----HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCh
Q 007684 132 SNGITLSQHHYNVLL----YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD-KVDPNEATFTSVARLAVAKEDP 206 (593)
Q Consensus 132 ~~g~~p~~~ty~~ll----~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~ 206 (593)
+..-.-|..-+-.++ ..+... ++-+.|.+.++.-... +-..+...++.++..+.+...+
T Consensus 269 ~~~p~~d~er~~d~i~~~~~~~~~~----------------~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~ 332 (895)
T KOG2076|consen 269 QLDPPVDIERIEDLIRRVAHYFITH----------------NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQS 332 (895)
T ss_pred hhCCchhHHHHHHHHHHHHHHHHHh----------------hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHH
Confidence 662211212222222 223332 3557888888776552 2245666788899999999999
Q ss_pred HHHHHHHHHHHhC---------------------------CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 007684 207 EMAFDLVKQMKSF---------------------------GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE 259 (593)
Q Consensus 207 ~~A~~l~~~m~~~---------------------------g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 259 (593)
+.|......+... ++.+++...- +.-++......+....+.....+..+.|+
T Consensus 333 d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~ 411 (895)
T KOG2076|consen 333 DKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVS 411 (895)
T ss_pred HHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChh
Confidence 9998888887651 1223333311 22334444455555555666666664443
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 260 --EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 260 --~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
...|--+.++|...|+++.|..+|..+......-+...|--+-..|
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 4458888999999999999999999997754444444444444444
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.93 E-value=0.16 Score=57.73 Aligned_cols=163 Identities=10% Similarity=-0.014 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCC--CCCCcccccccHHHHHHHHHHH
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSE--NGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~--~~~~~~~~~g~~~~a~~l~~~M 181 (593)
..+-.|+..+...+++++|.++.++..+. .|+...+-.++. ++.+.+....+. .+++.+....++.-+..+...|
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 34899999999999999999999977766 566554444433 444433222111 3334444455665556666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 007684 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP 261 (593)
Q Consensus 182 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 261 (593)
...+ -+..++-.+..+|-+.|+.++|..+++++.+.. .-|...-|.+...|+.. ++++|.+++.+....
T Consensus 110 ~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------- 178 (906)
T PRK14720 110 LLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR------- 178 (906)
T ss_pred Hhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------
Confidence 6543 344578888889999999999999999998866 24477888888999988 999999998887643
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 262 ELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+...+++..+.+++.++.+
T Consensus 179 --------~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 179 --------FIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred --------HHhhhcchHHHHHHHHHHh
Confidence 3444455566666665554
No 107
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.91 E-value=0.027 Score=58.35 Aligned_cols=120 Identities=12% Similarity=0.094 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 270 (593)
.-..+|++.+...++++.|.++++++.+.. |+ ....++..+...++-.+|.+++++..... +-+...+..-.+.|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445566777788899999999999999854 54 44557888888888899999999888532 23555567777788
Q ss_pred HhcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHhcchhhhhcccc
Q 007684 271 VDAKKVDKVYEILHRLRTLVRQVSES-TFKIIEDWFDSVDAAEIGVLN 317 (593)
Q Consensus 271 ~~~g~~~~a~~~l~~m~~~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~ 317 (593)
.+.++.+.|.++.+++.+ ..|+.. ++..|...|...++.+.+.-.
T Consensus 245 l~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred HhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999999976 456544 889999999888876666433
No 108
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.90 E-value=0.065 Score=59.25 Aligned_cols=194 Identities=13% Similarity=0.075 Sum_probs=115.8
Q ss_pred CCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCC
Q 007684 77 STVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGS 155 (593)
Q Consensus 77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~ 155 (593)
|+.++|+.++.++. ...+.....|-.|-..|-+.|+.++++..+-.+-- +.|+ .--|-.+-....+
T Consensus 153 g~~eeA~~i~~EvI-------kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~---- 219 (895)
T KOG2076|consen 153 GDLEEAEEILMEVI-------KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQ---- 219 (895)
T ss_pred CCHHHHHHHHHHHH-------HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHh----
Confidence 66666666665554 33333444566666666666666666555433222 2232 2233322223333
Q ss_pred CCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc----cHHHH
Q 007684 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR----SYGPA 231 (593)
Q Consensus 156 ~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----ty~~l 231 (593)
.|.+.+|.-.|.+..+.. +++-..+--=+..|-+.|+...|.+-|.+|....-..|.. +--.+
T Consensus 220 ------------~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 220 ------------LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred ------------cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 367888888888887776 5565555566677888888888888888887632211111 12224
Q ss_pred HHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH
Q 007684 232 LFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296 (593)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~ 296 (593)
+..|...++-+.|.+.++.... .+-.-+...++.++..+.+...+++|......+......++.+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~ 352 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDS 352 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChh
Confidence 5556667777777777776554 2333455567778888888888888888877776644444443
No 109
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.057 Score=56.70 Aligned_cols=134 Identities=10% Similarity=0.029 Sum_probs=107.3
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCC----CcccHHHHHHHHHhcCCh
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS--FGIPP----KLRSYGPALFGFCKLGNT 241 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p----~~~ty~~li~~~~~~g~~ 241 (593)
.+.++.|.+.|.+..... +-|...++-+--.....+.+.+|..+|+.... ..+.+ -..+++.|..+|.+.+..
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 358999999999887654 56778888888888888999999999998762 11112 234688889999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 242 DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 242 ~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
++|...++...... +-+..++.++.-.|...|+.+.|.+.|++... +.|+..+...++..+
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 99999999987643 34778899998899999999999999999864 778887777777654
No 110
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.02 Score=54.53 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=113.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
.-.-...|+..|++++|++.... |-.......|.-|..=. .+++-|...+++|.+-
T Consensus 111 ~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~------------------~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 111 LLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKM------------------HRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcc--
Confidence 34445568999999999998876 22234444443333222 2788999999999964
Q ss_pred CCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684 187 DPNEATFTSVARLAVA----KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 262 (593)
-+..|.+-|..++.+ .+.+..|+-+|++|.++ ..|+..+-|-...++...|++++|+.++++.....- -+..+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHH
Confidence 377888878777765 46789999999999874 458888888888999999999999999999987554 35677
Q ss_pred HHHHHHHHHhcCCHH-HHHHHHHHHHH
Q 007684 263 LSALLKLSVDAKKVD-KVYEILHRLRT 288 (593)
Q Consensus 263 ~~~Ll~~~~~~g~~~-~a~~~l~~m~~ 288 (593)
+..+|......|... -..+.+.+++.
T Consensus 244 L~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 244 LANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 777877777777654 44566667655
No 111
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.67 E-value=0.024 Score=44.64 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~ 271 (593)
+..+...+...|++++|..++++..+.. |+ ...+..+...+...|++++|.+.++....... .+...+..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 4566677778888888888888887632 33 35666677788888888888888888765432 23356777777888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007684 272 DAKKVDKVYEILHRLRT 288 (593)
Q Consensus 272 ~~g~~~~a~~~l~~m~~ 288 (593)
..|+.++|...+.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 88888888888777654
No 112
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.65 E-value=0.023 Score=56.64 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=54.2
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARL-AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
..+.|-.+|.+.++.+ ..+...|-..+.. +...++.+.|.++|+...+. +.-+...+..-|.-+.+.|+.+.|..+|
T Consensus 16 g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lf 93 (280)
T PF05843_consen 16 GIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALF 93 (280)
T ss_dssp HHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 4555555555554332 1222223333332 12234444455555555432 2123344444455555555555555555
Q ss_pred HHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 249 AHMGESGVVP---EEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 249 ~~m~~~g~~p---~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+..... +.+ -...|...++.=.+.|+.+.+..+.+++.+
T Consensus 94 er~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 94 ERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555432 211 123566666666677777777777777665
No 113
>PLN02789 farnesyltranstransferase
Probab=96.50 E-value=0.34 Score=49.15 Aligned_cols=215 Identities=9% Similarity=0.035 Sum_probs=142.3
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRG-DVFEALRLYDDARSNGITLSQHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~l 145 (593)
..+-..+...++.++|...+.+++ ...+....+|+..-..+.+.| ++++++..++++.+..-+ +..+|+..
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI-------~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R 112 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVI-------RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHR 112 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH-------HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHH
Confidence 455556677778888888886665 333334445666555566666 689999999998877433 44455543
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL 225 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 225 (593)
--++.+.+ ....+++++++++|.+.. +-|..+|+...-++...|+++++++.++++.+.+. -+.
T Consensus 113 ~~~l~~l~--------------~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~ 176 (320)
T PLN02789 113 RWLAEKLG--------------PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNN 176 (320)
T ss_pred HHHHHHcC--------------chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-Cch
Confidence 32333321 012367899999998877 56888999999999999999999999999998664 345
Q ss_pred ccHHHHHHHHHhc---CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHccCCCC
Q 007684 226 RSYGPALFGFCKL---GNT----DKAYEVDAHMGESGVVPEEPELSALLKLSVDAK----KVDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 226 ~ty~~li~~~~~~---g~~----~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g----~~~~a~~~l~~m~~~~~~~~ 294 (593)
..|+.....+.+. |.. +++.+...++..... -|...|+.+...+...+ ...+|.+.+.+....+ ..+
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s 254 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNH 254 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCc
Confidence 6676666555554 222 456666656654332 35566888888887733 4466888887765522 224
Q ss_pred HHHHHHHHHHHhc
Q 007684 295 ESTFKIIEDWFDS 307 (593)
Q Consensus 295 ~~t~~~l~~~~~~ 307 (593)
......|+..|+.
T Consensus 255 ~~al~~l~d~~~~ 267 (320)
T PLN02789 255 VFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHh
Confidence 4456778887753
No 114
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.12 Score=54.77 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=86.6
Q ss_pred HHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-H-HH
Q 007684 71 LAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL-L-YV 148 (593)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l-l-~~ 148 (593)
..+.+.|.+++|.....+++ ...+.+..++..-+.+..+.+.+++|+.+.+.=. -..+++.. + .+
T Consensus 20 n~~~~~~e~e~a~k~~~Kil-------~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKA 86 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKIL-------SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKA 86 (652)
T ss_pred HHhccchHHHHHHHHHHHHH-------hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHH
Confidence 34555666666666665555 4444555556666667777777777775544311 11222222 1 13
Q ss_pred HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 007684 149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRS 227 (593)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 227 (593)
|+.-+ .++.++|+..++ |..+ |..+...-...+.+.|++++|+++|+.+.+.+. ++
T Consensus 87 Yc~Yr--------------lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd--- 143 (652)
T KOG2376|consen 87 YCEYR--------------LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD--- 143 (652)
T ss_pred HHHHH--------------cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---
Confidence 33211 246667766666 2222 223445555556677777777777777766544 22
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHH
Q 007684 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK---LSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 228 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~---~~~~~g~~~~a~~~l~~m~~ 288 (593)
|..-+.+-+-+- ..+..+- .|......| +.+|..+.+ .+...|++++|+++++....
T Consensus 144 ~d~~~r~nl~a~--~a~l~~~-~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 144 QDEERRANLLAV--AAALQVQ-LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHHHHHHHHH--HHhhhHH-HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222222111100 0011111 233333444 334444443 23356777777777766643
No 115
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.47 E-value=0.042 Score=43.19 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=69.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|.++|++..+.. +.+...+..+...+...+++++|.+.+++..+... .+..++..+...+...|+.++|.+.+
T Consensus 14 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~ 91 (100)
T cd00189 14 GDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAY 91 (100)
T ss_pred hcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHH
Confidence 69999999999988765 44557788899999999999999999999887432 33457888889999999999999999
Q ss_pred HHHHh
Q 007684 249 AHMGE 253 (593)
Q Consensus 249 ~~m~~ 253 (593)
....+
T Consensus 92 ~~~~~ 96 (100)
T cd00189 92 EKALE 96 (100)
T ss_pred HHHHc
Confidence 88764
No 116
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.061 Score=52.07 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=83.7
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH-KLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL 145 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 145 (593)
+.|-.+|-..-++.+|.+.|.+.-. ..|....|.. --..+.+++.+..|+++...|... |+...=..=
T Consensus 48 SlLgyCYY~~Q~f~~AA~CYeQL~q--------l~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lq 116 (459)
T KOG4340|consen 48 SLLGYCYYRLQEFALAAECYEQLGQ--------LHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQ 116 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------hChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHH
Confidence 5555666666666666666644330 1111222322 123345566666666666655543 122111111
Q ss_pred HHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC
Q 007684 146 LYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPK 224 (593)
Q Consensus 146 l~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~ 224 (593)
|.+-..- ..|++..+..+.++.-..| +..+.+...-...+.|+.+.|.+-|+...+ .|. -.
T Consensus 117 LqaAIkY--------------se~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy-qp 178 (459)
T KOG4340|consen 117 LQAAIKY--------------SEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY-QP 178 (459)
T ss_pred HHHHHhc--------------ccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCC-Cc
Confidence 2111110 0135555555555544322 333444444445677888888888887766 344 34
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 257 (593)
...||..+.-| +.|+.+.|.+...++.+.|++
T Consensus 179 llAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 179 LLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred hhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 56777555444 566777888888887776643
No 117
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.33 E-value=0.29 Score=52.52 Aligned_cols=31 Identities=3% Similarity=0.028 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHHHhcCC
Q 007684 377 NFASSLSNLACQREVRSDFNKFQEWLGRHGP 407 (593)
Q Consensus 377 ~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~ 407 (593)
.+...-..+-...+++.|.+-|.+.+..++.
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 3333334444555666666666666655443
No 118
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.33 E-value=0.096 Score=52.21 Aligned_cols=119 Identities=9% Similarity=0.052 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFG-FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
.+|..+++..-+.+..+.|..+|++..+.+. .+...|-..... |.-.++.+.|..+|+...+. +..+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688889999999999999999999986432 223334333333 33356777799999998753 44566778888899
Q ss_pred HHhcCCHHHHHHHHHHHHHccCCCC---HHHHHHHHHHHhcchhhh
Q 007684 270 SVDAKKVDKVYEILHRLRTLVRQVS---ESTFKIIEDWFDSVDAAE 312 (593)
Q Consensus 270 ~~~~g~~~~a~~~l~~m~~~~~~~~---~~t~~~l~~~~~~~~~~~ 312 (593)
+.+.|+.+.|..+|++.... +... ...|...+..=...|..+
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~ 124 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLE 124 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998764 2222 235555555444444443
No 119
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.26 E-value=0.35 Score=48.40 Aligned_cols=139 Identities=17% Similarity=0.254 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC---CCCHHHHHHH
Q 007684 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV---DPNEATFTSV 196 (593)
Q Consensus 120 ~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~---~p~~~ty~~l 196 (593)
++..+.+++.|.+.|.+-+..+|-+......... .+ -..-...+|.++|+.|++... .++..++.+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~-~~---------~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~l 147 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE-KE---------DYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAAL 147 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc-cc---------cHHHHHHHHHHHHHHHHHhCccccCccchhHHHH
Confidence 5566788999999999988887776544443310 00 001267889999999998652 4667778888
Q ss_pred HHHHHhcCC----hHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684 197 ARLAVAKED----PEMAFDLVKQMKSFGIPPKLR-SYGPALFGFCKLGN---TDKAYEVDAHMGESGVVPEEPELSALLK 268 (593)
Q Consensus 197 i~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 268 (593)
+.. ...+ .+.+..+|+.+.+.|+...-. -+-+-|-+++.... +.++.++++.+.+.|+++....|..+.-
T Consensus 148 LA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 148 LAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred Hhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 665 3333 356788888888888865532 23333444443222 4478899999999999988888776544
Q ss_pred HH
Q 007684 269 LS 270 (593)
Q Consensus 269 ~~ 270 (593)
..
T Consensus 226 La 227 (297)
T PF13170_consen 226 LA 227 (297)
T ss_pred HH
Confidence 33
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.23 E-value=0.15 Score=52.82 Aligned_cols=155 Identities=10% Similarity=-0.011 Sum_probs=116.8
Q ss_pred HHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH
Q 007684 72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL-YVCS 150 (593)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll-~~~~ 150 (593)
.+-..|++++|+..+++.. ...+.+........+.+.+.++..+|.+.++.+... .|+.......+ .++.
T Consensus 315 ~~~~~~~~d~A~~~l~~L~-------~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLI-------AAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHhcccchHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 4557889999999997755 444455556777888899999999999999999987 67753333333 3666
Q ss_pred ccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH
Q 007684 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230 (593)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 230 (593)
+. |+.++|+.+++...... +-|...|..|..+|...|+..+|..-..++
T Consensus 386 ~~----------------g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~-------------- 434 (484)
T COG4783 386 KG----------------GKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG-------------- 434 (484)
T ss_pred hc----------------CChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH--------------
Confidence 65 69999999999988776 778999999999999999999888766544
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 007684 231 ALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPELSALLKLS 270 (593)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~Ll~~~ 270 (593)
|...|+++.|........+.. -.|+..-+..-|...
T Consensus 435 ----~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 435 ----YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred ----HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 556889999998888776532 234444455555544
No 121
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.21 E-value=0.16 Score=56.87 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=82.1
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 247 (593)
.|.+.+|++-|-+ .-|...|..+++.+.+.|.+|+-.+.+...++..-.|... +.+|.+|++.+++.+.+++
T Consensus 1117 ~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 3577777766633 2477889999999999999999999998777776667655 4799999999999877776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
.. -||......+.+-|...|.++.|.-+|...
T Consensus 1189 i~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1189 IA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred hc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 54 288888888888888888888887766654
No 122
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.19 E-value=0.11 Score=43.74 Aligned_cols=97 Identities=12% Similarity=-0.036 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK----LRSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPELS 264 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~ 264 (593)
.++-.+...+.+.|++++|.+.++++.... |+ ...+..+..++.+.|+++.|...|+.+.... .......+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 345667777888899999999998887632 33 2345567888888899999999998887532 111244567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
.+..++.+.|+.++|...++++.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHH
Confidence 7777888888999999888888774
No 123
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.19 E-value=0.056 Score=55.87 Aligned_cols=96 Identities=14% Similarity=0.127 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l 247 (593)
|++++|++.|++..+.. +-+...|..+..+|.+.|++++|+..+++.... .|+ ...|..+..+|...|++++|...
T Consensus 16 ~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 16 DDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68999999999998876 557778888999999999999999999999874 354 56788888899999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH
Q 007684 248 DAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
|++..+. .|+......++..
T Consensus 93 ~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 93 LEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHh--CCCCHHHHHHHHH
Confidence 9998853 4666655555433
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.19 E-value=0.16 Score=46.49 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSAL 266 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~L 266 (593)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|+.++|.+.+++.... .|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34678888888999999999999999986432222 357888899999999999999999998864 343 4446666
Q ss_pred HHHHHhcCC--------------HHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684 267 LKLSVDAKK--------------VDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 267 l~~~~~~g~--------------~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~ 309 (593)
..++...|+ +++|.+++++..+ .++..+..+..|+...+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR----LAPNNYIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh----hCchhHHHHHHHHHhcC
Confidence 667766665 3455555555544 55666777777775433
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.15 E-value=0.14 Score=53.58 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=94.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
..+.-+|...|....+..-+..|..+|.++++.+..+ .+..++++|.-++.. +.+-|+++|+
T Consensus 363 ~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk-----------------D~~~AfrIFe 425 (656)
T KOG1914|consen 363 IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK-----------------DKETAFRIFE 425 (656)
T ss_pred cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC-----------------ChhHHHHHHH
Confidence 3445557778888777777888888888888777666 677777777766653 6777888887
Q ss_pred H-HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 180 Q-MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 180 ~-M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
- |+.-| -+..--...+.-+.+.++-..|..+|++....++.|+ ...|..+|.-=..-|+++.+.++-+++.
T Consensus 426 LGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5 44333 2333345566777777888888888888877766655 3677777777777888877777777664
No 126
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.13 E-value=0.055 Score=46.59 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 268 (593)
|+.++.++|-++++.|+++....+++..= |+.++...= .+. --....+.|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~~---------~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKKK---------EGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCccc---------cCc---------cCCCCCCCCCHHHHHHHHH
Confidence 57788999999999999999888887653 222221000 000 1113456788888888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHh
Q 007684 269 LSVDAKKVDKVYEILHRLRT-LVRQVSESTFKIIEDWFD 306 (593)
Q Consensus 269 ~~~~~g~~~~a~~~l~~m~~-~~~~~~~~t~~~l~~~~~ 306 (593)
+|+..|++..|+++++...+ -++..+..++..|+.|..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888777654 446667777777777773
No 127
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=0.61 Score=48.26 Aligned_cols=164 Identities=16% Similarity=0.110 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQH-HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
...+-.-+.+=.++..+..|..+++..... -|-+. .|-.-+..=.. .|++..|..+|+.-.
T Consensus 107 itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~----------------LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 107 ITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEM----------------LGNIAGARQIFERWM 168 (677)
T ss_pred chHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHH----------------hcccHHHHHHHHHHH
Confidence 334555666677788888888888887765 33321 12111221111 257888999998766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-CCC-CCCH
Q 007684 183 TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGV-VPEE 260 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~-~p~~ 260 (593)
. ..|+..++.+.|+.=.+-..++.|..++++..- +.|++.+|--...-=-++|.+.-|..+|+...+ -|- .-++
T Consensus 169 ~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 169 E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 4 479999999999999999999999999999876 458988888877888889999999999987664 221 1122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 261 PELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
..+.++...=..+..+++|.-+|+...+.
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444567788888888887763
No 128
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.04 E-value=2 Score=46.46 Aligned_cols=262 Identities=11% Similarity=-0.001 Sum_probs=156.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
+++.--..|.+.+.++-|..+|....+.- .-+...|.....+=.. .|..++-..+|++....-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~----------------hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS----------------HGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh----------------cCcHHHHHHHHHHHHHhC
Confidence 35555666777777777777777766552 1133444333332222 367788888888877653
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSA 265 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 265 (593)
+-.+.-+-...+-+-..|++..|..++.+.-+..- -+...|-..+..-.....++.|..+|.+... ..|++..|--
T Consensus 581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mK 656 (913)
T KOG0495|consen 581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMK 656 (913)
T ss_pred -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHH
Confidence 44555666666677778888888888888877542 2466788888888888888888888888764 4466666665
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccccccCCc
Q 007684 266 LLKLSVDAKKVDKVYEILHRLRTLVRQVSES-TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQGWLGSGK 344 (593)
Q Consensus 266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~~~~~~~ 344 (593)
-+....-.++.++|.+++++..+ ..|+-. .|-.+=..+.+.+.++.+ +++-..+-...+++. .-
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~a---------R~aY~~G~k~cP~~i----pL 721 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMA---------REAYLQGTKKCPNSI----PL 721 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHH---------HHHHHhccccCCCCc----hH
Confidence 55555667888888888877665 233332 222232333333322211 111111111111110 01
Q ss_pred eEEEEecccCCCCcCcccccccccC----CCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 345 WRVERTQIDENGVCCSCNERLVCID----IDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 345 ~~v~~~~i~~~g~c~~~~~al~~~~----l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
|. .+..-..+-+..-.|...++ -.|.+...|...|..=.+.|..+.|..+.-+.+..++
T Consensus 722 Wl---lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 722 WL---LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HH---HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 10 01111111223334444444 4577888999999999999999999998888887654
No 129
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.00 E-value=0.0095 Score=47.33 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVD-PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 247 (593)
|+++.|+.+|+++.+.... ++...+-.+..+|.+.|++++|.+++++ .+.+. .+....-.+..+|.+.|+.++|.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5677777777777665421 2333444467777777777777777766 22111 1112222345666677777777777
Q ss_pred HHH
Q 007684 248 DAH 250 (593)
Q Consensus 248 ~~~ 250 (593)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 130
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.97 E-value=0.41 Score=51.91 Aligned_cols=155 Identities=10% Similarity=0.041 Sum_probs=104.9
Q ss_pred CCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--------
Q 007684 133 NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKE-------- 204 (593)
Q Consensus 133 ~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g-------- 204 (593)
.+.+.|...|...+.+...... ...+...+|.++|++..+.. +-+...|..+..++....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~-----------~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~ 398 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNS-----------GDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEK 398 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHH
Confidence 3456788999998885433210 01246889999999998865 333445555544443321
Q ss_pred ChHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007684 205 DPEMAFDLVKQMKSF-GIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l 283 (593)
+++.+.+..++.... ....+...|..+...+...|++++|...+++..+.+ |+...|..+..++...|+.++|.+.+
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233344444443332 122344678877666777899999999999998766 78888999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHHHH
Q 007684 284 HRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 284 ~~m~~~~~~~~~~t~~~l~~ 303 (593)
.+... ..|...||-...+
T Consensus 477 ~~A~~--L~P~~pt~~~~~~ 494 (517)
T PRK10153 477 STAFN--LRPGENTLYWIEN 494 (517)
T ss_pred HHHHh--cCCCCchHHHHHh
Confidence 98865 5676667654444
No 131
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=1.1 Score=43.69 Aligned_cols=165 Identities=11% Similarity=0.028 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
+..+.+..-...-+.|+.++|.+-|....+-|---....||.-|..|.+. +...|++...++.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~-----------------qyasALk~iSEIi 205 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR-----------------QYASALKHISEII 205 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh-----------------hHHHHHHHHHHHH
Confidence 34445555556678999999999999988775444567899999999885 8899999999988
Q ss_pred hCCCC-------------CCHH--------HHHHHHHH-------HHhcCChHHHHHHHHHHHh-CCCCCCcccHHHHHH
Q 007684 183 TDKVD-------------PNEA--------TFTSVARL-------AVAKEDPEMAFDLVKQMKS-FGIPPKLRSYGPALF 233 (593)
Q Consensus 183 ~~g~~-------------p~~~--------ty~~li~~-------~~~~g~~~~A~~l~~~m~~-~g~~p~~~ty~~li~ 233 (593)
++|++ ||.. .-+.++.+ +.+.|+.+.|.+-+-.|-- ..-..|.+|...+.-
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 87753 2221 12333333 4567888888888888742 112234455443322
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 234 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
.= -.+++-+..+=+.-+.+.+-- -..||..++-.||++.-++-|-.++.+-
T Consensus 286 ~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 286 MN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 21 133444445545555543322 2356888888888888888887766543
No 132
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.92 E-value=0.44 Score=56.01 Aligned_cols=204 Identities=10% Similarity=0.025 Sum_probs=114.3
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC--C-C
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP-EGVLRHKLDMCSKRGDVFEALRLYDDARSN----GIT--L-S 138 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~ 138 (593)
+.+...+...|++++|...+.+.+. ..+ ..+.... ...+..+...+...|++++|...+++..+. |.. + .
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~-~~~-~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQ-MAR-QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-HHh-hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4555566778888888888766552 111 1111111 123555666777889999988888776542 221 1 1
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684 139 QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD--KVDP--NEATFTSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 139 ~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~--g~~p--~~~ty~~li~~~~~~g~~~~A~~l~~ 214 (593)
...+..+-..+... |++++|.+.+++.... ...+ ...++..+...+...|+.+.|.+.++
T Consensus 573 ~~~~~~la~~~~~~----------------G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 573 EFLLRIRAQLLWEW----------------ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHHHHHHHh----------------cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12222222223332 5888888888876542 1112 23345556667778899999988888
Q ss_pred HHHhCCCC-CCcccH-----HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 007684 215 QMKSFGIP-PKLRSY-----GPALFGFCKLGNTDKAYEVDAHMGESGVVPEE---PELSALLKLSVDAKKVDKVYEILHR 285 (593)
Q Consensus 215 ~m~~~g~~-p~~~ty-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~Ll~~~~~~g~~~~a~~~l~~ 285 (593)
+.....-. .....+ ...+..+...|+.+.|.+++............ ..+..+..++...|+.++|...+.+
T Consensus 637 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~ 716 (903)
T PRK04841 637 RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEE 716 (903)
T ss_pred HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87542100 000111 11224445678888888887765532211111 1134566667778888888887777
Q ss_pred HHH
Q 007684 286 LRT 288 (593)
Q Consensus 286 m~~ 288 (593)
..+
T Consensus 717 al~ 719 (903)
T PRK04841 717 LNE 719 (903)
T ss_pred HHH
Confidence 755
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.92 E-value=0.28 Score=55.87 Aligned_cols=219 Identities=11% Similarity=0.042 Sum_probs=128.3
Q ss_pred cCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 007684 58 NRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGI 135 (593)
Q Consensus 58 ~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 135 (593)
...+|+-.. ..|+..|-..+++++|..+....+ ...+.....|-.+...+.+.++...|..+ .+...
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l-------~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-- 92 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHL-------KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-- 92 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--
Confidence 345555555 788888888888888888774333 22222233344444467777777776666 22222
Q ss_pred CCCHHHHHHHHHHHHccCCCCCCC----CCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007684 136 TLSQHHYNVLLYVCSCKCGSESSE----NGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211 (593)
Q Consensus 136 ~p~~~ty~~ll~~~~~~~~~~~~~----~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 211 (593)
.+...-|+..-..|...++..... .....|-+.|+.++|.++++++.+.. +-|..+.|.+...|+.. ++++|.+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHH
Confidence 111111111111111110000000 00012223479999999999999988 67888999999999999 9999999
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-------------------CCCCCHHHHHHHHHHHHh
Q 007684 212 LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES-------------------GVVPEEPELSALLKLSVD 272 (593)
Q Consensus 212 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-------------------g~~p~~~t~~~Ll~~~~~ 272 (593)
++.+.... |....++.++.+++.++... |..--..++--|-..|..
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~ 235 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA 235 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh
Confidence 99988764 33344444444444444432 333334455556677888
Q ss_pred cCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 273 AKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 273 ~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
..+++++..+|+.+.+..-. +.....-|+..|
T Consensus 236 ~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y 267 (906)
T PRK14720 236 LEDWDEVIYILKKILEHDNK-NNKAREELIRFY 267 (906)
T ss_pred hhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHH
Confidence 88999999999999874333 222333444444
No 134
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.12 Score=54.33 Aligned_cols=100 Identities=20% Similarity=0.180 Sum_probs=81.0
Q ss_pred ccHHHHHHHHHHHHhC----C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh
Q 007684 169 LGLKRGFEIFQQMITD----K--VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTD 242 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~----g--~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 242 (593)
+.+.+|...|+.-++. + ..--+.++++|..+|.+.+..++|+..+++..... +-+..+|.++.-.|...|+++
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChH
Confidence 4788999999876631 1 11245579999999999999999999999987642 246789999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPELSALLKLSV 271 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~ 271 (593)
.|.+.|.+.+ .+.|+..+-..++..+.
T Consensus 507 ~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 507 KAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 9999999877 67799888887777553
No 135
>PLN02789 farnesyltranstransferase
Probab=95.84 E-value=0.68 Score=46.96 Aligned_cols=185 Identities=12% Similarity=0.051 Sum_probs=121.3
Q ss_pred ccccch--HHHHHHHhcCC-CcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCC
Q 007684 61 SADLTT--GLCTLAFSKKS-TVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGD--VFEALRLYDDARSNGI 135 (593)
Q Consensus 61 ~~~~~~--~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~ 135 (593)
.|+..+ +.--..+...| .+++++..+.+++ ...+.+..+|+..--.+.+.|+ .++++.+++.+.+..-
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i-------~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dp 139 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVA-------EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDA 139 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH-------HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCc
Confidence 355554 33333344445 4677777776655 3344455556654444455554 3678999988887743
Q ss_pred CCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh----HH
Q 007684 136 TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK---EDP----EM 208 (593)
Q Consensus 136 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~---g~~----~~ 208 (593)
+ |.++|+-.--++... |+++++++.++++.+.+ +-|..+|+...-.+.+. |.. +.
T Consensus 140 k-Ny~AW~~R~w~l~~l----------------~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 140 K-NYHAWSHRQWVLRTL----------------GGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred c-cHHHHHHHHHHHHHh----------------hhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHH
Confidence 2 677777766666665 58999999999999887 55677777776666554 222 46
Q ss_pred HHHHHHHHHhCCCCCC-cccHHHHHHHHHhc----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684 209 AFDLVKQMKSFGIPPK-LRSYGPALFGFCKL----GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDA 273 (593)
Q Consensus 209 A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~ 273 (593)
+.+...++... .|+ ...|+-+...+... +...+|.+++.+....++ .+...+..|++.|+..
T Consensus 202 el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 202 ELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhh
Confidence 67777666653 355 67888888888773 344668888888765432 3566688899999863
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.76 Score=43.87 Aligned_cols=161 Identities=10% Similarity=0.020 Sum_probs=121.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
|..++.+....|+.+.|...++++... -|+..-...|=...... .|+.++|+++|+.+.+..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa---------------~~~~~~A~e~y~~lL~dd- 116 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEA---------------TGNYKEAIEYYESLLEDD- 116 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH---------------hhchhhHHHHHHHHhccC-
Confidence 888888889999999999999998877 35543333332233333 268999999999999988
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSA 265 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 265 (593)
+-|.++|--=+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.--+++|.-. .|.... +..
T Consensus 117 pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~r 193 (289)
T KOG3060|consen 117 PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQR 193 (289)
T ss_pred cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHH
Confidence 677788877666677778877888887777664 5578999999999999999999999999999853 354444 556
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHH
Q 007684 266 LLKLSVDAK---KVDKVYEILHRLRT 288 (593)
Q Consensus 266 Ll~~~~~~g---~~~~a~~~l~~m~~ 288 (593)
+-+.+--.| +.+-+.++|.+..+
T Consensus 194 lae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 194 LAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666554444 56667777777766
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.74 E-value=0.34 Score=40.62 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=23.3
Q ss_pred cHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 170 GLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
++++|...|+.+..... +....++..+..++.+.|+.++|.+.++++.+
T Consensus 54 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 54 KYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred cHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 55555555555543221 11123344444555555555555555555544
No 138
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.70 E-value=0.14 Score=55.41 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=109.4
Q ss_pred CCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 101 ESPEGV-LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 101 ~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
.+|... -..+...+.+.|-..+|..+|+++... --+|..|... |+..+|.++..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erlemw---------~~vi~CY~~l----------------g~~~kaeei~~ 448 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLEMW---------DPVILCYLLL----------------GQHGKAEEINR 448 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHH---------HHHHHHHHHh----------------cccchHHHHHH
Confidence 344443 556677788899999999999976543 3345555554 47778888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC---------------------C-CCcccHHHHH
Q 007684 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF-----GI---------------------P-PKLRSYGPAL 232 (593)
Q Consensus 180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-----g~---------------------~-p~~~ty~~li 232 (593)
+-.+ -+||..-|..+.+..-...-+++|+++.+..... |. . .-..+|=.+-
T Consensus 449 q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G 526 (777)
T KOG1128|consen 449 QELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLG 526 (777)
T ss_pred HHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhcc
Confidence 7776 2788888888887776666677777777654221 00 0 1123444445
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 007684 233 FGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLV 290 (593)
Q Consensus 233 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~ 290 (593)
.++.+.+++..|.+.|..-. -..||-.+ ||+|-.+|.+.|.-.+|...+.+..+..
T Consensus 527 ~~ALqlek~q~av~aF~rcv--tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCV--TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHh--hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 55556777777777777665 34466555 8888888888888888888888876643
No 139
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.69 E-value=0.23 Score=45.21 Aligned_cols=115 Identities=11% Similarity=0.003 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHH
Q 007684 171 LKRGFEIFQQMI-TDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 171 ~~~a~~l~~~M~-~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l 247 (593)
...+.+.+..+. ..+..--...|..+...+...|++++|...|++.......|. ..+|..+-..|...|+.++|.+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 344444455553 333223345677888888889999999999999976432221 34788899999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHHH
Q 007684 248 DAHMGESGVVPEEPELSALLKLSV-------DAKKVDKVYEILHRL 286 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll~~~~-------~~g~~~~a~~~l~~m 286 (593)
++...... +....++..+...+. ..|+.+.|...+++.
T Consensus 95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99988642 122344666666666 777877666655544
No 140
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.66 E-value=0.14 Score=44.08 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=37.9
Q ss_pred CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 007684 219 FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSV 271 (593)
Q Consensus 219 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~ 271 (593)
..+.|+.++-.+++.+|+..|++..|+++.+...+ -++..+...|..|++-+.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34567777777788888888888888887777653 567767777777777543
No 141
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.50 E-value=0.34 Score=50.15 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=78.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC
Q 007684 110 KLDMCSKRGDVFEALRLYDDARSNGITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP 188 (593)
Q Consensus 110 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p 188 (593)
....+...|++++|+++|+++.+. .|+ ...|..+-.+|... |++++|+..+++..... +.
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~----------------g~~~eAl~~~~~Al~l~-P~ 68 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKL----------------GNFTEAVADANKAIELD-PS 68 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHhC-cC
Confidence 345677889999999999999987 343 44454444466664 69999999999998876 45
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA 231 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 231 (593)
+...|..+..+|...|++++|...|++..+ +.|+......+
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~ 109 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKL 109 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 777899999999999999999999999987 44665444433
No 142
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.44 E-value=0.64 Score=42.48 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLS--QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD 184 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~ 184 (593)
+..+...+...|++++|...|++..+.+..+. ...+..+-.++... |+.++|.+.+++....
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASN----------------GEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHh
Confidence 55555566666777777777776665432221 12333333344443 4666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEM 208 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~ 208 (593)
. +-+...+..+...+...|+...
T Consensus 102 ~-p~~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 102 N-PKQPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred C-cccHHHHHHHHHHHHHcCChHh
Confidence 3 2234455555555555555433
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.40 E-value=0.63 Score=50.52 Aligned_cols=151 Identities=9% Similarity=-0.007 Sum_probs=100.8
Q ss_pred cCCCCHHHHHHHHHHHHc--C---CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCCCCCCCCCCcccccccHH
Q 007684 99 RRESPEGVLRHKLDMCSK--R---GDVFEALRLYDDARSNGITLSQ-HHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172 (593)
Q Consensus 99 ~~~~~~~~~~~li~~~~~--~---g~~~~A~~l~~~m~~~g~~p~~-~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 172 (593)
....+...|...+.+... . ++...|.++|++..+. .|+- ..|..+..++...... .. ....++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~-------~~-~~~~~l~ 401 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQ-------QP-LDEKQLA 401 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhc-------CC-ccHHHHH
Confidence 334455668888877443 2 3478999999999987 5664 3333332222221100 00 1112455
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 173 RGFEIFQQMITD-KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 173 ~a~~l~~~M~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
.+.+..++.... ....+..+|.++.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.+++.
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566665554442 234455778888777778899999999999999854 78889999999999999999999999987
Q ss_pred HhCCCCCCHHHH
Q 007684 252 GESGVVPEEPEL 263 (593)
Q Consensus 252 ~~~g~~p~~~t~ 263 (593)
.. +.|...||
T Consensus 480 ~~--L~P~~pt~ 489 (517)
T PRK10153 480 FN--LRPGENTL 489 (517)
T ss_pred Hh--cCCCCchH
Confidence 74 33555554
No 144
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.99 Score=46.00 Aligned_cols=75 Identities=9% Similarity=0.041 Sum_probs=52.7
Q ss_pred HHhhcCCccccch-HHHHHHHhcCCCccc--CCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007684 54 DIKQNRFSADLTT-GLCTLAFSKKSTVNE--SSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA 130 (593)
Q Consensus 54 ~m~~~g~~~~~~~-~~li~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 130 (593)
.|-...++|...+ ..-|.++++.-..+. |..++ .....+.....+......+-..+...|+.++|...|+..
T Consensus 184 ~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~-----l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~ 258 (564)
T KOG1174|consen 184 VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTF-----LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSST 258 (564)
T ss_pred hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHH-----HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHH
Confidence 4445556666666 777777776554444 44444 333344556667777999999999999999999999988
Q ss_pred HHC
Q 007684 131 RSN 133 (593)
Q Consensus 131 ~~~ 133 (593)
+..
T Consensus 259 ~~~ 261 (564)
T KOG1174|consen 259 LCA 261 (564)
T ss_pred hhC
Confidence 766
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.37 E-value=0.16 Score=49.53 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=71.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l 247 (593)
+++++|+..|.+..+.. +-|.+-|..=..+|++.|.++.|++=-+.... +-|. .++|..|-.+|...|++++|.+.
T Consensus 95 ~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred hhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 58888888888887765 55667778888888888888888877776665 3355 57888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHH
Q 007684 248 DAHMGESGVVPEEPELSALL 267 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll 267 (593)
|++.+ .+.|+-.+|-.=|
T Consensus 172 ykKaL--eldP~Ne~~K~nL 189 (304)
T KOG0553|consen 172 YKKAL--ELDPDNESYKSNL 189 (304)
T ss_pred HHhhh--ccCCCcHHHHHHH
Confidence 88776 4567777664433
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.36 E-value=0.026 Score=44.74 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=57.6
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 007684 203 KEDPEMAFDLVKQMKSFGI-PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVY 280 (593)
Q Consensus 203 ~g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~ 280 (593)
.|+++.|..+++++.+..- .|+...+-.+..+|.+.|+.++|.++++. . ...++. ...-.+..++.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~--~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L--KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H--THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h--CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999987432 12333444478999999999999999988 3 222333 33334577888999999999
Q ss_pred HHHHH
Q 007684 281 EILHR 285 (593)
Q Consensus 281 ~~l~~ 285 (593)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99876
No 147
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.31 E-value=0.59 Score=50.72 Aligned_cols=79 Identities=11% Similarity=0.159 Sum_probs=60.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007684 197 ARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276 (593)
Q Consensus 197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 276 (593)
|.+......|.+|+.+++.+...+. ...-|.-+..-|+..|+++.|+++|.+- + .++--|..|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccH
Confidence 4455667888889999888877543 3345788888899999999999998764 2 256678889999999
Q ss_pred HHHHHHHHHH
Q 007684 277 DKVYEILHRL 286 (593)
Q Consensus 277 ~~a~~~l~~m 286 (593)
+.|.++-.+.
T Consensus 808 ~da~kla~e~ 817 (1636)
T KOG3616|consen 808 EDAFKLAEEC 817 (1636)
T ss_pred HHHHHHHHHh
Confidence 9888776554
No 148
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.28 E-value=0.62 Score=41.13 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----ccCCCCHHHHHHH
Q 007684 228 YGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT-----LVRQVSESTFKII 301 (593)
Q Consensus 228 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~-----~~~~~~~~t~~~l 301 (593)
...++..+...|+.++|.++.+.+.... +.++..|..+|.+|...|+...|.+.|+++++ .|+.|++.|-...
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 3445666677999999999999998644 24778899999999999999999999988743 6888988876544
No 149
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.27 E-value=0.15 Score=49.09 Aligned_cols=89 Identities=21% Similarity=0.206 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC----------------hhHHH
Q 007684 187 DPNEATFTSVARLAVAK-----EDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN----------------TDKAY 245 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~----------------~~~A~ 245 (593)
..|-.+|-+.+..+... +.+|-....++.|++.|+.-|+.+|+.||+.+-+..- -+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 56777888888777653 6678888889999999999999999999998866432 24478
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684 246 EVDAHMGESGVVPEEPELSALLKLSVDAKK 275 (593)
Q Consensus 246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 275 (593)
+++++|+.+|+.||-.+-..|++++.+.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 899999999999999999999999988774
No 150
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.26 E-value=0.041 Score=41.46 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
.|++++|+++|+++.... +-+......+..+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777777777766554 33555566666777777777777777766655
No 151
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.23 E-value=0.61 Score=42.40 Aligned_cols=94 Identities=15% Similarity=0.075 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSNGITLS--QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
..+..+...+...|++++|+..|++.......+. ..+|..+-.++... |+.++|++.+++..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~----------------g~~~eA~~~~~~Al 99 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN----------------GEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHH
Confidence 3477778888889999999999999876632221 23555554456654 69999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHHH
Q 007684 183 TDKVDPNEATFTSVARLAV-------AKEDPEMAFDLVKQ 215 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~~~~-------~~g~~~~A~~l~~~ 215 (593)
... +....++..+...+. ..|+++.|...+++
T Consensus 100 ~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 100 ERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 653 334456666666666 56666655544443
No 152
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.23 E-value=1.4 Score=51.42 Aligned_cols=170 Identities=13% Similarity=0.029 Sum_probs=128.4
Q ss_pred hcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHH
Q 007684 98 ARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFE 176 (593)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 176 (593)
.....+-.+|..|...|.+.+..++|-++++.|.+. | -....|...+....+.+ .-+.|.+
T Consensus 1524 cqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~n----------------e~~aa~~ 1585 (1710)
T KOG1070|consen 1524 CQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQN----------------EAEAARE 1585 (1710)
T ss_pred HHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhccc----------------HHHHHHH
Confidence 345666777999999999999999999999999866 4 35567777777555543 6788899
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 177 IFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 177 l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
++.+..+.=.+- -....+-.+..-.+.|+.+.+..+|+.....- |. ...|+..|+.=.++|+.+.+..+|++....
T Consensus 1586 lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1586 LLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 998877643111 12234455566678999999999999988632 43 678999999999999999999999999998
Q ss_pred CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 255 GVVPEEP--ELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 255 g~~p~~~--t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
++.|--. .|...+..=-+.|+-+.++.+=.+..
T Consensus 1664 ~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1664 KLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred CCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 8877543 36777776666777666655544443
No 153
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.21 E-value=0.68 Score=49.07 Aligned_cols=143 Identities=12% Similarity=0.057 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684 120 VFEALRLYDDAR-SNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVAR 198 (593)
Q Consensus 120 ~~~A~~l~~~m~-~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~ 198 (593)
+....++|-++. +.+.++|...+..|=-+|--. |.+++|++.|+...... +-|...||-|-.
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls----------------~efdraiDcf~~AL~v~-Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS----------------GEFDRAVDCFEAALQVK-PNDYLLWNRLGA 472 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc----------------hHHHHHHHHHHHHHhcC-CchHHHHHHhhH
Confidence 445555555554 556445555555554444443 48999999999988876 567788999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh---CC------CCCCHHHHHHHHH
Q 007684 199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE---SG------VVPEEPELSALLK 268 (593)
Q Consensus 199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g------~~p~~~t~~~Ll~ 268 (593)
.++...+-++|...|.+.++ +.|. +++.-.|.-.|...|.+++|.+.|-..+. .+ ..++...|.+|=.
T Consensus 473 tLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~ 550 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL 550 (579)
T ss_pred HhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence 99999999999999999987 6788 56655688889999999999887766542 21 1234456776666
Q ss_pred HHHhcCCHHHHHH
Q 007684 269 LSVDAKKVDKVYE 281 (593)
Q Consensus 269 ~~~~~g~~~~a~~ 281 (593)
++.-.++.|-+.+
T Consensus 551 als~~~~~D~l~~ 563 (579)
T KOG1125|consen 551 ALSAMNRSDLLQE 563 (579)
T ss_pred HHHHcCCchHHHH
Confidence 6666666654443
No 154
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.17 E-value=3.2 Score=42.44 Aligned_cols=82 Identities=13% Similarity=0.059 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHH-HH
Q 007684 117 RGDVFEALRLYDDARSNG-ITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT-FT 194 (593)
Q Consensus 117 ~g~~~~A~~l~~~m~~~g-~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t-y~ 194 (593)
.++...|..++-.+.... ++-|++....+-.++... |+.++|+..|++....+ |+..+ .-
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~----------------Gdn~~a~~~Fe~~~~~d--py~i~~MD 270 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN----------------GDYFQAEDIFSSTLCAN--PDNVEAMD 270 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh----------------cCchHHHHHHHHHhhCC--hhhhhhHH
Confidence 355555555555444433 444666666666666665 58888888888776433 32221 11
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 007684 195 SVARLAVAKEDPEMAFDLVKQM 216 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m 216 (593)
...-.+...|+.+....+...+
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHH
Confidence 1122234455555544444444
No 155
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.11 E-value=0.37 Score=42.88 Aligned_cols=83 Identities=10% Similarity=-0.072 Sum_probs=49.1
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|..+|+-+..-. +-+..-|-.|.-.+-..|++++|...|........ -|.+.|=.+-.++...|+.+.|.+-|
T Consensus 49 G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A~~aF 126 (157)
T PRK15363 49 KEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYAIKAL 126 (157)
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 46666666666665543 23344455555556666666666666666665432 23455555666666666666666666
Q ss_pred HHHHh
Q 007684 249 AHMGE 253 (593)
Q Consensus 249 ~~m~~ 253 (593)
+....
T Consensus 127 ~~Ai~ 131 (157)
T PRK15363 127 KAVVR 131 (157)
T ss_pred HHHHH
Confidence 65543
No 156
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.07 E-value=0.16 Score=54.86 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=77.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..+.+-|+..|.++.|+++|. ....++-.|.+|.++|++..|.++-++.... ......|-+--
T Consensus 769 ~~iadhyan~~dfe~ae~lf~---------------e~~~~~dai~my~k~~kw~da~kla~e~~~~--e~t~~~yiaka 831 (1636)
T KOG3616|consen 769 GEIADHYANKGDFEIAEELFT---------------EADLFKDAIDMYGKAGKWEDAFKLAEECHGP--EATISLYIAKA 831 (1636)
T ss_pred hHHHHHhccchhHHHHHHHHH---------------hcchhHHHHHHHhccccHHHHHHHHHHhcCc--hhHHHHHHHhH
Confidence 677778888888888888771 1234677788888888888888876654322 21222222211
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 226 (593)
.-.- ++|++.+|.++|-... .|+. .|..|-+.|..|..+++.++-....+ ..
T Consensus 832 edld----------------ehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~d 883 (1636)
T KOG3616|consen 832 EDLD----------------EHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HD 883 (1636)
T ss_pred HhHH----------------hhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hH
Confidence 1111 1356666666553332 3443 34566666666666666654321101 12
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
|--.+..-|-..|++..|++-|-+.
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhh
Confidence 3344455555566666666555443
No 157
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.99 E-value=0.78 Score=40.83 Aligned_cols=95 Identities=8% Similarity=-0.081 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
...-.+...+...|++++|.++|+.+.... |. ..-|-.|-.++-..|++++|.+.|........ -|...+-.+-.+
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 344455666778999999999999998743 54 34455577888889999999999999886663 355668888999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007684 270 SVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 270 ~~~~g~~~~a~~~l~~m~~ 288 (593)
+...|+.+.|.+.|+...+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988766
No 158
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.98 E-value=1.2 Score=38.92 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=87.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
...+|..+.+.+....+..+++.+...+. .+...+|.++.+|++. +..+.++.+..
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~-----------------~~~~ll~~l~~------ 65 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY-----------------DPQKEIERLDN------ 65 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH-----------------CHHHHHHHHHh------
Confidence 35677777778889999999998887763 6777888888888875 44555555553
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL-GNTDKAYEVDAHMGESGVVPEEPELSA 265 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ 265 (593)
..+......+++.|-+.+.++++.-++.++.. |..++..+... ++.+.|.+...+- -+...|..
T Consensus 66 ~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~ 130 (140)
T smart00299 66 KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAE 130 (140)
T ss_pred ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHH
Confidence 12334455588888888888888888876633 33355555555 7788888877762 24556777
Q ss_pred HHHHHHh
Q 007684 266 LLKLSVD 272 (593)
Q Consensus 266 Ll~~~~~ 272 (593)
++..+..
T Consensus 131 ~~~~~l~ 137 (140)
T smart00299 131 VLKALLD 137 (140)
T ss_pred HHHHHHc
Confidence 7766643
No 159
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=94.94 E-value=4.5 Score=40.44 Aligned_cols=381 Identities=10% Similarity=0.053 Sum_probs=202.5
Q ss_pred HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007684 68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY 147 (593)
Q Consensus 68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~ 147 (593)
-+=..+...|++..|+.-|.... ++.+..-.++-.--..|...|+-..|+.=+....+. +||-..- -|.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAv-------e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A--RiQ 111 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAV-------EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA--RIQ 111 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH-------cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH--HHH
Confidence 34455666777777777775444 333333333333344566666666666666665555 5554321 111
Q ss_pred HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCC--CHHHHH------------HHHHHHHhcCChHHHHHHH
Q 007684 148 VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDP--NEATFT------------SVARLAVAKEDPEMAFDLV 213 (593)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p--~~~ty~------------~li~~~~~~g~~~~A~~l~ 213 (593)
. -.-..|.|.+++|..=|+........- +...++ ..+..+...|+...|+...
T Consensus 112 ----R---------g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 112 ----R---------GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred ----h---------chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 0 011234589999999999988764211 111222 2234456678889999999
Q ss_pred HHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC
Q 007684 214 KQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ 292 (593)
Q Consensus 214 ~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~ 292 (593)
..+.+ +.| |...|-.-..+|...|++.+|+.=++..-...-. +..++--+-..+-..|+.+.++...++..+ ..
T Consensus 179 ~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 179 THLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 88887 334 4566777778899999999988766665432222 223333344555567877777766666544 33
Q ss_pred CCHH----HHHHHHHHHhcchhhhh--ccccchh--hhHHHhhhcCCCcccccccccCCceEEEEecccCCCCcCccccc
Q 007684 293 VSES----TFKIIEDWFDSVDAAEI--GVLNWDV--SKVREGIVRGGGGWHGQGWLGSGKWRVERTQIDENGVCCSCNER 364 (593)
Q Consensus 293 ~~~~----t~~~l~~~~~~~~~~~~--~~~~~d~--~~~~~~~~~~g~~~~g~~~~~~~~~~v~~~~i~~~g~c~~~~~a 364 (593)
|+.. .|..+...-.+...++. ....|-. +.-.+.|+..-.... -...+...+-..+..-+..++|
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~-------ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETM-------IRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccc-------eeeeeeheeeecccccCCHHHH
Confidence 4332 33333333322222221 1233433 233333332211000 0111111111122222334444
Q ss_pred cc----ccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhh
Q 007684 365 LV----CIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM 440 (593)
Q Consensus 365 l~----~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~ 440 (593)
++ +++++|.+..++..--.+|....++++|+.-|++..+-...-+.+-. -++.+-+...+
T Consensus 327 iqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re---------------Gle~Akrlkkq- 390 (504)
T KOG0624|consen 327 IQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE---------------GLERAKRLKKQ- 390 (504)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH---------------HHHHHHHHHHH-
Confidence 43 45588999999999999999999999999999998874432222111 12222222222
Q ss_pred CCCCCce-EEEecCCCcCCCCCCCcchHHHHHHHHhCCcEEeCCCCCCCh-------HHHHHHHHhCCcEEEecchhhcc
Q 007684 441 SPSKRMP-LVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPPGSNDD-------WYWLYATVNCKSLLVTNDEMRDH 512 (593)
Q Consensus 441 ~~~~~~~-lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD-------~~~lyaa~~~~~~~vs~D~~rdh 512 (593)
++++. .=+|+.+| +...+++.+..|+-+.-.--+|.++.. -|.=-||.+ =++|+-++|--
T Consensus 391 --s~kRDYYKILGVkR-------nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAK---EVLsd~EkRrq 458 (504)
T KOG0624|consen 391 --SGKRDYYKILGVKR-------NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAK---EVLSDPEKRRQ 458 (504)
T ss_pred --hccchHHHHhhhcc-------cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHH---HhhcCHHHHhh
Confidence 22222 22233333 445567777776655444433443332 244445443 36788888854
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.93 E-value=0.82 Score=38.98 Aligned_cols=49 Identities=6% Similarity=0.088 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPN--EATFTSVARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~ 217 (593)
|+.++|+.+|++....|+... ...+-.+.+.+...|++++|..++++..
T Consensus 15 G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 15 GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444443332 1233334444444444444444444443
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=94.93 E-value=0.072 Score=40.07 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=24.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 202 AKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 202 ~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
+.|++++|.++|+++.... | +...+-.+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555554421 3 233444455555555555555555555543
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.75 E-value=0.24 Score=49.49 Aligned_cols=212 Identities=12% Similarity=0.107 Sum_probs=119.7
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCCH--
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPE-GVLRHKLDMCSKRGDVFEALRLYDDARSN----GITLSQ-- 139 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-- 139 (593)
.-....|...|++++|...|........+ .+..... ..|......|.+. ++++|...+++..+. | .|+.
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~--~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA 114 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEK--LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAA 114 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHH
Confidence 44455677788888888887555422111 1111111 1255555555444 888888888876532 3 2221
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 007684 140 HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT----DKVDPN--EATFTSVARLAVAKEDPEMAFDLV 213 (593)
Q Consensus 140 ~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~----~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~ 213 (593)
..+..+-..|... .|++++|++.|++..+ .| .+. ..++..+...+++.|++++|.++|
T Consensus 115 ~~~~~lA~~ye~~---------------~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 115 KCLKELAEIYEEQ---------------LGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHHHHHHHHHCCT---------------T--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 1222233345443 1589999999998654 34 222 236778888999999999999999
Q ss_pred HHHHhCCCCC-----Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhc--CCHHHHHH
Q 007684 214 KQMKSFGIPP-----KLR-SYGPALFGFCKLGNTDKAYEVDAHMGES--GVVPE--EPELSALLKLSVDA--KKVDKVYE 281 (593)
Q Consensus 214 ~~m~~~g~~p-----~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~Ll~~~~~~--g~~~~a~~ 281 (593)
++....-+.. +.. .|-..+-++...||...|.+.+++.... ++..+ -.....||.++-.. ..+..+..
T Consensus 179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9997643322 222 2334555667789999999999998743 34322 23366677777432 24555555
Q ss_pred HHHHHHHccCCCCHHHHHHHH
Q 007684 282 ILHRLRTLVRQVSESTFKIIE 302 (593)
Q Consensus 282 ~l~~m~~~~~~~~~~t~~~l~ 302 (593)
-|+.+.+ +++.--.+|+
T Consensus 259 ~~d~~~~----ld~w~~~~l~ 275 (282)
T PF14938_consen 259 EYDSISR----LDNWKTKMLL 275 (282)
T ss_dssp HHTTSS-------HHHHHHHH
T ss_pred HHcccCc----cHHHHHHHHH
Confidence 5555433 5555444444
No 163
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=1.5 Score=46.69 Aligned_cols=113 Identities=15% Similarity=0.176 Sum_probs=83.7
Q ss_pred ccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH--HHHHHH--hcCChh
Q 007684 167 SNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP--ALFGFC--KLGNTD 242 (593)
Q Consensus 167 ~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~--li~~~~--~~g~~~ 242 (593)
++|++++|...-+++...+ +-|...+.+=+-+..+.+++++|+.+.+. .+. ..+++. +=.+|| +.+..|
T Consensus 24 ~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred cchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHcccHH
Confidence 3579999999999999877 56667788878889999999999965543 221 123332 357777 688999
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684 243 KAYEVDAHMGESGVVPEEP-ELSALLKLSVDAKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~ 291 (593)
+|...++ |..++.. +...=...+-+.|++++|+.+|+++.++..
T Consensus 97 ealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 97 EALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 9999988 4444443 444455667789999999999999977544
No 164
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.59 E-value=0.16 Score=45.00 Aligned_cols=72 Identities=17% Similarity=0.200 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-----ESGVVPEEPEL 263 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~ 263 (593)
.+...++..+...|++++|.++.+.+....- -+...|..+|.+|...|+..+|.++|+++. +.|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4566778888899999999999999987442 457799999999999999999999999885 45899988763
No 165
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.47 E-value=0.76 Score=47.29 Aligned_cols=131 Identities=12% Similarity=0.206 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccH-HHHHHHHHhcCChhHHHHH
Q 007684 170 GLKRGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY-GPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~l 247 (593)
-++.|..+|-+..+.| +.++...++++|.-++ .|+...|.++|+-=... . ||...| +-.+.-+.+-++-+.|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 3555555555555555 4455555555555443 24455555555432221 1 343332 2234444455555555555
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 007684 248 DAHMGESGVVPE--EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD 306 (593)
Q Consensus 248 ~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~ 306 (593)
|+.-.+. +.-+ -..|..+|+--..-|+...|+.+=++|.+ +.|.+.+..+...-|.
T Consensus 489 Fetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 489 FETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 5532210 1111 23455666655666666666666666655 4455555555555553
No 166
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.46 E-value=0.21 Score=48.17 Aligned_cols=87 Identities=16% Similarity=0.121 Sum_probs=71.1
Q ss_pred CCcccHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHH
Q 007684 223 PKLRSYGPALFGFCK-----LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK----------------KVDKVYE 281 (593)
Q Consensus 223 p~~~ty~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g----------------~~~~a~~ 281 (593)
-|..+|-.++..|.. .+.++-....++.|.+-|+.-|..+|+.||+.+-+.. .-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355677777777754 4677888888999999999999999999999886543 2355788
Q ss_pred HHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684 282 ILHRLRTLVRQVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 282 ~l~~m~~~~~~~~~~t~~~l~~~~~~~~ 309 (593)
++++|...|+.|+.++-.++++.|.+.+
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 9999999999999999999999996543
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.45 E-value=1.9 Score=43.03 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=115.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSN----GITLS-QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
|...-..|-..|++++|.+.|...... |-... ...|.....+|.+. ++++|.+.|++.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-----------------~~~~Ai~~~~~A 100 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-----------------DPDEAIECYEKA 100 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-----------------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-----------------CHHHHHHHHHHH
Confidence 888888999999999999999886533 21111 12233333355443 788888888876
Q ss_pred Hh----CCCCCCHH--HHHHHHHHHHhc-CChHHHHHHHHHHHh----CCCCCC--cccHHHHHHHHHhcCChhHHHHHH
Q 007684 182 IT----DKVDPNEA--TFTSVARLAVAK-EDPEMAFDLVKQMKS----FGIPPK--LRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 182 ~~----~g~~p~~~--ty~~li~~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
.. .| .|+.. ++..+...|-.. |++++|.+.|++..+ .+ .+. ...+..+...+.+.|++++|.++|
T Consensus 101 ~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 101 IEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 53 45 44443 677888888888 999999999999854 23 222 356777888999999999999999
Q ss_pred HHHHhCCCC-----CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcc--CCCCH--HHHHHHHHHHh
Q 007684 249 AHMGESGVV-----PEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLV--RQVSE--STFKIIEDWFD 306 (593)
Q Consensus 249 ~~m~~~g~~-----p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~--~~~~~--~t~~~l~~~~~ 306 (593)
++....-.. .+... |-..+-++...|+.-.|.+.+++....- ...+. .....|+..|.
T Consensus 179 e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 179 EEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 998754332 22322 2333445667899999999999987532 22222 23455566553
No 168
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=2 Score=41.12 Aligned_cols=188 Identities=12% Similarity=0.031 Sum_probs=121.6
Q ss_pred hHHhhcCCccccch--HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 007684 53 TDIKQNRFSADLTT--GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDA 130 (593)
Q Consensus 53 ~~m~~~g~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 130 (593)
.++...-..++..+ --++-+....|+.+.|...+.+.. ..++.+..+-..---.+-..|+.++|.++++.+
T Consensus 40 ~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~-------~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~l 112 (289)
T KOG3060|consen 40 NYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLR-------DRFPGSKRVGKLKAMLLEATGNYKEAIEYYESL 112 (289)
T ss_pred HHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHH-------HhCCCChhHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 34444446677777 455556667788888887774333 333444443222222234468899999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 007684 131 RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAF 210 (593)
Q Consensus 131 ~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 210 (593)
.+.. +.|.++|--=+...... |+-.+|++-+.+..+.- .-|...|.-+...|...|++++|.
T Consensus 113 L~dd-pt~~v~~KRKlAilka~----------------GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 113 LEDD-PTDTVIRKRKLAILKAQ----------------GKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hccC-cchhHHHHHHHHHHHHc----------------CCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHH
Confidence 9886 44667776544433332 46668888887777654 679999999999999999999999
Q ss_pred HHHHHHHhCCCCCCccc-HHHHHHH---HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 007684 211 DLVKQMKSFGIPPKLRS-YGPALFG---FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSV 271 (593)
Q Consensus 211 ~l~~~m~~~g~~p~~~t-y~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~ 271 (593)
-.+++|.- +.|-... +..+-.. -+...+.+-|.+.|....+.. .....++...|.
T Consensus 175 fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~----~~~~ral~GI~l 233 (289)
T KOG3060|consen 175 FCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN----PKNLRALFGIYL 233 (289)
T ss_pred HHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC----hHhHHHHHHHHH
Confidence 99999987 4465433 2333333 333446677888888876533 233444444443
No 169
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.42 E-value=2.4 Score=47.44 Aligned_cols=134 Identities=10% Similarity=0.023 Sum_probs=97.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH
Q 007684 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF 193 (593)
Q Consensus 114 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 193 (593)
....+++..|+...+.+.+. .||. .|...+.++...+ .|+.++|..+++.....+.. |..|.
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r--------------~gk~~ea~~~Le~~~~~~~~-D~~tL 80 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFR--------------LGKGDEALKLLEALYGLKGT-DDLTL 80 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHH--------------hcCchhHHHHHhhhccCCCC-chHHH
Confidence 34567888999888887776 4554 3555566555432 46888999999888877744 88899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 194 TSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK----AYEVDAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 194 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
.++-..|...++.|+|..+|+...+. -|+...-..+..+|.+.+++.+ |+++++. +.-+...|-++++.
T Consensus 81 q~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-----~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 81 QFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-----FPKRAYYFWSVISL 153 (932)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCcccchHHHHHHH
Confidence 99999999999999999999988763 3777777778888888887765 4555552 33344556666666
Q ss_pred HHh
Q 007684 270 SVD 272 (593)
Q Consensus 270 ~~~ 272 (593)
+..
T Consensus 154 ilq 156 (932)
T KOG2053|consen 154 ILQ 156 (932)
T ss_pred HHH
Confidence 654
No 170
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.30 E-value=0.58 Score=46.83 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHhCCC---CCCcccHHHHHHHHHhcCC
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVA--KE----DPEMAFDLVKQMKSFGI---PPKLRSYGPALFGFCKLGN 240 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~--~g----~~~~A~~l~~~m~~~g~---~p~~~ty~~li~~~~~~g~ 240 (593)
.+++.+++++.|++.|..-+..+|-+..-.... .. ....|..+++.|++... .++...+..++.. ...+
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 577889999999999999988777664433333 22 25678999999997432 3455667766655 3333
Q ss_pred ----hhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcC--CHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684 241 ----TDKAYEVDAHMGESGVVPEEPE--LSALLKLSVDAK--KVDKVYEILHRLRTLVRQVSESTFKII 301 (593)
Q Consensus 241 ----~~~A~~l~~~m~~~g~~p~~~t--~~~Ll~~~~~~g--~~~~a~~~l~~m~~~~~~~~~~t~~~l 301 (593)
.+.++..|+.+...|+..+... .+.++..+-... ...++.++++.+.+.++++....|..+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 3567888999988898765543 444444433222 256889999999999999988877543
No 171
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.16 E-value=10 Score=41.19 Aligned_cols=177 Identities=9% Similarity=0.109 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCccccc------ccHHHHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSN------LGLKRGFEIFQQ 180 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~------g~~~~a~~l~~~ 180 (593)
+++|-+-|.+.|.++.|.++|++..+. ...+.-|+.+...|++-........+-.+-.+. -+++-.+.-|+.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~ 328 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFES 328 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHH
Confidence 788888888888888888888887766 446666777777777631000000000000000 112222222333
Q ss_pred HHhCCC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc------ccHHHHHHHHHhcCChhH
Q 007684 181 MITDKV-----------DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL------RSYGPALFGFCKLGNTDK 243 (593)
Q Consensus 181 M~~~g~-----------~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~ 243 (593)
+...+. +-+..++..-+. ...|+..+-...+.+..+. +.|.. ..|-.+...|-+.|+++.
T Consensus 329 lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 329 LMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 222110 011112222111 2235566666677666542 33432 235555666667899999
Q ss_pred HHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 244 AYEVDAHMGESGVVPE---EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 244 A~~l~~~m~~~g~~p~---~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
|..+|++......+-- ..+|..-...=.++.+++.|++++++...
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 9999988876554321 22344444444556677777777766543
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.04 E-value=2.1 Score=36.51 Aligned_cols=91 Identities=18% Similarity=0.094 Sum_probs=68.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHH-HHHHHH
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE---EPEL-SALLKL 269 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~-~~Ll~~ 269 (593)
+..++-..|+.++|..+|++....|+... .+.+-.+-++|...|+.++|..++++....- |+ .... ..+--+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 34567789999999999999999887554 3456667788999999999999999987532 33 2222 223346
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 007684 270 SVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 270 ~~~~g~~~~a~~~l~~m~~ 288 (593)
+...|+.++|.+.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6788999999998877654
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.95 E-value=0.13 Score=38.20 Aligned_cols=49 Identities=10% Similarity=0.157 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
|++++|.+.|++..+.. +-+...+..+..++...|++++|..+|+++.+
T Consensus 11 g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp THHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666655554 22444555555555566666666666655543
No 174
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.84 E-value=0.45 Score=52.31 Aligned_cols=156 Identities=14% Similarity=0.124 Sum_probs=89.8
Q ss_pred CHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHH--HHHH
Q 007684 103 PEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG--FEIF 178 (593)
Q Consensus 103 ~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a--~~l~ 178 (593)
++.+-.++++. |...|+.+.|.+-++.+++. ..|..|-+.|.+.+..+.+. ++.|.++.| .+-+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAk------VClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAK------VCLGHMKNARGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHH------HhhhhhhhhhhHHHH
Confidence 34445566654 77889999999998888765 78999999998875222211 111222221 2223
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 179 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (593)
++..+.| + .+=.-+.-.....|.+++|..++.+.+...+ |=..|-..|.+++|+++-+.=.+--++
T Consensus 793 R~a~q~~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR~DL---------lNKlyQs~g~w~eA~eiAE~~DRiHLr- 858 (1416)
T KOG3617|consen 793 RRAQQNG---E-EDEAKVAVLAIELGMLEEALILYRQCKRYDL---------LNKLYQSQGMWSEAFEIAETKDRIHLR- 858 (1416)
T ss_pred HHHHhCC---c-chhhHHHHHHHHHhhHHHHHHHHHHHHHHHH---------HHHHHHhcccHHHHHHHHhhccceehh-
Confidence 3333322 2 2222333345677888888888888876432 445566678888888776653322222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 259 EEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 259 ~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
.||-.-..-+...++.+.|++.|++.
T Consensus 859 --~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 859 --NTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred --hhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 23333334444455666666666553
No 175
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.80 E-value=0.48 Score=45.32 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHh--CCChhhHHhhcCCccccc----------h-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCC
Q 007684 35 HTYRSLLCWHMHS--FTKPITDIKQNRFSADLT----------T-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRE 101 (593)
Q Consensus 35 ~~~~~ll~~~~~~--~~~~~~~m~~~g~~~~~~----------~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 101 (593)
.-+++|...|.-. +.+.+.+.... ..|..+ . +.++..+...|.+.-....+.++. +...+
T Consensus 137 npqesLdRl~~L~~~V~~ii~~~e~~-~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi------~~~~e 209 (366)
T KOG2796|consen 137 NPQESLDRLHKLKTVVSKILANLEQG-LAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVI------KYYPE 209 (366)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHH------HhCCc
Confidence 4457777766633 44444333322 222221 1 344444444455544555553332 12223
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
..+.....|+..-.+.||++.|..+|+...+..-+.|..+++.+..--... -++-..++..|...|.+.
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~-----------i~lg~nn~a~a~r~~~~i 278 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF-----------LHLGQNNFAEAHRFFTEI 278 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh-----------heecccchHHHHHHHhhc
Confidence 344457888888888899999999988777654455666666554311100 011123777788888777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 007684 182 ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF 235 (593)
Q Consensus 182 ~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 235 (593)
.... ..|....|+=.-...-.|+...|.+..+.|+. ..|...+-++++--+
T Consensus 279 ~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~~nL 329 (366)
T KOG2796|consen 279 LRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVLFNL 329 (366)
T ss_pred cccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHHHHH
Confidence 6655 44555555554455556888888888888877 346665555554433
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.75 E-value=0.33 Score=36.03 Aligned_cols=55 Identities=13% Similarity=0.128 Sum_probs=30.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 232 LFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
...+.+.|++++|.+.|++..+.. |+ ...+..+..++...|++++|..+|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666666666666665443 32 33355555555666666666666665543
No 177
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.62 E-value=2.4 Score=49.81 Aligned_cols=207 Identities=12% Similarity=0.034 Sum_probs=127.2
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCCCH--H
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESP--EGVLRHKLDMCSKRGDVFEALRLYDDARSN--GITLSQ--H 140 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~--~ 140 (593)
..+...+...|++++|...+.+.+.. .........+ ...+..+...+...|++++|...+++.... ...+.. .
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQL-IEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH-HHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 55566788899999999988776622 2211111112 122455556677789999999999887643 111221 2
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC----CCCCCH-HHH-HHHHHHHHhcCChHHHHHHHH
Q 007684 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD----KVDPNE-ATF-TSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~----g~~p~~-~ty-~~li~~~~~~g~~~~A~~l~~ 214 (593)
.+..+-.+.... |+.++|.+.+++.... +..... ... ...+..+...|+.+.|.+++.
T Consensus 614 ~~~~la~~~~~~----------------G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~ 677 (903)
T PRK04841 614 CLAMLAKISLAR----------------GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLR 677 (903)
T ss_pred HHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222222233333 6899999999887542 111111 111 112344556899999999987
Q ss_pred HHHhCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 215 QMKSFGIPPKL---RSYGPALFGFCKLGNTDKAYEVDAHMGE----SGVVPEE-PELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 215 ~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
........... ..+..+..++...|+.++|...+++... .|..++. .++..+..++...|+.++|...+.+.
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 678 QAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred hcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76542111110 1134566778899999999999998764 2433332 34666677888999999999999998
Q ss_pred HHcc
Q 007684 287 RTLV 290 (593)
Q Consensus 287 ~~~~ 290 (593)
.+..
T Consensus 758 l~la 761 (903)
T PRK04841 758 LKLA 761 (903)
T ss_pred HHHh
Confidence 7743
No 178
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.51 E-value=1.2 Score=44.47 Aligned_cols=195 Identities=8% Similarity=0.074 Sum_probs=120.8
Q ss_pred HHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHH--HHHHHH-----HHcCCCHHHHHHHHHHHHHCCCC----
Q 007684 68 LCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVL--RHKLDM-----CSKRGDVFEALRLYDDARSNGIT---- 136 (593)
Q Consensus 68 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~li~~-----~~~~g~~~~A~~l~~~m~~~g~~---- 136 (593)
.|+-.|.+.+++++|..+.... .+..+..| ..+..+ ......+.-|...|.-.-+.+..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl----------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDL----------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred hheeeecccccHHHHHHHHhhc----------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc
Confidence 3444788889999988877222 23333222 222221 11223455666777655555543
Q ss_pred CCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007684 137 LSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216 (593)
Q Consensus 137 p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 216 (593)
|...+..+-+-++- ++++++-.++..+.--..-|..-| ++..+.+..|...+|+++|-++
T Consensus 360 pGRQsmAs~fFL~~-------------------qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 360 PGRQSMASYFFLSF-------------------QFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred cchHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhh
Confidence 33343333333332 578888888888876655555554 4788999999999999999888
Q ss_pred HhCCCCCCcccHHHHH-HHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 007684 217 KSFGIPPKLRSYGPAL-FGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 217 ~~~g~~p~~~ty~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~ 294 (593)
....+ -|..+|-.++ .+|.+.+.++-|++++-.+...+ +..+ +..+.+.|-+.+.+=-|-+.|+.+.. ..|+
T Consensus 420 s~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~ 493 (557)
T KOG3785|consen 420 SGPEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPT 493 (557)
T ss_pred cChhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCC
Confidence 76544 4456776555 78889999999999988875321 2223 33344566678877667777777754 3455
Q ss_pred HHHH
Q 007684 295 ESTF 298 (593)
Q Consensus 295 ~~t~ 298 (593)
++.+
T Consensus 494 pEnW 497 (557)
T KOG3785|consen 494 PENW 497 (557)
T ss_pred cccc
Confidence 5444
No 179
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=93.36 E-value=5.2 Score=42.41 Aligned_cols=115 Identities=18% Similarity=0.203 Sum_probs=92.5
Q ss_pred cHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH-HhCCCCCCcccH-HHHHHHHHhcCChhHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSY-GPALFGFCKLGNTDKAYE 246 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m-~~~g~~p~~~ty-~~li~~~~~~g~~~~A~~ 246 (593)
-++.|..+|.+..+.+..+ ....++++|.-+|. ++.+-|+++|+-= +.. +|...| ..-++-+...++-..|..
T Consensus 381 GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 381 GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhCcchhHHH
Confidence 5888999999999998888 77888889887775 7888999999864 333 444333 445677778888899999
Q ss_pred HHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 247 VDAHMGESGVVPEE--PELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 247 l~~~m~~~g~~p~~--~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+|+..+..++.||. ..|..+|+.=..-|+...+.++-+++..
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999988777665 5599999999999999999998887755
No 180
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.34 E-value=0.16 Score=39.33 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCC-cccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSF----GI-PPK-LRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
.+|+.+...|...|++++|++.|++..+. |- .|+ ..+++.+...|...|+.++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777777777777777777766531 11 122 345566666666666666666666654
No 181
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.30 E-value=12 Score=39.18 Aligned_cols=121 Identities=10% Similarity=0.092 Sum_probs=75.1
Q ss_pred HHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007684 69 CTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYV 148 (593)
Q Consensus 69 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~ 148 (593)
-+.+=.+..++..|..+++... .-.+.-+..+---+.+=-.-|++..|.++|+...+. .|+...|++.|+.
T Consensus 113 Yae~Emknk~vNhARNv~dRAv-------t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~f 183 (677)
T KOG1915|consen 113 YAEFEMKNKQVNHARNVWDRAV-------TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKF 183 (677)
T ss_pred HHHHHHhhhhHhHHHHHHHHHH-------HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHH
Confidence 3445556667777777775444 222223344555566666678999999999998887 8999999999985
Q ss_pred HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007684 149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQM 216 (593)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 216 (593)
=.+-+ .++.|..+|+...-. .|+..+|---.+-=-+.|....|..+|+..
T Consensus 184 ElRyk----------------eieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 184 ELRYK----------------EIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHhh----------------HHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55543 455666666655533 255555555544444455554444444443
No 182
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.24 E-value=11 Score=38.88 Aligned_cols=168 Identities=14% Similarity=0.137 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNG-I-TLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
.-.++-.|....+++...++++.|...- + .++.....-+.. +..+.+ +.|+.++|.+++..+..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn-------------~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRN-------------KPGDREKALQILLPVLE 210 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcc-------------cCCCHHHHHHHHHHHHh
Confidence 3344445999999999999999998762 1 111111111111 222211 24899999999999766
Q ss_pred CCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-hh---HHHHHH--
Q 007684 184 DKVDPNEATFTSVARLAVA---------KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGN-TD---KAYEVD-- 248 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~---~A~~l~-- 248 (593)
..-.++..||..+.+.|-. ....++|...|.+--+ +.|+..+==++...+...|. .+ +..++-
T Consensus 211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~ 288 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVK 288 (374)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 6668899999999888754 2236777777775543 44665332222222223332 11 222222
Q ss_pred -HHHH-hCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 249 -AHMG-ESGVV---PEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 249 -~~m~-~~g~~---p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
..+. +.|.. .+--.+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2222 33432 33444688999999999999999999999874
No 183
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.17 E-value=0.84 Score=47.61 Aligned_cols=66 Identities=9% Similarity=-0.032 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR----SYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
+.+...++++..+|.+.|++++|...|++..+ +.|+.. +|..+..+|.+.|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999887 457753 4788999999999999999999988764
No 184
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.08 E-value=2.5 Score=45.67 Aligned_cols=160 Identities=16% Similarity=0.121 Sum_probs=107.5
Q ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 107 LRHKLDMCSKR---GDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 107 ~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
|+.-+.-+.+. -.++.|..+|++..+ |++|...-+-.|+++-.... .|....|+++|++.-.
T Consensus 550 W~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe--------------~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEE--------------HGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHh
Confidence 66666655553 478999999999998 77766655544554322221 3678889999998543
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH---HHHhcCChhHHHHHHHHHHh-CCCC
Q 007684 184 DKVDPNE--ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF---GFCKLGNTDKAYEVDAHMGE-SGVV 257 (593)
Q Consensus 184 ~g~~p~~--~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~---~~~~~g~~~~A~~l~~~m~~-~g~~ 257 (593)
++++.. ..||..|+-.+..=-+.....+|++..+. .|+...-...|. .=++.|.++.|..+|..--+ ..-+
T Consensus 615 -~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr 691 (835)
T KOG2047|consen 615 -AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPR 691 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCc
Confidence 334433 47888888776655556677888888774 477655444443 34678999999999988654 2333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007684 258 PEEPELSALLKLSVDAKKVDKVYEILH 284 (593)
Q Consensus 258 p~~~t~~~Ll~~~~~~g~~~~a~~~l~ 284 (593)
-+..-|.+.=..=.++|+-+-..++++
T Consensus 692 ~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 692 VTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 455668888888889999655555543
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=92.90 E-value=0.4 Score=36.00 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcC-ChhHHHHHHHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLG-NTDKAYEVDAHMG 252 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g-~~~~A~~l~~~m~ 252 (593)
..+|..+...+...|++++|+..|++..+.. |+ ...|..+-.+|.+.| +.++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3445555555566666666666666655532 32 344555555555555 4555555555543
No 186
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.81 E-value=9.1 Score=39.43 Aligned_cols=177 Identities=12% Similarity=0.081 Sum_probs=102.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCc-ccHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGI--PPKL-RSYGPALFGFCK---LGNTDKAYEVDAHMGESGVVPEEPELSA 265 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~-~ty~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 265 (593)
+...++-.|-...++|...++++.|...-. .++. ..--....|+-+ .|+.++|.+++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 344666679999999999999999987311 1111 111123445556 8999999999999777677788889988
Q ss_pred HHHHHHh----c-----CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcchhhhhccccch-hhhHHHhhhcCCCccc
Q 007684 266 LLKLSVD----A-----KKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVDAAEIGVLNWD-VSKVREGIVRGGGGWH 335 (593)
Q Consensus 266 Ll~~~~~----~-----g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~g~~~~ 335 (593)
+.+.|-+ . ...++|...|.+--+ .++..|.-|--+..-. ..+...+ ...+++.....
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe----~~~~~Y~GIN~AtLL~----~~g~~~~~~~el~~i~~~l----- 289 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE----IEPDYYSGINAATLLM----LAGHDFETSEELRKIGVKL----- 289 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc----CCccccchHHHHHHHH----HcCCcccchHHHHHHHHHH-----
Confidence 8887743 1 135677777665533 3333343222211100 0000111 11111111000
Q ss_pred ccccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 336 GQGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 336 g~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
++.+ |+ +...-...+...+..++.+..-.|+.+++....++|....
T Consensus 290 -------------~~ll---g~--------kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 290 -------------SSLL---GR--------KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred -------------HHHH---Hh--------hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 0000 00 0000112567788888999999999999999999998653
No 187
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.71 E-value=6.4 Score=42.63 Aligned_cols=184 Identities=14% Similarity=0.096 Sum_probs=97.9
Q ss_pred CCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCC
Q 007684 76 KSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGS 155 (593)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~ 155 (593)
.+++...+.+.++++ .+......+....--.+...|+-++|.+..+.-.+..+. +.+.|+++=-.+...
T Consensus 20 ~kQYkkgLK~~~~iL-------~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d--- 88 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQIL-------KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD--- 88 (700)
T ss_pred HHHHHhHHHHHHHHH-------HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh---
Confidence 345555555554444 233333444444444455566677777666665554332 445555443333333
Q ss_pred CCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHH
Q 007684 156 ESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFG 234 (593)
Q Consensus 156 ~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~ 234 (593)
.+.++|+..|.....-+ +-|...+--+.-.-++.++++.....-.+..+. .|+ ...|..+..+
T Consensus 89 -------------K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs 152 (700)
T KOG1156|consen 89 -------------KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVA 152 (700)
T ss_pred -------------hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHH
Confidence 26677777777666554 455556655555556666666666666666552 244 3456666666
Q ss_pred HHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHH------HHHhcCCHHHHHHHHHHH
Q 007684 235 FCKLGNTDKAYEVDAHMGESG-VVPEEPELSALLK------LSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 235 ~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~Ll~------~~~~~g~~~~a~~~l~~m 286 (593)
+--.|+...|.++.++..... -.|+...|..... ...+.|..++|.+-+..-
T Consensus 153 ~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 153 QHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 666777777777776666433 2344444333222 223455555555444433
No 188
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=12 Score=42.90 Aligned_cols=159 Identities=11% Similarity=-0.012 Sum_probs=120.4
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
...+.+|..+-.+-.+.|.+.+|.+-|-+. -|+..|--++..+.+. |.+++-.+.+..
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~----------------~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRT----------------GKYEDLVKYLLM 1158 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhc----------------CcHHHHHHHHHH
Confidence 344556777777777777777777666432 2667788888888886 699999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 007684 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE 260 (593)
Q Consensus 181 M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 260 (593)
.++..-.|...+ .||-+|++.+++.+..+++ ..|+...-..+-+-|...|.++.|.-+|...
T Consensus 1159 aRkk~~E~~id~--eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------- 1220 (1666)
T KOG0985|consen 1159 ARKKVREPYIDS--ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------- 1220 (1666)
T ss_pred HHHhhcCccchH--HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------
Confidence 888877787654 8999999999988766554 3488888888999999999999999888754
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 261 PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 261 ~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
..|..|...++.-|.+..|...-++. -+..|+..+-.+|
T Consensus 1221 SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1221 SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 45888888888888888887655544 3456776666666
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.61 E-value=2.4 Score=41.64 Aligned_cols=97 Identities=10% Similarity=-0.029 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGESG--VVPEEPEL 263 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~ 263 (593)
...|...+....+.|++++|...|+.+.+. .|+. ..+--+...|...|+.++|...|+.+...- -......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 346777776667789999999999999873 2554 355668889999999999999999998521 11123345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 264 SALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
-.+...+...|+.++|..+|+++.+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566777889999999999999877
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.29 E-value=1.6 Score=42.80 Aligned_cols=101 Identities=14% Similarity=0.083 Sum_probs=82.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCH
Q 007684 199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKV 276 (593)
Q Consensus 199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~ 276 (593)
-+.+.+++++|...|.+..+ +.|+ .+-|..=-.+|++.|..+.|++=.+..... .|. ..+|..|-.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999988 4565 566777889999999999999888776643 243 45699999999999999
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 277 DKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 277 ~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
++|.+.|++..+ +.|+-.+|..=+.+-
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999998866 778888886666554
No 191
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=92.13 E-value=21 Score=40.36 Aligned_cols=190 Identities=15% Similarity=0.067 Sum_probs=119.3
Q ss_pred HHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007684 72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC 151 (593)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~ 151 (593)
.+.+.|+.++|..+.+... .....++.+..++-..|...++.++|..+|+...+. -|+......+..+|++
T Consensus 52 sl~r~gk~~ea~~~Le~~~-------~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR 122 (932)
T KOG2053|consen 52 SLFRLGKGDEALKLLEALY-------GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVR 122 (932)
T ss_pred HHHHhcCchhHHHHHhhhc-------cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHH
Confidence 3678899999987764443 334457778999999999999999999999988876 5665444444556665
Q ss_pred cCCCCCCCCCCCcccccccHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHH
Q 007684 152 KCGSESSENGDRENDSNLGLKR----GFEIFQQMITDKVDPNEATFTSVARLAVAKED----------PEMAFDLVKQMK 217 (593)
Q Consensus 152 ~~~~~~~~~~~~~~~~~g~~~~----a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~----------~~~A~~l~~~m~ 217 (593)
. +.+.+ |++++. ..+-+...|=++++.....-. ...|.+.++.+.
T Consensus 123 ~----------------~~yk~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 123 E----------------KSYKKQQKAALQLYK-----NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred H----------------HHHHHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 4 23333 344443 234455566666666654321 234666677766
Q ss_pred hCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684 218 SFG-IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 218 ~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~ 291 (593)
+.+ -.-+..-.-.-+..+-..|+.++|++++..=. +.-..-+...-+--++.+...+++.+..++..++.+.+.
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 543 11111111122334446788999999995433 333333444445667778888999999999888877543
No 192
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=92.12 E-value=4.6 Score=44.55 Aligned_cols=207 Identities=9% Similarity=0.051 Sum_probs=135.5
Q ss_pred cCCccccch-HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 007684 58 NRFSADLTT-GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGIT 136 (593)
Q Consensus 58 ~g~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 136 (593)
..+.-+... ..|.-++...|+++.+.+.|++.+ .........|+.+-..|+.+|.-..|..+.++-....-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~-------~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL-------PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 334444555 667778888888888888886666 455555666888888888889888888888875544323
Q ss_pred CCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh--CCC--CCCHHHHHHHHHHHHhc--------
Q 007684 137 LSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT--DKV--DPNEATFTSVARLAVAK-------- 203 (593)
Q Consensus 137 p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~--~g~--~p~~~ty~~li~~~~~~-------- 203 (593)
|+..+--.+.. .|... .+..+++++.-.+... .+. ......|-.+--+|...
T Consensus 390 ps~~s~~Lmasklc~e~---------------l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~s 454 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIER---------------LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKS 454 (799)
T ss_pred CCcchHHHHHHHHHHhc---------------hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChH
Confidence 54444333443 67664 2566666665555544 111 12334455555455432
Q ss_pred ---CChHHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007684 204 ---EDPEMAFDLVKQMKSFGI-PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279 (593)
Q Consensus 204 ---g~~~~A~~l~~~m~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a 279 (593)
..-.++.+.+++..+.+- .|+. .|. +---|+..++++.|++...+..+.+-.-+...|.-|.-.+...+++..|
T Consensus 455 eR~~~h~kslqale~av~~d~~dp~~-if~-lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDPLV-IFY-LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCchH-HHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 123467788888876432 2333 333 4445677889999999999998876666788888888888888999999
Q ss_pred HHHHHHHHH
Q 007684 280 YEILHRLRT 288 (593)
Q Consensus 280 ~~~l~~m~~ 288 (593)
+.+.+...+
T Consensus 533 l~vvd~al~ 541 (799)
T KOG4162|consen 533 LDVVDAALE 541 (799)
T ss_pred HHHHHHHHH
Confidence 988876543
No 193
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=92.09 E-value=16 Score=40.46 Aligned_cols=265 Identities=14% Similarity=0.083 Sum_probs=139.9
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCCCCCC--CCC-CcccccccHHHHH----HHHHHHHhC
Q 007684 115 SKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC---KCGSESSE--NGD-RENDSNLGLKRGF----EIFQQMITD 184 (593)
Q Consensus 115 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~---~~~~~~~~--~~~-~~~~~~g~~~~a~----~l~~~M~~~ 184 (593)
.+.+..+++..-+......+...+..++..+...+.. .+..|... ..+ ..+.-..+.+++. -.+.++...
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~ 317 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLK 317 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence 3456667777777777766666677766665443322 11111100 000 0000111233332 233444445
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELS 264 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 264 (593)
.+.-|...|-.|.-+....|+++.+-+.|++....-+ -....|..+-..|...|.-.+|..++++-....-.|+..+--
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 5666788888888888889999999999988875322 345677778888888888888888888765333234443322
Q ss_pred HHH-HHH-HhcCCHHHHHHHHHHHHHccC----CCCHHHHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccccc
Q 007684 265 ALL-KLS-VDAKKVDKVYEILHRLRTLVR----QVSESTFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHGQG 338 (593)
Q Consensus 265 ~Ll-~~~-~~~g~~~~a~~~l~~m~~~~~----~~~~~t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g~~ 338 (593)
.++ ..| .+-|.++++..+-.+...... ...+..+..+-=+|. ..+ .....|.+ ++...+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~-~~A--~~a~~~se---R~~~h~k-------- 462 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYG-FQA--RQANLKSE---RDALHKK-------- 462 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH-hHh--hcCCChHH---HHHHHHH--------
Confidence 222 223 235566777666666554211 111112211111111 110 01111111 0000000
Q ss_pred cccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhcCCcCeeeecc
Q 007684 339 WLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRHGPFDAVIDGA 415 (593)
Q Consensus 339 ~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~~~~d~vidg~ 415 (593)
.+ ..-.+++.++|.|+.....+-.-|+.++++.+|....++.++-++..++...-+
T Consensus 463 ------------sl---------qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whL 518 (799)
T KOG4162|consen 463 ------------SL---------QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHL 518 (799)
T ss_pred ------------HH---------HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 00 001112224444444444555568889999999999999999877776655543
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.07 E-value=1 Score=34.13 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=28.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
.|.+.+++++|.++++.+...+ |+ ...+...-..+.+.|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555556666666666555532 32 34444455555555566666555555553
No 195
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=91.88 E-value=0.34 Score=37.50 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=51.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGES----GVV-PE-EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+|+.+-..|...|++++|++.|++.... |-. |+ ..++..+..++...|+.++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 357899999999999999999999988742 211 22 45588899999999999999999988754
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.52 E-value=0.89 Score=34.07 Aligned_cols=62 Identities=11% Similarity=0.018 Sum_probs=52.5
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAK-KVDKVYEILHRLRT 288 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g-~~~~a~~~l~~m~~ 288 (593)
..+|..+-..+...|++++|+..|++..+.. |+ ...|..+-.++...| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567888899999999999999999998754 54 455888889999999 79999999998765
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=91.19 E-value=1.5 Score=33.17 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=51.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684 232 LFGFCKLGNTDKAYEVDAHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301 (593)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l 301 (593)
-..|.+.+++++|.++++.+...+ | +...+...-.++.+.|++++|.+.|++..+ ..|+......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence 357889999999999999998754 4 444577788889999999999999999986 34555544433
No 198
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=5.4 Score=42.19 Aligned_cols=123 Identities=16% Similarity=0.091 Sum_probs=81.3
Q ss_pred CcccccccHHHHHHHHHHHHhCCCCCCHHHHHHH-------------------------HHHHHhcCChHHHHHHHHHHH
Q 007684 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV-------------------------ARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 163 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l-------------------------i~~~~~~g~~~~A~~l~~~m~ 217 (593)
..+.+.++.+.|+..|.+.......||..+=... -..+.+.|++..|...+.++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4555667888888888776655444443321111 234567899999999999998
Q ss_pred hCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 218 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+.. +-|.+.|+.--.+|.+.|.+..|.+=.+.-.+. .|+... |..=..++....++++|.+.|.+-++
T Consensus 386 kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 386 KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 865 234789999999999999999888766655543 233222 33333333344577888888887766
No 199
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=12 Score=39.82 Aligned_cols=220 Identities=14% Similarity=0.122 Sum_probs=125.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDK 185 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g 185 (593)
+..+.++..+..++..|++-++...+.. ...+|...+. +|... |...+....-+.-.+.|
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~----------------~~~~~c~~~c~~a~E~g 287 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLER----------------GKYAECIELCEKAVEVG 287 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhc----------------cHHHHhhcchHHHHHHh
Confidence 6778888889999999999999877763 4455655554 55554 23333333333332222
Q ss_pred CCCCHHHHHH-------HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 007684 186 VDPNEATFTS-------VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP 258 (593)
Q Consensus 186 ~~p~~~ty~~-------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 258 (593)
.-...-|+. +-.+|.+.++.+.|...|.+....-..|+.. .+....+++....+...- +.|
T Consensus 288 -re~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~p 355 (539)
T KOG0548|consen 288 -RELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INP 355 (539)
T ss_pred -HHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hCh
Confidence 111122222 3346666788899999998866543333321 223344444444443332 223
Q ss_pred CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHhcchhhhhccccchhhhHHHhhhcCCCcccc
Q 007684 259 EEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES-TFKIIEDWFDSVDAAEIGVLNWDVSKVREGIVRGGGGWHG 336 (593)
Q Consensus 259 ~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~-t~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~~~g~~~~g 336 (593)
+... .-.=...+.+.|++..|...|.++.... |+.. .|.--...|.+.+....+
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~a---------------------- 411 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEA---------------------- 411 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHH----------------------
Confidence 3322 2222556678899999999999987643 5443 443333333322221111
Q ss_pred cccccCCceEEEEecccCCCCcCcccccccccCCCHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHhc
Q 007684 337 QGWLGSGKWRVERTQIDENGVCCSCNERLVCIDIDPRETENFASSLSNLACQREVRSDFNKFQEWLGRH 405 (593)
Q Consensus 337 ~~~~~~~~~~v~~~~i~~~g~c~~~~~al~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~~~f~~~l~~~ 405 (593)
...+-.++.+.|+...-|.--..++-...++++|.+.|++-++..
T Consensus 412 ------------------------L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 412 ------------------------LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred ------------------------HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112333455677766666666677777788888888888877654
No 200
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.52 E-value=7.4 Score=40.40 Aligned_cols=117 Identities=11% Similarity=0.153 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHH-HHhCCCCCCHHHH-HH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPALFGFCKLGNTDKAYEVDAH-MGESGVVPEEPEL-SA 265 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~-~~ 265 (593)
-..+|...|++-.+..-++.|..+|-+..+.| +.+++..|+++|.-+| .|+...|..+|+- |+. -||...| +.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 45678889999999999999999999999988 6788899999988776 5688899999885 332 2555554 45
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHhcch
Q 007684 266 LLKLSVDAKKVDKVYEILHRLRTLVRQ-VSESTFKIIEDWFDSVD 309 (593)
Q Consensus 266 Ll~~~~~~g~~~~a~~~l~~m~~~~~~-~~~~t~~~l~~~~~~~~ 309 (593)
.+..+..-++-..|..+|+...+..-. --...|..++..=...|
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G 516 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVG 516 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhc
Confidence 666777788888888888844331110 11335555554433333
No 201
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=90.43 E-value=18 Score=35.10 Aligned_cols=164 Identities=10% Similarity=-0.004 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL---YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll---~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
...|. ....+.+.|++++|.+.|+++...--. +.....+.+ .++-+. ++.++|...|++
T Consensus 33 ~~~Y~-~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~----------------~~y~~A~~~~e~ 94 (243)
T PRK10866 33 SEIYA-TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKN----------------ADLPLAQAAIDR 94 (243)
T ss_pred HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhc----------------CCHHHHHHHHHH
Confidence 33355 444556789999999999999886322 233333332 244443 599999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh--c---------------CC---hHHHHHHHHHHHhCCCCCCcccH------------
Q 007684 181 MITDKVDPNEATFTSVARLAVA--K---------------ED---PEMAFDLVKQMKSFGIPPKLRSY------------ 228 (593)
Q Consensus 181 M~~~g~~p~~~ty~~li~~~~~--~---------------g~---~~~A~~l~~~m~~~g~~p~~~ty------------ 228 (593)
..+....-...-|.-.+.+.+. . .| ...|++.|+++.+. -|+..-.
T Consensus 95 fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 95 FIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHH
Confidence 9876533333445555555442 1 12 23566666666542 1433110
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 229 ------GPALFGFCKLGNTDKAYEVDAHMGE--SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 229 ------~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
-.+..-|-+.|.+..|..=++.+.+ .+-+........++.+|.+.|..++|..+...+.
T Consensus 173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1234457778888888888888775 2344455567778888888888888887766554
No 202
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=90.37 E-value=17 Score=39.54 Aligned_cols=190 Identities=12% Similarity=0.046 Sum_probs=96.2
Q ss_pred HhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007684 73 FSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152 (593)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~ 152 (593)
+..-|+.++|....+.-+ .....+...|.++--.+-...++++|++-|..+...+- -|...+.-|-.+=++.
T Consensus 51 L~~lg~~~ea~~~vr~gl-------r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~Qm 122 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGL-------RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQM 122 (700)
T ss_pred hhcccchHHHHHHHHHHh-------ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHH
Confidence 444566677766663333 22233344488877778888999999999998887742 2445444443333333
Q ss_pred CCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccHHHH
Q 007684 153 CGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPA 231 (593)
Q Consensus 153 ~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~l 231 (593)
|+++...+.-.+..+.. +-..+.|..++.++.-.|+...|..++++.++.. -.|+...|.-.
T Consensus 123 ----------------Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s 185 (700)
T KOG1156|consen 123 ----------------RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS 185 (700)
T ss_pred ----------------HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH
Confidence 24455555555554443 3344556666666666666666666666665432 23444433332
Q ss_pred HHH------HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 232 LFG------FCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 232 i~~------~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
... ..+.|..++|.+-+..-+. .+.-....-..-...+.+.++.++|..++..+..
T Consensus 186 e~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 186 ELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 222 2234444444444333321 1111111122233344455555555555555544
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=90.31 E-value=10 Score=38.37 Aligned_cols=98 Identities=11% Similarity=0.075 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|....|.++-.+.+ .||..-|-.-|++++..++|++-.++-.. .- +..-|-+.+.++.+.|...+|..+.
T Consensus 191 ~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 191 GQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred CCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHHHHHH
Confidence 46667776665554 67888888888888888888877665432 22 2378888888888888888888777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
..+ + +..-+..|.+.|++.+|.+.--+.
T Consensus 261 ~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 261 PKI------P----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HhC------C----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 763 2 245566777888888777654443
No 204
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=89.90 E-value=6.2 Score=38.81 Aligned_cols=95 Identities=9% Similarity=0.018 Sum_probs=57.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHH
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQM 181 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M 181 (593)
.|+..+....+.|++++|...|+.+.+. .|+. ..+-.+-.+|... |++++|...|+.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~----------------g~~~~A~~~f~~v 206 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNK----------------GKKDDAAYYFASV 206 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHc----------------CCHHHHHHHHHHH
Confidence 3777777767778888888888887766 3332 1222222344443 4777777777777
Q ss_pred HhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 182 ITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 182 ~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
..... +....++-.+...+...|+.++|..+++++.+
T Consensus 207 v~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 207 VKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65321 11223344445556677777777777777765
No 205
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.60 E-value=13 Score=32.11 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=74.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCC----------------CCcccHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIP----------------PKLRSYGPA 231 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~----------------p~~~ty~~l 231 (593)
|..+++.++..+..... +..-||-+|--...+-+-+...++++.+-+ ..+. -+..-.+..
T Consensus 16 G~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~A 92 (161)
T PF09205_consen 16 GDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLA 92 (161)
T ss_dssp T-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHH
T ss_pred chHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHH
Confidence 68889999999887533 445566666555555666666777766633 1111 122334556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~ 291 (593)
+..+.++|+-|.-.+++.++.. +-.++....-.+..+|.+-|...++-+++.+.-+.|.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 7777778888888888888764 4457777788889999999999999999988877665
No 206
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=89.53 E-value=7.8 Score=38.82 Aligned_cols=128 Identities=12% Similarity=0.097 Sum_probs=73.9
Q ss_pred HHhcCCCcccCCCCcccccchHHhhh------hcCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-CHHHH
Q 007684 72 AFSKKSTVNESSAPNTGTMSNKSKKK------ARRESPE--GVLRHKLDMCSKRGDVFEALRLYDDARSNGITL-SQHHY 142 (593)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty 142 (593)
.+.+.|.+++|+.-|+++++...... .+..... ......+..+...||...|+.....+.+. .| |...|
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~ 192 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLR 192 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHH
Confidence 36689999999999988874322100 0001111 12555667788889999999999998876 22 33333
Q ss_pred HHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 143 NVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
..--.+|... |....|+.=++...+.. .-++.++--+-..+...|+.+.++...++..+
T Consensus 193 ~~Rakc~i~~----------------~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 193 QARAKCYIAE----------------GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHhc----------------CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 3333455554 45555555444433332 23344444455555666666666666666554
No 207
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.41 E-value=5.4 Score=44.38 Aligned_cols=147 Identities=11% Similarity=0.043 Sum_probs=90.4
Q ss_pred HHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 007684 72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCS 150 (593)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~~~~ 150 (593)
.|...|..++|.... ....++.+|..|-.+|.+..+++-|.--+..|... |. .+|=.+-
T Consensus 737 fyvtiG~MD~AfksI------------~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga-------RAlR~a~- 796 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSI------------QFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA-------RALRRAQ- 796 (1416)
T ss_pred EEEEeccHHHHHHHH------------HHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH-------HHHHHHH-
Confidence 455556666554443 23446778999999999999999998877777643 11 0110000
Q ss_pred ccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH
Q 007684 151 CKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGP 230 (593)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 230 (593)
+.+...+++ +..-....|.+++|..+|++.+. |-.|=+.|-..|.|++|+++-+.=-. +.. ..||-.
T Consensus 797 q~~~e~eak-vAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR--iHL-r~Tyy~ 863 (1416)
T KOG3617|consen 797 QNGEEDEAK-VAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR--IHL-RNTYYN 863 (1416)
T ss_pred hCCcchhhH-HHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc--eeh-hhhHHH
Confidence 000000000 00000113799999999999885 44556677889999999998764322 211 235555
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 007684 231 ALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m 251 (593)
-..-+-..+|++.|++.|++-
T Consensus 864 yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhc
Confidence 666666788899999988875
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=12 Score=37.01 Aligned_cols=114 Identities=11% Similarity=-0.046 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
+.+..-|-.|-..|...|+...|..-|....+.- .+|...+..+-. ++.+.+ .....++.++|+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~--------------~~~ta~a~~ll~ 217 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAG--------------QQMTAKARALLR 217 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcC--------------CcccHHHHHHHH
Confidence 3344457777777777777777777777766551 113333333322 222221 124556777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH
Q 007684 180 QMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232 (593)
Q Consensus 180 ~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 232 (593)
++.... +-|..+...|...+...|++.+|...|+.|.+.. |.......+|
T Consensus 218 ~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~i 267 (287)
T COG4235 218 QALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLI 267 (287)
T ss_pred HHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHH
Confidence 777654 4455566666667777777777777777776632 3333444444
No 209
>KOG3777 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.31 E-value=0.21 Score=51.74 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=73.3
Q ss_pred CcCeeeeccceecccCC--CCChhhHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcchHHHHHHHHhCCcEEeCCC
Q 007684 407 PFDAVIDGANVGLVNQH--NFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGALYTTPP 484 (593)
Q Consensus 407 ~~d~vidg~nv~~~~~~--~~~~~~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (593)
..-++|||.|||+-..| -|+..-+.-.++.+.++.. +.+-+++...+-+.. .+. +++.++.+...+-|||.
T Consensus 12 ~~P~~i~~~~~~ls~G~~~~f~~r~~~v~~~~~~~~~~--rd~tv~~~~~r~e~~---~p~--~~l~~l~~~~~~~ftp~ 84 (443)
T KOG3777|consen 12 LRPVVIHGSNLALSQGNEEVFSCRGILVSVDWFLQRGH--RDITVLVPSWRKEAT---RPD--AILRELEEKKILVFTPD 84 (443)
T ss_pred ccCceeeccchhhcccchhheecccceeehhhhhhhcc--cCcchhchhhhhcCC---chH--HHHHHHHhccccccCCC
Confidence 34579999999998876 3455566666777776432 333444444333321 222 37888888888999998
Q ss_pred C--------CCChHHHHHHHHhCCcEEEecchhhccccc
Q 007684 485 G--------SNDDWYWLYATVNCKSLLVTNDEMRDHLFQ 515 (593)
Q Consensus 485 ~--------s~DD~~~lyaa~~~~~~~vs~D~~rdh~~~ 515 (593)
. ..||||..--+++++..|++||..||-.-+
T Consensus 85 ~~~~~~r~~c~~~rf~~~~~~~s~~~~~~~dn~rd~~le 123 (443)
T KOG3777|consen 85 RSIQGSRVICYDRRFSASLARESDGIVSLNDNYRDLILE 123 (443)
T ss_pred hhhccceeeeehhhhHhhhhccccceecCCchHHHHHhh
Confidence 7 689999999999999999999999997543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=89.20 E-value=3.6 Score=44.41 Aligned_cols=203 Identities=11% Similarity=0.068 Sum_probs=107.4
Q ss_pred hhHHhhcCCccccchHHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHH--HHHH-----HHHHHHcCCCHHHHH
Q 007684 52 ITDIKQNRFSADLTTGLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEG--VLRH-----KLDMCSKRGDVFEAL 124 (593)
Q Consensus 52 ~~~m~~~g~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----li~~~~~~g~~~~A~ 124 (593)
+++|+++|-.|+.. ++...++-.|++.||..+|.+. ...+.. .|+- ...-+.+.|+-++-.
T Consensus 623 L~~~k~rge~P~~i--LlA~~~Ay~gKF~EAAklFk~~----------G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKK 690 (1081)
T KOG1538|consen 623 LEERKKRGETPNDL--LLADVFAYQGKFHEAAKLFKRS----------GHENRALEMYTDLRMFDYAQEFLGSGDPKEKK 690 (1081)
T ss_pred HHHHHhcCCCchHH--HHHHHHHhhhhHHHHHHHHHHc----------CchhhHHHHHHHHHHHHHHHHHhhcCChHHHH
Confidence 35788888777654 4455577789999999998221 111111 1221 122233444444444
Q ss_pred HHHHHHHHC--CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007684 125 RLYDDARSN--GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVA 202 (593)
Q Consensus 125 ~l~~~m~~~--g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~ 202 (593)
.+.++-.+. .++-....-..||++=... ..++-...+|-.+-+.++=+++- ..+..+...+..-+.+
T Consensus 691 mL~RKRA~WAr~~kePkaAAEmLiSaGe~~-------KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~ 759 (1081)
T KOG1538|consen 691 MLIRKRADWARNIKEPKAAAEMLISAGEHV-------KAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKK 759 (1081)
T ss_pred HHHHHHHHHhhhcCCcHHHHHHhhcccchh-------hhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhh
Confidence 444332221 1111112222222210000 00111111234444444443333 2344556666666667
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHH
Q 007684 203 KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-----------PELSALLKLSV 271 (593)
Q Consensus 203 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----------~t~~~Ll~~~~ 271 (593)
...+..|-++|..|-+. ..++......+++++|+.+-+...+ +.||+ .-|...-.+|.
T Consensus 760 l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 760 LDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred ccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHH
Confidence 78888899999888652 2366777788999999888776542 23332 22444456777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 007684 272 DAKKVDKVYEILHRLRT 288 (593)
Q Consensus 272 ~~g~~~~a~~~l~~m~~ 288 (593)
++|+..+|..+++++..
T Consensus 829 kAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 829 KAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhcchHHHHHHHHHhhh
Confidence 88888888888888755
No 211
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.94 E-value=5.5 Score=42.37 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=104.1
Q ss_pred HHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684 70 TLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149 (593)
Q Consensus 70 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~ 149 (593)
.....-.++++++.+.... . +--...|....+.++.-+-+.|-.+.|+.+...-..+ ..+.
T Consensus 268 fk~av~~~d~~~v~~~i~~-----~--~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLA 328 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAA-----S--NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELA 328 (443)
T ss_dssp HHHHHHTT-HHH-----HH-----H--HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHH
T ss_pred HHHHHHcCChhhhhhhhhh-----h--hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHH
Confidence 3344456666666555520 0 0111335666888888889999999999887653322 2333
Q ss_pred HccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH
Q 007684 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229 (593)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 229 (593)
.+ +|+++.|.++-++. .+...|..|...+.+.|+++.|.+.|.+.++ |.
T Consensus 329 l~----------------lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~ 377 (443)
T PF04053_consen 329 LQ----------------LGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FS 377 (443)
T ss_dssp HH----------------CT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HH
T ss_pred Hh----------------cCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------cc
Confidence 33 36888888765433 4778999999999999999999999987654 56
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 230 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
.|+--|.-.|+.++..++-+.....|- ++..+.++.-.|+.++..++|.+-
T Consensus 378 ~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 378 GLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 788889999999888888887776653 566666777778888888766553
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=88.88 E-value=3.5 Score=43.15 Aligned_cols=63 Identities=10% Similarity=-0.100 Sum_probs=55.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP----ELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
...++.+..+|.+.|++++|...|++..+. .|+.. +|..+..+|...|+.++|.+.+++..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467889999999999999999999998754 46643 5899999999999999999999999874
No 213
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.85 E-value=18 Score=32.78 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=78.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007684 124 LRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAK 203 (593)
Q Consensus 124 ~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~ 203 (593)
.++++-+.+.|+.|+...|..++.++.+.+ + ...+.++.+.++-+|.......+-.+..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~----------------~----~~~L~qllq~~Vi~DSk~lA~~LLs~~~- 72 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNG----------------Q----FSQLHQLLQYHVIPDSKPLACQLLSLGN- 72 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------C----HHHHHHHHhhcccCCcHHHHHHHHHhHc-
Confidence 345555667778888888888888777762 2 5556666777777776665555433322
Q ss_pred CChHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 007684 204 EDPEMAFDLVKQMKSFGIPPKLR-SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEI 282 (593)
Q Consensus 204 g~~~~A~~l~~~m~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~ 282 (593)
....+.++--+|.+. .. .|..++..+...|++-+|.++.+.... .+......++.+-.+.++...-..+
T Consensus 73 -~~~~~~Ql~lDMLkR-----L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V 142 (167)
T PF07035_consen 73 -QYPPAYQLGLDMLKR-----LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAV 142 (167)
T ss_pred -cChHHHHHHHHHHHH-----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHH
Confidence 233344444444331 12 456677778888888888877776422 1112234466666666665555555
Q ss_pred HHHHHH
Q 007684 283 LHRLRT 288 (593)
Q Consensus 283 l~~m~~ 288 (593)
++-..+
T Consensus 143 ~~ff~~ 148 (167)
T PF07035_consen 143 FRFFEE 148 (167)
T ss_pred HHHHHH
Confidence 555544
No 214
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=88.49 E-value=13 Score=37.70 Aligned_cols=122 Identities=10% Similarity=0.053 Sum_probs=92.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
.+..|.-|...|+...|.++..+.+ .|+..-|-..|.+++.. ++|++-..+-. . .-
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~----------------~~w~eL~~fa~---s-kK 235 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAEN----------------KDWDELEKFAK---S-KK 235 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhc----------------CCHHHHHHHHh---C-CC
Confidence 6777888889999988888866543 47888898899998887 48877666432 2 22
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 266 (593)
+ +.-|-.++.+|.+.|+.++|..++.. .++..-+..|.+.|++.+|.+.-.+.. |...+..+
T Consensus 236 s--PIGyepFv~~~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~k------d~~~L~~i 297 (319)
T PF04840_consen 236 S--PIGYEPFVEACLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKEK------DIDLLKQI 297 (319)
T ss_pred C--CCChHHHHHHHHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHcC------CHHHHHHH
Confidence 3 48899999999999999999998876 344678899999999999987755542 55555555
Q ss_pred HHHH
Q 007684 267 LKLS 270 (593)
Q Consensus 267 l~~~ 270 (593)
.+-+
T Consensus 298 ~~~~ 301 (319)
T PF04840_consen 298 LKRC 301 (319)
T ss_pred HHHC
Confidence 4444
No 215
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.03 E-value=24 Score=34.81 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=116.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC--ChH
Q 007684 131 RSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-DKVDPNEATFTSVARLAVAKE--DPE 207 (593)
Q Consensus 131 ~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~li~~~~~~g--~~~ 207 (593)
+..|.++...-.-.++..+...-........-+--..+..+.+|+.+|+.... ..+--|+.+.+.+++...... ...
T Consensus 104 ~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~ 183 (292)
T PF13929_consen 104 KSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLN 183 (292)
T ss_pred HHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchh
Confidence 35577777777666666655431110000000000123356677777764332 345668888888888877622 333
Q ss_pred HHHHHHHHHHh-CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 007684 208 MAFDLVKQMKS-FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES-GVVPEEPELSALLKLSVDAKKVDKVYEILHR 285 (593)
Q Consensus 208 ~A~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~ 285 (593)
.-.++.+-+.. .+-.++..+-..+|..+++.+++++-+++++.-... +..-|..-|..+|+.-.+.|+..-...+..+
T Consensus 184 alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 184 ALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred hHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 34455555543 445678888889999999999999999999987654 5566778899999999999998777666554
Q ss_pred -----HHHccCCCCHHHHHHHHHHHh
Q 007684 286 -----LRTLVRQVSESTFKIIEDWFD 306 (593)
Q Consensus 286 -----m~~~~~~~~~~t~~~l~~~~~ 306 (593)
+.+.++..++..-..|...|.
T Consensus 264 GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 264 GHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred CCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 355677788888888887774
No 216
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=87.89 E-value=6.7 Score=44.66 Aligned_cols=176 Identities=11% Similarity=0.018 Sum_probs=114.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCC--------------------CCcc
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENG--------------------DREN 165 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~--------------------~~~~ 165 (593)
.|..|-..|+...|...|..-|+...+..-. +....-.+...|++...++.+.++ --.+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4777777787777888888888877765311 334444455567666555443211 1224
Q ss_pred cccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH--HHHHhcCChhH
Q 007684 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL--FGFCKLGNTDK 243 (593)
Q Consensus 166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li--~~~~~~g~~~~ 243 (593)
...+++..|+.-|+...... +-|...+..+..+|..+|+...|.++|.+... +.|+ .+|.-.- ..-|..|..++
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHHH
Confidence 56688888999998887766 56788999999999999999999999998876 4455 3444333 33467889999
Q ss_pred HHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 244 AYEVDAHMGES------GVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 244 A~~l~~~m~~~------g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
|...+...... +..--..++-.+...+...|-..++..++++-
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 98888876521 11111233444444444555555555555443
No 217
>PRK11906 transcriptional regulator; Provisional
Probab=87.44 E-value=18 Score=38.12 Aligned_cols=158 Identities=9% Similarity=0.114 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 118 GDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSV 196 (593)
Q Consensus 118 g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l 196 (593)
-+.+.|+.+|.+..+. .+.|+-..-..++..|.-.... +..........+|.++-+...+.+ +-|..+...+
T Consensus 272 ~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~------~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~ 344 (458)
T PRK11906 272 ESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL------HGKSELELAAQKALELLDYVSDIT-TVDGKILAIM 344 (458)
T ss_pred HHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH------hcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 3577899999998832 3566654444444433221100 000012357788899999888888 7788888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 007684 197 ARLAVAKEDPEMAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 197 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~g 274 (593)
..+....++.+.|..+|++... +.||. .+|...-....-+|+.++|.+.+++..+ ...+.-.......++.|+.++
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence 8888889999999999999987 45774 4444444455568999999999998443 333333444455566776655
Q ss_pred CHHHHHHHHHH
Q 007684 275 KVDKVYEILHR 285 (593)
Q Consensus 275 ~~~~a~~~l~~ 285 (593)
.+.+..++-+
T Consensus 423 -~~~~~~~~~~ 432 (458)
T PRK11906 423 -LKNNIKLYYK 432 (458)
T ss_pred -hhhhHHHHhh
Confidence 5566665543
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=86.96 E-value=15 Score=39.99 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=72.9
Q ss_pred HHHHHHHHHcCCCHHHHHHH---------HHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRL---------YDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l---------~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l 177 (593)
+.+-+-.|..+|.+++|..+ ++.+... ..+.-.+++.=.+|.+-+ +-.+-+.+.-
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVR--------------dl~~L~li~E 622 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVR--------------DLRYLELISE 622 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHh--------------ccHHHHHHHH
Confidence 56666777888888887665 3333222 123445555555776643 2356666777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG----IPPKLRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 178 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
+++|+++|-.|+... +...|+-.|++.+|-++|.+-...+ .-.|.+.|. ...-|...|..++-..+.+
T Consensus 623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD-~aQE~~~~g~~~eKKmL~R 694 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFD-YAQEFLGSGDPKEKKMLIR 694 (1081)
T ss_pred HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHH-HHHHHhhcCChHHHHHHHH
Confidence 788999998898874 4556777888999988887643211 112233333 3444555555554444433
No 219
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.82 E-value=5.8 Score=39.06 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=49.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----ccCCCCHHHHHH
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT-----LVRQVSESTFKI 300 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~-----~~~~~~~~t~~~ 300 (593)
.++..++..+...|+.+.+.+.++++.... +-++..|..|+.+|.+.|+...|...|+++.+ .|+.|.+.+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345556666666666666666666665432 23566666666666666666666666666543 566676666666
Q ss_pred HHHHHhc
Q 007684 301 IEDWFDS 307 (593)
Q Consensus 301 l~~~~~~ 307 (593)
.......
T Consensus 233 y~~~~~~ 239 (280)
T COG3629 233 YEEILRQ 239 (280)
T ss_pred HHHHhcc
Confidence 6655433
No 220
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=84.90 E-value=39 Score=34.74 Aligned_cols=166 Identities=13% Similarity=0.025 Sum_probs=97.6
Q ss_pred HHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 107 LRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 107 ~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
+-.++.+ -.-.|+.+.|.+-|+.|... |...... |. +|.... +.|..+-|...-+..-+
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllG--LRgLyleAq-------------r~GareaAr~yAe~Aa~ 182 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLG--LRGLYLEAQ-------------RLGAREAARHYAERAAE 182 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHh--HHHHHHHHH-------------hcccHHHHHHHHHHHHh
Confidence 3344444 33469999999999988864 2222111 22 333321 13677777766665544
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCc--ccHHHHHHHHHhc---CChhHHHHHHHHHHhCCCC
Q 007684 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPKL--RSYGPALFGFCKL---GNTDKAYEVDAHMGESGVV 257 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~--~ty~~li~~~~~~---g~~~~A~~l~~~m~~~g~~ 257 (593)
.- +--.-...+++...|..|+||.|+++++.-+. .-+.++. +.-..|+.+-+.. .+...|.+.-.+ ...+.
T Consensus 183 ~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~ 259 (531)
T COG3898 183 KA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLA 259 (531)
T ss_pred hc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcC
Confidence 32 22335677888999999999999999998765 3344553 3334444433221 233344443333 23455
Q ss_pred CCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684 258 PEEPE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293 (593)
Q Consensus 258 p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~ 293 (593)
||.+- -..--.++.+.|+..++-.+++.+-+..-.|
T Consensus 260 pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP 296 (531)
T COG3898 260 PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP 296 (531)
T ss_pred CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence 66544 2233467788999999999999997744333
No 221
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=84.70 E-value=39 Score=32.78 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=33.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY----GPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty----~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
....+...|++++|.+.|+++... -|+...- -.+..+|-+.++.++|...+++..+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~ 97 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR 97 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334445567777777777777652 2332111 1244566677777777777777664
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=84.46 E-value=30 Score=37.27 Aligned_cols=167 Identities=16% Similarity=0.107 Sum_probs=107.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQ-----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
+..+++..+-.||-+.+++++.+..+. |+.-.. ..|+..+..+... ++ .....+.|.++++.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~----------~~--~~~~~~~a~~lL~~ 258 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGI----------DG--EDVPLEEAEELLEE 258 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCC----------cc--cCCCHHHHHHHHHH
Confidence 344556677789999999998886654 333222 2333333322221 00 23588999999999
Q ss_pred HHhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHhCC--C-CCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 007684 181 MITDKVDPNEATFTSV-ARLAVAKEDPEMAFDLVKQMKSFG--I-PPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGV 256 (593)
Q Consensus 181 M~~~g~~p~~~ty~~l-i~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~ 256 (593)
+.+.- |+..-|... .+.+...|++++|.+.|++..... . +.....|=-+.-.+.-..++++|.+.|..+.+..-
T Consensus 259 ~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 259 MLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 99774 676655543 456677899999999999764311 1 11223344466778889999999999999986432
Q ss_pred CCCHHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHH
Q 007684 257 VPEEPELSALLKLS-VDAKKV-------DKVYEILHRLRT 288 (593)
Q Consensus 257 ~p~~~t~~~Ll~~~-~~~g~~-------~~a~~~l~~m~~ 288 (593)
..-.+|.-+..+| ...|+. ++|.++|.+...
T Consensus 337 -WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 337 -WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred -cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3445566555544 346666 777777777643
No 223
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=84.32 E-value=3.2 Score=36.45 Aligned_cols=112 Identities=10% Similarity=0.089 Sum_probs=74.7
Q ss_pred CcccHHHHHHHHHHhCCChhhHHhhcCCccccch---HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHH
Q 007684 33 NCHTYRSLLCWHMHSFTKPITDIKQNRFSADLTT---GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRH 109 (593)
Q Consensus 33 d~~~~~~ll~~~~~~~~~~~~~m~~~g~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (593)
|.-.|..++..+.. .|++++..++..+ |.++.-.+..+...-...+.+.+. .-....-....+...|+.
T Consensus 13 nL~~w~~fi~~~~~-------y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~-~l~~~~~~~~~~~ssf~~ 84 (145)
T PF13762_consen 13 NLEVWKTFINSHLP-------YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLH-FLNTDNIIGWLDNSSFHI 84 (145)
T ss_pred hHHHHHHHHHHHHH-------HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHH-HhhHHHHhhhcccchHHH
Confidence 44455555555543 3666667766655 777766665555555444443331 000101122345556999
Q ss_pred HHHHHHcCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 007684 110 KLDMCSKRGD-VFEALRLYDDARSNGITLSQHHYNVLLYVCSCK 152 (593)
Q Consensus 110 li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~ 152 (593)
++.+.++... --.+..+|..|++.+.+++..-|..||.+|.++
T Consensus 85 if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 85 IFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 9999988877 667889999999999999999999999999986
No 224
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.19 E-value=2.2 Score=27.40 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 007684 193 FTSVARLAVAKEDPEMAFDLVKQ 215 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~~ 215 (593)
|+.|...|.+.|++++|.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666555
No 225
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=84.16 E-value=27 Score=34.45 Aligned_cols=115 Identities=10% Similarity=0.000 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhc---CChhHHHH
Q 007684 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKL---GNTDKAYE 246 (593)
Q Consensus 171 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~---g~~~~A~~ 246 (593)
.+....-++.=...+ +-|...|-.|...|...|+.+.|..-|.+..+ +.|+ ...+..+-.++... .+-.+|.+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 444444444434444 66888999999999999999999999999877 2333 44444444444433 35568999
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 007684 247 VDAHMGESGVVPEEP-ELSALLKLSVDAKKVDKVYEILHRLRTLV 290 (593)
Q Consensus 247 l~~~m~~~g~~p~~~-t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~ 290 (593)
+|+++.... |+.. ...-|-..+...|++.+|...++.|.+..
T Consensus 215 ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 215 LLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 999998643 5544 46666678889999999999999998843
No 226
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.00 E-value=63 Score=34.41 Aligned_cols=71 Identities=13% Similarity=0.045 Sum_probs=50.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH--HHHHH
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKSFG-IPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE--LSALL 267 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~Ll 267 (593)
+...+-+.|+.++|.+.+++|.+.. ..-.......||.++...+...++..++.+..+... |...+ |++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaAL 338 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAAL 338 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHH
Confidence 4445557899999999999997532 212244666799999999999999999999864333 44444 66544
No 227
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.95 E-value=36 Score=33.60 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-CCCCCCHHHHHHH
Q 007684 119 DVFEALRLYDDARS-NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-DKVDPNEATFTSV 196 (593)
Q Consensus 119 ~~~~A~~l~~~m~~-~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-~g~~p~~~ty~~l 196 (593)
.+.+|+.+|+...- ..+--|......||+...... +-....-.|+.+-+.. .|-.++..+...+
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~--------------~~~l~alYEvV~~l~~t~~~~l~~~vi~~I 208 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDE--------------NTKLNALYEVVDFLVSTFSKSLTRNVIISI 208 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcc--------------ccchhhHHHHHHHHHhccccCCChhHHHHH
Confidence 35677777773221 335557777778888666521 0133344455555543 3457888999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC-CCCCCcccHHHHHHHHHhcCChhHHHHHHHH-----HHhCCCCCCHHHHHHHHH
Q 007684 197 ARLAVAKEDPEMAFDLVKQMKSF-GIPPKLRSYGPALFGFCKLGNTDKAYEVDAH-----MGESGVVPEEPELSALLK 268 (593)
Q Consensus 197 i~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~Ll~ 268 (593)
|..+++.++|.+-+++++..... +..-|.+-|...|..-.+.|+..-+..+..+ +++.|+..+...-.+|-+
T Consensus 209 l~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 209 LEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 99999999999999999988764 5556789999999999999999777776654 124455555554444433
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=83.35 E-value=29 Score=30.00 Aligned_cols=140 Identities=15% Similarity=0.101 Sum_probs=82.4
Q ss_pred HHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-------CCCCCCCCCcccccccHHHHHHHH
Q 007684 108 RHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCG-------SESSENGDRENDSNLGLKRGFEIF 178 (593)
Q Consensus 108 ~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~-------~~~~~~~~~~~~~~g~~~~a~~l~ 178 (593)
..||.+ ..-.|.+++..+++.+..... +..-||-.|.--..... .+..+.+.| ...+|++.+....+
T Consensus 4 kkLmeAK~~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFD-is~C~NlKrVi~C~ 79 (161)
T PF09205_consen 4 KKLMEAKERILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFD-ISKCGNLKRVIECY 79 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS--GGG-S-THHHHHHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcC-chhhcchHHHHHHH
Confidence 344554 445688999999998876542 44445544432111100 000001111 23466777777766
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684 179 QQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257 (593)
Q Consensus 179 ~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 257 (593)
-.+- -+..-....+......|+-|.-.++..++.+.+ .|+....--+..||.+.|+..+|.+++.+.-+.|++
T Consensus 80 ~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 80 AKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 5543 233456777888999999999999999987533 366666667899999999999999999999888864
No 229
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=83.29 E-value=37 Score=31.22 Aligned_cols=126 Identities=9% Similarity=0.014 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684 136 TLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215 (593)
Q Consensus 136 ~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 215 (593)
.|++..--.|-.+.... |+..+|...|++...--..-|....-.+.++....+++.+|...+++
T Consensus 86 ApTvqnr~rLa~al~el----------------Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 86 APTVQNRYRLANALAEL----------------GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred chhHHHHHHHHHHHHHh----------------hhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 55655555555566665 69999999999988766677889999999999999999999999999
Q ss_pred HHhCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 007684 216 MKSFGIPPKL---RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYE 281 (593)
Q Consensus 216 m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~ 281 (593)
+-+.. |.- .+.-.+-..|...|..+.|+.-|+..... -|+...-..--..+.+.|+.+++..
T Consensus 150 l~e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 150 LMEYN--PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HhhcC--CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 98754 332 23445667888899999999999988754 3444433333334556776555543
No 230
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.04 E-value=11 Score=37.11 Aligned_cols=79 Identities=10% Similarity=0.115 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 007684 190 EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-----SGVVPEEPELS 264 (593)
Q Consensus 190 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 264 (593)
..+++.++..+...|+.+.+.+.++++....- -+...|-.+|.+|.+.|+...|...|+.+.. .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 35788899999999999999999999988543 4578999999999999999999999998874 68888877766
Q ss_pred HHHHH
Q 007684 265 ALLKL 269 (593)
Q Consensus 265 ~Ll~~ 269 (593)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=82.90 E-value=29 Score=31.24 Aligned_cols=88 Identities=7% Similarity=-0.165 Sum_probs=61.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007684 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278 (593)
Q Consensus 199 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~ 278 (593)
-+...|++++|..+|.-+.-.+. -+.+-+.-|-.++-..+++++|...|...-..+. -|...+-..-.++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 34568999999999998876443 2233334455555567899999999887664332 222334456677888899999
Q ss_pred HHHHHHHHHH
Q 007684 279 VYEILHRLRT 288 (593)
Q Consensus 279 a~~~l~~m~~ 288 (593)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9998888876
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=82.73 E-value=31 Score=29.89 Aligned_cols=114 Identities=11% Similarity=0.040 Sum_probs=78.9
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
+.......+++.+...+ ..+...+|.+|..|++.+ .++..+.++. .++......++..|-+.+.++++.-++
T Consensus 21 ~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 21 NLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred CcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHH
Confidence 47889999999988877 477888999999999764 3444444442 134455556888888888888999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDA-KKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~-g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
.++.. +...+..+... ++.+.|.+++.+- -++..|..++..+
T Consensus 93 ~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~ 135 (140)
T smart00299 93 KKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKAL 135 (140)
T ss_pred HhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHH
Confidence 88731 33344444444 7888888877762 2466666666554
No 233
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=82.49 E-value=20 Score=30.89 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=63.1
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHH---HHHHHhc
Q 007684 199 LAVAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSAL---LKLSVDA 273 (593)
Q Consensus 199 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~L---l~~~~~~ 273 (593)
+++..|+++.|++.|.+... +.|. ...||.=..++.-+|+.++|.+=+++..+ .|-+ +-....+. -..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 56778999999999988876 3343 57899999999999999999888887765 4433 22223333 2345667
Q ss_pred CCHHHHHHHHHHHHHccC
Q 007684 274 KKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 274 g~~~~a~~~l~~m~~~~~ 291 (593)
|+.|.|..=|+...+.|-
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 888888877777665443
No 234
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=82.37 E-value=53 Score=32.60 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=37.3
Q ss_pred ChHHHHH-HHHHHHhCCCCCCcccHHHHHHHHHhcCChhH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 007684 205 DPEMAFD-LVKQMKSFGIPPKLRSYGPALFGFCKLGNTDK-----AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDK 278 (593)
Q Consensus 205 ~~~~A~~-l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~-----A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~ 278 (593)
.+++... +-++|++.++ |+...-..+-++....+.+.+ |..+++++ .+|.-|+.+++..|+.+-
T Consensus 270 p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 270 PVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred CHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCChHHH
Confidence 3444433 3345677777 776544444444444444444 33444443 468889999999887654
Q ss_pred H
Q 007684 279 V 279 (593)
Q Consensus 279 a 279 (593)
.
T Consensus 340 ~ 340 (412)
T KOG2297|consen 340 E 340 (412)
T ss_pred H
Confidence 3
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.23 E-value=56 Score=31.81 Aligned_cols=127 Identities=9% Similarity=-0.005 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH-----HHHhcCChhH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF-----GFCKLGNTDK 243 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~-----~~~~~g~~~~ 243 (593)
|.+.-.+.++.+..+..-+-+.+-.+.|.+.-.+.||.+.|...|++..+..-..+..+++.++. .|.-++++..
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 46777888999988877777889999999999999999999999998876443456666665543 3444678888
Q ss_pred HHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHH
Q 007684 244 AYEVDAHMGESGVVPEEPEL--SALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKI 300 (593)
Q Consensus 244 A~~l~~~m~~~g~~p~~~t~--~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~ 300 (593)
|...|.+..+..-. |...- -+|+..| .|+..+|.+.++.|.+ +-|.+.+-+.
T Consensus 271 a~r~~~~i~~~D~~-~~~a~NnKALcllY--lg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 271 AHRFFTEILRMDPR-NAVANNNKALCLLY--LGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred HHHHHhhccccCCC-chhhhchHHHHHHH--HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 88888887754321 22222 3344444 6888999999999876 4455555443
No 236
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=81.16 E-value=2.9 Score=26.85 Aligned_cols=23 Identities=17% Similarity=0.066 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 007684 228 YGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 228 y~~li~~~~~~g~~~~A~~l~~~ 250 (593)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555554
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.08 E-value=60 Score=32.11 Aligned_cols=170 Identities=19% Similarity=0.120 Sum_probs=99.5
Q ss_pred HHcCCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHcc-CCCCCCCCCCCcccccccHHHHHHHHHH-HHh
Q 007684 114 CSKRGDVFEALRLYDDARSNG--ITLSQ------HHYNVLLYVCSCK-CGSESSENGDRENDSNLGLKRGFEIFQQ-MIT 183 (593)
Q Consensus 114 ~~~~g~~~~A~~l~~~m~~~g--~~p~~------~ty~~ll~~~~~~-~~~~~~~~~~~~~~~~g~~~~a~~l~~~-M~~ 183 (593)
..+.|+.+.|..++.+....- ..|+. ..||.-..++.+. . ......-+++|.++++. -..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~----------~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDK----------YEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCC----------hHHHHHHHHHHHHHHHhhhhc
Confidence 356799999999999887543 23332 2333333344432 1 00000124555566544 111
Q ss_pred CCCCCCH-----HHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 184 DKVDPNE-----ATFTSVARLAVAKEDPE---MAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 184 ~g~~p~~-----~ty~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
....|+. .++..++.+|...+..+ +|.++++.+... . |+ ..+|-.-|..+.+.++.+.+.+++.+|...
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-Y-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-C-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 1223333 46777888888877654 566666666442 2 44 455656677777789999999999999864
Q ss_pred CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHccCCCCHH
Q 007684 255 GVVPEEPELSALLKLSVD--AKKVDKVYEILHRLRTLVRQVSES 296 (593)
Q Consensus 255 g~~p~~~t~~~Ll~~~~~--~g~~~~a~~~l~~m~~~~~~~~~~ 296 (593)
- ...+..+...+..+.. ....+.|...+.++....+.|++.
T Consensus 151 ~-~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 151 V-DHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred c-ccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 2 2234445555555522 223456777788887777777775
No 238
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=80.66 E-value=54 Score=37.84 Aligned_cols=74 Identities=8% Similarity=0.034 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 007684 206 PEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE-PELSALLKLSVDAKKVDKVYEIL 283 (593)
Q Consensus 206 ~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Ll~~~~~~g~~~~a~~~l 283 (593)
...|+..|=+-.+ +.|+ ...|..|-.-|+..-+...|..-|....+.. ++. ....+..+.|++...++.|..+.
T Consensus 474 ~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 474 SALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 5556655554443 3344 4678888899998888889999999887533 444 44788899999999999999883
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=80.40 E-value=15 Score=39.57 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=85.8
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 107 LRHKLDMCSK----RGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 107 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
|+..+..++. ..+++.|.++++.+.++ -|+...|...-.-+... .|++++|++.|+...
T Consensus 232 y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~---------------~g~~~~Ai~~~~~a~ 294 (468)
T PF10300_consen 232 YHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERL---------------KGNLEEAIESFERAI 294 (468)
T ss_pred HHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH---------------hcCHHHHHHHHHHhc
Confidence 5555555444 46889999999999988 78888876665533332 269999999999765
Q ss_pred hCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH-HHHHhcCCh-------hHHHHHHHHH
Q 007684 183 TDKV---DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL-FGFCKLGNT-------DKAYEVDAHM 251 (593)
Q Consensus 183 ~~g~---~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li-~~~~~~g~~-------~~A~~l~~~m 251 (593)
.... +.....+--+.-.++-..+|++|.+.|..+.+..- -+..+|.-+. .++...|+. ++|.++|.+.
T Consensus 295 ~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 295 ESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred cchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 3211 22333444455567788999999999999987432 2334444333 333456777 7888888876
Q ss_pred H
Q 007684 252 G 252 (593)
Q Consensus 252 ~ 252 (593)
.
T Consensus 374 p 374 (468)
T PF10300_consen 374 P 374 (468)
T ss_pred H
Confidence 4
No 240
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.37 E-value=47 Score=29.79 Aligned_cols=86 Identities=19% Similarity=0.243 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 247 (593)
++.+++..+++.|..... .|...++-.. .+...|+|++|.++|+++.... ...-|...+.++|-...-|..+..
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~---~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA---PGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHcCChHHHH
Confidence 466677777776665321 1222233333 3566777777777777765532 233455566666655555555555
Q ss_pred HHH-HHhCCCCCC
Q 007684 248 DAH-MGESGVVPE 259 (593)
Q Consensus 248 ~~~-m~~~g~~p~ 259 (593)
+.. +.+.+-.|+
T Consensus 99 ~A~evle~~~d~~ 111 (160)
T PF09613_consen 99 YADEVLESGADPD 111 (160)
T ss_pred HHHHHHhcCCChH
Confidence 544 444443333
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=78.78 E-value=18 Score=37.18 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=76.7
Q ss_pred cccccccHHHHHHHHHHHHh-----CCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH
Q 007684 164 ENDSNLGLKRGFEIFQQMIT-----DKVD---------PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYG 229 (593)
Q Consensus 164 ~~~~~g~~~~a~~l~~~M~~-----~g~~---------p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 229 (593)
.+.+.|++..|..-|+.... .+.. .-..++.+|.-.|.+.+++..|++.-++....+- +|....=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHH
Confidence 35566888888888777443 1111 2235677788888888888888888888776432 3333322
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHH
Q 007684 230 PALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD-AK-KVDKVYEILHRLRT 288 (593)
Q Consensus 230 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~-~g-~~~~a~~~l~~m~~ 288 (593)
-=-.+|...|+++.|...|+.+.+ +.|+..+-.+=|..|.+ .. ..++..++|..|-.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 256778888888888888888874 45666665444444432 22 23344556666643
No 242
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.43 E-value=47 Score=29.34 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKV-DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 247 (593)
++.+++..+++.|..... .+...+|-.. .+...|+|++|.++|++..+.+. ...|...+.++|-...-|-.+..
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChHHHH
Confidence 477788888887765321 1233344443 35677888888888888876432 23566677777765544444444
Q ss_pred H
Q 007684 248 D 248 (593)
Q Consensus 248 ~ 248 (593)
+
T Consensus 99 ~ 99 (153)
T TIGR02561 99 H 99 (153)
T ss_pred H
Confidence 3
No 243
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.42 E-value=19 Score=33.01 Aligned_cols=97 Identities=10% Similarity=0.020 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLK 268 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~ 268 (593)
..+..+..-|++.|+.+.|.+.+.++.+....|. ...+-.+|......+++..+.....+....--.+......+=+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4688899999999999999999999988665555 35667788888899999998888887764322222111111111
Q ss_pred H-----HHhcCCHHHHHHHHHHHH
Q 007684 269 L-----SVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 269 ~-----~~~~g~~~~a~~~l~~m~ 287 (593)
+ +...+++.+|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1 234667777777666553
No 244
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.24 E-value=51 Score=34.61 Aligned_cols=138 Identities=10% Similarity=0.057 Sum_probs=91.9
Q ss_pred ccccHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH--hc
Q 007684 167 SNLGLKRGFEIFQQMITDKVDPN------EATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFC--KL 238 (593)
Q Consensus 167 ~~g~~~~a~~l~~~M~~~g~~p~------~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~--~~ 238 (593)
+++++++|.++|.+..... ..+ +..-+-+|++|.. .+.|.....+.+..+. .| ...|-++..+.. +.
T Consensus 18 kq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 3579999999999987543 222 3445567777765 5666666666666552 24 345556665543 67
Q ss_pred CChhHHHHHHHHHHhC--CCCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCC----CCHHHHHH
Q 007684 239 GNTDKAYEVDAHMGES--GVVPE------------EPELSALLKLSVDAKKVDKVYEILHRLRTLVRQ----VSESTFKI 300 (593)
Q Consensus 239 g~~~~A~~l~~~m~~~--g~~p~------------~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~----~~~~t~~~ 300 (593)
++.++|.+.+....+. +-.|. ..-=+..+..+...|++.++..++++|.+.-.. .+..+|+-
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999999998888764 32221 111234556677899999999999998775444 88888887
Q ss_pred HHHHHhcch
Q 007684 301 IEDWFDSVD 309 (593)
Q Consensus 301 l~~~~~~~~ 309 (593)
+.-.+++.-
T Consensus 173 ~vlmlsrSY 181 (549)
T PF07079_consen 173 AVLMLSRSY 181 (549)
T ss_pred HHHHHhHHH
Confidence 666665544
No 245
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=77.05 E-value=57 Score=29.53 Aligned_cols=128 Identities=9% Similarity=0.095 Sum_probs=87.3
Q ss_pred hcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHH
Q 007684 98 ARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEI 177 (593)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l 177 (593)
.+..++...+..+|+.+.+.|.... +..+.+.++-+|.......|-...... ..-.+-|+++
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~--------------~~~~Ql~lDM 84 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQY--------------PPAYQLGLDM 84 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccC--------------hHHHHHHHHH
Confidence 5566778889999999999998665 445556676677665555443333221 1235566777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684 178 FQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG 255 (593)
Q Consensus 178 ~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 255 (593)
+.++. ..+..++..+...|++-+|.++.+..... +......++.+..+.+|...=..+|+-..+.+
T Consensus 85 LkRL~--------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 85 LKRLG--------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHhh--------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 76665 34677888999999999999999876432 22334558888888888877666666665433
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=76.54 E-value=42 Score=32.46 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=22.6
Q ss_pred HhhhhhhHHhHHHHHHHHHhcCCcCeeeec
Q 007684 385 LACQREVRSDFNKFQEWLGRHGPFDAVIDG 414 (593)
Q Consensus 385 l~~~~~~~~a~~~f~~~l~~~~~~d~vidg 414 (593)
|.+.|....|...|+++++.-.....+-++
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~ea 206 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREA 206 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHH
Confidence 778889999999999999985444444433
No 247
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.40 E-value=6.2 Score=25.70 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~ 217 (593)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466677777777777777777776664
No 248
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.96 E-value=12 Score=37.18 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=79.4
Q ss_pred hcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHH
Q 007684 98 ARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN---GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRG 174 (593)
Q Consensus 98 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a 174 (593)
.|......+-..++..-.+...++.+..++-.++.. -..|+...| +.+.+|.+- +.+++
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllky-----------------~pq~~ 119 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLKY-----------------DPQKA 119 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHcc-----------------ChHHH
Confidence 334444444667777777788899999888877744 234444333 456777775 67899
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 007684 175 FEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF 219 (593)
Q Consensus 175 ~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 219 (593)
+.++..=.+-|+-||..+++.+|+.+.+.++..+|.++.-.|...
T Consensus 120 i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 120 IYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999998889999999999999999999999999999998888653
No 249
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.29 E-value=26 Score=38.88 Aligned_cols=96 Identities=18% Similarity=0.089 Sum_probs=75.9
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|...+|.++-.+.+ -||-.-|-.=+.+++..++|++-+++-+.++. ..-|.+.+.+|.+.|+.++|...+
T Consensus 698 g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYi 767 (829)
T KOG2280|consen 698 GQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYI 767 (829)
T ss_pred cchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhh
Confidence 57788888877776 78888888889999999999987776655442 477889999999999999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAKKVDKVYEIL 283 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l 283 (593)
.+.- +.. -...+|.+.|++.+|.++-
T Consensus 768 prv~------~l~---ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 768 PRVG------GLQ---EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hccC------ChH---HHHHHHHHhccHHHHHHHH
Confidence 8762 222 5778888889888887653
No 250
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.21 E-value=66 Score=28.86 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=68.0
Q ss_pred HHHHHHHHH---HHhcCChHHHHHHHHHHHhCCCCCCcccHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 191 ATFTSVARL---AVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPA-LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266 (593)
Q Consensus 191 ~ty~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 266 (593)
.+.+.||.. -.+.++.+++..++..|.- +.|.......+ ..-+...|++.+|..+|+++.+.+ |...--.+|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 344555544 4567899999999999976 55765443322 233568999999999999997654 444545566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHhcch
Q 007684 267 LKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 267 l~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~~~~ 309 (593)
+..|.....-..-...-..+.+.+ +++.+-.++........
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~--~d~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESG--ADPDARALVRALLARAD 124 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcC--CChHHHHHHHHHHHhcc
Confidence 666655443222233334454443 34555544444444443
No 251
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.43 E-value=25 Score=32.18 Aligned_cols=70 Identities=10% Similarity=0.211 Sum_probs=57.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCH
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEE--PELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSE 295 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~ 295 (593)
..+..+..-|++.|+.++|.+.|.++.+....+.. ..+-.+|+.+...|++..+...+.+.....-....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 57888999999999999999999999986655554 34778899999999999999998888764444433
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.17 E-value=8 Score=26.02 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
++..+..+|...|++++|.+++++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666666666666655
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.04 E-value=98 Score=30.71 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=86.7
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++.+|..+|....... +-+...--.++.+|...|+.+.|..++..+-..--......-..-|..+.+.....+...+-
T Consensus 148 e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 148 EDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred cchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 68899999999887754 23345666788999999999999999998754221111122223344455555555444444
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHhcch
Q 007684 249 AHMGESGVVP-EEPELSALLKLSVDAKKVDKVYEILHRLRTLVR-QVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 249 ~~m~~~g~~p-~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~-~~~~~t~~~l~~~~~~~~ 309 (593)
.+.-. .| |...--.|-..+...|+.+.|.+.+-.+.+... --+...-..++..|.-.+
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44432 26 444456677888889999999887766654333 234445566776664433
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=71.66 E-value=66 Score=27.80 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=65.0
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCC--cccHHHHHHHHHhcCChhHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPK--LRSYGPALFGFCKLGNTDKAY 245 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~--~~ty~~li~~~~~~g~~~~A~ 245 (593)
|+++.|++.|.+....- +-....||+-..++--.|+.++|++=+++..+ .|-+-. ..+|--=-..|...|+-++|.
T Consensus 57 g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR 135 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAAR 135 (175)
T ss_pred cchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHH
Confidence 79999999999987654 55778999999999999999999999988876 332211 123333344566788999998
Q ss_pred HHHHHHHhCC
Q 007684 246 EVDAHMGESG 255 (593)
Q Consensus 246 ~l~~~m~~~g 255 (593)
.=|+..-+.|
T Consensus 136 ~DFe~AA~LG 145 (175)
T KOG4555|consen 136 ADFEAAAQLG 145 (175)
T ss_pred HhHHHHHHhC
Confidence 8888776655
No 255
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.41 E-value=72 Score=28.11 Aligned_cols=101 Identities=7% Similarity=0.082 Sum_probs=74.6
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCC---C--CCCcccHHHHHHHHHhcCChh-HHHHHHHH
Q 007684 179 QQMITDKVDPNEA--TFTSVARLAVAKEDPEMAFDLVKQMKSFG---I--PPKLRSYGPALFGFCKLGNTD-KAYEVDAH 250 (593)
Q Consensus 179 ~~M~~~g~~p~~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g---~--~p~~~ty~~li~~~~~~g~~~-~A~~l~~~ 250 (593)
..|.+.+..++.. ..|+++.-.+.-++.....++++.+.... + .-+-.+|.+++.+.++..-.. .+..+|.-
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~ 105 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNF 105 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHH
Confidence 3455566666664 46888888888889999999888884311 1 245578999999997776633 57888999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007684 251 MGESGVVPEEPELSALLKLSVDAKKVDKV 279 (593)
Q Consensus 251 m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a 279 (593)
|++.+.+++..-|..||.++.+.-..+..
T Consensus 106 Lk~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 106 LKKNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 99888899999999999998776444444
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=70.96 E-value=80 Score=28.46 Aligned_cols=83 Identities=14% Similarity=-0.055 Sum_probs=64.0
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
|++++|..+|.-+...+ .-|..-+..|...+-..+++++|...|......+. -|.+.+=.+-.+|...|+.+.|...|
T Consensus 51 Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 51 GRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHH
Confidence 69999999999887755 23444456666677778999999999998866443 34455555788999999999999999
Q ss_pred HHHHh
Q 007684 249 AHMGE 253 (593)
Q Consensus 249 ~~m~~ 253 (593)
+...+
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 98876
No 257
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.73 E-value=62 Score=33.41 Aligned_cols=128 Identities=15% Similarity=0.072 Sum_probs=85.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHHHccCCCCCCCCCCCcccccccHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSN-----GITLS---------QHHYNVLLYVCSCKCGSESSENGDRENDSNLGLK 172 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~---------~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~ 172 (593)
..---+.|.+.|++..|..-|+...+. +..+. ..+++-|.-.|.+ .+++.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK----------------l~~~~ 274 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK----------------LKEYK 274 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh----------------hhhHH
Confidence 333445688999999999998886533 11111 1111111112333 35889
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH-HhcCChh-HHHHHHHH
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF-CKLGNTD-KAYEVDAH 250 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~-~~~g~~~-~A~~l~~~ 250 (593)
.|++.-++.+..+ ++|.-..--=-.+|...|+++.|+..|+++.+ +.|+-..-+.=|..+ -+..+.. +..++|..
T Consensus 275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877 67777777778899999999999999999998 567765544444444 3444333 44677887
Q ss_pred HHh
Q 007684 251 MGE 253 (593)
Q Consensus 251 m~~ 253 (593)
|..
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 763
No 258
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.59 E-value=59 Score=26.70 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 243 KAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 243 ~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
+..+-++.+....+.|+.....+.+++|.+-+++.-|.++|+-++.. +......|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 34445555555666677777777777777777777777766666542 2222335555444
No 259
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=69.59 E-value=1.2 Score=39.24 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=24.0
Q ss_pred CCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684 162 DRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 162 ~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 214 (593)
+..+.+.+..+....+++.+...+..-+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 33344444455555555555544433444445555555555544444444443
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=69.01 E-value=1.6e+02 Score=31.21 Aligned_cols=137 Identities=8% Similarity=0.043 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHHHh-CCCCCCH-HHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 007684 170 GLKRGFEIFQQMIT-DKVDPNE-ATFTSVARLAVA---------KEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKL 238 (593)
Q Consensus 170 ~~~~a~~l~~~M~~-~g~~p~~-~ty~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 238 (593)
..+.|+.+|.+... ..+.|+- ..|..+.-.+.. ..+..+|.++-++..+.+- -|...-..+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 67889999999872 2334544 345544444332 2334566666666666432 3445555566666778
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHhcch
Q 007684 239 GNTDKAYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILHRLRT-LVRQVSESTFKIIEDWFDSVD 309 (593)
Q Consensus 239 g~~~~A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~-~~~~~~~~t~~~l~~~~~~~~ 309 (593)
++.+.|..+|++... +.||... |-..--.+.-+|+.++|.+.+++..+ +..+.........+..|+..+
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~ 422 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP 422 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc
Confidence 889999999999875 4476544 33333344558999999999998443 333333344445554555444
No 261
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=68.94 E-value=58 Score=33.80 Aligned_cols=165 Identities=8% Similarity=0.021 Sum_probs=93.0
Q ss_pred HHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007684 72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDM--CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVC 149 (593)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~ 149 (593)
.+.-.|+.++|...-..++ . ..+...+...+.+ +--.++.+.|...|.+.... .|+...-.++-..+
T Consensus 178 cl~~~~~~~~a~~ea~~il-------k--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDIL-------K--LDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMP 246 (486)
T ss_pred hhhhcccchhHHHHHHHHH-------h--cccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhH
Confidence 4555666666666654444 1 2233334444444 33457888888888877765 34444333322211
Q ss_pred HccCCCCCCCCCCCcccccccHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-c
Q 007684 150 SCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT---DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK-L 225 (593)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~---~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 225 (593)
... +..+.--+...++|.+..|.+.|.+-.. .++.|+...|-.......+.|+.++|+.--++..+ +.|. .
T Consensus 247 k~l---e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syi 321 (486)
T KOG0550|consen 247 KKL---EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYI 321 (486)
T ss_pred HHH---HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHH
Confidence 110 0011112334566899999999998775 34567777788888888889999999887777665 2221 1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
..|-.-..++...+++++|.+-|+...
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222223333455666666655544
No 262
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.56 E-value=26 Score=34.91 Aligned_cols=47 Identities=11% Similarity=0.183 Sum_probs=25.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 240 NTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 240 ~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
++++++.+...=...|+-||..+++.||+.+.+.+++.+|..+.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555554443
No 263
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.32 E-value=1e+02 Score=28.18 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HH---HHHccCCCCCCCCCCCcccccccHHHHHHH
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVL--LY---VCSCKCGSESSENGDRENDSNLGLKRGFEI 177 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l--l~---~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l 177 (593)
....|..-+. ..+.+..++|+.-|.++.+.|.. .|-+| +. +..+ .|+...|...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g----~YpvLA~mr~at~~a~----------------kgdta~AV~a 116 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYG----SYPVLARMRAATLLAQ----------------KGDTAAAVAA 116 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCC----cchHHHHHHHHHHHhh----------------cccHHHHHHH
Confidence 3444555554 35667789999999999988753 33333 22 2222 3688999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHH---HHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 178 FQQMITDKVDPNEATFTSVAR---LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 178 ~~~M~~~g~~p~~~ty~~li~---~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
|++.-...-.|-..-=.+-++ .+...|-++.....++.+..-+-......-..|--+--+.|++.+|..+|..+...
T Consensus 117 Fdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 117 FDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 999887654554432222222 34577888888888887765544333444456667777899999999999988764
Q ss_pred CCCCC
Q 007684 255 GVVPE 259 (593)
Q Consensus 255 g~~p~ 259 (593)
.-.|.
T Consensus 197 a~apr 201 (221)
T COG4649 197 AQAPR 201 (221)
T ss_pred ccCcH
Confidence 44443
No 264
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=67.21 E-value=30 Score=28.07 Aligned_cols=30 Identities=13% Similarity=0.218 Sum_probs=11.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007684 186 VDPNEATFTSVARLAVAKEDPEMAFDLVKQ 215 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 215 (593)
+.|+.....+.+++|-+..|+..|.++|+-
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE~ 67 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILEA 67 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 333333333334444333344344443333
No 265
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.63 E-value=34 Score=32.86 Aligned_cols=91 Identities=13% Similarity=0.111 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKS----FGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESG---VVPEEPEL 263 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~ 263 (593)
-|..+-+.+++...+++|-..+.+-.. ..-.|+ -..|-..|-.|.-..++..|+..+++--..+ -.-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 345556667777777777666554421 111133 2446666777777889999999999854322 12355678
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 007684 264 SALLKLSVDAKKVDKVYEIL 283 (593)
Q Consensus 264 ~~Ll~~~~~~g~~~~a~~~l 283 (593)
..||.+| ..|+.+++..++
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 9999998 667777766543
No 266
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=66.03 E-value=8 Score=24.51 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=15.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAF 210 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~ 210 (593)
+-|..+|+.+...|...|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666666664
No 267
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=65.80 E-value=11 Score=24.45 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 226 RSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 226 ~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
.+++.+...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356667777777777777777776654
No 268
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.68 E-value=32 Score=28.21 Aligned_cols=60 Identities=13% Similarity=0.076 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 233 (593)
+..+-++.+-...+.|+.....+.+++|-+..++..|.++|+-++.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 33344444455566777777777777777777777777777766642 1122335655543
No 269
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=65.66 E-value=15 Score=22.75 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+|..+..+|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666554
No 270
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.45 E-value=17 Score=38.35 Aligned_cols=106 Identities=17% Similarity=0.088 Sum_probs=52.6
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 176 EIFQQMITDKVDPNEAT--FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK---LRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 176 ~l~~~M~~~g~~p~~~t--y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
++++.+.+.|..|+... -.+.+...+..|+.+.+..++ +.|..++ ..-.+++. ..+..|+.+- .+.
T Consensus 116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~ei----v~~ 186 (413)
T PHA02875 116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIAI----CKM 186 (413)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHH
Confidence 45555666676654421 123444556677776554444 3444333 23334444 4455666543 444
Q ss_pred HHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 007684 251 MGESGVVPEEPE---LSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 251 m~~~g~~p~~~t---~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~ 294 (593)
+.+.|..++... ..+++...+..|+.+- .+.+.+.|..++
T Consensus 187 Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n 229 (413)
T PHA02875 187 LLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCN 229 (413)
T ss_pred HHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcc
Confidence 455666665432 1244443445666543 344445555554
No 271
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.19 E-value=2.2e+02 Score=31.38 Aligned_cols=168 Identities=15% Similarity=0.124 Sum_probs=103.1
Q ss_pred HHcCCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccc-cHHHHHHHHHHHHhCC
Q 007684 114 CSKRGDVFEALRLYDDARS-------NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNL-GLKRGFEIFQQMITDK 185 (593)
Q Consensus 114 ~~~~g~~~~A~~l~~~m~~-------~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~l~~~M~~~g 185 (593)
++...|++.|+.+|+.+.+ .|.. ...+-+=.+|.++... .. +.+.|+.+|.+.-..|
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~------------~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGV------------EKIDYEKALKLYTKAAELG 323 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCC------------ccccHHHHHHHHHHHHhcC
Confidence 5577899999999999877 4522 2334444456554210 11 6788999999988888
Q ss_pred CCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCcccHHHHH-HHHH--hcCChhHHHHHHHHHHhCCCCCCHH
Q 007684 186 VDPNEATFTSVARLAVA-KEDPEMAFDLVKQMKSFGIPPKLRSYGPAL-FGFC--KLGNTDKAYEVDAHMGESGVVPEEP 261 (593)
Q Consensus 186 ~~p~~~ty~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~ty~~li-~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~ 261 (593)
.|+...+-..+..... -.+...|+++|....+.|- +. ..|...+ ...+ -..+.+.|..++.+.-+.| .|-..
T Consensus 324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~ 399 (552)
T KOG1550|consen 324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH-IL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAA 399 (552)
T ss_pred -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC-hH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhH
Confidence 5666655444443333 3567899999999988886 22 2333222 1111 2347888999999988888 33322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684 262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301 (593)
Q Consensus 262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l 301 (593)
---..+..+.. +..+.+.-.+..+.+.+..........+
T Consensus 400 ~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l 438 (552)
T KOG1550|consen 400 YLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYL 438 (552)
T ss_pred HHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHH
Confidence 22233333444 7777777777777776555444433333
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=64.93 E-value=1.6e+02 Score=29.73 Aligned_cols=64 Identities=13% Similarity=-0.048 Sum_probs=45.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVP---EEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+|..+...+.+.|.++.|...+.++...+... .....-.-.+.+-..|+.++|+..++...+
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678888888999999999999999887644211 222233344555677888899888887766
No 273
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.60 E-value=1.5e+02 Score=29.07 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCH-HHHH
Q 007684 191 ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL----RSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEE-PELS 264 (593)
Q Consensus 191 ~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~t~~ 264 (593)
..|+.-+.. .+.|++..|.+.|....+.. |+. ..+=-|..++...|+.+.|..+|..+.. .+-.|-. ..+-
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 367766654 45677888998888887632 331 2344477888889999999888888875 2222322 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHH
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSEST 297 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t 297 (593)
-|.....+.|+.++|-.+|+++.+ ..|+...
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k--~YP~t~a 250 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIK--RYPGTDA 250 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH--HCCCCHH
Confidence 666677788889999999888876 4455443
No 274
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=63.91 E-value=48 Score=30.90 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 007684 207 EMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE---SGVVPEEPELSALLKLSVDAKKVDKVY 280 (593)
Q Consensus 207 ~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~Ll~~~~~~g~~~~a~ 280 (593)
+.|.+.|-++...+..-+....- .+..|--..+.++|..++.+..+ .+-.+|...+.+|...+.+.|+.+.|+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 35666676776655533333333 33444445677777777776664 233566777777777777777777765
No 275
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=63.70 E-value=62 Score=30.21 Aligned_cols=74 Identities=18% Similarity=0.087 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCcccHHHHHHHHHhcCChhHHH
Q 007684 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS---FGIPPKLRSYGPALFGFCKLGNTDKAY 245 (593)
Q Consensus 171 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~ty~~li~~~~~~g~~~~A~ 245 (593)
=+.|.+.|-++...+.--+.....+|...|. ..+.+++.+++-+..+ .+-.+|...+..|.+.|-+.|+.+.|.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3689999999998886656666666665555 6788899999888864 232577888999999999999998886
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=63.46 E-value=5.5 Score=34.84 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=68.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g 274 (593)
.+|..+.+.+..+....+++.+...+..-+....+.++..|++.++.++.+++++.. +..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcc
Confidence 467777888999999999999997766566788999999999999989999998832 1133456788888999
Q ss_pred CHHHHHHHHHHHHH
Q 007684 275 KVDKVYEILHRLRT 288 (593)
Q Consensus 275 ~~~~a~~~l~~m~~ 288 (593)
.++.+..++.++..
T Consensus 85 l~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN 98 (143)
T ss_dssp SHHHHHHHHHCCTT
T ss_pred hHHHHHHHHHHccc
Confidence 99999998888755
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=63.32 E-value=1.1e+02 Score=26.99 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=10.8
Q ss_pred HHcCCCHHHHHHHHHHHHHC
Q 007684 114 CSKRGDVFEALRLYDDARSN 133 (593)
Q Consensus 114 ~~~~g~~~~A~~l~~~m~~~ 133 (593)
..+.|++++|.+.|+.+..+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r 39 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR 39 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 33445555665555555544
No 278
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.20 E-value=62 Score=31.79 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=63.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 007684 196 VARLAVAKEDPEMAFDLVKQMKS--FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVD- 272 (593)
Q Consensus 196 li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~- 272 (593)
=|.+++..++|.++....-+--+ ..++| ...-..|--|.|.|+...+.++-.......-.-+...|.++...|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 37889999999998766544422 23434 34566788899999999999999998865433445558887777665
Q ss_pred ----cCCHHHHHHHH
Q 007684 273 ----AKKVDKVYEIL 283 (593)
Q Consensus 273 ----~g~~~~a~~~l 283 (593)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 69999999876
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=63.19 E-value=55 Score=34.87 Aligned_cols=72 Identities=14% Similarity=0.215 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCC
Q 007684 168 NLGLKRGFEIFQQMITDKVD-PNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGN 240 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~ 240 (593)
.|+.++|+++|++|.+..-. -+.....+||.++...+.+.++..++.+--+... |+ ...|+..+-.+-..++
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKARAVGD 346 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHHHhhcc
Confidence 58999999999999765422 2455788999999999999999999999765444 55 3578887766555554
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=62.96 E-value=15 Score=24.67 Aligned_cols=28 Identities=21% Similarity=0.035 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSN 133 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 133 (593)
++..+-..|...|++++|.++|+++.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677888999999999999999999987
No 281
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=62.66 E-value=61 Score=26.36 Aligned_cols=44 Identities=16% Similarity=0.144 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 244 AYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 244 A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
+.+-++.+....+.|+.....+-+++|.+-+++.-|.++|+-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555555555444
No 282
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=61.34 E-value=1.2e+02 Score=27.12 Aligned_cols=198 Identities=16% Similarity=0.093 Sum_probs=117.1
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
......+...+.+..+...+...... .........+..+...+...++...+.+.+.........+.. ......
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 136 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALEL-----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLA 136 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhh-----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHH
Confidence 55555666666666666655333300 012233334666667777777788888888877765433311 111111
Q ss_pred H-HHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 007684 147 Y-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPP 223 (593)
Q Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 223 (593)
. .+... |+++.|...|.+...... ......+......+...++.+.|...+.+........
T Consensus 137 ~~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 200 (291)
T COG0457 137 LGALYEL----------------GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200 (291)
T ss_pred HHHHHHc----------------CCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc
Confidence 1 33333 588888888888754221 1233444444555667788888888888887643211
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 224 KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 224 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
....+..+-..+...++.+.|...+....... |+ ...+..+...+...+..+.+...+.+...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667777778888888888888888776432 33 33444444444466667777777777655
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.91 E-value=1.1e+02 Score=34.66 Aligned_cols=175 Identities=16% Similarity=0.060 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHH----HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHK----LDMCSKRGDVFEALRLYDDARSNGITLSQHHY 142 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 142 (593)
..-|..+.+...++-|..+. .....+......+ -+-+-+.|++++|..-|-+-... +.|+
T Consensus 338 e~kL~iL~kK~ly~~Ai~LA-----------k~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s---- 401 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLA-----------KSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS---- 401 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHH-----------HhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH----
Confidence 44555666666666666655 2223333333333 33355678898888877654322 1221
Q ss_pred HHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 007684 143 NVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIP 222 (593)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 222 (593)
.+|.-|..+ .+...--.+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+..- .|..
T Consensus 402 -~Vi~kfLda----------------q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~ 462 (933)
T KOG2114|consen 402 -EVIKKFLDA----------------QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW 462 (933)
T ss_pred -HHHHHhcCH----------------HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce
Confidence 234444443 367777788888888885 455566788999999999888777766544 2321
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 223 PKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 223 p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
..-....+..+-+.+-.++|+-+=.... -.+.....++. ..+++++|++++..|
T Consensus 463 --~fd~e~al~Ilr~snyl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 463 --FFDVETALEILRKSNYLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred --eeeHHHHHHHHHHhChHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 1123456666666666666665544432 12333333333 356677777666554
No 284
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.73 E-value=71 Score=32.22 Aligned_cols=154 Identities=6% Similarity=-0.063 Sum_probs=84.1
Q ss_pred hcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHc
Q 007684 74 SKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQ--HHYNVLLYVCSC 151 (593)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~ty~~ll~~~~~ 151 (593)
...|+..+|....++++ ...+.+-...+.-=++|.-.|+...-...++++.-. ..+|. ++|-.=|.++.-
T Consensus 114 ~~~g~~h~a~~~wdklL-------~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLL-------DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hccccccHHHHHHHHHH-------HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhH
Confidence 34556666666665555 444444445666677777777777777777765522 02222 222222222221
Q ss_pred cCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCcccH
Q 007684 152 KCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSF---GIPPKLRSY 228 (593)
Q Consensus 152 ~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty 228 (593)
. .+|-+++|.+.-++..+-+ +-|.-+-.++...+--.|+..++.+...+-... +-..-...|
T Consensus 186 ~--------------E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNy 250 (491)
T KOG2610|consen 186 E--------------ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNY 250 (491)
T ss_pred H--------------HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhh
Confidence 1 1456777777766666555 556666666666666677777777665543321 110111233
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 007684 229 GPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 229 ~~li~~~~~~g~~~~A~~l~~~ 250 (593)
=...-.+...+.++.|+++|++
T Consensus 251 WH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 251 WHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhhcccchhHHHHHHHH
Confidence 3334444556777777777764
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=60.69 E-value=3.1 Score=26.42 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=26.6
Q ss_pred cccCCCHHHHHHHHHHHHHHhhhhhhHHhH
Q 007684 366 VCIDIDPRETENFASSLSNLACQREVRSDF 395 (593)
Q Consensus 366 ~~~~l~~~~~~~~~~~i~~l~~~~~~~~a~ 395 (593)
+++++.|.+...|..+-..|...|+.++|.
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456788999999999999999999999885
No 286
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=60.10 E-value=9.2 Score=32.93 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=26.5
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684 234 GFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLS 270 (593)
Q Consensus 234 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~ 270 (593)
..-+.|.-..|..+|+.|++.|-.||. |+.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 344556677788999999999988876 77777654
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.97 E-value=22 Score=21.50 Aligned_cols=28 Identities=11% Similarity=-0.025 Sum_probs=23.0
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHHHHhcC
Q 007684 379 ASSLSNLACQREVRSDFNKFQEWLGRHG 406 (593)
Q Consensus 379 ~~~i~~l~~~~~~~~a~~~f~~~l~~~~ 406 (593)
-.+...+...|+.++|.+.|++.++..+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3455667789999999999999998765
No 288
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.97 E-value=2.7e+02 Score=30.62 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=13.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~ 214 (593)
++.-|..|-++....+++..|.+.|.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~ 690 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFL 690 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHH
Confidence 34445555555555555555555554
No 289
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=59.85 E-value=1.5e+02 Score=27.52 Aligned_cols=117 Identities=8% Similarity=-0.101 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCCHH
Q 007684 185 KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESG---VVPEEP 261 (593)
Q Consensus 185 g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~ 261 (593)
.+.|+..---.|..++...|+..+|...|++-...-..-|....-.+..+....+++.+|...++.+-+.. -.||.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 34688888888999999999999999999998864444455555556677778899999999999887643 34554
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 262 ELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 262 t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
.-.+-++|...|+..+|...|+.... ..|++..--..-.++
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~L 203 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEML 203 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHH
Confidence 44567788889999999999999877 455554333333333
No 290
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.11 E-value=1.8e+02 Score=28.40 Aligned_cols=88 Identities=17% Similarity=0.116 Sum_probs=64.5
Q ss_pred cccccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCc-ccHHHHHHHHHhcCCh
Q 007684 166 DSNLGLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS-FGIPPKL-RSYGPALFGFCKLGNT 241 (593)
Q Consensus 166 ~~~g~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~-~ty~~li~~~~~~g~~ 241 (593)
.+.|++..|..-|....+... .-...++=-|..++...|+++.|..+|..+.+ .+-.|.. .++--+.....+.|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 456888899999988887641 12223455678888999999999999988865 3333443 4555567777888999
Q ss_pred hHHHHHHHHHHh
Q 007684 242 DKAYEVDAHMGE 253 (593)
Q Consensus 242 ~~A~~l~~~m~~ 253 (593)
++|..+|++..+
T Consensus 232 d~A~atl~qv~k 243 (262)
T COG1729 232 DEACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHHH
Confidence 999999998875
No 291
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=56.92 E-value=59 Score=25.84 Aligned_cols=14 Identities=29% Similarity=0.266 Sum_probs=6.5
Q ss_pred CChhHHHHHHHHHH
Q 007684 239 GNTDKAYEVDAHMG 252 (593)
Q Consensus 239 g~~~~A~~l~~~m~ 252 (593)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 292
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=56.69 E-value=1.1e+02 Score=32.63 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=96.5
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
+.++..+-+.|..+.|+.+. . ++ ..--+...+.|+++.|.++-++. .+...|..|-
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~--------------~-D~---~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg 354 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFV--------------T-DP---DHRFELALQLGNLDIALEIAKEL------DDPEKWKQLG 354 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHS--------------S--H---HHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHhhc--------------C-Ch---HHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHH
Confidence 88899999999999998876 1 22 23345667899999999876543 3678899988
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR 226 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 226 (593)
..+... |+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 355 ~~AL~~----------------g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------ 403 (443)
T PF04053_consen 355 DEALRQ----------------GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------ 403 (443)
T ss_dssp HHHHHT----------------TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred HHHHHc----------------CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------
Confidence 876665 699999999987762 6678888899999988888887777654
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
-+|....++...|+.++..+++.+-
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3777888888889998888877653
No 293
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=56.39 E-value=2.5e+02 Score=29.15 Aligned_cols=176 Identities=17% Similarity=0.146 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNG-ITLSQH--HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~--ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
...+.+...|..|+++.|+++++.-++.. +.++.. .--.||.+-... .++ -+...|.+.-.+-
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s--------~ld-----adp~~Ar~~A~~a- 255 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS--------LLD-----ADPASARDDALEA- 255 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH--------Hhc-----CChHHHHHHHHHH-
Confidence 35566666666666666666666655442 333432 122333321111 000 1223333322222
Q ss_pred hCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCH
Q 007684 183 TDKVDPNEAT-FTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE-SGVVPEE 260 (593)
Q Consensus 183 ~~g~~p~~~t-y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~ 260 (593)
..+.||.+- --.-.+++.+.|+..++-.+++.+-+..-.|+. ..+..+.+.|+. +..=++.... ..++||.
T Consensus 256 -~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdt--a~dRlkRa~~L~slk~nn 328 (531)
T COG3898 256 -NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDT--ALDRLKRAKKLESLKPNN 328 (531)
T ss_pred -hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCc--HHHHHHHHHHHHhcCccc
Confidence 223444432 223345667777777777777777665444442 122223344433 3322222221 2344544
Q ss_pred HH-HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 007684 261 PE-LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDW 304 (593)
Q Consensus 261 ~t-~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~ 304 (593)
.. .-++..+-...|++..|..--+... ...|.++.|-.|...
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdI 371 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADI 371 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHH
Confidence 33 4445555566666655543322221 234666666555543
No 294
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=56.30 E-value=18 Score=21.12 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHH
Q 007684 193 FTSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~ 214 (593)
...+..++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445556666666666666554
No 295
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.67 E-value=41 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=14.1
Q ss_pred hcCCHHHHHHHHHHHHHccCCCCHHHHHHHH
Q 007684 272 DAKKVDKVYEILHRLRTLVRQVSESTFKIIE 302 (593)
Q Consensus 272 ~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~ 302 (593)
+.|..+++..++++|.+.|+..++..+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3344444444444444444444444444333
No 296
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=55.53 E-value=2.8e+02 Score=29.42 Aligned_cols=143 Identities=9% Similarity=-0.016 Sum_probs=89.0
Q ss_pred HhcCCCcccCCCCcccccchHHhhhhcCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---H
Q 007684 73 FSKKSTVNESSAPNTGTMSNKSKKKARRESPEGV-LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY---V 148 (593)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~---~ 148 (593)
+-+.++.++|+.+|..+...... ....-.+.+ -+.+|++|-.+ +++.......+.++. .| ...|-.|.. .
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~--~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKES--SPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhc--chHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 45778889999999777621111 111122233 67788888664 355555556555544 22 234444544 3
Q ss_pred HHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 007684 149 CSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITD--KVDP------------NEATFTSVARLAVAKEDPEMAFDLVK 214 (593)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~--g~~p------------~~~ty~~li~~~~~~g~~~~A~~l~~ 214 (593)
|.+ +...+|.+.+..-.+. +-.| |-.-=+..+..+...|++.++..+++
T Consensus 90 Y~~-----------------k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 90 YKQ-----------------KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred HHh-----------------hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 443 4888888888776654 3222 22223556777889999999999999
Q ss_pred HHHhCCCC----CCcccHHHHHHHHHhc
Q 007684 215 QMKSFGIP----PKLRSYGPALFGFCKL 238 (593)
Q Consensus 215 ~m~~~g~~----p~~~ty~~li~~~~~~ 238 (593)
+|...-++ -+..+||-++-.+++.
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 99764332 5778899877777764
No 297
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.66 E-value=41 Score=23.30 Aligned_cols=39 Identities=10% Similarity=0.086 Sum_probs=32.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007684 231 ALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKL 269 (593)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~ 269 (593)
++...-+.|-++++..++++|.+.|+..+...|..++.-
T Consensus 8 iL~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 8 ILLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 344455789999999999999999999999998887763
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.56 E-value=2.3e+02 Score=28.18 Aligned_cols=151 Identities=13% Similarity=0.040 Sum_probs=94.3
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHH
Q 007684 113 MCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEAT 192 (593)
Q Consensus 113 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~t 192 (593)
.....|++.+|..+|+......-. +...--.|..+|... |+.+.|..++..+-..--......
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~----------------g~~e~A~~iL~~lP~~~~~~~~~~ 205 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAA----------------GDVEAAQAILAALPLQAQDKAAHG 205 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHc----------------CChHHHHHHHHhCcccchhhHHHH
Confidence 466779999999999998866222 122222334456665 699999999998865432333333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 007684 193 FTSVARLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGES--GVVPEEPELSALLKL 269 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Ll~~ 269 (593)
..+-|..+.+.....+...+-.+.-.. | |...--.+-..|...|+.+.|.+.+-.+... |.. |...-..|+..
T Consensus 206 l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~ 281 (304)
T COG3118 206 LQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLEL 281 (304)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHH
Confidence 444556666666666666666666542 5 3444445777888899999998877766643 332 44445667776
Q ss_pred HHhcCCHHHHHHHHH
Q 007684 270 SVDAKKVDKVYEILH 284 (593)
Q Consensus 270 ~~~~g~~~~a~~~l~ 284 (593)
+.--|..|.+...++
T Consensus 282 f~~~g~~Dp~~~~~R 296 (304)
T COG3118 282 FEAFGPADPLVLAYR 296 (304)
T ss_pred HHhcCCCCHHHHHHH
Confidence 666665444443333
No 299
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=54.53 E-value=1.2e+02 Score=31.60 Aligned_cols=64 Identities=20% Similarity=0.092 Sum_probs=47.7
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 225 LRSYGPALFGFCKLGNTDKAYEVDAHMG----ESGVV-PEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 225 ~~ty~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
-+.|+.|-+.|--.|+++.|....+.-. +-|-+ .....+..|-+++.-.|+++.|.+.|+.-..
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 4788889999999999999988766533 22322 2234578888888889999999988887544
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.50 E-value=99 Score=33.75 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=23.6
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 007684 201 VAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHM 251 (593)
Q Consensus 201 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m 251 (593)
.+.|+++.|.++..+.. +..-|..|-.+....|++..|.+-|.+.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 45566666666554432 1234555555555555555555555443
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.30 E-value=33 Score=20.94 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 193 FTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+..+...+...|++++|.+.+++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44455556666666666666665544
No 302
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.01 E-value=33 Score=34.04 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=32.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHY 142 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 142 (593)
.||..|....+.||+++|+.|++|.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3999999999999999999999999999987444444
No 303
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=51.90 E-value=2e+02 Score=26.73 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=71.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 109 HKLDMCSKRGDVFEALRLYDDARSNGIT-L-SQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 109 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
.....+.+.|++.+|...|+.+...--. | -....-.+..++-+. |+.+.|...|++..+...
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~----------------~~y~~A~~~~~~fi~~yP 73 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ----------------GDYEEAIAAYERFIKLYP 73 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT----------------T-HHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHHCC
Confidence 3444556778888888888888765211 1 112222223344444 588888888888776432
Q ss_pred CCCHHHHHHHHHHHHhcCC-------------hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 187 DPNEATFTSVARLAVAKED-------------PEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~-------------~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
.-...-+...+.+.+.... ..+|.. .+..+|.-|=......+|...+.++.+
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~---------------~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIE---------------EFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHH---------------HHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHH---------------HHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 2222333333333332111 122233 333444444445555555544444432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 007684 254 SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTL 289 (593)
Q Consensus 254 ~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~ 289 (593)
. .-...+ .+.+.|.+.|.+..|..-++.+.+.
T Consensus 139 ~---la~~e~-~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 139 R---LAEHEL-YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp H---HHHHHH-HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred H---HHHHHH-HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 011112 2456677888888888777777663
No 304
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.73 E-value=3.7e+02 Score=29.66 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh-------CCCCCCHHH
Q 007684 120 VFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT-------DKVDPNEAT 192 (593)
Q Consensus 120 ~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~-------~g~~p~~~t 192 (593)
...|..+++...+.|.. ..-..+...|..+ .+....+++.|+..|+.+.. .| +...
T Consensus 228 ~~~a~~~~~~~a~~g~~---~a~~~~g~~y~~G-----------~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a 290 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS---EAQYALGICYLAG-----------TYGVTQDLESAIEYLKLAAESFKKAATKG---LPPA 290 (552)
T ss_pred hhHHHHHHHHHHhhcch---HHHHHHHHHHhhc-----------cccccccHHHHHHHHHHHHHHHHHHHhhc---CCcc
Confidence 56788999988887642 2222222222221 01223589999999999876 55 3345
Q ss_pred HHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 193 FTSVARLAVAKE-----DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK-LGNTDKAYEVDAHMGESGVVPEEPELSAL 266 (593)
Q Consensus 193 y~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 266 (593)
..-+..+|.+-. +.+.|+.++.+....|. |+...+-..+.-... ..+...|.++|...-..|..+ ..|. +
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~--A~~~-l 366 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL--AIYR-L 366 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH--HHHH-H
Confidence 667777777643 67789999999988877 655433322222222 346789999999988888532 2222 1
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHcc
Q 007684 267 LKLSV----DAKKVDKVYEILHRLRTLV 290 (593)
Q Consensus 267 l~~~~----~~g~~~~a~~~l~~m~~~~ 290 (593)
-..|. -..+.+.|..++++..+.+
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 11221 2237788888888888876
No 305
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=51.30 E-value=32 Score=26.75 Aligned_cols=45 Identities=9% Similarity=0.094 Sum_probs=20.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHH
Q 007684 202 AKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGNTDKAYE 246 (593)
Q Consensus 202 ~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~~~~A~~ 246 (593)
...+-++|+..|+...+.-..|. -++.+.++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555443222111 2345555555555555554443
No 306
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=50.82 E-value=1.8e+02 Score=25.90 Aligned_cols=166 Identities=17% Similarity=0.076 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHH
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSN-GITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMI 182 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~ 182 (593)
...+......+...+++..+...+...... ........+..+...+... +....+.+.+....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~ 122 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL----------------GKYEEALELLEKAL 122 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH----------------hhHHHHHHHHHHHH
Confidence 455778888888899999999888887652 1122333333333334333 46788999998888
Q ss_pred hCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCC----CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 007684 183 TDKVDPNEATFTSVAR-LAVAKEDPEMAFDLVKQMKSFGIPP----KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVV 257 (593)
Q Consensus 183 ~~g~~p~~~ty~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p----~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 257 (593)
.....+ ......... .+...|+.+.|...+++... ..| ....+......+...++.+.|...+.........
T Consensus 123 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 123 ALDPDP-DLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred cCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 755333 222233333 78899999999999999855 333 2233444444466788999999999988754322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 258 PEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 258 p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.....+..+-..+...+..+.+...+.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred cchHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 1356677888888888888899888888766
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=50.65 E-value=43 Score=20.56 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDARSN 133 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 133 (593)
..|..+...|...|++++|+..|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35788889999999999999999998865
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=49.81 E-value=45 Score=20.28 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 007684 106 VLRHKLDMCSKRGDVFEALRLYDDARSN 133 (593)
Q Consensus 106 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 133 (593)
.+..+-..+.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4667788899999999999999998765
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.51 E-value=37 Score=23.11 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=10.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHH
Q 007684 231 ALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 231 li~~~~~~g~~~~A~~l~~~m~ 252 (593)
+-.+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3344444444444444444444
No 310
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.24 E-value=36 Score=23.17 Aligned_cols=37 Identities=8% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHH
Q 007684 265 ALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKII 301 (593)
Q Consensus 265 ~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l 301 (593)
.|-.+|...|+.+.|.++++++.+.+-.+...-...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~L 40 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARAL 40 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3678999999999999999999876554444333333
No 311
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=49.18 E-value=5.4e+02 Score=30.84 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 007684 187 DPNEATFTSVARLAV----AKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPE 262 (593)
Q Consensus 187 ~p~~~ty~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 262 (593)
.|+...+..+..+|+ ....+++|.-.|+...+. .-.+.+|-.+|++.+|+.+-.+|.. .-|...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHH
Confidence 567766666655554 467777777777655331 1267777788888888888777742 112211
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 007684 263 --LSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD 306 (593)
Q Consensus 263 --~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~ 306 (593)
-..|..-+...++.-+|.+++..-.. -....+..+.+++.
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s----d~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS----DPEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhc----CHHHHHHHHhhHhH
Confidence 24567777778887777776665543 22334455555553
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.11 E-value=1.9e+02 Score=25.64 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=43.9
Q ss_pred HHHHHHHHH---HHhcCChHHHHHHHHHHHhCCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 007684 191 ATFTSVARL---AVAKEDPEMAFDLVKQMKSFGIPPKL---RSYGPALFGFCKLGNTDKAYEVDAHMGESG 255 (593)
Q Consensus 191 ~ty~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~---~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 255 (593)
...+.||.. -...++.+++..+++.|.- +.|+. .++... -+...|++++|..+|++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 334444443 3358999999999999976 45664 344433 3568999999999999998765
No 313
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=48.81 E-value=2.8e+02 Score=27.38 Aligned_cols=188 Identities=12% Similarity=0.065 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHccCCCCCCCCCCCcccccccHHH
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSN--------GITLSQ-----HHYNVLLYVCSCKCGSESSENGDRENDSNLGLKR 173 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~-----~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 173 (593)
||.-.+.+.+..+++.|...+++..+. ...|+. .+...|..+|...+ .....++
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~-------------~~~~~~k 105 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWD-------------TYESVEK 105 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCC-------------ChHHHHH
Confidence 666666666665888887777664332 223333 34444455555542 1135677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH---HhcCChhHHHHHHHH
Q 007684 174 GFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGF---CKLGNTDKAYEVDAH 250 (593)
Q Consensus 174 a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~---~~~g~~~~A~~l~~~ 250 (593)
|..+++.+...... ....|-.-++.+.+.++.+.+.+++.+|...-. -....+..++..+ .... ...|...+..
T Consensus 106 a~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~ 182 (278)
T PF08631_consen 106 ALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEKS-PELAAFCLDY 182 (278)
T ss_pred HHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhhC-cHHHHHHHHH
Confidence 88888888655422 244555667777779999999999999987522 1334555555555 4433 3456666666
Q ss_pred HHhCCCCCCHH-HHHHH--HHHHH--hc------CCHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHhcchh
Q 007684 251 MGESGVVPEEP-ELSAL--LKLSV--DA------KKVDKVYEILHRLRT-LVRQVSESTFKIIEDWFDSVDA 310 (593)
Q Consensus 251 m~~~g~~p~~~-t~~~L--l~~~~--~~------g~~~~a~~~l~~m~~-~~~~~~~~t~~~l~~~~~~~~~ 310 (593)
+....+.|... -...+ -..+. .. .+.+.+.+++....+ .+.+.+..+...+...+-+.+.
T Consensus 183 ~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~ 254 (278)
T PF08631_consen 183 LLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGK 254 (278)
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 66555555543 11111 11111 11 125556666665443 4556677777666666544443
No 314
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.49 E-value=2e+02 Score=29.24 Aligned_cols=115 Identities=10% Similarity=-0.016 Sum_probs=77.7
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccH----HHHHHHHHhcCChhHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSY----GPALFGFCKLGNTDKA 244 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty----~~li~~~~~~g~~~~A 244 (593)
|++.+|-..++++.+.- +-|..+.+..=++|.-.|+.+.-...++++... -.|+...| +..-.++...|-+++|
T Consensus 117 g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 57888888888888765 778888888888999999999888888888653 12444333 3333444578888898
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 245 ~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
++.-++..+.+- .|.-.-.++-..+.-.|+..++.++..+-
T Consensus 195 Ek~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 888777654331 22233344555555667777777665543
No 315
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=48.35 E-value=44 Score=20.43 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
+|..+...|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666677777777777777776654
No 316
>TIGR00305 probable toxin-antitoxin system toxin component, PIN family. This uncharacterized protein family, part of the PIN domain superfamily, is restricted to bacteria and archaea. A comprehensive in silico study of toxin-antitoxin systems by Makarova, et al. (2009) finds evidence this family represents the toxin-like component of one class of type 2 toxin-antitoxin systems.
Probab=47.82 E-value=15 Score=30.80 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHhCCc-EEEecc
Q 007684 486 SNDDWYWLYATVNCKS-LLVTND 507 (593)
Q Consensus 486 s~DD~~~lyaa~~~~~-~~vs~D 507 (593)
-.||..++-+|+..++ .|||+|
T Consensus 86 D~~D~~~l~~A~~~~ad~iVT~D 108 (114)
T TIGR00305 86 DKKDNKFLNTAYASKANALITGD 108 (114)
T ss_pred CchhHHHHHHHHhcCCCEEEECC
Confidence 4578899999999988 999999
No 317
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=46.64 E-value=4.4e+02 Score=29.61 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYD 128 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~ 128 (593)
...-.+-+++.+.|.-++|.+.|-
T Consensus 853 ~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 853 ELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred chHHHHHHHHHhhchHHHHHHHHH
Confidence 346667777777777777776663
No 318
>COG2351 Transthyretin-like protein [General function prediction only]
Probab=46.42 E-value=12 Score=31.15 Aligned_cols=28 Identities=29% Similarity=0.581 Sum_probs=21.0
Q ss_pred CceeeeCCCCCccceec----cCCCceEeccc
Q 007684 538 DGLNLLMPPPYSIVIQE----SENGSWHVPVI 565 (593)
Q Consensus 538 ~~~~~~~p~~~~~~~q~----~~~~~wh~p~~ 565 (593)
.|+....|+.++.+.-+ ..+++||||.-
T Consensus 81 ~g~~~~~~~Fl~~V~vrF~iad~~~HYHVPLL 112 (124)
T COG2351 81 RGVQLADPPFLDVVPVRFGIADVDEHYHVPLL 112 (124)
T ss_pred cCcccCCCCccceEEEEEEEcCCCCceeeeeE
Confidence 46778888888877665 25679999975
No 319
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.98 E-value=3e+02 Score=26.33 Aligned_cols=112 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 007684 141 HYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFG 220 (593)
Q Consensus 141 ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g 220 (593)
.|...+.++..-. .+++++|.+.+ -.-.+.|+-..- ++.++...|+.+.|..++..+.
T Consensus 78 ~~~~~~~g~W~LD--------------~~~~~~A~~~L---~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~--- 135 (226)
T PF13934_consen 78 KYIKFIQGFWLLD--------------HGDFEEALELL---SHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVG--- 135 (226)
T ss_pred HHHHHHHHHHHhC--------------hHhHHHHHHHh---CCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcC---
Q ss_pred CCCCcccH--HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHH----hcCCHHHHHHH
Q 007684 221 IPPKLRSY--GPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP---ELSALLKLSV----DAKKVDKVYEI 282 (593)
Q Consensus 221 ~~p~~~ty--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~Ll~~~~----~~g~~~~a~~~ 282 (593)
|...+. ..+......++.+.+|+.+-+.. ++.. .+..++..+. +.+..++...+
T Consensus 136 --p~l~s~~~~~~~~~~La~~~v~EAf~~~R~~------~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 136 --PPLSSPEALTLYFVALANGLVTEAFSFQRSY------PDELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred --CCCCCHHHHHHHHHHHHcCCHHHHHHHHHhC------chhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 320
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.94 E-value=1.3e+02 Score=25.04 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 263 LSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 263 ~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78888888888888888888888876
No 321
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=43.76 E-value=33 Score=32.02 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=72.4
Q ss_pred cCCCHHHHHHHHHHHHHHhhhhhhH-------HhHHHHHHHHHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhh
Q 007684 368 IDIDPRETENFASSLSNLACQREVR-------SDFNKFQEWLGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQM 440 (593)
Q Consensus 368 ~~l~~~~~~~~~~~i~~l~~~~~~~-------~a~~~f~~~l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~ 440 (593)
|+++++|..+-......|+..+++. .+.+.|+..- ...|++|+=|+ ...+|++++++.+.+.|.++
T Consensus 65 f~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gid--Ts~pn~VVigl-----ape~F~y~~ln~AFrvL~e~ 137 (262)
T KOG3040|consen 65 FDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGID--TSDPNCVVIGL-----APEGFSYQRLNRAFRVLLEM 137 (262)
T ss_pred CCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCcc--CCCCCeEEEec-----CcccccHHHHHHHHHHHHcC
Confidence 3445555544445555566666553 5666665432 22666666554 24588999999999999982
Q ss_pred CCCCCceEEEecCCCcCC---CCCCCcchHHHHHHHHhCCcEEeCCCCCCChHHHHHHHHhC------CcEEEecchhhc
Q 007684 441 SPSKRMPLVILHKGRVSG---GPAQIPKNKKLLDIWRDGGALYTTPPGSNDDWYWLYATVNC------KSLLVTNDEMRD 511 (593)
Q Consensus 441 ~~~~~~~lv~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~DD~~~lyaa~~~------~~~~vs~D~~rd 511 (593)
++.+||-+|+-++-+ |..-.|. ..+..+.-..-+=++--|- -.+|+.-.|+.. .|+.|-.|.+-|
T Consensus 138 ---~k~~LIai~kgryykr~~Gl~lgpG--~fv~aLeyatg~~a~vvGK-P~~~fFe~al~~~gv~p~~aVMIGDD~~dD 211 (262)
T KOG3040|consen 138 ---KKPLLIAIGKGRYYKRVDGLCLGPG--PFVAALEYATGCEATVVGK-PSPFFFESALQALGVDPEEAVMIGDDLNDD 211 (262)
T ss_pred ---CCCeEEEecCceeeeeccccccCch--HHHHHhhhccCceEEEecC-CCHHHHHHHHHhcCCChHHheEEccccccc
Confidence 456777788765522 2211111 2333333222222222222 234666666653 466676666655
Q ss_pred c
Q 007684 512 H 512 (593)
Q Consensus 512 h 512 (593)
-
T Consensus 212 v 212 (262)
T KOG3040|consen 212 V 212 (262)
T ss_pred h
Confidence 4
No 322
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.34 E-value=3.1e+02 Score=30.94 Aligned_cols=112 Identities=9% Similarity=0.070 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHh
Q 007684 104 EGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMIT 183 (593)
Q Consensus 104 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~ 183 (593)
+-+.+--+.-+..-|+-.+|.++-.+.+ .||..-|-.=+.+.+.. +++++-+++=..++
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~----------------~kweeLekfAkskk- 742 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADI----------------KKWEELEKFAKSKK- 742 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhh----------------hhHHHHHHHHhccC-
Confidence 3346777777888888899888876655 56777777667777765 36666555444433
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 184 DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 184 ~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
+ ..-|--.+.+|.+.|+.++|.+++-+.. -+.-...+|.+.|++.+|.++--+
T Consensus 743 ---s--PIGy~PFVe~c~~~~n~~EA~KYiprv~---------~l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 743 ---S--PIGYLPFVEACLKQGNKDEAKKYIPRVG---------GLQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ---C--CCCchhHHHHHHhcccHHHHhhhhhccC---------ChHHHHHHHHHhccHHHHHHHHHH
Confidence 2 4668889999999999999999886442 222678899999999888776443
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=43.17 E-value=1.7e+02 Score=27.89 Aligned_cols=17 Identities=24% Similarity=0.118 Sum_probs=6.6
Q ss_pred HHHHHHHHhcCChHHHH
Q 007684 194 TSVARLAVAKEDPEMAF 210 (593)
Q Consensus 194 ~~li~~~~~~g~~~~A~ 210 (593)
..++..+|-.|+|++|.
T Consensus 39 hflfqLlcvaGdw~kAl 55 (273)
T COG4455 39 HFLFQLLCVAGDWEKAL 55 (273)
T ss_pred hHHHHHHhhcchHHHHH
Confidence 33333333333333333
No 324
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.12 E-value=42 Score=33.31 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 007684 228 YGPALFGFCKLGNTDKAYEVDAHMGESGV 256 (593)
Q Consensus 228 y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 256 (593)
|+..|....+.||+++|+.+.+|.++.|+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445555555555555555555544444
No 325
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=42.54 E-value=23 Score=30.58 Aligned_cols=31 Identities=13% Similarity=0.365 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLA 200 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~ 200 (593)
-|.-.+|..+|..|++.|-+||. ++.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 47778999999999999999976 67777654
No 326
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=41.80 E-value=2e+02 Score=23.70 Aligned_cols=79 Identities=15% Similarity=0.071 Sum_probs=41.5
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
..++|.-|-+-+...+- ..+..--+-+..+...|++++|..+.+.+ ..||+..|-++- -.+.|..+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHH
Confidence 45666666666655441 13333333334455667777776666554 236665554332 225555555555555
Q ss_pred HHHhCC
Q 007684 250 HMGESG 255 (593)
Q Consensus 250 ~m~~~g 255 (593)
.|..+|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 555544
No 327
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.73 E-value=86 Score=28.98 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=30.1
Q ss_pred hcCChHHHHHHHHHHHh-CCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 202 AKEDPEMAFDLVKQMKS-FGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 202 ~~g~~~~A~~l~~~m~~-~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
...+.+......+.+.+ ....|+..+|..++.++...|+.++|..+.+++.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444332 2344677777777777777777777776666665
No 328
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=41.52 E-value=2.5e+02 Score=24.72 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCC
Q 007684 169 LGLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPK--LRSYGPALFGFCKLGN 240 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~~~g~ 240 (593)
|++++|.+.|+.+...-. +-...+--.|+.+|.+.+++++|...+++..+.. |+ ..-|...+.|++.-..
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHHH
Confidence 588888888888887531 2344566677888888888888888888887732 44 2456666666665443
No 329
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=41.40 E-value=3.2e+02 Score=26.03 Aligned_cols=189 Identities=13% Similarity=0.111 Sum_probs=109.3
Q ss_pred CCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCC
Q 007684 77 STVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSE 156 (593)
Q Consensus 77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~ 156 (593)
|-...|.--|.+.+ .-.+.-+.+||.|---+...|+++.|.+.|+...+..-.-+-...|-=|..|-.
T Consensus 79 GL~~LAR~DftQaL-------ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~----- 146 (297)
T COG4785 79 GLRALARNDFSQAL-------AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG----- 146 (297)
T ss_pred hHHHHHhhhhhhhh-------hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec-----
Confidence 33344444454444 333555778999999999999999999999998887544344444444555555
Q ss_pred CCCCCCCcccccccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHhCCCCCCcccHHHHHHH
Q 007684 157 SSENGDRENDSNLGLKRGFEIFQQMITDK-VDPNEATFTSVARLAVAKEDPEMAFD-LVKQMKSFGIPPKLRSYGPALFG 234 (593)
Q Consensus 157 ~~~~~~~~~~~~g~~~~a~~l~~~M~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~ty~~li~~ 234 (593)
|+..-|.+=|-+.-+.. -.|-..-|--++. ..-++.+|.. +.++..+ .|..-|+.-|-.
T Consensus 147 ------------gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~ 207 (297)
T COG4785 147 ------------GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVE 207 (297)
T ss_pred ------------CchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHH
Confidence 47888888777776654 1232233332222 2334455543 3333332 343445544444
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 235 FCKLGNTDKAYEVDAHMGESGVVP-------EEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 235 ~~~~g~~~~A~~l~~~m~~~g~~p-------~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
|.- |++. .+.+++.... +-+- =..||--|.+-+...|+.++|..+|+-... ...|+.+..-|
T Consensus 208 ~yL-gkiS-~e~l~~~~~a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia------nnVynfVE~Ry 276 (297)
T COG4785 208 FYL-GKIS-EETLMERLKA-DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA------NNVYNFVEHRY 276 (297)
T ss_pred HHH-hhcc-HHHHHHHHHh-hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH------HhHHHHHHHHH
Confidence 422 1111 1122333321 1111 135677788888999999999999998766 45566666555
No 330
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.39 E-value=2.8e+02 Score=29.21 Aligned_cols=104 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhC---CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHH------------------HhCCCCCCcccHH
Q 007684 172 KRGFEIFQQMITD---KV-DPNEATFTSVARLAVAKEDPEMAFDLVKQM------------------KSFGIPPKLRSYG 229 (593)
Q Consensus 172 ~~a~~l~~~M~~~---g~-~p~~~ty~~li~~~~~~g~~~~A~~l~~~m------------------~~~g~~p~~~ty~ 229 (593)
++...+++..... |+ ..+......++..+ .|+...+..+++.. .......+...+-
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~~ 231 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEHY 231 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHHH
Q ss_pred HHHHHHHhc---CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007684 230 PALFGFCKL---GNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277 (593)
Q Consensus 230 ~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 277 (593)
.+++++.+. ++.+.|..++..|.+.|..|....-..++.++...|..+
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~ 282 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLAD 282 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccC
No 331
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=41.25 E-value=4.9e+02 Score=28.14 Aligned_cols=164 Identities=11% Similarity=0.036 Sum_probs=107.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 101 ESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 101 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
..++...-++|..++.+....-...+..+|..-|- +...|-.++..|... .-+.-..++++
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-----------------~n~~l~~lWer 123 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-----------------GNEQLYSLWER 123 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-----------------CchhhHHHHHH
Confidence 44566688899999999999999999999988754 778888889988886 34566777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc------ccHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 007684 181 MITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL------RSYGPALFGFCKLGNTDKAYEVDAHMGE- 253 (593)
Q Consensus 181 M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~ty~~li~~~~~~g~~~~A~~l~~~m~~- 253 (593)
+.+.. -|.+...--+.-+...++.+.+..+|.+....-+ |.. ..|.-++.-- ..+.|....+..++..
T Consensus 124 ~ve~d--fnDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI-~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~ 198 (711)
T COG1747 124 LVEYD--FNDVVIGRELADKYEKIKKSKAAEFFGKALYRFI-PRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTK 198 (711)
T ss_pred HHHhc--chhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHh
Confidence 76654 3444455544445555777777777777765433 321 1222222110 2355555566555553
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 254 SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 254 ~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.|...-.+.+.-+..-|....++++|.+++..+.+
T Consensus 199 lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 199 LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 45555556667777777777788888888776655
No 332
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.98 E-value=39 Score=29.42 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcc-hHHHHHHHHhCCcEEeCCCCCCChH
Q 007684 428 YQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPK-NKKLLDIWRDGGALYTTPPGSNDDW 490 (593)
Q Consensus 428 ~~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~DD~ 490 (593)
..+++|++.+++ ..|.+||++....+.........+ .+++.+.=+-+-.+|.|-.|.-|+.
T Consensus 89 ~~le~ViEdIEk--~eG~rPLi~~TsAr~~~N~isy~~lr~~I~e~dkp~LilfGTGwGlpde~ 150 (190)
T COG4752 89 YTLEEVIEDIEK--EEGRRPLIVGTSARTYPNTISYSWLRNEIQERDKPWLILFGTGWGLPDEL 150 (190)
T ss_pred HHHHHHHHHHHh--hcCCCceEEeccccccCCcccHHHHHHHHhhcCCcEEEEecCCCCCCHHH
Confidence 368999999998 358999999977665443333333 2344455555668899999988874
No 333
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=40.71 E-value=10 Score=27.92 Aligned_cols=37 Identities=24% Similarity=0.614 Sum_probs=23.7
Q ss_pred HHHHHHhCCcEEEecchhhccccccccccchhhhhcccEeE
Q 007684 492 WLYATVNCKSLLVTNDEMRDHLFQLLGTSFFPRWKEKHQIR 532 (593)
Q Consensus 492 ~lyaa~~~~~~~vs~D~~rdh~~~~~~~~~f~~w~~~hq~~ 532 (593)
|.-+|-.-+.+=+|.|+-|.|.+-+ .+.-||.+||.-
T Consensus 20 Wy~~aA~~~g~~~~~d~ARE~vYGM----Py~eWK~~~Q~~ 56 (68)
T PF06844_consen 20 WYREAAEERGIEMDKDEAREIVYGM----PYDEWKAKHQTE 56 (68)
T ss_dssp HHHHHHHHCT----HHHHHHHHHSS-----HHHHCHCH---
T ss_pred HHHHHHHhcCCcCCHHHHHHHHhCC----CHHHHHHHHCCC
Confidence 4455666678899999999999865 689999999964
No 334
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.52 E-value=6.3e+02 Score=29.11 Aligned_cols=165 Identities=13% Similarity=0.127 Sum_probs=106.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCC
Q 007684 107 LRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKV 186 (593)
Q Consensus 107 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~ 186 (593)
...-|+...+...++-|+.+-+. .+. +..+-..+..-|+.- .-+.|++++|..-|-+-... +
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~------------Ly~Kgdf~~A~~qYI~tI~~-l 398 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDY------------LYGKGDFDEATDQYIETIGF-L 398 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHH------------HHhcCCHHHHHHHHHHHccc-C
Confidence 56677777787788888777543 332 222223333222210 11126999999888765532 1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 187 DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSAL 266 (593)
Q Consensus 187 ~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 266 (593)
.| +.+|.-|....+..+--.+++.+.+.|+ .+...-+.||.+|.+.++.++-.++.+.-. .|..- .-....
T Consensus 399 e~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~a 469 (933)
T KOG2114|consen 399 EP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETA 469 (933)
T ss_pred Ch-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHH
Confidence 33 2467777788888888899999999998 566666789999999999999988888765 33321 114556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 007684 267 LKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIED 303 (593)
Q Consensus 267 l~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~ 303 (593)
+..+.+.+-.++|+.+-.+... .+....+++.
T Consensus 470 l~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille 501 (933)
T KOG2114|consen 470 LEILRKSNYLDEAELLATKFKK-----HEWVLDILLE 501 (933)
T ss_pred HHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH
Confidence 7777788888887755444322 4555555554
No 335
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=38.99 E-value=3.2e+02 Score=25.35 Aligned_cols=50 Identities=12% Similarity=0.073 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 169 LGLKRGFEIFQQMITDKV--DPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
|++.+|.+.|+.+..... +--..+.-.++.++.+.|+++.|...+++..+
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 588899999998886532 22233455677788888999999988888775
No 336
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.49 E-value=3.8e+02 Score=26.05 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHH--HHHHHHHHHhcCCHHHHH
Q 007684 206 PEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGE--SGVVPEEPE--LSALLKLSVDAKKVDKVY 280 (593)
Q Consensus 206 ~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t--~~~Ll~~~~~~g~~~~a~ 280 (593)
++.|.-+.++|.+. |. ..-|+-....|..+|.++.|-..+++.-. .++.|+... |..-+......++...|.
T Consensus 74 yEqaamLake~~kl---sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~ 150 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL---SEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF 150 (308)
T ss_pred HHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 44444555555431 11 23455556666666666655544443321 245565543 555555555555555555
Q ss_pred HHHHHHH
Q 007684 281 EILHRLR 287 (593)
Q Consensus 281 ~~l~~m~ 287 (593)
+++.+.-
T Consensus 151 el~gk~s 157 (308)
T KOG1585|consen 151 ELYGKCS 157 (308)
T ss_pred HHHHHhh
Confidence 5555543
No 337
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=36.12 E-value=1.3e+02 Score=30.50 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=25.4
Q ss_pred CcccccccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 007684 163 RENDSNLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFD 211 (593)
Q Consensus 163 ~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 211 (593)
+.|.++|.+++|++.|..-.... +-|.++|.+-..+|.+...+..|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence 44555666666666665433322 2255566666666666555554443
No 338
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.93 E-value=1.2e+02 Score=28.08 Aligned_cols=59 Identities=8% Similarity=-0.100 Sum_probs=42.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 230 PALFGFCKLGNTDKAYEVDAHMGE-SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 230 ~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
..+.......+.+......+.+++ ....|+...|..++.++...|+.++|.+...++..
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333355555554444444432 35679999999999999999999999999998876
No 339
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=35.83 E-value=97 Score=32.04 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=65.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh-------
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNT------- 241 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~------- 241 (593)
..+-+|.-+++...... +-|...=-.+++.|...|-.+.|.+.|..+.-+.++-|.-.|. +..-+...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s-~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~-~~~r~~~~~~~~~~~~~~ 274 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKS-PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHL-ILDRLSTLGPFKSAPENL 274 (365)
T ss_pred HHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHH-HHHHHhccCcccccchHH
Confidence 46778888888877665 5566666678899999999999999999987666666655544 22323333322
Q ss_pred -hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 007684 242 -DKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILH 284 (593)
Q Consensus 242 -~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~ 284 (593)
+.+..+|..... .+=..++.+ .+.|.+.++.++.+
T Consensus 275 ~~~~~~fy~~~~~-------~~~e~i~~a-f~~gsysKi~ef~~ 310 (365)
T PF09797_consen 275 LENALKFYDNSEK-------ETPEFIIKA-FENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHH-HhCCCchhHHHHHH
Confidence 234444444321 112224444 46676666665543
No 340
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=35.53 E-value=1.3e+02 Score=28.49 Aligned_cols=78 Identities=17% Similarity=0.054 Sum_probs=45.4
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 007684 201 VAKEDPEMAFDLVKQMKSFGIPPK-LRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKV 279 (593)
Q Consensus 201 ~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a 279 (593)
-..|-++.|.-=|.+-.. +.|+ ...||-+---+...|+++.|.+.|+...+..-.-+-...|.=|..| -.|++.-|
T Consensus 76 DSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhh
Confidence 334555555555554443 5577 4577877777778888888888888877654333333333333333 34555555
Q ss_pred HH
Q 007684 280 YE 281 (593)
Q Consensus 280 ~~ 281 (593)
.+
T Consensus 153 q~ 154 (297)
T COG4785 153 QD 154 (297)
T ss_pred HH
Confidence 43
No 341
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=35.40 E-value=1.6e+02 Score=25.27 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=15.6
Q ss_pred hCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 218 SFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 218 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
...+.|+...-...+.++-+.+|+..|.++|+-++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 342
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=34.95 E-value=2.3e+02 Score=22.54 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYE 246 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 246 (593)
.+-++++.+.+.|+ .+......+-.+--..|+.+.|.+++..+. .| | ..|...+.++...|.-+-|.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhhc
Confidence 56788889998884 455555555544446799999999999988 54 3 578889999998887766654
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=34.69 E-value=1.7e+02 Score=27.86 Aligned_cols=79 Identities=10% Similarity=0.014 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE--SGVVPEEPELSALLKL 269 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~Ll~~ 269 (593)
|.+..|+.+.+.+.+++|+.+.++-.+.+- -|..+-..++.-||-.|++++|..-++-.-. ....+...+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 455667788888999999999888776432 3456667789999999999999765554432 3455667789888887
Q ss_pred HH
Q 007684 270 SV 271 (593)
Q Consensus 270 ~~ 271 (593)
-.
T Consensus 82 ea 83 (273)
T COG4455 82 EA 83 (273)
T ss_pred HH
Confidence 63
No 344
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=33.79 E-value=3.3e+02 Score=27.67 Aligned_cols=88 Identities=9% Similarity=0.070 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCcccH--HHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHH-
Q 007684 194 TSVARLAVAKEDPEMAFDLVKQMKSF---GIPPKLRSY--GPALFGFCKLGNTDKAYEVDAHMGE-----SGVVPEEPE- 262 (593)
Q Consensus 194 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty--~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t- 262 (593)
..++...-+.++.++|.+.+++++.. --.|+...| ..+...+...||.+++.+.+.+.+. .|++|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34444555677899999999998642 223666555 4455666678999999999988886 688887766
Q ss_pred HHHHHHH-HHhcCCHHHHHH
Q 007684 263 LSALLKL-SVDAKKVDKVYE 281 (593)
Q Consensus 263 ~~~Ll~~-~~~~g~~~~a~~ 281 (593)
|..+-.- |...|++...+.
T Consensus 159 fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 5555443 445566655543
No 345
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=33.73 E-value=2.7e+02 Score=22.94 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=42.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684 232 LFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~ 291 (593)
+..+...|++++|..+.+.+ ..||...|-+|-.. +.|..+++..-+.+|..+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg~ 99 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASGD 99 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCCC
Confidence 35567899999999988876 47999999887553 78888888888888887654
No 346
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=33.68 E-value=83 Score=31.31 Aligned_cols=69 Identities=17% Similarity=0.344 Sum_probs=40.1
Q ss_pred cHHHHHHHH-HHHHhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 007684 170 GLKRGFEIF-QQMITDKVDPNEA----TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244 (593)
Q Consensus 170 ~~~~a~~l~-~~M~~~g~~p~~~----ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 244 (593)
.+++..... ++|+..++ |+.. .|+.++++ ..|.+-.++..+-.- -.+.+|.+|+.++|..|+.+.+
T Consensus 270 p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsa----veWnKkeelva~qal----rhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 270 PVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSA----VEWNKKEELVAEQAL----RHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred CHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHH----HhhchHHHHHHHHHH----HHHHhhhHHHHHHhcCChHHHH
Confidence 455555444 45777774 5554 45555554 444443333332211 1236899999999999998765
Q ss_pred HHH
Q 007684 245 YEV 247 (593)
Q Consensus 245 ~~l 247 (593)
.-+
T Consensus 341 Ll~ 343 (412)
T KOG2297|consen 341 LLL 343 (412)
T ss_pred HHH
Confidence 433
No 347
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=33.33 E-value=88 Score=28.94 Aligned_cols=56 Identities=16% Similarity=0.028 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--------------CCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSFGI--------------PPKLRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~g~--------------~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
+++-.|-+.-+|.++.++++.|-+..+ .+....-|.....|.+.|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 345567788889999999998854322 34445667777777888888888877774
No 348
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=33.32 E-value=4.6e+02 Score=25.50 Aligned_cols=169 Identities=15% Similarity=0.068 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHHH
Q 007684 102 SPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ 180 (593)
Q Consensus 102 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~ 180 (593)
.|...+-.-...-.+.|++++|.+.|+.+.+.. +-+..+=.++|. +|+.- +.++.++|+..+++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Y--------------k~~~y~~A~~~~dr 96 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYY--------------KNGEYDLALAYIDR 96 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHH--------------hcccHHHHHHHHHH
Confidence 355554444445567899999999999999763 223333233332 33332 13699999999999
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHh-------cCChHHHHHHHHHHHh--CCCCCCcc------c-----------H-HHHH
Q 007684 181 MITDK-VDPNEATFTSVARLAVA-------KEDPEMAFDLVKQMKS--FGIPPKLR------S-----------Y-GPAL 232 (593)
Q Consensus 181 M~~~g-~~p~~~ty~~li~~~~~-------~g~~~~A~~l~~~m~~--~g~~p~~~------t-----------y-~~li 232 (593)
..... -.|| .-|-.-|.+++. ..|...+.+-+..|++ ... |+.+ . + ..+.
T Consensus 97 Fi~lyP~~~n-~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-PnS~Ya~dA~~~i~~~~d~LA~~Em~Ia 174 (254)
T COG4105 97 FIRLYPTHPN-ADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-PNSRYAPDAKARIVKLNDALAGHEMAIA 174 (254)
T ss_pred HHHhCCCCCC-hhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 76643 3344 345555555553 2344445555555542 112 4321 1 0 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 233 FGFCKLGNTDKAYEVDAHMGESGVVPE---EPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 233 ~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
.-|.+.|.+..|..=+++|.+. ..-+ ...+-.|..+|...|..++|...-.-+..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 6677889999998888888875 3222 23366677788888888877766555543
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=33.15 E-value=69 Score=31.48 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=68.8
Q ss_pred HHHHHHHhcCCCcccCCCCcccccchHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTMSNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLL 146 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll 146 (593)
..=|.+++.-+++.++....-+.. ......|..+...-|-.|+|.+....+.++-....+.--.-+...|.++.
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyY------q~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~va 160 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYY------QVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVA 160 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHh------cCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHH
Confidence 445779999999999888765554 23335677778888888999999999999988877653333445688888
Q ss_pred HHHHccCCCCCCCCCCCcccccccHHHHHHHH
Q 007684 147 YVCSCKCGSESSENGDRENDSNLGLKRGFEIF 178 (593)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~ 178 (593)
.+|... -..-.|.+++|.++.
T Consensus 161 ELyLl~-----------VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 161 ELYLLH-----------VLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHH-----------HHhccccHHHHHHHH
Confidence 877663 122247888998877
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=33.14 E-value=1.6e+02 Score=29.28 Aligned_cols=71 Identities=15% Similarity=0.152 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHHH
Q 007684 192 TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG-----ESGVVPEEPEL 263 (593)
Q Consensus 192 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~ 263 (593)
+++...+.|..+|.+.+|.++.+...+..- .+...|--++..++..||--.|..-++.|. +-|+.-+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 455667778888888888888887776432 455667778888888888555555555443 24666555443
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=32.77 E-value=1.3e+02 Score=23.38 Aligned_cols=47 Identities=15% Similarity=0.022 Sum_probs=36.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 007684 237 KLGNTDKAYEVDAHMGESGVVPE--EPELSALLKLSVDAKKVDKVYEIL 283 (593)
Q Consensus 237 ~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Ll~~~~~~g~~~~a~~~l 283 (593)
...+.++|...+....+.-..+. ..++..|+.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999998876543333 245888999999999999888763
No 352
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.13 E-value=5e+02 Score=25.54 Aligned_cols=170 Identities=14% Similarity=0.059 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHH-----hCCCCCCcccHHHHHHHHHh
Q 007684 166 DSNLGLKRGFEIFQQMITDKVDPNEATFTSV---ARLAVAKEDPEMAFDLVKQMK-----SFGIPPKLRSYGPALFGFCK 237 (593)
Q Consensus 166 ~~~g~~~~a~~l~~~M~~~g~~p~~~ty~~l---i~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~ty~~li~~~~~ 237 (593)
.+....++|+.-|++..+..-.-.+--|.+| |....+.+++++.++.+.+|. ..--.-+..+.|+++.--..
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Q ss_pred cCChhHHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH-----------HHHHH
Q 007684 238 LGNTDKAYEVDAHMG-----ESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES-----------TFKII 301 (593)
Q Consensus 238 ~g~~~~A~~l~~~m~-----~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~-----------t~~~l 301 (593)
..+.+--.++|+.-. ..+-+.-..|-..|-..|...|.+.+...+++++..+-..-+.. .|.+=
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Q ss_pred HHHHhcchhhhhccccchh----------hhHHHhhhcCCCccc
Q 007684 302 EDWFDSVDAAEIGVLNWDV----------SKVREGIVRGGGGWH 335 (593)
Q Consensus 302 ~~~~~~~~~~~~~~~~~d~----------~~~~~~~~~~g~~~~ 335 (593)
+..|....+-..-...++. ..+...+.+.||+.|
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMH 241 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMH 241 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccc
No 353
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=32.04 E-value=5.6e+02 Score=26.93 Aligned_cols=129 Identities=9% Similarity=-0.067 Sum_probs=88.8
Q ss_pred CCCCcccccccHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCC-CCCcccHH
Q 007684 160 NGDRENDSNLGLKRGFEIFQQMI----TDKVD-PNEATFTSVARLAVAKEDPEMAFDLVKQMKS----FGI-PPKLRSYG 229 (593)
Q Consensus 160 ~~~~~~~~~g~~~~a~~l~~~M~----~~g~~-p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~~~ty~ 229 (593)
.+-+.|...|+++.|+...+.-. +-|=. ....++++|.+++.-.|+++.|.+.++.-.. .|- .....+.-
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY 279 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY 279 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 33455666789999987766432 23321 2335789999999999999999999887532 221 11123333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 230 PALFGFCKLGNTDKAYEVDAHMGE----S-GVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 230 ~li~~~~~~g~~~~A~~l~~~m~~----~-g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+|-++|.-..++++|++.+.+-.. . ...-....+-+|-.++..-|..++|+.+.+.-.+
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 488888888899999988775432 1 1223456788899999999999999988776554
No 354
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=31.87 E-value=5.8e+02 Score=28.75 Aligned_cols=65 Identities=20% Similarity=0.104 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCcccCCCCccccc---chHHhhhhcCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 007684 67 GLCTLAFSKKSTVNESSAPNTGTM---SNKSKKKARRESPEGVLRHKLDMCSKRGDVFEALRLYDDARSN 133 (593)
Q Consensus 67 ~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 133 (593)
.+|..+-.+.-.++.|+..|-..- ..+.-++.+-..+...-.+-|.+| -|.+++|.++|-+|-++
T Consensus 696 rllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 696 RLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh
Confidence 555554445555555555552221 001111122222333344555554 37889999998887766
No 355
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=31.58 E-value=7.8e+02 Score=28.54 Aligned_cols=201 Identities=15% Similarity=0.024 Sum_probs=106.4
Q ss_pred HHhcCCCcccCCCCcccccchHHhhhhcCCCCH----HHHHHHHHH-HHcCCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 007684 72 AFSKKSTVNESSAPNTGTMSNKSKKKARRESPE----GVLRHKLDM-CSKRGDVFEALRLYDDARSN----GITLSQHHY 142 (593)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~-~~~~g~~~~A~~l~~~m~~~----g~~p~~~ty 142 (593)
......++.+|..+..+.... ++ ....... ..+++|=.. ....|++++|.++-+...+. -..+....+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~-l~--~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHF-LK--APMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHccChHHHHHHHHHHHHH-hC--cCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 455678889998888666522 22 1111222 225554433 34468999999998887654 122233333
Q ss_pred HHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHH---HHHHHHH--HHHhcCCh--HHHHHHHHH
Q 007684 143 NVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEA---TFTSVAR--LAVAKEDP--EMAFDLVKQ 215 (593)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~---ty~~li~--~~~~~g~~--~~A~~l~~~ 215 (593)
.++-.+..- .|++++|..+..+-.+..-.-+.. .+..+.. .+-..|+. .+....|..
T Consensus 501 sv~~~a~~~----------------~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~ 564 (894)
T COG2909 501 SVLGEAAHI----------------RGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNL 564 (894)
T ss_pred hhhhHHHHH----------------hchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333322 268999988887766542222333 2333322 34455632 223333333
Q ss_pred HHhC-----CC-CCCcccHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHH
Q 007684 216 MKSF-----GI-PPKLRSYGPALFGFCKLGNTDKAYEV----DAHMGESGVVPEEPELS--ALLKLSVDAKKVDKVYEIL 283 (593)
Q Consensus 216 m~~~-----g~-~p~~~ty~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~--~Ll~~~~~~g~~~~a~~~l 283 (593)
.... .+ .+-..++..++.++.+ .+.+..- ++--......|-..-+. .|...+...|+.++|...+
T Consensus 565 ~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l 641 (894)
T COG2909 565 IREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQL 641 (894)
T ss_pred HHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3211 11 1234667777777776 3333322 22222222223333333 6778888899999999999
Q ss_pred HHHHHccCCCC
Q 007684 284 HRLRTLVRQVS 294 (593)
Q Consensus 284 ~~m~~~~~~~~ 294 (593)
+++......+.
T Consensus 642 ~~~~~l~~~~~ 652 (894)
T COG2909 642 DELERLLLNGQ 652 (894)
T ss_pred HHHHHHhcCCC
Confidence 99887555443
No 356
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.55 E-value=3.5e+02 Score=32.29 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=23.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
.|+.-+...++.-+|-++..+-.. .+.-.+.-||+...+++|..+-..
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s--------d~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS--------DPEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc--------CHHHHHHHHhhHhHHHHHHHHHHh
Confidence 445555555555555555554432 122344455555555555554443
No 357
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=31.53 E-value=4.8e+02 Score=29.86 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----------------
Q 007684 170 GLKRGFEIFQQMIT--------DKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKL---------------- 225 (593)
Q Consensus 170 ~~~~a~~l~~~M~~--------~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---------------- 225 (593)
..++...+++.... .++..+..+...|+... .|+..+++.+++.+.........
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Q ss_pred ----------ccHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 007684 226 ----------RSYGPALFGFCK---LGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVD 277 (593)
Q Consensus 226 ----------~ty~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~ 277 (593)
.+|+ .|+++.+ .+|++.|...+..|.+.|..|....-..++-++..-|..+
T Consensus 247 ~~~~ydk~gd~hyd-~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdiglad 310 (725)
T PRK13341 247 RAVLYDKEGDAHFD-TISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLAD 310 (725)
T ss_pred hhhhcccCCCCCHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCC
No 358
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.26 E-value=2e+02 Score=25.24 Aligned_cols=59 Identities=19% Similarity=0.126 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHHHHHHHHHHHh
Q 007684 247 VDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSESTFKIIEDWFD 306 (593)
Q Consensus 247 l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~t~~~l~~~~~ 306 (593)
+.+.+.+.|++++.. -..+++.+...+..-.|.++++.+++.+...+..|.--.++.|.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 334444556655443 33455555555555666677777766666666555544444443
No 359
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=30.75 E-value=2.3e+02 Score=24.39 Aligned_cols=59 Identities=10% Similarity=0.085 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHH
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPAL 232 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 232 (593)
+..+-++.+..-.+.|+.....+-+++|-+..|+..|.++|+-++.+ +.+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 45556666677788999999999999999999999999999999863 223333455443
No 360
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.31 E-value=5.6e+02 Score=25.49 Aligned_cols=89 Identities=11% Similarity=-0.046 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 007684 169 LGLKRGFEIFQQMITDKV----DPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKA 244 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~----~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 244 (593)
+-.+.|.+.|++....+. ..+...-..++...++.|+.+.-..+++..+.. ++...-..++.+++-..+.+..
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~ 220 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELL 220 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHH
Confidence 457788888888877422 345555666777777777766655555555442 3455667788888888887777
Q ss_pred HHHHHHHHhCC-CCCCH
Q 007684 245 YEVDAHMGESG-VVPEE 260 (593)
Q Consensus 245 ~~l~~~m~~~g-~~p~~ 260 (593)
.++++.....+ +++..
T Consensus 221 ~~~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 221 KRLLDLLLSNDKVRSQD 237 (324)
T ss_dssp HHHHHHHHCTSTS-TTT
T ss_pred HHHHHHHcCCcccccHH
Confidence 77777777643 54444
No 361
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=29.83 E-value=5.7e+02 Score=25.48 Aligned_cols=111 Identities=13% Similarity=0.135 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHH-HHHccCCCCCCCCCCCcccccccHHHHHHHHH
Q 007684 105 GVLRHKLDMCSKRGDVFEALRLYDDAR----SNGITLSQHHYNVLLY-VCSCKCGSESSENGDRENDSNLGLKRGFEIFQ 179 (593)
Q Consensus 105 ~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~ty~~ll~-~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~ 179 (593)
..+..+-.-|++.+|.+.+.++.++.. ..|.+.|+....+-|. .|... .-+++-++..+
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~----------------~vV~e~lE~~~ 179 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR----------------KVVEESLEVAD 179 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH----------------HHHHHHHHHHH
Confidence 347888899999999999988876644 4477777765555454 34443 25677888888
Q ss_pred HHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 007684 180 QMITDKVDPNE----ATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALF 233 (593)
Q Consensus 180 ~M~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 233 (593)
.|.+.|-.-+. -+|-.+-. ....++.+|-.++-+....--...+.+|..+..
T Consensus 180 ~~iEkGgDWeRrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vr 235 (412)
T COG5187 180 DIIEKGGDWERRNRYKVYKGIFK--MMRRNFKEAAILLSDILPTFESSELISYSRAVR 235 (412)
T ss_pred HHHHhCCCHHhhhhHHHHHHHHH--HHHHhhHHHHHHHHHHhccccccccccHHHHHH
Confidence 89888854332 24444432 233567777777776653222223445554443
No 362
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=29.66 E-value=1.6e+02 Score=29.85 Aligned_cols=88 Identities=9% Similarity=-0.114 Sum_probs=60.0
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 007684 198 RLAVAKEDPEMAFDLVKQMKSFGIPP-KLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKV 276 (593)
Q Consensus 198 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~ 276 (593)
+-|.+.|.+++|.+.|..-.. +.| +.++|..-..+|.+...+..|+.=.......+- .-...|+.=..+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 457899999999999987665 446 788888889999998888877776666543210 0122354444444455677
Q ss_pred HHHHHHHHHHHH
Q 007684 277 DKVYEILHRLRT 288 (593)
Q Consensus 277 ~~a~~~l~~m~~ 288 (593)
.+|.+=++...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 777776666654
No 363
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=29.15 E-value=4.3e+02 Score=26.53 Aligned_cols=57 Identities=9% Similarity=-0.045 Sum_probs=36.9
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHH-HhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHh
Q 007684 380 SSLSNLACQREVRSDFNKFQEWL-GRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQ 439 (593)
Q Consensus 380 ~~i~~l~~~~~~~~a~~~f~~~l-~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~ 439 (593)
.++.+. ..|+.++|...+.+++ +.|.+++.++..+..... ..|+...+..+++.+.+
T Consensus 257 ~l~~ai-~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~--~~~~~~~l~~~~~~l~~ 314 (337)
T PRK12402 257 SLLDAA-EAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVAR--SRYRGDNLARLHRLAAD 314 (337)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHH
Confidence 444444 4567889999999987 677777777766543222 23666667777766654
No 364
>PF13470 PIN_3: PIN domain
Probab=28.75 E-value=47 Score=27.75 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=19.3
Q ss_pred CCChHHHHHHHHhCCc-EEEecch
Q 007684 486 SNDDWYWLYATVNCKS-LLVTNDE 508 (593)
Q Consensus 486 s~DD~~~lyaa~~~~~-~~vs~D~ 508 (593)
-.||.+++.+|+..++ .|||+|.
T Consensus 95 D~~D~~~la~A~~~~ad~iVT~D~ 118 (119)
T PF13470_consen 95 DPDDAHVLAAAIAAKADYIVTGDK 118 (119)
T ss_pred CccHHHHHHHHHHcCCCEEEeCCC
Confidence 4588899999999864 8999984
No 365
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.42 E-value=2.4e+02 Score=24.81 Aligned_cols=64 Identities=19% Similarity=0.086 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 007684 211 DLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKK 275 (593)
Q Consensus 211 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~ 275 (593)
++.+.+++.|++++. -=-.++..+...++.-.|.++++++.+.+...+..|-=.-++.+...|-
T Consensus 7 ~~~~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 7 DAIERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 455566677776553 2334777777777778888888888887766666663334455555553
No 366
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.17 E-value=84 Score=23.09 Aligned_cols=47 Identities=13% Similarity=0.055 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 170 GLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
.++.+.++++.++.. .-|-.---.+|.++...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555555555432 12333444678999999999999999988864
No 367
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=28.14 E-value=4.7e+02 Score=24.37 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCCCcccHHHHHH-HHHhcCC--hhHHH
Q 007684 171 LKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS--FGIPPKLRSYGPALF-GFCKLGN--TDKAY 245 (593)
Q Consensus 171 ~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~ty~~li~-~~~~~g~--~~~A~ 245 (593)
-++++.+-+++. -++..+-...+.|++++|.+-++++.+ ..+.--...|..+.. +||..+. +-+|.
T Consensus 19 REE~l~lsRei~---------r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 19 REEALKLSREIV---------RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 345555555543 456666667888999999888888743 112223456666666 7777764 44666
Q ss_pred HHHHHHHhC
Q 007684 246 EVDAHMGES 254 (593)
Q Consensus 246 ~l~~~m~~~ 254 (593)
.++.-+...
T Consensus 90 ~l~~~l~~~ 98 (204)
T COG2178 90 LLYSILKDG 98 (204)
T ss_pred HHHHHHhcC
Confidence 666666543
No 368
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=28.08 E-value=2.4e+02 Score=24.15 Aligned_cols=41 Identities=15% Similarity=0.099 Sum_probs=23.9
Q ss_pred HHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHH
Q 007684 244 AYEVDAHMGESGVVPEEPE-LSALLKLSVDAKKVDKVYEILH 284 (593)
Q Consensus 244 A~~l~~~m~~~g~~p~~~t-~~~Ll~~~~~~g~~~~a~~~l~ 284 (593)
+.++|..|...|+--..+. |......+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4556666666665444433 5555555556666666666654
No 369
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=27.96 E-value=6.3e+02 Score=25.31 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=50.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HccCCCCHHHH
Q 007684 227 SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLR-----TLVRQVSESTF 298 (593)
Q Consensus 227 ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~-----~~~~~~~~~t~ 298 (593)
+.+-.-..|..+|.+.+|.++.+...... +.++..+-.|+..+...|+--.|..-++++. +-|+.++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556778889999999999998877533 2466678888999999998666655555553 35666665443
No 370
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=27.66 E-value=1.4e+02 Score=23.04 Aligned_cols=8 Identities=13% Similarity=0.102 Sum_probs=3.4
Q ss_pred HHHhcCCh
Q 007684 199 LAVAKEDP 206 (593)
Q Consensus 199 ~~~~~g~~ 206 (593)
.++..|+.
T Consensus 32 ~A~~~~~~ 39 (89)
T PF12796_consen 32 YAAENGNL 39 (89)
T ss_dssp HHHHTTTH
T ss_pred HHHHcCCH
Confidence 33444443
No 371
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.22 E-value=5e+02 Score=23.91 Aligned_cols=126 Identities=11% Similarity=0.046 Sum_probs=85.7
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc-cHHHHHHH--HHhcCChhHH
Q 007684 169 LGLKRGFEIFQQMITDKVDPNEA-TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLR-SYGPALFG--FCKLGNTDKA 244 (593)
Q Consensus 169 g~~~~a~~l~~~M~~~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-ty~~li~~--~~~~g~~~~A 244 (593)
+..++|+.-|.++.+.|..--.+ .---.....+..|+...|...|+++..-.-.|-.. -..-|=.+ +...|-++..
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 47899999999999887643222 11122334567899999999999997643334432 22223333 3467888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCC
Q 007684 245 YEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 245 ~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~ 294 (593)
..-.+-+-..+-......-.+|--+--+.|++.+|...|..+.+.-..|.
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 87777776544444444566777777799999999999999987544443
No 372
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.62 E-value=3.8e+02 Score=22.82 Aligned_cols=42 Identities=31% Similarity=0.153 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCCCc-ccHHHHHHHHHhcCChhHHHHHHH
Q 007684 208 MAFDLVKQMKSFGIPPKL-RSYGPALFGFCKLGNTDKAYEVDA 249 (593)
Q Consensus 208 ~A~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~l~~ 249 (593)
.+.++|+.|...|+--.. .-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555444442221 233444444444444444444443
No 373
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.50 E-value=3.5e+02 Score=30.17 Aligned_cols=77 Identities=14% Similarity=0.063 Sum_probs=53.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCChh------HHHHHHHHHHhCCCCCCHHHHHHH
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSFGI--PPKLRSYGPALFGFCKLGNTD------KAYEVDAHMGESGVVPEEPELSAL 266 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~ty~~li~~~~~~g~~~------~A~~l~~~m~~~g~~p~~~t~~~L 266 (593)
+|..+|...|++-.+.++++.....+- +.=...||.-|+.+.+.|.++ .|.++++. ..+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 788899999999999999998875322 222456788888888888654 23333333 3466688888888
Q ss_pred HHHHHhcC
Q 007684 267 LKLSVDAK 274 (593)
Q Consensus 267 l~~~~~~g 274 (593)
+.+.....
T Consensus 110 ~~~sln~t 117 (1117)
T COG5108 110 CQASLNPT 117 (1117)
T ss_pred HHhhcChH
Confidence 87765543
No 374
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=26.40 E-value=3.7e+02 Score=28.67 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 007684 168 NLGLKRGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEV 247 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 247 (593)
.|++-.|-+-+....... +-+....-.........|+++.+.+.+....+. +.....+-.+++...-+.|++++|..+
T Consensus 302 ~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 248 DAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 248 ~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
-+.|....++ ++.....-...-..-|-+|+++..++++
T Consensus 380 a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 380 AEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHH
No 375
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.12 E-value=2.2e+02 Score=27.52 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=34.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 230 PALFGFCKLGNTDKAYEVDAHMGE----SG-VVPEEPELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 230 ~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
-|-..|.+.|++++|.++|+.+.. .| ..+...+...|..++...|+.+....+.-+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 355666677777777777776642 22 2234445666677777777777776665544
No 376
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=25.65 E-value=1.7e+02 Score=22.59 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=42.9
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 007684 199 LAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP---ELSALLKLSVDAKK 275 (593)
Q Consensus 199 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~Ll~~~~~~g~ 275 (593)
.+++.|+++....+++ .+...+. -+..+...+..|+.+ +++.+.+.|..++.. -++.|.- .+..|.
T Consensus 3 ~A~~~~~~~~~~~ll~----~~~~~~~--~~~~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 71 (89)
T PF12796_consen 3 IAAQNGNLEILKFLLE----KGADINL--GNTALHYAAENGNLE----IVKLLLENGADINSQDKNGNTALHY-AAENGN 71 (89)
T ss_dssp HHHHTTTHHHHHHHHH----TTSTTTS--SSBHHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTH
T ss_pred HHHHcCCHHHHHHHHH----CcCCCCC--CCCHHHHHHHcCCHH----HHHHHHHhcccccccCCCCCCHHHH-HHHcCC
Confidence 4566777766655555 3333333 222666666778764 444444566666553 2344444 345565
Q ss_pred HHHHHHHHHHHHHccCCCC
Q 007684 276 VDKVYEILHRLRTLVRQVS 294 (593)
Q Consensus 276 ~~~a~~~l~~m~~~~~~~~ 294 (593)
.+ +++.+.+.|..++
T Consensus 72 ~~----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 LE----IVKLLLEHGADVN 86 (89)
T ss_dssp HH----HHHHHHHTTT-TT
T ss_pred HH----HHHHHHHcCCCCC
Confidence 44 4556666666654
No 377
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=25.47 E-value=1.3e+02 Score=27.25 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=54.7
Q ss_pred eeeeccceecccCC------CCChh----hHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcchHHHHHHHHhCCcE
Q 007684 410 AVIDGANVGLVNQH------NFSFY----QLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRDGGAL 479 (593)
Q Consensus 410 ~vidg~nv~~~~~~------~~~~~----~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (593)
++|||-||-+.... ..+++ +|...+..+.+ ..+....||+--....+... .. +.. ..=.+
T Consensus 1 LlIDGYNli~~~~~l~~~~~~~~l~~aR~~Li~~L~~y~~--~~~~~v~VVFDa~~~~~~~~-~~------~~~-~gi~V 70 (166)
T PF05991_consen 1 LLIDGYNLIHAWPELRSLAERGDLEAARERLIEMLSEYAQ--FSGYEVIVVFDAYKVPGGSE-ER------EEY-GGIEV 70 (166)
T ss_pred CeEcchhhhCCCHHHHhhcCcCCHHHHHHHHHHHHHHHhc--ccCCEEEEEEeCCcCCCCCc-ee------eee-CceEE
Confidence 47999998766332 11222 44444445554 23566677764333222110 00 011 12245
Q ss_pred EeCCC-CCCChHHHHHHHHhC----CcEEEecchh-hccccc----cccccchhhhhcc
Q 007684 480 YTTPP-GSNDDWYWLYATVNC----KSLLVTNDEM-RDHLFQ----LLGTSFFPRWKEK 528 (593)
Q Consensus 480 ~~~~~-~s~DD~~~lyaa~~~----~~~~vs~D~~-rdh~~~----~~~~~~f~~w~~~ 528 (593)
.+|+. .+.||+--=++.-.. ++.+||.|.+ +.+.+. .++.+-|.+|-..
T Consensus 71 vft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~~~GA~~iss~ef~~~l~~ 129 (166)
T PF05991_consen 71 VFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRAARGRGAKRISSEEFLRELKA 129 (166)
T ss_pred EECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHHHhhCCCEEEcHHHHHHHHHH
Confidence 56665 677776544444432 6899999975 444443 2333445555443
No 378
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=24.62 E-value=1.3e+02 Score=16.73 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 007684 193 FTSVARLAVAKEDPEMAFDLVKQMK 217 (593)
Q Consensus 193 y~~li~~~~~~g~~~~A~~l~~~m~ 217 (593)
|..+...+...++++.|...+++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555566666666555544
No 379
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.54 E-value=1.1e+02 Score=22.55 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 007684 205 DPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGE 253 (593)
Q Consensus 205 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 253 (593)
.++.+.++++.++.. +-|-..--.+|.+|...|++++|.+..+++..
T Consensus 5 ~~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556666666431 12334455689999999999999999988763
No 380
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.88 E-value=9.4e+02 Score=25.99 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=65.9
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 007684 172 KRGFEIFQQM-ITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAH 250 (593)
Q Consensus 172 ~~a~~l~~~M-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~ 250 (593)
++..+.++.. ...|+..+......+++ ...|++..|+.++++....+ ....++..+...+
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~~~--~~~it~~~V~~~l--------------- 243 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIVFT--DSKLTGVKIRKMI--------------- 243 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHHhC--CCCcCHHHHHHHh---------------
Confidence 3444545543 45788888888777664 45699999999999876432 1224444443222
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCCCHH
Q 007684 251 MGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQVSES 296 (593)
Q Consensus 251 m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~~~~ 296 (593)
|+ .+...+..++++....+....|+.++.+|.+.|..|..-
T Consensus 244 ----g~-~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 244 ----GY-HGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred ----CC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 33 356667777777766666678888999998888776543
No 381
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=23.57 E-value=5.9e+02 Score=23.48 Aligned_cols=114 Identities=11% Similarity=0.039 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHh-----CCCCCCc-ccHHHHHHHHHhcC--
Q 007684 171 LKRGFEIFQQMITDKVDPNEATFTSV---ARLAVAKEDPEMAFDLVKQMKS-----FGIPPKL-RSYGPALFGFCKLG-- 239 (593)
Q Consensus 171 ~~~a~~l~~~M~~~g~~p~~~ty~~l---i~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~-~ty~~li~~~~~~g-- 239 (593)
++.|.+.++.-...+ +.|...++.- +.-+++.....++.+++++... ..+.|+. .++-++-.+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 455666666544444 4455544433 3334444444455555554421 2366884 67777777776544
Q ss_pred --ChhHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccC
Q 007684 240 --NTDKAYEVDAHMGE-----SGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVR 291 (593)
Q Consensus 240 --~~~~A~~l~~~m~~-----~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~ 291 (593)
+..+|.+.|++..+ ....|+...|+.-+... ++|-++..++.+.+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 44455555554431 24568888888888776 345566666655443
No 382
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=22.82 E-value=6.5e+02 Score=26.02 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=77.3
Q ss_pred cccHHHHHHHHHHHHh-C----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCCc-ccHHH-----HH
Q 007684 168 NLGLKRGFEIFQQMIT-D----KVDPNEATFTSVARLAVAKEDPEMAFDLVKQMK----SFGIPPKL-RSYGP-----AL 232 (593)
Q Consensus 168 ~g~~~~a~~l~~~M~~-~----g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~-~ty~~-----li 232 (593)
.+.++++++.|+.... . .-......|..|-..|....|.++|.-+..+.. ..++ -|. .-|.. |-
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l-~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL-KDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc-CchhHHHHHHHHHHHH
Confidence 3578999999987543 1 112344678899999999999999876665543 2333 222 12322 44
Q ss_pred HHHHhcCChhHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 007684 233 FGFCKLGNTDKAYEVDAHMG----ESGVVPE-EPELSALLKLSVDAKKVDKVYEILHRLR 287 (593)
Q Consensus 233 ~~~~~~g~~~~A~~l~~~m~----~~g~~p~-~~t~~~Ll~~~~~~g~~~~a~~~l~~m~ 287 (593)
-++-..|..-.|.+..++.. .+|-++. ....-.+.+.|...|+.|.|+.-|+...
T Consensus 214 ValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 56677888888888777654 3453332 2224567788888999999887776653
No 383
>PHA02875 ankyrin repeat protein; Provisional
Probab=22.66 E-value=4.6e+02 Score=27.33 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=43.3
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 007684 177 IFQQMITDKVDPNEA--TFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMGES 254 (593)
Q Consensus 177 l~~~M~~~g~~p~~~--ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~ 254 (593)
+.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++.-....-..+..-.+ .+...+..|+.+ +.+.+.+.
T Consensus 50 ~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~~----iv~~Ll~~ 124 (413)
T PHA02875 50 AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKLD----IMKLLIAR 124 (413)
T ss_pred HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCHH----HHHHHHhC
Confidence 444555566555432 11234455566777776655554221100001111223 344445566654 33334444
Q ss_pred CCCCCHHH--HHHHHHHHHhcCCHHHHHH
Q 007684 255 GVVPEEPE--LSALLKLSVDAKKVDKVYE 281 (593)
Q Consensus 255 g~~p~~~t--~~~Ll~~~~~~g~~~~a~~ 281 (593)
|..|+... -.+.+...+..|+.+-+..
T Consensus 125 gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 125 GADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 55554322 1123333345666544433
No 384
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.57 E-value=4.6e+02 Score=26.35 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----------cCChh
Q 007684 173 RGFEIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCK----------LGNTD 242 (593)
Q Consensus 173 ~a~~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----------~g~~~ 242 (593)
.-.++++.|++.++.|.-.+|-=+.-.+++.=.+..+..+++.+..- ..-|..++..||. .|++.
T Consensus 261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~ 335 (370)
T KOG4567|consen 261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFT 335 (370)
T ss_pred hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchH
Confidence 34788888999999999888888888888888888999999988652 2226666666664 68888
Q ss_pred HHHHHHHHH
Q 007684 243 KAYEVDAHM 251 (593)
Q Consensus 243 ~A~~l~~~m 251 (593)
.-+++++.-
T Consensus 336 ~nmkLLQ~y 344 (370)
T KOG4567|consen 336 VNMKLLQNY 344 (370)
T ss_pred HHHHHHhcC
Confidence 888888764
No 385
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.53 E-value=4e+02 Score=21.20 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 176 EIFQQMITDKVDPNEATFTSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 176 ~l~~~M~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
++|+-....|+..|...|-.++....-.=-++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7888888888888888888888888777778888888888864
No 386
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.41 E-value=7.1e+02 Score=28.41 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 007684 103 PEGVLRHKLDMCSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSC 151 (593)
Q Consensus 103 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~ 151 (593)
+..+....|..+.-.|++++|-++.-.|... +..-|---+.-++.
T Consensus 391 i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 391 IKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence 3445677777777777777777777666655 44444444444443
No 387
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=22.36 E-value=4e+02 Score=21.18 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=28.3
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 246 EVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 246 ~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
++|+-....|+..|...|..+++.+.-+=-.+.+..+++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666677777777777777766555556666666666644
No 388
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=21.98 E-value=9.5e+02 Score=25.33 Aligned_cols=20 Identities=5% Similarity=0.031 Sum_probs=13.4
Q ss_pred HHHhcCCCcccCCCCccccc
Q 007684 71 LAFSKKSTVNESSAPNTGTM 90 (593)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~ 90 (593)
..+...|++++|+.-.++..
T Consensus 91 a~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 91 ATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred HHHHHHHhHhhcccchhhhe
Confidence 35566677888877775555
No 389
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=21.95 E-value=3.5e+02 Score=22.68 Aligned_cols=88 Identities=19% Similarity=0.282 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH-HhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 007684 172 KRGFEIFQQMIT-DKVDP-NEATFTSVARLAVAKEDPEMAFDLVKQM-KSFGIPPKLRSYGPALFGFCKLGNTDKAYEVD 248 (593)
Q Consensus 172 ~~a~~l~~~M~~-~g~~p-~~~ty~~li~~~~~~g~~~~A~~l~~~m-~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~ 248 (593)
+++.+.+.+++. .|+.| |..+=-++-..+..-..++. ..+ -..|+..+..|+. |+.+.....+
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-----~~~~~d~g~e~~~~t~~---------Ge~~~~~~~l 71 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-----EDIKDDSGLELNWKTFT---------GEYDDIYEAL 71 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-----CccCCCCCeEEeeeeec---------CchHHHHHHH
Confidence 467777777764 68888 66655555444444333330 011 1234444555554 7777777666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007684 249 AHMGESGVVPEEPELSALLKLSVDAK 274 (593)
Q Consensus 249 ~~m~~~g~~p~~~t~~~Ll~~~~~~g 274 (593)
-.+.. |...|..++...+.+....|
T Consensus 72 l~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 72 LKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 66555 66678888888888876655
No 390
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=21.85 E-value=6.8e+02 Score=23.62 Aligned_cols=92 Identities=18% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHHHHhCCCCCCHHHH
Q 007684 114 CSKRGDVFEALRLYDDARSNGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQMITDKVDPNEATF 193 (593)
Q Consensus 114 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~M~~~g~~p~~~ty 193 (593)
+.+.|++++|.+-|.+..+. +++...--.+++..-... +..+.+.++.|++--.+..+.+ +-..-+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraa-----------a~iKl~k~e~aI~dcsKaiel~-pty~kAl 171 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAA-----------ALIKLRKWESAIEDCSKAIELN-PTYEKAL 171 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHH-----------HHHHhhhHHHHHHHHHhhHhcC-chhHHHH
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 007684 194 TSVARLAVAKEDPEMAFDLVKQMKS 218 (593)
Q Consensus 194 ~~li~~~~~~g~~~~A~~l~~~m~~ 218 (593)
.--..+|-+...+++|++=|+++.+
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
No 391
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.31 E-value=2.2e+02 Score=23.34 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=11.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 007684 195 SVARLAVAKEDPEMAFDLVKQM 216 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m 216 (593)
.+|.-|...++.++|...++++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666665555554
No 392
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=21.30 E-value=3.7e+02 Score=24.32 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHH
Q 007684 278 KVYEILHRLRTLVRQVSESTFKIIEDWF 305 (593)
Q Consensus 278 ~a~~~l~~m~~~~~~~~~~t~~~l~~~~ 305 (593)
.|.++++++.+.+..++..|.--.+..|
T Consensus 43 Sa~eI~~~L~~~~~~is~aTVYRtL~~L 70 (169)
T PRK11639 43 SAYDLLDLLREAEPQAKPPTVYRALDFL 70 (169)
T ss_pred CHHHHHHHHHhhCCCCCcchHHHHHHHH
Confidence 3444444444443333333333333333
No 393
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=21.01 E-value=3.7e+02 Score=27.37 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=50.5
Q ss_pred HHhcCCcCeeeeccceecccCCCCChhhHHHHHHHHHhhCCCCCceEEEecCCCcCCCCCCCcchHHHHHHHHh--CCcE
Q 007684 402 LGRHGPFDAVIDGANVGLVNQHNFSFYQLNTVVNRLRQMSPSKRMPLVILHKGRVSGGPAQIPKNKKLLDIWRD--GGAL 479 (593)
Q Consensus 402 l~~~~~~d~vidg~nv~~~~~~~~~~~~l~~vv~~l~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 479 (593)
+..|.+||..+-...- ..+..+.+++.++++.+......++..++++..-+. +.....-++++.+.+ .+.+
T Consensus 66 ~~~g~HPD~~~i~~~~---~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~----m~~~aaNaLLK~LEEPp~~~~ 138 (328)
T PRK05707 66 LRAGSHPDNFVLEPEE---ADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEA----MNRNAANALLKSLEEPSGDTV 138 (328)
T ss_pred HhcCCCCCEEEEeccC---CCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhh----CCHHHHHHHHHHHhCCCCCeE
Confidence 3446677765432210 012356678888888877644445555556654332 223333456666665 2344
Q ss_pred EeCCCCCCChHHHHHHHHhCCcEEE
Q 007684 480 YTTPPGSNDDWYWLYATVNCKSLLV 504 (593)
Q Consensus 480 ~~~~~~s~DD~~~lyaa~~~~~~~v 504 (593)
|. ...+++.-|..|+.|+|..+
T Consensus 139 fi---L~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 139 LL---LISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred EE---EEECChhhCcHHHHhhceee
Confidence 43 23344555778888887665
No 394
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=20.84 E-value=3.9e+02 Score=22.72 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHccCCCCCCCCCCCcccccccHHHHHHHHHH-HHhCCCCCCHHHHH
Q 007684 119 DVFEALRLYDDARS---NGITLSQHHYNVLLYVCSCKCGSESSENGDRENDSNLGLKRGFEIFQQ-MITDKVDPNEATFT 194 (593)
Q Consensus 119 ~~~~A~~l~~~m~~---~g~~p~~~ty~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~l~~~-M~~~g~~p~~~ty~ 194 (593)
++..|+.-+++..+ . .++......+|.-+.- -++-+.++++. +...|+. +..+-.
T Consensus 5 ~~~kAl~~L~ea~~~~~~--~~~~~~~dg~IqrFE~------------------t~ElaWK~lK~~L~~~G~~-~~~spr 63 (124)
T PF08780_consen 5 NFKKALSRLEEALEKYED--PLSELERDGVIQRFEF------------------TFELAWKTLKDYLEYEGIS-ECNSPR 63 (124)
T ss_dssp HHHHHHHHHHHHHHHH-S--CHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHCTSS-CCTSHH
T ss_pred HHHHHHHHHHHHHHhccC--cchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhCCc-ccCCHH
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 007684 195 SVARLAVAKEDPEMAFDLVKQMKSFGIPPKLRSYGPALFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 195 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l~~~m~ 252 (593)
.+++...+.|-++.....++.+..++. ...||+ -+.|.++++.+.
T Consensus 64 ~~~r~A~~~glI~d~e~Wl~m~~~RN~--tsHtYd-----------e~~a~~i~~~I~ 108 (124)
T PF08780_consen 64 DVFREAFKAGLIDDGEIWLDMLEDRNL--TSHTYD-----------EETAEEIYERIP 108 (124)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHH--GGGTTS-----------HHHHHHHHHTHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcc--ccCCCC-----------HHHHHHHHHHHH
No 395
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.79 E-value=2.8e+02 Score=26.21 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=52.8
Q ss_pred cHHHHHHHHHHHHhCCCC-------CCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHhCCCCCC--cccHHHH
Q 007684 170 GLKRGFEIFQQMITDKVD-------PNEATFTSVARLAVAKED---------PEMAFDLVKQMKSFGIPPK--LRSYGPA 231 (593)
Q Consensus 170 ~~~~a~~l~~~M~~~g~~-------p~~~ty~~li~~~~~~g~---------~~~A~~l~~~m~~~g~~p~--~~ty~~l 231 (593)
..+.|..++.+|-...++ -...-|-++..+|++.|- .+.-.++++...+.|+ +. .+.|+.+
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv-~kviPHIYssi 214 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGV-EKVIPHVYSSI 214 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCC-Ceeccccceec
Confidence 678899999998764332 245668899999999874 3445556666666665 22 2556666
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 007684 232 LFGFCKLGNTDKAYEVDAHMG 252 (593)
Q Consensus 232 i~~~~~~g~~~~A~~l~~~m~ 252 (593)
|+--.-.-++++..+++..++
T Consensus 215 IDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 215 IDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccccCCCCHHHHHHHHHHhh
Confidence 655555555666666665543
No 396
>COG1569 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=20.69 E-value=1.7e+02 Score=25.47 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=32.9
Q ss_pred hHHHHHHHHhCCcEE-eCCCCC------CChHHHHHHHHhCCc-EEEecch
Q 007684 466 NKKLLDIWRDGGALY-TTPPGS------NDDWYWLYATVNCKS-LLVTNDE 508 (593)
Q Consensus 466 ~~~~~~~~~~~~~~~-~~~~~s------~DD~~~lyaa~~~~~-~~vs~D~ 508 (593)
-.+.+......+.+. .+|... -||-+||=-|..+++ .+||-|.
T Consensus 63 ~~~~v~~l~~~~~~i~I~p~~~f~~~RDp~Dn~~L~~A~~~kA~~lvTgD~ 113 (142)
T COG1569 63 LGELVLVLFESVSLIAINPLEKFNICRDPKDNKLLALAYESKADYLVTGDQ 113 (142)
T ss_pred HHHHHHHHHHhheeEeecccccccccCCchHHHHHHHHHhccCCEEEEcch
Confidence 335666677777777 555554 579999999999987 8999997
No 397
>PRK09857 putative transposase; Provisional
Probab=20.55 E-value=5.3e+02 Score=25.74 Aligned_cols=56 Identities=9% Similarity=0.035 Sum_probs=24.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHccCCC
Q 007684 237 KLGNTDKAYEVDAHMGESGVVPEEPELSALLKLSVDAKKVDKVYEILHRLRTLVRQV 293 (593)
Q Consensus 237 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Ll~~~~~~g~~~~a~~~l~~m~~~~~~~ 293 (593)
+.++.++..++++.+.+. +.......-++..-+...|..+++.++.++|...|...
T Consensus 218 ~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 218 QTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred hccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 344444444444444332 11122222233444444444455555556665555443
No 398
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=20.26 E-value=8.7e+02 Score=24.26 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--
Q 007684 189 NEATFTSVARLAVAKEDPEMAFDLVKQMKS----FGIPPKLR-SYGPALFGFCKLGNTDKAYEVDAHMGESGVVPEEP-- 261 (593)
Q Consensus 189 ~~~ty~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~-ty~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-- 261 (593)
-..++-.+..-|++.++.+.+++...+... .|.+.|.. +---|.-.|+...-.++-.++.+.|.+.|...+..
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 345788889999999999999988877643 45444432 11122233444445677788888888888765543
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 007684 262 --ELSALLKLSVDAKKVDKVYEILHRLRT 288 (593)
Q Consensus 262 --t~~~Ll~~~~~~g~~~~a~~~l~~m~~ 288 (593)
+|--+... ...++.+|-.++-+...
T Consensus 194 yK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 194 YKVYKGIFKM--MRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHH--HHHhhHHHHHHHHHHhc
Confidence 23333222 23456777777666544
No 399
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=20.13 E-value=3.7e+02 Score=26.69 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=28.4
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 007684 234 GFCKLGNTDKAYEVDAHMGESGVVPEEP-------ELSALLKLSVDAKKVDKVYEILHRL 286 (593)
Q Consensus 234 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~Ll~~~~~~g~~~~a~~~l~~m 286 (593)
-..+.+++++|+.++.++...|+..|+. +...|.+.|...|+....-+.....
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s 71 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS 71 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh
Confidence 3344555666666666666555554433 2334566666666655554444433
No 400
>TIGR03059 psaOeuk photosystem I protein PsaO. Members of this family are the PsaO protein of photosystem I. This protein is found in chloroplasts but not in Cyanobacteria.
Probab=20.12 E-value=58 Score=24.72 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=20.2
Q ss_pred HHHHHHHhCCcEEeCCCCCCChHHHHHHHH
Q 007684 468 KLLDIWRDGGALYTTPPGSNDDWYWLYATV 497 (593)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~s~DD~~~lyaa~ 497 (593)
-..+.+-++=+.|-||+ +-||+||||---
T Consensus 30 lF~~sIg~~LAhFPt~P-al~~~fWL~lit 58 (82)
T TIGR03059 30 LFASSIGENLAHFPAPP-ALDDPFWLLLFT 58 (82)
T ss_pred HHHHHHHHHHhcCCCCC-ccCCchHHHHHH
Confidence 44566666667777766 568999998643
Done!